Query 007422
Match_columns 604
No_of_seqs 435 out of 2902
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 23:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 3.5E-93 7.6E-98 786.5 46.7 591 1-604 4-657 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 6.2E-46 1.3E-50 382.0 27.1 265 217-483 2-275 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 8E-43 1.7E-47 343.4 25.3 233 1-244 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 2.9E-27 6.2E-32 244.0 33.6 264 32-301 306-588 (980)
5 smart00302 GED Dynamin GTPase 99.9 1.3E-23 2.8E-28 176.4 12.3 89 510-600 4-92 (92)
6 COG1159 Era GTPase [General fu 99.9 4.1E-25 8.9E-30 217.7 0.5 233 33-329 5-244 (298)
7 PF02212 GED: Dynamin GTPase e 99.9 1.5E-21 3.4E-26 164.4 11.7 89 510-600 4-92 (92)
8 PF00350 Dynamin_N: Dynamin fa 99.9 4.6E-21 1E-25 180.8 15.3 161 37-207 1-168 (168)
9 TIGR00436 era GTP-binding prot 99.8 6.9E-20 1.5E-24 186.4 12.6 228 36-328 2-235 (270)
10 PRK00089 era GTPase Era; Revie 99.8 1.9E-18 4.1E-23 178.1 12.1 231 33-328 4-240 (292)
11 PRK15494 era GTPase Era; Provi 99.7 1E-17 2.2E-22 175.5 13.0 228 35-328 53-287 (339)
12 PRK09866 hypothetical protein; 99.7 7.4E-14 1.6E-18 151.2 41.3 211 33-251 68-350 (741)
13 KOG1423 Ras-like GTPase ERA [C 99.7 1E-17 2.2E-22 164.2 9.3 215 33-305 71-319 (379)
14 PF02421 FeoB_N: Ferrous iron 99.6 9.5E-17 2.1E-21 147.7 4.8 146 36-247 2-154 (156)
15 COG1160 Predicted GTPases [Gen 99.6 1.7E-15 3.6E-20 158.0 11.6 156 35-253 4-164 (444)
16 COG0486 ThdF Predicted GTPase 99.6 2E-14 4.4E-19 150.3 19.7 156 32-251 215-373 (454)
17 PRK12298 obgE GTPase CgtA; Rev 99.6 2.3E-14 4.9E-19 152.2 15.7 173 34-267 159-346 (390)
18 TIGR03156 GTP_HflX GTP-binding 99.6 3.5E-14 7.5E-19 149.1 15.6 152 33-249 188-347 (351)
19 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.3E-14 4.9E-19 138.9 13.0 169 36-262 2-193 (196)
20 COG1084 Predicted GTPase [Gene 99.5 4.7E-14 1E-18 140.8 13.4 150 4-213 137-296 (346)
21 PRK11058 GTPase HflX; Provisio 99.5 1.1E-13 2.4E-18 148.6 15.5 156 33-252 196-360 (426)
22 PRK12299 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.3E-18 144.2 14.3 161 33-253 157-327 (335)
23 PRK05291 trmE tRNA modificatio 99.5 1.3E-12 2.9E-17 141.8 20.9 153 33-254 214-370 (449)
24 COG0218 Predicted GTPase [Gene 99.5 1.8E-13 3.8E-18 128.8 11.3 123 33-214 23-152 (200)
25 cd04163 Era Era subfamily. Er 99.5 3.8E-13 8.2E-18 125.2 13.2 156 34-249 3-164 (168)
26 cd01898 Obg Obg subfamily. Th 99.5 5.7E-13 1.2E-17 125.4 13.9 153 36-249 2-166 (170)
27 TIGR00450 mnmE_trmE_thdF tRNA 99.5 6E-12 1.3E-16 136.0 22.8 154 33-253 202-359 (442)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 2.6E-13 5.7E-18 127.3 10.7 153 35-252 1-164 (168)
29 cd01878 HflX HflX subfamily. 99.5 6.8E-13 1.5E-17 129.3 13.7 153 33-249 40-200 (204)
30 PRK12296 obgE GTPase CgtA; Rev 99.4 5.8E-13 1.3E-17 143.9 11.6 159 33-253 158-339 (500)
31 cd01897 NOG NOG1 is a nucleola 99.4 1.6E-12 3.5E-17 122.2 13.1 153 35-250 1-164 (168)
32 TIGR02729 Obg_CgtA Obg family 99.4 1.3E-12 2.9E-17 136.0 13.0 157 33-250 156-325 (329)
33 cd01867 Rab8_Rab10_Rab13_like 99.4 7.8E-13 1.7E-17 124.5 10.2 152 34-251 3-162 (167)
34 cd01866 Rab2 Rab2 subfamily. 99.4 2E-12 4.4E-17 121.8 12.5 153 34-252 4-164 (168)
35 PRK12297 obgE GTPase CgtA; Rev 99.4 2.5E-12 5.3E-17 137.4 14.4 154 34-251 158-324 (424)
36 cd04164 trmE TrmE (MnmE, ThdF, 99.4 4.5E-12 9.8E-17 117.1 14.4 148 35-249 2-152 (157)
37 PRK03003 GTP-binding protein D 99.4 2.3E-12 4.9E-17 141.4 14.4 156 33-253 37-198 (472)
38 cd04112 Rab26 Rab26 subfamily. 99.4 1.9E-12 4.1E-17 124.9 12.2 110 137-259 51-168 (191)
39 cd01865 Rab3 Rab3 subfamily. 99.4 1.1E-12 2.4E-17 123.2 10.1 101 137-251 51-160 (165)
40 PF04548 AIG1: AIG1 family; I 99.4 1E-12 2.2E-17 128.8 10.2 162 36-255 2-187 (212)
41 cd04171 SelB SelB subfamily. 99.4 1.7E-12 3.6E-17 121.1 11.1 100 136-249 51-161 (164)
42 cd01861 Rab6 Rab6 subfamily. 99.4 1.8E-12 3.9E-17 120.8 11.2 149 36-250 2-158 (161)
43 cd01868 Rab11_like Rab11-like. 99.4 1.8E-12 4E-17 121.4 11.2 151 34-250 3-161 (165)
44 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.4E-12 3.1E-17 122.3 10.5 102 137-251 52-161 (166)
45 cd01895 EngA2 EngA2 subfamily. 99.4 4.6E-12 1E-16 118.9 13.8 158 34-248 2-169 (174)
46 PRK00454 engB GTP-binding prot 99.4 2.7E-12 5.8E-17 124.0 12.3 160 33-254 23-194 (196)
47 cd04122 Rab14 Rab14 subfamily. 99.4 1.9E-12 4.1E-17 121.7 10.7 150 35-250 3-160 (166)
48 PRK04213 GTP-binding protein; 99.4 3.1E-12 6.7E-17 124.2 12.4 156 33-251 8-189 (201)
49 cd01879 FeoB Ferrous iron tran 99.4 2.6E-12 5.6E-17 119.2 11.3 105 137-250 44-153 (158)
50 TIGR03598 GTPase_YsxC ribosome 99.4 2.9E-12 6.2E-17 122.2 11.7 147 32-242 16-178 (179)
51 cd01894 EngA1 EngA1 subfamily. 99.4 1.8E-12 4E-17 119.8 10.0 103 137-249 46-153 (157)
52 cd04119 RJL RJL (RabJ-Like) su 99.4 2E-12 4.3E-17 121.1 10.2 148 36-250 2-163 (168)
53 COG1160 Predicted GTPases [Gen 99.4 4.7E-12 1E-16 132.4 13.7 184 33-286 177-371 (444)
54 PF01926 MMR_HSR1: 50S ribosom 99.4 3.1E-12 6.7E-17 112.9 10.6 111 36-206 1-116 (116)
55 smart00173 RAS Ras subfamily o 99.4 3.5E-12 7.6E-17 119.3 11.5 101 137-250 49-158 (164)
56 PRK09554 feoB ferrous iron tra 99.4 1.3E-11 2.8E-16 141.4 18.2 159 34-252 3-166 (772)
57 PRK03003 GTP-binding protein D 99.4 1.2E-11 2.5E-16 135.8 17.2 160 33-251 210-379 (472)
58 TIGR02528 EutP ethanolamine ut 99.4 5.7E-12 1.2E-16 115.1 12.5 100 139-248 38-139 (142)
59 cd04145 M_R_Ras_like M-Ras/R-R 99.4 3.8E-12 8.3E-17 118.9 11.5 100 137-249 51-159 (164)
60 cd00880 Era_like Era (E. coli 99.4 8.8E-12 1.9E-16 114.6 13.8 109 135-249 44-159 (163)
61 smart00175 RAB Rab subfamily o 99.4 2.2E-12 4.7E-17 120.4 9.8 103 137-253 50-161 (164)
62 cd01862 Rab7 Rab7 subfamily. 99.4 4.3E-12 9.3E-17 119.5 11.9 104 137-253 50-166 (172)
63 cd04136 Rap_like Rap-like subf 99.4 2.9E-12 6.4E-17 119.5 10.6 101 137-250 50-159 (163)
64 TIGR03594 GTPase_EngA ribosome 99.4 7.3E-12 1.6E-16 136.2 15.4 160 33-250 171-340 (429)
65 TIGR03594 GTPase_EngA ribosome 99.4 6.9E-12 1.5E-16 136.4 15.1 151 36-252 1-158 (429)
66 cd04110 Rab35 Rab35 subfamily. 99.4 3.8E-12 8.3E-17 123.6 11.6 156 33-254 5-167 (199)
67 PRK00093 GTP-binding protein D 99.4 7.4E-12 1.6E-16 136.4 15.2 152 35-251 2-159 (435)
68 cd00154 Rab Rab family. Rab G 99.4 2.6E-12 5.6E-17 118.5 9.7 148 35-248 1-156 (159)
69 cd04109 Rab28 Rab28 subfamily. 99.4 3.4E-12 7.4E-17 125.5 11.0 103 137-252 51-164 (215)
70 cd04101 RabL4 RabL4 (Rab-like4 99.4 5.3E-12 1.1E-16 118.1 11.7 102 136-250 52-160 (164)
71 PRK15467 ethanolamine utilizat 99.4 8.2E-12 1.8E-16 116.6 12.9 103 140-253 41-146 (158)
72 cd04127 Rab27A Rab27a subfamil 99.4 4.4E-12 9.6E-17 120.7 11.2 102 137-251 64-174 (180)
73 cd04113 Rab4 Rab4 subfamily. 99.4 4.4E-12 9.6E-17 118.3 10.8 149 36-250 2-158 (161)
74 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 3.5E-12 7.6E-17 120.6 10.2 154 36-255 2-166 (170)
75 COG0370 FeoB Fe2+ transport sy 99.3 1.1E-11 2.4E-16 135.3 15.3 154 35-251 4-161 (653)
76 cd04106 Rab23_lke Rab23-like s 99.3 3.5E-12 7.7E-17 119.0 10.0 100 137-249 52-158 (162)
77 cd00881 GTP_translation_factor 99.3 6.1E-12 1.3E-16 120.2 11.8 103 135-250 61-183 (189)
78 cd04138 H_N_K_Ras_like H-Ras/N 99.3 6.3E-12 1.4E-16 116.9 11.1 99 137-249 50-157 (162)
79 cd04157 Arl6 Arl6 subfamily. 99.3 8.6E-12 1.9E-16 116.2 11.9 100 137-249 46-159 (162)
80 cd04142 RRP22 RRP22 subfamily. 99.3 8.5E-12 1.8E-16 121.0 12.2 157 36-250 2-170 (198)
81 cd01890 LepA LepA subfamily. 99.3 5.9E-12 1.3E-16 119.7 10.8 101 136-250 67-173 (179)
82 cd04175 Rap1 Rap1 subgroup. T 99.3 7.2E-12 1.6E-16 117.3 11.1 101 137-250 50-159 (164)
83 KOG1191 Mitochondrial GTPase [ 99.3 5.6E-11 1.2E-15 124.3 18.6 181 7-249 245-445 (531)
84 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 8E-12 1.7E-16 121.5 11.7 103 137-253 51-167 (201)
85 cd01864 Rab19 Rab19 subfamily. 99.3 5.1E-12 1.1E-16 118.5 9.9 99 137-249 53-161 (165)
86 cd04111 Rab39 Rab39 subfamily. 99.3 7.1E-12 1.5E-16 122.9 11.2 105 137-254 53-166 (211)
87 PRK00093 GTP-binding protein D 99.3 3.8E-11 8.3E-16 130.8 18.0 160 33-250 172-340 (435)
88 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.4E-11 3.1E-16 117.9 12.9 152 35-252 4-168 (183)
89 cd04120 Rab12 Rab12 subfamily. 99.3 7.9E-12 1.7E-16 121.5 11.0 103 136-251 49-160 (202)
90 cd01860 Rab5_related Rab5-rela 99.3 6.9E-12 1.5E-16 117.1 10.2 148 36-250 3-159 (163)
91 cd01881 Obg_like The Obg-like 99.3 9.6E-12 2.1E-16 117.5 11.2 106 136-247 44-170 (176)
92 PLN03118 Rab family protein; P 99.3 1E-11 2.2E-16 121.7 11.7 108 137-257 63-180 (211)
93 cd04144 Ras2 Ras2 subfamily. 99.3 1E-11 2.2E-16 119.7 11.4 107 137-256 48-165 (190)
94 cd04139 RalA_RalB RalA/RalB su 99.3 1.1E-11 2.4E-16 115.5 11.4 148 36-250 2-158 (164)
95 PF10662 PduV-EutP: Ethanolami 99.3 9.8E-12 2.1E-16 112.1 10.2 98 140-249 40-141 (143)
96 cd04140 ARHI_like ARHI subfami 99.3 1E-11 2.3E-16 116.5 10.7 100 137-250 50-161 (165)
97 cd04104 p47_IIGP_like p47 (47- 99.3 1.5E-11 3.3E-16 119.2 12.0 25 35-59 2-26 (197)
98 COG2262 HflX GTPases [General 99.3 3.5E-11 7.6E-16 124.0 15.0 159 32-254 190-356 (411)
99 cd04125 RabA_like RabA-like su 99.3 1.2E-11 2.6E-16 118.8 11.0 104 137-253 50-161 (188)
100 cd04176 Rap2 Rap2 subgroup. T 99.3 1E-11 2.3E-16 116.1 10.2 100 137-249 50-158 (163)
101 PRK09518 bifunctional cytidyla 99.3 2.1E-11 4.5E-16 140.2 14.5 157 33-253 274-435 (712)
102 cd04159 Arl10_like Arl10-like 99.3 2.1E-11 4.5E-16 112.6 11.8 100 136-249 44-156 (159)
103 cd04154 Arl2 Arl2 subfamily. 99.3 1.9E-11 4.1E-16 115.8 11.8 145 33-248 13-169 (173)
104 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 2E-11 4.4E-16 115.6 11.7 149 35-251 3-161 (172)
105 cd01853 Toc34_like Toc34-like 99.3 3.9E-11 8.4E-16 120.0 14.1 124 33-214 30-166 (249)
106 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.2E-11 2.6E-16 116.8 9.8 99 137-247 52-162 (170)
107 cd04160 Arfrp1 Arfrp1 subfamil 99.3 2.6E-11 5.7E-16 113.7 11.8 101 136-249 50-164 (167)
108 PTZ00369 Ras-like protein; Pro 99.3 2.4E-11 5.1E-16 117.0 11.5 101 137-251 54-164 (189)
109 cd01863 Rab18 Rab18 subfamily. 99.3 2.6E-11 5.5E-16 113.1 11.3 98 137-248 50-156 (161)
110 cd04124 RabL2 RabL2 subfamily. 99.3 1.8E-11 3.8E-16 114.6 10.2 99 137-251 50-155 (161)
111 PRK09518 bifunctional cytidyla 99.3 6.9E-11 1.5E-15 135.9 17.1 160 33-251 449-618 (712)
112 cd04114 Rab30 Rab30 subfamily. 99.3 2.6E-11 5.6E-16 114.0 11.0 151 33-250 6-165 (169)
113 cd04158 ARD1 ARD1 subfamily. 99.3 4E-11 8.6E-16 113.2 12.3 108 136-256 43-163 (169)
114 cd00876 Ras Ras family. The R 99.3 2.3E-11 5.1E-16 112.8 10.4 147 36-249 1-156 (160)
115 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 6.4E-12 1.4E-16 116.1 6.3 158 33-258 21-189 (221)
116 COG3596 Predicted GTPase [Gene 99.3 9.9E-12 2.1E-16 121.6 8.0 122 33-215 37-166 (296)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.3 5.4E-11 1.2E-15 110.7 12.7 101 136-249 44-157 (160)
118 cd04147 Ras_dva Ras-dva subfam 99.3 2.6E-11 5.6E-16 117.7 10.9 110 137-259 48-168 (198)
119 COG1163 DRG Predicted GTPase [ 99.3 1.8E-11 3.9E-16 121.9 9.8 90 33-183 62-151 (365)
120 cd01893 Miro1 Miro1 subfamily. 99.3 2.6E-11 5.6E-16 114.0 10.6 100 137-249 48-159 (166)
121 TIGR00991 3a0901s02IAP34 GTP-b 99.3 7.2E-11 1.6E-15 119.8 14.3 121 32-213 36-169 (313)
122 smart00178 SAR Sar1p-like memb 99.3 7.9E-11 1.7E-15 112.9 13.8 147 33-250 16-181 (184)
123 cd04123 Rab21 Rab21 subfamily. 99.3 3.9E-11 8.5E-16 111.5 11.3 101 137-250 50-158 (162)
124 cd04118 Rab24 Rab24 subfamily. 99.2 3.8E-11 8.2E-16 115.8 11.2 103 137-253 51-165 (193)
125 cd00879 Sar1 Sar1 subfamily. 99.2 7.9E-11 1.7E-15 113.2 13.3 147 33-250 18-187 (190)
126 cd04177 RSR1 RSR1 subgroup. R 99.2 4E-11 8.6E-16 112.9 10.9 100 137-249 50-159 (168)
127 cd04121 Rab40 Rab40 subfamily. 99.2 3.7E-11 8.1E-16 115.6 10.8 104 137-253 56-166 (189)
128 cd04116 Rab9 Rab9 subfamily. 99.2 3.9E-11 8.5E-16 113.0 10.8 150 33-249 4-166 (170)
129 PLN03071 GTP-binding nuclear p 99.2 2.7E-11 5.8E-16 119.5 10.0 102 137-253 63-171 (219)
130 cd04151 Arl1 Arl1 subfamily. 99.2 7E-11 1.5E-15 110.0 12.2 99 137-249 44-155 (158)
131 cd04117 Rab15 Rab15 subfamily. 99.2 3.4E-11 7.4E-16 112.7 10.1 148 36-249 2-157 (161)
132 PLN03110 Rab GTPase; Provision 99.2 3.8E-11 8.2E-16 118.2 10.7 154 34-253 12-173 (216)
133 cd00157 Rho Rho (Ras homology) 99.2 2.3E-11 5E-16 114.4 8.7 99 137-248 49-167 (171)
134 PLN03108 Rab family protein; P 99.2 4.9E-11 1.1E-15 116.9 11.1 151 34-250 6-164 (210)
135 cd04161 Arl2l1_Arl13_like Arl2 99.2 5.9E-11 1.3E-15 111.8 11.1 65 136-213 43-116 (167)
136 cd00878 Arf_Arl Arf (ADP-ribos 99.2 6.7E-11 1.4E-15 110.0 11.2 99 136-248 43-154 (158)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 6.3E-11 1.4E-15 112.4 11.1 145 34-249 15-171 (174)
138 cd04137 RheB Rheb (Ras Homolog 99.2 7.1E-11 1.5E-15 112.4 11.3 151 36-253 3-162 (180)
139 cd04132 Rho4_like Rho4-like su 99.2 6.8E-11 1.5E-15 113.3 11.2 155 36-256 2-169 (187)
140 KOG0448 Mitofusin 1 GTPase, in 99.2 8.2E-10 1.8E-14 119.5 19.9 178 8-218 95-282 (749)
141 cd04149 Arf6 Arf6 subfamily. 99.2 1.3E-10 2.8E-15 109.6 12.5 100 137-249 54-165 (168)
142 PF00009 GTP_EFTU: Elongation 99.2 1.5E-11 3.3E-16 118.2 6.2 103 133-250 67-183 (188)
143 smart00174 RHO Rho (Ras homolo 99.2 4.3E-11 9.4E-16 113.1 9.1 100 137-249 47-167 (174)
144 cd01876 YihA_EngB The YihA (En 99.2 1.6E-10 3.6E-15 107.6 12.8 153 36-249 1-166 (170)
145 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.3E-10 2.9E-15 109.1 12.2 108 36-213 1-115 (164)
146 cd00877 Ran Ran (Ras-related n 99.2 4.3E-11 9.3E-16 112.7 8.7 102 137-253 50-158 (166)
147 cd04166 CysN_ATPS CysN_ATPS su 99.2 7.9E-11 1.7E-15 115.2 10.6 99 134-245 75-185 (208)
148 cd04150 Arf1_5_like Arf1-Arf5- 99.2 1.3E-10 2.8E-15 108.6 11.2 101 136-249 44-156 (159)
149 cd01891 TypA_BipA TypA (tyrosi 99.2 1.4E-10 3E-15 112.2 11.4 96 136-244 65-172 (194)
150 cd01896 DRG The developmentall 99.2 1.9E-10 4.1E-15 114.4 12.5 24 36-59 2-25 (233)
151 smart00177 ARF ARF-like small 99.2 2E-10 4.3E-15 109.1 12.0 101 136-250 57-170 (175)
152 cd04148 RGK RGK subfamily. Th 99.2 3E-10 6.5E-15 112.2 13.7 103 137-254 51-163 (221)
153 cd01874 Cdc42 Cdc42 subfamily. 99.2 1.2E-10 2.5E-15 110.7 10.4 147 35-249 2-170 (175)
154 PRK09602 translation-associate 99.2 5.4E-10 1.2E-14 119.0 16.4 112 35-183 2-113 (396)
155 TIGR00491 aIF-2 translation in 99.2 2.5E-10 5.3E-15 127.1 14.2 129 33-211 3-135 (590)
156 KOG1954 Endocytosis/signaling 99.2 6.5E-11 1.4E-15 119.0 8.6 165 32-214 56-228 (532)
157 cd01889 SelB_euk SelB subfamil 99.2 1.8E-10 4E-15 111.1 11.2 103 136-251 68-183 (192)
158 cd04146 RERG_RasL11_like RERG/ 99.2 1.1E-10 2.4E-15 109.5 9.3 102 137-250 48-160 (165)
159 cd04128 Spg1 Spg1p. Spg1p (se 99.2 1.5E-10 3.2E-15 110.8 10.3 102 137-251 50-163 (182)
160 cd04126 Rab20 Rab20 subfamily. 99.2 2.9E-10 6.2E-15 111.9 12.2 62 137-211 45-114 (220)
161 TIGR00231 small_GTP small GTP- 99.1 3.3E-10 7.2E-15 103.9 11.9 29 35-64 2-30 (161)
162 TIGR00487 IF-2 translation ini 99.1 2.6E-10 5.6E-15 127.2 12.9 151 32-249 85-245 (587)
163 PTZ00133 ADP-ribosylation fact 99.1 4.2E-10 9.1E-15 107.7 12.7 102 136-251 61-175 (182)
164 cd04155 Arl3 Arl3 subfamily. 99.1 3.8E-10 8.2E-15 106.5 12.3 145 33-249 13-170 (173)
165 cd01892 Miro2 Miro2 subfamily. 99.1 1.4E-10 2.9E-15 109.6 9.2 149 33-250 3-162 (169)
166 PLN00223 ADP-ribosylation fact 99.1 5.6E-10 1.2E-14 106.7 13.4 102 137-252 62-176 (181)
167 CHL00189 infB translation init 99.1 1.9E-10 4E-15 130.1 11.7 155 32-251 242-407 (742)
168 cd01888 eIF2_gamma eIF2-gamma 99.1 2.2E-10 4.8E-15 111.6 10.5 103 136-251 83-196 (203)
169 PRK05306 infB translation init 99.1 3.1E-10 6.8E-15 129.5 12.8 150 32-249 288-447 (787)
170 cd04143 Rhes_like Rhes_like su 99.1 4.4E-10 9.5E-15 112.7 12.0 102 137-251 49-168 (247)
171 cd04134 Rho3 Rho3 subfamily. 99.1 2.2E-10 4.7E-15 110.3 9.5 102 137-251 49-171 (189)
172 cd01870 RhoA_like RhoA-like su 99.1 4E-10 8.7E-15 106.6 10.9 111 35-212 2-120 (175)
173 TIGR00437 feoB ferrous iron tr 99.1 2.4E-10 5.3E-15 128.0 10.9 108 137-252 42-153 (591)
174 COG0699 Predicted GTPases (dyn 99.1 2.2E-08 4.8E-13 112.2 26.8 467 86-595 3-542 (546)
175 KOG1489 Predicted GTP-binding 99.1 2E-10 4.4E-15 114.0 8.8 153 33-248 195-361 (366)
176 TIGR00475 selB selenocysteine- 99.1 2.8E-10 6.1E-15 127.4 11.1 105 136-253 50-165 (581)
177 PF05049 IIGP: Interferon-indu 99.1 3.5E-10 7.7E-15 117.8 10.7 128 5-209 18-153 (376)
178 cd01871 Rac1_like Rac1-like su 99.1 6.6E-10 1.4E-14 105.5 11.5 100 137-249 50-170 (174)
179 TIGR00993 3a0901s04IAP86 chlor 99.1 6.7E-10 1.5E-14 121.2 12.5 120 35-212 119-251 (763)
180 cd00882 Ras_like_GTPase Ras-li 99.1 4.4E-10 9.6E-15 101.8 9.5 99 136-247 45-153 (157)
181 cd04165 GTPBP1_like GTPBP1-lik 99.1 5.5E-10 1.2E-14 110.3 10.5 66 134-212 82-153 (224)
182 KOG0084 GTPase Rab1/YPT1, smal 99.1 4.4E-10 9.6E-15 104.5 9.0 159 32-256 7-174 (205)
183 cd04133 Rop_like Rop subfamily 99.1 5.5E-10 1.2E-14 106.2 9.5 148 36-250 3-169 (176)
184 cd04130 Wrch_1 Wrch-1 subfamil 99.1 5.4E-10 1.2E-14 105.7 9.5 99 137-248 49-168 (173)
185 cd04135 Tc10 TC10 subfamily. 99.1 7.5E-10 1.6E-14 104.6 10.3 99 137-248 49-168 (174)
186 cd01850 CDC_Septin CDC/Septin. 99.1 1E-09 2.2E-14 111.8 11.8 133 35-212 5-158 (276)
187 cd01886 EF-G Elongation factor 99.1 7E-10 1.5E-14 112.6 10.6 63 136-211 64-130 (270)
188 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 1.2E-09 2.6E-14 108.2 11.9 112 33-211 12-131 (232)
189 KOG0092 GTPase Rab5/YPT51 and 99.1 2E-10 4.4E-15 106.3 5.8 158 34-258 5-171 (200)
190 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 7.6E-10 1.6E-14 105.8 9.9 148 34-248 5-174 (182)
191 cd01875 RhoG RhoG subfamily. 99.0 9.5E-10 2.1E-14 106.1 10.5 150 35-251 4-174 (191)
192 smart00176 RAN Ran (Ras-relate 99.0 7.3E-10 1.6E-14 107.5 9.5 103 137-254 45-154 (200)
193 cd04131 Rnd Rnd subfamily. Th 99.0 7.1E-10 1.5E-14 105.7 9.2 109 36-211 3-119 (178)
194 PF00071 Ras: Ras family; Int 99.0 5.8E-10 1.3E-14 104.0 8.1 147 36-249 1-156 (162)
195 cd04168 TetM_like Tet(M)-like 99.0 1.4E-09 2.9E-14 108.5 11.0 63 136-211 64-130 (237)
196 cd01884 EF_Tu EF-Tu subfamily. 99.0 6.5E-10 1.4E-14 107.4 8.3 65 134-212 63-133 (195)
197 KOG0078 GTP-binding protein SE 99.0 8.2E-10 1.8E-14 104.2 8.7 158 31-254 9-174 (207)
198 TIGR01393 lepA GTP-binding pro 99.0 1.7E-09 3.6E-14 121.3 12.6 166 34-252 3-178 (595)
199 cd01899 Ygr210 Ygr210 subfamil 99.0 1.5E-09 3.3E-14 112.2 11.3 110 37-183 1-110 (318)
200 cd04169 RF3 RF3 subfamily. Pe 99.0 2.2E-09 4.7E-14 108.9 11.7 132 35-212 3-138 (267)
201 cd04105 SR_beta Signal recogni 99.0 3.3E-09 7.1E-14 103.3 11.4 64 137-213 49-125 (203)
202 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 4.5E-09 9.8E-14 103.5 12.4 110 36-212 3-120 (222)
203 PRK05433 GTP-binding protein L 99.0 3.6E-09 7.8E-14 118.7 13.1 168 33-253 6-183 (600)
204 PRK12317 elongation factor 1-a 99.0 5.7E-09 1.2E-13 113.3 14.3 99 135-246 83-197 (425)
205 PRK04004 translation initiatio 99.0 3.6E-09 7.7E-14 118.3 12.9 62 136-210 71-136 (586)
206 PRK10512 selenocysteinyl-tRNA- 99.0 2E-09 4.4E-14 120.9 10.9 103 135-253 50-165 (614)
207 cd04170 EF-G_bact Elongation f 98.9 3.4E-09 7.5E-14 107.8 10.6 64 136-212 64-131 (268)
208 cd01885 EF2 EF2 (for archaea a 98.9 4.2E-09 9.1E-14 103.6 10.7 62 136-210 73-138 (222)
209 cd01883 EF1_alpha Eukaryotic e 98.9 1.3E-09 2.9E-14 107.4 6.6 96 135-243 76-194 (219)
210 cd04167 Snu114p Snu114p subfam 98.9 5E-09 1.1E-13 102.8 10.4 62 136-210 71-136 (213)
211 PF00025 Arf: ADP-ribosylation 98.9 4.3E-09 9.4E-14 100.0 9.2 101 137-250 59-172 (175)
212 COG0536 Obg Predicted GTPase [ 98.9 6E-09 1.3E-13 105.0 10.4 156 36-255 161-334 (369)
213 cd04102 RabL3 RabL3 (Rab-like3 98.9 1.5E-08 3.2E-13 98.4 12.5 90 137-239 55-175 (202)
214 cd04129 Rho2 Rho2 subfamily. 98.9 6E-09 1.3E-13 100.1 9.2 101 137-250 50-169 (187)
215 cd01873 RhoBTB RhoBTB subfamil 98.9 8.1E-09 1.7E-13 99.9 9.3 97 137-248 67-190 (195)
216 COG4917 EutP Ethanolamine util 98.9 6.2E-09 1.3E-13 89.6 7.3 137 35-250 2-142 (148)
217 TIGR03680 eif2g_arch translati 98.9 8E-09 1.7E-13 111.3 10.0 101 136-250 80-192 (406)
218 cd01900 YchF YchF subfamily. 98.9 8.3E-09 1.8E-13 104.3 9.2 102 37-182 1-102 (274)
219 TIGR02034 CysN sulfate adenyly 98.9 8.8E-09 1.9E-13 110.9 10.0 97 135-245 79-188 (406)
220 CHL00071 tufA elongation facto 98.8 9.1E-09 2E-13 110.9 10.1 66 134-213 73-144 (409)
221 PTZ00258 GTP-binding protein; 98.8 1.3E-08 2.8E-13 107.4 10.9 106 33-182 20-125 (390)
222 KOG1490 GTP-binding protein CR 98.8 1.1E-08 2.4E-13 107.1 9.8 130 25-214 159-298 (620)
223 PRK05124 cysN sulfate adenylyl 98.8 2.3E-08 4.9E-13 109.5 12.7 98 134-245 105-216 (474)
224 PRK09435 membrane ATPase/prote 98.8 5E-08 1.1E-12 101.2 14.4 109 136-266 149-269 (332)
225 cd04103 Centaurin_gamma Centau 98.8 1.2E-08 2.7E-13 95.1 9.0 96 137-250 48-155 (158)
226 PRK05506 bifunctional sulfate 98.8 1.9E-08 4.1E-13 114.5 11.5 97 134-244 102-211 (632)
227 COG1100 GTPase SAR1 and relate 98.8 4.3E-08 9.4E-13 96.3 11.8 112 35-214 6-128 (219)
228 KOG0095 GTPase Rab30, small G 98.8 1.5E-08 3.2E-13 89.5 7.4 116 33-214 6-129 (213)
229 PRK09601 GTP-binding protein Y 98.8 2.9E-08 6.2E-13 103.6 10.9 104 35-182 3-106 (364)
230 PTZ00132 GTP-binding nuclear p 98.8 4.2E-08 9.2E-13 96.3 11.0 101 137-252 59-166 (215)
231 KOG0075 GTP-binding ADP-ribosy 98.8 4.4E-08 9.6E-13 86.6 9.7 102 134-249 63-177 (186)
232 PF00735 Septin: Septin; Inte 98.8 9.1E-09 2E-13 104.8 6.3 136 35-213 5-158 (281)
233 PRK12735 elongation factor Tu; 98.8 2.9E-08 6.3E-13 106.6 10.4 66 134-212 73-143 (396)
234 TIGR00484 EF-G translation elo 98.8 2.9E-08 6.3E-13 114.0 10.7 130 33-212 9-142 (689)
235 PF08477 Miro: Miro-like prote 98.8 1E-08 2.2E-13 90.4 5.5 24 36-59 1-24 (119)
236 TIGR00483 EF-1_alpha translati 98.8 5.2E-08 1.1E-12 105.8 12.1 97 136-245 85-198 (426)
237 KOG0093 GTPase Rab3, small G p 98.7 2.9E-08 6.2E-13 87.7 7.8 115 33-213 20-142 (193)
238 KOG0091 GTPase Rab39, small G 98.7 1.6E-08 3.5E-13 90.9 6.1 154 33-251 7-170 (213)
239 PRK04000 translation initiatio 98.7 3.9E-08 8.5E-13 105.9 10.2 102 136-250 85-197 (411)
240 TIGR01394 TypA_BipA GTP-bindin 98.7 3.9E-08 8.5E-13 110.1 10.1 64 136-212 64-131 (594)
241 PRK12739 elongation factor G; 98.7 4.9E-08 1.1E-12 112.1 10.5 129 33-212 7-140 (691)
242 PRK00741 prfC peptide chain re 98.7 9.8E-08 2.1E-12 105.5 12.3 134 33-212 9-146 (526)
243 KOG0098 GTPase Rab2, small G p 98.7 5.2E-08 1.1E-12 89.8 8.3 144 33-244 5-158 (216)
244 KOG0073 GTP-binding ADP-ribosy 98.7 2E-07 4.4E-12 84.2 11.7 151 34-256 16-180 (185)
245 PRK00007 elongation factor G; 98.7 5.5E-08 1.2E-12 111.6 10.1 130 33-213 9-143 (693)
246 COG0532 InfB Translation initi 98.7 1.4E-07 3.1E-12 100.8 12.3 152 33-252 4-168 (509)
247 TIGR00750 lao LAO/AO transport 98.7 6.6E-07 1.4E-11 92.5 17.1 101 135-252 126-236 (300)
248 TIGR02836 spore_IV_A stage IV 98.7 1.5E-07 3.3E-12 97.9 12.1 144 35-212 18-195 (492)
249 PRK10218 GTP-binding protein; 98.7 9.3E-08 2E-12 107.0 11.4 64 136-212 68-135 (607)
250 PLN03127 Elongation factor Tu; 98.7 8.1E-08 1.8E-12 104.2 10.5 126 34-212 61-192 (447)
251 PLN03126 Elongation factor Tu; 98.7 8.9E-08 1.9E-12 104.5 10.2 64 135-212 143-212 (478)
252 TIGR00503 prfC peptide chain r 98.7 1.1E-07 2.4E-12 105.2 11.0 64 135-211 79-146 (527)
253 PF09439 SRPRB: Signal recogni 98.7 5.8E-08 1.3E-12 91.6 7.4 113 33-213 2-128 (181)
254 PTZ00327 eukaryotic translatio 98.6 1.2E-07 2.5E-12 102.9 10.4 100 137-250 118-229 (460)
255 TIGR00485 EF-Tu translation el 98.6 8.1E-08 1.7E-12 103.2 9.1 127 34-212 12-143 (394)
256 KOG0394 Ras-related GTPase [Ge 98.6 5.6E-08 1.2E-12 89.4 6.6 154 33-252 8-176 (210)
257 cd01858 NGP_1 NGP-1. Autoanti 98.6 7E-08 1.5E-12 89.9 7.3 30 35-64 103-132 (157)
258 PLN00023 GTP-binding protein; 98.6 1.4E-07 3E-12 96.7 9.9 63 137-212 84-166 (334)
259 PRK00049 elongation factor Tu; 98.6 1.3E-07 2.8E-12 101.5 9.4 64 135-211 74-142 (396)
260 PRK12736 elongation factor Tu; 98.6 1.7E-07 3.6E-12 100.7 10.1 64 135-212 74-143 (394)
261 PRK07560 elongation factor EF- 98.6 1.9E-07 4E-12 107.9 11.1 129 33-210 19-152 (731)
262 COG2229 Predicted GTPase [Gene 98.6 8.7E-07 1.9E-11 82.1 12.8 146 32-242 8-166 (187)
263 KOG0080 GTPase Rab18, small G 98.6 6.8E-08 1.5E-12 86.6 5.3 159 33-259 10-179 (209)
264 TIGR00490 aEF-2 translation el 98.6 1.9E-07 4.2E-12 107.6 10.6 64 135-211 85-152 (720)
265 PRK13351 elongation factor G; 98.6 4E-07 8.6E-12 104.8 12.2 130 33-212 7-140 (687)
266 KOG0079 GTP-binding protein H- 98.5 3.4E-08 7.5E-13 87.2 2.6 116 32-213 6-128 (198)
267 KOG0410 Predicted GTP binding 98.5 1.3E-07 2.7E-12 94.5 6.8 151 31-250 175-337 (410)
268 KOG2486 Predicted GTPase [Gene 98.5 2.7E-07 5.9E-12 90.6 8.9 160 31-248 133-310 (320)
269 cd04178 Nucleostemin_like Nucl 98.5 1E-07 2.2E-12 90.1 5.5 31 34-64 117-147 (172)
270 PTZ00141 elongation factor 1- 98.5 3.1E-07 6.6E-12 99.9 9.6 97 135-244 84-203 (446)
271 PLN00043 elongation factor 1-a 98.5 4.6E-07 1E-11 98.5 10.6 97 135-244 84-203 (447)
272 cd01849 YlqF_related_GTPase Yl 98.5 1.6E-07 3.4E-12 87.4 6.0 40 33-72 99-139 (155)
273 PTZ00416 elongation factor 2; 98.5 5.1E-07 1.1E-11 105.5 11.2 61 137-210 93-157 (836)
274 KOG1145 Mitochondrial translat 98.5 1E-06 2.2E-11 93.6 12.2 149 31-249 150-311 (683)
275 cd01882 BMS1 Bms1. Bms1 is an 98.5 7.9E-07 1.7E-11 88.0 10.8 64 133-213 80-149 (225)
276 PLN00116 translation elongatio 98.5 6E-07 1.3E-11 105.1 11.5 61 137-210 99-163 (843)
277 KOG2655 Septin family protein 98.5 5.2E-07 1.1E-11 93.0 8.9 78 137-214 80-175 (366)
278 COG5019 CDC3 Septin family pro 98.4 6.6E-07 1.4E-11 91.6 8.9 78 137-214 83-179 (373)
279 KOG1547 Septin CDC10 and relat 98.4 7.6E-07 1.6E-11 85.3 8.2 75 137-211 105-198 (336)
280 COG5256 TEF1 Translation elong 98.4 1.8E-06 3.8E-11 89.7 10.8 97 136-245 85-202 (428)
281 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 4.8E-07 1E-11 82.7 5.8 25 35-59 84-108 (141)
282 KOG0395 Ras-related GTPase [Ge 98.4 2E-06 4.4E-11 83.0 10.2 150 34-250 3-161 (196)
283 cd01855 YqeH YqeH. YqeH is an 98.4 4.2E-07 9.2E-12 87.5 5.1 25 35-59 128-152 (190)
284 KOG0087 GTPase Rab11/YPT3, sma 98.4 8.5E-07 1.8E-11 83.7 6.8 115 31-211 11-133 (222)
285 KOG0086 GTPase Rab4, small G p 98.3 1.9E-06 4.1E-11 76.7 7.7 117 31-213 6-130 (214)
286 TIGR03596 GTPase_YlqF ribosome 98.3 1.8E-06 3.8E-11 88.3 8.1 32 33-64 117-148 (276)
287 PF03029 ATP_bind_1: Conserved 98.2 2.1E-06 4.6E-11 85.4 7.4 18 39-56 1-18 (238)
288 PRK13768 GTPase; Provisional 98.2 5.3E-06 1.2E-10 83.6 9.9 71 137-214 98-179 (253)
289 PRK12288 GTPase RsgA; Reviewed 98.2 3.2E-06 6.9E-11 88.8 8.6 27 36-62 207-233 (347)
290 PRK12740 elongation factor G; 98.2 2.6E-06 5.5E-11 98.0 8.5 64 136-212 60-127 (668)
291 cd01856 YlqF YlqF. Proteins o 98.2 4.2E-06 9E-11 79.2 8.5 28 33-60 114-141 (171)
292 TIGR00157 ribosome small subun 98.2 3.1E-06 6.8E-11 84.8 8.0 27 35-61 121-147 (245)
293 COG0012 Predicted GTPase, prob 98.2 4E-06 8.6E-11 86.5 8.6 106 35-183 3-108 (372)
294 KOG0097 GTPase Rab14, small G 98.2 5.1E-06 1.1E-10 72.9 7.8 148 31-244 8-163 (215)
295 PRK12289 GTPase RsgA; Reviewed 98.2 2.6E-06 5.7E-11 89.4 7.3 28 36-63 174-201 (352)
296 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.7E-06 3.7E-11 88.9 5.6 31 33-63 120-150 (287)
297 KOG4252 GTP-binding protein [S 98.2 4E-07 8.6E-12 83.2 0.5 64 137-213 70-140 (246)
298 cd01851 GBP Guanylate-binding 98.2 7.1E-06 1.5E-10 81.1 9.3 36 33-69 6-45 (224)
299 KOG0070 GTP-binding ADP-ribosy 98.1 6.2E-06 1.3E-10 76.6 7.6 147 33-251 16-175 (181)
300 COG0480 FusA Translation elong 98.1 8.1E-06 1.8E-10 92.4 10.1 132 33-213 9-144 (697)
301 COG1161 Predicted GTPases [Gen 98.1 2.3E-06 5E-11 89.1 5.4 25 35-59 133-157 (322)
302 PF03193 DUF258: Protein of un 98.1 2.1E-06 4.5E-11 79.5 4.4 28 35-62 36-63 (161)
303 KOG0090 Signal recognition par 98.1 6.3E-06 1.4E-10 78.1 7.4 65 137-214 83-162 (238)
304 KOG3883 Ras family small GTPas 98.1 2.9E-05 6.2E-10 69.5 11.1 64 137-214 61-135 (198)
305 KOG0081 GTPase Rab27, small G 98.1 1E-06 2.2E-11 79.0 1.7 100 137-249 68-176 (219)
