Query 007421
Match_columns 604
No_of_seqs 407 out of 2184
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 01:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 4.3E-66 1.5E-70 554.6 28.1 345 219-601 8-384 (398)
2 4b8c_D Glucose-repressible alc 100.0 6.1E-50 2.1E-54 462.6 6.7 317 250-601 391-720 (727)
3 3l1w_A Uncharacterized protein 100.0 2E-30 7E-35 260.4 26.2 249 254-600 1-253 (257)
4 3g6s_A Putative endonuclease/e 100.0 3.4E-30 1.2E-34 260.5 25.2 257 252-599 2-261 (267)
5 3mpr_A Putative endonuclease/e 100.0 5.1E-30 1.8E-34 264.6 22.2 270 250-598 3-289 (298)
6 4f1h_A Tyrosyl-DNA phosphodies 100.0 1.4E-29 4.9E-34 248.0 19.8 248 252-597 2-249 (250)
7 4gz1_A Tyrosyl-DNA phosphodies 100.0 3.4E-29 1.2E-33 248.6 21.5 248 249-598 5-254 (256)
8 4fva_A 5'-tyrosyl-DNA phosphod 100.0 6.7E-28 2.3E-32 239.6 25.6 237 249-597 9-255 (256)
9 4gew_A 5'-tyrosyl-DNA phosphod 100.0 1.1E-27 3.7E-32 254.9 25.2 237 249-597 115-361 (362)
10 3teb_A Endonuclease/exonucleas 100.0 1.7E-27 5.8E-32 239.2 18.7 245 252-598 2-266 (266)
11 1zwx_A SMCL, sphingomyelinase- 99.9 4.5E-27 1.5E-31 241.5 18.8 188 250-477 7-210 (301)
12 3i41_A Beta-hemolysin; beta to 99.9 2.9E-26 9.8E-31 239.2 15.5 191 249-477 25-229 (317)
13 2ddr_A Sphingomyelin phosphodi 99.9 9E-25 3.1E-29 224.6 20.6 189 249-477 5-216 (306)
14 1ako_A Exonuclease III; AP-end 99.9 2.7E-24 9.3E-29 216.1 16.6 156 254-472 1-161 (268)
15 2jc4_A Exodeoxyribonuclease II 99.9 1.3E-23 4.4E-28 209.7 19.2 149 254-469 1-153 (256)
16 2jc5_A Exodeoxyribonuclease; h 99.9 8.4E-23 2.9E-27 204.1 18.0 241 254-599 2-257 (259)
17 1vyb_A ORF2 contains A reverse 99.9 1.4E-21 4.7E-26 192.5 19.8 147 251-469 5-152 (238)
18 2o3h_A DNA-(apurinic or apyrim 99.9 2.5E-21 8.6E-26 197.2 20.2 154 249-468 24-183 (285)
19 3g91_A MTH0212, exodeoxyribonu 99.9 2.2E-21 7.6E-26 195.9 19.4 243 253-598 3-257 (265)
20 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 3.2E-21 1.1E-25 192.8 19.1 148 254-469 2-153 (257)
21 1hd7_A DNA-(apurinic or apyrim 99.9 7E-21 2.4E-25 198.2 19.6 156 249-469 57-217 (318)
22 2j63_A AP-endonuclease; base e 99.9 6.6E-21 2.3E-25 208.5 18.3 83 250-355 146-232 (467)
23 2a40_B Deoxyribonuclease-1; WA 99.8 5E-20 1.7E-24 186.0 18.8 170 254-473 1-182 (260)
24 1wdu_A TRAS1 ORF2P; four-layer 99.8 8E-20 2.7E-24 182.4 18.8 145 250-468 16-160 (245)
25 2imq_X Salivary nitrophorin; f 99.7 3.2E-18 1.1E-22 175.7 8.8 172 251-478 6-190 (282)
26 2ei9_A Non-LTR retrotransposon 99.7 8E-17 2.7E-21 161.4 17.7 214 253-601 7-222 (240)
27 1sr4_B CDT B, cytolethal diste 99.7 4.4E-16 1.5E-20 156.4 14.6 166 252-476 3-190 (261)
28 2f1n_A CDT B, cytolethal diste 99.7 1.4E-16 4.8E-21 158.4 10.9 165 249-476 11-199 (262)
29 1i9z_A Synaptojanin, phosphati 99.6 8.4E-14 2.9E-18 146.5 19.0 176 251-479 24-227 (347)
30 2xsw_A 72 kDa inositol polypho 99.3 7.4E-11 2.5E-15 124.4 19.4 175 251-476 25-221 (357)
31 3mtc_A Type II inositol-1,4,5- 99.0 5.2E-09 1.8E-13 107.9 18.2 64 415-478 134-210 (313)
32 4a9c_A Phosphatidylinositol-3, 99.0 1.5E-08 5.1E-13 104.7 18.4 147 296-478 46-210 (316)
33 2dj8_A Protein CBFA2T1; zinc f 94.8 0.021 7.3E-07 43.8 3.6 37 63-107 16-52 (60)
34 2od1_A Protein CBFA2T1; zinc f 94.7 0.021 7.3E-07 43.8 3.4 38 63-108 14-51 (60)
35 2d8q_A BLU protein, zinc finge 94.5 0.025 8.7E-07 44.9 3.4 40 63-110 16-55 (70)
36 2odd_A Protein CBFA2T1; MYND z 94.4 0.023 7.9E-07 44.1 3.0 38 63-108 18-55 (64)
37 2jw6_A Deformed epidermal auto 94.1 0.017 5.9E-07 42.8 1.7 38 62-107 9-46 (52)
38 3qwp_A SET and MYND domain-con 88.3 0.29 9.8E-06 52.4 3.9 40 62-109 47-88 (429)
39 3qww_A SET and MYND domain-con 87.9 0.27 9.1E-06 52.8 3.4 39 62-108 49-89 (433)
40 3n71_A Histone lysine methyltr 86.1 0.5 1.7E-05 51.5 4.3 40 62-109 49-90 (490)
41 2yqq_A Zinc finger HIT domain- 64.1 4.8 0.00016 30.2 2.9 28 64-100 14-41 (56)
42 1lv3_A Hypothetical protein YA 47.1 8.1 0.00028 30.1 1.7 26 74-99 9-37 (68)
43 1x4s_A Protein FON, zinc finge 41.9 11 0.00036 28.6 1.6 28 63-99 12-43 (59)
44 4dix_A Plectin-related protein 39.9 18 0.0006 34.3 3.1 20 178-197 65-84 (230)
45 3vhs_A ATPase wrnip1; zinc fin 28.4 15 0.00051 22.8 0.4 10 74-83 6-15 (29)
46 2w0t_A Lethal(3)malignant brai 26.3 27 0.00093 24.6 1.5 28 74-101 6-37 (43)
47 1jjd_A Metallothionein, SMTA; 26.3 24 0.00083 26.3 1.3 19 82-100 20-38 (55)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=4.3e-66 Score=554.61 Aligned_cols=345 Identities=36% Similarity=0.626 Sum_probs=282.9
Q ss_pred CCCCCCCCceeeeCCCCCCcccccCCCCCCCCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCC
Q 007421 219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298 (604)
Q Consensus 219 p~p~p~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~a 298 (604)
+.|+|+.|+||++... .+..+...||||||||+++.|+++++|+|||++.++|.+|++.|+++|..++|
T Consensus 8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p 76 (398)
T 3ngq_A 8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA 76 (398)
T ss_dssp ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence 5667889999998651 12234568999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCCcccC--CCCCCccceEEeeecCceEEeEeEEEeechhhccccccc
Q 007421 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYN--GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAI 376 (604)
Q Consensus 299 DIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~~~~~--~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~ 376 (604)
||||||||...++.+++.+.|..+||.++|..|++...+ .+++..+|||||||+++|++++...++|++....
T Consensus 77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~----- 151 (398)
T 3ngq_A 77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA----- 151 (398)
T ss_dssp SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHH-----
T ss_pred CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCccc-----
Confidence 999999999988888889999999999999887543111 1124578999999999999999999999876432
Q ss_pred Ccchhhhhhhhhhc-cCceEEEEEEeeeecCCCC----CCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh
Q 007421 377 LPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA 451 (604)
Q Consensus 377 ~~~~~~~~~~~R~~-~~nval~~~Le~k~~~~~~----~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~ 451 (604)
++.+|+++++|++ ++|++++++|+.+.+.... ....+++.|+|+||||+|+|.+.++|+.|+..|++.|+++.+
T Consensus 152 -~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~ 230 (398)
T 3ngq_A 152 -NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILE 230 (398)
T ss_dssp -TCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -ccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2345788899998 5899999999986321000 001246789999999999999999999999999999998853
Q ss_pred c------------CCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCCCCCc----CC-------CCccccCCCCc
Q 007421 452 S------------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTIL----RP-------HTKLTHQLPLV 508 (604)
Q Consensus 452 ~------------~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~~~~~----~~-------~~~l~~~~~L~ 508 (604)
+ .+.|+|||||||+.|+|++|++|++|.++.+|+||....|+.. .. ...+.|+|+|.
T Consensus 231 ~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~ 310 (398)
T 3ngq_A 231 KASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLK 310 (398)
T ss_dssp C-------------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEE
T ss_pred HhhcccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCcccc
Confidence 2 3579999999999999999999999999999999986554431 11 13588999999
Q ss_pred chhhhhhhhccCCccccccccCCCCCCCCccccccCCCCcceeEEEEeCCCceeeeeeccCChhhhc--cCCCCCCCCCC
Q 007421 509 SAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLR--KDTALPSPEWS 586 (604)
Q Consensus 509 Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s~~~l~v~~~~~~~~~~~~~--~~~~lP~~~~p 586 (604)
|||.. ++|+|||||.+|.|+||||||+++.|.+.++++.++++++. +..||||.+||
T Consensus 311 SAy~~---------------------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~P 369 (398)
T 3ngq_A 311 SAYEN---------------------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIP 369 (398)
T ss_dssp ETTTT---------------------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBC
T ss_pred ccccC---------------------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCC
Confidence 99963 37899999999999999999999889999999888888874 68999999999
Q ss_pred CCcccEEEEEEEeec
Q 007421 587 SDHIALLAEFRCKPR 601 (604)
Q Consensus 587 SDHipl~aef~~k~~ 601 (604)
|||+||+|||+|+++
T Consensus 370 SDHi~l~a~f~~~~~ 384 (398)
T 3ngq_A 370 SDHFSLLTQLELHPP 384 (398)
T ss_dssp SSBCCEEEEEEECCC
T ss_pred CcchheeEEEEEccC
Confidence 999999999999875
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.1e-50 Score=462.57 Aligned_cols=317 Identities=37% Similarity=0.664 Sum_probs=102.3
Q ss_pred CCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEE
Q 007421 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (604)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (604)
....+++|||||+++.|++...|+|||.+.+.|.+|+..|+++|..++|||||||||+.+++.+++.+.|+++||.++|.
T Consensus 391 ~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~ 470 (727)
T 4b8c_D 391 AKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFH 470 (727)
T ss_dssp -----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-
T ss_pred cccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999898889999999999997
Q ss_pred ecCCccc--CCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhc-cCceEEEEEEeeeecC
Q 007421 330 RKTNEVY--NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSN 406 (604)
Q Consensus 330 ~k~~~~~--~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~-~~nval~~~Le~k~~~ 406 (604)
.+.+..+ ..+.+..+|||||||++||++++...+.|...+...... ....+.++|.+ ++++++++.|+.+.
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~i~~~~~l~~~~-- 544 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKF----QRTEDYLNRAMNKDNVALFLKLQHIP-- 544 (727)
T ss_dssp ---------------CCCCEEEC---------------------------------------------------------
T ss_pred ccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhh----cccHHHHhhcccCCcEEEEEEEeecC--
Confidence 7654321 123356799999999999999999999887654322110 01223456655 67899999888742
Q ss_pred CCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhc----------CCCcEEEEccCCCCCCChhHHhHh
Q 007421 407 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS----------ADIPMLVCGDFNSVPGSAPHALLA 476 (604)
Q Consensus 407 ~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~----------~~~pvIlcGDFNs~p~S~~~~lL~ 476 (604)
.|+.|+|+||||+|.|.+.++|+.|+..|+++++++.+. .+.|+|||||||+.|++++|++|+
T Consensus 545 -------~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~ 617 (727)
T 4b8c_D 545 -------SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELIN 617 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeee
Confidence 467899999999999988999999999999999887432 467999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCCCcceeEEEEe
Q 007421 477 MGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYT 556 (604)
Q Consensus 477 ~G~v~~~h~d~~~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s 556 (604)
+|.++ .|+||....++.+.. ..+.|.+++.++|.. .+++.||+|+++|.++||||||+
T Consensus 618 ~~~v~-~~~d~~~~~~~~~~~-~~~~~~~~l~say~~--------------------~~~~~~T~~~~~~~~~LDyI~~S 675 (727)
T 4b8c_D 618 TGRVQ-IHQEGNGRDFGYMSE-KNFSHNLALKSSYNC--------------------IGELPFTNFTPSFTDVIDYIWFS 675 (727)
T ss_dssp ------------------------------------------------------------CCCSBCCSSCCBCC------
T ss_pred cCCcC-cchhhcccccccccc-ccccccccccchhhc--------------------CCCCccccccCccCCeeeeEEEc
Confidence 99988 889998877776655 678899999999864 34778999999999999999999
Q ss_pred CCCceeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEEEeec
Q 007421 557 ADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPR 601 (604)
Q Consensus 557 ~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~k~~ 601 (604)
++.+.+..++..++++.+.++.++|+..+||||+||+|+|++++.
T Consensus 676 ~~~l~~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~~ 720 (727)
T 4b8c_D 676 THALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMKT 720 (727)
T ss_dssp -----------CCCHHHHTTCSSSSBTTBCSSBCC----------
T ss_pred CCceeEeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEecC
Confidence 988888888889999899999999999999999999999999764
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.97 E-value=2e-30 Score=260.42 Aligned_cols=249 Identities=19% Similarity=0.296 Sum_probs=168.9
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCC
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (604)
||||||||++... +.....|.+|++.|+++|..++|||||||||+..+...+ .. ..||..+...+..
T Consensus 1 lrv~t~Ni~~~~~---------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~---~l~y~~~~~~~~~ 67 (257)
T 3l1w_A 1 MKIATYNVRVDTE---------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDL-KA---YTTFTCLSAEREG 67 (257)
T ss_dssp CEEEEEECCCCCG---------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH-HH---HSSSEEEEEESSS
T ss_pred CEEEEEEeccCCC---------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-Hh---cCCCcEEEecccC
Confidence 6899999998542 234577999999999999999999999999998766543 23 3489776655432
Q ss_pred cccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCCC
Q 007421 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (604)
Q Consensus 334 ~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~~ 413 (604)
. ...+|+|||||+++|++++...+.+.... .. +...+... ..+.++++.++.. .