306 TIGR00092 GTP-binding protein 98.1 1.1E-05 2.3E-10 84.6 9.1 104 35-182 3-107 (368)
307 KOG0462 Elongation factor-type 98.1 1.2E-05 2.6E-10 85.7 9.4 167 33-250 59-231 (650)
308 KOG1707 Predicted Ras related/ 98.1 1E-05 2.2E-10 87.0 8.8 114 34-215 9-133 (625)
309 PTZ00099 rab6; Provisional 98.1 5.5E-06 1.2E-10 78.7 6.2 110 136-259 29-147 (176)
310 KOG1486 GTP-binding protein DR 98.0 3.5E-06 7.5E-11 81.4 3.5 26 33-58 61-86 (364)
311 PF04670 Gtr1_RagA: Gtr1/RagA 98.0 2.1E-05 4.6E-10 77.6 8.9 115 36-213 1-127 (232)
312 KOG1532 GTPase XAB1, interacts 98.0 3.5E-05 7.7E-10 75.6 10.2 25 33-57 18-42 (366)
313 cd03114 ArgK-like The function 98.0 5.1E-05 1.1E-09 69.9 10.8 57 136-208 92-148 (148)
314 PRK11889 flhF flagellar biosyn 98.0 2.4E-05 5.1E-10 82.1 9.4 76 137-221 322-401 (436)
315 PRK13796 GTPase YqeH; Provisio 98.0 7.2E-06 1.6E-10 87.0 5.4 24 35-58 161-184 (365)
316 KOG1491 Predicted GTP-binding 98.0 2.2E-05 4.8E-10 79.4 8.3 106 33-182 19-124 (391)
317 TIGR01425 SRP54_euk signal rec 98.0 6.9E-05 1.5E-09 80.2 12.5 78 136-220 183-262 (429)
318 TIGR00073 hypB hydrogenase acc 98.0 3.9E-05 8.4E-10 74.9 9.7 56 196-251 147-204 (207)
319 PF03308 ArgK: ArgK protein; 98.0 2.9E-05 6.2E-10 76.7 8.5 95 137-251 123-227 (266)
320 cd01859 MJ1464 MJ1464. This f 97.9 4E-05 8.7E-10 71.1 9.0 27 33-59 100-126 (156)
321 cd03112 CobW_like The function 97.9 3.6E-05 7.8E-10 71.8 8.5 23 35-57 1-23 (158)
322 TIGR03597 GTPase_YqeH ribosome 97.9 9E-06 2E-10 86.2 5.0 24 35-58 155-178 (360)
323 PRK00098 GTPase RsgA; Reviewed 97.9 3.3E-05 7.2E-10 79.8 9.0 25 35-59 165-189 (298)
324 COG1162 Predicted GTPases [Gen 97.9 2.5E-05 5.4E-10 78.9 7.6 23 35-57 165-187 (301)
325 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3.4E-05 7.4E-10 79.2 8.8 26 35-60 162-187 (287)
326 PRK12726 flagellar biosynthesi 97.9 3.8E-05 8.3E-10 80.3 8.8 75 137-220 287-365 (407)
327 TIGR00101 ureG urease accessor 97.9 8.3E-05 1.8E-09 72.1 10.4 99 136-250 92-192 (199)
328 PRK14845 translation initiatio 97.9 4.9E-05 1.1E-09 89.4 10.4 104 135-252 525-671 (1049)
329 PF00448 SRP54: SRP54-type pro 97.9 2.1E-05 4.7E-10 75.9 5.7 77 137-220 85-163 (196)
330 KOG1144 Translation initiation 97.8 8.2E-05 1.8E-09 81.7 10.3 129 32-210 473-605 (1064)
331 PRK14723 flhF flagellar biosyn 97.8 3.3E-05 7.2E-10 87.7 7.3 149 36-221 187-347 (767)
332 PRK14722 flhF flagellar biosyn 97.8 2.3E-05 5.1E-10 82.5 5.7 24 34-57 137-160 (374)
333 PRK14721 flhF flagellar biosyn 97.8 3.2E-05 7E-10 82.7 6.8 79 136-221 270-350 (420)
334 PRK10416 signal recognition pa 97.8 0.00039 8.5E-09 72.2 14.6 80 136-220 197-282 (318)
335 KOG0076 GTP-binding ADP-ribosy 97.8 2.5E-05 5.5E-10 71.5 4.6 103 136-251 69-184 (197)
336 PRK14974 cell division protein 97.8 0.00011 2.4E-09 76.6 10.0 73 137-220 224-302 (336)
337 KOG0468 U5 snRNP-specific prot 97.8 8.9E-05 1.9E-09 80.6 9.4 129 34-210 128-262 (971)
338 KOG0088 GTPase Rab21, small G 97.8 3.8E-05 8.3E-10 69.0 5.6 113 34-212 13-133 (218)
339 KOG1424 Predicted GTP-binding 97.8 1.9E-05 4.2E-10 83.8 4.2 26 34-59 314-339 (562)
340 PRK06731 flhF flagellar biosyn 97.8 0.0002 4.4E-09 72.4 11.5 76 136-220 155-234 (270)
341 COG1217 TypA Predicted membran 97.8 6.4E-05 1.4E-09 78.9 7.7 66 136-214 68-137 (603)
342 PRK12727 flagellar biosynthesi 97.7 8.8E-05 1.9E-09 80.8 8.4 24 34-57 350-373 (559)
343 TIGR00064 ftsY signal recognit 97.7 0.0011 2.3E-08 67.6 15.3 79 136-220 155-240 (272)
344 PRK05703 flhF flagellar biosyn 97.7 0.00019 4.1E-09 77.6 10.3 79 136-221 300-381 (424)
345 KOG0458 Elongation factor 1 al 97.7 0.0003 6.6E-09 76.0 11.6 99 133-244 252-372 (603)
346 COG1703 ArgK Putative periplas 97.6 0.0034 7.4E-08 63.1 17.6 96 137-251 145-251 (323)
347 COG4108 PrfC Peptide chain rel 97.6 0.0002 4.4E-09 74.8 9.0 132 33-212 11-148 (528)
348 KOG1143 Predicted translation 97.6 8.5E-05 1.8E-09 75.7 5.7 143 36-214 169-320 (591)
349 KOG0071 GTP-binding ADP-ribosy 97.6 0.00041 8.9E-09 61.4 9.2 99 137-249 62-173 (180)
350 PRK12723 flagellar biosynthesi 97.6 0.00041 9E-09 73.7 11.0 76 136-221 255-336 (388)
351 COG0481 LepA Membrane GTPase L 97.6 0.00027 5.8E-09 74.5 8.9 167 34-252 9-184 (603)
352 COG3276 SelB Selenocysteine-sp 97.6 0.00031 6.7E-09 73.8 9.2 102 137-253 51-161 (447)
353 KOG0074 GTP-binding ADP-ribosy 97.5 0.00058 1.3E-08 60.5 9.4 111 33-213 16-135 (185)
354 TIGR03348 VI_IcmF type VI secr 97.5 0.00041 9E-09 84.4 11.3 56 4-63 83-138 (1169)
355 PRK12724 flagellar biosynthesi 97.5 0.00044 9.6E-09 73.5 9.5 79 136-220 300-382 (432)
356 KOG2485 Conserved ATP/GTP bind 97.5 0.00011 2.5E-09 73.7 4.7 26 33-58 142-167 (335)
357 COG5257 GCD11 Translation init 97.5 0.00037 8.1E-09 70.1 7.8 175 36-251 12-199 (415)
358 COG0050 TufB GTPases - transla 97.5 0.00036 7.7E-09 69.4 7.6 127 35-213 13-144 (394)
359 KOG3859 Septins (P-loop GTPase 97.4 0.00041 8.8E-09 68.3 7.5 131 34-213 42-192 (406)
360 KOG0083 GTPase Rab26/Rab37, sm 97.4 3.8E-05 8.3E-10 66.9 0.3 97 137-250 48-156 (192)
361 COG5192 BMS1 GTP-binding prote 97.4 0.00042 9.1E-09 74.0 7.9 63 135-214 112-180 (1077)
362 cd03115 SRP The signal recogni 97.4 0.0036 7.9E-08 59.0 13.1 76 136-219 83-161 (173)
363 KOG0077 Vesicle coat complex C 97.3 0.00072 1.6E-08 61.7 7.3 64 137-213 65-137 (193)
364 KOG2484 GTPase [General functi 97.3 0.00034 7.3E-09 72.4 5.2 48 14-65 236-283 (435)
365 PRK10463 hydrogenase nickel in 97.2 0.0012 2.5E-08 67.2 8.5 55 197-251 230-286 (290)
366 COG3640 CooC CO dehydrogenase 97.2 0.0018 3.9E-08 62.9 9.2 81 137-239 135-221 (255)
367 KOG0072 GTP-binding ADP-ribosy 97.2 0.0025 5.4E-08 56.8 9.3 105 135-252 61-177 (182)
368 PRK10867 signal recognition pa 97.2 0.0013 2.9E-08 70.9 9.2 74 136-220 184-263 (433)
369 PRK00771 signal recognition pa 97.2 0.0022 4.7E-08 69.4 10.7 73 137-220 177-255 (437)
370 PRK06995 flhF flagellar biosyn 97.2 0.00065 1.4E-08 74.0 6.5 23 35-57 257-279 (484)
371 KOG0461 Selenocysteine-specifi 97.1 0.0036 7.8E-08 63.6 10.9 87 136-239 70-174 (522)
372 PF05879 RHD3: Root hair defec 97.1 0.34 7.3E-06 56.4 28.7 23 40-63 1-23 (742)
373 KOG0393 Ras-related small GTPa 97.1 0.00069 1.5E-08 64.6 5.2 147 35-247 5-172 (198)
374 KOG1487 GTP-binding protein DR 97.1 0.00039 8.3E-09 67.9 3.4 32 33-65 58-89 (358)
375 COG1419 FlhF Flagellar GTP-bin 97.0 0.0013 2.8E-08 69.2 6.3 152 34-221 203-362 (407)
376 COG2895 CysN GTPases - Sulfate 97.0 0.0016 3.5E-08 66.5 6.6 174 33-243 5-192 (431)
377 TIGR00959 ffh signal recogniti 96.8 0.0029 6.2E-08 68.3 7.8 74 136-220 183-262 (428)
378 COG0541 Ffh Signal recognition 96.8 0.044 9.5E-07 58.1 15.6 72 136-219 183-261 (451)
379 PRK01889 GTPase RsgA; Reviewed 96.6 0.0028 6E-08 67.1 5.8 24 36-59 197-220 (356)
380 KOG0463 GTP-binding protein GP 96.5 0.0036 7.8E-08 64.1 5.5 25 34-58 133-157 (641)
381 cd01855 YqeH YqeH. YqeH is an 96.5 0.015 3.2E-07 55.8 9.2 118 161-283 23-149 (190)
382 PRK11537 putative GTP-binding 96.3 0.018 3.9E-07 59.9 9.4 25 33-57 3-27 (318)
383 KOG1534 Putative transcription 96.1 0.015 3.2E-07 55.5 6.6 21 36-56 5-25 (273)
384 KOG2203 GTP-binding protein [G 96.1 0.0046 9.9E-08 66.3 3.4 43 10-59 20-62 (772)
385 COG4988 CydD ABC-type transpor 96.0 0.03 6.4E-07 61.4 9.5 28 36-65 349-376 (559)
386 KOG4181 Uncharacterized conser 96.0 0.026 5.6E-07 57.6 8.3 26 33-58 187-212 (491)
387 KOG2423 Nucleolar GTPase [Gene 96.0 0.0078 1.7E-07 62.3 4.5 25 35-59 308-332 (572)
388 KOG0464 Elongation factor G [T 96.0 0.0041 8.9E-08 64.4 2.5 130 33-212 36-169 (753)
389 KOG0780 Signal recognition par 96.0 0.015 3.2E-07 60.4 6.4 76 136-219 184-262 (483)
390 KOG0467 Translation elongation 96.0 0.014 3E-07 65.1 6.7 124 33-209 8-136 (887)
391 COG3840 ThiQ ABC-type thiamine 95.8 0.0071 1.5E-07 56.6 3.2 29 35-64 26-54 (231)
392 COG1136 SalX ABC-type antimicr 95.7 0.0081 1.8E-07 58.8 3.4 25 36-61 33-57 (226)
393 COG5258 GTPBP1 GTPase [General 95.7 0.015 3.3E-07 60.1 5.1 63 138-213 203-271 (527)
394 cd01859 MJ1464 MJ1464. This f 95.6 0.03 6.5E-07 51.7 6.7 91 162-254 2-96 (156)
395 PF13555 AAA_29: P-loop contai 95.6 0.012 2.6E-07 45.3 3.1 22 35-56 24-45 (62)
396 cd00071 GMPK Guanosine monopho 95.5 0.013 2.8E-07 53.2 3.5 21 37-57 2-22 (137)
397 KOG0460 Mitochondrial translat 95.4 0.032 6.9E-07 57.0 6.4 126 36-213 56-186 (449)
398 PF00005 ABC_tran: ABC transpo 95.4 0.012 2.6E-07 53.0 2.9 23 36-58 13-35 (137)
399 COG1101 PhnK ABC-type uncharac 95.3 0.013 2.8E-07 56.4 3.0 28 35-63 33-60 (263)
400 cd01130 VirB11-like_ATPase Typ 95.2 0.014 3.1E-07 55.8 3.1 29 35-65 26-54 (186)
401 PF13521 AAA_28: AAA domain; P 95.1 0.011 2.5E-07 55.0 2.0 22 36-57 1-22 (163)
402 COG1116 TauB ABC-type nitrate/ 95.1 0.016 3.4E-07 57.2 2.9 27 36-63 31-57 (248)
403 COG4107 PhnK ABC-type phosphon 95.1 0.018 3.8E-07 53.4 3.0 29 36-66 34-62 (258)
404 KOG1533 Predicted GTPase [Gene 95.1 0.06 1.3E-06 52.3 6.7 20 37-56 5-24 (290)
405 PF03205 MobB: Molybdopterin g 95.0 0.017 3.8E-07 52.5 2.9 23 35-57 1-23 (140)
406 TIGR03263 guanyl_kin guanylate 95.0 0.022 4.8E-07 53.9 3.7 22 36-57 3-24 (180)
407 cd03225 ABC_cobalt_CbiO_domain 95.0 0.021 4.6E-07 55.7 3.6 28 36-65 29-56 (211)
408 COG0194 Gmk Guanylate kinase [ 95.0 0.018 3.9E-07 54.3 2.9 36 36-71 6-41 (191)
409 COG0523 Putative GTPases (G3E 95.0 0.17 3.8E-06 52.6 10.4 25 34-58 1-25 (323)
410 cd03261 ABC_Org_Solvent_Resist 94.9 0.021 4.5E-07 56.7 3.5 22 36-57 28-49 (235)
411 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.023 4.9E-07 52.0 3.4 23 36-58 28-50 (144)
412 cd03264 ABC_drug_resistance_li 94.9 0.021 4.7E-07 55.6 3.3 29 35-65 26-54 (211)
413 cd03222 ABC_RNaseL_inhibitor T 94.9 0.022 4.8E-07 54.0 3.3 24 35-58 26-49 (177)
414 PRK00300 gmk guanylate kinase; 94.9 0.022 4.8E-07 55.2 3.3 36 36-71 7-43 (205)
415 KOG2749 mRNA cleavage and poly 94.9 0.15 3.2E-06 52.7 9.1 39 33-77 102-140 (415)
416 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.8 0.023 5E-07 55.6 3.5 28 36-65 32-59 (218)
417 TIGR01360 aden_kin_iso1 adenyl 94.8 0.021 4.5E-07 54.3 2.9 26 33-58 2-30 (188)
418 TIGR01166 cbiO cobalt transpor 94.8 0.026 5.6E-07 54.1 3.5 23 36-58 20-42 (190)
419 COG0410 LivF ABC-type branched 94.7 0.026 5.5E-07 55.0 3.3 28 36-65 31-58 (237)
420 TIGR02475 CobW cobalamin biosy 94.7 0.36 7.9E-06 50.8 12.2 25 33-57 3-27 (341)
421 cd03224 ABC_TM1139_LivF_branch 94.7 0.027 5.8E-07 55.3 3.5 23 36-58 28-50 (222)
422 cd03226 ABC_cobalt_CbiO_domain 94.7 0.027 5.8E-07 54.7 3.5 28 36-65 28-55 (205)
423 TIGR00960 3a0501s02 Type II (G 94.7 0.027 5.9E-07 55.1 3.5 23 35-57 30-52 (216)
424 cd03263 ABC_subfamily_A The AB 94.7 0.026 5.7E-07 55.4 3.4 23 36-58 30-52 (220)
425 PRK13541 cytochrome c biogenes 94.7 0.028 6.1E-07 54.1 3.5 23 36-58 28-50 (195)
426 cd03215 ABC_Carb_Monos_II This 94.7 0.029 6.3E-07 53.4 3.6 24 35-58 27-50 (182)
427 cd03259 ABC_Carb_Solutes_like 94.7 0.028 6E-07 54.9 3.5 22 36-57 28-49 (213)
428 cd03265 ABC_DrrA DrrA is the A 94.7 0.028 6E-07 55.2 3.5 22 36-57 28-49 (220)
429 TIGR02673 FtsE cell division A 94.6 0.029 6.3E-07 54.8 3.6 23 36-58 30-52 (214)
430 cd03218 ABC_YhbG The ABC trans 94.6 0.029 6.3E-07 55.6 3.6 23 36-58 28-50 (232)
431 cd03258 ABC_MetN_methionine_tr 94.6 0.029 6.4E-07 55.6 3.6 28 36-65 33-60 (233)
432 PRK11629 lolD lipoprotein tran 94.6 0.027 5.8E-07 55.9 3.3 22 36-57 37-58 (233)
433 TIGR03499 FlhF flagellar biosy 94.6 0.033 7.2E-07 57.1 4.0 23 35-57 195-217 (282)
434 cd03292 ABC_FtsE_transporter F 94.6 0.029 6.4E-07 54.7 3.5 28 36-65 29-56 (214)
435 cd03229 ABC_Class3 This class 94.6 0.031 6.7E-07 53.0 3.5 28 36-65 28-55 (178)
436 PRK14737 gmk guanylate kinase; 94.6 0.035 7.5E-07 53.2 3.9 37 35-71 5-42 (186)
437 cd03269 ABC_putative_ATPase Th 94.6 0.03 6.6E-07 54.5 3.5 22 36-57 28-49 (210)
438 COG1120 FepC ABC-type cobalami 94.5 0.03 6.5E-07 56.0 3.4 28 36-65 30-57 (258)
439 PRK13651 cobalt transporter AT 94.5 0.03 6.4E-07 58.1 3.5 29 36-66 35-63 (305)
440 cd03266 ABC_NatA_sodium_export 94.5 0.031 6.8E-07 54.7 3.5 22 36-57 33-54 (218)
441 PRK13540 cytochrome c biogenes 94.5 0.033 7.1E-07 53.9 3.5 24 35-58 28-51 (200)
442 cd03262 ABC_HisP_GlnQ_permease 94.5 0.033 7.2E-07 54.3 3.6 28 36-65 28-55 (213)
443 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.031 6.8E-07 55.7 3.3 31 36-68 32-62 (254)
444 cd03236 ABC_RNaseL_inhibitor_d 94.5 0.033 7.1E-07 56.2 3.6 30 36-67 28-57 (255)
445 TIGR02315 ABC_phnC phosphonate 94.5 0.032 6.9E-07 55.7 3.5 22 36-57 30-51 (243)
446 PRK13695 putative NTPase; Prov 94.5 0.3 6.6E-06 46.0 10.0 22 36-57 2-23 (174)
447 cd03231 ABC_CcmA_heme_exporter 94.5 0.034 7.4E-07 53.9 3.6 29 35-65 27-55 (201)
448 COG4559 ABC-type hemin transpo 94.5 0.034 7.4E-07 53.4 3.4 27 36-63 29-55 (259)
449 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.033 7.1E-07 54.2 3.5 29 36-66 36-64 (207)
450 PRK15177 Vi polysaccharide exp 94.4 0.033 7.2E-07 54.5 3.4 30 36-67 15-44 (213)
451 TIGR03608 L_ocin_972_ABC putat 94.4 0.035 7.5E-07 53.9 3.5 23 36-58 26-48 (206)
452 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.034 7.4E-07 54.6 3.5 23 36-58 32-54 (220)
453 cd03256 ABC_PhnC_transporter A 94.4 0.034 7.4E-07 55.4 3.5 22 36-57 29-50 (241)
454 TIGR03596 GTPase_YlqF ribosome 94.4 0.075 1.6E-06 54.3 6.1 87 163-253 12-102 (276)
455 TIGR00157 ribosome small subun 94.4 0.024 5.2E-07 56.8 2.4 88 161-249 25-118 (245)
456 cd03216 ABC_Carb_Monos_I This 94.4 0.038 8.2E-07 51.7 3.5 24 35-58 27-50 (163)
457 cd03219 ABC_Mj1267_LivG_branch 94.4 0.034 7.4E-07 55.2 3.5 28 36-65 28-55 (236)
458 PRK13543 cytochrome c biogenes 94.4 0.035 7.6E-07 54.3 3.5 28 36-65 39-66 (214)
459 cd03268 ABC_BcrA_bacitracin_re 94.4 0.033 7.2E-07 54.1 3.3 28 36-65 28-55 (208)
460 cd03254 ABCC_Glucan_exporter_l 94.4 0.036 7.7E-07 54.8 3.5 28 36-65 31-58 (229)
461 PRK13851 type IV secretion sys 94.3 0.032 6.9E-07 58.6 3.2 33 34-68 162-194 (344)
462 cd01858 NGP_1 NGP-1. Autoanti 94.3 0.078 1.7E-06 49.1 5.5 47 167-213 3-55 (157)
463 cd03257 ABC_NikE_OppD_transpor 94.3 0.038 8.3E-07 54.4 3.6 28 36-65 33-60 (228)
464 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.037 8E-07 55.1 3.4 28 36-65 31-58 (238)
465 cd03235 ABC_Metallic_Cations A 94.3 0.039 8.4E-07 53.9 3.5 23 36-58 27-49 (213)
466 PRK14250 phosphate ABC transpo 94.3 0.039 8.4E-07 55.1 3.6 29 36-66 31-59 (241)
467 TIGR02211 LolD_lipo_ex lipopro 94.3 0.039 8.6E-07 54.1 3.6 23 36-58 33-55 (221)
468 PRK13539 cytochrome c biogenes 94.2 0.04 8.7E-07 53.6 3.6 23 36-58 30-52 (207)
469 PRK10895 lipopolysaccharide AB 94.2 0.04 8.6E-07 54.9 3.6 22 36-57 31-52 (241)
470 PRK11124 artP arginine transpo 94.2 0.039 8.6E-07 55.0 3.5 24 35-58 29-52 (242)
471 TIGR03410 urea_trans_UrtE urea 94.2 0.041 8.8E-07 54.4 3.6 23 36-58 28-50 (230)
472 cd03223 ABCD_peroxisomal_ALDP 94.2 0.043 9.4E-07 51.4 3.6 22 36-57 29-50 (166)
473 cd03301 ABC_MalK_N The N-termi 94.2 0.041 8.8E-07 53.7 3.5 22 36-57 28-49 (213)
474 COG0411 LivG ABC-type branched 94.2 0.014 3E-07 57.3 0.1 22 36-57 32-53 (250)
475 PF13207 AAA_17: AAA domain; P 94.2 0.037 8E-07 48.5 2.9 22 36-57 1-22 (121)
476 cd03230 ABC_DR_subfamily_A Thi 94.2 0.043 9.4E-07 51.7 3.5 23 36-58 28-50 (173)
477 PRK10908 cell division protein 94.2 0.041 8.8E-07 54.1 3.5 29 35-65 29-57 (222)
478 cd02038 FleN-like FleN is a me 94.2 0.07 1.5E-06 48.4 4.8 60 136-210 45-110 (139)
479 cd03253 ABCC_ATM1_transporter 94.2 0.04 8.8E-07 54.7 3.5 28 36-65 29-56 (236)
480 cd03297 ABC_ModC_molybdenum_tr 94.2 0.042 9.2E-07 53.7 3.5 24 35-58 24-47 (214)
481 PRK11248 tauB taurine transpor 94.1 0.042 9.2E-07 55.4 3.6 23 36-58 29-51 (255)
482 TIGR03864 PQQ_ABC_ATP ABC tran 94.1 0.042 9.1E-07 54.6 3.5 23 36-58 29-51 (236)
483 PRK10584 putative ABC transpor 94.1 0.04 8.7E-07 54.4 3.3 23 36-58 38-60 (228)
484 cd03246 ABCC_Protease_Secretio 94.1 0.044 9.6E-07 51.7 3.4 23 36-58 30-52 (173)
485 PRK13538 cytochrome c biogenes 94.1 0.045 9.7E-07 53.1 3.6 24 35-58 28-51 (204)
486 cd03298 ABC_ThiQ_thiamine_tran 94.1 0.045 9.7E-07 53.4 3.5 28 36-65 26-53 (211)
487 cd02019 NK Nucleoside/nucleoti 94.1 0.043 9.4E-07 43.3 2.8 21 37-57 2-22 (69)
488 PF02263 GBP: Guanylate-bindin 94.1 0.049 1.1E-06 55.1 3.9 24 34-57 21-44 (260)
489 PRK13641 cbiO cobalt transport 94.1 0.043 9.2E-07 56.4 3.5 28 36-65 35-62 (287)
490 TIGR02323 CP_lyasePhnK phospho 94.1 0.044 9.5E-07 55.1 3.6 28 36-65 31-58 (253)
491 cd03294 ABC_Pro_Gly_Bertaine T 94.1 0.044 9.5E-07 55.7 3.5 22 36-57 52-73 (269)
492 PRK15112 antimicrobial peptide 94.1 0.044 9.6E-07 55.6 3.5 28 36-65 41-68 (267)
493 cd00267 ABC_ATPase ABC (ATP-bi 94.1 0.048 1.1E-06 50.4 3.5 30 35-66 26-55 (157)
494 TIGR02324 CP_lyasePhnL phospho 94.1 0.046 1E-06 53.8 3.6 22 36-57 36-57 (224)
495 COG1126 GlnQ ABC-type polar am 94.1 0.043 9.2E-07 53.0 3.1 24 36-59 30-53 (240)
496 cd03228 ABCC_MRP_Like The MRP 94.0 0.048 1E-06 51.3 3.5 23 36-58 30-52 (171)
497 cd03214 ABC_Iron-Siderophores_ 94.0 0.049 1.1E-06 51.8 3.6 22 36-57 27-48 (180)
498 COG3523 IcmF Type VI protein s 94.0 0.23 4.9E-06 59.7 9.7 27 32-59 123-149 (1188)
499 cd03251 ABCC_MsbA MsbA is an e 94.0 0.045 9.7E-07 54.3 3.5 23 36-58 30-52 (234)
500 cd03295 ABC_OpuCA_Osmoprotecti 94.0 0.047 1E-06 54.5 3.6 28 36-65 29-56 (242)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=3.5e-93 Score=786.46 Aligned_cols=591 Identities=41% Similarity=0.593 Sum_probs=539.7
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
|+.+++++|++||+|+.+|.. .++.+|+|+|||+||+||||++|+++|.+|||||+|+|||+|.+++|.+..
T Consensus 4 ~~~li~~vn~lqd~~~~l~~~--------~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~ 75 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGSS--------SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVA 75 (657)
T ss_pred hhhccccchHHHHHHHHhcCC--------CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeeccccc
Confidence 789999999999999999932 246899999999999999999999999999999999999999999999998
Q ss_pred CCCcceeeec-cCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHH
Q 007422 81 EGSREYAEFL-HIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV 159 (604)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~ 159 (604)
.+..+|++|. |.+...++||.+++++|..+++++.|.++++|+.+|.+.+++++++++|+||+||++++++++||+++.
T Consensus 76 ~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~ 155 (657)
T KOG0446|consen 76 GGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIE 155 (657)
T ss_pred CCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHH
Confidence 8889999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEE
Q 007422 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIG 233 (604)
Q Consensus 160 ~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 233 (604)
.++++|++.|+..++++|++|+++|.|+++++++++++ .|||+|+||+|++++|++..+++.|..++++.||++
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~ 235 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVG 235 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceee
Confidence 99999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHh
Q 007422 234 VVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSR 313 (604)
Q Consensus 234 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~ 313 (604)
|.||++++++...+..++...|..||.+||.|..+.+++|+++|+..|...|..||++++|.++..|+..+.+.++|+.+
T Consensus 236 vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~ 315 (657)
T KOG0446|consen 236 VVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNR 315 (657)
T ss_pred eeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHHHHHHhhcCC---C-----CCCchhHhHHhhhHHHHHhcccccccCchHHHHHHHH
Q 007422 314 LGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGV---R-----PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLIT 385 (604)
Q Consensus 314 lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~---~-----~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~v~~~i~ 385 (604)
+|. .....+....++.+++.|+..+...+.|. + .||+++++.|++.|...+.++++.+.+...+|++++.
T Consensus 316 ~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~ 393 (657)
T KOG0446|consen 316 IGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVS 393 (657)
T ss_pred hcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHH
Confidence 996 22222333457777788888887888776 2 5889999999999999999999999999999999999
Q ss_pred HhccCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHH
Q 007422 386 EADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDT 465 (604)
Q Consensus 386 ~~~g~~p~~f~pe~~f~~li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~~~~~l~~~~~~ 465 (604)
|++|++|++|.|+.+|+.++++||+.+++|+++||+.|++++.+++++++..+ ++.|||.|+.++..++.+.+.+++++
T Consensus 394 ~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~~~~ 472 (657)
T KOG0446|consen 394 EASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEGLDE 472 (657)
T ss_pred hccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999998753 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccccc---cccccCccc---cc----------------cCCCCCCCC--------------------
Q 007422 466 SKKATLQLVDMECSYLTV---DFFRKLPQD---VD----------------KGGNPTHSI-------------------- 503 (604)
Q Consensus 466 a~~~i~~li~~E~~y~~~---~~~~~~~~~---~~----------------~~~~~~~~~-------------------- 503 (604)
++++|.++|+||.+|+|| ||++...+. .. ..+.+....
T Consensus 473 t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (657)
T KOG0446|consen 473 TKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIVL 552 (657)
T ss_pred HHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchhh
Confidence 999999999999999988 455432101 11 000000000
Q ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhhCCChHHH
Q 007422 504 -----FDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGK-LEQKRLSNLLNEDPAVM 577 (604)
Q Consensus 504 -----~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~-~~~~~~~~lL~E~~~i~ 577 (604)
.......+.+.|..++.+||+||+++++|+|||+|+|+||+.+++.|+.+|++.||. ++ .+++||.|+|.++
T Consensus 553 ~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~--~~~~ll~E~~~i~ 630 (657)
T KOG0446|consen 553 SRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDE--QLESLLKEDPRIK 630 (657)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHccCHHHH
Confidence 011112256788999999999999999999999999999999999999999999999 54 5999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCC
Q 007422 578 ERRSALAKRLELYRSAQSEIDAVAWSK 604 (604)
Q Consensus 578 ~kR~~l~~~l~~L~~A~~~l~~~~~~~ 604 (604)
.+|+.+++|+++|++|+.++..+.|++
T Consensus 631 ~~R~~~~~~l~~L~~a~~ii~~~~~~~ 657 (657)
T KOG0446|consen 631 RRRELQQKRLLALQKALSILATVAQAK 657 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998874
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=6.2e-46 Score=382.04 Aligned_cols=265 Identities=33% Similarity=0.548 Sum_probs=241.1
Q ss_pred HHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHH
Q 007422 217 ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGI 296 (604)
Q Consensus 217 ~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l 296 (604)
.+++.|+.++|++||++|+|||++|+++..++.++...|..||.+||+|+..++++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhHHHHHHHHHHHHHHHHHhhcCCCC---------CCchhHhHHhhhHHHHHh
Q 007422 297 QSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRP---------GGDKIYYVFDNQLPAALK 367 (604)
Q Consensus 297 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------~~~~i~~~f~~~~~~~~~ 367 (604)
+.+|+..+.+++.+|..||++++.+.+++..+|++++++|++.+.++++|.+. ||++|.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999777788889999999999999999999986 479999999999999999
Q ss_pred cccccccCchHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Q 007422 368 RLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPAL 447 (604)
Q Consensus 368 ~~~~~~~~~~~~v~~~i~~~~g~~p~~f~pe~~f~~li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L 447 (604)
+.++...+++++|+++|++++|+++++|+|+.+|+.||+++|++|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999886 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 007422 448 RAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTV 483 (604)
Q Consensus 448 ~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~y~~~ 483 (604)
++++.+++.++++++.++|+++|+++|+||++|+||
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T 275 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINT 275 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999998
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=8e-43 Score=343.37 Aligned_cols=233 Identities=64% Similarity=0.969 Sum_probs=215.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
||.|++++|+++++++.+|... ++++|+|+|||++|+||||++|+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~--------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~- 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS- 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC-
Confidence 8999999999999999999531 2589999999999999999999999999899999999999999999874
Q ss_pred CCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHH
Q 007422 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~ 160 (604)
.++|+.+.+.+++.+.+++++...|..+++...|.+++||+++|.+++++|++++++||||||+...+..+++.++..
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~ 149 (240)
T smart00053 72 --STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE 149 (240)
T ss_pred --CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH
Confidence 357888888888899999999999999999999989999999999999999999999999999987776677777889
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
.+++++..|+++++.|||+|++++.|+.+++.+++++ .|+++|+||+|.+++++++.++++|+.+++++|||+|
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v 229 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGV 229 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEE
Confidence 9999999999999989999999999999998877776 7999999999999999889999999999999999999
Q ss_pred EeCChhhhhc
Q 007422 235 VNRSQADINK 244 (604)
Q Consensus 235 ~~~s~~~i~~ 244 (604)
+||+++|++.
T Consensus 230 ~nr~~~d~~~ 239 (240)
T smart00053 230 VNRSQKDIEG 239 (240)
T ss_pred ECCChHHhhc
Confidence 9999998864
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=244.01 Aligned_cols=264 Identities=29% Similarity=0.460 Sum_probs=210.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCC----CCccCChHHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIP----RKRFTDFAAVRKE 106 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~ 106 (604)
.+||+|||||+|||||+|+|+.+....++|+|+| ..||.|..+.|...|.- .+.|.... -.+..|+.+++.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH---VAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH---VALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch---hhhhccccccccccchhHHHHHHHH
Confidence 5899999999999999999999999999999999 68999999998665432 12222211 1344688899999
Q ss_pred HHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc
Q 007422 107 IQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (604)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d 186 (604)
++-.+......++.+|+.+|.+.+.+|+.+.++|||+||++...+.+-..+..+.+-.|.+.||+++++||||+.+...|
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 88877766667899999999999999999999999999999988877777788889999999999999999999998888
Q ss_pred chhhHHHHhhh------cceeEEEecccCCCCCC----CHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 187 LATSDAIKISR------ERTFGVLTKIDLMDKGT----DAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 187 ~~~~~~l~l~~------~r~i~VltK~D~~~~~~----~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
...+..-.+.. .|||+|+||+|+..+.- ....+++|+..|++ +|||+|+.-.+. ..-++.+-+..|
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn---ssdSIdaIR~YE 539 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN---SSESIEAIREYE 539 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC---cchhHHHHHHHH
Confidence 87776555543 99999999999986532 35788999988886 899998754332 112344456789
Q ss_pred HHHhccCCCCchh---hhccChHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 007422 256 REYFSTTPEYKHL---AQRMGSEHLAKMLSKHLETVIKSRIPGIQSLIS 301 (604)
Q Consensus 256 ~~ff~~~~~~~~~---~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~ 301 (604)
++||.++..++.- +..+.+.+|.=.++.-++..+++++..--....
T Consensus 540 E~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFk 588 (980)
T KOG0447|consen 540 EEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFK 588 (980)
T ss_pred HHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987655442 367888899888898888888877755444433
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.90 E-value=1.3e-23 Score=176.38 Aligned_cols=89 Identities=42% Similarity=0.590 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhCCChHHHHHHHHHHHHHHH
Q 007422 510 SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLEL 589 (604)
Q Consensus 510 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~lL~E~~~i~~kR~~l~~~l~~ 589 (604)
..+++|+.++.|||+||+|+++|+|||+|+||||+.+++.||.+|++.||+++. +++||+|||+|++||+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~--~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEEL--LDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCccc--HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999864 999999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 007422 590 YRSAQSEIDAV 600 (604)
Q Consensus 590 L~~A~~~l~~~ 600 (604)
|++|+++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=4.1e-25 Score=217.74 Aligned_cols=233 Identities=16% Similarity=0.263 Sum_probs=178.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|++||.||+|||||+|+|+|.++ .++|+.|.++| +
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~QTTR------------------------------------~ 43 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR------------------------------------N 43 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcchhh------------------------------------h
Confidence 456899999999999999999999999 88888887766 3
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-CcchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~-~d~~~~~ 191 (604)
.+.| |...+..+++||||||+..... .+.+.+...+.+.+..+|+|+|+|.+.. ......-
T Consensus 44 ~I~G-------------I~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~ 105 (298)
T COG1159 44 RIRG-------------IVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF 105 (298)
T ss_pred heeE-------------EEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH
Confidence 4555 5555667999999999988633 3788888899999999999988775443 1222222
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCc--cccCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCc
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKS--YRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYK 266 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~ 266 (604)
.+... +.|.++++||+|...+...+..+..... .+. ...+.+++..+.+++.+...+....+|.+|++..+..+
T Consensus 106 il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f-~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 106 ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF-KEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc-ceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhcc
Confidence 23333 3699999999999988764334333221 111 25677778788999999999999999999999877777
Q ss_pred hhhhccChHHHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHHH
Q 007422 267 HLAQRMGSEHLA-KMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTI 329 (604)
Q Consensus 267 ~~~~~~g~~~L~-~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l 329 (604)
+ ....++. +.++|.++..++++||+......+++.+.++.+..+...+.+++++|+.++
T Consensus 185 D----~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~Ii 244 (298)
T COG1159 185 D----RPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGII 244 (298)
T ss_pred C----ChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccceE
Confidence 6 4455554 999999999999999999988777777666777788888888888876543
No 7
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.86 E-value=1.5e-21 Score=164.39 Aligned_cols=89 Identities=30% Similarity=0.469 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhCCChHHHHHHHHHHHHHHH
Q 007422 510 SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLEL 589 (604)
Q Consensus 510 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~lL~E~~~i~~kR~~l~~~l~~ 589 (604)
..+++|++++.|||+||+|||+|+|||+|+||||+.+.+.|+.+|+..|+.++. +.+||+|||+|+++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999998875 899999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 007422 590 YRSAQSEIDAV 600 (604)
Q Consensus 590 L~~A~~~l~~~ 600 (604)
|++|+++|++|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 8
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.86 E-value=4.6e-21 Score=180.81 Aligned_cols=161 Identities=36% Similarity=0.508 Sum_probs=123.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceee-eccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAE-FLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
|+|+|.+|||||||||+|+|.+++|.+.++||++|+.+.+...+.....+.. ..........++..+...+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999999999999999999999999876654322211 111225667788999988888777777
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHh
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l 195 (604)
+....++...+.+....+...+++||||||+....... .+++.+|+..+|++|+|+ +++..+...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~vi~V~-~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADVVIFVV-DANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEEEEEEE-ETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCEEEEEe-ccCcccchHHHHHH
Confidence 66777888888888999999999999999997743321 388999999999887765 66666666655444
Q ss_pred hh------cceeEEEecc
Q 007422 196 SR------ERTFGVLTKI 207 (604)
Q Consensus 196 ~~------~r~i~VltK~ 207 (604)
.+ .++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 43 8899999995
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=6.9e-20 Score=186.44 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=150.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.|+|+|.+|||||||+|+|+|.++-.++.- .+||.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~----------------------------------------- 40 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS----------------------------------------- 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-----------------------------------------
Confidence 689999999999999999999986222211 13332210
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~ 194 (604)
| +...+..++.|+||||+.... ......+...+..++..+|++++++++.+........+.
T Consensus 41 -~-------------i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~ 101 (270)
T TIGR00436 41 -G-------------IHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLT 101 (270)
T ss_pred -E-------------EEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHH
Confidence 1 122223368999999997642 124445555677889999999998866543322222232
Q ss_pred h---hhcceeEEEecccCCCCCCCHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhh
Q 007422 195 I---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQ 270 (604)
Q Consensus 195 l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~ 270 (604)
. ...|+++|+||+|+.++.. ..+.+........ ..++.+++.++.+++++...+....++.+|++..+..++
T Consensus 102 ~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~--- 177 (270)
T TIGR00436 102 KLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD--- 177 (270)
T ss_pred HHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC---
Confidence 2 2389999999999975332 2211111100111 268999999999999999988888888888776665555
Q ss_pred ccChHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHH
Q 007422 271 RMGSEHL-AKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYT 328 (604)
Q Consensus 271 ~~g~~~L-~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~ 328 (604)
.+...+ .+.+++.++.++++++|+......+.+.+.+.....+...+.+++++++.+
T Consensus 178 -~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~i 235 (270)
T TIGR00436 178 -QPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKI 235 (270)
T ss_pred -CCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeE
Confidence 344444 589999999999999999988877776553322334555566676666544
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=1.9e-18 Score=178.08 Aligned_cols=231 Identities=18% Similarity=0.259 Sum_probs=150.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|+|+|.+|||||||+|+|+|.++. +++..|.+.+ .
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-----~vs~~~~tt~------------------------------------~ 42 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-----IVSPKPQTTR------------------------------------H 42 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee-----ecCCCCCccc------------------------------------c
Confidence 4567999999999999999999999873 3333331111 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
...| +...+..+++|+||||+..... .....+...+..++..+|+++++++..+. ......
T Consensus 43 ~i~~-------------i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~ 104 (292)
T PRK00089 43 RIRG-------------IVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF 104 (292)
T ss_pred cEEE-------------EEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH
Confidence 0111 2222234799999999976432 14445566677888999999998766541 112222
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccc-cCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCch
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKH 267 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~ 267 (604)
.+... +.|+++|+||+|+..........+...... ....++.+++.++.+++++...+....++.++++.....++
T Consensus 105 i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td 184 (292)
T PRK00089 105 ILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITD 184 (292)
T ss_pred HHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 23333 269999999999984332222222211111 12457889999999999998888887777777766554544
Q ss_pred hhhccChHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHH
Q 007422 268 LAQRMGSEHL-AKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYT 328 (604)
Q Consensus 268 ~~~~~g~~~L-~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~ 328 (604)
.....+ .+.+++.++.++++++|+......+.+.+. ....+...+.+++++++.+
T Consensus 185 ----~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k~i 240 (292)
T PRK00089 185 ----RPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQKGI 240 (292)
T ss_pred ----CCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCceeE
Confidence 344444 588999999999999999987776666542 3344566666777666543
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1e-17 Score=175.50 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=151.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
..|++||.+|+|||||+|+|+|..+- +++..|.+.+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~-----ivs~k~~tTr--------------------------------------- 88 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLS-----IVTPKVQTTR--------------------------------------- 88 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCcee-----eccCCCCCcc---------------------------------------
Confidence 38999999999999999999998862 2222221100
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~~ 192 (604)
. .+.-.+.. +..++.||||||+..... .+...+...+..++..+|++++++++... +.. ..+
T Consensus 89 -----~----~~~~~~~~-~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~~~s-~~~~~~~i 152 (339)
T PRK15494 89 -----S----IITGIITL-KDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDSLKS-FDDITHNI 152 (339)
T ss_pred -----C----cEEEEEEe-CCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEECCCC-CCHHHHHH
Confidence 0 00000111 223789999999964321 13444444555678899999998765432 222 223
Q ss_pred HHhhh---cceeEEEecccCCCCCCCHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchh
Q 007422 193 IKISR---ERTFGVLTKIDLMDKGTDAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHL 268 (604)
Q Consensus 193 l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~ 268 (604)
+...+ .+.++|+||+|+.+.. ..++.... .......++.+++.++.++++++..+....+|.+|++..+.+++
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~--~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td- 229 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKY--LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD- 229 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCcccc--HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC-
Confidence 33332 6788999999986531 22221110 11112458999999999999999999999999999998877776
Q ss_pred hhccChHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHH
Q 007422 269 AQRMGSEHL-AKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYT 328 (604)
Q Consensus 269 ~~~~g~~~L-~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~ 328 (604)
....++ .+.+++.++.++++++|+......+.+.+.+.....+...+.+++++++.+
T Consensus 230 ---~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~i 287 (339)
T PRK15494 230 ---LPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTI 287 (339)
T ss_pred ---CCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeE
Confidence 455555 499999999999999999998887777654333344666677777776554
No 12
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=7.4e-14 Score=151.18 Aligned_cols=211 Identities=16% Similarity=0.216 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcce---eeecc-----CC-------C---
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREY---AEFLH-----IP-------R--- 94 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~---~~~~~-----~~-------~--- 94 (604)
.-|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.+++........-+ ..|.. .| .
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 349999999999999999999999999999999999999977754322211101 00000 00 0
Q ss_pred ----CccCChHHHHHHHHHhh----------------------hhhc---CCCC------cccC-ccEEEEEecCC----
Q 007422 95 ----KRFTDFAAVRKEIQDET----------------------DRET---GRTK------QISS-VPIHLSIYSPN---- 134 (604)
Q Consensus 95 ----~~~~~~~~v~~~i~~~~----------------------~~~~---g~~~------~~s~-~~i~l~i~~~~---- 134 (604)
....|...+...+.+.. .+.+ +..- .|.. -.|.++.....
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 00011111111111110 0000 0000 1110 12334443333
Q ss_pred -CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh-----cceeEEEecc
Q 007422 135 -VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR-----ERTFGVLTKI 207 (604)
Q Consensus 135 -~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~-----~r~i~VltK~ 207 (604)
..+++||||||+..... ..+..++...+..+|+|+++++.... .......++..+ .|+++|+||+
T Consensus 228 ~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred ccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 35899999999986421 11333444579999999888765431 222333333333 2999999999
Q ss_pred cCCCCCCCH----HHHHhCC--cccc-CCCEEEEEeCChhhhhccccHHHH
Q 007422 208 DLMDKGTDA----ADILEGK--SYRL-KFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 208 D~~~~~~~~----~~~l~~~--~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
|..++.++. ...+... .... ....++|++..+.+++.+.+.+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 997644322 2222111 0111 235788999999888887776655
No 13
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=1e-17 Score=164.15 Aligned_cols=215 Identities=14% Similarity=0.207 Sum_probs=142.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..-+|+|||.||+|||||.|.++|.++.|++ |.+.+++ .
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS-----~K~~TTr------------------------------------~ 109 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS-----RKVHTTR------------------------------------H 109 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcccccc-----cccccee------------------------------------e
Confidence 3458999999999999999999999995554 4443333 1
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
++.| +...+..+++|+||||+.......+...... +..-.+..+..+|+++++++..+.. .....
T Consensus 110 ~ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s-~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 110 RILG-------------IITSGETQLVFYDTPGLVSKKMHRRHHLMMS-VLQNPRDAAQNADCVVVVVDASATRTPLHPR 175 (379)
T ss_pred eeeE-------------EEecCceEEEEecCCcccccchhhhHHHHHH-hhhCHHHHHhhCCEEEEEEeccCCcCccChH
Confidence 1223 5556667999999999987544322221111 2223456788999998888776432 22222
Q ss_pred HHHhhh----cceeEEEecccCCCCCCCHH---HHHhCC--------------------ccccCCCE------EEEEeCC
Q 007422 192 AIKISR----ERTFGVLTKIDLMDKGTDAA---DILEGK--------------------SYRLKFPW------IGVVNRS 238 (604)
Q Consensus 192 ~l~l~~----~r~i~VltK~D~~~~~~~~~---~~l~~~--------------------~~~l~~g~------~~v~~~s 238 (604)
.|...+ .|.|+|+||+|...+...+. +.+.+. .++-..|| |.|++.+
T Consensus 176 vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~ 255 (379)
T KOG1423|consen 176 VLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALY 255 (379)
T ss_pred HHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccc
Confidence 333333 89999999999887654321 122111 11222355 8899999
Q ss_pred hhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007422 239 QADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVL 305 (604)
Q Consensus 239 ~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~ 305 (604)
+.|++++..++-..++.++|.+....-++ ........+.+++.|++|+.+++||-.+.-...++
T Consensus 256 G~GikdlkqyLmsqa~~gpW~y~a~i~T~---~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~ 319 (379)
T KOG1423|consen 256 GEGIKDLKQYLMSQAPPGPWKYPADIVTE---ESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWK 319 (379)
T ss_pred ccCHHHHHHHHHhcCCCCCCCCCcccccc---cCHHHHHHHHHHHHHHhhCccccCcceEEEEEEee
Confidence 99999999999888888888776544433 23333445999999999999999996654433333
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.65 E-value=9.5e-17 Score=147.72 Aligned_cols=146 Identities=27% Similarity=0.344 Sum_probs=88.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
+|++||.||+|||||+|+|+|.+. .+++- .+|.-+..-.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~--------------------------------------- 41 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGI--------------------------------------- 41 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEE---------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEE---------------------------------------
Confidence 699999999999999999999984 33221 1222211111
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchhhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~~~~ 192 (604)
+.. +...+.||||||+.+..... .. +.++..|+ .++|++|+++++.+.+....-.
T Consensus 42 ---------------~~~-~~~~~~lvDlPG~ysl~~~s----~e---e~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~ 98 (156)
T PF02421_consen 42 ---------------FKL-GDQQVELVDLPGIYSLSSKS----EE---ERVARDYLLSEKPDLIIVVVDATNLERNLYLT 98 (156)
T ss_dssp ---------------EEE-TTEEEEEEE----SSSSSSS----HH---HHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHH
T ss_pred ---------------EEe-cCceEEEEECCCcccCCCCC----cH---HHHHHHHHhhcCCCEEEEECCCCCHHHHHHHH
Confidence 111 12478999999998754321 22 45566776 5899998888765532221111
Q ss_pred HHh--hhcceeEEEecccCCCCCCCH--HHHHhCCccccCCCEEEEEeCChhhhhcccc
Q 007422 193 IKI--SRERTFGVLTKIDLMDKGTDA--ADILEGKSYRLKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 193 l~l--~~~r~i~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 247 (604)
.++ ...|+++|+||+|...+.... .+.+ ...++.+.+.++++++++++++..
T Consensus 99 ~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~L---s~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 99 LQLLELGIPVVVVLNKMDEAERKGIEIDAEKL---SERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HHHHHTTSSEEEEEETHHHHHHTTEEE-HHHH---HHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred HHHHHcCCCEEEEEeCHHHHHHcCCEECHHHH---HHHhCCCEEEEEeCCCcCHHHHHh
Confidence 222 229999999999998755421 1122 224567899999999998877654
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=1.7e-15 Score=158.02 Aligned_cols=156 Identities=24% Similarity=0.339 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
|.|++||.||+|||||+|+|+|.+. .++...|-+++ ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR------------------------------------Dr~ 42 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR------------------------------------DRI 42 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc------------------------------------CCc
Confidence 8999999999999999999999986 33333332222 122
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC----Ccchhh
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN----QDLATS 190 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~----~d~~~~ 190 (604)
.+ .....+. .+.+|||+|+.... +..+..++...+...+..+|+|||+|+.-. .|..-.
T Consensus 43 y~------------~~~~~~~-~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia 105 (444)
T COG1160 43 YG------------DAEWLGR-EFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVVDGREGITPADEEIA 105 (444)
T ss_pred cc------------eeEEcCc-eEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 22 1222222 48999999998643 234888999999999999999999875432 122223
Q ss_pred HHHHhhhcceeEEEecccCCCCCCCHHHHHhCCccccCCC-EEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
..|+...+|+|+|+||+|.........++ +.++.| .+++++-.+.+++++.+.+....
T Consensus 106 ~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 106 KILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred HHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 34443339999999999987443333333 455555 67788888888888887766554
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2e-14 Score=150.34 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
.+--.+|++|.||+|||||||+|+|.+. .++|..|-++|
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~GTTR------------------------------------ 253 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAGTTR------------------------------------ 253 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCCCcc------------------------------------
Confidence 3566899999999999999999999987 77887772222
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~ 190 (604)
.+ ++..+.-. ...+.|+||.|+...... ++..--+-.+..++++|.|+++++.... +-...
T Consensus 254 --------Dv----iee~i~i~-G~pv~l~DTAGiRet~d~-----VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~ 315 (454)
T COG0486 254 --------DV----IEEDINLN-GIPVRLVDTAGIRETDDV-----VERIGIERAKKAIEEADLVLFVLDASQPLDKEDL 315 (454)
T ss_pred --------ce----EEEEEEEC-CEEEEEEecCCcccCccH-----HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH
Confidence 22 22222111 237899999999864221 3333345567889999999887755442 22333
Q ss_pred HHHHhhh--cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKISR--ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~~--~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..+.... +++++|+||.|+..+..... . ....+..++.+++.++++++.+...+..
T Consensus 316 ~~~~~~~~~~~~i~v~NK~DL~~~~~~~~-~----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 316 ALIELLPKKKPIIVVLNKADLVSKIELES-E----KLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred HHHHhcccCCCEEEEEechhcccccccch-h----hccCCCceEEEEecCccCHHHHHHHHHH
Confidence 3333222 89999999999987654111 0 2233446899999999988877665544
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=2.3e-14 Score=152.20 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=109.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+..|++||.+|||||||+|+|++.+.-......+|+.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 448999999999999999999998742222234666664333
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---Ccchh-
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QDLAT- 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~---~d~~~- 189 (604)
+...+...++|+||||+......+ ..+......+++.+++++++++... .+...
T Consensus 201 ----------------v~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~ 258 (390)
T PRK12298 201 ----------------VRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVEN 258 (390)
T ss_pred ----------------EEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEeccCcccccChHHH
Confidence 111222258999999998644321 1122223457899999999886542 22111
Q ss_pred -hHHH---Hh-----hhcceeEEEecccCCCCCCCHHHHHhCC--ccccCCCEEEEEeCChhhhhccccHHHHHHHHHHH
Q 007422 190 -SDAI---KI-----SRERTFGVLTKIDLMDKGTDAADILEGK--SYRLKFPWIGVVNRSQADINKNVDMIAARRREREY 258 (604)
Q Consensus 190 -~~~l---~l-----~~~r~i~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~f 258 (604)
..++ .. ...|.++|+||+|+.++.. ..+.+... .......++.+++.+..+++++...+.....+.++
T Consensus 259 ~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 259 ARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred HHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 1111 11 1278999999999875432 22222211 11112357889999999999999888888888777
Q ss_pred hccCCCCch
Q 007422 259 FSTTPEYKH 267 (604)
Q Consensus 259 f~~~~~~~~ 267 (604)
++....+++
T Consensus 338 ~~~~~~~td 346 (390)
T PRK12298 338 EEAEEAEAP 346 (390)
T ss_pred cCCcccccC
Confidence 766655554
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=3.5e-14 Score=149.12 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|+|++||.+|+|||||+|+|+|.++...+...+|+-|++-.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------- 230 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------- 230 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE-------------------------------------
Confidence 6799999999999999999999998864444445666654322
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~-- 190 (604)
+.-++...+.|+||||+.+. -|.+..+.++. +..++.++|++++|++..+.+....
T Consensus 231 -----------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~ 288 (351)
T TIGR03156 231 -----------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIE 288 (351)
T ss_pred -----------------EEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHH
Confidence 22222347899999999542 12334455544 3457899999999887655432211
Q ss_pred ---HHHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 191 ---DAIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ---~~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+... ..|+++|+||+|+.+.. ..... .. ....++.+++.++.+++++...+
T Consensus 289 ~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~~-~~----~~~~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 289 AVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIERL-EE----GYPEAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred HHHHHHHHhccCCCCEEEEEEeecCCChH-hHHHH-Hh----CCCCEEEEEccCCCCHHHHHHHH
Confidence 223322 27899999999997532 12111 11 01247889999988887766544
No 19
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.57 E-value=2.3e-14 Score=138.88 Aligned_cols=169 Identities=18% Similarity=0.271 Sum_probs=102.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+|++||.+|+|||||+|+|+|.+.+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 3343331111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l 193 (604)
..+ +...+++|||||+.+... ....+...+...+.....++|++|+++............+
T Consensus 44 --------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l 104 (196)
T cd01852 44 --------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAV 104 (196)
T ss_pred --------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHH
Confidence 001 123689999999987542 1223444444444455677898887764333111122233
Q ss_pred Hhhh--------cceeEEEecccCCCCCCCHHHHHhCC-------ccccCCCEEEEEeCC-----hhhhhccccHHHHHH
Q 007422 194 KISR--------ERTFGVLTKIDLMDKGTDAADILEGK-------SYRLKFPWIGVVNRS-----QADINKNVDMIAARR 253 (604)
Q Consensus 194 ~l~~--------~r~i~VltK~D~~~~~~~~~~~l~~~-------~~~l~~g~~~v~~~s-----~~~i~~~~~~~~~~~ 253 (604)
+..+ .++++|+|++|.+..+ ...+.+... ...++..|+.+.++. +.++.+++..++...
T Consensus 105 ~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 105 ETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred HHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 3322 7899999999988754 233332221 123334477777764 356777888887777
Q ss_pred HH-HHHhccC
Q 007422 254 RE-REYFSTT 262 (604)
Q Consensus 254 ~e-~~ff~~~ 262 (604)
.| ..++++.
T Consensus 184 ~~~~~~~~~~ 193 (196)
T cd01852 184 KENGGKPYTN 193 (196)
T ss_pred HhcCCCCCCC
Confidence 77 4454443
No 20
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=4.7e-14 Score=140.81 Aligned_cols=150 Identities=23% Similarity=0.361 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC
Q 007422 4 LISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG 82 (604)
Q Consensus 4 l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~ 82 (604)
+..+++++.+-+.-++... .-..||+.+.++|+|+|.|.||+|||||+++|++.+.--... |
T Consensus 137 ~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y------P----------- 199 (346)
T COG1084 137 VASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY------P----------- 199 (346)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC------C-----------
Confidence 4456666666555555432 124789999999999999999999999999999987411111 1
Q ss_pred CcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHH
Q 007422 83 SREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDI 162 (604)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i 162 (604)
|+...|.+.-...+...+++|||||+-+-+.. -...+
T Consensus 200 --------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN~I 236 (346)
T COG1084 200 --------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERNEI 236 (346)
T ss_pred --------------------------------------ccccceeEeeeecCCceEEEecCCcccCCChH-----HhcHH
Confidence 22222333333333447899999999876543 33445
Q ss_pred HHHHHHhhcC-CCeEEEEEecCCC-cchhhHHHHhhh-------cceeEEEecccCCCCC
Q 007422 163 ENMVRSYIEK-PNCIILAISPANQ-DLATSDAIKISR-------ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 163 ~~~~~~~i~~-~d~iIl~v~~a~~-d~~~~~~l~l~~-------~r~i~VltK~D~~~~~ 213 (604)
+...-..+++ .++|+++++++.. .+...+...+.. .|++.|+||+|..+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 5555555665 5566666666543 233222222222 7899999999998654
No 21
>PRK11058 GTPase HflX; Provisional
Probab=99.53 E-value=1.1e-13 Score=148.63 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=98.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|++||.+|||||||+|+|+|.++...+...+|+-|++-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 6799999999999999999999998864333334555553221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~-- 190 (604)
+..++...+.|+||||+.+. .|.+..+.+.. +..+++.+|++|+|++..+......
T Consensus 239 -----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 239 -----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred -----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 11122225789999999552 13334444444 3567889999999887665432221
Q ss_pred ---HHHHhhh---cceeEEEecccCCCCCCCHHHHHhCCccccCCC-EEEEEeCChhhhhccccHHHHH
Q 007422 191 ---DAIKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ---~~l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
..+.... .|+++|+||+|+.+......+.. ..+.+ ++.+++.++.++++++..+...
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~-----~~~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRD-----EENKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHH-----hcCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2233222 78999999999975321111111 11223 4678888888888777666543
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.1e-13 Score=144.24 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-++.|++||.+|||||||||+|++.+.-......+|+.|+.-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4678999999999999999999987632112234566663322
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
+...+...++++||||+...+..+ ..+...+..+++.++++|+|++.++.+ +....
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYK 256 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHH
Confidence 111123368999999997644321 123344566788899999988766543 21111
Q ss_pred -H---HHh-----hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 -A---IKI-----SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 -~---l~l-----~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+ +.. ...|.++|+||+|+.+...................++.+++.+..++++++..+....
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 1 111 2378999999999876442211111111112235688899998888888777665443
No 23
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.50 E-value=1.3e-12 Score=141.83 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
+-++|+++|.+|+|||||+|+|+|.+..+.+. ..+|+-+.+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~------------------------------------ 257 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEH------------------------------------ 257 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEE------------------------------------
Confidence 45799999999999999999999987522221 12222221111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHH-HHHHHHHhhcCCCeEEEEEecCCCcc-hh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQD-IENMVRSYIEKPNCIILAISPANQDL-AT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~-i~~~~~~~i~~~d~iIl~v~~a~~d~-~~ 189 (604)
+.. +...+.++||||+.... +..+. --..+..+++.+|++++|++..+... ..
T Consensus 258 ------------------i~~-~g~~i~l~DT~G~~~~~------~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~ 312 (449)
T PRK05291 258 ------------------INL-DGIPLRLIDTAGIRETD------DEVEKIGIERSREAIEEADLVLLVLDASEPLTEED 312 (449)
T ss_pred ------------------EEE-CCeEEEEEeCCCCCCCc------cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH
Confidence 111 12358999999986421 12221 12235678999999998876644321 11
Q ss_pred hHHHHhh-hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 190 SDAIKIS-RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 190 ~~~l~l~-~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
...+... ..|+++|+||+|+.+..... ......++.+++.++.+++++...+.....
T Consensus 313 ~~~l~~~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 313 DEILEELKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred HHHHHhcCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 1222222 38999999999997543211 122346899999999999988887765543
No 24
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=128.77 Aligned_cols=123 Identities=28% Similarity=0.410 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+.|.||++|..|+|||||||+|+|.+-|.+.+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk----------------------------------------------- 55 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSK----------------------------------------------- 55 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCC-----------------------------------------------
Confidence 789999999999999999999999774433332
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEE--EEecCCCcch--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIIL--AISPANQDLA-- 188 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl--~v~~a~~d~~-- 188 (604)
.+|.+..+. .+..+ ..+.|||+||+.-... ++...+.+..++..|++.-..+.. +++++.....
T Consensus 56 -tPGrTq~iN-------ff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~ 123 (200)
T COG0218 56 -TPGRTQLIN-------FFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL 123 (200)
T ss_pred -CCCccceeE-------EEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHH
Confidence 122222111 11111 1388999999965432 445788899999999986322322 2344443322
Q ss_pred ---hhHHHHhhhcceeEEEecccCCCCCC
Q 007422 189 ---TSDAIKISRERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 189 ---~~~~l~l~~~r~i~VltK~D~~~~~~ 214 (604)
.-+++.....++++|+||+|.+.++.
T Consensus 124 D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 124 DREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 22334444499999999999998764
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=3.8e-13 Score=125.20 Aligned_cols=156 Identities=18% Similarity=0.271 Sum_probs=92.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..+|+++|.+|||||||+|+|+|.++.+.+... +|+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI---------------------------------------- 42 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE----------------------------------------
Confidence 468999999999999999999998753222211 111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
. .+.......+.+|||||+...... ....+......++..+|.++++++..+.. .....
T Consensus 43 --------------~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~ 102 (168)
T cd04163 43 --------------R-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEF 102 (168)
T ss_pred --------------E-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHH
Confidence 0 011112236899999998764322 22334556677889999998887665531 11122
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCcccc-CCCEEEEEeCChhhhhccccHH
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
..... +.+.++|+||+|+........+......... ...++.+++..+.+++++...+
T Consensus 103 ~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 103 ILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred HHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHH
Confidence 22222 2799999999999843333333222221222 2467778877777666555443
No 26
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.47 E-value=5.7e-13 Score=125.36 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=87.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|++||.+|||||||+|+|.|.+..+.....+|+.|..-.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~---------------------------------------- 41 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGV---------------------------------------- 41 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceE----------------------------------------
Confidence 4899999999999999999987642222122233331110
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cc-hh-hHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DL-AT-SDA 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~-~~-~~~ 192 (604)
+...+...+.|+||||+.......+ .+.......+..+|++++|++..+. +. .. ..+
T Consensus 42 --------------~~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 42 --------------VRVDDGRSFVVADIPGLIEGASEGK------GLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred --------------EEcCCCCeEEEEecCcccCcccccC------CchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 1111113789999999864322110 1122233455679999998876654 11 11 111
Q ss_pred ---HH-h----hhcceeEEEecccCCCCCCCHHHHHhCCccc-cCCCEEEEEeCChhhhhccccHH
Q 007422 193 ---IK-I----SRERTFGVLTKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 193 ---l~-l----~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+. . ...|.++|+||+|+.++.... ..+...... ....++.+++.++.++++++..+
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHH
Confidence 11 1 237889999999987654421 111111111 13457888888888777665543
No 27
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.47 E-value=6e-12 Score=136.03 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+.++|+++|.+|+|||||+|+|+|.+. .+++..|.+.+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pgtTr------------------------------------- 239 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKGTTR------------------------------------- 239 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcEE-------------------------------------
Confidence 567999999999999999999999764 22222221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDI-ENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i-~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
+.+...+... ...+.+|||||+..... ..+.. -.....|++.+|++++|++..+.......
T Consensus 240 -----------d~~~~~i~~~-g~~v~l~DTaG~~~~~~------~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~ 301 (442)
T TIGR00450 240 -----------DVVEGDFELN-GILIKLLDTAGIREHAD------FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF 301 (442)
T ss_pred -----------EEEEEEEEEC-CEEEEEeeCCCcccchh------HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH
Confidence 0000011111 12578999999965321 11211 13456889999999998876543211111
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++... ..|+++|+||+|+.+. +...+. ..++..++.+++.+ .++++++..+....
T Consensus 302 ~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 302 LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 33323 2789999999998654 222111 12334678888886 46666665554433
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.46 E-value=2.6e-13 Score=127.33 Aligned_cols=153 Identities=19% Similarity=0.258 Sum_probs=91.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
|.|+|+|.+|+|||||+|+|++..+.......+|......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998876322111112111000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch-hhHHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAI 193 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~-~~~~l 193 (604)
.+....+...++++|||||.... ..+...++..+|++++++++.+.+.. ....+
T Consensus 41 ------------~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~ 95 (168)
T cd01887 41 ------------EVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDIAILVVAADDGVMPQTIEAI 95 (168)
T ss_pred ------------EEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCEEEEEEECCCCccHHHHHHH
Confidence 00011012347899999997432 44566778899999888876543221 11222
Q ss_pred ---HhhhcceeEEEecccCCCCCCC-HHHHHhCC------ccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 194 ---KISRERTFGVLTKIDLMDKGTD-AADILEGK------SYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 194 ---~l~~~r~i~VltK~D~~~~~~~-~~~~l~~~------~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
...+.|.++|+||+|+.+...+ ....+... .......++.+++..+.++++++..+...
T Consensus 96 ~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 96 KLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred HHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 2233899999999998753321 11222111 11122467888888888887776665443
No 29
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.46 E-value=6.8e-13 Score=129.25 Aligned_cols=153 Identities=18% Similarity=0.312 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|+|+|+|.+|||||||+|+|+|.++.+.+...+|..|....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~------------------------------------- 82 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRR------------------------------------- 82 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEE-------------------------------------
Confidence 5799999999999999999999998753333323332221110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh---
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--- 189 (604)
+..++...+++|||||+.+.. +..........+ ..+..+|+++++++..+.....
T Consensus 83 -----------------~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~ 140 (204)
T cd01878 83 -----------------LRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIE 140 (204)
T ss_pred -----------------EEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHH
Confidence 112222368999999986431 112223333333 4567899998887654433221
Q ss_pred --hHHHHhhh---cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 190 --SDAIKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 190 --~~~l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.+.+.... .++++|+||+|+.+..... ... ......++.+++..+.+++++...+
T Consensus 141 ~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~L 200 (204)
T cd01878 141 TVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERL----EAGRPDAVFISAKTGEGLDELLEAI 200 (204)
T ss_pred HHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HHh----hcCCCceEEEEcCCCCCHHHHHHHH
Confidence 12222222 6899999999997654221 111 1223457888988888777665543
No 30
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=5.8e-13 Score=143.94 Aligned_cols=159 Identities=22% Similarity=0.232 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-+..|++||.+|||||||||+|++.+.-......+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4678999999999999999999997632112234555553222
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC----c-c
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ----D-L 187 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~----d-~ 187 (604)
+... ...++|+||||+...... ...+......+++++|+||+||+.++. + +
T Consensus 201 -----------------v~~~-~~~f~laDtPGliegas~------g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 201 -----------------VQAG-DTRFTVADVPGLIPGASE------GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL 256 (500)
T ss_pred -----------------EEEC-CeEEEEEECCCCccccch------hhHHHHHHHHHHHhcCEEEEEECCcccccccCch
Confidence 1111 126899999999764322 112223345678899999998876542 1 1
Q ss_pred hhhHH----H--------------HhhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 188 ATSDA----I--------------KISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 188 ~~~~~----l--------------~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
...+. + .+...|.|+|+||+|+.+... ..+.+.......+..++.+++.+..++++++..+
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 11111 1 123489999999999864332 2222211111123457888888888887776665
Q ss_pred HHHH
Q 007422 250 AARR 253 (604)
Q Consensus 250 ~~~~ 253 (604)
....
T Consensus 336 ~ell 339 (500)
T PRK12296 336 AELV 339 (500)
T ss_pred HHHH
Confidence 5443
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=1.6e-12 Score=122.15 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=84.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
|.|+++|.+|+|||||+|+|++..+ +.+. ...|..+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~---------------------------------------- 39 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFV---------------------------------------- 39 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeE----------------------------------------
Confidence 7899999999999999999999875 2211 111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCCcc---hh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDL---AT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i-~~~d~iIl~v~~a~~d~---~~ 189 (604)
.........++||||||+...+... .. .+.......+ ..+|++|+|+++.+... ..
T Consensus 40 ---------------~~~~~~~~~~~i~Dt~G~~~~~~~~--~~---~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~ 99 (168)
T cd01897 40 ---------------GHFDYKYLRWQVIDTPGLLDRPLEE--RN---TIEMQAITALAHLRAAVLFLFDPSETCGYSLEE 99 (168)
T ss_pred ---------------EEEccCceEEEEEECCCcCCccccC--Cc---hHHHHHHHHHHhccCcEEEEEeCCcccccchHH
Confidence 0001112378999999985432111 10 1111111122 23678888776654321 11
Q ss_pred -hHHHHhh-----hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 190 -SDAIKIS-----RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 190 -~~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
..++... ..|+++|+||+|+.+... .... ..........++.+++.++.++++++..+.
T Consensus 100 ~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 100 QLSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSEI-EEEEELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred HHHHHHHHHhhcCcCCeEEEEEccccCchhh-HHHH-HHhhhhccCceEEEEecccCCHHHHHHHHH
Confidence 1222222 378999999999976432 1111 111111234678888888888877665443
No 32
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.42 E-value=1.3e-12 Score=136.00 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-++.|++||.+|||||||+|+|++..........+|+.|+.-.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v------------------------------------ 199 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV------------------------------------ 199 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE------------------------------------
Confidence 45789999999999999999999876322222345666633221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc---c-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---L-A 188 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d---~-~ 188 (604)
...+...++|+||||+......+ ..+...+.+++++++++++|++..+.+ . .
T Consensus 200 ------------------~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 200 ------------------RVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE 255 (329)
T ss_pred ------------------EeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHH
Confidence 11112368999999997643321 123344556678899999988765431 1 1
Q ss_pred hhH-H---HH-----hhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 189 TSD-A---IK-----ISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 189 ~~~-~---l~-----l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.-. + +. +...|.++|+||+|+.+... ..+..+.....+...++.+++.+..++++++..+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHH
Confidence 111 1 11 12378999999999976532 22222111112234578888888887777665443
No 33
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.41 E-value=7.8e-13 Score=124.47 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||++++++.+|-+. ..+++......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~--------------------------------------- 42 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKI--------------------------------------- 42 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEE---------------------------------------
Confidence 47899999999999999999999876221 11111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~ 191 (604)
..+.+.+ ....+.++||||.... ..+...+++++|++|++++..+.+. . ...
T Consensus 43 ------------~~~~~~~-~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 43 ------------RTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred ------------EEEEECC-EEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 0111111 1126889999996432 4556788999999999886544221 1 112
Q ss_pred HHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 192 AIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 192 ~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
++.... .|+++|.||+|+.+......+.........+.+|+.+++.++.++++++..+..
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222111 689999999999854322211111112234567899999998888877665443
No 34
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.41 E-value=2e-12 Score=121.79 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=92.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|||.+|+|||||+|++++..+-+......+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 42 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------- 42 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE-----------------------------------------
Confidence 468999999999999999999998763332211111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~ 191 (604)
...+.+.+ ....+.+|||||... ...+...|++.+|++++|++..+... ....
T Consensus 43 -----------~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~ 97 (168)
T cd01866 43 -----------ARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRETFNHLTS 97 (168)
T ss_pred -----------EEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 00111111 112588999999532 35667889999999999887654211 1112
Q ss_pred HHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 192 AIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 192 ~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
++... ..|+++|.||+|+.++...............+..|+.+++.++.++++.+..+...
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22211 16799999999987543211111111112345678999999988888776655443
No 35
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.40 E-value=2.5e-12 Score=137.45 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=91.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
++.|++||.+|||||||||+|++.+.-......+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 349999999999999999999997621111223455552211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC---cc-hh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---DL-AT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~---d~-~~ 189 (604)
+...+...++|+||||+...+..+ ..+......++++++++|+|++.++. +. ..
T Consensus 200 ----------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~ 257 (424)
T PRK12297 200 ----------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIED 257 (424)
T ss_pred ----------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChHHH
Confidence 111112368999999997643321 12233345567789999998876543 21 11
Q ss_pred hH-H---HH-----hhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 190 SD-A---IK-----ISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~-~---l~-----l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+ + +. +...|.++|+||+|+.+....+..+.. .+...++.+++.++.++++++..+..
T Consensus 258 ~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~----~l~~~i~~iSA~tgeGI~eL~~~L~~ 324 (424)
T PRK12297 258 YEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE----KLGPKVFPISALTGQGLDELLYAVAE 324 (424)
T ss_pred HHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH----HhCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 11 1 11 123899999999997432211222211 12245778888877777776665543
No 36
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.40 E-value=4.5e-12 Score=117.08 Aligned_cols=148 Identities=21% Similarity=0.243 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.+|+++|++|+|||||+|+|+|..+...+..+ +|..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVI----------------------------------------- 40 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceE-----------------------------------------
Confidence 36999999999999999999998752222211 111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDA 192 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~ 192 (604)
...+. .....+++|||||+...... .....-..+..++.++|+++++++..+... .....
T Consensus 41 -------------~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 101 (157)
T cd04164 41 -------------EESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEI 101 (157)
T ss_pred -------------EEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHH
Confidence 00011 11236899999998664321 222222345567789999988876654221 12222
Q ss_pred HH-hhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 193 IK-ISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 193 l~-l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+. ....++++|+||+|+.+.... ........++.+++..+.+++++...+
T Consensus 102 ~~~~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 102 LELPADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred HHhhcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHH
Confidence 22 233999999999999865432 112223568888888777776655543
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=2.3e-12 Score=141.41 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..|.|+|||.+|+|||||+|+|+|..+...+.. .+|+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~------------------------------------------ 74 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTR------------------------------------------ 74 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCE------------------------------------------
Confidence 569999999999999999999999764111111 1111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~ 190 (604)
+.+...+... ...+.||||||+.... ..+...+...+..+++.+|++|+|++..+... ...
T Consensus 75 ------------d~~~~~~~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~ 136 (472)
T PRK03003 75 ------------DRVSYDAEWN-GRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDE 136 (472)
T ss_pred ------------eeEEEEEEEC-CcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH
Confidence 1111111111 2258899999986321 22556677788889999999999887655321 122
Q ss_pred HHH---HhhhcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAI---KISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l---~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
... +....|+++|+||+|+.....+..+.. .++. ..+.+++.++.++++++..+....
T Consensus 137 ~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~-----~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 137 AVARVLRRSGKPVILAANKVDDERGEADAAALW-----SLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred HHHHHHHHcCCCEEEEEECccCCccchhhHHHH-----hcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 222 223389999999999865332222221 2222 246899999999988877665543
No 38
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.40 E-value=1.9e-12 Score=124.87 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=71.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~------~~r~i~VltK~D 208 (604)
.+.||||||... ...+...|++.+|++|+|++..+.+. . ...++... ..|+++|+||+|
T Consensus 51 ~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 688999999533 24556788999999999886654321 1 11122221 168999999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHh
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYF 259 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff 259 (604)
+..+...............+.+|+.+++.++.++++++..+.....+....