T Consensus 68 ~------~~~~g~ail~r~~~~~~~~~~~~~l~~~~-----~~-~~~~~~~~-----~~r~~~~~~~~~~---------~ 121 (257)
T 3l1w_A 68 D------GQGEGLAILYNEQKVQAIDTGYFWLSETP-----QQ-PSIHPEAG-----CPRIALWGLFKET---------T 121 (257)
T ss_dssp S------SCSCEEEEEECTTTEEEEEEEEEESSSST-----TS-SCCCTTCS-----SCCEEEEEEEEET---------T
T ss_pred C------CCCceEEEEEEcceEEEEecCeEECcCCC-----Cc-cccccccc-----ccceeEEEEEEEc---------C
Confidence 1 24579999999999999999887665321 00 11111111 2456777888763 2
Q ss_pred CceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCCCC
Q 007421 414 KRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLT 493 (604)
Q Consensus 414 ~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~~~ 493 (604)
.++.+.|+||||.+. ....|..|+..|++.+++.... + |+|+|||||+.|++..|++|.+|..+.
T Consensus 122 ~g~~~~v~~~Hl~~~--~~~~r~~q~~~l~~~i~~~~~~-~-pvil~GDfN~~~~~~~~~~l~~~l~d~----------- 186 (257)
T 3l1w_A 122 QNTPFLVINVHLDHI--SAHARLAGMTVILEELHDKIAQ-Y-PTLLMGDFNAESGEEVHQLVQKKFQDS----------- 186 (257)
T ss_dssp CSSCEEEEEEECCSS--CHHHHHHHHHHHHHHTHHHHHH-S-CEEEEEECCCCTTSHHHHHHTTTCEEG-----------
T ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHHHHcCC-C-CEEEEeeCCCCCCcHHHHHhhhhccch-----------
Confidence 356899999999764 3468999999999999843222 3 999999999999999999987654331
Q ss_pred CcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC----CCCcceeEEEEeCCCceeeeeeccC
Q 007421 494 ILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR----DFIGTLDYIFYTADSLSVESLLELL 569 (604)
Q Consensus 494 ~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~----~f~~~LDYIf~s~~~l~v~~~~~~~ 569 (604)
+..... ......|..+.. ....+|||||+ ++ +.+.....+.
T Consensus 187 -----------------~~~~~~----------------~~~~~t~~~~~~~~~~~~~~riD~i~~-~~-~~~~~~~v~~ 231 (257)
T 3l1w_A 187 -----------------KNLATH----------------YGPRGTFQNFTYTKPWAELEEIDYIYV-KG-WQVQQTASLT 231 (257)
T ss_dssp -----------------GGTSEE----------------ESCSCCBCTTCTTCCGGGCBCCEEEEE-ES-EEEEEEEECC
T ss_pred -----------------hhhhcc----------------cCCCCcccCCcccCCCCCCCceeEEEE-CC-cEEEEEEEec
Confidence 110000 000112222211 12379999999 44 7776654432
Q ss_pred ChhhhccCCCCCCCCCCCCcccEEEEEEEee
Q 007421 570 DEDSLRKDTALPSPEWSSDHIALLAEFRCKP 600 (604)
Q Consensus 570 ~~~~~~~~~~lP~~~~pSDHipl~aef~~k~ 600 (604)
+. +....+|||.||+++|+++.
T Consensus 232 ~~---------~~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 232 DS---------IDGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp CC---------BTTBCSSSBCCEEEEEEEC-
T ss_pred cC---------cCCcccCCcceEEEEEEEEe
Confidence 21 12456899999999999975
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.97 E-value=3.4e-30 Score=260.53 Aligned_cols=257 Identities=20% Similarity=0.297 Sum_probs=174.7
Q ss_pred CcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEec
Q 007421 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (604)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k 331 (604)
++||||||||++.... .....|..|++.|++.|..++|||||||||+..++.. |...| .||.+++..+
T Consensus 2 ~~l~v~t~Ni~~~~~~---------~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l--~~y~~~~~~~ 69 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQ---------DSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQD-LRAGL--PEYDGIGVGR 69 (267)
T ss_dssp EEEEEEEEECCCCCGG---------GGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHC--TTEEEECCCT
T ss_pred CcEEEEEEEeccCCCC---------ccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHhc--cCCcEEEecC
Confidence 4699999999985421 2356799999999999999999999999999776554 34444 3776654332
Q ss_pred CCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCC
Q 007421 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 411 (604)
Q Consensus 332 ~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~ 411 (604)
.. +....+|+|||||++||++++...+.+.... .......+.... .+.++++.++.+
T Consensus 70 ~~-----~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~-----~R~~~~~~~~~~-------- 126 (267)
T 3g6s_A 70 DD-----GKTAGEYAPLFYRKDKYEVLDSNTFWLAENP-----DSVGMMGWDAVC-----VRIATWAKFKDK-------- 126 (267)
T ss_dssp TT-----SSSSSCBCCEEEETTTEEEEEEEEEESSSCT-----TSTTCCCTTCSS-----CCEEEEEEEEET--------
T ss_pred CC-----CCcCCceeEEEEEccceEEEecccEecCCCC-----CccccccccccC-----cceEEEEEEEEc--------
Confidence 11 1123467999999999999999887765421 100001122222 356788888863
Q ss_pred CCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCC
Q 007421 412 PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDP 491 (604)
Q Consensus 412 ~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~ 491 (604)
..++.|+|+||||.+.. ...|..|+..|++.++++.. +.|+|||||||+.|++.+|+.|.+...
T Consensus 127 -~~~~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~l~~~~~--~~pvIl~GDfN~~~~~~~~~~l~~~~~----------- 190 (267)
T 3g6s_A 127 -ATGKIFMAVNTHFDHVG--EEARRQSALLIIRKIKEIVG--ERPAVVTGDFNVTDASDAYETITTNEF----------- 190 (267)
T ss_dssp -TTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHHHTT--TSCEEEEEECSSCTTSHHHHHHHSSSS-----------
T ss_pred -CCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHHHhcC--CCCEEEEeECCCCCCCHHHHHhhcCCc-----------
Confidence 24678999999997643 57899999999999988743 679999999999999999998875310
Q ss_pred CCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC---CCCcceeEEEEeCCCceeeeeecc
Q 007421 492 LTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTADSLSVESLLEL 568 (604)
Q Consensus 492 ~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~---~f~~~LDYIf~s~~~l~v~~~~~~ 568 (604)
.|.++|..... + .....+|+.+.+ ....+|||||++++ +.+.....+
T Consensus 191 --------------~l~d~~~~~~~-----~----------~~~~~T~~~~~~~~~~~~~riD~I~~s~~-~~~~~~~v~ 240 (267)
T 3g6s_A 191 --------------VMKDAYKTAAR-----V----------TGVDYTFHDFARIPAEDCEKIDFIFVTPQ-VLVKSCEIP 240 (267)
T ss_dssp --------------CCEEHHHHCSE-----E----------EECSCSBCTTTTSCGGGCCCCEEEEECTT-SEEEEEEEC
T ss_pred --------------chhhhHhhhcc-----c----------cCCCCCEeCCCCCCCCCCCcEeEEEeCCC-ceEEEEEEe
Confidence 12334432210 0 001223433332 24589999999987 777655433
Q ss_pred CChhhhccCCCCCCCCCCCCcccEEEEEEEe
Q 007421 569 LDEDSLRKDTALPSPEWSSDHIALLAEFRCK 599 (604)
Q Consensus 569 ~~~~~~~~~~~lP~~~~pSDHipl~aef~~k 599 (604)
... ... ++|||.||+|++..-
T Consensus 241 ~~~---------~~~-~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 241 AEV---------PEA-LLSDHNPQLADLELE 261 (267)
T ss_dssp CCC---------SSS-CCCSBCCEEEEEEEC
T ss_pred cCC---------CCC-CCCCcccEEEEEEec
Confidence 221 013 689999999999864
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-30 Score=264.62 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=174.6
Q ss_pred CCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEE
Q 007421 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (604)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (604)
.+.+||||||||+.....+. .....|..|++.|++.|..++|||||||||+..++..+ ...|. +|.++..
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~~-------~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~~l~--~y~~~~~ 72 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSDS-------ARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDM-KEALP--GYDYIGV 72 (298)
T ss_dssp CCEEEEEEEEECCCCCHHHH-------HHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHH-HHHST--TEEEECC
T ss_pred CCCcEEEEEEEeccCCCCCc-------ccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-HHhCC--CCcEEEE
Confidence 45689999999987532110 12467999999999999999999999999997765543 44452 5655432
Q ss_pred ecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCC
Q 007421 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (604)
Q Consensus 330 ~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~ 409 (604)
... .+....+++|||||++||++++...+.+.... .. +..++.... .+.++++.++.+
T Consensus 73 ~~~-----~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p-----~~-~~~~~~~~~-----~R~~~~~~~~~~------ 130 (298)
T 3mpr_A 73 GRD-----DGKDKGEHSAIFYRTDKFDIVEKGDFWLSETP-----DV-PSKGWDAVL-----PRICSWGHFKCK------ 130 (298)
T ss_dssp CTT-----TSSSSSCBCCEEEETTTEEEEEEEEEESSSST-----TS-SCCCTTCSS-----CCEEEEEEEEET------
T ss_pred ecC-----CCCCCCceeEEEEecCceEEEeccEEEccCCC-----Cc-cCccccccc-----CceeEEEEEEEc------
Confidence 221 11123467999999999999999887665321 10 111122222 346788888763
Q ss_pred CCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCC
Q 007421 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAV 489 (604)
Q Consensus 410 ~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~ 489 (604)
..++.|+|+||||.+ .....|..|+..|++.++++....+.|+|||||||+.|++..|+.|.++.
T Consensus 131 ---~~g~~~~v~~~Hl~~--~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~g---------- 195 (298)
T 3mpr_A 131 ---DTGFEFLFFNLHMDH--IGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKG---------- 195 (298)
T ss_dssp ---TTCCEEEEEEEECCS--SCHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTS----------
T ss_pred ---CCCCEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhcCC----------
Confidence 246789999999964 33578999999999999887533467999999999999999999887531
Q ss_pred CCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC--CCCcceeEEEEeCCCceeeeeec
Q 007421 490 DPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR--DFIGTLDYIFYTADSLSVESLLE 567 (604)
Q Consensus 490 ~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~--~f~~~LDYIf~s~~~l~v~~~~~ 567 (604)
.|.+++..... + .....+|+.+.. ....+|||||++++ +.+.+...
T Consensus 196 ----------------~l~D~~~~~~~-----~----------~~~~~T~~~~~~~~~~~~rID~Il~s~~-~~v~~~~v 243 (298)
T 3mpr_A 196 ----------------VLCDSYEKCDY-----R----------YALNGTFNNFDPNSFTESRIDHIFVSPS-FHVKRYGV 243 (298)
T ss_dssp ----------------SSEEHHHHCSE-----E----------ECSSCSBCTTCTTCCCSCCCEEEEECTT-SEEEEEEE
T ss_pred ----------------cchhhHhhhcc-----c----------CCCCCCccCCCCCCCCCceEEEEEeCCC-eeEEEEEE
Confidence 12233322110 0 011223444432 25789999999987 77766544
Q ss_pred cCChhh-------hccCCCCCCC--------CCCCCcccEEEEEEE
Q 007421 568 LLDEDS-------LRKDTALPSP--------EWSSDHIALLAEFRC 598 (604)
Q Consensus 568 ~~~~~~-------~~~~~~lP~~--------~~pSDHipl~aef~~ 598 (604)
+.+... ......+|.. ..+|||.||++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~ 289 (298)
T 3mpr_A 244 LTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVF 289 (298)
T ss_dssp CCCCEEEECC----------------CCEEEECSSSBCCEEEEEEE
T ss_pred ecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEec
Confidence 432111 0011112211 257999999999875
No 6
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.97 E-value=1.4e-29 Score=248.01 Aligned_cols=248 Identities=16% Similarity=0.163 Sum_probs=153.8
Q ss_pred CcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEec
Q 007421 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (604)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k 331 (604)
.+||||||||++.. ..+|..|++.|++.|..++|||||||||...++..+ ....++...+...
T Consensus 2 ~~l~v~t~Ni~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l----~~~~~~~~~~~~~ 64 (250)
T 4f1h_A 2 SKLSIISWNVDGLD-------------TLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYL----KKRAVSYLFFEGS 64 (250)
T ss_dssp CCEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH----HHHCTTEEEEESC
T ss_pred CeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH----HHhccCceeeccc
Confidence 47999999997521 245889999999999999999999999987654332 2234554444433
Q ss_pred CCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCC
Q 007421 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 411 (604)
Q Consensus 332 ~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~ 411 (604)
. ...|.+++++++++++++...+.+.... ..+..+.+.+..
T Consensus 65 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~--------- 105 (250)
T 4f1h_A 65 D---------DGYFTGIMLRKSRVKFLESEIICFPTTQ---------------------MMRNLLIAQVTF--------- 105 (250)
T ss_dssp S---------SSSEEEEEEETTTCEEEEEEEEECTTCS---------------------SCCEEEEEEEEE---------
T ss_pred c---------cccCceeEEeeccccceecccccccCcc---------------------ccceEEEEEEec---------
Confidence 2 2346788899999999988776543210 112233333332
Q ss_pred CCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCC
Q 007421 412 PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDP 491 (604)
Q Consensus 412 ~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~ 491 (604)
.++.+.|+|+|+.+.+.....|..|+..+++.|++. ..+.|+|||||||+.+.+..+..+....
T Consensus 106 --~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~--~~~~pvIl~GDfN~~~~~~~~~~~~~~~------------ 169 (250)
T 4f1h_A 106 --SGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEA--PEDAIVIFAGDTNLRDAEVANVGGLPAG------------ 169 (250)
T ss_dssp --TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS--CTTEEEEEEEECCCCHHHHHTTTSSCTT------------
T ss_pred --CCcEEEEeccccccccccHHHHHHHHHHHHHHHHhc--CCCCCEEEEEecCCCCcchhhhhhcccc------------
Confidence 367899999999988877788999999999888764 2456999999999987765543221110
Q ss_pred CCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCCCcceeEEEEeCCCceeeeeeccCCh
Q 007421 492 LTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDE 571 (604)
Q Consensus 492 ~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s~~~l~v~~~~~~~~~ 571 (604)
+.+++...... ...+ ...+ .....++.+......+|||||+++... ...+.. ..