T Consensus 118 l~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 118 MSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred chhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 875332111111111122345799999999999999999888777776544
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.40 E-value=1.1e-12 Score=123.19 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=65.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~~------~r~i~VltK~D 208 (604)
.+.+|||||..+. ..+...+++.+|++++|++..+.+. ...+++.... .|+++|+||+|
T Consensus 51 ~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 51 KLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEECCChHHH-------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 5789999996542 5567889999999999887654321 1122332222 67999999999
Q ss_pred CCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 209 LMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 209 ~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+.+.... ..+.. .....++.+|+.+++.++.++++++..+..
T Consensus 118 l~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 118 MEDERVVSSERGR-QLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred cCcccccCHHHHH-HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9765431 11111 111234456899999999888887776544
No 40
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.40 E-value=1e-12 Score=128.82 Aligned_cols=162 Identities=22% Similarity=0.309 Sum_probs=90.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+|+|+|..||||||++|+|+|.+.++.+.+ .||..+....- .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------~ 45 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------E 45 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE------------------------------------E
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee------------------------------------e
Confidence 699999999999999999999998887643 45554432220 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l 193 (604)
+ +...+++|||||+.+.... ++.+...+...+......+|+++||+............+
T Consensus 46 ----------------~---~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l 104 (212)
T PF04548_consen 46 ----------------V---DGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVL 104 (212)
T ss_dssp ----------------E---TTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHH
T ss_pred ----------------e---cceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHH
Confidence 1 1136899999999765432 222334444444445567899888754332222223333
Q ss_pred Hhhh--------cceeEEEecccCCCCCCCHHHHHh--------CCccccCCCEEEEEeCCh------hhhhccccHHHH
Q 007422 194 KISR--------ERTFGVLTKIDLMDKGTDAADILE--------GKSYRLKFPWIGVVNRSQ------ADINKNVDMIAA 251 (604)
Q Consensus 194 ~l~~--------~r~i~VltK~D~~~~~~~~~~~l~--------~~~~~l~~g~~~v~~~s~------~~i~~~~~~~~~ 251 (604)
+... ..+|+|+|..|...+.. ..+.+. .....++..|+.+.+++. ..+.+++..++.
T Consensus 105 ~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~ 183 (212)
T PF04548_consen 105 ELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEE 183 (212)
T ss_dssp HHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHH
Confidence 3332 88999999999887664 333333 122345556777777622 233445555554
Q ss_pred HHHH
Q 007422 252 RRRE 255 (604)
Q Consensus 252 ~~~e 255 (604)
...+
T Consensus 184 mv~~ 187 (212)
T PF04548_consen 184 MVQE 187 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 41
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.40 E-value=1.7e-12 Score=121.13 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=60.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHH---hhh-cceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIK---ISR-ERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~---l~~-~r~i~VltK~D~~ 210 (604)
..+.+|||||..+. ...+..++..+|++++|++..+.. ....+.+. ... .++++|+||+|+.
T Consensus 51 ~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKF-------------IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHH-------------HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 37899999997432 334556788999999987654311 11112222 223 4899999999997
Q ss_pred CCCC------CHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 211 DKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 211 ~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+... +..+.+.... .....++.+++.++.++++++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 118 DEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHHHHHHH
Confidence 6421 1112221110 023568999999888887765443
No 42
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.40 E-value=1.8e-12 Score=120.84 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=89.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+++|.+|+|||||+|+++|.++.+......|......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 689999999999999999999886332221111111000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l 193 (604)
.+.+.+ ....+.+|||||.... ..++..+++.+|++|+|++..+.. +.. ..++
T Consensus 41 -----------~~~~~~-~~~~l~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 -----------TMYLED-KTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred -----------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 011111 1125889999995432 567788999999998887654421 111 1222
Q ss_pred Hhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 194 KISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 194 ~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.... .|+++|+||+|+........+.........+..++.+++..+.+++++...+.
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 2211 68999999999964432221111111223346788899988888877665543
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.39 E-value=1.8e-12 Score=121.43 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||++++++.++.+.....++.....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---------------------------------------- 42 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFAT---------------------------------------- 42 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEE----------------------------------------
Confidence 4689999999999999999999988633222111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~ 191 (604)
..+.+.+ ....+.++||||.... ..+...+++.++++|++++..+... . ...
T Consensus 43 ------------~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 43 ------------RSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred ------------EEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 0111111 1125889999996432 5567788999999999887654221 1 112
Q ss_pred HHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
++.... .|+++|.||+|+.+......+.........+.+|+.+++.++.++++++..+.
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 222221 67899999999875432111111111112356799999999988877665543
No 44
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.39 E-value=1.4e-12 Score=122.34 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=65.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~------~~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...|++.+|++|+|++..+.+. ....++... ..+.++|.||+|
T Consensus 52 ~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence 5789999996432 5567789999999999987655321 111222222 168899999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+........+.........+.+|+.+++.++.++++++..+..
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 119 LTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 8654321111111112234567999999999888877765543
No 45
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=4.6e-12 Score=118.93 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.++|+++|.+|+|||||+|+|+|....+.+..+. |+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 42 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSID--------------------------------------- 42 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCcee---------------------------------------
Confidence 4789999999999999999999986533332211 111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~ 191 (604)
.. +.. +..++++|||||+....... .............++..+|+++++++..+... ....
T Consensus 43 -------------~~--~~~-~~~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~ 104 (174)
T cd01895 43 -------------VP--FEY-DGKKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR 104 (174)
T ss_pred -------------eE--EEE-CCeeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH
Confidence 00 111 12357899999997642211 11111111223456789999988876544321 1112
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCH----HHHHhCCcc-ccCCCEEEEEeCChhhhhccccH
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDA----ADILEGKSY-RLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~----~~~l~~~~~-~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
.+..+ +.+.++|+||+|+.+..... .+.+..... .....++.+++.++.+++++...
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDA 169 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHH
Confidence 22222 38999999999998763211 112211100 11245888888888777665443
No 46
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.39 E-value=2.7e-12 Score=123.95 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
.+|.|+|+|.+|+|||||+|+|+|.++.+..+.. +|+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997643332211 12111
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCC---eEEEEEecCCCcc
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPN---CIILAISPANQDL 187 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d---~iIl~v~~a~~d~ 187 (604)
..... ..++.||||||+.... .+.........++..|++..+ .++++++... ..
T Consensus 64 ------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~ 120 (196)
T PRK00454 64 ------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH-PL 120 (196)
T ss_pred ------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCC-CC
Confidence 01111 1479999999976432 223344556677788887664 4555443332 22
Q ss_pred hh--h---HHHHhhhcceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 188 AT--S---DAIKISRERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 188 ~~--~---~~l~l~~~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.. . ..+.....++++|+||+|+.+.+.. ..+.+..........++.+++.++.+++++...+....+
T Consensus 121 ~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 121 KELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 11 1 2222233788999999999865421 111111100111356788888888888777766655443
No 47
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.38 E-value=1.9e-12 Score=121.65 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=91.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-+|+++|++|+|||||++++.+..|.+... +++.......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~~~~~--------------------------------------- 42 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFGTR--------------------------------------- 42 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-cccceeEEEE---------------------------------------
Confidence 479999999999999999999887633221 1111110000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~ 192 (604)
.+.+.+ ....+.+|||||.... ..+...|++++|++|+|++..+... ....+
T Consensus 43 ------------~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 96 (166)
T cd04122 43 ------------IIEVNG-QKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96 (166)
T ss_pred ------------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 011111 1125789999996432 5667889999999999987665321 11233
Q ss_pred HHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 193 IKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.... .++++|.||+|+..+.....+.........+..|+.+++.++.++++.+..+.
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 33221 67899999999876543111111111122345799999999988887665443
No 48
>PRK04213 GTP-binding protein; Provisional
Probab=99.38 E-value=3.1e-12 Score=124.24 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 568999999999999999999999874 33221 112111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc----CCCeEEEEEecCCCc-
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE----KPNCIILAISPANQD- 186 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~----~~d~iIl~v~~a~~d- 186 (604)
..+.+ .++++|||||+...... ++...+.++.++..|+. .++.+++|+++....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 15899999997543221 22234556666666664 346666666553311
Q ss_pred ----ch-------hhHHHHh---hhcceeEEEecccCCCCCC-CHHHHHhCCcc--cc---CCCEEEEEeCChhhhhccc
Q 007422 187 ----LA-------TSDAIKI---SRERTFGVLTKIDLMDKGT-DAADILEGKSY--RL---KFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 187 ----~~-------~~~~l~l---~~~r~i~VltK~D~~~~~~-~~~~~l~~~~~--~l---~~g~~~v~~~s~~~i~~~~ 246 (604)
+. ..+.+.. ...|.++|+||+|+.+... ...++...... +. ...++.+++.++ ++++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHH
Confidence 00 0111222 2389999999999875431 11222111111 10 123688999988 888877
Q ss_pred cHHHH
Q 007422 247 DMIAA 251 (604)
Q Consensus 247 ~~~~~ 251 (604)
..+..
T Consensus 185 ~~l~~ 189 (201)
T PRK04213 185 EAIRK 189 (201)
T ss_pred HHHHH
Confidence 66654
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.38 E-value=2.6e-12 Score=119.19 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=63.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhHHHH---hhhcceeEEEecccCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIK---ISRERTFGVLTKIDLMD 211 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~~l~---l~~~r~i~VltK~D~~~ 211 (604)
++.+|||||+....... .. ..+...++. .+|++|++++....+. ...... ....+.++|+||+|+.+
T Consensus 44 ~~~liDtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS----ED---EKVARDFLLGEKPDLIVNVVDATNLER-NLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEEEECCCccccCCCC----hh---HHHHHHHhcCCCCcEEEEEeeCCcchh-HHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 68999999997643221 11 244556664 8999998876554321 112221 12389999999999976
Q ss_pred CCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 212 KGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 212 ~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
........ ......++..++.+++.++.+++.++..+.
T Consensus 116 ~~~~~~~~-~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 116 KRGIKIDL-DKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred cccchhhH-HHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 53211111 111122345688999988888776655443
No 50
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.38 E-value=2.9e-12 Score=122.24 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (604)
...|.|+|+|.+|+|||||+|+|+|..+.+.-+. .+|+.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 3789999999999999999999999864222111 111111
Q ss_pred hhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCeEEEEEecCCCc
Q 007422 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQD 186 (604)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~---~d~iIl~v~~a~~d 186 (604)
....+ + .++.+|||||+..... +......+..+...|++. +++++++++.. ..
T Consensus 58 ----------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~-~~ 113 (179)
T TIGR03598 58 ----------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIR-HP 113 (179)
T ss_pred ----------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCC-CC
Confidence 00111 1 2689999999865322 222345566667778765 46777766543 33
Q ss_pred chhhH--HHHhh---hcceeEEEecccCCCCCCC------HHHHHhCCccccCCCEEEEEeCChhhh
Q 007422 187 LATSD--AIKIS---RERTFGVLTKIDLMDKGTD------AADILEGKSYRLKFPWIGVVNRSQADI 242 (604)
Q Consensus 187 ~~~~~--~l~l~---~~r~i~VltK~D~~~~~~~------~~~~l~~~~~~l~~g~~~v~~~s~~~i 242 (604)
....+ .+... +.|+++|+||+|+++.... +.+.+.. ......++.+++.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~--~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 114 LKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKK--DADDPSVQLFSSLKKTGI 178 (179)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh--ccCCCceEEEECCCCCCC
Confidence 33222 22333 2789999999999854311 1112211 111236889999888765
No 51
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.38 E-value=1.8e-12 Score=119.83 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=65.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhh---hcceeEEEecccCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKIS---RERTFGVLTKIDLMDK 212 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~---~~r~i~VltK~D~~~~ 212 (604)
.+.+|||||+..... .....+...+..+++.+|.+++++++.... .......+.+ ..|+++|+||+|+.+.
T Consensus 46 ~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 46 EFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 689999999976432 234445556677889999998887654422 2222223333 3899999999999765
Q ss_pred CCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHH
Q 007422 213 GTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 213 ~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 249 (604)
... ...+. .++. .++.+++..+.++++++..+
T Consensus 121 ~~~-~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 121 EDE-AAEFY----SLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred HHH-HHHHH----hcCCCCeEEEecccCCCHHHHHHHH
Confidence 432 11111 2222 46778888777777665544
No 52
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.38 E-value=2e-12 Score=121.05 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=88.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|++++|||||+|++++..+.+ ...++...-
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~-------------------------------------------- 36 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGID-------------------------------------------- 36 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccee--------------------------------------------
Confidence 68999999999999999999988622 111110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l 193 (604)
.....+.+.+ ....+.++||||.... ..+...+++.+|++|+|++..+.+. ....++
T Consensus 37 -------~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 37 -------YGVKKVSVRN-KEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred -------EEEEEEEECC-eEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 0000111111 1236889999997432 4566788999999999886654321 111222
Q ss_pred Hh-----------hhcceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 194 KI-----------SRERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 194 ~l-----------~~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.. ...|+++|.||+|+.++.. ...+... .....+..|+.+++.++.++++++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 21 1267999999999974322 1111110 1112235689999999888877766543
No 53
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=132.38 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
+..+|++||.||+|||||+|+|+|.+-.-++.. .+||-+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~---------------------------------------- 216 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS---------------------------------------- 216 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc----------------------------------------
Confidence 568999999999999999999999875323222 233333
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
|...+... ...+.+|||.|+.+-..-....+.-. -.-+...+..+|++++++ ++...+..++
T Consensus 217 --------------I~~~~e~~-~~~~~liDTAGiRrk~ki~e~~E~~S--v~rt~~aI~~a~vvllvi-Da~~~~~~qD 278 (444)
T COG1160 217 --------------IDIEFERD-GRKYVLIDTAGIRRKGKITESVEKYS--VARTLKAIERADVVLLVI-DATEGISEQD 278 (444)
T ss_pred --------------eeeeEEEC-CeEEEEEECCCCCcccccccceEEEe--ehhhHhHHhhcCEEEEEE-ECCCCchHHH
Confidence 33333322 23789999999976543211111111 122457788999887765 5666666665
Q ss_pred H--HHhh---hcceeEEEecccCCCCCCCHHHHHhCC-cccc-CCC---EEEEEeCChhhhhccccHHHHHHHHHHHhcc
Q 007422 192 A--IKIS---RERTFGVLTKIDLMDKGTDAADILEGK-SYRL-KFP---WIGVVNRSQADINKNVDMIAARRREREYFST 261 (604)
Q Consensus 192 ~--l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l-~~g---~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~ 261 (604)
. ..++ .+.+++|+||||++++.+...+..... ...+ .++ .+.+++..++++..+++.+....
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~-------- 350 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY-------- 350 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH--------
Confidence 4 2222 289999999999998743222221111 0111 133 45666666676666555433211
Q ss_pred CCCCchhhhccChHHHHHHHHHHHH
Q 007422 262 TPEYKHLAQRMGSEHLAKMLSKHLE 286 (604)
Q Consensus 262 ~~~~~~~~~~~g~~~L~~~L~~~L~ 286 (604)
..|.. +.++..|.+.|.....
T Consensus 351 -~~~~~---ri~Ts~LN~~l~~a~~ 371 (444)
T COG1160 351 -ECATR---RISTSLLNRVLEDAVA 371 (444)
T ss_pred -HHhcc---ccCHHHHHHHHHHHHH
Confidence 11333 5677666665544433
No 54
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.37 E-value=3.1e-12 Score=112.89 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=69.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+..-..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~-------------------------------------- 42 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF-------------------------------------- 42 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE--------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee--------------------------------------
Confidence 689999999999999999999765444443 45655522110
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~ 192 (604)
.. +...+.|+||||+......+ ........+...+..+|++++|+...+ ... ....
T Consensus 43 ----------------~~-~~~~~~~vDtpG~~~~~~~~----~~~~~~~~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~ 100 (116)
T PF01926_consen 43 ----------------EY-NNKKFILVDTPGINDGESQD----NDGKEIRKFLEQISKSDLIIYVVDASN-PITEDDKNI 100 (116)
T ss_dssp ----------------EE-TTEEEEEEESSSCSSSSHHH----HHHHHHHHHHHHHCTESEEEEEEETTS-HSHHHHHHH
T ss_pred ----------------ee-ceeeEEEEeCCCCcccchhh----HHHHHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHH
Confidence 00 12256899999997643210 111123334555689999999887433 322 1222
Q ss_pred HHh--hhcceeEEEec
Q 007422 193 IKI--SRERTFGVLTK 206 (604)
Q Consensus 193 l~l--~~~r~i~VltK 206 (604)
++. ...|+++|+||
T Consensus 101 ~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELKNKKPIILVLNK 116 (116)
T ss_dssp HHHHHTTSEEEEEEES
T ss_pred HHHHhcCCCEEEEEcC
Confidence 222 33999999998
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.37 E-value=3.5e-12 Score=119.29 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=63.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.+|||||..+. ..+...+++.+|+++++++..+.. +.. ..+.... ..|+++|.||+
T Consensus 49 ~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 49 LLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999997653 456678899999998887654421 111 1111111 16899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
|+.+......+.........+.+|+.+++.++.++++++..+.
T Consensus 116 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 116 DLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred cccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9876432111111111112346789999999888887766554
No 56
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.37 E-value=1.3e-11 Score=141.40 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=96.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..+|+++|.+|+|||||+|+|+|.+. ..++-+ +|.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTv------------------------------------------- 38 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTV------------------------------------------- 38 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceE-------------------------------------------
Confidence 35899999999999999999999864 222211 111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~ 190 (604)
+.....+.. +...+.+|||||+.+......+.+..+. +...|+. .+|++++|+++.+.+....
T Consensus 39 -----------e~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD~vI~VvDat~ler~l~ 103 (772)
T PRK09554 39 -----------ERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDADLLINVVDASNLERNLY 103 (772)
T ss_pred -----------eeEEEEEEc-CceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCCEEEEEecCCcchhhHH
Confidence 011111211 2236899999999875432221222322 3455654 7999988877655332111
Q ss_pred HH--HHhhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DA--IKISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~--l~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
-. +...+.|+++|+||+|+.++.....+. +.....++.+++.++++.+++++++...+...
T Consensus 104 l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 104 LTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred HHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 11 122238999999999987543322211 11223456789999999999988877766543
No 57
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=1.2e-11 Score=135.80 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|++||.+|+|||||+|+|+|.++...+ ...+|+-+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~------------------------------------ 253 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSL------------------------------------ 253 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEE------------------------------------
Confidence 5689999999999999999999998752222 222333221111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCCcchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM-VRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~-~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
+.+ +...+.||||||+.+..... ...+....+ ...+++.+|++|+|++..+. ...+
T Consensus 254 ----------------~~~---~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~-~s~~ 310 (472)
T PRK03003 254 ----------------IEL---GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEP-ISEQ 310 (472)
T ss_pred ----------------EEE---CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CCHH
Confidence 111 11256899999986432211 112222222 34578999999998865442 2222
Q ss_pred --HHHHhh---hcceeEEEecccCCCCCCC--HHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 --DAIKIS---RERTFGVLTKIDLMDKGTD--AADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 --~~l~l~---~~r~i~VltK~D~~~~~~~--~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..+..+ ..++|+|+||+|+.++... ....+... .......++.+++.++.++++++..+..
T Consensus 311 ~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 311 DQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred HHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 222222 2889999999999753221 11111111 1111246788899888888877665543
No 58
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.37 E-value=5.7e-12 Score=115.09 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=58.6
Q ss_pred eEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhhcceeEEEecccCCCCCCCHH
Q 007422 139 TLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISRERTFGVLTKIDLMDKGTDAA 217 (604)
Q Consensus 139 ~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~~r~i~VltK~D~~~~~~~~~ 217 (604)
.+|||||.... .....+.+. .+++++|++|+|++..+.. .....+......|.++|+||+|+.+......
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHH
Confidence 58999997321 122233443 3589999999988654433 2223333433479999999999875332221
Q ss_pred HHHhCCccccC-CCEEEEEeCChhhhhccccH
Q 007422 218 DILEGKSYRLK-FPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 218 ~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~ 248 (604)
.. .......+ .+++.+++.++.++++++..
T Consensus 109 ~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 109 RA-KELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred HH-HHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 11 11001112 26888999988887766543
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.37 E-value=3.8e-12 Score=118.89 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=62.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHH----HHhh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDA----IKIS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~----l~l~---~~r~i~VltK~ 207 (604)
.+.++||||..+. ..+...|++.+|+++++++..+... . ...+ .+.. ..|+++|+||+
T Consensus 51 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 117 (164)
T cd04145 51 ILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKA 117 (164)
T ss_pred EEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCc
Confidence 5789999997543 5567789999999999886654321 1 1111 1111 16899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+................+..|+.+++.++.++++++..+
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 118 DLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred cccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 987543211111111111234578999999988888766544
No 60
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.37 E-value=8.8e-12 Score=114.57 Aligned_cols=109 Identities=20% Similarity=0.324 Sum_probs=67.2
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH-HHh---hhcceeEEEecccCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-IKI---SRERTFGVLTKIDLM 210 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~-l~l---~~~r~i~VltK~D~~ 210 (604)
..++++|||||+....... ......+..++..+|.+++++.+.+........ ... ...++++|+||+|+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 4589999999997754321 111346677889999999887766544333321 212 228999999999998
Q ss_pred CCCCCHHHH---HhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 211 DKGTDAADI---LEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 211 ~~~~~~~~~---l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
......... ...........++.+++.++.++.++...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 118 PEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred ChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 755322211 111222334568888888777766555443
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.37 E-value=2.2e-12 Score=120.44 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~------~~r~i~VltK~D 208 (604)
.+.++||||.... ..+...+++.+|++|++++..+.... ...++... ..|+++|+||+|
T Consensus 50 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D 116 (164)
T smart00175 50 KLQIWDTAGQERF-------------RSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSD 116 (164)
T ss_pred EEEEEECCChHHH-------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 5789999995432 45677889999999999876543211 11222221 168999999999
Q ss_pred CCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 209 LMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 209 ~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+..... +.... .......+..|+.+++..+.++++++..+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 117 LEDQRQVSREEA-EAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred cccccCCCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 875322 11111 111123345688898888888877766655443
No 62
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.37 E-value=4.3e-12 Score=119.54 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=64.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HH----HHhh------hcceeEEE
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DA----IKIS------RERTFGVL 204 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~----l~l~------~~r~i~Vl 204 (604)
.+.++||||.... ..+...+++++|++|++++..+.. +... .+ +... ..|+++|+
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 50 TLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred EEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 5789999996432 456678999999999988654432 1111 11 1111 26899999
Q ss_pred ecccCCCCCCCHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHHH
Q 007422 205 TKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 205 tK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
||+|+.++.....+.........+ ..++.+++..+.++++++..+....
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 117 NKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 999998533211111111111222 5689999999888887776655443
No 63
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.37 E-value=2.9e-12 Score=119.54 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.||||||.... ..+...|++++|++++|++..+.+ +.. ..++... ..|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 116 (163)
T cd04136 50 MLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKC 116 (163)
T ss_pred EEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999997553 456678899999999988654432 111 1111111 27899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
|+.+......+.........+.+|+.++++++.++++++..+.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 117 DLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred cccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9875432111111111112336789999999888877665443
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=7.3e-12 Score=136.25 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+|+|.+|+|||||+|+|+|.+..+.+. ..+|+.+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~------------------------------------ 214 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP------------------------------------ 214 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE------------------------------------
Confidence 45789999999999999999999987532222 12233221111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
+.. +...+++|||||+.+..... ..........+..+++.+|++|+|++... ....++
T Consensus 215 ------------------~~~-~~~~~~liDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~ 272 (429)
T TIGR03594 215 ------------------FER-NGKKYLLIDTAGIRRKGKVT--EGVEKYSVLRTLKAIERADVVLLVLDATE-GITEQD 272 (429)
T ss_pred ------------------EEE-CCcEEEEEECCCccccccch--hhHHHHHHHHHHHHHHhCCEEEEEEECCC-CccHHH
Confidence 111 11268899999997643221 11222222334578999999999876554 233222
Q ss_pred --HHHhhh---cceeEEEecccCCCCCCCHHH---HHhCCccc-cCCCEEEEEeCChhhhhccccHHH
Q 007422 192 --AIKISR---ERTFGVLTKIDLMDKGTDAAD---ILEGKSYR-LKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 --~l~l~~---~r~i~VltK~D~~~~~~~~~~---~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.+..+. .+.++|+||+|+.+....... .+...... ...+++.+++.++.++++++..+.
T Consensus 273 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 273 LRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 222222 899999999999832211111 11111111 124688889988888877665544
No 65
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=6.9e-12 Score=136.41 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.|++||.+|+|||||+|+|+|...-..+. ..+||.+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~--------------------------------------- 41 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGD--------------------------------------- 41 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEE---------------------------------------
Confidence 48999999999999999999976422221 12333321111
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh-----
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT----- 189 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~----- 189 (604)
+... ...+.||||||+... ...+...+...+..+++.+|++++|+++.. ....
T Consensus 42 ---------------~~~~-~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i 99 (429)
T TIGR03594 42 ---------------AEWG-GREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVDGRE-GLTPEDEEI 99 (429)
T ss_pred ---------------EEEC-CeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHH
Confidence 1111 125899999998542 223567778888999999999988876543 2222
Q ss_pred hHHHHhhhcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHH
Q 007422 190 SDAIKISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 190 ~~~l~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
...++..+.++++|+||+|+.+......+. ..++. .++.+++..+.+++++.+.+...
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 122333348999999999987654433222 23444 47899999988888777665544
No 66
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.36 E-value=3.8e-12 Score=123.58 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|+|||++|+|||||++++.+..+ +... .+|-.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~-~~t~~------------------------------------------ 40 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSY-ITTIG------------------------------------------ 40 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-Ccccc------------------------------------------
Confidence 457999999999999999999998875 2111 11100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
+......+.+.+ ....+.||||||.... ..+...|+++++++|+|++..+... . ..
T Consensus 41 --------~~~~~~~~~~~~-~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~D~~~~~s~~~~~ 98 (199)
T cd04110 41 --------VDFKIRTVEING-ERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGESFVNVK 98 (199)
T ss_pred --------ceeEEEEEEECC-EEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEEECCCHHHHHHHH
Confidence 000000111111 1125789999996432 5667889999999999887655321 1 11
Q ss_pred HHHHhhh-----cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKISR-----ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~~-----~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++.... .+.++|.||+|+.+................+..|+.+++.++.++++++..+.....
T Consensus 99 ~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 99 RWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2232222 688999999998754321111111111233466899999999888888777655443
No 67
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=7.4e-12 Score=136.40 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
|.|++||.+|+|||||+|+|+|......+. ..+|+....-
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~--------------------------------------- 42 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYG--------------------------------------- 42 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEE---------------------------------------
Confidence 789999999999999999999986421111 1122221110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h---h
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A---T 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~---~ 189 (604)
.+.+. ...+.+|||||+.... .+....+...+..++..+|++|+|+++.+... . .
T Consensus 43 -------------~~~~~---~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~ 101 (435)
T PRK00093 43 -------------EAEWL---GREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI 101 (435)
T ss_pred -------------EEEEC---CcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 11111 1468999999997621 12556677778889999999999887654211 1 1
Q ss_pred hHHHHhhhcceeEEEecccCCCCCCCHHHHHhCCccccCCC-EEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++++....|+++|+||+|..+......+. ..++.+ ++.+++..+.++++++..+..
T Consensus 102 ~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 102 AKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred HHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 223333348999999999975432222222 233443 788999998888877765544
No 68
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=2.6e-12 Score=118.49 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=87.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+++|.++||||||+|+|.+..+.+... .++. +
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~-~t~~-~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK-STIG-V------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC-Ccee-e-------------------------------------------
Confidence 379999999999999999999988633211 1110 0
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~ 192 (604)
......+.+. .....+.++|+||.... ..+...+++++|++|++++..+.+ ... ..+
T Consensus 36 -------~~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~ 94 (159)
T cd00154 36 -------DFKSKTIEID-GKTVKLQIWDTAGQERF-------------RSITPSYYRGAHGAILVYDITNRESFENLDKW 94 (159)
T ss_pred -------eeEEEEEEEC-CEEEEEEEEecCChHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 0000011111 01136889999997432 456788999999999988765422 111 112
Q ss_pred HHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 193 IKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 193 l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
+... ..++++|+||+|+..+.....+.........+..|+.+++..+.+++++...
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 156 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQS 156 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 2221 1799999999999733221111111111124567888888887777765543
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.36 E-value=3.4e-12 Score=125.50 Aligned_cols=103 Identities=19% Similarity=0.142 Sum_probs=65.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhhh---------cceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISR---------ERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~~---------~r~i~Vlt 205 (604)
.+.||||||.... ..++..|++.+|++|+|++..+.+. .. ..++.... .++++|.|
T Consensus 51 ~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 51 TLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence 6789999995432 5677889999999999987655321 11 12222221 35889999
Q ss_pred cccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 206 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 206 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+|+..+...............+.+|+.+++.++.++++++..+...
T Consensus 118 K~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 118 KTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred CcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99997533211111111112234568899999999988887766544
No 70
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.36 E-value=5.3e-12 Score=118.11 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hHHHHhh-----hcceeEEEeccc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKIS-----RERTFGVLTKID 208 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~~l~l~-----~~r~i~VltK~D 208 (604)
..+.++||||... ...++..+++.+|+++++++..+.+.-. ..++... ..|.++|+||+|
T Consensus 52 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 118 (164)
T cd04101 52 VELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 3688999999643 2567788999999999988654432111 1222222 178999999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.+................+..|+.+++..+.++++++..+.
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 119 LADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 865432111111111122345688999988888877665543
No 71
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=8.2e-12 Score=116.64 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=62.7
Q ss_pred EeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH-Hhh-hcceeEEEecccCCCCCCC-H
Q 007422 140 LIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI-KIS-RERTFGVLTKIDLMDKGTD-A 216 (604)
Q Consensus 140 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l-~l~-~~r~i~VltK~D~~~~~~~-~ 216 (604)
+|||||...... ...+.+ ..+++.+|+++++++..+.+......+ ... ..++++|+||+|+.+...+ .
T Consensus 41 ~iDtpG~~~~~~--------~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~ 111 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAAT 111 (158)
T ss_pred cccCCccccCCH--------HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHH
Confidence 699999854311 122233 345789999999887654432222222 221 2689999999998542211 1
Q ss_pred HHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 217 ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 217 ~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.+.+. ......+++.+++++++++++++..+....
T Consensus 112 ~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 112 RKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 22221 112224799999999999998887765543
No 72
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.35 E-value=4.4e-12 Score=120.70 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=63.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-c-hhhHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~-~~~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.||||||... ...+...|++++|++|+|++..+.+ + ....++... ..|+++|.||+
T Consensus 64 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 64 HLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 578999999543 3567788999999999988765432 1 111222211 15799999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
|+.+......+.........+..|+.+++.++.++++++..+..
T Consensus 131 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 131 DLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred cchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 98754321111111111223456899999888888777665543
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.35 E-value=4.4e-12 Score=118.31 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=91.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|++++|||||+++|++..+.+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 689999999999999999998876332221111000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l 193 (604)
....+.+.+ ....+.||||||.... ..+...+++.+|++|++++..+.... ...++
T Consensus 38 --------~~~~~~~~~-~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 38 --------GSKIIRVGG-KRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITNRTSFEALPTWL 95 (161)
T ss_pred --------EEEEEEECC-EEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000011111 1135789999997442 45677889999999998876553211 11222
Q ss_pred Hhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 194 KIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 194 ~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
... ..++++|+||+|+..................+..|+.+++.++.++++++..+.
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 222 278999999999976433211111111123346799999999888877665443
No 74
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.35 E-value=3.5e-12 Score=120.62 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=93.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|++||++|+|||||++++++..| +....++...-..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~------------------------------------------ 38 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFE------------------------------------------ 38 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEE------------------------------------------
Confidence 689999999999999999999876 3222111110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l 193 (604)
...+.+.+ ....+.||||||..+. ..+...|++.+|++++|++..+.+ +. ...++
T Consensus 39 ---------~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 39 ---------MERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred ---------EEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 00111111 1136889999997543 556778999999999988665432 21 12333
Q ss_pred Hhhh-------cceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 194 KISR-------ERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 194 ~l~~-------~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
.... .++++|.||.|+.+.... ...........++..|+.+++.++.++++++..+.+...|
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3221 347899999998654221 1111111112234568899999988888877766655443
No 75
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=135.28 Aligned_cols=154 Identities=21% Similarity=0.328 Sum_probs=104.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+++|.||+|||||+|+|+|.+. -+|+ .| +++- ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgN-----wp------------------------------GvTV------Ekk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGN-----WP------------------------------GVTV------EKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecC-----CC------------------------------CeeE------EEE
Confidence 4699999999999999999999873 2221 22 1111 111
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~~ 192 (604)
.| ..... ...+++||+||+.+......+ +..+++|+. ++|+||-+|+++|-+..---.
T Consensus 42 eg------------~~~~~-~~~i~ivDLPG~YSL~~~S~D-------E~Var~~ll~~~~D~ivnVvDAtnLeRnLylt 101 (653)
T COG0370 42 EG------------KLKYK-GHEIEIVDLPGTYSLTAYSED-------EKVARDFLLEGKPDLIVNVVDATNLERNLYLT 101 (653)
T ss_pred EE------------EEEec-CceEEEEeCCCcCCCCCCCch-------HHHHHHHHhcCCCCEEEEEcccchHHHHHHHH
Confidence 12 11122 225899999999886554222 566788886 479999888888776665555
Q ss_pred HHhhh--cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 193 IKISR--ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 193 l~l~~--~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+++.. .|+++++|++|...+.....+. ......++.+.+.+++..++|+++++..+..
T Consensus 102 lQLlE~g~p~ilaLNm~D~A~~~Gi~ID~-~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 102 LQLLELGIPMILALNMIDEAKKRGIRIDI-EKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred HHHHHcCCCeEEEeccHhhHHhcCCcccH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 66655 8999999999988764322211 1113467788999999999998877765543
No 76
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.35 E-value=3.5e-12 Score=118.95 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=62.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-----hcceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-----RERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-----~~r~i~VltK~D~ 209 (604)
.+.|+||||... ...+...|++.+|++++|++..+.+ +.. ..++... ..|+++|+||+|+
T Consensus 52 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 52 RLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 688999999543 2556788999999999887654432 111 1222222 2799999999999
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
..+.....+........++.+++.+++..+.++++++..+
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 7643311111111112334578999998888877665544
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.35 E-value=6.1e-12 Score=120.24 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHh---hhcceeEEEecccCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKI---SRERTFGVLTKIDLM 210 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l---~~~r~i~VltK~D~~ 210 (604)
...++||||||..+. ...+..+++.+|++++++++.... ....+.+.. .+.++++|+||+|+.
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 347999999997542 455778888999999987654322 111222222 238999999999998
Q ss_pred CCCCC------HHHHHhCCc----------cccCCCEEEEEeCChhhhhccccHHH
Q 007422 211 DKGTD------AADILEGKS----------YRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 211 ~~~~~------~~~~l~~~~----------~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.+... ..+.+.... ......++.+++..+.++++++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 128 GEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred chhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHH
Confidence 63321 112222111 11234577788877777766555443
No 78
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.34 E-value=6.3e-12 Score=116.87 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=62.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-H----HHHhh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-D----AIKIS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~----~l~l~---~~r~i~VltK~ 207 (604)
.+.+|||||.... ..+...|++.+|+++++++..+.. +... . ..+.. ..|+++|+||+
T Consensus 50 ~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4778999996542 567778999999998887654422 1111 1 11221 27899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+..+.....+. .......+..|+.+++.++.++++++..+
T Consensus 117 Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 117 DLAARTVSSRQG-QDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred ccccceecHHHH-HHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 987643222111 11112234568999999998888766544
No 79
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.34 E-value=8.6e-12 Score=116.24 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH----Hh-----hhcceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI----KI-----SRERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l----~l-----~~~r~i~Vlt 205 (604)
.+.++||||..+. ..++..|++++|++|+|++..+.. +. ....+ .. .+.|+++|+|
T Consensus 46 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 46 SFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred EEEEEECCCCHhh-------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEe
Confidence 6889999997543 567788999999999988765432 11 11111 11 1278999999
Q ss_pred cccCCCCCC--CHHHHHhCCc-cccCCCEEEEEeCChhhhhccccHH
Q 007422 206 KIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 206 K~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+|+.+... .....+.... ......++.+++.++.++++++..+
T Consensus 113 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 113 KMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred CccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 999875432 1122221111 1112247888999998888776554
No 80
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.34 E-value=8.5e-12 Score=121.02 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=91.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|++|+|||||++++++.+| +....+++.......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccccee----------------------------------------
Confidence 689999999999999999999876 333222221110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l 193 (604)
.+.+.+ ....+.||||||....+.. ...........+++.+|++|+|++..+.+ +.. ..+.
T Consensus 41 -----------~i~~~~-~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 41 -----------AVVLSG-RVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLR 103 (198)
T ss_pred -----------EEEECC-EEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 001111 1125789999998654321 11222334556789999999998766542 111 1111
Q ss_pred ----Hh-----hhcceeEEEecccCCCCCCCHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHH
Q 007422 194 ----KI-----SRERTFGVLTKIDLMDKGTDAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 194 ----~l-----~~~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.. ...|+++|.||+|+........+.+... ....+.+|+.+++.++.++++++..+.
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 11 1268999999999965432111111111 112356899999999988887765443
No 81
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.34 E-value=5.9e-12 Score=119.67 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHh---hhcceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKI---SRERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l---~~~r~i~VltK~D~~~ 211 (604)
..+.||||||..+. ..++..+++.+|++|+|++..+.. ......+.. .+.++++|+||+|+.+
T Consensus 67 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 67 YLLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 36889999998653 456678899999999988765421 111121211 2278999999999864
Q ss_pred CCCC-HHHHHhCCccccC-CCEEEEEeCChhhhhccccHHH
Q 007422 212 KGTD-AADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 212 ~~~~-~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.... ....+.. ..... ..++.+++.++.++++++..+.
T Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 134 ADPERVKQQIED-VLGLDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred CCHHHHHHHHHH-HhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence 3211 1111111 01111 2378899998888877666544
No 82
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.33 E-value=7.2e-12 Score=117.33 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=63.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.+|||||.... ..+...|++.+|++++|++..+.. +.. .+++... ..|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 116 (164)
T cd04175 50 MLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 116 (164)
T ss_pred EEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 5789999997543 556777999999999988654322 111 1121111 17899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
|+.+...............++..|+.+++.++.++++++..+.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 117 DLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred cchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9875432111111111123345688999998888877766543
No 83
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.6e-11 Score=124.30 Aligned_cols=181 Identities=23% Similarity=0.298 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcce
Q 007422 7 LVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREY 86 (604)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~ 86 (604)
+..-++++.+-+........+ -.-++||++|.||+|||||+|+|+..+. .+++..|
T Consensus 245 ~~~l~d~v~s~l~~~~~~e~l----q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~--------------- 300 (531)
T KOG1191|consen 245 SLSLLDDVLSHLNKADEIERL----QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP--------------- 300 (531)
T ss_pred HHHHHHHHHHHHHhhhhHHHh----hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC---------------
Confidence 333344566666543322222 2458999999999999999999999887 4555444
Q ss_pred eeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHH
Q 007422 87 AEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 166 (604)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~ 166 (604)
|. +.|.|...+. ++...+.|+||.|+.....+ .++..--+..
T Consensus 301 -----------------------------GT----TRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA 342 (531)
T KOG1191|consen 301 -----------------------------GT----TRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERA 342 (531)
T ss_pred -----------------------------Cc----chhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHH
Confidence 21 1122333333 44557999999999872211 1333334556
Q ss_pred HHhhcCCCeEEEEEecCCCcchh----hHHHHhhh------------cceeEEEecccCCCCCCCHHH--HH-hCCcccc
Q 007422 167 RSYIEKPNCIILAISPANQDLAT----SDAIKISR------------ERTFGVLTKIDLMDKGTDAAD--IL-EGKSYRL 227 (604)
Q Consensus 167 ~~~i~~~d~iIl~v~~a~~d~~~----~~~l~l~~------------~r~i~VltK~D~~~~~~~~~~--~l-~~~~~~l 227 (604)
+.-++.+|+|+++|++...+.+. .+.+.... .|.|.|.||.|+..+...... +. ......-
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS 422 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc
Confidence 77889999998887663332221 22222111 789999999999887432111 10 0000011
Q ss_pred CCCEEE-EEeCChhhhhccccHH
Q 007422 228 KFPWIG-VVNRSQADINKNVDMI 249 (604)
Q Consensus 228 ~~g~~~-v~~~s~~~i~~~~~~~ 249 (604)
....+. +++.+.+++..+.+.+
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~al 445 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTAL 445 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHH
Confidence 223344 7777778777665544
No 84
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=8e-12 Score=121.50 Aligned_cols=103 Identities=14% Similarity=0.218 Sum_probs=65.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HHHH-------h---hhcceeEEE
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAIK-------I---SRERTFGVL 204 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~l~-------l---~~~r~i~Vl 204 (604)
.+.||||||.... ..+...|++++|++|+|++..+.+ +... .++. . ...|+++|.
T Consensus 51 ~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 51 RLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence 6789999997432 567788999999999988755432 1111 1111 1 126899999
Q ss_pred ecccCCCCCC-CHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHHH
Q 007422 205 TKIDLMDKGT-DAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 205 tK~D~~~~~~-~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
||+|+.+... ...++ .......+ .+|+.+++.++.++++.+..+....
T Consensus 118 NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 118 NKCDLKKRLAKDGEQM-DQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ECCCcccccccCHHHH-HHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999974221 11111 11111223 4789999999888888777665543
No 85
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=5.1e-12 Score=118.53 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=61.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~~------~r~i~VltK~D 208 (604)
.+.|+||||... ...++..+++.+|+++++++..+.. +. ...++.... .|.++|+||+|
T Consensus 53 ~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 53 KLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 688999999533 2556788999999999988765532 11 122322221 67999999999
Q ss_pred CCCCCCC-HHHHHhCCccccC-CCEEEEEeCChhhhhccccHH
Q 007422 209 LMDKGTD-AADILEGKSYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~~-~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+...... ..+... .....+ ..++.+++..+.++++.+..+
T Consensus 120 l~~~~~~~~~~~~~-~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 120 LEEQREVLFEEACT-LAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred cccccccCHHHHHH-HHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 8765321 111111 111222 357888888887777655443
No 86
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=7.1e-12 Score=122.86 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=66.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhhh-------cceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISR-------ERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~~-------~r~i~VltK~ 207 (604)
.+.++||||.... ..+...|++++|++|+|++..+.. +. ...++.... .+.++|.||+
T Consensus 53 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 53 KLQLWDTAGQERF-------------RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 5889999996432 556778999999999988765532 11 112222211 4568899999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
|+.+......+........++.+|+.+++.++.++++.+..+.....
T Consensus 120 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred ccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 98764322111111112234477999999999999888877765433
No 87
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=3.8e-11 Score=130.82 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
+.++|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~------------------------------------- 214 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT------------------------------------- 214 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE-------------------------------------
Confidence 568999999999999999999999874333322 122222111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
.+.. +...+.+|||||+.+..... ..........+..+++.+|++|+|+++.. ....++
T Consensus 215 -----------------~~~~-~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~ 273 (435)
T PRK00093 215 -----------------PFER-DGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQD 273 (435)
T ss_pred -----------------EEEE-CCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHH
Confidence 1111 22368899999996643221 11111122234568899999988876543 333332
Q ss_pred --HHHhhh---cceeEEEecccCCCCCC--CHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 --AIKISR---ERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 --~l~l~~---~r~i~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.+..+. .++++|+||+|+.++.. ...+.+... ......+++.+++.++.++++++..+.
T Consensus 274 ~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 274 LRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 223332 89999999999984321 111111111 111224678888888887776655443
No 88
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.32 E-value=1.4e-11 Score=117.86 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=88.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-+|+++|.+|||||||++++++..+... .+|..
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~-------------------------------------------- 36 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKG-------------------------------------------- 36 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccc--------------------------------------------
Confidence 4799999999999999999998765211 11110
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~ 192 (604)
+....+.+.+.......+.+|||||.... ..++..|++.+|++|++++..+.+ +... ..
T Consensus 37 ------~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~ 97 (183)
T cd04152 37 ------FNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTE 97 (183)
T ss_pred ------cceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00011111111112236889999996432 567788999999999988765532 1111 11
Q ss_pred H----Hh---hhcceeEEEecccCCCCCC--CHHHHHhCCccc--cCCCEEEEEeCChhhhhccccHHHHH
Q 007422 193 I----KI---SRERTFGVLTKIDLMDKGT--DAADILEGKSYR--LKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 193 l----~l---~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~--l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
+ .. ...|+++|+||+|+.+... +....+...... ....++.+++.+++++++++..+...
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 1 11 1278999999999864321 122222111111 11235677888888887776655433
No 89
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.32 E-value=7.9e-12 Score=121.45 Aligned_cols=103 Identities=12% Similarity=0.162 Sum_probs=66.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhhh------cceeEEEecc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISR------ERTFGVLTKI 207 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~~------~r~i~VltK~ 207 (604)
..+.+|||||..+. +.++..|++++|++|+|++..+.+ +.. ..++...+ .++++|.||+
T Consensus 49 v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 36889999997543 677889999999999988765532 111 12222222 7899999999
Q ss_pred cCCCCCCCHHHHHhCCccc-cCCCEEEEEeCChhhhhccccHHHH
Q 007422 208 DLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
|+.+............... .+..|+.+++.++.++++.+..+..
T Consensus 116 DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 116 DCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9865332111111100111 1356889999999888887765543
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.32 E-value=6.9e-12 Score=117.10 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=88.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|++|+|||||+|++++.++.+.. .+++.......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~---------------------------------------- 41 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQ---------------------------------------- 41 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEE----------------------------------------
Confidence 6899999999999999999999874311 11111100000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l 193 (604)
.+.+.. ....+.+|||||... ...+...+++.+|++|+|+++.+.+ +. ...++
T Consensus 42 -----------~v~~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 42 -----------TVNLDD-TTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV 96 (163)
T ss_pred -----------EEEECC-EEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 001111 112578999999533 2455667899999999988765432 11 11222
Q ss_pred Hhhh------cceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 194 KISR------ERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 194 ~l~~------~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.... .++++|+||+|+.+... ..... .......+..|+.+++.++.++.+++..+.
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLESKRQVSTEEA-QEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccccCcCCHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 2211 56899999999874332 22111 111122335689999998888877665543
No 91
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.32 E-value=9.6e-12 Score=117.52 Aligned_cols=106 Identities=18% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-------chhh-----HHHH---------
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-------LATS-----DAIK--------- 194 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-------~~~~-----~~l~--------- 194 (604)
..+.+|||||+.......+ .. ......+++.+|+++++++..+.+ .... +...
T Consensus 44 ~~~~i~DtpG~~~~~~~~~--~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (176)
T cd01881 44 ARIQVADIPGLIEGASEGR--GL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGL 117 (176)
T ss_pred CeEEEEeccccchhhhcCC--Cc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3689999999864322111 11 112345678899999988765542 1111 1111
Q ss_pred hhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhcccc
Q 007422 195 ISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 195 l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 247 (604)
....|+++|+||+|+.....................++.+++..+.+++++..
T Consensus 118 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 118 LTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred HhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHH
Confidence 12489999999999976543221101111112234588888887777765544
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.32 E-value=1e-11 Score=121.74 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=68.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-H-HHHhh-------hcceeEEEec
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-D-AIKIS-------RERTFGVLTK 206 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~-~l~l~-------~~r~i~VltK 206 (604)
.+.|+||||.... ..+...|++.+|++|+|++..+.+ +... + +.... ..+.++|.||
T Consensus 63 ~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK 129 (211)
T PLN03118 63 KLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129 (211)
T ss_pred EEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5789999997553 556778999999999988765532 1111 1 11111 1578999999
Q ss_pred ccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHH
Q 007422 207 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRERE 257 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ 257 (604)
+|+........+.........+..|+.+++.++.++++++..+.....+.+
T Consensus 130 ~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 130 VDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred ccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 998754321111111111123456899999999999888887766554443
No 93
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.32 E-value=1e-11 Score=119.67 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=67.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhh---------hcceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKIS---------RERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~---------~~r~i~Vlt 205 (604)
.+.||||||.... ..+...|++.+|++|+|++..+.. +. ...++... +.|+++|.|
T Consensus 48 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 48 MLEVLDTAGQEEY-------------TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred EEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 5889999996442 456778999999999988654432 11 11222211 268999999
Q ss_pred cccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 206 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 206 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
|+|+.+................+..|+.+++.++.++++++..+.....+.
T Consensus 115 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 115 KCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred ChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999865332111111111122345689999999999888877766544433
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.32 E-value=1.1e-11 Score=115.51 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+++|.+|||||||++++++..+ +.+..+++..... .
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~-~---------------------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYR-K---------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEE-E----------------------------------------
Confidence 689999999999999999998775 3322222111000 0
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hh---
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TS--- 190 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~--- 190 (604)
.. ........+.+|||||.... ..+...+++.+++++++++..+.+ +. ..
T Consensus 40 -----------~~-~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 40 -----------KV-VLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred -----------EE-EECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 01111125789999997543 456677889999998887644322 10 11
Q ss_pred -HHHHh---hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 -DAIKI---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 -~~l~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
..+.. .+.|+++|+||+|+.+...............++.+++.+++.++.++++++..+.
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 11222 1289999999999976322111111111123446789999999988887766544
No 95
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.31 E-value=9.8e-12 Score=112.05 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=60.8
Q ss_pred EeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhhcceeEEEecccCCCCCCCH--
Q 007422 140 LIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISRERTFGVLTKIDLMDKGTDA-- 216 (604)
Q Consensus 140 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~~r~i~VltK~D~~~~~~~~-- 216 (604)
+|||||=.--. ..+.........++|.|+++.++.... .-..........|+|||+||+|+.....+.
T Consensus 40 ~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~ 110 (143)
T PF10662_consen 40 TIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIER 110 (143)
T ss_pred EEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHH
Confidence 59999964321 112333345556899998876554432 233444555669999999999998443333
Q ss_pred -HHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 217 -ADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 217 -~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.+.|..... .+.|.|+..++++++++.+++
T Consensus 111 a~~~L~~aG~---~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 111 AKKWLKNAGV---KEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHcCC---CCeEEEECCCCcCHHHHHHHH
Confidence 233332111 245889998988888776654
No 96
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.31 E-value=1e-11 Score=116.55 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=62.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh---------hcceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS---------RERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~---------~~r~i~Vlt 205 (604)
.+.++||||.... ..+...+++.+|++|+|++..+... . ...++... ..|+++|.|
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 50 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 6889999998653 4456678889999988876554321 1 11222111 168999999
Q ss_pred cccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 206 KIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 206 K~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
|+|+...... ..+. .......+.+|+.+++.++.++++++..+.
T Consensus 117 K~Dl~~~~~v~~~~~-~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 117 KCDESHKREVSSNEG-AACATEWNCAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred CccccccCeecHHHH-HHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Confidence 9998653221 1111 101122346789999999988887766543
No 97
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.31 E-value=1.5e-11 Score=119.16 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
..|+|+|.+|+|||||+|+|+|...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~ 26 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH 26 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999999764
No 98
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=3.5e-11 Score=124.05 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
.+.|+|++||=+|||||||+|+|+|...+-.+.-..|=.|+.=+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~------------------------------------ 233 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR------------------------------------ 233 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE------------------------------------
Confidence 58999999999999999999999999874455445665554433
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh-
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~- 190 (604)
+.-++...+.|-||=|+++. =|+.+.+..+.. ..-..++|.+++||+.++.++..+
T Consensus 234 ------------------~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 234 ------------------IELGDGRKVLLTDTVGFIRD----LPHPLVEAFKST-LEEVKEADLLLHVVDASDPEILEKL 290 (411)
T ss_pred ------------------EEeCCCceEEEecCccCccc----CChHHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHH
Confidence 22222346899999999873 344466555543 455778999999988777654332
Q ss_pred ----HHHHhhh---cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 ----DAIKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ----~~l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
+.|.... .|+|.|+||+|++........+-.+ . . ..+.+++.++.+++.+...+.....
T Consensus 291 ~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~-~---~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 291 EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG-S---P-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-C---C-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 2232222 7999999999998765411111111 1 1 4788999998888877776655444
No 99
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=1.2e-11 Score=118.79 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=65.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~~------~r~i~VltK~D 208 (604)
.+.++||||.... ..+...+++++|++|++++..+.+. . ...++.... .+.++|.||.|
T Consensus 50 ~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 50 KLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 5789999996432 4567889999999999987654321 1 112222221 67899999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+.+................+..|+.+++.++.++++++..+....
T Consensus 117 l~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 117 LVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 875432111111111112344699999999999888777665543
No 100
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.30 E-value=1e-11 Score=116.05 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=61.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHh-------hhcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKI-------SRERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l-------~~~r~i~VltK~ 207 (604)
.+.|+||||..+. ..+...|++++|++|+|++..+.. +. ...++.. ...|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999997543 445677899999999988655432 11 1122111 127899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+................+.+|+.++++++.++++++..+
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred cchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 986533211111111111234578888998888887766544
No 101
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=2.1e-11 Score=140.16 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.+|.|++||.+|+|||||+|+|+|.... ++...|.+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~-----iv~~~pGvT~------------------------------------- 311 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREA-----VVEDTPGVTR------------------------------------- 311 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCce-----eecCCCCeeE-------------------------------------
Confidence 5689999999999999999999997641 1111221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
+.+....... ...+.+|||||+.... +.+...+...+..+++.+|++|+|++..+.- .....
T Consensus 312 -----------d~~~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~ 374 (712)
T PRK09518 312 -----------DRVSYDAEWA-GTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDER 374 (712)
T ss_pred -----------EEEEEEEEEC-CEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH
Confidence 1111111111 2268899999986421 2366677788888999999999988754321 11122
Q ss_pred HHHh---hhcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKI---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+... .+.|+|+|+||+|+........+.. .++. ..+.+++..+.++++++..+....
T Consensus 375 i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 375 IVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 3233 3399999999999865432222221 1222 246799999999998887766544
No 102
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.30 E-value=2.1e-11 Score=112.57 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=60.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--HHH-Hh------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAI-KI------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~--~~l-~l------~~~r~i~VltK 206 (604)
..+.++||||.... +.++..|++.+|+++++++..+.+.-.. ..+ .+ ...|+++|+||
T Consensus 44 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 44 VTLKVWDLGGQPRF-------------RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 36889999996432 5667889999999998876544321111 111 11 12689999999
Q ss_pred ccCCCCCCCHHHHHhC---C-ccccCCCEEEEEeCChhhhhccccHH
Q 007422 207 IDLMDKGTDAADILEG---K-SYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~---~-~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+|+.+... ...+... . .......++.++++++.++++++..+
T Consensus 111 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 111 NDLPGALS-VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred ccccCCcC-HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 99876432 2122111 1 11122457888888888777655443
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.30 E-value=1.9e-11 Score=115.79 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+++|.++||||||+++|+|..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 457999999999999999999998753 11 0110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.++... .+.+ +...+.++||||.... ..++..|++.+|++++|++..+.+ +.. .
T Consensus 46 ------~g~~~~--~~~~---~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 46 ------LGFQIK--TLEY---EGYKLNIWDVGGQKTL-------------RPYWRNYFESTDALIWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------cccceE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 000000 0111 1236899999997542 556788999999999988765542 111 1
Q ss_pred HHH----Hh---hhcceeEEEecccCCCCCC--CHHHHHhCCc-cccCCCEEEEEeCChhhhhccccH
Q 007422 191 DAI----KI---SRERTFGVLTKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 191 ~~l----~l---~~~r~i~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
..+ .. ...|+++|+||+|+..... +..+.+.... ......|+.+++.++.++++++..
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 111 11 1279999999999875432 1222221111 122346899999988888776544
No 104
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.29 E-value=2e-11 Score=115.65 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=91.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
..|+|+|++|+|||||++.+.+..| |....+++..- .
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~~--~---------------------------------------- 39 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIEDA--Y---------------------------------------- 39 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccce--E----------------------------------------
Confidence 3799999999999999999998876 32211111000 0
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~ 192 (604)
...+.+.+ ....+.|+||||.... ..+...|++.+|++|+|++..+.+ +.. .++
T Consensus 40 ----------~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~ 95 (172)
T cd04141 40 ----------KQQARIDN-EPALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEF 95 (172)
T ss_pred ----------EEEEEECC-EEEEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHH
Confidence 00111111 1126889999997543 667788999999999998765532 111 111
Q ss_pred ---HHhh----hcceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 193 ---IKIS----RERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 193 ---l~l~----~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+... ..|+++|.||+|+.+... ...+.. ......+..|+.+++..+.++++.+..+..
T Consensus 96 ~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 96 KKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred HHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 1111 178999999999865322 111111 011123467899999998888887766554
No 105
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.29 E-value=3.9e-11 Score=120.04 Aligned_cols=124 Identities=20% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...+|+|+|.+|+|||||+|+|+|....+++.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 567999999999999999999999886555432 2333332211
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecC--CCcc
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPA--NQDL 187 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a--~~d~ 187 (604)
.. .+...+++|||||+......+ .....+.+.+..|+. ..++++++.... ..+.
T Consensus 74 ------------------~~-~~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~ 131 (249)
T cd01853 74 ------------------GT-VDGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDY 131 (249)
T ss_pred ------------------EE-ECCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCH
Confidence 00 112368999999998653211 133445556677886 467666654222 1122
Q ss_pred hhhHHHHhhh--------cceeEEEecccCCCCCC
Q 007422 188 ATSDAIKISR--------ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 188 ~~~~~l~l~~--------~r~i~VltK~D~~~~~~ 214 (604)
.....++... .++++|+||+|...+..
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 2223333222 68999999999986654
No 106
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.29 E-value=1.2e-11 Score=116.83 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=59.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhhh-------cceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISR-------ERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~~-------~r~i~VltK~ 207 (604)
.+.+|||||..... ..+...|++++|++|+|++..+.+ +. ...++..+. .|+++|.||+
T Consensus 52 ~~~i~Dt~G~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 52 KVQLWDTAGQERFR------------KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred EEEEEeCCChHHHH------------HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 68899999964321 245678899999999988776532 11 122322221 7899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCC---hhhhhcccc
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRS---QADINKNVD 247 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s---~~~i~~~~~ 247 (604)
|+........+...........+|+.+++.+ ..++.+.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 120 DLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred cchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH
Confidence 9875432111111111122346799999887 455554443
No 107
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.28 E-value=2.6e-11 Score=113.72 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=62.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHH-h------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIK-I------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~-l------~~~r~i~VltK 206 (604)
..+.++||||.... ..++..+++.+|++++|++..+.+. . ....+. + .+.|+++|+||
T Consensus 50 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 50 ARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEc
Confidence 47899999997542 5567788999999999887654321 1 111111 1 12799999999
Q ss_pred ccCCCCCC--CHHHHHhCCc---cccCCCEEEEEeCChhhhhccccHH
Q 007422 207 IDLMDKGT--DAADILEGKS---YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 207 ~D~~~~~~--~~~~~l~~~~---~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+|+.+... ...+.+.... ......++.+++.++.++++.+..+
T Consensus 117 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 117 QDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred cccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 99865432 1222222111 1112358888998888887665443
No 108
>PTZ00369 Ras-like protein; Provisional
Probab=99.28 E-value=2.4e-11 Score=117.00 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=62.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHh----h---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKI----S---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l----~---~~r~i~VltK~ 207 (604)
.+.+|||||.... ..++..|++.+|++|+|++..+.+. . ...+... . ..|+++|.||+
T Consensus 54 ~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 54 LLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5779999997653 5567789999999999887655431 1 1122111 1 15899999999
Q ss_pred cCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 208 DLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 208 D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
|+.+... ..... .......+..|+.+++.++.++++++..+..
T Consensus 121 Dl~~~~~i~~~~~-~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 121 DLDSERQVSTGEG-QELAKSFGIPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred ccccccccCHHHH-HHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9854321 11111 1011123456888888888888776665543
No 109
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.28 E-value=2.6e-11 Score=113.07 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=60.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.++||||.... ..+...+++.+|+++++++..+... .. ..++... ..+.++|+||+
T Consensus 50 ~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 50 KLAIWDTAGQERF-------------RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEECCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 6889999996442 4455778899999999887544221 11 1122211 16789999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
|+........+... .....+..|+.+++..+.++++++..
T Consensus 117 D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 117 DKENREVTREEGLK-FARKHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred cccccccCHHHHHH-HHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 99744433322221 11123456888998888877765543
No 110
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.27 E-value=1.8e-11 Score=114.60 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=63.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh-----hcceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS-----RERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~-----~~r~i~VltK~D~ 209 (604)
.+.+|||||.... ..++..|++++|++|+|++..+... . ...++... ..|+++|+||+|+
T Consensus 50 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 50 LVDFWDTAGQERF-------------QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 5789999996542 5677889999999999887654321 1 12233222 2789999999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..... .+.. ......+..++.+++.++.++++++..+..
T Consensus 117 ~~~~~--~~~~-~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 117 DPSVT--QKKF-NFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred chhHH--HHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 43211 1111 011122356888998888888877665543
No 111
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=6.9e-11 Score=135.87 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=92.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCC-cccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL-PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~l-P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
+.|+|+++|.+|+|||||+|+|+|.++. +.....+|+-+....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~------------------------------------ 492 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEI------------------------------------ 492 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeE------------------------------------
Confidence 5689999999999999999999998752 222223333321111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHH-HHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN-MVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~-~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
+.+ +..++.||||||+.+..... ...+.... ....+++.+|++++|++.... ...+
T Consensus 493 ----------------~~~---~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~-~s~~ 549 (712)
T PRK09518 493 ----------------VEI---DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQP-ISEQ 549 (712)
T ss_pred ----------------EEE---CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCC-CCHH
Confidence 111 12357899999986532211 01122222 235678999999988765432 2222
Q ss_pred H--HHHhh---hcceeEEEecccCCCCCC--CHHHHHhCCcccc-CCCEEEEEeCChhhhhccccHHHH
Q 007422 191 D--AIKIS---RERTFGVLTKIDLMDKGT--DAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~--~l~l~---~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+ .+... ..++++|+||+|+.+... ...+.+....... ....+.+++.++.++++++..+..
T Consensus 550 ~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 550 DLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred HHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 2 22222 389999999999986432 1111111110011 124577888888887776665443
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.27 E-value=2.6e-11 Score=113.99 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..+.|+|+|.+|+|||||++++++..+.|. .+++ +.....-
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~------------------------------------- 47 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIK------------------------------------- 47 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEE-------------------------------------
Confidence 468999999999999999999997665332 2111 0000000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--h
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--T 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~ 189 (604)
.+.+. .....+.++||||.... ......|++.+|+++++++..+.+.. .
T Consensus 48 ---------------~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 98 (169)
T cd04114 48 ---------------TVEIK-GEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCL 98 (169)
T ss_pred ---------------EEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 01111 11125789999996442 44557789999999998876543211 1
Q ss_pred hHHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 190 SDAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 190 ~~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
..++... +.+.++|.||+|+.++..................++.+++.++.++++++..+.
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 1222221 167899999999875433211111111111224577888888877776665543
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.27 E-value=4e-11 Score=113.18 Aligned_cols=108 Identities=13% Similarity=0.241 Sum_probs=66.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHH-Hhh------hcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAI-KIS------RERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l-~l~------~~r~i~VltK 206 (604)
..+.++||||.... ..++..|++.+|++|+|++..+.. +.. ..++ ... ..|+++|.||
T Consensus 43 ~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 43 LKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred EEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 36889999997543 456778999999999988765532 111 1111 111 1689999999
Q ss_pred ccCCCCCC--CHHHHHhCCcccc--CCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 207 IDLMDKGT--DAADILEGKSYRL--KFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 207 ~D~~~~~~--~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.|+.+..+ +....+....... ...++.++++++.++++++..+.....+.
T Consensus 110 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 110 QDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 99865422 1222221111111 12356778899999988888776554444
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.27 E-value=2.3e-11 Score=112.76 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=88.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|+++||||||++++++..+ +....+++..+....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~---------------------------------------- 39 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKT---------------------------------------- 39 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEEE----------------------------------------
Confidence 489999999999999999998774 333333222110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHH-
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDA- 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~- 192 (604)
..+. .....+.++|+||.... ..+...+++.+|+++++++..+.+.. ...+
T Consensus 40 ------------~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 40 ------------IVVD-GETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYR 93 (160)
T ss_pred ------------EEEC-CEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0010 01125789999997542 55567788999999998866553211 1111
Q ss_pred ---HHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 193 ---IKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 193 ---l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+... ..|+++|+||+|+.+......+.........+.+|+.+++..+.++++++..+
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Confidence 1111 28899999999998633211111111112233678899998888877666544
No 115
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6.4e-12 Score=116.10 Aligned_cols=158 Identities=23% Similarity=0.259 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....||++|++|+||+|||+...-..| -+..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y------------------------------------------------ 51 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY------------------------------------------------ 51 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccc------------------------------------------------
Confidence 557899999999999999999987665 1111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~ 190 (604)
+.+-++....-...+.+. ...|.||||.|-.++ +.++-+|++++.++|+|.+-.+. -..+.
T Consensus 52 ---qATIGiDFlskt~~l~d~-~vrLQlWDTAGQERF-------------rslipsY~Rds~vaviVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 52 ---QATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDITDRNSFENTS 114 (221)
T ss_pred ---cceeeeEEEEEEEEEcCc-EEEEEEEecccHHHH-------------hhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence 111111111111122222 236899999997665 88999999999999888754443 34556
Q ss_pred HHHHhhh-------cceeEEEecccCCCCCCCHHHHHhCC--ccccCCCEEEEEeCChhhhhccccHHHHHHHHHHH
Q 007422 191 DAIKISR-------ERTFGVLTKIDLMDKGTDAADILEGK--SYRLKFPWIGVVNRSQADINKNVDMIAARRREREY 258 (604)
Q Consensus 191 ~~l~l~~-------~r~i~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~f 258 (604)
.|+..++ ..+++|.||.|+.++..- ...+|. ...++.-|+.+++..+.++..++..+++..++.+-
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 6766655 456678999999987531 111222 23444568999999999998887777666555433
No 116
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=9.9e-12 Score=121.57 Aligned_cols=122 Identities=24% Similarity=0.341 Sum_probs=83.1
Q ss_pred CCCeEE-EEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIA-VVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~Iv-VvG~~saGKSSLlnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
.-|..+ ++|.+|+|||||+|||++...-|++ .+.||+.++..+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~---------------------------------- 82 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL---------------------------------- 82 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh----------------------------------
Confidence 456665 8999999999999999976665665 3456655533220
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
+.+..+|+||||||+.+... -...++..++.|+.+.|.++++....+.++.+.
T Consensus 83 ---------------------~~~~~~l~lwDtPG~gdg~~------~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d 135 (296)
T COG3596 83 ---------------------SYDGENLVLWDTPGLGDGKD------KDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD 135 (296)
T ss_pred ---------------------hccccceEEecCCCcccchh------hhHHHHHHHHHHhhhccEEEEeccCCCccccCC
Confidence 11123799999999977433 234568889999999997766554444444443
Q ss_pred H-HHHh-----hhcceeEEEecccCCCCCCC
Q 007422 191 D-AIKI-----SRERTFGVLTKIDLMDKGTD 215 (604)
Q Consensus 191 ~-~l~l-----~~~r~i~VltK~D~~~~~~~ 215 (604)
. .++. .+.|+++|+|.+|...++.+
T Consensus 136 ~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~ 166 (296)
T COG3596 136 EDFLRDVIILGLDKRVLFVVTQADRAEPGRE 166 (296)
T ss_pred HHHHHHHHHhccCceeEEEEehhhhhccccc
Confidence 2 2221 22999999999999887643
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.26 E-value=5.4e-11 Score=110.75 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=60.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHH-Hh------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAI-KI------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l-~l------~~~r~i~VltK 206 (604)
..+.++||||.... ..++..+++.+|++|+|++..+.. +.. ...+ .. .+.|+++|+||
T Consensus 44 ~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (160)
T cd04156 44 LSLTVWDVGGQEKM-------------RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANK 110 (160)
T ss_pred eEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 46899999997542 556678899999999988665432 111 1111 11 22789999999
Q ss_pred ccCCCCCC--CHHHHHhCCcccc--CCCEEEEEeCChhhhhccccHH
Q 007422 207 IDLMDKGT--DAADILEGKSYRL--KFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 207 ~D~~~~~~--~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+|+.+... +....+....... ...++.+++.++.++++++..+
T Consensus 111 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 111 QDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred cccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 99864321 1111211111111 2246777888888887665543
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=2.6e-11 Score=117.65 Aligned_cols=110 Identities=11% Similarity=0.159 Sum_probs=67.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-H----HHHhh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-D----AIKIS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~----~l~l~---~~r~i~VltK~ 207 (604)
.+.|+||||.... ..+...|+..+|++|+|++..+.+ +... . ..... ..|+++|+||+
T Consensus 48 ~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 114 (198)
T cd04147 48 TLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKA 114 (198)
T ss_pred EEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcc
Confidence 6789999997653 345567899999999988654421 1111 1 11111 27899999999
Q ss_pred cCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHh
Q 007422 208 DLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYF 259 (604)
Q Consensus 208 D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff 259 (604)
|+...... .....+......+.+|+.+++.++.++++++..+........++
T Consensus 115 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 168 (198)
T cd04147 115 DSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNL 168 (198)
T ss_pred ccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhccccc
Confidence 98753211 11111111112335688899999988888887766554443343
No 119
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=1.8e-11 Score=121.94 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.--++++||.||+|||||||+|+|.+--+-+...+|..|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~----------------------------------------- 100 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP----------------------------------------- 100 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc-----------------------------------------
Confidence 556999999999999999999999886444555555444
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a 183 (604)
++| +...+..+++++|+||+...+..+... ...+.+.+++||+||+|++..
T Consensus 101 -VPG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 101 -VPG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDVF 151 (365)
T ss_pred -ccc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEecC
Confidence 233 222334589999999998876654321 233567789999998877543
No 120
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=2.6e-11 Score=114.01 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~l~l~~-----~r~i~VltK~D 208 (604)
.+.+|||||.... ...+..+++.+|++++|++..+.+ +.. ..+....+ .|+++|+||+|
T Consensus 48 ~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 48 PTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred EEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 6889999997542 344567789999998887654432 111 11222222 78999999999
Q ss_pred CCCCCCC--HHHHHhCC--ccccCCCEEEEEeCChhhhhccccHH
Q 007422 209 LMDKGTD--AADILEGK--SYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~~--~~~~l~~~--~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+.... ..+.+... ......+|+.+++.++.++++++..+
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 9765431 11111000 01111257788887777776655543
No 121
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.26 E-value=7.2e-11 Score=119.81 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
.+.++|+|+|.+|+||||++|+|+|.+....+.- .+|..|+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------------------------- 80 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------------------------- 80 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-----------------------------------
Confidence 4778999999999999999999999875332211 1222221111
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEe--cCCCc
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAIS--PANQD 186 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~--~a~~d 186 (604)
. ..+...+++|||||+.+.. ...+...+.++.|+. .+|++++|.. ....+
T Consensus 81 -------------------~-~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~ 134 (313)
T TIGR00991 81 -------------------R-TRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVD 134 (313)
T ss_pred -------------------E-EECCeEEEEEECCCCCchH------HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCC
Confidence 0 0112368999999998642 133344555666664 5888877742 12222
Q ss_pred chhhHHHHhhh--------cceeEEEecccCCCCC
Q 007422 187 LATSDAIKISR--------ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 187 ~~~~~~l~l~~--------~r~i~VltK~D~~~~~ 213 (604)
......++... .++|+|+|+.|..+++
T Consensus 135 ~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 135 TLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 12222333222 8899999999988643
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.26 E-value=7.9e-11 Score=112.87 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.-+.|+++|.+|||||||+|+++|..+-. ..+|..|+...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~------------------------------------- 55 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEE------------------------------------- 55 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEE-------------------------------------
Confidence 45899999999999999999999976511 11232221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
+.+ +...+.++||||.... +.+...|++++|++|+|++..+.+ +...
T Consensus 56 ---------------~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 56 ---------------LAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred ---------------EEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 111 1236889999997542 566788999999999998765542 1111
Q ss_pred -HHHHh------hhcceeEEEecccCCCCCC--CHHHHHhCCccc--------cCCCEEEEEeCChhhhhccccHHH
Q 007422 191 -DAIKI------SRERTFGVLTKIDLMDKGT--DAADILEGKSYR--------LKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 -~~l~l------~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~--------l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
....+ ...|+++|+||.|+...-. +..+.+.-.... ....++.+++.++.++++.+.++.
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 11111 2278999999999854221 122222111100 112367778888888777766553
No 123
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.25 E-value=3.9e-11 Score=111.51 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=61.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~------~~r~i~VltK~D 208 (604)
.+.++||||.... ..+...+++.+|+++++++..+.+.. ...++... ..++++|+||+|
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQERY-------------HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEEEECCchHHH-------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 5889999995432 45566788899999998876543321 11111111 168999999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+........+.........+..++.++++++.+++++...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 875432111111111122345678889888888877666543
No 124
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.25 E-value=3.8e-11 Score=115.79 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=64.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.+|||||.... ..+...|++++|++++|++..+.. +.. ..++.... .|+++|.||+|+
T Consensus 51 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 51 TLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 4779999997542 445667889999999988654432 111 12333222 689999999998
Q ss_pred CCCCCC-----HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 210 MDKGTD-----AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 210 ~~~~~~-----~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.+.... ..++ .......+..|+.+++.++.++++++..+....
T Consensus 118 ~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 118 IEQDRSLRQVDFHDV-QDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cccccccCccCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 653211 1111 111112335688999999888888877766544
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.25 E-value=7.9e-11 Score=113.20 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+++|.+|||||||+++|.+..+.+ ..+|..|...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~-------------------------------------- 56 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSE-------------------------------------- 56 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceE--------------------------------------
Confidence 56899999999999999999999876411 1123222110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
.+.+. ...+.++||||.... +.++..|++.+|++++|++..+... . ..
T Consensus 57 --------------~i~~~---~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~ 106 (190)
T cd00879 57 --------------ELTIG---NIKFKTFDLGGHEQA-------------RRLWKDYFPEVDGIVFLVDAADPERFQESK 106 (190)
T ss_pred --------------EEEEC---CEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHH
Confidence 11111 125789999996432 4567889999999999887654321 1 11
Q ss_pred HH----HHh---hhcceeEEEecccCCCCCC--CHHHHHhCCcc------------ccCCCEEEEEeCChhhhhccccHH
Q 007422 191 DA----IKI---SRERTFGVLTKIDLMDKGT--DAADILEGKSY------------RLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~----l~l---~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~------------~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.. +.. .+.|+++|+||+|+..... +..+.+..... .....|+.+++.+++++++.+..+
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 11 111 1289999999999864322 12222221110 112347888998888888777655
Q ss_pred H
Q 007422 250 A 250 (604)
Q Consensus 250 ~ 250 (604)
.
T Consensus 187 ~ 187 (190)
T cd00879 187 S 187 (190)
T ss_pred H
Confidence 3
No 126
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.24 E-value=4e-11 Score=112.92 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=61.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHH----hh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIK----IS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~----l~---~~r~i~VltK~ 207 (604)
.+.+|||||..+. ..+...+++.++.++++++..+.+ +. ...+.. .. +.|+++|.||.
T Consensus 50 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 116 (168)
T cd04177 50 DLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKA 116 (168)
T ss_pred EEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence 6789999997653 556778889999998887655432 11 111111 11 27889999999
Q ss_pred cCCCCCCCHHHHHhCCccccC-CCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+......+.........+ .+|+.+++.++.++++.+..+
T Consensus 117 D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 117 DLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred hccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 987543211111111111223 568999999888887655544
No 127
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.24 E-value=3.7e-11 Score=115.55 Aligned_cols=104 Identities=20% Similarity=0.156 Sum_probs=68.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.||||||.... ..++..|++.+|++|||++..+.. +.. ..++.... .|+|+|.||.|+
T Consensus 56 ~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 56 KLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred EEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 6889999997543 567788999999999998665432 111 12332222 789999999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
........+..+......+..|+.+++.++.++++.+..+....
T Consensus 123 ~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred hhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 65322111111111122346799999999999998887766433
No 128
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.24 E-value=3.9e-11 Score=113.03 Aligned_cols=150 Identities=13% Similarity=0.216 Sum_probs=87.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++++|||||++++++..+.+......+ . ...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~-~~~------------------------------------- 43 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--V-EFL------------------------------------- 43 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--e-EEE-------------------------------------
Confidence 356899999999999999999998876332211000 0 000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
...+.+. .....+.||||||... ...+...|++.+|++|++++..+.+ +.. .
T Consensus 44 ------------~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 44 ------------NKDLEVD-GHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred ------------EEEEEEC-CeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 0001111 1122578999999643 2567788999999998887554432 111 1
Q ss_pred HHH----Hhh------hcceeEEEecccCCCCCCCHHHHHhCCccccC-CCEEEEEeCChhhhhccccHH
Q 007422 191 DAI----KIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l----~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.+. ... ..|+++|.||+|+........+..+ .....+ ..|+.+++.++.++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA-WCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH-HHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 121 111 1588999999998643222211111 111222 368899998888877665543
No 129
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=2.7e-11 Score=119.47 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=67.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.+|||||.... ..+...|++.+|++|+|++..+.+. . ...++.... .++++|.||+|+
T Consensus 63 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 63 RFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhh
Confidence 6889999997553 4566789999999999887655421 1 112332222 789999999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.+.......+ . .....+..|+.+++.++.++++.+..+....
T Consensus 130 ~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 130 KNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred hhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 6432211111 1 1112345789999999999988887765544
No 130
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.24 E-value=7e-11 Score=110.01 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=62.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch--hhHHHHh------hhcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDAIKI------SRERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~--~~~~l~l------~~~r~i~VltK~ 207 (604)
.+.+|||||.... ..++..|++.+|++|+|++..+.. +. ......+ .+.|+++|+||+
T Consensus 44 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 44 KFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred EEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCC
Confidence 6889999998543 567788999999999988655432 11 1112111 137999999999
Q ss_pred cCCCCCCCHHHHHh--CCcc--ccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILE--GKSY--RLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~--~~~~--~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+... ..++.. +... .....++.+++.++.++++++..+
T Consensus 111 Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 111 DMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 9865431 122211 1111 112248888988888887766543
No 131
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.24 E-value=3.4e-11 Score=112.66 Aligned_cols=148 Identities=11% Similarity=0.141 Sum_probs=88.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|++++|||||++.+++..+.|... +|..+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~------------------------------------------ 37 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVDF------------------------------------------ 37 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeEE------------------------------------------
Confidence 58999999999999999999887633221 1111100
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l 193 (604)
....+.+.+ ....+.++||||.... ..+...|++.+|++++|++..+.. +. ...++
T Consensus 38 --------~~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~ 95 (161)
T cd04117 38 --------KMKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVYDISSERSYQHIMKWV 95 (161)
T ss_pred --------EEEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHH
Confidence 000111111 1125789999996442 456778899999999988655432 11 11222
Q ss_pred Hh----h--hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 194 KI----S--RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 194 ~l----~--~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.. . ..++++|.||.|+........+.........+.+|+.+++.++.++++++..+
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 21 1 16789999999986543211111111112344679999999888887766544
No 132
>PLN03110 Rab GTPase; Provisional
Probab=99.24 E-value=3.8e-11 Score=118.18 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
...|+|||++++|||||+++|++..+ +.... .|- .+.+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~-~t~---g~~~------------------------------------- 49 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESK-STI---GVEF------------------------------------- 49 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Cce---eEEE-------------------------------------
Confidence 45899999999999999999999875 22111 110 0000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~ 191 (604)
....+.+.+ ....+.||||||... ...+...|++.++++|+|++..+... . ...
T Consensus 50 ----------~~~~v~~~~-~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 50 ----------ATRTLQVEG-KTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred ----------EEEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 000111111 123688999999543 25677889999999988876544321 1 122
Q ss_pred HHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++...+ .++++|.||+|+........+.........+.+|+.+++.++.++++++..+....