T Consensus 170 ---------------~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~-~~~~~~--~~ 223 (250)
T 4f1h_A 170 ---------------VCDVWEQLGKQ-EHCR-----YTWD--TKANSNKTVPYVSRCRFDRIFLRSAKT-APPVTP--DH 223 (250)
T ss_dssp ---------------EEEHHHHTTCC-GGGC-----CSEE--TTTCCSSCCSSCCEECCEEEEEECCTT-SCCCEE--EE
T ss_pred ---------------chHHHHHhcCC-ccCC-----cccc--cccCCCCCcCCCCCccEEEEEEeCccc-ccceee--eE
Confidence 11222211100 0000 0000 001122333344567899999997622 111100 00
Q ss_pred hhhccCCCCCCCCCCCCcccEEEEEE
Q 007421 572 DSLRKDTALPSPEWSSDHIALLAEFR 597 (604)
Q Consensus 572 ~~~~~~~~lP~~~~pSDHipl~aef~ 597 (604)
..+.....+++..++|||+||+|+|.
T Consensus 224 ~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 224 MALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp EEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred EEEecccccCCCCCCCcccCEEEEEe
Confidence 11222345677889999999999996
No 7
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.96 E-value=3.4e-29 Score=248.58 Aligned_cols=248 Identities=18% Similarity=0.182 Sum_probs=155.9
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEE
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (604)
....+||||||||.+.. ..+|..|++.|++.|..++|||||||||...++.. |.+..+.+.+
T Consensus 5 ~~~~~l~v~swNi~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-----l~~~~~~~~~ 66 (256)
T 4gz1_A 5 EDSSTISFITWNIDGLD-------------GCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAY-----LKKRAASYTI 66 (256)
T ss_dssp GGGGEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-----HHHHCTTEEE
T ss_pred CCCCcEEEEEEEcCCCc-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-----HHhhccccce
Confidence 34568999999998632 24689999999999999999999999998765433 3322333333
Q ss_pred EecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCC
Q 007421 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (604)
Q Consensus 329 ~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~ 408 (604)
..... ...|+++|++++++.+.......+... ...+.++.+.+..
T Consensus 67 ~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~------ 111 (256)
T 4gz1_A 67 ITGNE--------EGYFTAILLKKGRVKFKSQEIIPFPNT---------------------KMMRNLLCVNVSL------ 111 (256)
T ss_dssp EESCS--------SSSEEEEEEETTTEEEEEEEEEECTTC---------------------SSCCEEEEEEEEE------
T ss_pred eeccc--------cCCceEEEEEeccccceecccccCCcc---------------------cccceEEEEEEEe------
Confidence 22211 245889999999999887665433221 0112233344433
Q ss_pred CCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCC
Q 007421 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLA 488 (604)
Q Consensus 409 ~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~ 488 (604)
.++.|.|+||||.+.+.....|..|+..+++.|++. ..+.|+|+|||||+.|.+..+..+....
T Consensus 112 -----~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~--~~~~pvIl~GDfN~~~~~~~~~~~~~~~--------- 175 (256)
T 4gz1_A 112 -----GGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEA--PDSTTVIFAGDTNLRDQEVIKCGGLPDN--------- 175 (256)
T ss_dssp -----TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECCCCHHHHHHHTCSCTT---------
T ss_pred -----CCEEEEEEeecccccccchhhhhHHHHHHhhhhhhc--cCcceEEEeCccCCCcchhhhhhhccch---------
Confidence 367899999999888777788999999999888765 3467999999999988766554322110
Q ss_pred CCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCCCcceeEEEEeCCCc--eeeeee
Q 007421 489 VDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSL--SVESLL 566 (604)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s~~~l--~v~~~~ 566 (604)
+.+++...... .+.++ ..+ .....++.+...+..+|||||+++... .+...
T Consensus 176 ------------------~~~~~~~~~~~-~~~~~-----~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~- 228 (256)
T 4gz1_A 176 ------------------VFDAWEFLGKP-KHCQY-----TWD--TKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSL- 228 (256)
T ss_dssp ------------------EEEHHHHTTCC-GGGSC-----SEE--TTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEE-
T ss_pred ------------------hhhHHHHhcCC-CCCCc-----ccc--cCCCCccccCCCCCccEEEEEEECCccceeeeEE-
Confidence 11122111000 00000 000 011122233455677999999997632 22222
Q ss_pred ccCChhhhccCCCCCCCCCCCCcccEEEEEEE
Q 007421 567 ELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 598 (604)
Q Consensus 567 ~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~ 598 (604)
.+ .....++...++|||+||+|+|++
T Consensus 229 ~~------~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 229 DL------VGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp EE------ECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EE------EeccccCCCCCCCccccEEEEEEE
Confidence 11 122345677889999999999987
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.96 E-value=6.7e-28 Score=239.56 Aligned_cols=237 Identities=17% Similarity=0.144 Sum_probs=150.7
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEE
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (604)
.++.+||||||||.+.. ..+|..|++.|++.|..++|||||||||...++..+ .. ..++...+
T Consensus 9 ~~~~~l~v~s~Ni~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l-~~---~~~~~~~~ 71 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGLD-------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPI-DK---LQSLYKIY 71 (256)
T ss_dssp CTTCEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHH-HG---GGGTEEEE
T ss_pred CCCCEEEEEEEecCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHH-HH---hcCCceEe
Confidence 55678999999997521 235899999999999999999999999987654332 22 22444443
Q ss_pred EecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCC
Q 007421 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (604)
Q Consensus 329 ~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~ 408 (604)
.... ....|+||+++. ++++.....+.+.... ..+..+.+.++.
T Consensus 72 ~~~~--------~~~~g~~il~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~------ 115 (256)
T 4fva_A 72 YSNK--------GCQYYTAILVSK-MFDVEKHDVIHFQNSG---------------------MYRTLQILEGSI------ 115 (256)
T ss_dssp ESST--------TSSSEEEEEEET-TCEEEEEEEEECTTCS---------------------SCCEEEEEEEEE------
T ss_pred ecCC--------CCCcceEEEEee-cccceecccccCCCCc---------------------ccceeEEEEEEe------
Confidence 3321 134699999874 6777766655543210 112334444443
Q ss_pred CCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh-cCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCC
Q 007421 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 487 (604)
Q Consensus 409 ~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~-~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~ 487 (604)
.++.|.|+||||.+.......|..|+..+++.+..... ..+.|+|+|||||+.|.+..+.
T Consensus 116 -----~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~-------------- 176 (256)
T 4fva_A 116 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV-------------- 176 (256)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------
T ss_pred -----CCeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------
Confidence 36789999999988766667888899888887776543 4578999999999876532110
Q ss_pred CCCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccc---------ccCCCCcceeEEEEeCC
Q 007421 488 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTH---------CTRDFIGTLDYIFYTAD 558 (604)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn---------~t~~f~~~LDYIf~s~~ 558 (604)
...+.++|..... ..+..||+ ....+..+|||||++++
T Consensus 177 ----------------~~~~~d~~~~~~~-----------------~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~ 223 (256)
T 4fva_A 177 ----------------PDGVKDAWEAAGS-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP 223 (256)
T ss_dssp ----------------CTTCEEHHHHTTC-----------------CGGGCCSEETTTCCSSCSCCSCEECCEEEEEESS
T ss_pred ----------------hcchhhHHHHhCC-----------------CCCCCcccccccCcccccCCCCCcCeEEEEEcCC
Confidence 0123344433211 01122332 12334568999999987
Q ss_pred CceeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEE
Q 007421 559 SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR 597 (604)
Q Consensus 559 ~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~ 597 (604)
+.+.....+.. +.+ .+...+||||+||+|+|.
T Consensus 224 -~~~~~~~~~~~-~~~-----~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 224 -LDKVKFTLEGR-QRI-----RSCLCFPSDHWAINATFF 255 (256)
T ss_dssp -CCEEEEEEECC-SCC-----TTTCSCSCSSCEEEEEEE
T ss_pred -ceeeEEEEEee-Eec-----CCCCCCcCcccCEEEEEc
Confidence 66654422211 111 123568999999999995
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.96 E-value=1.1e-27 Score=254.92 Aligned_cols=237 Identities=18% Similarity=0.137 Sum_probs=153.4
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEE
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (604)
.++..||||||||.+.. ..++..|+..|++.|..++|||||||||...++.. +...+ .+|..++
T Consensus 115 ~~~~~lkVlSWNI~Gl~-------------~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~-l~~~~--~~y~~~~ 178 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLD-------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-IDKLQ--SLYKIYY 178 (362)
T ss_dssp TTTCEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-HHGGG--GTEEEEE
T ss_pred CCCCeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHH-HHHhc--CCceEEe
Confidence 56678999999997521 23588999999999999999999999997665433 23222 2454443
Q ss_pred EecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCC
Q 007421 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (604)
Q Consensus 329 ~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~ 408 (604)
... ....|+|||+|. ++++.....+.+... ...+.++++.+..
T Consensus 179 ~~~---------~~~~G~aIlsk~-~i~~~~~~~~~~~~~---------------------~~~r~~l~~~i~~------ 221 (362)
T 4gew_A 179 SNK---------GCQYYTAILVSK-MFDVEKHDVIHFQNS---------------------GMYRTLQILEGSI------ 221 (362)
T ss_dssp SST---------TSSSEEEEEEET-TEEEEEEEEEECTTC---------------------SSCCEEEEEEEEE------
T ss_pred CCC---------CCCceEEEEEec-cCccccccccCCCCC---------------------cccceEEEEEEEE------
Confidence 222 134699999885 677766555443211 0123445555554
Q ss_pred CCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHh-hcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCC
Q 007421 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA-ASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 487 (604)
Q Consensus 409 ~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~-~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~ 487 (604)
.++.|+|+||||.+.......|..|+..+++.+..+. ...+.|+|||||||..|.+...
T Consensus 222 -----~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~--------------- 281 (362)
T 4gew_A 222 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR--------------- 281 (362)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC---------------
T ss_pred -----CCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch---------------
Confidence 3678999999998877667789999999988887764 3456899999999988753210
Q ss_pred CCCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccc---------cCCCCcceeEEEEeCC
Q 007421 488 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC---------TRDFIGTLDYIFYTAD 558 (604)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~---------t~~f~~~LDYIf~s~~ 558 (604)
....|.++|...+. .....||++ ..++..||||||+++.
T Consensus 282 ---------------~~~gl~Da~~~~~~-----------------~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~ 329 (362)
T 4gew_A 282 ---------------VPDGVKDAWEAAGS-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP 329 (362)
T ss_dssp ---------------CCTTCEEHHHHTTC-----------------CGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS
T ss_pred ---------------hcchHHHHHHHhCC-----------------CCCCCcCcccccCcccccCCCCCcceEEEEEcCC
Confidence 00123445543211 112234442 1234568999999987
Q ss_pred CceeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEE
Q 007421 559 SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR 597 (604)
Q Consensus 559 ~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~ 597 (604)
+.+.....+.. +.+ -+...+||||+||+|+|.
T Consensus 330 -l~~~~~~vi~~-~ri-----~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 330 -LDKVKFTLEGR-QRI-----RSCLCFPSDHWAINATFF 361 (362)
T ss_dssp -CCEEEEEEECC-SCC-----TTTSSCSCSSCEEEEEEE
T ss_pred -cceeEEEEEee-eec-----CCCCCCCCcccCEEEEEc
Confidence 66654422111 111 123568999999999995
No 10
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=1.7e-27 Score=239.25 Aligned_cols=245 Identities=18% Similarity=0.202 Sum_probs=155.5
Q ss_pred CcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhH-------------HHHHhHHH
Q 007421 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH-------------FEEFFAPE 318 (604)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~-------------~~~~l~~~ 318 (604)
++||||||||++.. ..++..|...|++.|..++|||||||||+... +...+...