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333222 67899999999864332111111111123356788898888888877766654433
No 133
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.23 E-value=2.3e-11 Score=114.40 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=57.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h--hhHHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A--TSDAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~--~~~~l~l~~-----~r~i~VltK~D 208 (604)
.+.+|||||.... ......+++.+|+++++++..+... . ...++.... .|+++|+||+|
T Consensus 49 ~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (171)
T cd00157 49 NLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID 115 (171)
T ss_pred EEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence 5889999997653 1223356688999999887655221 1 111222211 88999999999
Q ss_pred CCCCCCCHH-----------HHHhCCccccCC-CEEEEEeCChhhhhccccH
Q 007422 209 LMDKGTDAA-----------DILEGKSYRLKF-PWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 209 ~~~~~~~~~-----------~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 248 (604)
+.+...... +.........+. .|+.+++..+.++++++..
T Consensus 116 l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (171)
T cd00157 116 LRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEE 167 (171)
T ss_pred hhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHH
Confidence 876543210 000001111222 5777777777776665543
No 134
>PLN03108 Rab family protein; Provisional
Probab=99.23 E-value=4.9e-11 Score=116.86 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
...|+|+|++++|||||++.|++..+-|....... . .
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~---~-------------------------------------- 42 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--V---E-------------------------------------- 42 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--c---e--------------------------------------
Confidence 46899999999999999999999876332211000 0 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~ 191 (604)
+ ..-.+.+.+.. ..+.+|||||.... ..+...|++.+|++|+|++..+..... ..
T Consensus 43 -------~--~~~~i~~~~~~-i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 43 -------F--GARMITIDNKP-IKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred -------E--EEEEEEECCEE-EEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 0 00011111111 25789999996432 456778899999999988765533111 12
Q ss_pred HHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
++... ..|+++|.||+|+........+.........+..|+.+++.++.++++.+..+.
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 22211 178999999999875432111111111112345689999998888887665444
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.23 E-value=5.9e-11 Score=111.83 Aligned_cols=65 Identities=12% Similarity=0.267 Sum_probs=45.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHh-------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKI-------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l-------~~~r~i~VltK 206 (604)
..+.++||||... .+.++..|++++|++|+|++..+.+ +.. ...+.. ...|+++|+||
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK 109 (167)
T cd04161 43 YEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANK 109 (167)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeC
Confidence 3688999999643 2667889999999999998766543 111 122221 12789999999
Q ss_pred ccCCCCC
Q 007422 207 IDLMDKG 213 (604)
Q Consensus 207 ~D~~~~~ 213 (604)
.|+.+..
T Consensus 110 ~Dl~~~~ 116 (167)
T cd04161 110 QDKKNAL 116 (167)
T ss_pred CCCcCCC
Confidence 9986543
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.22 E-value=6.7e-11 Score=109.97 Aligned_cols=99 Identities=15% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHH-h------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIK-I------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~-l------~~~r~i~VltK 206 (604)
..+.+|||||.... ..+...++..+|++++|+++.+.+ +.. ...+. . ...|+++|+||
T Consensus 43 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 43 VSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 36899999997542 556778899999999988776542 111 11111 1 12799999999
Q ss_pred ccCCCCCCCHHHHHhCCc----cccCCCEEEEEeCChhhhhccccH
Q 007422 207 IDLMDKGTDAADILEGKS----YRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
+|+..... ..++..... ......++.+++.++.++++.+..
T Consensus 110 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 110 QDLPGALS-VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred cCCccccC-HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99876432 222221111 122346888888888877765543
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.22 E-value=6.3e-11 Score=112.39 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+++|.+|+|||||+++|++..+.+. .+|-.+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~---~~t~~~~~---------------------------------------- 51 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGSNV---------------------------------------- 51 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc---CCccccce----------------------------------------
Confidence 46899999999999999999987765211 11110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~ 191 (604)
..+.+ +...+.++||||.... ..++..|++.+|++|+|++..+.+ +.. ..
T Consensus 52 ------------~~~~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~ 103 (174)
T cd04153 52 ------------EEIVY---KNIRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVIDSTDRERLPLTKE 103 (174)
T ss_pred ------------EEEEE---CCeEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 00111 1236889999997542 556678899999999988765432 111 11
Q ss_pred -HHHh------hhcceeEEEecccCCCCCC--CHHHHHhCCc-cccCCCEEEEEeCChhhhhccccHH
Q 007422 192 -AIKI------SRERTFGVLTKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 192 -~l~l------~~~r~i~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.... ...|+++|+||+|+.+... +..+.+.... ...+..++.+++.++.++++.+..+
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 1111 1278999999999865321 1122221111 1122357888888888887766544
No 138
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=7.1e-11 Score=112.44 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+++|.+|+|||||++++++..+ +....+++.....-.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~---------------------------------------- 41 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKI---------------------------------------- 41 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEE----------------------------------------
Confidence 689999999999999999998764 332222221110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hH--
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SD-- 191 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~-- 191 (604)
+.+. .....+.+|||||..+. ..+...+...+++++++++..+... .. ..
T Consensus 42 ------------~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 95 (180)
T cd04137 42 ------------IRYK-GQDYHLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIY 95 (180)
T ss_pred ------------EEEC-CEEEEEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0010 01125789999997542 3445578888999988876654321 11 11
Q ss_pred --HHHh---hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 --AIKI---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 --~l~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.+.. ...|.++|+||+|+..................+..++.+++.++.++.+++..+....
T Consensus 96 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 96 DKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1111 1158999999999865332111111111123345688999999888888777665443
No 139
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.22 E-value=6.8e-11 Score=113.34 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=92.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|+|+|++++|||||++++.+..+ +... .|+... .+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~---------~~~---------------------------- 38 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE---------NYV---------------------------- 38 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee---------eeE----------------------------
Confidence 689999999999999999998875 3222 121111 000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--HH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DA 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~~ 192 (604)
..+...+.....+.||||||.... ..+...|++.+|++|+|++..+.. +... .+
T Consensus 39 ----------~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 39 ----------TNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred ----------EEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000011111225789999996432 445667899999999988665432 1111 12
Q ss_pred HHhh-----hcceeEEEecccCCCCCCC--H--HHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 193 IKIS-----RERTFGVLTKIDLMDKGTD--A--ADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 193 l~l~-----~~r~i~VltK~D~~~~~~~--~--~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
+... ..|+++|.||.|+.+.... . ...........+. .|+.+++.++.++++++..+.......
T Consensus 96 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 96 FPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 2222 1789999999998754310 0 1111111122333 688999999888888777666554433
No 140
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.2e-10 Score=119.46 Aligned_cols=178 Identities=19% Similarity=0.269 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCccee
Q 007422 8 VNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYA 87 (604)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~ 87 (604)
.++|..+.+.+.+ +--.|++.|+.|+||||++||++-.++||.|.|+||.|-.++- ..++.+.+.
T Consensus 95 ~~~l~~i~~~l~r------------~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve---gadG~e~vl 159 (749)
T KOG0448|consen 95 EDKLDAIDEVLAR------------RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE---GADGAEAVL 159 (749)
T ss_pred HHHHHHHHHHHhh------------cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec---ccCCcceee
Confidence 4555555655554 3457999999999999999999999999999999999987776 112222222
Q ss_pred eeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCC------CCceEeeCCCCccccCCCCCccHHHH
Q 007422 88 EFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDSIVQD 161 (604)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~------~~l~lvDtPGi~~~~~~~q~~~~~~~ 161 (604)
...+ ...-.|...+...+. +...... ....--+.|+.|+. .++.++|.||++-.+..
T Consensus 160 ~~~~--s~ek~d~~ti~~~~h-aL~~~~~-----~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~--------- 222 (749)
T KOG0448|consen 160 ATEG--SEEKIDMKTINQLAH-ALKPDKD-----LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL--------- 222 (749)
T ss_pred ccCC--CcccccHHHHhHHHH-hcCcccc-----cCcceEEEEEecCccchhhhccceeccCCCCCCchhh---------
Confidence 2222 112222222221111 1111100 11223455666654 37999999999765433
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCCCCCCHHH
Q 007422 162 IENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMDKGTDAAD 218 (604)
Q Consensus 162 i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~~~~~~~~ 218 (604)
...+.++...+|++|||+.+.+.- .+..+.+..+. ..++++.||||....+.++.+
T Consensus 223 -tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 223 -TSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred -hHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 677888999999999987655542 22233444433 556777899999877655543
No 141
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.21 E-value=1.3e-10 Score=109.62 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=62.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HHH-Hhh------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAI-KIS------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~l-~l~------~~r~i~VltK~ 207 (604)
.+.++||||..+. ..+...|++++|++|+|++..+.. +... ..+ ... ..|+++|.||+
T Consensus 54 ~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 120 (168)
T cd04149 54 KFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120 (168)
T ss_pred EEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECc
Confidence 6899999997542 556778999999999998766532 2111 111 121 16899999999
Q ss_pred cCCCCCC--CHHHHHhCCc-cccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+... +..+.+.... ......++.+++.++.++++.+..+
T Consensus 121 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 9865322 1222221111 1112246788999988887766544
No 142
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.21 E-value=1.5e-11 Score=118.21 Aligned_cols=103 Identities=24% Similarity=0.360 Sum_probs=61.1
Q ss_pred CCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEeccc
Q 007422 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKID 208 (604)
Q Consensus 133 ~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D 208 (604)
.....++|+||||..+. ...+...+..+|++|+||++... ...+.+.+..+. .|.++|+||+|
T Consensus 67 ~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D 133 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF-------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMD 133 (188)
T ss_dssp ESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCT
T ss_pred ccccceeecccccccce-------------eecccceecccccceeeeecccccccccccccccccccccceEEeeeecc
Confidence 34457999999997543 23344558899999888765432 233334444444 88999999999
Q ss_pred CCCCCCCHHHHHhCC------cccc----CCCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGTDAADILEGK------SYRL----KFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~------~~~l----~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+... +..+..+.. .... ..+++.+++..+.+++.+++.+.
T Consensus 134 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 134 LIEK--ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp SSHH--HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred chhh--hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 9822 222111110 0111 23477777777777765555443
No 143
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.21 E-value=4.3e-11 Score=113.11 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=58.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--HHHHhh-----hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKIS-----RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~~l~l~-----~~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...+++.+|++|+|++..+.. +... .++... ..|+++|.||+|
T Consensus 47 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 113 (174)
T smart00174 47 ELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLD 113 (174)
T ss_pred EEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChh
Confidence 5889999997543 334556889999999988655432 1111 122222 289999999999
Q ss_pred CCCCCCCHHHHH------------hCCccccC-CCEEEEEeCChhhhhccccHH
Q 007422 209 LMDKGTDAADIL------------EGKSYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~~~~~~l------------~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.++......+. .......+ .+|+.+++.++.++++++..+
T Consensus 114 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 114 LREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred hhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 876332111110 00011222 257777777777776665543
No 144
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.20 E-value=1.6e-10 Score=107.65 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=86.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.|+++|..|||||||+|+|++..+.|..++. +|+.+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~----------------------------------------- 39 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN----------------------------------------- 39 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE-----------------------------------------
Confidence 4899999999999999999965554444332 111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCCc-chh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQD-LAT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~---d~iIl~v~~a~~d-~~~ 189 (604)
...+ ...++++||||+..... +.........++..|+... +.++++++..... ...
T Consensus 40 -------------~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~ 99 (170)
T cd01876 40 -------------FFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID 99 (170)
T ss_pred -------------EEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH
Confidence 0001 11789999999866432 2334455667777788754 4555544332221 111
Q ss_pred h---HHHHhhhcceeEEEecccCCCCCCCHH--HHHhCCc--cccCCCEEEEEeCChhhhhccccHH
Q 007422 190 S---DAIKISRERTFGVLTKIDLMDKGTDAA--DILEGKS--YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 190 ~---~~l~l~~~r~i~VltK~D~~~~~~~~~--~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
. .++...+.++++|+||+|++.++.... ..+.... ......++.+++..+.++.++...+
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHH
Confidence 1 222223378999999999976543211 1111000 1223457778887777666555443
No 145
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.20 E-value=1.3e-10 Score=109.08 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
||+++|.+++|||||++.+.+..+ +.... +|-
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~-pt~---------------------------------------------- 32 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVV-PTT---------------------------------------------- 32 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-ccccc-ccC----------------------------------------------
Confidence 689999999999999999998764 22111 110
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l 193 (604)
| +. . +.+... ...+.+|||||.... +.++..|++++|++|+|++..+.. +. ...++
T Consensus 33 g----~~--~--~~i~~~-~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l 90 (164)
T cd04162 33 G----FN--S--VAIPTQ-DAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVVDSADSERLPLARQEL 90 (164)
T ss_pred C----cc--e--EEEeeC-CeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00 0 112222 236899999997543 566778999999999988765532 11 11111
Q ss_pred -Hh----hhcceeEEEecccCCCCC
Q 007422 194 -KI----SRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 194 -~l----~~~r~i~VltK~D~~~~~ 213 (604)
.+ ...|+++|.||.|+....
T Consensus 91 ~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 91 HQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 12 127899999999986543
No 146
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.20 E-value=4.3e-11 Score=112.67 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=64.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh-----hcceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS-----RERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~-----~~r~i~VltK~D~ 209 (604)
.+.+|||||.... ..+...++..+|++|+|++..+... . ...++... ..|+++|.||+|+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 50 RFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred EEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 6789999997543 2334567889999999886544321 1 11222222 2889999999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
........ ... ........|+.+++.++.++++++..+....
T Consensus 117 ~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 117 KDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 74332211 111 0112235699999999999888887766443
No 147
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.20 E-value=7.9e-11 Score=115.20 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch-hhHHHHhh---h-cceeEEEeccc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIKIS---R-ERTFGVLTKID 208 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~-~~~~l~l~---~-~r~i~VltK~D 208 (604)
+...+.|+||||.... ...+..+++.+|++|+|++....... ....+.++ + .++|+|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQY-------------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHH-------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchh
Confidence 3457999999997432 12234578899999998765442211 11122222 2 45778999999
Q ss_pred CCCCCCCH-HHH---HhCCccccC---CCEEEEEeCChhhhhcc
Q 007422 209 LMDKGTDA-ADI---LEGKSYRLK---FPWIGVVNRSQADINKN 245 (604)
Q Consensus 209 ~~~~~~~~-~~~---l~~~~~~l~---~g~~~v~~~s~~~i~~~ 245 (604)
+.+..... ..+ ++.....++ ..++.+++.++.++.+.
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 87532211 111 111011122 23788898888877643
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.19 E-value=1.3e-10 Score=108.63 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch--hhHHHHhh------hcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDAIKIS------RERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~--~~~~l~l~------~~r~i~VltK 206 (604)
..+.+|||||.... ..++..|++++|++|+|++..+.+ +. ......+. ..|+++|+||
T Consensus 44 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 110 (159)
T cd04150 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEEC
Confidence 36899999997542 567788999999999998765532 11 11111221 1789999999
Q ss_pred ccCCCCCC--CHHHHHhCCc-cccCCCEEEEEeCChhhhhccccHH
Q 007422 207 IDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 207 ~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.|+.+... +....+.... ......++.++++++.++++.+..+
T Consensus 111 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 111 QDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 99865322 1112221111 1111224568888888887765543
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.18 E-value=1.4e-10 Score=112.15 Aligned_cols=96 Identities=16% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh-hHHHHhh---hcceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKIS---RERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~-~~~l~l~---~~r~i~VltK~D~~~ 211 (604)
..+.||||||..+. ..++..|++.+|++++|++..+..... ...+..+ +.|.++|+||+|+.+
T Consensus 65 ~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 65 TKINIVDTPGHADF-------------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 47899999998653 456778999999999988765422111 1222322 278999999999975
Q ss_pred CCCC-----HHHHHhCC---ccccCCCEEEEEeCChhhhhc
Q 007422 212 KGTD-----AADILEGK---SYRLKFPWIGVVNRSQADINK 244 (604)
Q Consensus 212 ~~~~-----~~~~l~~~---~~~l~~g~~~v~~~s~~~i~~ 244 (604)
.... ..+.+... ....+..++.+++.++.++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 132 ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 3321 11111110 112244577788777666543
No 150
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.18 E-value=1.9e-10 Score=114.43 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 151
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.18 E-value=2e-10 Score=109.14 Aligned_cols=101 Identities=18% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHH-hh------hcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIK-IS------RERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~-l~------~~r~i~VltK 206 (604)
..+.++||||.... ..++..|++++|++|+|++.++.+ +.. .+.+. +. ..|+++|+||
T Consensus 57 ~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 57 ISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 36889999997543 667889999999999998766542 111 11221 11 1689999999
Q ss_pred ccCCCCCCCHHHHHh--CCc-c-ccCCCEEEEEeCChhhhhccccHHH
Q 007422 207 IDLMDKGTDAADILE--GKS-Y-RLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~--~~~-~-~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.|+.+... ..++.. +.. . ....-++.++++++.++++.+..+.
T Consensus 124 ~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 124 QDLPDAMK-AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred cCcccCCC-HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 99865322 222211 111 1 1111244688888888887766553
No 152
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.18 E-value=3e-10 Score=112.19 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=63.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCCcc-h-hhHHHHhh-------hcceeEEEec
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-KPNCIILAISPANQDL-A-TSDAIKIS-------RERTFGVLTK 206 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~-~~d~iIl~v~~a~~d~-~-~~~~l~l~-------~~r~i~VltK 206 (604)
.+.+|||||... .+...++. .+|++|+|++..+... . ..+++... ..|+|+|.||
T Consensus 51 ~l~i~Dt~G~~~---------------~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 51 TLVVIDHWEQEM---------------WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEeCCCcch---------------HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 688999999751 11123455 8999999886655321 1 11222211 2789999999
Q ss_pred ccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 207 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
+|+.+......+.........+..|+.+++..+.++++++..+.....
T Consensus 116 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 116 SDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred hhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 998754321111111111123457899999999999988887765544
No 153
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.17 E-value=1.2e-10 Score=110.75 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=87.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+|||+.++|||||++++.+..| |....+++....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~------------------------------------------ 38 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNY------------------------------------------ 38 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeee------------------------------------------
Confidence 3699999999999999999998775 332211111000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--H
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--D 191 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~ 191 (604)
...+.+.+ ....+.||||||.... ..+...|++++|++|+|++..+.+ +... .
T Consensus 39 ----------~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~ 94 (175)
T cd01874 39 ----------AVTVMIGG-EPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 94 (175)
T ss_pred ----------EEEEEECC-EEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHH
Confidence 00111111 1136889999998653 345566899999999998765532 2221 2
Q ss_pred HHHhhh-----cceeEEEecccCCCCCCCHHHHHhC-----------C--ccccC-CCEEEEEeCChhhhhccccHH
Q 007422 192 AIKISR-----ERTFGVLTKIDLMDKGTDAADILEG-----------K--SYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 192 ~l~l~~-----~r~i~VltK~D~~~~~~~~~~~l~~-----------~--~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
++...+ .|+++|.||+|+.+... ..+.+.. . ....+ ..|+.+++.++.++++.+..+
T Consensus 95 w~~~i~~~~~~~piilvgnK~Dl~~~~~-~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 95 WVPEITHHCPKTPFLLVGTQIDLRDDPS-TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred HHHHHHHhCCCCCEEEEEECHhhhhChh-hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 332222 78999999999865421 1111110 0 01222 467888888888777665543
No 154
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.17 E-value=5.4e-10 Score=119.04 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=64.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|++||.+|+|||||+|+|++..+.......||+.|+.-...-... .+... + +..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~----------~~~~r----------~----~~~ 57 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVE----------CPCKE----------L----GVK 57 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccC----------Cchhh----------h----hhh
Confidence 47999999999999999999998864444556888786522110000 00000 0 001
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a 183 (604)
....++.. ..+.....++++||||+......+ ..+.+...+.++++|++++||...
T Consensus 58 ~~~~~~~~-------~~~~~~~~i~i~D~aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 58 CNPRNGKC-------IDGTRFIPVELIDVAGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hccccccc-------cCCcceeeEEEEEcCCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 11000000 000111368999999997644322 223444556699999999988654
No 155
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.17 E-value=2.5e-10 Score=127.10 Aligned_cols=129 Identities=21% Similarity=0.303 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|+++|++++|||||+|+|.|..+.....+..|+-.-.... . + ... .
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~----------~-----------~~~--------~ 52 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-P----------M-----------DVI--------E 52 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-e----------e-----------ccc--------c
Confidence 67999999999999999999999987644433434432100000 0 0 000 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
...+. . .. ...+. ...++++||||||.... ..+...+++.+|++++|++..+. ...+.+
T Consensus 53 ~~~~~---~-~~--~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e 112 (590)
T TIGR00491 53 GICGD---L-LK--KFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADLAILIVDINEGFKPQTQE 112 (590)
T ss_pred ccccc---c-cc--ccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCcCCCHhHHH
Confidence 00000 0 00 00011 11246999999997543 45566788999999998765432 112223
Q ss_pred HHHhh---hcceeEEEecccCCC
Q 007422 192 AIKIS---RERTFGVLTKIDLMD 211 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~ 211 (604)
.+.++ ..|+++|+||+|+.+
T Consensus 113 ~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 113 ALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHcCCCEEEEEECCCccc
Confidence 33333 388999999999874
No 156
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.5e-11 Score=119.02 Aligned_cols=165 Identities=23% Similarity=0.333 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcc---cccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPR---GSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQ 108 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~---~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (604)
..-|.|.++|.-|.||||+|+.|++.++ |. |..++|..-+.+-... ..+.-+--...-.+...|..+...-..+.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~-~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGD-EEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecC-cccccCCceeeecCCCchhhhhhhHHHHH
Confidence 3789999999999999999999999986 52 2334444433333221 11111111111122222222222222222
Q ss_pred HhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch
Q 007422 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (604)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~ 188 (604)
. +. .+..+.++-...+++|||||+.+... |.-+-.-.....+..|+.++|.|||+.+++..|++
T Consensus 134 n---Rf-----------~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs 197 (532)
T KOG1954|consen 134 N---RF-----------MCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 197 (532)
T ss_pred H---HH-----------HHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhcccc
Confidence 1 11 12224444455899999999987532 22222223467788999999999999999888876
Q ss_pred hh--HHHHhhh---cceeEEEecccCCCCCC
Q 007422 189 TS--DAIKISR---ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 189 ~~--~~l~l~~---~r~i~VltK~D~~~~~~ 214 (604)
.. .++...+ ..+-+|+||.|.++...
T Consensus 198 dEf~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 198 DEFKRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred HHHHHHHHHhhCCcceeEEEeccccccCHHH
Confidence 43 4444333 88899999999998653
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.16 E-value=1.8e-10 Score=111.05 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHh---hhcceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKI---SRERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l---~~~r~i~VltK~D~~~ 211 (604)
..+++|||||... .++. ....+..+|++++|+++.... ....+.+.. ...+.++|+||+|+..
T Consensus 68 ~~~~i~DtpG~~~------------~~~~-~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHAS------------LIRT-IIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHH------------HHHH-HHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 4789999999732 1122 234456789998887654421 111122222 2378999999999975
Q ss_pred CCCC--HHHHHhCC---c----cccCCCEEEEEeCChhhhhccccHHHH
Q 007422 212 KGTD--AADILEGK---S----YRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 212 ~~~~--~~~~l~~~---~----~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.... ..+.+... . ......++.+++.++.+++++...+..
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 135 EEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 4321 11111110 0 012346888999888888776665543
No 158
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.16 E-value=1.1e-10 Score=109.49 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHH---HHh-----hhcceeEEEec
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDA---IKI-----SRERTFGVLTK 206 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~---l~l-----~~~r~i~VltK 206 (604)
.+.+|||||..... ......+++.+|++|+|++..+.. +.. ..+ +.. ...|+++|.||
T Consensus 48 ~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 57899999986421 223456788999999988665532 111 111 111 12789999999
Q ss_pred ccCCCCCCCHHHHHhCCccccCCCEEEEEeCCh-hhhhccccHHH
Q 007422 207 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ-ADINKNVDMIA 250 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~-~~i~~~~~~~~ 250 (604)
+|+.....-..+.........+..|+.+++..+ .++++++..+.
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred CchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 998543221111111111223457888888877 47776665443
No 159
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.16 E-value=1.5e-10 Score=110.82 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=61.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.+|||+|.... ..+...|++++|++++|++..+.+. .. ..++.... ...|+|.||+|+
T Consensus 50 ~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl 116 (182)
T cd04128 50 TFSIWDLGGQREF-------------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDL 116 (182)
T ss_pred EEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 6889999997543 4567789999999999887655421 11 12333222 234789999998
Q ss_pred CCCCC--C---HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 210 MDKGT--D---AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 210 ~~~~~--~---~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..... . ..+.........+..|+.+++.++.++++++..+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 117 FADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred cccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 63211 1 111111111123356888888888888877765544
No 160
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.15 E-value=2.9e-10 Score=111.89 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=42.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HHH-Hhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAI-KISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~l-~l~~-----~r~i~VltK~D 208 (604)
++.||||||.... ..+...|++.+|++|+|++..+.+ +... .++ .+.+ .++|+|.||+|
T Consensus 45 ~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~D 111 (220)
T cd04126 45 NISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLD 111 (220)
T ss_pred EEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 5889999997543 456678899999999988655432 1111 111 1111 67999999999
Q ss_pred CCC
Q 007422 209 LMD 211 (604)
Q Consensus 209 ~~~ 211 (604)
+.+
T Consensus 112 L~~ 114 (220)
T cd04126 112 LTE 114 (220)
T ss_pred ccc
Confidence 875
No 161
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.15 E-value=3.3e-10 Score=103.89 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~ 64 (604)
++|+++|.+|||||||+|+|++.. .|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 589999999999999999999987 45544
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.15 E-value=2.6e-10 Score=127.16 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...|.|+++|..++|||||+++|.+..+.....+..|.-
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~----------------------------------------- 123 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQH----------------------------------------- 123 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeec-----------------------------------------
Confidence 477999999999999999999999877622221111100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~ 190 (604)
+.. .. +..++...++||||||...+ ..+...+...+|.+|||++..+. ...+.
T Consensus 124 ---------ig~--~~--v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVVda~dgv~~qT~ 177 (587)
T TIGR00487 124 ---------IGA--YH--VENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVVAADDGVMPQTI 177 (587)
T ss_pred ---------ceE--EE--EEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEEECCCCCCHhHH
Confidence 000 01 11112226899999998654 34556788899999998854332 12233
Q ss_pred HHHHhhh---cceeEEEecccCCCCCC-CHHHHHhCCc-----cccCCCEEEEEeCChhhhhccccHH
Q 007422 191 DAIKISR---ERTFGVLTKIDLMDKGT-DAADILEGKS-----YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~~~~~-~~~~~l~~~~-----~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+..++ .|+++++||+|+.+... .....+.... +.....++.+++.++.++++++..+
T Consensus 178 e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 178 EAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred HHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 4444433 79999999999864321 1222221110 0111247778887777777665544
No 163
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=4.2e-10 Score=107.66 Aligned_cols=102 Identities=16% Similarity=0.296 Sum_probs=61.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHHHHh------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKI------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~l~l------~~~r~i~VltK 206 (604)
..+.++||||.... +.++..|++.+|++|+|++..+.+ +.. ...... ...|+++|+||
T Consensus 61 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 61 LKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 36899999997542 667889999999999998765432 111 111111 12689999999
Q ss_pred ccCCCCCCCHHHHHh--CCccccCCC--EEEEEeCChhhhhccccHHHH
Q 007422 207 IDLMDKGTDAADILE--GKSYRLKFP--WIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~--~~~~~l~~g--~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.|+.+... ..++.. +....-... ++.+++.++.++++++..+..
T Consensus 128 ~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 128 QDLPNAMS-TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCCCCCC-HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 99854321 112211 111111122 345688888888877766543
No 164
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.14 E-value=3.8e-10 Score=106.53 Aligned_cols=145 Identities=19% Similarity=0.361 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+++|.+|||||||+++|.|..+ +. ..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SH------ITP----------------------------------------- 44 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cc------cCC-----------------------------------------
Confidence 457899999999999999999999754 10 011
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
+.++... . +... ...+.++||||.... ...+..+++.+|+++++++..+.. +.. .
T Consensus 45 -----t~g~~~~--~--i~~~-~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 45 -----TQGFNIK--T--VQSD-GFKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred -----CCCcceE--E--EEEC-CEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 0000000 1 1111 236889999996432 456778889999999988665432 111 1
Q ss_pred HHH----Hh---hhcceeEEEecccCCCCCCCHHHHHhCC-ccccC---CCEEEEEeCChhhhhccccHH
Q 007422 191 DAI----KI---SRERTFGVLTKIDLMDKGTDAADILEGK-SYRLK---FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l----~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l~---~g~~~v~~~s~~~i~~~~~~~ 249 (604)
..+ .. ...|+++|+||+|+.+... ..++.... ...+. ..++.+++.+++++++.+.++
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 111 11 1278999999999865432 22222111 11111 134678888888887766544
No 165
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.14 E-value=1.4e-10 Score=109.62 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+++|++|+|||||++++++..|-|....+++..-..+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~------------------------------------- 45 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVN------------------------------------- 45 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEE-------------------------------------
Confidence 4568999999999999999999998862122211111100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
.+.+.+ ....+.++|++|-... ..+...|++++|++|+|++..+... .. .
T Consensus 46 --------------~~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~~~s~~~~~ 97 (169)
T cd01892 46 --------------TVEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSDPKSFSYCA 97 (169)
T ss_pred --------------EEEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCCHHHHHHHH
Confidence 011111 1125789999997543 3345677899999999886544321 11 1
Q ss_pred HHHHhh----hcceeEEEecccCCCCCCC----HHHHHhCCccccCC-CEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS----RERTFGVLTKIDLMDKGTD----AADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~----~~r~i~VltK~D~~~~~~~----~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+.... ..++. ..++. .++.+++.++.++++++..+.
T Consensus 98 ~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 162 (169)
T cd01892 98 EVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC----RKLGLPPPLHFSSKLGDSSNELFTKLA 162 (169)
T ss_pred HHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH----HHcCCCCCEEEEeccCccHHHHHHHHH
Confidence 223322 2789999999998654321 11221 11222 357888888888777665544
No 166
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=5.6e-10 Score=106.71 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=62.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHHHHhh------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKIS------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~l~l~------~~r~i~VltK~ 207 (604)
.+.++||||... .+.++..|++++|++|+|++..+.+ +.. ....... ..|+++|+||.
T Consensus 62 ~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~ 128 (181)
T PLN00223 62 SFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
T ss_pred EEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECC
Confidence 688999999643 2677889999999999998765532 111 1111111 26899999999
Q ss_pred cCCCCCCCHHHHHhCCcc-cc-CCC--EEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTDAADILEGKSY-RL-KFP--WIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~-~l-~~g--~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+... ..++...... .+ ... ++.+++++++|+++.+..+...
T Consensus 129 Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 129 DLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCCCC-HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 9865432 2222211111 01 112 3457888888888877766543
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.14 E-value=1.9e-10 Score=130.14 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=93.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...|.|+|+|..++|||||+++|.+..+.....+..|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiT------------------------------------------- 278 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGIT------------------------------------------- 278 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccc-------------------------------------------
Confidence 4789999999999999999999998765211111111
Q ss_pred hhhcCCCCcccCccEEEEEec-CCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchh
Q 007422 112 DRETGRTKQISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~ 189 (604)
..+... .+.+.. .....++||||||...+ ..++..++..+|++||||++.+. ...+
T Consensus 279 -------q~i~~~--~v~~~~~~~~~kItfiDTPGhe~F-------------~~mr~rg~~~aDiaILVVDA~dGv~~QT 336 (742)
T CHL00189 279 -------QKIGAY--EVEFEYKDENQKIVFLDTPGHEAF-------------SSMRSRGANVTDIAILIIAADDGVKPQT 336 (742)
T ss_pred -------cccceE--EEEEEecCCceEEEEEECCcHHHH-------------HHHHHHHHHHCCEEEEEEECcCCCChhh
Confidence 111101 111111 12347999999997543 55667788999999998854332 1223
Q ss_pred hHHHHhhh---cceeEEEecccCCCCCC-CHHHHHhCC-ccc--c--CCCEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKISR---ERTFGVLTKIDLMDKGT-DAADILEGK-SYR--L--KFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~~---~r~i~VltK~D~~~~~~-~~~~~l~~~-~~~--l--~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+.+..+. .|+|+|+||+|+.+... .....+... ..+ . ...++.+++.++.++++++..+..
T Consensus 337 ~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 337 IEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred HHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhh
Confidence 34444443 89999999999875321 112222111 011 1 135788888888888777665543
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.13 E-value=2.2e-10 Score=111.56 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=62.2
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhhHHHHhhh----cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISR----ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~~~l~l~~----~r~i~VltK~D~ 209 (604)
..++||||||... +...+...+..+|++++|++..... ..+.+.+..+. .++++|+||+|+
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 4689999999532 2334456677889999988765422 12223333322 478999999999
Q ss_pred CCCCCC--HHHHHhCCc---cccCCCEEEEEeCChhhhhccccHHHH
Q 007422 210 MDKGTD--AADILEGKS---YRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 210 ~~~~~~--~~~~l~~~~---~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+.... ..+.+.... ......++.+++.++.++++++..+..
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 753211 111111100 112346889999999888887776654
No 169
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.13 E-value=3.1e-10 Score=129.46 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...|.|+|+|..++|||||+++|.+..+.....+..|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT------------------------------------------- 324 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGIT------------------------------------------- 324 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCcee-------------------------------------------
Confidence 4789999999999999999999988765211111000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~ 190 (604)
..+. ...+.+ . ...++||||||...+ ..+...++..+|++|||++..+. ...+.
T Consensus 325 -------~~ig--a~~v~~--~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVVdAddGv~~qT~ 379 (787)
T PRK05306 325 -------QHIG--AYQVET--N-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVVAADDGVMPQTI 379 (787)
T ss_pred -------eecc--EEEEEE--C-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEEECCCCCCHhHH
Confidence 0000 011112 1 136899999998654 44556788899999998754332 12233
Q ss_pred HHHHhhh---cceeEEEecccCCCCCC-CHHHHHhC-Cccc----cCCCEEEEEeCChhhhhccccHH
Q 007422 191 DAIKISR---ERTFGVLTKIDLMDKGT-DAADILEG-KSYR----LKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~~~~~-~~~~~l~~-~~~~----l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+..+. .|+|+|+||+|+..... .....+.. ...+ ....++.+++.++.++++++..+
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred HHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 4444443 89999999999864321 11111111 1111 11357888888877777665544
No 170
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.12 E-value=4.4e-10 Score=112.71 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=63.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-HH---H-Hh-----------hhcc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DA---I-KI-----------SRER 199 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~~---l-~l-----------~~~r 199 (604)
.+.||||||.... ..+...|+..+|++|+|++..+.+ +... .+ + .. ...|
T Consensus 49 ~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 49 QLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 6789999997543 345556788999999988665532 1111 11 1 10 1278
Q ss_pred eeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 200 TFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 200 ~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+|+|.||+|+..... ...++.+.........|+.+++.++.++++++..+..
T Consensus 116 iIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 116 MVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred EEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999975322 2222211101112356899999999998887766554
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.12 E-value=2.2e-10 Score=110.30 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=62.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--HHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~~l~l~~-----~r~i~VltK~D 208 (604)
.+.|+||||.... ..+...|++.+|++|+|++..+.+ +... .++.... .|+++|.||+|
T Consensus 49 ~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~D 115 (189)
T cd04134 49 ELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCD 115 (189)
T ss_pred EEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 6889999997543 334556889999999887654432 2221 2333322 78999999999
Q ss_pred CCCCCCCHHHH----------HhCCc--cccC-CCEEEEEeCChhhhhccccHHHH
Q 007422 209 LMDKGTDAADI----------LEGKS--YRLK-FPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 209 ~~~~~~~~~~~----------l~~~~--~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+.+.......+ -++.. ...+ ..|+.+++.++.++++.+..+..
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 116 LREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 87543211000 00000 1112 46889999988888887765553
No 172
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.11 E-value=4e-10 Score=106.59 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=66.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
..|+|+|++|+|||||++++.+..+ |....+++ .+..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~-~~~~----------------------------------------- 38 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV-FENY----------------------------------------- 38 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc-ccce-----------------------------------------
Confidence 5799999999999999999998765 32211111 0000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--H
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--D 191 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~ 191 (604)
...+.+.+ ....+.++||||.... ..+...++.++|+++++++..+.+ +... .
T Consensus 39 ----------~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 39 ----------VADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred ----------EEEEEECC-EEEEEEEEeCCCchhh-------------hhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00111111 1125889999997542 223345778999998876544321 1111 1
Q ss_pred HHHhh-----hcceeEEEecccCCCC
Q 007422 192 AIKIS-----RERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~-----~~r~i~VltK~D~~~~ 212 (604)
++... ..|+++|.||+|+.+.
T Consensus 95 ~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhCCCCCEEEEeeChhcccC
Confidence 22211 2789999999998754
No 173
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.11 E-value=2.4e-10 Score=128.00 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=66.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhHHHHhh--hcceeEEEecccCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKIS--RERTFGVLTKIDLMDK 212 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~~l~l~--~~r~i~VltK~D~~~~ 212 (604)
++.+|||||..+..... .. +.+.+.|+. .+|.+++++++.+.+.......+.. ..|+++|+||+|+.++
T Consensus 42 ~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEK 114 (591)
T ss_pred EEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHh
Confidence 58899999997653321 11 234455554 6899988876655332211122222 2899999999998654
Q ss_pred CCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 213 GTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 213 ~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.....+. +.....++..++.++++++++++++.+.+...
T Consensus 115 ~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 115 KGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred CCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3211111 11122345679999999999999888776543
No 174
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.11 E-value=2.2e-08 Score=112.20 Aligned_cols=467 Identities=23% Similarity=0.261 Sum_probs=330.2
Q ss_pred eeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHH
Q 007422 86 YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM 165 (604)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~ 165 (604)
+..+.+.+.....++..++.+....+....+...++...++.+.+.......++.+|.||+...+...+++++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 34555666677788899999998888888888889999999999988888899999999999998888888777777677
Q ss_pred HHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhh
Q 007422 166 VRSYIEKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 243 (604)
Q Consensus 166 ~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~ 243 (604)
-..++...+++|......+.+..+......++ .+ +.++.+.++.+.+.... .+.++..+.+..+.++.
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 152 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR---VPTKINFLNGGTNLTLI-------LGNGDVLVVDALETDIQ 152 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc---hhHHHHHHhcCCceeee-------eccccccccCchhHHHH
Confidence 78888888888888777777776666655555 44 77777776665432211 45677777777888888
Q ss_pred ccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChh
Q 007422 244 KNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAG 323 (604)
Q Consensus 244 ~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~ 323 (604)
.......+...+..+|..++.+.+....++...+...++..+..++....|............ .+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------ 220 (546)
T COG0699 153 LLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN------ 220 (546)
T ss_pred hcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch------
Confidence 888888888899999999999988777799999999999999999998888766655444332 12111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCchhHhHHhhhHHHHHhcccccccCchHHHHHHHHHhccCCCCCCCchHHHHH
Q 007422 324 GKLYTIMEICRLFDQIYKEHLDGVRPGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRR 403 (604)
Q Consensus 324 ~~~~~l~~~~~~f~~~~~~~i~g~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~g~~p~~f~pe~~f~~ 403 (604)
.+......|...++....|. ++... ...| .....+....+....-++.|.+|..|....++..
T Consensus 221 ----~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (546)
T COG0699 221 ----EVLAVIQTLLKRLSELVRGA-----RIRLN-IILF-------SDLEEVSDSPVLLKELASKGERPSLLSGLTLLDT 283 (546)
T ss_pred ----HHHHHHHHHHHHHHHHhccc-----hhhhh-hccc-------chHHHhhhhhhHHHHHcccCCCccccccccchhh
Confidence 24444556655555444433 22222 0001 1111123334555555667777767777788889
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 007422 404 LIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTV 483 (604)
Q Consensus 404 li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~y~~~ 483 (604)
++..++..+..+..+|+..+...+.++....+. .....+||.+...+...+.+...+........+...++.+..|+++
T Consensus 284 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (546)
T COG0699 284 LVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEERYINT 362 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 999999989999988888888877776433332 2467899999999998888887888888888899999999888873
Q ss_pred c---ccc---------cC-------------c--cccccCCCCC---------------C-----------C------C-
Q 007422 484 D---FFR---------KL-------------P--QDVDKGGNPT---------------H-----------S------I- 503 (604)
Q Consensus 484 ~---~~~---------~~-------------~--~~~~~~~~~~---------------~-----------~------~- 503 (604)
. +.. .. . ......+... . . .
T Consensus 363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
T COG0699 363 KHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDALLAT 442 (546)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchhhhcc
Confidence 1 110 00 0 0000000000 0 0 0
Q ss_pred -------C-CCC---chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhhCC
Q 007422 504 -------F-DRY---NDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNE 572 (604)
Q Consensus 504 -------~-~~~---~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~lL~E 572 (604)
. ... .....+.+..++++| ..+...+.|.++++++..+.+..+...+......++.... .+.+..+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 519 (546)
T COG0699 443 LGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQL--EDELLRT 519 (546)
T ss_pred chHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 0 000 011124567899999 9999999999999999999666666656555556555543 6788888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 007422 573 DPAVMERRSALAKRLELYRSAQS 595 (604)
Q Consensus 573 ~~~i~~kR~~l~~~l~~L~~A~~ 595 (604)
.+.+...|..+.+..+.+.++..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 520 AEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888764
No 175
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.11 E-value=2e-10 Score=114.03 Aligned_cols=153 Identities=19% Similarity=0.279 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..+-|.+||-||||||||||||+..+-=--....+|-.|..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~i--------------------------------------- 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHI--------------------------------------- 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecccc---------------------------------------
Confidence 45678899999999999999999876211112234444411
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
|. +...+..++++-|.||++..+..+. -+---..+.|+.++.+++||+-++. +....+
T Consensus 236 ---G~------------v~yddf~q~tVADiPGiI~GAh~nk------GlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~ 294 (366)
T KOG1489|consen 236 ---GT------------VNYDDFSQITVADIPGIIEGAHMNK------GLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQ 294 (366)
T ss_pred ---ce------------eeccccceeEeccCccccccccccC------cccHHHHHHHHhhceEEEEEECCCcccCCHHH
Confidence 10 2223334699999999998765432 1122345667889999888765554 222222
Q ss_pred HHHhh------------hcceeEEEecccCCCCCCCHHHHHhCCccccCCC-EEEEEeCChhhhhccccH
Q 007422 192 AIKIS------------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDM 248 (604)
Q Consensus 192 ~l~l~------------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~ 248 (604)
.+++. .++.++|+||+|+.+...+. +......+..+ .++|++.+++++..++..
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~ll~~ 361 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEELLNG 361 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHHHHHH
Confidence 22222 17799999999986433332 12112234444 788999998877665543
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.11 E-value=2.8e-10 Score=127.36 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHh---hhcc-eeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKI---SRER-TFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l---~~~r-~i~VltK~D~~ 210 (604)
..++||||||..+. ...+..++.++|++++|++..+.. ..+.+.+.. .+.+ .++|+||+|+.
T Consensus 50 ~~v~~iDtPGhe~f-------------~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHEKF-------------ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHHHH-------------HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 47899999996432 333456788999999987654321 122233333 3355 99999999998
Q ss_pred CCCC------CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 211 DKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 211 ~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++.. +..+++.+........++.+++.++.+++++...+....
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 6432 111222211111135789999999999988777665443
No 177
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.10 E-value=3.5e-10 Score=117.80 Aligned_cols=128 Identities=26% Similarity=0.333 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCC-----CCcccccccccccEEEEEEec
Q 007422 5 ISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKD-----FLPRGSGIVTRRPLVLQLHKL 79 (604)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~-----~lP~~~~~~Tr~p~~i~l~~~ 79 (604)
..++.++++++..+.. ..-.|+|+|+.|+|||||||||-|.. .-|+|...+|..|
T Consensus 18 ~~~~s~i~~~l~~~~~------------~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~-------- 77 (376)
T PF05049_consen 18 QEVVSKIREALKDIDN------------APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP-------- 77 (376)
T ss_dssp HHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---------
T ss_pred HHHHHHHHHHHHHhhc------------CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--------
Confidence 3456666666666653 23489999999999999999998853 1222222222222
Q ss_pred CCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHH
Q 007422 80 EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV 159 (604)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~ 159 (604)
-...+|..|+++|||+||+...... ..
T Consensus 78 ------------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~f~-----~~ 104 (376)
T PF05049_consen 78 ------------------------------------------------TPYPHPKFPNVTLWDLPGIGTPNFP-----PE 104 (376)
T ss_dssp ------------------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------HH
T ss_pred ------------------------------------------------eeCCCCCCCCCeEEeCCCCCCCCCC-----HH
Confidence 1255788899999999999654221 11
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCCc---chhhHHHHhhhcceeEEEecccC
Q 007422 160 QDIENMVRSYIEKPNCIILAISPANQD---LATSDAIKISRERTFGVLTKIDL 209 (604)
Q Consensus 160 ~~i~~~~~~~i~~~d~iIl~v~~a~~d---~~~~~~l~l~~~r~i~VltK~D~ 209 (604)
..++.+ -+..-|.+|++ .+.... ..-...++..+++.++|-||+|.
T Consensus 105 ~Yl~~~---~~~~yD~fiii-~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 105 EYLKEV---KFYRYDFFIII-SSERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHHT---TGGG-SEEEEE-ESSS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHHc---cccccCEEEEE-eCCCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 222211 23457877654 332221 11112223333999999999995
No 178
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.10 E-value=6.6e-10 Score=105.49 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=60.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--HHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~~l~l~~-----~r~i~VltK~D 208 (604)
.+.|+||||.... ..+...|++++|++|+|++..+.+ +... .++.... .|+++|.||+|
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D 116 (174)
T cd01871 50 NLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 116 (174)
T ss_pred EEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 6789999996543 445567899999999988765532 1111 1222222 68999999999
Q ss_pred CCCCCCCHHHHHh----------CC--ccccC-CCEEEEEeCChhhhhccccHH
Q 007422 209 LMDKGTDAADILE----------GK--SYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~~~~~~l~----------~~--~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+.......+.. +. ...++ ..|+.+++.++.++++++..+
T Consensus 117 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 8643211111100 00 11122 357888888887777665543
No 179
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=6.7e-10 Score=121.22 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.+|+|||.+|+||||++|+|+|...+.++.. .+|.....+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 5899999999999999999999986555432 3333222211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecC--CCcchh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPA--NQDLAT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a--~~d~~~ 189 (604)
+ .+ +...+.+|||||+...... ......+...+..++. .+|++|+|..-. ..+...
T Consensus 161 --~------------~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 161 --G------------LV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSND 220 (763)
T ss_pred --E------------EE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHH
Confidence 0 01 1236899999999875321 1234455556666776 478777664221 223233
Q ss_pred hHHHHhhh--------cceeEEEecccCCCC
Q 007422 190 SDAIKISR--------ERTFGVLTKIDLMDK 212 (604)
Q Consensus 190 ~~~l~l~~--------~r~i~VltK~D~~~~ 212 (604)
..+++... .++|+|+|+.|..++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33444433 999999999999964
No 180
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.08 E-value=4.4e-10 Score=101.83 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHH---Hh-----hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAI---KI-----SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l---~l-----~~~r~i~VltK 206 (604)
..++++||||.... ......+++.+|+++++++..+... .....+ .. ...++++|+||
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk 111 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNK 111 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEec
Confidence 36899999998654 2233678899999988876554321 111111 11 11899999999
Q ss_pred ccCCCCCCCHHHH-HhCCccccCCCEEEEEeCChhhhhcccc
Q 007422 207 IDLMDKGTDAADI-LEGKSYRLKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 207 ~D~~~~~~~~~~~-l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 247 (604)
+|+.+........ ..........+++.+++..+.++.++..
T Consensus 112 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 112 IDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred cccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 9988654432211 1111223346788888887776655443
No 181
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.08 E-value=5.5e-10 Score=110.28 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=41.2
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCCcchhh--HHHHhhh---cceeEEEecc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDLATS--DAIKISR---ERTFGVLTKI 207 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i-~~~d~iIl~v~~a~~d~~~~--~~l~l~~---~r~i~VltK~ 207 (604)
....++||||||..+. .+.+..... ..+|.+++++++ +.+...+ +.+.++. .|.++|+||+
T Consensus 82 ~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda-~~g~~~~d~~~l~~l~~~~ip~ivvvNK~ 148 (224)
T cd04165 82 SSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAA-NAGIIGMTKEHLGLALALNIPVFVVVTKI 148 (224)
T ss_pred CCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEEC-CCCCcHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3457999999997542 233333322 368988887654 3333322 2333333 8899999999
Q ss_pred cCCCC
Q 007422 208 DLMDK 212 (604)
Q Consensus 208 D~~~~ 212 (604)
|++++
T Consensus 149 D~~~~ 153 (224)
T cd04165 149 DLAPA 153 (224)
T ss_pred cccCH
Confidence 98764
No 182
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.4e-10 Score=104.51 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
.-+..|+|+|+.|+|||-|+-.+.+..| |-..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~----------------------------------------------- 38 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY----------------------------------------------- 38 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCc-chhh-----------------------------------------------
Confidence 4688999999999999999999998876 2221
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-h
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-T 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~ 189 (604)
..+-++......+++.+... .|.+|||.|--++ +.++.+|.+++|.||+|.+-.... +. -
T Consensus 39 ----~sTIGVDf~~rt~e~~gk~i-KlQIWDTAGQERF-------------rtit~syYR~ahGii~vyDiT~~~SF~~v 100 (205)
T KOG0084|consen 39 ----ISTIGVDFKIRTVELDGKTI-KLQIWDTAGQERF-------------RTITSSYYRGAHGIIFVYDITKQESFNNV 100 (205)
T ss_pred ----cceeeeEEEEEEeeecceEE-EEEeeeccccHHH-------------hhhhHhhccCCCeEEEEEEcccHHHhhhH
Confidence 12222333333444444443 7999999997554 789999999999999987543321 11 1
Q ss_pred hHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCC-EEEEEeCChhhhhccccHHHHHHHHH
Q 007422 190 SDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 190 ~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
..|+...+ .+.++|.||+|+.+...-..+..+.-...++.+ |+.+++.++.++++.+..+.....++
T Consensus 101 ~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 101 KRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 23333333 589999999999875432111111122345556 89999988888777666555544443
No 183
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.07 E-value=5.5e-10 Score=106.22 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=90.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|+|+|+.++|||||+..++...| +....++. ...
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti-~~~------------------------------------------- 37 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV-FDN------------------------------------------- 37 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcc-eee-------------------------------------------
Confidence 689999999999999999998776 33221111 000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~ 192 (604)
+ ...+.+.+ ....+.||||+|.... ..+...|++++|++|+|.+-.+.. +.. ..+
T Consensus 38 -----~---~~~~~~~~-~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 38 -----F---SANVSVDG-NTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred -----e---EEEEEECC-EEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 0 00111211 1236899999997654 445667999999999998655432 222 133
Q ss_pred HHhhh-----cceeEEEecccCCCCCC----------CHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHH
Q 007422 193 IKISR-----ERTFGVLTKIDLMDKGT----------DAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l~l~~-----~r~i~VltK~D~~~~~~----------~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+...+ .++++|.||+|+.+... ...+.........+. +|+.+++.++.++++.+..+.
T Consensus 96 ~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 96 VPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred HHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 33332 78999999999965421 001111111122333 588888888888877665544
No 184
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.06 E-value=5.4e-10 Score=105.75 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~l~l~~-----~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...|++++|++|+|++..+.. +.. ..++.... .|+++|.||+|
T Consensus 49 ~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 115 (173)
T cd04130 49 RLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence 5789999998543 333456889999999988655432 221 12332221 78999999999
Q ss_pred CCCCCCCHHHHHh------------CCccccCC-CEEEEEeCChhhhhccccH
Q 007422 209 LMDKGTDAADILE------------GKSYRLKF-PWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 209 ~~~~~~~~~~~l~------------~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 248 (604)
+.+.......+.. ......+. .|+.+++.++.+++++++.
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~ 168 (173)
T cd04130 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDT 168 (173)
T ss_pred hccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 8653211110100 00112233 6888888888888776543
No 185
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.06 E-value=7.5e-10 Score=104.61 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=55.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh--HHHHhh-----hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS--DAIKIS-----RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~--~~l~l~-----~~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...+++.+|++|+|++..+... ... .+.... ..|.++|.||+|
T Consensus 49 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~D 115 (174)
T cd04135 49 LLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQID 115 (174)
T ss_pred EEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchh
Confidence 4789999997553 2233457789999988876544321 111 122221 288999999999
Q ss_pred CCCCCCCHHHHHh----------CC--ccccC-CCEEEEEeCChhhhhccccH
Q 007422 209 LMDKGTDAADILE----------GK--SYRLK-FPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 209 ~~~~~~~~~~~l~----------~~--~~~l~-~g~~~v~~~s~~~i~~~~~~ 248 (604)
+.+.......+.. +. ...++ ..|+.+++.++.++++++..
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 116 LRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHH
Confidence 8654321110000 00 01122 24777787777777766543
No 186
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.06 E-value=1e-09 Score=111.82 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=73.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..|+|||..|+|||||+|+|++..+.+.+.... +..+
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~------------------------------------------ 42 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH------------------------------------------ 42 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc------------------------------------------
Confidence 479999999999999999999998755432211 0000
Q ss_pred hcCCCCcccCccEEEEEecCC-CCCceEeeCCCCccccCC-CCCccHHHHHHHHHHHhh------------c--CCCeEE
Q 007422 114 ETGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYI------------E--KPNCII 177 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPGi~~~~~~-~q~~~~~~~i~~~~~~~i------------~--~~d~iI 177 (604)
. ..+..+... ...+...+ ...+++|||||+.+.... ..-+.+...+.+....|+ . +.|+++
T Consensus 43 ~-~~T~~i~~~--~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~l 119 (276)
T cd01850 43 I-DKTVEIKSS--KAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACL 119 (276)
T ss_pred c-CCceEEEEE--EEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEE
Confidence 0 000000000 11111111 126999999999765321 111223333333333333 2 357777
Q ss_pred EEEecCCCcchhhH--HHHhhh--cceeEEEecccCCCC
Q 007422 178 LAISPANQDLATSD--AIKISR--ERTFGVLTKIDLMDK 212 (604)
Q Consensus 178 l~v~~a~~d~~~~~--~l~l~~--~r~i~VltK~D~~~~ 212 (604)
+++.+....+...+ .++... .++|+|+||+|++.+
T Consensus 120 y~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 120 YFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTP 158 (276)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCH
Confidence 77776654444332 233222 789999999999864
No 187
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.06 E-value=7e-10 Score=112.55 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=44.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||..+. ...+..+++.+|++|++|++.... ..+...+..+. .|.++++||+|+..
T Consensus 64 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 47899999998653 234678899999999887654421 22233344333 78999999999875
No 188
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.06 E-value=1.2e-09 Score=108.24 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|+|||+.++|||||++.+++..| +.... |+...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~-----pTi~~------------------------------------- 48 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV-----PTVFE------------------------------------- 48 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC-----Cceee-------------------------------------
Confidence 456899999999999999999998876 32221 11100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-- 189 (604)
.+ ...+.+.+ ....|.||||||-... ..+...|++++|++|+|++..+.+. ..
T Consensus 49 -------~~---~~~i~~~~-~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NY---TAGLETEE-QRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------ee---EEEEEECC-EEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 00 00111111 1236889999996443 5566789999999999887655432 11
Q ss_pred hHHHHhhh-----cceeEEEecccCCC
Q 007422 190 SDAIKISR-----ERTFGVLTKIDLMD 211 (604)
Q Consensus 190 ~~~l~l~~-----~r~i~VltK~D~~~ 211 (604)
..|+...+ .++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCCCCCEEEEEECccccc
Confidence 23333332 68899999999854
No 189
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2e-10 Score=106.34 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-..|+++|+.|+|||||+-...-.+|-+. ..++.-....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~---------------------------------------- 43 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFL---------------------------------------- 43 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEE----------------------------------------
Confidence 35799999999999999999998887322 1111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~~ 191 (604)
...+.+. .....+.||||.|..+. ..+..-|+++++++|+|.+-.+.+ .....
T Consensus 44 -----------tktv~~~-~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AAivvYDit~~~SF~~aK~ 98 (200)
T KOG0092|consen 44 -----------TKTVTVD-DNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAAIVVYDITDEESFEKAKN 98 (200)
T ss_pred -----------EEEEEeC-CcEEEEEEEEcCCcccc-------------cccccceecCCcEEEEEEecccHHHHHHHHH
Confidence 0111111 11235779999998775 556778999999999987443322 11122
Q ss_pred HHHhhh----c--ceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHH
Q 007422 192 AIKISR----E--RTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREY 258 (604)
Q Consensus 192 ~l~l~~----~--r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~f 258 (604)
+++..+ . -+.+|.||+|+.+... .+.+.-. .....++-|+..++.++.++++++..+....++..+
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~-yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQA-YAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHH-HHHhcCCEEEEEecccccCHHHHHHHHHHhccCccc
Confidence 222222 2 2345899999998433 2222211 112345679999999999999888877766655544
No 190
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.05 E-value=7.6e-10 Score=105.85 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|||+.++|||||++.+.+..| +.... +|-...
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~~----------------------------------------- 41 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFEN----------------------------------------- 41 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceeee-----------------------------------------
Confidence 35799999999999999999998875 33221 111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--h
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--S 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~ 190 (604)
+ ...+.+. .....+.||||+|-... ..+...|++++|++|+|++..+.+ +.. .
T Consensus 42 -------~---~~~~~~~-~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~ 97 (182)
T cd04172 42 -------Y---TASFEID-TQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 97 (182)
T ss_pred -------e---EEEEEEC-CEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 0 0011111 11236889999996442 456678999999999988765432 222 2
Q ss_pred HHHHhhh-----cceeEEEecccCCCCCCCHHH----------HHhCC--ccccC-CCEEEEEeCChhh-hhccccH
Q 007422 191 DAIKISR-----ERTFGVLTKIDLMDKGTDAAD----------ILEGK--SYRLK-FPWIGVVNRSQAD-INKNVDM 248 (604)
Q Consensus 191 ~~l~l~~-----~r~i~VltK~D~~~~~~~~~~----------~l~~~--~~~l~-~g~~~v~~~s~~~-i~~~~~~ 248 (604)
.++...+ .++++|.||+|+.+....... .-++. ....+ .+|+.+++.++.+ +++.+..
T Consensus 98 ~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 98 KWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 3333322 789999999998542110000 00111 12234 3688888888876 7765543
No 191
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=9.5e-10 Score=106.05 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=90.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
..|+|+|+.++|||||+..+.+..| |... .||.-.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 4799999999999999999998765 3221 111100
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--H
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--D 191 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~ 191 (604)
.+ ...+.+. .....+.||||||-... +.+...|++++|++|+|++..+.+ +... .
T Consensus 39 -----~~---~~~~~~~-~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 39 -----NY---SAQTAVD-GRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred -----ee---EEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0001111 11236889999997553 556778999999999988655532 2211 1
Q ss_pred HHHhh-----hcceeEEEecccCCCCCCCHHHHHh----------CC--ccccC-CCEEEEEeCChhhhhccccHHHH
Q 007422 192 AIKIS-----RERTFGVLTKIDLMDKGTDAADILE----------GK--SYRLK-FPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 192 ~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l~----------~~--~~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+.... ..|+++|.||.|+.+.......+.. +. ....+ .+|+.+++.++.++++.+..+..
T Consensus 97 w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 97 WHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred HHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 22222 1789999999998653221111100 00 11233 46889999888888877765553
No 192
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.04 E-value=7.3e-10 Score=107.53 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=68.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.||||||.... ..+...|++++|++|+|++..+.+ +. ...++.... .|+++|.||+|+
T Consensus 45 ~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 45 RFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEECCCchhh-------------hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 6889999997553 567778999999999988665532 11 112333222 689999999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
......... +. .....+..|+.+++.++.++++.+..+.....
T Consensus 112 ~~~~v~~~~-~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 112 KDRKVKAKS-IT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred ccccCCHHH-HH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 643221111 11 11223467999999999999988887765543
No 193
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=7.1e-10 Score=105.69 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|+++|+.++|||||++++.+..| |.... ||...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-----~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-----PTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-----CceEE----------------------------------------
Confidence 699999999999999999998875 43321 11100
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~ 192 (604)
.+ ...+.+.+ ....+.||||||.... ..+...|++++|++|+|++..+.+ +.. ..+
T Consensus 37 ----~~---~~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 37 ----NY---TASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ----EE---EEEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 00 00111211 1236889999996443 344557899999999988665432 221 233
Q ss_pred HHhhh-----cceeEEEecccCCC
Q 007422 193 IKISR-----ERTFGVLTKIDLMD 211 (604)
Q Consensus 193 l~l~~-----~r~i~VltK~D~~~ 211 (604)
....+ .++++|.||+|+.+
T Consensus 96 ~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCCCCCEEEEEEChhhhc
Confidence 33222 78999999999864
No 194
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.03 E-value=5.8e-10 Score=103.98 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=89.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|+|||+.++|||||++.+.+..+ |....+ |-.. ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~-t~~~-~~~---------------------------------------- 37 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIP-TIGI-DSY---------------------------------------- 37 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSET-TSSE-EEE----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccc-cccc-ccc----------------------------------------
Confidence 489999999999999999998875 333221 2100 000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 193 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l 193 (604)
...+.+. .....+.|+|+||.... ..+...+++++|++|+|.+..+.+ +. ...++
T Consensus 38 ---------~~~~~~~-~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 38 ---------SKEVSID-GKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp ---------EEEEEET-TEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred ---------ccccccc-ccccccccccccccccc-------------ccccccccccccccccccccccccccccccccc
Confidence 0011111 11126889999997543 445567899999999987654432 11 11233
Q ss_pred Hhhh------cceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 194 KISR------ERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 194 ~l~~------~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.... .++++|.||.|+.+... ...+. .......+.+|+.+++..+.++.+.+..+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEA-QEFAKELGVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHH-HHHHHHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHH-HHHHHHhCCEEEEEECCCCCCHHHHHHHH
Confidence 2222 68899999999886332 11111 11122445789999998888877655543
No 195
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.03 E-value=1.4e-09 Score=108.49 Aligned_cols=63 Identities=25% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.+|||||..+. ...+..+++.+|++|+|++..... ......+..+. .|.++|+||+|+..
T Consensus 64 ~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 64 TKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 47999999999654 344677889999999987654432 12223333333 89999999999874
No 196
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.02 E-value=6.5e-10 Score=107.40 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh---cc-eeEEEecc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR---ER-TFGVLTKI 207 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r-~i~VltK~ 207 (604)
+..+++|+||||+.+. ...+...+..+|+++++|++.. +.. +...+..+. .+ .|+|+||+
T Consensus 63 ~~~~i~~iDtPG~~~~-------------~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 63 ANRHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVFLNKA 128 (195)
T ss_pred CCeEEEEEECcCHHHH-------------HHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3447899999997532 2223556778999988776433 332 223344433 44 78999999
Q ss_pred cCCCC
Q 007422 208 DLMDK 212 (604)
Q Consensus 208 D~~~~ 212 (604)
|++++
T Consensus 129 D~~~~ 133 (195)
T cd01884 129 DMVDD 133 (195)
T ss_pred CCCCc
Confidence 99753
No 197
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.2e-10 Score=104.21 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=102.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
+..+..|++||+.++|||+++-.+....|-+ ....++-
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-------~~~sTiG----------------------------------- 46 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-------SFISTIG----------------------------------- 46 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC-------CccceEE-----------------------------------
Confidence 4578899999999999999999998876611 1111111
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA- 188 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~- 188 (604)
+....-.+.+.+ ....|.+|||.|-.+. +.++.+|++.++.|+||++-.+.. +.
T Consensus 47 ----------IDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 47 ----------IDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred ----------EEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 111111111212 1236899999998765 889999999999999998655531 22
Q ss_pred hhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 189 TSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 189 ~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
...|++..+ .+.++|.||+|+.++..-..+.-+.....++..|+.+++.++.++++.+..+.+...
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 223444444 789999999999875432222211122345667999999999888876665554433
No 198
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.02 E-value=1.7e-09 Score=121.31 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=94.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.-.|++||+.++|||||+++|+... +..++... +..+.|..... +
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~---------------------~~~~~D~~~~E--------r 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM---------------------REQVLDSMDLE--------R 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc---------------------cccccCCChHH--------H
Confidence 3479999999999999999998743 22221100 00111111111 1
Q ss_pred hcCCCCcccCccEEEEEec--CCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 114 ETGRTKQISSVPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~--~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
. .+.++....+.+.+.. .....+.||||||..+. ...+..+++.+|++|+|++..+.. ..+.
T Consensus 48 e--rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVvDat~g~~~qt~ 112 (595)
T TIGR01393 48 E--RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDAAQGIEAQTL 112 (595)
T ss_pred h--cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEecCCCCCCHhHH
Confidence 1 1223333444444432 22246899999999764 445678899999999987654421 1121
Q ss_pred HHHHhh---hcceeEEEecccCCCCCCC-HHHHHhCCccccCC---CEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIKIS---RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~l~---~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
..+..+ ..++++|+||+|+.+...+ ..+.+. ..++. .++.+++.++.++++++..+...
T Consensus 113 ~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~---~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 113 ANVYLALENDLEIIPVINKIDLPSADPERVKKEIE---EVIGLDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred HHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHH---HHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 222222 2789999999998643211 111111 11222 37889999998888877766543
No 199
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=1.5e-09 Score=112.25 Aligned_cols=110 Identities=22% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcC
Q 007422 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (604)
|++||.+|+|||||+|+|++..+-+.....||+.|+.-...-... .+...+ +....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~----------~~~~r~--------------~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVE----------CPCKEL--------------GVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecC----------CCchhh--------------hhhhc
Confidence 589999999999999999998864334446888886532110000 000000 00000
Q ss_pred CCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007422 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (604)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a 183 (604)
...+. .+.+.....+.++||||+...+.. ...+.+...++++++|++++|+...
T Consensus 57 ~~~~~-------~~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYGK-------CIDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ccccc-------cccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00000 011112235899999999764322 2234455677899999999988654
No 200
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.01 E-value=2.2e-09 Score=108.89 Aligned_cols=132 Identities=15% Similarity=0.270 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-.|+++|.+++|||||+|+|+... +...+.+.+-. ....+....|+..... .
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~v~~--------------~~~~~~t~~D~~~~e~--------~ 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGAVKA--------------RKSRKHATSDWMEIEK--------Q 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCceecc--------------cccCCCccCCCcHHHH--------h
Confidence 359999999999999999998643 21222211000 0001112233322211 1
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAI 193 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l 193 (604)
++..+......+++ +...+.||||||..+. ...+..+++.+|++|+|+++.+. ...+...+
T Consensus 55 --rg~si~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~ 116 (267)
T cd04169 55 --RGISVTSSVMQFEY---RDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLF 116 (267)
T ss_pred --CCCCeEEEEEEEee---CCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHH
Confidence 12222223333332 2347899999998653 23356778899999998765442 22223344
Q ss_pred Hhhh---cceeEEEecccCCCC
Q 007422 194 KISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 194 ~l~~---~r~i~VltK~D~~~~ 212 (604)
+.+. .|+++++||+|+...
T Consensus 117 ~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 117 EVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHhcCCCEEEEEECCccCCC
Confidence 4433 889999999997654
No 201
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.98 E-value=3.3e-09 Score=103.31 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCCc--chh-hHH----HH---h--hhcceeEE
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQD--LAT-SDA----IK---I--SRERTFGV 203 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~-d~iIl~v~~a~~d--~~~-~~~----l~---l--~~~r~i~V 203 (604)
.+.||||||..+. +.+...|++.+ +++|+++++.+.. +.. .+. +. . ...|+++|
T Consensus 49 ~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 49 KFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred eEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 6889999997653 56667888888 9999998776642 111 111 11 1 13899999
Q ss_pred EecccCCCCC
Q 007422 204 LTKIDLMDKG 213 (604)
Q Consensus 204 ltK~D~~~~~ 213 (604)
+||.|+....
T Consensus 116 ~NK~Dl~~a~ 125 (203)
T cd04105 116 CNKQDLFTAK 125 (203)
T ss_pred ecchhhcccC
Confidence 9999987543
No 202
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.98 E-value=4.5e-09 Score=103.52 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|+|||+.++|||||++++++..| |....+ |-...
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~~------------------------------------------- 37 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFEN------------------------------------------- 37 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-ccccc-------------------------------------------
Confidence 689999999999999999998775 433221 11110
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~ 192 (604)
+ ...+.+.+ ....|.||||||-... ..+...|++.+|++|+|++..+.+ +.. ..+
T Consensus 38 -----~---~~~~~~~~-~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 38 -----Y---TASFEIDK-RRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred -----e---EEEEEECC-EEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00111111 1236889999996543 445567899999999998765542 111 112
Q ss_pred HHhhh-----cceeEEEecccCCCC
Q 007422 193 IKISR-----ERTFGVLTKIDLMDK 212 (604)
Q Consensus 193 l~l~~-----~r~i~VltK~D~~~~ 212 (604)
....+ .|+++|.||+|+.+.
T Consensus 96 ~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCCCCCEEEEEECcccccc
Confidence 22221 789999999998653
No 203
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.98 E-value=3.6e-09 Score=118.72 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..-.|++||..++|||||+++|+... |..++.. .+..+.|.....
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~---------------------~~~~~lD~~~~E-------- 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSERE---------------------MKAQVLDSMDLE-------- 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc---------------------cccccccCchHH--------
Confidence 45679999999999999999998642 1111110 001111111111
Q ss_pred hhcCCCCcccCccEEEEEecCC--CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh
Q 007422 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~ 189 (604)
+. .+..+....+.+.+..++ ...+.||||||..++ ...+..+++.+|++||+++..+.. ..+
T Consensus 51 re--rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVDas~gv~~qt 115 (600)
T PRK05433 51 RE--RGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDASQGVEAQT 115 (600)
T ss_pred hh--cCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEECCCCCCHHH
Confidence 11 222333444455443222 346899999999764 345678899999999887665421 122
Q ss_pred hHHHHhh---hcceeEEEecccCCCCCCC-HHHHHhCCccccCC---CEEEEEeCChhhhhccccHHHHHH
Q 007422 190 SDAIKIS---RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 190 ~~~l~l~---~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
...+..+ ..++++|+||+|+.+...+ ..+.+.. .++. .++.+++.++.++++++..+....
T Consensus 116 ~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 116 LANVYLALENDLEIIPVLNKIDLPAADPERVKQEIED---VIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH---HhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 2222222 2789999999998643211 1111111 1222 378899999999888777665443
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.98 E-value=5.7e-09 Score=113.34 Aligned_cols=99 Identities=17% Similarity=0.339 Sum_probs=56.6
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cch--hhHHHHhhh----cceeEEEecc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLA--TSDAIKISR----ERTFGVLTKI 207 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~--~~~~l~l~~----~r~i~VltK~ 207 (604)
...++||||||..+.. ..+ ...+..+|++|+|++..+. +.. +.+.+.++. .++++|+||+
T Consensus 83 ~~~i~liDtpG~~~~~------------~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 83 KYYFTIVDCPGHRDFV------------KNM-ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred CeEEEEEECCCcccch------------hhH-hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 3479999999974421 222 3446789999998765431 222 222333332 4689999999
Q ss_pred cCCCCCCCH--------HHHHhCCccc-cCCCEEEEEeCChhhhhccc
Q 007422 208 DLMDKGTDA--------ADILEGKSYR-LKFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 208 D~~~~~~~~--------~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~ 246 (604)
|+.+...+. .+++...... ....++.+++.++.++++..
T Consensus 150 Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 150 DAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 997532211 1111111111 12357888988888776543
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.97 E-value=3.6e-09 Score=118.33 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhh---hcceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKIS---RERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~---~~r~i~VltK~D~~ 210 (604)
+.++||||||...+ ..+...++..+|++|+|++..+. ...+.+.+.++ +.|+++|+||+|+.
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 35899999998653 44555678899999998765431 11222233333 38899999999986
No 206
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.97 E-value=2e-09 Score=120.88 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hHHHHhhh---cc-eeEEEeccc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISR---ER-TFGVLTKID 208 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~~l~l~~---~r-~i~VltK~D 208 (604)
...++||||||..+ .+.++ ...+..+|++++||+ ++.+... .+.+.++. .+ .|+|+||+|
T Consensus 50 g~~i~~IDtPGhe~------------fi~~m-~~g~~~~D~~lLVVd-a~eg~~~qT~ehl~il~~lgi~~iIVVlNKiD 115 (614)
T PRK10512 50 GRVLGFIDVPGHEK------------FLSNM-LAGVGGIDHALLVVA-CDDGVMAQTREHLAILQLTGNPMLTVALTKAD 115 (614)
T ss_pred CcEEEEEECCCHHH------------HHHHH-HHHhhcCCEEEEEEE-CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 33579999999743 22343 456788999988775 4433322 23333333 44 579999999
Q ss_pred CCCCCC--C----HHHHHhCCcccc-CCCEEEEEeCChhhhhccccHHHHHH
Q 007422 209 LMDKGT--D----AADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 209 ~~~~~~--~----~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+.++.. . ..+.+.+ ..+ ...++.+++.++.+++++...+....
T Consensus 116 lv~~~~~~~v~~ei~~~l~~--~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 116 RVDEARIAEVRRQVKAVLRE--YGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred cCCHHHHHHHHHHHHHHHHh--cCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 986421 0 1111111 111 24689999999999998888776543
No 207
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.95 E-value=3.4e-09 Score=107.82 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhh---hcceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKIS---RERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~---~~r~i~VltK~D~~~ 211 (604)
..+++|||||..+. ...+..++..+|++++++.+.... ..+...+... +.|.++|+||+|+..
T Consensus 64 ~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 64 HKINLIDTPGYADF-------------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred EEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 47899999998543 345667888999999887665432 2223333332 388999999999875
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 131 ~ 131 (268)
T cd04170 131 A 131 (268)
T ss_pred C
Confidence 4
No 208
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.94 E-value=4.2e-09 Score=103.64 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
..+.||||||..+. ...+..+++.+|++++|++..... ..+...++.+. .|.++|+||+|+.
T Consensus 73 ~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 46899999999764 445678899999999987654432 22233334332 7899999999986
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.93 E-value=1.3e-09 Score=107.43 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=56.2
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC------cc--hhhHHHHhh---h-cceeE
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ------DL--ATSDAIKIS---R-ERTFG 202 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~------d~--~~~~~l~l~---~-~r~i~ 202 (604)
...+++|||||..+. ...+..++..+|++|+||++... +. .....+..+ . .|+++
T Consensus 76 ~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii 142 (219)
T cd01883 76 KYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIV 142 (219)
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEE
Confidence 347999999997442 12234567889999998876542 11 112222222 2 67889
Q ss_pred EEecccCCCC---CCCHHHHHh---C--Ccccc---CCCEEEEEeCChhhhh
Q 007422 203 VLTKIDLMDK---GTDAADILE---G--KSYRL---KFPWIGVVNRSQADIN 243 (604)
Q Consensus 203 VltK~D~~~~---~~~~~~~l~---~--~~~~l---~~g~~~v~~~s~~~i~ 243 (604)
|+||+|+... .....++.. . ..... ...++.+++.++.+++
T Consensus 143 vvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 143 AVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999999842 111111111 0 01111 2458889999888876
No 210
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.92 E-value=5e-09 Score=102.83 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhh---hcceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKIS---RERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~---~~r~i~VltK~D~~ 210 (604)
..+.+|||||..+. ...+..++..+|+++++++..... ......++.+ +.+.++|+||+|++
T Consensus 71 ~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 46899999998654 345678889999999988765432 1222223333 27899999999986
No 211
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.91 E-value=4.3e-09 Score=100.00 Aligned_cols=101 Identities=17% Similarity=0.331 Sum_probs=62.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh---HHHHhh------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKIS------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~---~~l~l~------~~r~i~VltK~ 207 (604)
.++++|++|-... +.++..|++++|++|+||++++.+.-.. ....+. ..|+++++||.
T Consensus 59 ~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~ 125 (175)
T PF00025_consen 59 SLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQ 125 (175)
T ss_dssp EEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEEST
T ss_pred EEEEEeccccccc-------------cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccc
Confidence 6899999997553 5678899999999999998776432111 111111 18999999999
Q ss_pred cCCCCCC--CHHHHHhCCccccCCCE--EEEEeCChhhhhccccHHH
Q 007422 208 DLMDKGT--DAADILEGKSYRLKFPW--IGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 208 D~~~~~~--~~~~~l~~~~~~l~~g~--~~v~~~s~~~i~~~~~~~~ 250 (604)
|..+... +..+.+.-.....+..| +..++.+++++.+.+.++.
T Consensus 126 D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 126 DLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp TSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred cccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHH
Confidence 9876433 12222221122212344 4556667777777665543
No 212
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=6e-09 Score=105.04 Aligned_cols=156 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc--ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG--SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~--~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-|.+||-|||||||||++++..+ |.- ...+|-.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn----------------------------------------- 197 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN----------------------------------------- 197 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc-----------------------------------------
Confidence 47799999999999999999876 332 224555551
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc----hh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL----AT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~----~~ 189 (604)
-| .+.+ .....+++-|.||++..+..+-. + -.-....|+++..++.+++.+..+- ..
T Consensus 198 -LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G~G--L----G~~FLrHIERt~vL~hviD~s~~~~~dp~~~ 258 (369)
T COG0536 198 -LG----------VVRV--DGGESFVVADIPGLIEGASEGVG--L----GLRFLRHIERTRVLLHVIDLSPIDGRDPIED 258 (369)
T ss_pred -cc----------EEEe--cCCCcEEEecCcccccccccCCC--c----cHHHHHHHHhhheeEEEEecCcccCCCHHHH
Confidence 11 1112 23346899999999987765422 1 2234567788999999887665542 11
Q ss_pred hHH---------HHhhhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEE--E-EEeCChhhhhccccHHHHHHHH
Q 007422 190 SDA---------IKISRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWI--G-VVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 190 ~~~---------l~l~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~--~-v~~~s~~~i~~~~~~~~~~~~e 255 (604)
-.. ..+..++.++|+||+|.....+......... ....+|. . |++.+.++++.+...+.....+
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l--~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKAL--AEALGWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHH--HHhcCCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 111 1122299999999999665544332222111 1111221 1 6666666666655554444333
No 213
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.90 E-value=1.5e-08 Score=98.43 Aligned_cols=90 Identities=16% Similarity=0.056 Sum_probs=55.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhh------------------
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKIS------------------ 196 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~------------------ 196 (604)
.+.||||+|-... ..+...|++++|++|+|++..+.+. ....|+...
T Consensus 55 ~l~IwDtaG~e~~-------------~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 55 FVELWDVGGSESV-------------KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred EEEEEecCCchhH-------------HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 5789999997543 6677889999999999987655421 112232211
Q ss_pred -------hcceeEEEecccCCCCCC-CHHHHH---hCCccccCCCEEEEEeCCh
Q 007422 197 -------RERTFGVLTKIDLMDKGT-DAADIL---EGKSYRLKFPWIGVVNRSQ 239 (604)
Q Consensus 197 -------~~r~i~VltK~D~~~~~~-~~~~~l---~~~~~~l~~g~~~v~~~s~ 239 (604)
..|+++|.||.|+.++.. .....+ .+....++...+.+.|...
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred ccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 158999999999976431 111111 1112345556666666544
No 214
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.89 E-value=6e-09 Score=100.06 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=58.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--hHHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~--~~~l~l~~-----~r~i~VltK~D 208 (604)
.+.++||||...... +...+++.+|+++++.+..+.+ +.. ..++...+ .|+++|.||+|
T Consensus 50 ~l~i~Dt~g~~~~~~-------------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 50 QLALWDTAGQEEYER-------------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEECCCChhccc-------------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 578999999754321 1223668899998876554332 111 12333322 78999999999
Q ss_pred CCCCCCCH--------HHHHhCC--ccccC-CCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGTDA--------ADILEGK--SYRLK-FPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~~~--------~~~l~~~--~~~l~-~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.+..... ....... ....+ .+|+.+++.++.++++++..+.