T Consensus 2 ~~l~v~t~Ni~~~~-------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~ 68 (266)
T 3teb_A 2 NAMKILTVNVHAWL-------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLET 68 (266)
T ss_dssp -CEEEEEEECCTTC-------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHH
T ss_pred CceEEEEEeccccc-------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHH
Confidence 57999999998742 12477889999999999999999999996432 33335677
Q ss_pred HhhCC---CeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceE
Q 007421 319 LDKHG---YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVA 395 (604)
Q Consensus 319 L~~~G---Y~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nva 395 (604)
|++.| |...+..... +.....+|+||| +||++++...+.+.... .. + . ...+.+
T Consensus 69 l~~~~~~~y~~~~~~~~~----~~~~~~~g~ail---sr~~~~~~~~~~~~~~~-----~~-~---------~-~~~r~~ 125 (266)
T 3teb_A 69 LQKYTDTDYYLHWSNSHI----GFGKYNEGVAVI---TRHKIKAEDEFYCTFAQ-----SV-R---------T-ISARRI 125 (266)
T ss_dssp HTTTCCSCCEEEEEEEEE----CSTTEEEEEEEE---ESSCCSEEEEEECSSCC-----CT-T---------C-TTCCEE
T ss_pred HHHhCCCCeEEEEecccc----CccccCCeEEEE---ECceecCceeEEeCCCC-----CC-C---------C-cccceE
Confidence 77665 7665432211 011234699999 67888887776654310 00 0 0 012344
Q ss_pred EEEEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCC--CChhHH
Q 007421 396 LIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP--GSAPHA 473 (604)
Q Consensus 396 l~~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p--~S~~~~ 473 (604)
+.+.++. .++.|.|+||||.+.+.....|..|+..|++.+++ +.|+|||||||+.| ++..|+
T Consensus 126 ~~~~~~~-----------~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~-----~~~~il~GDfN~~~~~~~~~~~ 189 (266)
T 3teb_A 126 VSITINY-----------EGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN-----SNLKILMGDFNTDAIGNVAAYE 189 (266)
T ss_dssp EEEEEEE-----------TTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS-----CCEEEEEEECCCCTTTCHHHHH
T ss_pred EEEEEEe-----------CCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc-----CCcEEEEeECCCCCCCCCcHHH
Confidence 5555554 36789999999988766667899999988776653 57999999999999 899998
Q ss_pred hHhc-CCCCCCCCCCCCCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccccc-CCCCccee
Q 007421 474 LLAM-GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT-RDFIGTLD 551 (604)
Q Consensus 474 lL~~-G~v~~~h~d~~~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t-~~f~~~LD 551 (604)
.|.+ |. .++|...... ..|+ +-...+..|. .....+||
T Consensus 190 ~l~~~~l----------------------------~d~~~~~~~~--~~~~----------t~~~~~~~~~~~~~~~riD 229 (266)
T 3teb_A 190 NILSQGL----------------------------FDTYVMAEKK--DDGI----------TVDKSIHGWDNDKAKKRLD 229 (266)
T ss_dssp HHHTTTC----------------------------EEHHHHCSEE--CCCC----------CEECC------CTTEECCE
T ss_pred hhccccc----------------------------cchHHhhccc--cCCc----------cccCccCCcCcCCcCCeeE
Confidence 7764 32 2233221100 0000 0001111221 22456999
Q ss_pred EEEEeCCCceeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEEE
Q 007421 552 YIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 598 (604)
Q Consensus 552 YIf~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~ 598 (604)
|||++++ +.+.....+.+. .....+|||.||+++|++
T Consensus 230 ~i~~s~~-~~~~~~~v~~~~---------~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 230 YIFSNKE-LKVKESKVIFNN---------KNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp EEEESSC-CCEEEEEEESSS---------SSSCCCSSSCEEEEEECC
T ss_pred EEEeCCC-eEEEEEEEEeCC---------CCCCCcCCccCEEEEEEC
Confidence 9999986 666555433221 113468999999999964
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.95 E-value=4.5e-27 Score=241.54 Aligned_cols=188 Identities=16% Similarity=0.183 Sum_probs=124.7
Q ss_pred CCCcEEEEEecccCCcCCCCCCCCCCCccccCh--HHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhh-CCCeE
Q 007421 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQA 326 (604)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w--~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~GY~~ 326 (604)
.+..||||||||+.... ..+ + .| +.|.+.|.++|...+|||||||||........+...|.+ ++|.+
T Consensus 7 ~~~~lrv~t~Ni~~~~~---~~~---~----~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~ 76 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFSR---NIY---P----NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQT 76 (301)
T ss_dssp CCCSCEEEEEEEEECCT---TTS---T----TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCceEEEEEECccCCc---ccc---C----CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccc
Confidence 45589999999998531 111 1 35 789999999999999999999999865533334445543 44432
Q ss_pred EEEecCCccc-------CCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEE
Q 007421 327 LYKRKTNEVY-------NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVV 399 (604)
Q Consensus 327 ~~~~k~~~~~-------~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~ 399 (604)
.+..+....+ ........|+||| |||++++...+.|.... .+.. . ..+.++.+.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~-----------~~~~----~-~~r~~~~~~ 137 (301)
T 1zwx_A 77 PVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGG-----------GADR----L-SNKGFAYVK 137 (301)
T ss_dssp CCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCC-----------GGGG----G-BCCEEEEEE
T ss_pred cccCCccccccccccccccccccCCCEEEE---ecCCcccceEEEecCCC-----------Cccc----c-cCCCeEEEE
Confidence 2221110000 0011234799999 78999988776654310 0111 1 133456666
Q ss_pred EeeeecCCCCCCCCCceeEEEEeeccccCC------CCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHH
Q 007421 400 LEAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHA 473 (604)
Q Consensus 400 Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p------~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~ 473 (604)
++. .++.|.|+||||.+.. .....|..|+..|.+.+++.....+.|+|||||||+.|++..|+
T Consensus 138 ~~~-----------~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~ 206 (301)
T 1zwx_A 138 IMK-----------NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYH 206 (301)
T ss_dssp EEE-----------TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHH
T ss_pred EEE-----------CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcHHHH
Confidence 664 3578999999997642 13467999999999998875323457999999999999999998
Q ss_pred hHhc
Q 007421 474 LLAM 477 (604)
Q Consensus 474 lL~~ 477 (604)
.|.+
T Consensus 207 ~l~~ 210 (301)
T 1zwx_A 207 DMLK 210 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.94 E-value=2.9e-26 Score=239.22 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=126.7
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhh-CCCeEE
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQAL 327 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~GY~~~ 327 (604)
.....||||||||++..+.. .....|..|.++|...|..++|||||||||........+...|.+ ++|.+.
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~--------~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~ 96 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL--------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTP 96 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT--------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECC
T ss_pred CCCCceEEEEEecccCcccc--------CCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccc
Confidence 45678999999999853221 112368999999999998899999999999876533444555653 444321
Q ss_pred EEecCCc-------ccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEE
Q 007421 328 YKRKTNE-------VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 400 (604)
Q Consensus 328 ~~~k~~~-------~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~L 400 (604)
+....+. .|........|+||| |||++++...+.|.... .++.. ..+.++.+.+
T Consensus 97 ~~g~~~~~~~~~~~~y~~~~~~~~G~~il---Sr~Pi~~~~~~~~~~~~-----------~~d~~-----~~r~~~~~~i 157 (317)
T 3i41_A 97 VLGRSQSGWDKTEGSYSSTVAEDGGVAIV---SKYPIKEKIQHVFKSGC-----------GFDND-----SNKGFVYTKI 157 (317)
T ss_dssp CTTSCSTTCSEEEESCCSSCSBCCCCEEE---ESSCEEEEEEEECSCCC-----------SSGGG-----BCCEEEEEEE
T ss_pred cCCccccCccCcccccccccccCCccEEE---eCCCCccceeEECCCCC-----------Ccccc-----cCcceEEEEE
Confidence 1111100 010001122599999 88999988776664310 01111 1234455555
Q ss_pred eeeecCCCCCCCCCceeEEEEeeccccCCC------CchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHh
Q 007421 401 EAKFSNQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHAL 474 (604)
Q Consensus 401 e~k~~~~~~~~~~~g~~l~V~NTHL~~~p~------~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~l 474 (604)
+. .++.|.|+||||.+... ....|..|+..|.+.+++.....+.|+|||||||+.|.+..|+.
T Consensus 158 ~~-----------~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~ 226 (317)
T 3i41_A 158 EK-----------NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKD 226 (317)
T ss_dssp EE-----------TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHH
T ss_pred EE-----------CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCHHHHH
Confidence 54 36789999999976532 35789999999999998863335679999999999999999998
Q ss_pred Hhc
Q 007421 475 LAM 477 (604)
Q Consensus 475 L~~ 477 (604)
|.+
T Consensus 227 l~~ 229 (317)
T 3i41_A 227 MLK 229 (317)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.93 E-value=9e-25 Score=224.63 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=120.0
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccCh--HHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhh-CCCe
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQ 325 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w--~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~GY~ 325 (604)
.....||||||||+..... .+ -.| +.|.+.+...|...+|||||||||........+...|.. ++|.
T Consensus 5 ~~~~~lrv~t~Ni~~~~~~---~~-------~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~ 74 (306)
T 2ddr_A 5 TQNDTLKVMTHNVYMLSTN---LY-------PNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQ 74 (306)
T ss_dssp --CCEEEEEEEEEEECCTT---TC-------TTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEE
T ss_pred cCCCEEEEEEEECccCccc---cc-------CCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCce
Confidence 3456899999999985311 11 124 678888888888899999999999876533334444543 3332
Q ss_pred EEEEecCC-cc-------cCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEE
Q 007421 326 ALYKRKTN-EV-------YNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALI 397 (604)
Q Consensus 326 ~~~~~k~~-~~-------~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~ 397 (604)
..+..... .. +........|+||| +||+++....+.|.... .++. ...+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~-----------~~~~-----~~~r~~~~ 135 (306)
T 2ddr_A 75 TAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFAKGC-----------GPDN-----LSNKGFVY 135 (306)
T ss_dssp CCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECSCCC--------------------CCCCEEEE
T ss_pred eeccCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcCCCC-----------Ccch-----hcCCCeEE
Confidence 11111000 00 00111235699999 67888877665553210 0110 11345666
Q ss_pred EEEeeeecCCCCCCCCCceeEEEEeeccccCC------CCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCC----
Q 007421 398 VVLEAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP---- 467 (604)
Q Consensus 398 ~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p------~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p---- 467 (604)
+.++. .++.|.|+||||.+.. .....|..|+..|.+.+++.....+.|+|||||||+.|
T Consensus 136 ~~i~~-----------~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d 204 (306)
T 2ddr_A 136 TKIKK-----------NDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE 204 (306)
T ss_dssp EEEEE-----------TTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTS
T ss_pred EEEEe-----------CCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCccccc
Confidence 77765 2578999999997652 24567999999999988875323457999999999999
Q ss_pred --CChhHHhHhc
Q 007421 468 --GSAPHALLAM 477 (604)
Q Consensus 468 --~S~~~~lL~~ 477 (604)
++..|+.|..
T Consensus 205 ~~~s~~~~~l~~ 216 (306)
T 2ddr_A 205 NNNDSEYASMFK 216 (306)
T ss_dssp SCTTSHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 8888876653
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.91 E-value=2.7e-24 Score=216.05 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=103.9
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCC
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (604)
||||||||... ..|.+.|++.|..++|||||||||..... .+....|...||.+++..+.
T Consensus 1 lrv~t~Nv~~~------------------~~~~~~i~~~i~~~~~Dii~LQE~~~~~~-~~~~~~l~~~gy~~~~~~~~- 60 (268)
T 1ako_A 1 MKFVSFNINGL------------------RARPHQLEAIVEKHQPDVIGLQETKVHDD-MFPLEEVAKLGYNVFYHGQK- 60 (268)
T ss_dssp CEEEEEECSCG------------------GGCHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHHTTCEEEEEEET-
T ss_pred CEEEEEehhHH------------------HHHHHHHHHHHHHcCCCEEEEEeccCChh-hCCHhHhccCCCcEEEeCCC-
Confidence 68999999862 23567899999999999999999976532 23344566679988876532
Q ss_pred cccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCCC
Q 007421 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (604)
Q Consensus 334 ~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~~ 413 (604)
...|+|||+|...+.+. . .+.. ......| .++.+.++.
T Consensus 61 --------~~~G~ailsr~~~~~~~---~-~~~~--------------~~~~~~~-----~~~~~~~~~----------- 98 (268)
T 1ako_A 61 --------GHYGVALLTKETPIAVR---R-GFPG--------------DDEEAQR-----RIIMAEIPS----------- 98 (268)
T ss_dssp --------TEEEEEEEESSCCSEEE---E-SSTT--------------CCHHHHT-----TEEEEEEEE-----------
T ss_pred --------CcceEEEEEecCcceee---e-CCCC--------------cccccCC-----CEEEEEEEc-----------
Confidence 23699999765433221 1 1110 0001111 235555554
Q ss_pred CceeEEEEeeccccCCCC-----chhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhH
Q 007421 414 KRQLLCVANTHVNVHQEL-----KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH 472 (604)
Q Consensus 414 ~g~~l~V~NTHL~~~p~~-----~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~ 472 (604)
.++.|.|+|||+.+.... ...|..|+..|.+.+++.. ..+.|+|+|||||+.|++..+
T Consensus 99 ~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~-~~~~~~Il~GDFN~~~~~~~~ 161 (268)
T 1ako_A 99 LLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETEL-KRDNPVLIMGDMNISPTDLDI 161 (268)
T ss_dssp TTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECCCCCSGGGB
T ss_pred CCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhh-hCCCCEEEEeECCCCCchhcc
Confidence 245799999999764322 1357888888888887753 346799999999999987654
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.91 E-value=1.3e-23 Score=209.71 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=97.7
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCC
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (604)
||||||||.. |..|.+.|++.|..++||||||||+..... .+....|...||..++..+.
T Consensus 1 lrv~t~Nv~~------------------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~-~~~~~~~~~~gy~~~~~~~~- 60 (256)
T 2jc4_A 1 MKITTWNVNS------------------LNVRLPQVQNLLADNPPDILVLQELKLDQD-KFPAAALQMMGWHCVWSGQK- 60 (256)
T ss_dssp CEEEEEECSC------------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGG-GSCHHHHHTTTCEEEEECCS-
T ss_pred CEEEEEEcCC------------------cHHHHHHHHHHHHhcCCCEEEEEeeccchh-cCCHhHHhhcCCeEEECCCC-
Confidence 6899999985 677888999999999999999999986543 23344566679987765421
Q ss_pred cccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCCC
Q 007421 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (604)
Q Consensus 334 ~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~~ 413 (604)
...|+|||+|. ++..... .+... ..+. ..++ +.+ +.
T Consensus 61 --------~~~G~ailsr~---~~~~~~~-~~~~~-------------~~~~-----~~~~-~~~--~~----------- 96 (256)
T 2jc4_A 61 --------TYNGVAIVSRS---VPQDVHF-GLPAL-------------PDDP-----QRRV-IAA--TV----------- 96 (256)
T ss_dssp --------SSCCEEEEESS---CCEEEEE-SCTTS-------------TTCC-----SCCE-EEE--EE-----------
T ss_pred --------cceEEEEEECC---ChHHhee-cCCCC-------------ccCC-----cCcE-EEE--Ee-----------
Confidence 23699999764 4433221 11100 0000 1122 222 22
Q ss_pred CceeEEEEeeccccCCCC----chhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCC
Q 007421 414 KRQLLCVANTHVNVHQEL----KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 469 (604)
Q Consensus 414 ~g~~l~V~NTHL~~~p~~----~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S 469 (604)
+.+.|+|+|+...... .+.|..|+..|.+.+++... .+.|+|||||||+.+.+
T Consensus 97 --~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 97 --SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMT-RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp --TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHT-TCSSEEEEEECCCCCSG
T ss_pred --CCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCch
Confidence 1489999999654321 12366788888888877642 46799999999999875
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.89 E-value=8.4e-23 Score=204.12 Aligned_cols=241 Identities=17% Similarity=0.231 Sum_probs=130.7
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHH-HHHHHHHhCCCcEEEEEccchhHHHHHhHHHH-hhCCCeEEEEec
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQALYKRK 331 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~GY~~~~~~k 331 (604)
||||||||.... .+.. .|++.|..++||||||||+..... . +...| ...||.+++...
T Consensus 2 l~v~t~Ni~~~~------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNGIR------------------SAYKKGFYEYIAASGADIVCVQELKAQEA-D-LSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSSHH------------------HHHHTTHHHHHHHTTCSEEEEECCCCCGG-G-CCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeeccHH------------------HHHHhHHHHHHHhcCCCEEEEEEecchhh-c-cChhhccccCCeEEEecc
Confidence 799999998521 1223 489999999999999999976432 1 22223 346898777643
Q ss_pred CCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCC
Q 007421 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 411 (604)
Q Consensus 332 ~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~ 411 (604)
.. ....|+|||+|...+ .... .+. .. ..+. ..+ .+. ++.
T Consensus 62 ~~-------~~~~G~ailsr~~~~---~~~~-~~~------------~~-~~~~-----~~r-~~~--~~~--------- 100 (259)
T 2jc5_A 62 EK-------RGYSGVAVYSKRKPD---NVQI-GMG------------IE-EFDR-----EGR-FVR--CDF--------- 100 (259)
T ss_dssp SS-------TTCCCEEEEESSCCS---EEEE-SCS------------CH-HHHT-----TCC-EEE--EEE---------
T ss_pred CC-------CCcceEEEEEecCce---eEEe-CCC------------CC-ccCC-----CCe-EEE--EEc---------
Confidence 11 134699999766433 2211 111 00 0000 112 122 221
Q ss_pred CCCceeEEEEeeccccCCCCchhHH----HHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCC
Q 007421 412 PGKRQLLCVANTHVNVHQELKDVKL----WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 487 (604)
Q Consensus 412 ~~~g~~l~V~NTHL~~~p~~~~vR~----~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~ 487 (604)
+.+.|+|+|+.+... ...|. .|+..|.+.+++... .+.|+|||||||+.|++... .+|
T Consensus 101 ----~~~~v~~~h~~~~~~-~~~r~~~~~~~~~~l~~~~~~~~~-~~~~~Il~GDFN~~~~~~d~------------~~~ 162 (259)
T 2jc5_A 101 ----GRLSVISLYLPSGSS-AEERQQVKYRFLDAFYPMLEAMKN-EGRDIVVCGDWNIAHQNIDL------------KNW 162 (259)
T ss_dssp ----TTEEEEEEECCCCTT-CHHHHHHHHHHHHHHHHHHHHHHH-TCSEEEEEEECCCCCSGGGB------------SCS
T ss_pred ----CCEEEEEEeccCCCC-CcHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEeeCCCCCchhhc------------cCh
Confidence 248999999976543 23343 566667777766532 36799999999999875211 111
Q ss_pred CCCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCC-------CCcceeEEEEeCCCc
Q 007421 488 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRD-------FIGTLDYIFYTADSL 560 (604)
Q Consensus 488 ~~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~-------f~~~LDYIf~s~~~l 560 (604)
...... .++ ....+..+...-...|+.+.++...+. .+.||++... ...+|||||++++ +
T Consensus 163 ~~~~~~-----~~~-----~~~~~~~~~~~l~~~~l~d~~~~~~~~--~~~~T~~~~~~~~~~~~~~~rID~i~~s~~-~ 229 (259)
T 2jc5_A 163 KGNQKN-----SGF-----LPEEREWIGKVIHKLGWTDMWRTLYPD--VPGYTWWSNRGQAYAKDVGWRIDYQMVTPE-L 229 (259)
T ss_dssp TTCTTS-----TTS-----CHHHHHHHHHHHHTTCCEEHHHHHCTT--CCCCCEESCSSHHHHTTCEECCEEEEECHH-H
T ss_pred hhcCCC-----CCc-----CHHHHHHHHHHhccCCcEEeeHhhCCC--CCCccEECCcCCCccCCCeeEEEEEEECHH-H
Confidence 110000 000 000111111110122333333322221 3447776533 2379999999976 4
Q ss_pred e--eeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEEEe
Q 007421 561 S--VESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCK 599 (604)
Q Consensus 561 ~--v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~k 599 (604)
. +.+..... ...+|||.||+++|+++
T Consensus 230 ~~~~~~~~v~~-------------~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 230 AAKAVSAHVYK-------------DEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp HTTEEEEEECC-------------SSCCSSBCCEEEEESCC
T ss_pred HhHHhheeecC-------------CCCCCCcccEEEEEecc
Confidence 3 44332221 13589999999999875
No 17
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.88 E-value=1.4e-21 Score=192.53 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=90.7
Q ss_pred CCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEe
Q 007421 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (604)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~ 330 (604)
...||||||||.+.. ...|++.|++.|..++||||||||+..... .+ +.+...||.+.|..
T Consensus 5 ~~~lri~t~Nv~g~~----------------~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~--~~-~~l~~~~y~~~~~~ 65 (238)
T 1vyb_A 5 NSHITILTLNINGLN----------------SAIKRHRLASWIKSQDPSVCCIQETHLTCR--DT-HRLKIKGWRKIYQA 65 (238)
T ss_dssp CCCEEEEEEECSCCC----------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTT--SG-GGCCCTTCCEEEEE
T ss_pred CCcceEEEEecccCC----------------chhhHHHHHHHHHHcCCCEEEEecccCCCC--Cc-hhHhhCCCCeEEEc
Confidence 457999999997521 245678899999999999999999964321 11 22334588877654
Q ss_pred cCCcccCCCCCCccceEEeeecC-ceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCC
Q 007421 331 KTNEVYNGNPHTIDGCATFFRRD-RFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (604)
Q Consensus 331 k~~~~~~~~~~~~~G~Aif~r~s-rf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~ 409 (604)
.... ...|+|||+|.. .+.+... .... ..| .+.+.++.
T Consensus 66 ~~~~-------~~~Gvail~r~~~~~~~~~~---~~~~------------------~~r------~i~~~~~~------- 104 (238)
T 1vyb_A 66 NGKQ-------KKAGVAILVSDKTDFKPTKI---KRDK------------------EGH------YIMVKGSI------- 104 (238)
T ss_dssp CCSS-------SSCCEEEEECTTCCCEEEEE---EECT------------------TSS------EEEEEEEE-------
T ss_pred cCCC-------CCceEEEEEeCCCCccccce---eEcC------------------CCc------EEEEEEEe-------
Confidence 3221 234999999876 4544321 1100 012 12233332
Q ss_pred CCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCC
Q 007421 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 469 (604)
Q Consensus 410 ~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S 469 (604)
.++.+.|+|+|+.... .. .+...+++.|.+. .+.|+|+|||||+.+.+
T Consensus 105 ----~~~~~~v~~~y~p~~~---~~--~~~~~l~~~l~~~---~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 105 ----QQEELTILNIYAPNTG---AP--RFIKQVLSDLQRD---LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp ----TTEEEEEEEEECCSSS---HH--HHHHHHHHHTTTT---CCTTEEEEEECSSCSSG
T ss_pred ----CCCcEEEEEEecCCCC---cH--HHHHHHHHHHHhc---cCCCEEEEccCCCCCCc
Confidence 2567999999985432 11 2344444444432 35799999999998764
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.87 E-value=2.5e-21 Score=197.21 Aligned_cols=154 Identities=17% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHH-HHHHHHHhCCCcEEEEEccchhHHHHHhHHHHh-hCCC-e
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGY-Q 325 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY-~ 325 (604)
.....||||||||.... .+.. .|++.|..++||||||||+..... . +...|. ..|| .
T Consensus 24 ~~~~~l~v~t~Ni~~~~------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~ 83 (285)
T 2o3h_A 24 GKPATLKIASWNVDGLR------------------AWIKKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSH 83 (285)
T ss_dssp SCBCCEEEEEEECSSHH------------------HHHHTTHHHHHHHHCCSEEEEECCCCCTT-S-CCGGGGGCGGGCE
T ss_pred CCccceEEEEEecccCh------------------hhhhhhHHHHHHhcCCCEEEEEEeecchh-h-ccHHHHhccCCcE
Confidence 45568999999998521 1112 289999999999999999976431 1 112233 4588 4
Q ss_pred EEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeec
Q 007421 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 405 (604)
Q Consensus 326 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~ 405 (604)
.++..... .....|+|||+|...+.+... +... ..+. ..++ +. ++.
T Consensus 84 ~~~~~~~~------~~g~~Gvailsr~~~~~~~~~----~~~~-------------~~~~-----~~r~-l~--~~~--- 129 (285)
T 2o3h_A 84 QYWSAPSD------KEGYSGVGLLSRQCPLKVSYG----IGDE-------------EHDQ-----EGRV-IV--AEF--- 129 (285)
T ss_dssp EEEECBC--------CCSCCEEEEESSCCSEEEES----CSCG-------------GGSS-----BCCE-EE--EEC---
T ss_pred EEEecccC------CcccceEEEEEccChHHeeec----cCCc-------------ccCC-----CCcE-EE--EEe---
Confidence 44443111 112359999987765443221 1100 0000 1121 11 121
Q ss_pred CCCCCCCCCceeEEEEeeccccCCC---CchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCC
Q 007421 406 NQGADTPGKRQLLCVANTHVNVHQE---LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 468 (604)
Q Consensus 406 ~~~~~~~~~g~~l~V~NTHL~~~p~---~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~ 468 (604)
+.+.|+|+|+..... ....|..|+..|.+.++++.. ..|+|||||||+.+.
T Consensus 130 ----------~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~--~~p~Il~GDFN~~~~ 183 (285)
T 2o3h_A 130 ----------DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS--RKPLVLCGDLNVAHE 183 (285)
T ss_dssp ----------SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHT--TSCEEEEEECSCCCS
T ss_pred ----------CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhcc--CCCEEEEEECCCCCc
Confidence 258999999944321 112377788888888887643 379999999998765
No 19
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.87 E-value=2.2e-21 Score=195.88 Aligned_cols=243 Identities=16% Similarity=0.234 Sum_probs=137.5
Q ss_pred cEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHh-hCCCeEEEEec
Q 007421 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKRK 331 (604)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY~~~~~~k 331 (604)
.|||+||||.... ...++ .|+++|..++||||||||+..... .+ ...+. ..||..++...
T Consensus 3 ~l~i~s~Nv~g~~----------------~~~~~-~l~~~i~~~~~DIv~LQEt~~~~~-~~-~~~~~~~~gy~~~~~~~ 63 (265)
T 3g91_A 3 VLKIISWNVNGLR----------------AVHRK-GFLKWFMEEKPDILCLQEIKAAPE-QL-PRKLRHVEGYRSFFTPA 63 (265)
T ss_dssp EEEEEEEECSCHH----------------HHHHH-THHHHHHHHCCSEEEEECCCSCGG-GS-CHHHHCCTTCEEEEECB
T ss_pred ccEEEEEEcCCch----------------hhhhh-hHHHHHHhcCCCEEEEEecccccc-cc-ChhhhcccCCcEEEccC
Confidence 5899999997621 11222 488999999999999999965431 22 22233 56999777654
Q ss_pred CCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCC
Q 007421 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 411 (604)
Q Consensus 332 ~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~ 411 (604)
.. +...|+|||+|...+.+... +... ..+.. .++ +.++.
T Consensus 64 ~~-------~~~~Gvail~k~~~~~~~~~----~~~~-------------~~d~~-----gr~---i~~~~--------- 102 (265)
T 3g91_A 64 ER-------KGYSGVAMYTKVPPSSLREG----FGVE-------------RFDTE-----GRI---QIADF--------- 102 (265)
T ss_dssp SS-------TTSCCEEEEESSCCSEEECC----CSCH-------------HHHSB-----SCE---EEEEC---------
T ss_pred CC-------CCcCEEEEEEecChHHhccC----CCCc-------------ccCCc-----CCE---EEEEe---------
Confidence 22 23469999987654333211 1000 00101 111 11221
Q ss_pred CCCceeEEEEeeccccCCCC---chhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCC
Q 007421 412 PGKRQLLCVANTHVNVHQEL---KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLA 488 (604)
Q Consensus 412 ~~~g~~l~V~NTHL~~~p~~---~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~ 488 (604)
..+.|+|+|+...... ...|..+...|.+.+++... .+.|+|||||||+.+..- + ..++.
T Consensus 103 ----~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~~~ii~GDfN~~~~~~----------d--~~~~~ 165 (265)
T 3g91_A 103 ----DDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERD-SGRNVIICGDFNTAHREI----------D--LARPK 165 (265)
T ss_dssp ----SSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCCCSGG----------G--BSCTG
T ss_pred ----CCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHc-CCCCEEEECccccCCchh----------h--ccCHh
Confidence 2488999999543321 12366677777777777643 357999999999998641 1 00110
Q ss_pred CCCCCCcCCCCccccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC-------CCCcceeEEEEeCCCc-
Q 007421 489 VDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR-------DFIGTLDYIFYTADSL- 560 (604)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~-------~f~~~LDYIf~s~~~l- 560 (604)
... + . .++ .......+..+ .+.|+.+.++.+.+.. ..||+|.. +...+|||||+++..+
T Consensus 166 ~~~-~---~-~~~-----~~~~~~~~~~l-~~~gl~D~~r~~~p~~--~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~ 232 (265)
T 3g91_A 166 ENS-N---V-SGF-----LPVERAWIDKF-IENGYVDTFRMFNSDP--GQYTWWSYRTRARERNVGWRLDYFFVNEEFKG 232 (265)
T ss_dssp GGT-T---S-TTS-----CHHHHHHHHHH-HHTTEEETHHHHCCCS--CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG
T ss_pred hcC-C---C-Ccc-----CHHHHHHHHHH-HhcCcEEeeHhhCCCC--CCCCCcCCCCCccccCceEEEEEEEECHHHHh
Confidence 000 0 0 000 01112223333 2456777777666543 37888743 2345999999998732
Q ss_pred eeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEEE
Q 007421 561 SVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 598 (604)
Q Consensus 561 ~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~ 598 (604)
.+....... ...+|||.||+++|.-
T Consensus 233 ~~~~~~i~~-------------~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 233 KVKRSWILS-------------DVMGSDHCPIGLEIEL 257 (265)
T ss_dssp GEEEEEECT-------------TCCSSSBCCEEEEEEC
T ss_pred hhcEEEEeC-------------CCCCCCcceEEEEhhh
Confidence 233332211 1247999999999965
No 20
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.87 E-value=3.2e-21 Score=192.84 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=88.1
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCC
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (604)
||||||||.... .|.+.|++.|..++||||||||+..... .+....+...||..++..+.
T Consensus 2 lrv~t~Nv~g~~------------------~~~~~i~~~i~~~~~Dii~lQE~~~~~~-~~~~~~~~~~gy~~~~~~~~- 61 (257)
T 2voa_A 2 LKIATFNVNSIR------------------SRLHIVIPWLKENKPDILCMQETKVENR-KFPEADFHRIGYHVVFSGSK- 61 (257)
T ss_dssp EEEEEEECSCGG------------------GTHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHTTTCEEEEEEET-
T ss_pred eEEEEEecCChH------------------HHHHHHHHHHhhcCCCEEEEEEeecchh-hcCHHHhhhCCCcEEEcCCC-
Confidence 799999997521 2246799999999999999999965321 11122345579987765321
Q ss_pred cccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCCC
Q 007421 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (604)
Q Consensus 334 ~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~~ 413 (604)
...|+|||+|. ++..... .+. .... + ..| + +.+ +.
T Consensus 62 --------~~~G~ailsr~---~~~~~~~-~~~------------~~~~-~-~~r-----~-l~~--~~----------- 96 (257)
T 2voa_A 62 --------GRNGVAIASLE---EPEDVSF-GLD------------SEPK-D-EDR-----L-IRA--KI----------- 96 (257)
T ss_dssp --------TEEEEEEEESS---CCEEEEE-SCS------------SSSC-C-GGG-----E-EEE--EE-----------
T ss_pred --------CccEEEEEEcc---ChHHhee-cCC------------CCcc-c-cCc-----E-EEE--EE-----------
Confidence 23599999765 3332111 111 0000 0 112 1 222 21
Q ss_pred CceeEEEEeeccccCCCCc----hhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCC
Q 007421 414 KRQLLCVANTHVNVHQELK----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 469 (604)
Q Consensus 414 ~g~~l~V~NTHL~~~p~~~----~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S 469 (604)
..+.|+|+|+....... ..|..|+..|.+.+++.. ..+.|+|+|||||+.|.+
T Consensus 97 --~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~-~~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 97 --AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTV-DFRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp --TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECSCCCSG
T ss_pred --CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeeCCCCCch
Confidence 14899999995432211 224455666666666543 245799999999998875
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.86 E-value=7e-21 Score=198.17 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=87.9
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHH-hhCCC-eE
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGY-QA 326 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~GY-~~ 326 (604)
.....||||||||.+.. ... ...|++.|..++||||||||+..... . +...| ...|| ..
T Consensus 57 ~~~~~lrv~t~Nv~g~~----------------~~~-~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~ 117 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLR----------------AWI-KKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQ 117 (318)
T ss_dssp SCBCCEEEEEEECSSHH----------------HHH-HTTHHHHHHHHCCSEEEEECCCCCC-------------CCCEE
T ss_pred CCCCceEEEEEecCcch----------------hhh-hhhHHHHHHhhCCCEEEEEEccCchh-h-ccHHHHhcCCCceE
Confidence 45568999999998521 001 12388999999999999999976421 1 12223 24589 44
Q ss_pred EEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecC
Q 007421 327 LYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSN 406 (604)
Q Consensus 327 ~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~ 406 (604)
++..... .....|+|||+|...+.+.. .+... ..+. ..++ +.+ +.
T Consensus 118 ~~~~~~~------~~g~~Gvailsr~~~~~~~~----~~~~~-------------~~~~-----~~r~-l~~--~~---- 162 (318)
T 1hd7_A 118 YWSAPSD------KEGYSGVGLLSRQCPLKVSY----GIGDE-------------EHDQ-----EGRV-IVA--EF---- 162 (318)
T ss_dssp EEECC-----------CCCEEEEESSCCSEEEE----SCSCG-------------GGSS-----SSCE-EEE--EC----
T ss_pred EEecCCC------CCccceEEEEEcCCceeEEe----cCCCc-------------ccCC-----CCcE-EEE--Ec----
Confidence 4433111 11235999998765443321 11100 0000 1121 222 21
Q ss_pred CCCCCCCCceeEEEEeeccccCCC---CchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCC
Q 007421 407 QGADTPGKRQLLCVANTHVNVHQE---LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 469 (604)
Q Consensus 407 ~~~~~~~~g~~l~V~NTHL~~~p~---~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S 469 (604)
+.|.|+|+|+..... ....|..|+..|.+.++++... .|+|||||||+.+.+
T Consensus 163 ---------~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~--~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 163 ---------DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR--KPLVLCGDLNVAHEE 217 (318)
T ss_dssp ---------SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHH--SCEEEEEECSCCCSG
T ss_pred ---------CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccC--CCEEEEeeCCCCChh
Confidence 248999999943221 1134778888888888776432 699999999998764
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.85 E-value=6.6e-21 Score=208.45 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHH-HHHHHHHHhCCCcEEEEEccchhH--HHHHhHHHHh-hCCCe
Q 007421 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDH--FEEFFAPELD-KHGYQ 325 (604)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~-~~I~~eI~~~~aDIIcLQEV~~~~--~~~~l~~~L~-~~GY~ 325 (604)
....||||||||.... .|..|. +.|++.|..++||||||||+.... +.. ...|. ..||.
T Consensus 146 ~~~~LKI~TwNVnGl~---------------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~--~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGLR---------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADA--NATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCHH---------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHH--HHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCCc---------------ccccccHHHHHHHHHHcCCCEEEEEecccchhccch--HHHHhhcCCce
Confidence 4567999999998621 122222 579999999999999999996432 211 12244 46897
Q ss_pred EEEEecCCcccCCCCCCccceEEeeecCce
Q 007421 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRF 355 (604)
Q Consensus 326 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf 355 (604)
.+|..... .....|+|||+|...+
T Consensus 209 ~~~~~~~~------~~g~~GVAIlsR~pi~ 232 (467)
T 2j63_A 209 FVDHPCAF------KRGYSGTRTYMKNSTT 232 (467)
T ss_dssp EEEECCSS------STTSCCEEEEEECCCC
T ss_pred EEEecccC------CCCcceEEEEEeCCcc
Confidence 76654211 1234699999876553
No 23
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.84 E-value=5e-20 Score=185.99 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=101.0
Q ss_pred EEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHh--CCCcEEEEEccchhH---HHHHhHHHHhh---CCCe
Q 007421 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG--YRADIVCLQEVQNDH---FEEFFAPELDK---HGYQ 325 (604)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~--~~aDIIcLQEV~~~~---~~~~l~~~L~~---~GY~ 325 (604)
||||||||+... . . ..|...+++.|.. .+|||||||||+... ..+ |...|.. .+|.
T Consensus 1 lrv~s~NI~~~g--~-----------~--~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~-l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRTFG--E-----------T--KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGK-LLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEEES--H-----------H--HHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHH-HHHHHTSSSTTSCE
T ss_pred CEEEEEehhhhC--C-----------C--ccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHH-HHHHHHhccCCCcE
Confidence 689999999721 0 0 1133444444444 389999999998642 333 4556643 2376
Q ss_pred EEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeec
Q 007421 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 405 (604)
Q Consensus 326 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~ 405 (604)
++.....+ .....+++|++||++++.+++...+ ... ...+ ....+. +..+++.++..
T Consensus 65 ~v~~~~~~-----~~~~~~~~~~ly~~~~v~~~~~~~~--~~~------~~~~---~~~~~~-----R~p~~~~~~~~-- 121 (260)
T 2a40_B 65 YVVSEPLG-----RNSYKERYLFLFRPNKVSVLDTYQY--DDG------CESC---GNDSFS-----REPAVVKFSSH-- 121 (260)
T ss_dssp EEECCCBC-----SSSCCBEEEEEECTTTCEEEEEEEC--CTT------STTT---HHHHCS-----SCCEEEEEECT--
T ss_pred EEEcccCC-----CCCCcEEEEEEEcCceeEecCceec--cCC------CcCC---CCCcee-----eCCEEEEEEeC--
Confidence 66544321 1123568999999999999886432 110 0000 011122 23355566542
Q ss_pred CCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh-cCCCcEEEEccCCCCCC---ChhHH
Q 007421 406 NQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPG---SAPHA 473 (604)
Q Consensus 406 ~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~-~~~~pvIlcGDFNs~p~---S~~~~ 473 (604)
...++.|.|+|+||.+.. +..|+..|.+.++.+.+ ..+.|+|||||||+.+. +..++
T Consensus 122 ------~~~g~~~~vi~~Hl~~~~-----~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~ 182 (260)
T 2a40_B 122 ------STKVKEFAIVALHSAPSD-----AVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWS 182 (260)
T ss_dssp ------TSSSSEEEEEECCCCGGG-----HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGG
T ss_pred ------CCCCceEEEEEecCCCCC-----cHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhh
Confidence 012678999999997432 34467777776665432 24579999999999987 54443
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.83 E-value=8e-20 Score=182.42 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=84.3
Q ss_pred CCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEE
Q 007421 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (604)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (604)
....||||||||.... .+...+++.|...+||||||||+........ .. ..||..++.
T Consensus 16 ~~~~lri~s~Nv~~~~------------------~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~---~~-~~gy~~~~~ 73 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKK------------------LATAELAIEAATRKAAIALIQEPYVGGAKSM---KG-FRGVRVFQS 73 (245)
T ss_dssp --CCEEEEEEECTTCH------------------HHHHHHHHHHHHHTCSEEEEESCCC---------CC-CSSCEEEEC
T ss_pred cCcceeeeeeeccccH------------------HHHHHHHHHHhhcCCCEEEEEcccccCCccc---cC-CCcceEecc
Confidence 3457999999998632 3467799999999999999999976533221 11 347865432
Q ss_pred ecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCC
Q 007421 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (604)
Q Consensus 330 ~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~ 409 (604)
.... ....|+|||+++.++++... ... ..+-.+.+.++.
T Consensus 74 ~~~~-------~~~~GvaIl~~~~~~~~~~~-----~~~----------------------~~~~~~~~~i~~------- 112 (245)
T 1wdu_A 74 TAQG-------DGTVKAAIAVFDHDLDVIQY-----PQL----------------------TTNNIVVVGIRT------- 112 (245)
T ss_dssp CCCT-------TCCCCEEEEECCSSCEEEEC-----TTT----------------------CCSSEEEEEEEC-------
T ss_pred cccc-------CCCCCeEEEEECCCcceEEe-----ccc----------------------ccCCEEEEEEEc-------
Confidence 2111 12358999998878776321 100 011123444543
Q ss_pred CCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCC
Q 007421 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 468 (604)
Q Consensus 410 ~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~ 468 (604)
.++.+.|+|+|+..... ......|+. +.++.+ ...|+|||||||+.+.
T Consensus 113 ----~~~~~~v~~vy~p~~~~-~~~~~~~l~---~~~~~~---~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 113 ----RAWEITLVSYYFEPDKP-IESYLEQIK---RVERKM---GPKRLIFGGDANAKST 160 (245)
T ss_dssp ----SSCEEEEEEEECCTTSC-SHHHHHHHH---HHHHTT---CSSSEEEEEECCCCCG
T ss_pred ----CCCcEEEEEEEeCCCCC-HHHHHHHHH---HHHHHh---CCCcEEEEeccccCcc
Confidence 24569999999964321 111222222 222222 3469999999998763
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.73 E-value=3.2e-18 Score=175.69 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=103.1
Q ss_pred CCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcE--EEEEccchhH--------HHHHhHHHHh
Q 007421 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQNDH--------FEEFFAPELD 320 (604)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDI--IcLQEV~~~~--------~~~~l~~~L~ 320 (604)
.-+|+||||||...... ... ..++..|...+||| |||||+.... +.+.+...|.
T Consensus 6 ~~~i~V~T~Nv~~~~~~---------~~l-------~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~ 69 (282)
T 2imq_X 6 QLSVHTVSWNSGHERAP---------TNL-------EELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 69 (282)
T ss_dssp EEEEEEEEEEEETCCCC---------SCC-------HHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCcCc---------hhH-------HHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC
Confidence 34799999999875311 011 12222344689996 5999997542 2344566676
Q ss_pred hCCCeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEE
Q 007421 321 KHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 400 (604)
Q Consensus 321 ~~GY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~L 400 (604)
..+|..+.....+. ....+++|+|.+.++.++...+. . + . ..+..+.++.+.+
T Consensus 70 ~~~Y~~v~~~~~~~-------~G~~l~vf~k~~~~~~i~~~~~~--~----~----~----------g~~g~kGav~~r~ 122 (282)
T 2imq_X 70 SKGYTKLKNTITET-------MGLTVYCLEKHLDQNTLKNETII--V----T----V----------DDQKKSGGIVTSF 122 (282)
T ss_dssp HTTEEEEEEEECSS-------EEEEEEEEGGGCCTTTCCCEEEE--E----E----C----------STTSCSEEEEEEE
T ss_pred CCceEEEEeccCce-------eEEEEEEEEccccCccceeeeec--c----c----c----------ccccCCceEEEEE
Confidence 56676654322111 12467788888776655543220 0 0 0 0112335666666
Q ss_pred eeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCC---ChhHHhHhc
Q 007421 401 EAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG---SAPHALLAM 477 (604)
Q Consensus 401 e~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~---S~~~~lL~~ 477 (604)
.. .+..|+++|+||..+......|..|++.+++.+..+ ....|+|+|||||..++ +.+++++.+
T Consensus 123 ~~-----------~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~--~~~~~vi~~GDfN~r~~~~~~~~~~~i~~ 189 (282)
T 2imq_X 123 TI-----------YNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKD--DPSDFLFWIGDLNVRVETNATHAKSLVDQ 189 (282)
T ss_dssp EE-----------TTEEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSS--SCCSEEEEEEECSCCBCSCHHHHHHHHHT
T ss_pred EE-----------CCEEEEEEEECCCCCCchHHHHHHHHHHHHHhhhcc--CccceEEEecccccccCCCHHHHHHHHhh
Confidence 65 357899999999876443455666766665544332 23468999999997655 556777765
Q ss_pred C
Q 007421 478 G 478 (604)
Q Consensus 478 G 478 (604)
+
T Consensus 190 ~ 190 (282)
T 2imq_X 190 N 190 (282)
T ss_dssp T
T ss_pred c
Confidence 4
No 26
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.72 E-value=8e-17 Score=161.39 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=114.3
Q ss_pred cEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEecC
Q 007421 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (604)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~ 332 (604)
.+||+||||.... .|...+++.|...+||||||||+.. ..||. +...
T Consensus 7 ~mki~s~Nvn~~r------------------~~~~~l~~~l~~~~~DIl~LQEt~~------------~~gy~--~~~~- 53 (240)
T 2ei9_A 7 RLRIGQINLGGAE------------------DATRELPSIARDLGLDIVLVQEQYS------------MVGFL--AQCG- 53 (240)
T ss_dssp EEEEEEEECTTCH------------------HHHHTHHHHHHHHTCSEEEEESCCT------------TSSSE--ECCS-
T ss_pred cceEEEEecCccH------------------HHHHHHHHHHHHcCCCEEEeecceE------------cCCce--Eecc-
Confidence 5899999998732 3556699999999999999999942 12776 2111
Q ss_pred CcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCC
Q 007421 333 NEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 412 (604)
Q Consensus 333 ~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~ 412 (604)
...|+||+.+...+++... ... .+.-+.++.++
T Consensus 54 ---------~~~gvail~~~~~~~~~~~-----~~~----------------------~~~~~~~i~i~----------- 86 (240)
T 2ei9_A 54 ---------AHPKAGVYIRNRVLPCAVL-----HHL----------------------SSTHITVVHIG----------- 86 (240)
T ss_dssp ---------SSCSEEEEESSTTSCEEEC-----GGG----------------------CCSSEEEEEET-----------
T ss_pred ---------CCCCEEEEEecCCcceeee-----ccc----------------------CCCCEEEEEEe-----------
Confidence 1358999988644443211 000 00111222222
Q ss_pred CCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCCC
Q 007421 413 GKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 492 (604)
Q Consensus 413 ~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~~ 492 (604)
...+.|+|+|+..... .+.++.++..|++. . .+.|+|||||||..+.. |.....
T Consensus 87 --~~~i~i~svY~P~~~~-~~~~~~~l~~l~~~----~--~~~~~Ii~GDfN~~~~~-----------------w~~~~~ 140 (240)
T 2ei9_A 87 --GWDLYMVSAYFQYSDP-IDPYLHRLGNILDR----L--RGARVVICADTNAHSPL-----------------WHSLPR 140 (240)
T ss_dssp --TTTEEEEEEECCTTSC-SHHHHHHHHHHHHH----T--TTSCEEEEEECCCCCGG-----------------GTCCHH
T ss_pred --eccEEEEEEEcCCCCc-hhHHHHHHHHHHHh----c--CCCcEEEEEeccccccc-----------------ccCCCC
Confidence 1248999999844321 23333333333221 1 13599999999987631 110000
Q ss_pred CCcCCCCccccCCCCcchhhhhhhhccCCccccccc--cCCCCCCCCccccccCCCCcceeEEEEeCCCceeeeeeccCC
Q 007421 493 TILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRR--RMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLD 570 (604)
Q Consensus 493 ~~~~~~~~l~~~~~L~Say~~~~~~~~g~g~~~~~~--~~d~~~~~p~fTn~t~~f~~~LDYIf~s~~~l~v~~~~~~~~ 570 (604)
.. +..+. ......+. . .++.+..+ .+.+ ....||+|......+|||||.++. +..... .+.+
T Consensus 141 ------~~--~~~~~--~r~~~~~~-l-~~~~d~~~l~~~~~--~~~~~T~~s~~~~~rID~~l~s~~-l~~~~~-~i~~ 204 (240)
T 2ei9_A 141 ------HY--VGRGQ--EVADRRAK-M-EDFIGARRLVVHNA--DGHLPTFSTANGESYVDVTLSTRG-VRVSEW-RVTN 204 (240)
T ss_dssp ------HH--SSSCH--HHHHHHHH-H-HHHHHHTTCEECCC--TTCCCSEEETTEEECCEEEEECTT-CCEEEE-EECS
T ss_pred ------CC--CCcch--hhHHHHHH-H-HHHHHhcCCEecCC--CCCCceEeCCCCceEEEEEEecCc-cccCCe-EECC
Confidence 00 00000 00000000 0 01222222 1222 123699987666789999999987 433221 1111
Q ss_pred hhhhccCCCCCCCCCCCCcccEEEEEEEeec
Q 007421 571 EDSLRKDTALPSPEWSSDHIALLAEFRCKPR 601 (604)
Q Consensus 571 ~~~~~~~~~lP~~~~pSDHipl~aef~~k~~ 601 (604)
..+|||.||+++|...+.
T Consensus 205 -------------~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 205 -------------ESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp -------------CCSSSBCCEEEEEEC---
T ss_pred -------------CCCCCcccEEEEECCCCC
Confidence 358999999999988543
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.67 E-value=4.4e-16 Score=156.36 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred CcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHh-CCCcEEEEEccchhHHHHHhHHHHh----------
Q 007421 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDHFEEFFAPELD---------- 320 (604)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~-~~aDIIcLQEV~~~~~~~~l~~~L~---------- 320 (604)
..||||||||+.....+ -..+...|++.|.+ .+||||+|||++.-.-.......+.
T Consensus 3 ~~~kv~TwNi~g~~~~~-------------~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~ 69 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVN-------------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEY 69 (261)
T ss_dssp GGSCEEEEECCCCSSSS-------------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEE
T ss_pred cccEEEEEEcCCCCCCC-------------hhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhh
Confidence 36789999999843222 11223368888888 7799999999976311111001110
Q ss_pred --hC------CCeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccC
Q 007421 321 --KH------GYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKD 392 (604)
Q Consensus 321 --~~------GY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~ 392 (604)
.+ |+.++|..+... +....|+||+. |+++.+...+.... . ... .
T Consensus 70 ~w~lg~~~r~~~~yiy~~~~d~-----~~g~~g~AIlS---R~~~~~v~~l~~~~------------~---~~~-----~ 121 (261)
T 1sr4_B 70 TWNLGTRSRPNMVYIYYSRLDV-----GANRVNLAIVS---RRQADEAFIVHSDS------------S---VLQ-----S 121 (261)
T ss_dssp EEESSCSSSCCEEEEEEECCCT-----TTSCSCEEEEE---SSCCSEEEEECCCC------------C---SSC-----C
T ss_pred hhhcccccCCCceEEEEEeecC-----CCCccceEEEE---ccchhceEEcCCCC------------C---CCc-----C
Confidence 11 345555444211 12456999994 45554433222110 0 001 1
Q ss_pred ceEEEEEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCC---CcEEEEccCCCCCCC
Q 007421 393 NVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD---IPMLVCGDFNSVPGS 469 (604)
Q Consensus 393 nval~~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~---~pvIlcGDFNs~p~S 469 (604)
+-++.+ + + .+ +.|++||+..... ..+..|+..|.+.++......+ .|+||+||||+.|.+
T Consensus 122 R~~l~i--~--i---------~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 122 RPAVGI--R--I---------GT--DVFFTVHALATGG--SDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp CCEEEE--E--E---------TT--EEEEEEECCTTTT--TTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred cceEEE--E--E---------CC--eEEEEeCCCCCCC--chHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 222322 2 2 12 8999999966542 3456667666665544210013 699999999999766
Q ss_pred hhHHhHh
Q 007421 470 APHALLA 476 (604)
Q Consensus 470 ~~~~lL~ 476 (604)
....|.
T Consensus 185 -~~~~L~ 190 (261)
T 1sr4_B 185 -LEVALR 190 (261)
T ss_dssp -HHHHHT
T ss_pred -HHHHhh
Confidence 444554
No 28
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.67 E-value=1.4e-16 Score=158.40 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=100.2
Q ss_pred CCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCC-CcEEEEEccchhH------HH---HH---h
Q 007421 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR-ADIVCLQEVQNDH------FE---EF---F 315 (604)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~-aDIIcLQEV~~~~------~~---~~---l 315 (604)
.....+|||||||.....++ .-+|. .-|.+.|.+++ +|||+|||++... -. .. .
T Consensus 11 ~~~~~~kV~TwNiqgs~~~t----------eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v 77 (262)
T 2f1n_A 11 TDLTDFRVATWNLQGASATT----------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp CCGGGCCEEEEEEEECTTSC----------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred cccceeEEEEEEcCCCCCCC----------ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH
Confidence 45568999999999854322 12242 33556788888 9999999998431 00 00 0
Q ss_pred HHHHhhCC------CeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhh
Q 007421 316 APELDKHG------YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL 389 (604)
Q Consensus 316 ~~~L~~~G------Y~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~ 389 (604)
.+.+..+| +.++|..+.. . .....|+||+ ||++..+...+ ... . . .+|
T Consensus 78 ~E~~w~lGt~srp~~~yiY~~~~D-~----~~~r~nlAIl---Sr~~adev~vL--p~~----------~----~-~~R- 131 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVD-A----LGGRVNLALV---SNRRADEVFVL--SPV----------R----Q-GGR- 131 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSC-S----SSCSSCEEEE---ESSCCSEEEEE--CCS----------S----T-TCC-
T ss_pred HHHHHHhCCCCCCceEEEEEeecc-C----CCCceeeEEE---EcccccceEEC--CCC----------C----C-CCC-
Confidence 11122345 7777776532 1 1245699999 66666643322 110 0 0 023
Q ss_pred ccCceEEEEEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCC-----CcEEEEccCC
Q 007421 390 VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-----IPMLVCGDFN 464 (604)
Q Consensus 390 ~~~nval~~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~-----~pvIlcGDFN 464 (604)
.++.+.+. .++++|||+.+... ..+..|+..+.+.+... .. .|+||+||||
T Consensus 132 ----p~lgiri~---------------~~~ff~tHa~a~~g--~da~a~v~~I~~~~~~~---~~~~~~~~pwii~GDFN 187 (262)
T 2f1n_A 132 ----PLLGIRIG---------------NDAFFTAHAIAMRN--NDAPALVEEVYNFFRDS---RDPVHQALNWMILGDFN 187 (262)
T ss_dssp ----CEEEEEET---------------TEEEEEEECCSSSS--CSHHHHHHHHHHHHHTC---SSHHHHTCEEEEEEECS
T ss_pred ----ceEEEEEC---------------CEEEEEEEecCCCC--ccHHHHHHHHHHHHhcC---cccccCCCcEEEEecCC
Confidence 22332221 27899999977632 45777877777666542 23 6999999999
Q ss_pred CCCCChhHHhHh
Q 007421 465 SVPGSAPHALLA 476 (604)
Q Consensus 465 s~p~S~~~~lL~ 476 (604)
..|++..++++.
T Consensus 188 r~P~sl~~~l~~ 199 (262)
T 2f1n_A 188 REPADLEMNLTV 199 (262)
T ss_dssp SCHHHHHTTSCH
T ss_pred CCCcchhhhhhc
Confidence 999988776543
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.56 E-value=8.4e-14 Score=146.52 Aligned_cols=176 Identities=21% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHH---hCCCcE--EEEEccch--------------hHH
Q 007421 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREII---GYRADI--VCLQEVQN--------------DHF 311 (604)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~---~~~aDI--IcLQEV~~--------------~~~ 311 (604)
.-++.|+||||.+... . ..|.+.|. ...||| |||||+.. ..+
T Consensus 24 ~~~i~v~TwNv~g~~~-~------------------~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w 84 (347)
T 1i9z_A 24 NVKIFVASYNLNGCSA-T------------------TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84 (347)
T ss_dssp EEEEEEEEEECTTCCC-C------------------SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHH
T ss_pred CcEEEEEeEecCCCCC-c------------------hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHH
Confidence 4578999999987432 1 11445554 368999 99999832 122
Q ss_pred HHHhHHHHhh---CCCeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhh
Q 007421 312 EEFFAPELDK---HGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNR 388 (604)
Q Consensus 312 ~~~l~~~L~~---~GY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R 388 (604)
.+.+...|.. .++.+...... .+ ...++++|.|.+..+.+..-....-.. .+..
T Consensus 85 ~~~i~~~L~~~~~~~~~Y~~v~s~-~l------~g~~L~Vfvr~~~~~~i~~v~~~~v~t----------------G~~g 141 (347)
T 1i9z_A 85 ESCVKRLLNGKCTSGPGYVQLRSG-QL------VGTALMIFCKESCLPSIKNVEGTVKKT----------------GLGG 141 (347)
T ss_dssp HHHHHHHHHHTCCSSCCEEEEEEE-EE------TTEEEEEEEEGGGGGGEEEEEEEEEEC----------------CCC-
T ss_pred HHHHHHHHhhcccCCCceeEEEEe-ec------cceEEEEEEehHhhhhccceeeeeEec----------------cCCC
Confidence 3444566653 13333322211 11 124788998877654443211111000 0011
Q ss_pred hccCceEEEEEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh---cCCCcEEEEccCC-
Q 007421 389 LVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDFN- 464 (604)
Q Consensus 389 ~~~~nval~~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~---~~~~pvIlcGDFN- 464 (604)
.+..+-++.+.+.. .+..|+++|+||.++....+.|..|...+++.+.-... ....++|+|||||
T Consensus 142 ~~gnKGav~vr~~~-----------~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNy 210 (347)
T 1i9z_A 142 VSGNKGAVAIRFDY-----------EDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNY 210 (347)
T ss_dssp ---CCEEEEEEEEE-----------TTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCC
T ss_pred ccCCCceEEEEEEE-----------CCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEeccccc
Confidence 12334566666665 25679999999988776556788898888766531110 1235899999999
Q ss_pred --CCCCChhHHhHhcCC
Q 007421 465 --SVPGSAPHALLAMGK 479 (604)
Q Consensus 465 --s~p~S~~~~lL~~G~ 479 (604)
+.+.+.+.+++.++.
T Consensus 211 Ri~~~~~~v~~~i~~~~ 227 (347)
T 1i9z_A 211 RISLTYEEVVPCIAQGK 227 (347)
T ss_dssp CBSSCHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHhhcc
Confidence 555566777777653
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.30 E-value=7.4e-11 Score=124.42 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=95.6
Q ss_pred CCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcE--EEEEccchh--HHHHHhHHHHhhCCCeE
Q 007421 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQND--HFEEFFAPELDKHGYQA 326 (604)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDI--IcLQEV~~~--~~~~~l~~~L~~~GY~~ 326 (604)
.-++.|+||||.+...... .+. +.+...+....||| |+|||+... .+.+.+...| |..+
T Consensus 25 ~l~i~v~TwNv~g~~~~~~---------~L~-----~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L---~~~Y 87 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELPP---------SLD-----EFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETL---GPHY 87 (357)
T ss_dssp EEEEEEEEEECTTCSSCCS---------CCH-----HHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHH---CTTE
T ss_pred CceEEEEEEecCCCCCCcc---------cHH-----HHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHh---CCcc
Confidence 3468999999997431111 110 11212233467996 899999754 2233333333 4444
Q ss_pred EEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEeeeecC
Q 007421 327 LYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSN 406 (604)
Q Consensus 327 ~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~ 406 (604)
.+... ..+ ...+++||.|.+..+.+..-....-.. .+...+...-++.+.+..
T Consensus 88 ~~v~s-~~l------~g~~l~Vfvr~~~~~~i~~v~~~~v~t----------------G~~g~~gNKGav~vr~~~---- 140 (357)
T 2xsw_A 88 VLLSS-AAH------GVLYMSLFIRRDLIWFCSEVECSTVTT----------------RIVSQIKTKGALGISFTF---- 140 (357)
T ss_dssp EEEEE-EEE------TTEEEEEEEEGGGGGGBBCCEEEEEEE----------------EEEETTEEEEEEEEEEEE----
T ss_pred cchhh-hhh------hhEEEEEEEchHHhhcCceeEeccccc----------------ccccccccccEEEEEEEE----
Confidence 33222 111 234688998876544333221111000 000111222344455554
Q ss_pred CCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHh---------------hcCCCcEEEEccCCCCCCCh-
Q 007421 407 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA---------------ASADIPMLVCGDFNSVPGSA- 470 (604)
Q Consensus 407 ~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~---------------~~~~~pvIlcGDFNs~p~S~- 470 (604)
.+..|+++|+||.++......|..|...+++.+.--. .....++|++||||...+..
T Consensus 141 -------~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~ 213 (357)
T 2xsw_A 141 -------FGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGR 213 (357)
T ss_dssp -------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCH
T ss_pred -------CCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccch
Confidence 2568999999999887766778888888877653100 00135799999999877643
Q ss_pred --hHHhHh
Q 007421 471 --PHALLA 476 (604)
Q Consensus 471 --~~~lL~ 476 (604)
+.+++.
T Consensus 214 ~~v~~~i~ 221 (357)
T 2xsw_A 214 TVVDALLC 221 (357)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 445553
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.05 E-value=5.2e-09 Score=107.85 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=41.2
Q ss_pred ceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh---------cCCCcEEEEccCCCCCC----ChhHHhHhcC
Q 007421 415 RQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---------SADIPMLVCGDFNSVPG----SAPHALLAMG 478 (604)
Q Consensus 415 g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~---------~~~~pvIlcGDFNs~p~----S~~~~lL~~G 478 (604)
+..|+++|+||.++.+....|..+...+++.+.--.. ....-+|++||||---+ ..+.+++.++
T Consensus 134 ~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~ 210 (313)
T 3mtc_A 134 NTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK 210 (313)
T ss_dssp TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTT
T ss_pred CcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcC
Confidence 5679999999988776556777777777665431000 01224899999997543 2344566544
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.98 E-value=1.5e-08 Score=104.67 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=81.6
Q ss_pred CCCcEE--EEEccchh--HHHHHhHHHHhh---CCCeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechh
Q 007421 296 YRADIV--CLQEVQND--HFEEFFAPELDK---HGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 368 (604)
Q Consensus 296 ~~aDII--cLQEV~~~--~~~~~l~~~L~~---~GY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~ 368 (604)
..+||+ +|||+... .+.+.+...|.. ..|..+....- ..-.+++|.|.+..+.+..-....-..
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L---------~gi~l~Vfvk~~~~~~I~~v~~~~v~t 116 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSL---------WNIKVAVLVKPEHENRISHVSTSSVKT 116 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEE---------TTEEEEEEECGGGGGGEEEEEEEEEEE
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeee---------hheeeeeEEeHHHhhhCcccccceeee
Confidence 357987 99999642 344555566653 35655433321 124688998876655443322111100
Q ss_pred hcccccccCcchhhhhhhhhhccCceEEEEEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHH-
Q 007421 369 AQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLE- 447 (604)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~- 447 (604)
.+...+...-|+.+.+.. .+..|+++|+||.++.+....|..+...+++.+.
T Consensus 117 ----------------G~~g~~GNKGaV~ir~~~-----------~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f 169 (316)
T 4a9c_A 117 ----------------GIANTLGNKGAVGVSFMF-----------NGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 169 (316)
T ss_dssp ----------------C------CEEEEEEEEEE-----------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC
T ss_pred ----------------eeeEecCCCceEEEEEEE-----------CCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCC
Confidence 001112223444455554 2568999999999887766778888887776542
Q ss_pred --HHhhcCC-----CcEEEEccCCCCCC---ChhHHhHhcC
Q 007421 448 --KIAASAD-----IPMLVCGDFNSVPG---SAPHALLAMG 478 (604)
Q Consensus 448 --~~~~~~~-----~pvIlcGDFNs~p~---S~~~~lL~~G 478 (604)
......+ ..+|++||||---+ ..+.+++.++
T Consensus 170 ~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~ 210 (316)
T 4a9c_A 170 GDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRK 210 (316)
T ss_dssp -------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTT
T ss_pred CCCCcCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcc
Confidence 1011111 24899999997433 3445566554
No 33
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.80 E-value=0.021 Score=43.80 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHHHHhHHHHHH
Q 007421 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (604)
Q Consensus 63 ~~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (604)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||.
T Consensus 16 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~~W~~Hk~ 52 (60)
T 2dj8_A 16 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHH 52 (60)
T ss_dssp CCC-SSSCSCCCEECTTTSC-------CEESSHHHHHHTHHHHTT
T ss_pred ccc-ccCCCCCcccCCCCCC-------EeeeCHHHHHHHHHHHHH
Confidence 457 6788888899998853 579999999999997664
No 34
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=94.73 E-value=0.021 Score=43.82 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.6
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHHHHhHHHHHHH
Q 007421 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (604)
Q Consensus 63 ~~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~ 108 (604)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||..
T Consensus 14 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~dW~~Hk~~ 51 (60)
T 2od1_A 14 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 51 (60)
T ss_dssp SCC-TTTSSCCCEECTTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred Ccc-ccCCCcccccCCCCCC-------eeecCHHHHHHHHHHHhHH
Confidence 457 7888888889998752 5699999999999977653
No 35
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=94.48 E-value=0.025 Score=44.87 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=32.5
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHHHHhHHHHHHHHH
Q 007421 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (604)
Q Consensus 63 ~~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (604)
..| ..|++.+..+|-.|.. .+||+.+|=+..|+.||..=+
T Consensus 16 ~~C-~~C~~~~~~~Cs~Ck~-------v~YCs~eCQ~~~W~~HK~~C~ 55 (70)
T 2d8q_A 16 PRC-AYCSAEASKRCSRCQN-------EWYCCRECQVKHWEKHGKTCV 55 (70)
T ss_dssp CBC-SSSCCBCCCBCTTTSC-------CBCSCHHHHHHTHHHHHHHCC
T ss_pred CcC-CCCCCcccccCCCCCC-------EeeCCHHHhHHHHHHHHHHHH
Confidence 457 7888888889988862 568999999999999887654
No 36
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=94.43 E-value=0.023 Score=44.12 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.8
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHHHHhHHHHHHH
Q 007421 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (604)
Q Consensus 63 ~~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~ 108 (604)
..| ..|++.+.++|..|.. .+|||.+|=+..|+.||..
T Consensus 18 ~~C-~~C~~~~~~~Cs~C~~-------~~YCs~~CQ~~~W~~Hk~~ 55 (64)
T 2odd_A 18 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 55 (64)
T ss_dssp SSC-TTTSSCCCEEETTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CcC-ccccCCCcccCCCCCC-------hhhCCHHHHHHHHHHHhHH
Confidence 356 6788888899998862 5699999999999987654
No 37
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.13 E-value=0.017 Score=42.79 Aligned_cols=38 Identities=32% Similarity=0.699 Sum_probs=29.9
Q ss_pred cccccCCCCCCceeecchhhccCCCCCceeecChHHHHHhHHHHHH
Q 007421 62 VAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (604)
Q Consensus 62 ~~~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (604)
...| ..|++.+.++|..|.. .+|||.+|=+..|+.||.
T Consensus 9 ~~~C-~~C~~~~~~~C~~C~~-------~~YCs~~CQ~~~W~~Hk~ 46 (52)
T 2jw6_A 9 EQSC-VNCGREAMSECTGCHK-------VNYCSTFCQRKDWKDHQH 46 (52)
T ss_dssp --CC-SSSSSSCSEECTTTCS-------SEESSHHHHHHHTTTGGG
T ss_pred CCcC-CCCCCCCcCcCCCCCC-------EeecCHHHHHHHHHHHCH
Confidence 3557 7889888899998852 569999999999997664
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.28 E-value=0.29 Score=52.38 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=29.8
Q ss_pred cccccCCCCC--CceeecchhhccCCCCCceeecChHHHHHhHHHHHHHH
Q 007421 62 VAVCSVHPSE--QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (604)
Q Consensus 62 ~~~c~~~~~~--~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h 109 (604)
...| .+|.+ .+...|..|.. ..|||.+|.+..|+.||..=
T Consensus 47 ~~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 88 (429)
T 3qwp_A 47 GVVC-DRCLLGKEKLMRCSQCRV-------AKYCSAKCQKKAWPDHKREC 88 (429)
T ss_dssp TTBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHTHHHHHHHH
T ss_pred CCcC-cCCCCcCCCCCcCCCCCC-------cccCChhhhhhhhhhhHHhh
Confidence 3457 67775 34578998853 46999999999999888643
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.95 E-value=0.27 Score=52.76 Aligned_cols=39 Identities=18% Similarity=0.517 Sum_probs=29.3
Q ss_pred cccccCCCCCC--ceeecchhhccCCCCCceeecChHHHHHhHHHHHHH
Q 007421 62 VAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (604)
Q Consensus 62 ~~~c~~~~~~~--~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~ 108 (604)
...| .+|.+. +...|+.|.. .+|||.+|.+..|+.||..
T Consensus 49 ~~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~e 89 (433)
T 3qww_A 49 GHHC-ECCFARKEGLSKCGRCKQ-------AFYCDVECQKEDWPLHKLE 89 (433)
T ss_dssp TTBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CCcC-CcccccCCCCCCCCCCcc-------eeecChhhhhhhhhHHHHH
Confidence 3457 677764 4588998862 5799999999999877653
No 40
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=86.14 E-value=0.5 Score=51.49 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=29.4
Q ss_pred cccccCCCCC--CceeecchhhccCCCCCceeecChHHHHHhHHHHHHHH
Q 007421 62 VAVCSVHPSE--QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (604)
Q Consensus 62 ~~~c~~~~~~--~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h 109 (604)
...| .+|.+ .+.+.|..|.. .+|||.+|.+..|+.||..=
T Consensus 49 ~~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 90 (490)
T 3n71_A 49 NFVC-HTCFKRQEKLHRCGQCKF-------AHYCDRTCQKDAWLNHKNEC 90 (490)
T ss_dssp TTBC-TTTCCBCSCCEECTTTSC-------CEESSHHHHHHHHHHHHHHH
T ss_pred CCcC-CCCCCCCCCCCCCCCCCC-------cCcCCHHHhhhhhhHHHHHh
Confidence 3456 67755 34578988752 46999999999999888644
No 41
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.11 E-value=4.8 Score=30.22 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=21.3
Q ss_pred cccCCCCCCceeecchhhccCCCCCceeecChHHHHH
Q 007421 64 VCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (604)
Q Consensus 64 ~c~~~~~~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk~ 100 (604)
.| .-|+..++-.||.|. ..|||-.|||.
T Consensus 14 ~C-~vC~~~~kY~CPrC~--------~~yCSl~C~k~ 41 (56)
T 2yqq_A 14 VC-VICLEKPKYRCPACR--------VPYCSVVCFRK 41 (56)
T ss_dssp CC-TTTCSCCSEECTTTC--------CEESSHHHHHH
T ss_pred cc-CcCcCCCeeeCCCCC--------CCeeCHHHHHH
Confidence 46 557778889999774 44999999864
No 42
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=47.10 E-value=8.1 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=16.9
Q ss_pred eeecchhhccCC---CCCceeecChHHHH
Q 007421 74 TLQCLGCVKAKI---PVAKSYHCSPKCFS 99 (604)
Q Consensus 74 ~l~cp~c~~~~~---~~~~~~fc~q~Cfk 99 (604)
+..||+|.|.-. .....-|||+-|=.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~ 37 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQL 37 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHh
Confidence 467888887632 11234599999943
No 43
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=41.91 E-value=11 Score=28.61 Aligned_cols=28 Identities=29% Similarity=0.719 Sum_probs=20.4
Q ss_pred ccccCCCC----CCceeecchhhccCCCCCceeecChHHHH
Q 007421 63 AVCSVHPS----EQATLQCLGCVKAKIPVAKSYHCSPKCFS 99 (604)
Q Consensus 63 ~~c~~~~~----~~~~l~cp~c~~~~~~~~~~~fc~q~Cfk 99 (604)
..| .-|. +.++-.||.|. ++ |||-.|||
T Consensus 12 ~~C-~vC~~~~~~~akY~CPrC~---~r-----YCSl~C~k 43 (59)
T 1x4s_A 12 GPC-GFCPAGEVQPARYTCPRCN---AP-----YCSLRCYR 43 (59)
T ss_dssp EEE-CSSCTTCCEEECEECTTTC---CE-----ESSHHHHH
T ss_pred CcC-cCCCCCcCCCccccCcCCC---CC-----ccChHHHH
Confidence 346 4565 45789999763 44 99999999
No 44
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=39.87 E-value=18 Score=34.33 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.7
Q ss_pred eeecCCccCCCceEEEEEEE
Q 007421 178 KTYTPSADDIGHVLKFECVV 197 (604)
Q Consensus 178 ~~y~P~~~diG~~l~l~~~~ 197 (604)
..|.|.+.|||++|+++|++
T Consensus 65 ~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 65 SVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp SEECCCGGGBTSEEEEEEEE
T ss_pred ccccCCccccccEEEEEEec
Confidence 67999999999999999986
No 45
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=28.40 E-value=15 Score=22.76 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=8.1
Q ss_pred eeecchhhcc
Q 007421 74 TLQCLGCVKA 83 (604)
Q Consensus 74 ~l~cp~c~~~ 83 (604)
..|||.|.+.
T Consensus 6 ~vqcpvcqq~ 15 (29)
T 3vhs_A 6 QVQCPVCQQM 15 (29)
T ss_dssp EEECTTTCCE
T ss_pred eeeChHHHHh
Confidence 5899999864
No 46
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=26.32 E-value=27 Score=24.61 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=18.8
Q ss_pred eeecchhhccCCCCC----ceeecChHHHHHh
Q 007421 74 TLQCLGCVKAKIPVA----KSYHCSPKCFSDA 101 (604)
Q Consensus 74 ~l~cp~c~~~~~~~~----~~~fc~q~Cfk~~ 101 (604)
.+.|-.|-+.|.... ..-|||..|=|..
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry 37 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSRSY 37 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhCcc
Confidence 477888888766411 1238999998764
No 47
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=26.29 E-value=24 Score=26.26 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=13.9
Q ss_pred ccCCCCCceeecChHHHHH
Q 007421 82 KAKIPVAKSYHCSPKCFSD 100 (604)
Q Consensus 82 ~~~~~~~~~~fc~q~Cfk~ 100 (604)
+.-|.....||||++|-+.
T Consensus 20 ~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 20 SKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp TTSEESSSCEESSHHHHHT
T ss_pred HHhhhcCCeEEehHHHHcc
Confidence 4445566889999999654
Done!