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 117 LRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 85421100 0000000 11223 3688888888888887766554
No 215
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.87 E-value=8.1e-09 Score=99.89 Aligned_cols=97 Identities=20% Similarity=0.121 Sum_probs=57.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--HHHHhhh-----cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKISR-----ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~--~~l~l~~-----~r~i~VltK~D 208 (604)
.+.||||||.... +...|++++|++|+|.+..+.+ +... .++...+ .|+++|.||+|
T Consensus 67 ~l~iwDTaG~~~~---------------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 131 (195)
T cd01873 67 SLRLWDTFGDHDK---------------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLD 131 (195)
T ss_pred EEEEEeCCCChhh---------------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 6889999997431 1235889999999988765532 2222 2333322 68999999999
Q ss_pred CCCCCC-----------------CH--HHHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 209 LMDKGT-----------------DA--ADILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 209 ~~~~~~-----------------~~--~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
+.+... .. .+.........+.+|+.+++.++.++++.+..
T Consensus 132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred ccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHH
Confidence 864210 00 00001111223456888888887777665543
No 216
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.86 E-value=6.2e-09 Score=89.65 Aligned_cols=137 Identities=23% Similarity=0.270 Sum_probs=82.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-+|++||..|+||+||.++|-|.+.+++.+..++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve---------------------------------------------- 35 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVE---------------------------------------------- 35 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccceee----------------------------------------------
Confidence 3799999999999999999999998777653211
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--HH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~--~~ 192 (604)
+.++ -.|||||-.-.. ...-....-....+|.|+++ .+++...+.- ..
T Consensus 36 ---------------~~d~-----~~IDTPGEy~~~---------~~~Y~aL~tt~~dadvi~~v-~~and~~s~f~p~f 85 (148)
T COG4917 36 ---------------FNDK-----GDIDTPGEYFEH---------PRWYHALITTLQDADVIIYV-HAANDPESRFPPGF 85 (148)
T ss_pred ---------------ccCc-----cccCCchhhhhh---------hHHHHHHHHHhhccceeeee-ecccCccccCCccc
Confidence 1111 259999975421 11222233445678888775 4555433221 22
Q ss_pred HHhhhcceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 193 IKISRERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l~l~~~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+....+++|||+||.|+.+.... ....|. ..-....|.++....+++++++..+.
T Consensus 86 ~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~---eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 86 LDIGVKKVIGVVTKADLAEDADISLVKRWLR---EAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred ccccccceEEEEecccccchHhHHHHHHHHH---HcCCcceEEEeccCcccHHHHHHHHH
Confidence 22333779999999999853221 122221 11134567777766677766665544
No 217
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=8e-09 Score=111.26 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=59.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhhHHHHhhh----cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISR----ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~~~l~l~~----~r~i~VltK~D~ 209 (604)
..++||||||..+. ...+..++..+|++++++++.... ..+.+.+..+. .+.++|+||+|+
T Consensus 80 ~~i~liDtPGh~~f-------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 80 RRVSFVDAPGHETL-------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 36899999997442 223455667899998887655321 22223333333 568999999999
Q ss_pred CCCCCC---HHH---HHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 210 MDKGTD---AAD---ILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 210 ~~~~~~---~~~---~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.+.... ..+ ++.. .......++.+++.++.+++.++..+.
T Consensus 147 ~~~~~~~~~~~~i~~~l~~-~~~~~~~ii~vSA~~g~gi~~L~e~L~ 192 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKG-TVAENAPIIPVSALHNANIDALLEAIE 192 (406)
T ss_pred CCHHHHHHHHHHHHhhhhh-cccCCCeEEEEECCCCCChHHHHHHHH
Confidence 864321 111 1111 011234578888888877766555544
No 218
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.85 E-value=8.3e-09 Score=104.29 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=62.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcC
Q 007422 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 116 (604)
|++||.||||||||+|+|+|.+.-+.....||+-|..-...- ++ .. +..+. ...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v-~d-------------~r---~~~l~--------~~~~ 55 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPV-PD-------------ER---LDKLA--------EIVK 55 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEe-cc-------------ch---hhhHH--------HHhC
Confidence 589999999999999999999874444457888875533211 00 00 00000 0000
Q ss_pred CCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007422 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (604)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~ 182 (604)
. +.+ + ..++.++|+||+...... ...+.....+.++++|++++||..
T Consensus 56 ~-~k~--------~----~~~i~lvD~pGl~~~a~~------~~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 56 P-KKI--------V----PATIEFVDIAGLVKGASK------GEGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred C-cee--------e----eeEEEEEECCCcCCCCch------hhHHHHHHHHHHHhCCEEEEEEeC
Confidence 0 000 0 125899999999864332 223444566778899999998754
No 219
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.85 E-value=8.8e-09 Score=110.88 Aligned_cols=97 Identities=14% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh----cceeEEEeccc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR----ERTFGVLTKID 208 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~----~r~i~VltK~D 208 (604)
...++||||||..+. +.++. ..+..+|++|+||++ ..+.. +.+.+.++. .+.|+|+||+|
T Consensus 79 ~~~~~liDtPGh~~f------------~~~~~-~~~~~aD~allVVda-~~G~~~qt~~~~~~~~~~~~~~iivviNK~D 144 (406)
T TIGR02034 79 KRKFIVADTPGHEQY------------TRNMA-TGASTADLAVLLVDA-RKGVLEQTRRHSYIASLLGIRHVVLAVNKMD 144 (406)
T ss_pred CeEEEEEeCCCHHHH------------HHHHH-HHHhhCCEEEEEEEC-CCCCccccHHHHHHHHHcCCCcEEEEEEecc
Confidence 347999999996442 23343 457899999887764 33332 222233332 56888999999
Q ss_pred CCCCCCCHHH-HHhC-----Ccccc-CCCEEEEEeCChhhhhcc
Q 007422 209 LMDKGTDAAD-ILEG-----KSYRL-KFPWIGVVNRSQADINKN 245 (604)
Q Consensus 209 ~~~~~~~~~~-~l~~-----~~~~l-~~g~~~v~~~s~~~i~~~ 245 (604)
+.+...+..+ +... ..... ...++.+++.++.+++..
T Consensus 145 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 145 LVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 9854322211 1110 00111 235889999988877643
No 220
>CHL00071 tufA elongation factor Tu
Probab=98.85 E-value=9.1e-09 Score=110.92 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh---cc-eeEEEecc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR---ER-TFGVLTKI 207 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r-~i~VltK~ 207 (604)
+..+++|+||||+.+ .+..+ ...+..+|++++++++. .... +.+.+.++. .| .|+|+||+
T Consensus 73 ~~~~~~~iDtPGh~~------------~~~~~-~~~~~~~D~~ilVvda~-~g~~~qt~~~~~~~~~~g~~~iIvvvNK~ 138 (409)
T CHL00071 73 ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVSAA-DGPMPQTKEHILLAKQVGVPNIVVFLNKE 138 (409)
T ss_pred CCeEEEEEECCChHH------------HHHHH-HHHHHhCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 344789999999642 33444 34567899998877644 3332 223344443 55 77899999
Q ss_pred cCCCCC
Q 007422 208 DLMDKG 213 (604)
Q Consensus 208 D~~~~~ 213 (604)
|+.+..
T Consensus 139 D~~~~~ 144 (409)
T CHL00071 139 DQVDDE 144 (409)
T ss_pred CCCCHH
Confidence 998643
No 221
>PTZ00258 GTP-binding protein; Provisional
Probab=98.85 E-value=1.3e-08 Score=107.40 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+-.+|++||.||+|||||+|+|+|..........||+-|..-.....+. .+ ..+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~--------------r~---~~l~-------- 74 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDE--------------RF---DWLC-------- 74 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccc--------------hh---hHHH--------
Confidence 5678999999999999999999998864444557888886654321100 00 0000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~ 182 (604)
...+..+ ....++.|+||||+...... ...+.+.+...++++|++++||..
T Consensus 75 ~~~~~~~-------------~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 75 KHFKPKS-------------IVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred HHcCCcc-------------cCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEeC
Confidence 0111000 00126899999999864432 223445566788999999998864
No 222
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=107.13 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=77.2
Q ss_pred CcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHH
Q 007422 25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVR 104 (604)
Q Consensus 25 ~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 104 (604)
.++|+++..-++++|+|-+|+||||++|-++..+. . +...|.+..
T Consensus 159 ~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----e-vqpYaFTTk----------------------------- 203 (620)
T KOG1490|consen 159 SRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----E-VQPYAFTTK----------------------------- 203 (620)
T ss_pred hcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----c-cCCcccccc-----------------------------
Confidence 47888888999999999999999999999887664 1 111111111
Q ss_pred HHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 007422 105 KEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (604)
Q Consensus 105 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~ 184 (604)
.-..| -.......+.++||||+.+.+.. ....++......+.+-.+.+|.+.+-+
T Consensus 204 -------sL~vG-------------H~dykYlrwQViDTPGILD~plE-----drN~IEmqsITALAHLraaVLYfmDLS 258 (620)
T KOG1490|consen 204 -------LLLVG-------------HLDYKYLRWQVIDTPGILDRPEE-----DRNIIEMQIITALAHLRSAVLYFMDLS 258 (620)
T ss_pred -------hhhhh-------------hhhhheeeeeecCCccccCcchh-----hhhHHHHHHHHHHHHhhhhheeeeech
Confidence 00111 11112236889999999886554 233334333344444333444443322
Q ss_pred C--cchhhHHHHhhh--------cceeEEEecccCCCCCC
Q 007422 185 Q--DLATSDAIKISR--------ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 185 ~--d~~~~~~l~l~~--------~r~i~VltK~D~~~~~~ 214 (604)
. +.+..+.+++.. +++|+|+||+|.+.+..
T Consensus 259 e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 259 EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 1 333333333332 88999999999997653
No 223
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.84 E-value=2.3e-08 Score=109.50 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hHHHHhh---h-cceeEEEecc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKIS---R-ERTFGVLTKI 207 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~~l~l~---~-~r~i~VltK~ 207 (604)
+..+++||||||..+ .+.+++.. +..+|++++||++ +..... .+.+.++ + .++|+|+||+
T Consensus 105 ~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~allVVDa-~~G~~~qt~~~~~l~~~lg~~~iIvvvNKi 170 (474)
T PRK05124 105 EKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAILLIDA-RKGVLDQTRRHSFIATLLGIKHLVVAVNKM 170 (474)
T ss_pred CCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEEEEEC-CCCccccchHHHHHHHHhCCCceEEEEEee
Confidence 345899999999532 22444444 6899999887754 333221 2222222 2 5788999999
Q ss_pred cCCCCCCCHH-HH---Hh----CCccccCCCEEEEEeCChhhhhcc
Q 007422 208 DLMDKGTDAA-DI---LE----GKSYRLKFPWIGVVNRSQADINKN 245 (604)
Q Consensus 208 D~~~~~~~~~-~~---l~----~~~~~l~~g~~~v~~~s~~~i~~~ 245 (604)
|+.+...+.. .+ +. .........++.+++.++.+++..
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9985332211 11 11 000011356888999888887654
No 224
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.83 E-value=5e-08 Score=101.17 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-CcchhhH--HHHhhhcceeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATSD--AIKISRERTFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~-~d~~~~~--~l~l~~~r~i~VltK~D~~~~ 212 (604)
.++.||||+|+..... . ....+|.+++++.+.. .++.... .+..+ -++|+||+|+.+.
T Consensus 149 ~d~viieT~Gv~qs~~------~----------i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a---DIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSET------A----------VAGMVDFFLLLQLPGAGDELQGIKKGIMELA---DLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchh------H----------HHHhCCEEEEEecCCchHHHHHHHhhhhhhh---heEEeehhcccch
Confidence 4899999999974311 0 2456999888765433 2332211 22222 3899999998865
Q ss_pred CC--CHH----HHHhCCc--c-ccCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCc
Q 007422 213 GT--DAA----DILEGKS--Y-RLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYK 266 (604)
Q Consensus 213 ~~--~~~----~~l~~~~--~-~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~ 266 (604)
.. ... ..+.... . ...-+++.+++.++.+++++.+.+....+ +++....++
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~ 269 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFA 269 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHH
Confidence 42 111 1111000 0 01135678999999999998887766544 444444333
No 225
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.83 E-value=1.2e-08 Score=95.15 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=57.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhhh-------cceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISR-------ERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~~-------~r~i~VltK~ 207 (604)
.+.++||+|... ..|.+.+|++++|++..+.+ +.. ..++.... .|+++|.||.
T Consensus 48 ~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~ 109 (158)
T cd04103 48 LLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQD 109 (158)
T ss_pred EEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHH
Confidence 588999999732 24667899999988655532 111 12222221 5889999999
Q ss_pred cCCCCCC-CH-HHHHhCCcccc-CCCEEEEEeCChhhhhccccHHH
Q 007422 208 DLMDKGT-DA-ADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 208 D~~~~~~-~~-~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
|+..... .. .+......... ...|+.+++.++.++++++..+.
T Consensus 110 Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 110 AISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred HhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHH
Confidence 9853211 11 11100001122 35799999999998887765443
No 226
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.81 E-value=1.9e-08 Score=114.46 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh----cceeEEEecc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR----ERTFGVLTKI 207 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~----~r~i~VltK~ 207 (604)
+..+++||||||..+ .+..+. ..+..+|+++|||+. ..... +.+.+.++. .+.|+|+||+
T Consensus 102 ~~~~~~liDtPG~~~------------f~~~~~-~~~~~aD~~llVvda-~~g~~~~t~e~~~~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ------------YTRNMV-TGASTADLAIILVDA-RKGVLTQTRRHSFIASLLGIRHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH------------HHHHHH-HHHHhCCEEEEEEEC-CCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence 344789999999643 223333 357899999887754 33322 222333332 5788899999
Q ss_pred cCCCCCCCH-HHHHhC-----Ccccc-CCCEEEEEeCChhhhhc
Q 007422 208 DLMDKGTDA-ADILEG-----KSYRL-KFPWIGVVNRSQADINK 244 (604)
Q Consensus 208 D~~~~~~~~-~~~l~~-----~~~~l-~~g~~~v~~~s~~~i~~ 244 (604)
|+.+...+. ..+... ..... ...++.+++.++.++++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 997532221 111110 01111 13478889888887764
No 227
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.79 E-value=4.3e-08 Score=96.29 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=74.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-+|+|+|+.|||||||++++.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 5899999999999999999999876 332221 112221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC---cchh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---DLAT 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~---d~~~ 189 (604)
........+.+|||+|.... +.+...|...+++++++++.... +...
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 00000225889999998654 67888999999999998876552 2222
Q ss_pred hHHHHhh------hcceeEEEecccCCCCCC
Q 007422 190 SDAIKIS------RERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 190 ~~~l~l~------~~r~i~VltK~D~~~~~~ 214 (604)
..+.... ..+++.|.||+|+.....
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 2232221 268999999999987653
No 228
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.5e-08 Score=89.51 Aligned_cols=116 Identities=20% Similarity=0.333 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-|..|++||..|+||+-|+..++.. ++|-|.|.+-..-.-|.
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmik------------------------------------- 47 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIK------------------------------------- 47 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEE-------------------------------------
Confidence 5789999999999999999999976 46888764322221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-c-chhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-D-LATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d-~~~~ 190 (604)
.+++.+.. ..|.+|||.|-.++ +.++.+|.+.++++||+.+-.-. . --..
T Consensus 48 --------------tvev~gek-iklqiwdtagqerf-------------rsitqsyyrsahalilvydiscqpsfdclp 99 (213)
T KOG0095|consen 48 --------------TVEVNGEK-IKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPSFDCLP 99 (213)
T ss_pred --------------EEEECCeE-EEEEEeeccchHHH-------------HHHHHHHhhhcceEEEEEecccCcchhhhH
Confidence 12222222 26889999997654 88999999999999998743322 2 2234
Q ss_pred HHHHhhh------cceeEEEecccCCCCCC
Q 007422 191 DAIKISR------ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 191 ~~l~l~~------~r~i~VltK~D~~~~~~ 214 (604)
+|++... .-.|+|.||+|+.++.+
T Consensus 100 ewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 100 EWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred HHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 6665544 44678999999887643
No 229
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.79 E-value=2.9e-08 Score=103.65 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=63.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|++||.||+|||||+|+|+|.+........||+-|..-...-.+. . ++.+. ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~--------------r---~~~l~--------~~ 57 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDP--------------R---LDKLA--------EI 57 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccc--------------c---chhhH--------Hh
Confidence 58999999999999999999998853333456888885433211000 0 00000 00
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~ 182 (604)
....+. + ...+.|+|+||+...... .+.+.+.....++++|++++||..
T Consensus 58 ~~p~~~---------~----~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 58 VKPKKI---------V----PATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred cCCccc---------c----CceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEEeC
Confidence 000000 0 125899999999864332 233445567788999999998754
No 230
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.77 E-value=4.2e-08 Score=96.35 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=60.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHh----hh-cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKI----SR-ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l----~~-~r~i~VltK~D~ 209 (604)
.+.++||||.... ..+...|+..++++|++++..+... .. ..++.. .. .++++|.||+|+
T Consensus 59 ~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 59 CFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred EEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccC
Confidence 5789999996432 4455678889999988875443211 10 112211 11 678889999998
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.+..... +... .....+..|+.+++.++.++++.+..+.+.
T Consensus 126 ~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 126 KDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred ccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 6532211 1111 111234568899999988887766555443
No 231
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.77 E-value=4.4e-08 Score=86.56 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc---hhhHHHHhh------hcceeEEE
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKIS------RERTFGVL 204 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~---~~~~~l~l~------~~r~i~Vl 204 (604)
+...+.++|+||-..+ +.|+..|.+..++|+++|++++.+- +.++...+. +.|.++..
T Consensus 63 gnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 3446789999997665 8999999999999999998887542 222332222 28899999
Q ss_pred ecccCCCCCCCHHHHHh--CC-ccccC-CCEEEEEeCChhhhhccccHH
Q 007422 205 TKIDLMDKGTDAADILE--GK-SYRLK-FPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 205 tK~D~~~~~~~~~~~l~--~~-~~~l~-~g~~~v~~~s~~~i~~~~~~~ 249 (604)
||.|+.+.-.. .++.. |. .+.-+ .-.|.++++...+++...+++
T Consensus 130 nK~d~~~AL~~-~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 130 NKIDLPGALSK-IALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred ccccCcccccH-HHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99998765332 22221 11 11111 235678888776666555443
No 232
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.77 E-value=9.1e-09 Score=104.78 Aligned_cols=136 Identities=26% Similarity=0.364 Sum_probs=70.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
..|+|||..|+|||||||+|++..+.+......+... .
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------------------------------------------~ 42 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------------------------------------------S 42 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S----------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccccccccccc------------------------------------------c
Confidence 3689999999999999999999887555421110000 0
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCC-CCCccHHHHHHHHHHHhhc-------------CCCeEEEEE
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIE-------------KPNCIILAI 180 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~-~q~~~~~~~i~~~~~~~i~-------------~~d~iIl~v 180 (604)
...+..+......+.- +.-..+|++|||||+.+.... .....+...+.+....|+. +.|++++++
T Consensus 43 ~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI 121 (281)
T PF00735_consen 43 ISRTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFI 121 (281)
T ss_dssp --SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE
T ss_pred cccccceeeEEEEecc-CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEE
Confidence 0000001111111110 111126999999999754221 1112344455555555554 237888888
Q ss_pred ecCCCcchhhHHHHhhh----cceeEEEecccCCCCC
Q 007422 181 SPANQDLATSDAIKISR----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 181 ~~a~~d~~~~~~l~l~~----~r~i~VltK~D~~~~~ 213 (604)
.|....+...|...+-+ .++|-|+.|+|.+.+.
T Consensus 122 ~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 122 PPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp -TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred cCCCccchHHHHHHHHHhcccccEEeEEecccccCHH
Confidence 77766666555433222 8899999999998754
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=98.76 E-value=2.9e-08 Score=106.58 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---ccee-EEEeccc
Q 007422 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTF-GVLTKID 208 (604)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i-~VltK~D 208 (604)
+..+++||||||+.+ .+.++. ..+..+|.+++++++... ...+.+.+.++. .+.+ +|+||+|
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~~-~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 73 ANRHYAHVDCPGHAD------------YVKNMI-TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CCcEEEEEECCCHHH------------HHHHHH-hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecC
Confidence 344789999999742 233443 556789999888765432 122223444443 5655 6799999
Q ss_pred CCCC
Q 007422 209 LMDK 212 (604)
Q Consensus 209 ~~~~ 212 (604)
+.++
T Consensus 140 l~~~ 143 (396)
T PRK12735 140 MVDD 143 (396)
T ss_pred Ccch
Confidence 9853
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.76 E-value=2.9e-08 Score=114.01 Aligned_cols=130 Identities=14% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+|+|..++|||||+|+|++.. +...+ . .... ++....|+....
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~-----~~~~------------~g~~~~D~~~~e-------- 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHK-I-----GEVH------------DGAATMDWMEQE-------- 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccc-c-----cccc------------CCccccCCCHHH--------
Confidence 56789999999999999999998642 11111 0 0000 011111211111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
+..| .++......++ .. ...++||||||+.+. ...+..+++.+|++|+|++.... ...+..
T Consensus 57 ~~rg--iti~~~~~~~~--~~-~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~ 118 (689)
T TIGR00484 57 KERG--ITITSAATTVF--WK-GHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLDAVGGVQPQSET 118 (689)
T ss_pred HhcC--CCEecceEEEE--EC-CeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHH
Confidence 1112 12222223333 33 347999999999763 22467888999999998865432 122223
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.+..+. .|.++|+||+|+...
T Consensus 119 ~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 119 VWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCC
Confidence 333333 799999999998854
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.76 E-value=1e-08 Score=90.45 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
+|+|+|+.|+|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 236
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.75 E-value=5.2e-08 Score=105.81 Aligned_cols=97 Identities=14% Similarity=0.345 Sum_probs=56.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--c--hhhHHHHhh---h-cceeEEEecc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--L--ATSDAIKIS---R-ERTFGVLTKI 207 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~--~~~~~l~l~---~-~r~i~VltK~ 207 (604)
..++||||||..+. +.. +..++..+|++|||++..+.+ . ...+.+.++ + .++|+|+||+
T Consensus 85 ~~i~iiDtpGh~~f------------~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRDF------------IKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHHH------------HHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 47999999995331 222 344678899999988765542 1 111222222 2 5688999999
Q ss_pred cCCCCCCCH--------HHHHhCCccc-cCCCEEEEEeCChhhhhcc
Q 007422 208 DLMDKGTDA--------ADILEGKSYR-LKFPWIGVVNRSQADINKN 245 (604)
Q Consensus 208 D~~~~~~~~--------~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~ 245 (604)
|+.+...+. .+++...... ....|+.+++.++.++.+.
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 997532211 1122111111 1246888999888877654
No 237
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.9e-08 Score=87.69 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-...|.|+|+.++||+|++-...|-.|-|.- ++.+.+.
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~af---vsTvGid--------------------------------------- 57 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAF---VSTVGID--------------------------------------- 57 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccce---eeeeeee---------------------------------------
Confidence 3448999999999999999999998873211 0000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~ 190 (604)
|....+ ..+.....+.++||.|.... +.++..|+++++.+||+.+..|.+. +.+
T Consensus 58 --------FKvKTv---yr~~kRiklQiwDTagqEry-------------rtiTTayyRgamgfiLmyDitNeeSf~svq 113 (193)
T KOG0093|consen 58 --------FKVKTV---YRSDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNSVQ 113 (193)
T ss_pred --------EEEeEe---eecccEEEEEEEecccchhh-------------hHHHHHHhhccceEEEEEecCCHHHHHHHH
Confidence 000000 11222247899999997653 7889999999999999997776542 334
Q ss_pred HHHHhhh------cceeEEEecccCCCCC
Q 007422 191 DAIKISR------ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 ~~l~l~~------~r~i~VltK~D~~~~~ 213 (604)
++....+ .++|+|.||||+-++.
T Consensus 114 dw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 114 DWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHHHheeeeccCceEEEEecccCCccce
Confidence 4544444 8999999999987654
No 238
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.74 E-value=1.6e-08 Score=90.87 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
--.+++|||+.-+||||||..++..+| |--+ -||+=. ||- .+ ...
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkf-aels-----dptvgv-----------------------dff--ar----lie 51 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTVGV-----------------------DFF--AR----LIE 51 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCccch-----------------------HHH--HH----HHh
Confidence 346899999999999999999998776 2211 121100 000 00 001
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-c-hhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~-~~~ 190 (604)
..+| ....|.||||.|-.++ +.++++|.+++-.++++.+-.|.. + ...
T Consensus 52 ~~pg-----------------~riklqlwdtagqerf-------------rsitksyyrnsvgvllvyditnr~sfehv~ 101 (213)
T KOG0091|consen 52 LRPG-----------------YRIKLQLWDTAGQERF-------------RSITKSYYRNSVGVLLVYDITNRESFEHVE 101 (213)
T ss_pred cCCC-----------------cEEEEEEeeccchHHH-------------HHHHHHHhhcccceEEEEeccchhhHHHHH
Confidence 1112 1236899999997654 899999999999888887655542 1 223
Q ss_pred HHHHhhh------cc--eeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKISR------ER--TFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~~------~r--~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+++..|. .+ ..+|.+|+|+.....-..+-.+......+.-|+..+++++.++++-..++..
T Consensus 102 ~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 102 NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence 4444444 33 3458899999865432111112223355667999999999998887777654
No 239
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.73 E-value=3.9e-08 Score=105.94 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhhHHHHhhh----cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISR----ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~~~l~l~~----~r~i~VltK~D~ 209 (604)
..++|+||||..+. +. .+...+..+|+++++++..... ..+.+.+..+. .++++|+||+|+
T Consensus 85 ~~i~liDtPG~~~f------------~~-~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETL------------MA-TMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHH------------HH-HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 36899999995321 12 2233445679998887655321 22223333332 468999999999
Q ss_pred CCCCCCH--HHHHhCC---ccccCCCEEEEEeCChhhhhccccHHH
Q 007422 210 MDKGTDA--ADILEGK---SYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 210 ~~~~~~~--~~~l~~~---~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.+..... .+.+... .......++.+++.++.+++.++..+.
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 197 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIE 197 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 8643211 1111110 011134577788887777765554443
No 240
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.72 E-value=3.9e-08 Score=110.09 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||..++ ...+..+++.+|+++|+|++.... ..+..++..+. .|.|+|+||+|+.+
T Consensus 64 ~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 64 TKINIVDTPGHADF-------------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS 130 (594)
T ss_pred EEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC
Confidence 47999999998654 345678899999999988664422 22334444443 78999999999864
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 131 a 131 (594)
T TIGR01394 131 A 131 (594)
T ss_pred c
Confidence 3
No 241
>PRK12739 elongation factor G; Reviewed
Probab=98.70 E-value=4.9e-08 Score=112.07 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+|||..++|||||+|+|+... +...+.. ... .+..+.|+.....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~~~~~------~v~------------~~~~~~D~~~~E~------- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKSHKIG------EVH------------DGAATMDWMEQEQ------- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCccccc------ccc------------CCccccCCChhHh-------
Confidence 46689999999999999999997531 1000000 000 0111222221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~ 190 (604)
..| ..+....+.+++ +...++||||||+.+. ...+..+++.+|++|+++++.. .... .
T Consensus 56 -~rg--iti~~~~~~~~~---~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~~ilVvDa~~-g~~~qt~ 115 (691)
T PRK12739 56 -ERG--ITITSAATTCFW---KGHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVS-GVEPQSE 115 (691)
T ss_pred -hcC--CCccceeEEEEE---CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCeEEEEEeCCC-CCCHHHH
Confidence 111 122222333333 2347999999998542 2247788899999988876543 3322 2
Q ss_pred HHHHhhh---cceeEEEecccCCCC
Q 007422 191 DAIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~~~ 212 (604)
..+..+. .|.|+++||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3344333 789999999999854
No 242
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.70 E-value=9.8e-08 Score=105.53 Aligned_cols=134 Identities=16% Similarity=0.285 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..-.|+|+|..+||||||+++|+... +..++...+-. . ........|+.....+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~v~~-~-------------~~~~~~~~D~~~~E~~------ 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGTVKG-R-------------KSGRHATSDWMEMEKQ------ 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccceeec-c-------------ccCccccCCCcHHHHh------
Confidence 45689999999999999999997321 11111110000 0 0000111233322211
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
++..++.....+.+ +...+.+|||||..+. ...+..+++.+|++|+|+++.+. ...+..
T Consensus 63 ----rgiSi~~~~~~~~~---~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~ 122 (526)
T PRK00741 63 ----RGISVTSSVMQFPY---RDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDAAKGVEPQTRK 122 (526)
T ss_pred ----hCCceeeeeEEEEE---CCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEecCCCCCHHHHH
Confidence 12223333333332 2246999999998653 33456788899999998866543 222234
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.+..++ .|+++++||+|+...
T Consensus 123 l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 123 LMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHhcCCCEEEEEECCccccc
Confidence 444443 899999999998653
No 243
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=5.2e-08 Score=89.78 Aligned_cols=144 Identities=17% Similarity=0.273 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.+..++++|+.++|||.||-..++..|-|.-.. ++-+ +|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-------TiGv--------ef-------------------------- 43 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-------TIGV--------EF-------------------------- 43 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc-------eeee--------ee--------------------------
Confidence 567899999999999999999999998555431 1110 00
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~ 190 (604)
| .-.+.|.... ..|.+|||.|...+ ++++.+|.+.+-..|||.+-.+.+ -...
T Consensus 44 ---g--------~r~~~id~k~-IKlqiwDtaGqe~f-------------rsv~~syYr~a~GalLVydit~r~sF~hL~ 98 (216)
T KOG0098|consen 44 ---G--------ARMVTIDGKQ-IKLQIWDTAGQESF-------------RSVTRSYYRGAAGALLVYDITRRESFNHLT 98 (216)
T ss_pred ---c--------eeEEEEcCce-EEEEEEecCCcHHH-------------HHHHHHHhccCcceEEEEEccchhhHHHHH
Confidence 0 0011122211 25789999998665 889999999999998887554433 2223
Q ss_pred HHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCcc--ccCCCEEEEEeCChhhhhc
Q 007422 191 DAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSY--RLKFPWIGVVNRSQADINK 244 (604)
Q Consensus 191 ~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~--~l~~g~~~v~~~s~~~i~~ 244 (604)
.+|..++ .-++++.||+|+....+- +--+|+.. ..++-|+..++++++++++
T Consensus 99 ~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 99 SWLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGLIFMETSAKTAENVEE 158 (216)
T ss_pred HHHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence 4444444 456778899999765431 11122222 2334466667776666554
No 244
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.69 E-value=2e-07 Score=84.17 Aligned_cols=151 Identities=15% Similarity=0.236 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
--||.++|--||||||+++.|.|.+. +..-+|.+-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf------------------------------------------ 50 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF------------------------------------------ 50 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccce------------------------------------------
Confidence 46899999999999999999999762 211122111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l 193 (604)
.-. .++. ....++++|..|--. +++.+++|...+|++|+||+.++ ....++..
T Consensus 51 --------~Ik--tl~~---~~~~L~iwDvGGq~~-------------lr~~W~nYfestdglIwvvDssD-~~r~~e~~ 103 (185)
T KOG0073|consen 51 --------QIK--TLEY---KGYTLNIWDVGGQKT-------------LRSYWKNYFESTDGLIWVVDSSD-RMRMQECK 103 (185)
T ss_pred --------eeE--EEEe---cceEEEEEEcCCcch-------------hHHHHHHhhhccCeEEEEEECch-HHHHHHHH
Confidence 000 1111 123789999998654 38899999999999999997744 22222222
Q ss_pred ----------HhhhcceeEEEecccCCCCCC--CHHHHHhCCc--cccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 194 ----------KISRERTFGVLTKIDLMDKGT--DAADILEGKS--YRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 194 ----------~l~~~r~i~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
++|..+.+++.||.|+...-. ....++.-.. .......+..+..+++++.+.++++.....++
T Consensus 104 ~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 104 QELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 222379999999999863221 1111111111 22334567777888888888888777666553
No 245
>PRK00007 elongation factor G; Reviewed
Probab=98.69 E-value=5.5e-08 Score=111.64 Aligned_cols=130 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+|+|..++|||||+|+|+... +...+ . .... .+..+.|+.....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~-----g~v~------------~~~~~~D~~~~E~------- 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHK-I-----GEVH------------DGAATMDWMEQEQ------- 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccc-c-----cccc------------CCcccCCCCHHHH-------
Confidence 46799999999999999999997421 00000 0 0000 0111222221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~-- 190 (604)
..| ..+......+.+ . ...++||||||+.+. ..-+...+..+|++++|+++ ..+...+
T Consensus 58 -~rg--~ti~~~~~~~~~--~-~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlVvda-~~g~~~qt~ 117 (693)
T PRK00007 58 -ERG--ITITSAATTCFW--K-DHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDA-VGGVEPQSE 117 (693)
T ss_pred -hCC--CCEeccEEEEEE--C-CeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEEEEC-CCCcchhhH
Confidence 112 122222233333 2 347999999997553 11256778889999888764 3333322
Q ss_pred HHHHhhh---cceeEEEecccCCCCC
Q 007422 191 DAIKISR---ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~~~~ 213 (604)
..+..+. .+.|+++||+|+.+..
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 3334433 7899999999988643
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.4e-07 Score=100.79 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|-|+|+|.---||||||-+|-+..+-+...|--|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGIT-------------------------------------------- 39 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGIT-------------------------------------------- 39 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCcee--------------------------------------------
Confidence 679999999999999999999988876444443222
Q ss_pred hhcCCCCcccCccEEEEEecC--CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--h
Q 007422 113 RETGRTKQISSVPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--A 188 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~--~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~ 188 (604)
.+.=-..+..+ +.+.++|+||||...+ ..|=.+-.+-+|.+||+| +++... .
T Consensus 40 ----------QhIGA~~v~~~~~~~~~itFiDTPGHeAF-------------t~mRaRGa~vtDIaILVV-a~dDGv~pQ 95 (509)
T COG0532 40 ----------QHIGAYQVPLDVIKIPGITFIDTPGHEAF-------------TAMRARGASVTDIAILVV-AADDGVMPQ 95 (509)
T ss_pred ----------eEeeeEEEEeccCCCceEEEEcCCcHHHH-------------HHHHhcCCccccEEEEEE-EccCCcchh
Confidence 11111112222 4578999999998654 333333345689898876 444443 4
Q ss_pred hhHHHHhhh---cceeEEEecccCCCCCCCH--HHHHhCCc----cccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 189 TSDAIKISR---ERTFGVLTKIDLMDKGTDA--ADILEGKS----YRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 189 ~~~~l~l~~---~r~i~VltK~D~~~~~~~~--~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
+.+++..++ .|+++.+||+|+.+..-+. .+..+... +.-...++++++.++.++++++..+...
T Consensus 96 TiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 96 TIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 456666666 9999999999998543221 11111111 1111348899999999999988876543
No 247
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.68 E-value=6.6e-07 Score=92.53 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhhcceeEEEecccCCCCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~~r~i~VltK~D~~~~~ 213 (604)
..++.||||||+.... ...+..+|.++++..+... ++.... -.+...+.++|+||+|+.+..
T Consensus 126 g~D~viidT~G~~~~e----------------~~i~~~aD~i~vv~~~~~~~el~~~~-~~l~~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----------------VDIANMADTFVVVTIPGTGDDLQGIK-AGLMEIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCEEEEeCCCCchhh----------------hHHHHhhceEEEEecCCccHHHHHHH-HHHhhhccEEEEEcccccchh
Confidence 3489999999975321 1235568888776544322 221111 123457789999999988653
Q ss_pred CCH--HHH----Hh---CCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 214 TDA--ADI----LE---GKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 214 ~~~--~~~----l~---~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
... ... +. .........++.+++.++.+++++...+...
T Consensus 189 ~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 189 NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 211 000 01 0001112247899999999998887766543
No 248
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.68 E-value=1.5e-07 Score=97.85 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=78.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-.|+|||+.++|||||+|++.|.-++|.-+..--| .+...+.....
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k----------------------------------~Ra~DELpqs~ 63 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK----------------------------------ERAQDELPQSA 63 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHH----------------------------------hHHHhccCcCC
Confidence 46899999999999999999999666654421000 00000000011
Q ss_pred cCC------CCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHH----------------HHHHHHHHHhhc-
Q 007422 115 TGR------TKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV----------------QDIENMVRSYIE- 171 (604)
Q Consensus 115 ~g~------~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~----------------~~i~~~~~~~i~- 171 (604)
+|+ .+-+....+.+.....-...+.||||+|+......|.-+... +.-+-=++..+.
T Consensus 64 ~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d 143 (492)
T TIGR02836 64 AGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE 143 (492)
T ss_pred CCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh
Confidence 120 011222334444333333478999999997654443321111 111112567777
Q ss_pred CCCeEEEEEecCC------Ccc--hhhHHHHh---hhcceeEEEecccCCCC
Q 007422 172 KPNCIILAISPAN------QDL--ATSDAIKI---SRERTFGVLTKIDLMDK 212 (604)
Q Consensus 172 ~~d~iIl~v~~a~------~d~--~~~~~l~l---~~~r~i~VltK~D~~~~ 212 (604)
+++..|++++++. .++ +....+.. .++|.++|+||.|-..+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 7887777765553 111 12223333 33999999999995433
No 249
>PRK10218 GTP-binding protein; Provisional
Probab=98.68 E-value=9.3e-08 Score=107.01 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||..+. ...+..+++.+|++|+|+++.... ..+...+..+. .|.++|+||+|+..
T Consensus 68 ~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 68 YRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC
Confidence 47999999998664 345678899999999988665431 12223333333 78899999999864
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 135 a 135 (607)
T PRK10218 135 A 135 (607)
T ss_pred C
Confidence 3
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=98.67 E-value=8.1e-08 Score=104.25 Aligned_cols=126 Identities=18% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-..|+++|..++|||||+++|+|.. ...+.. +.. . |. ..|.. .. ++
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---~~~---~----------~~---------~~D~~--~~------E~ 106 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVL-AEEGKA---KAV---A----------FD---------EIDKA--PE------EK 106 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHH-HHhhcc---cce---e----------ec---------cccCC--hh------Hh
Confidence 3469999999999999999998642 011110 000 0 00 00000 00 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~ 191 (604)
..+++-+.....+... ..+++|+||||+.+ .+.+++. -+..+|+++|++++ +..... .+
T Consensus 107 ----~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~------------f~~~~~~-g~~~aD~allVVda-~~g~~~qt~e 167 (447)
T PLN03127 107 ----ARGITIATAHVEYETA-KRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGGILVVSA-PDGPMPQTKE 167 (447)
T ss_pred ----hcCceeeeeEEEEcCC-CeEEEEEECCCccc------------hHHHHHH-HHhhCCEEEEEEEC-CCCCchhHHH
Confidence 1223333334444333 34799999999853 2344443 34569999887764 433322 23
Q ss_pred HHHhhh---cc-eeEEEecccCCCC
Q 007422 192 AIKISR---ER-TFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r-~i~VltK~D~~~~ 212 (604)
.+.++. .+ .|+|+||+|+++.
T Consensus 168 ~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 168 HILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHcCCCeEEEEEEeeccCCH
Confidence 334433 56 5789999999863
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=98.66 E-value=8.9e-08 Score=104.53 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh---cc-eeEEEeccc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR---ER-TFGVLTKID 208 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r-~i~VltK~D 208 (604)
...++||||||..+. +.++ ...+..+|++++||++. .... +.+.+.++. .+ .|+|+||+|
T Consensus 143 ~~~i~liDtPGh~~f------------~~~~-~~g~~~aD~ailVVda~-~G~~~qt~e~~~~~~~~gi~~iIvvvNK~D 208 (478)
T PLN03126 143 NRHYAHVDCPGHADY------------VKNM-ITGAAQMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPNMVVFLNKQD 208 (478)
T ss_pred CcEEEEEECCCHHHH------------HHHH-HHHHhhCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 347899999997542 2344 44557899998877543 3322 234444444 44 788999999
Q ss_pred CCCC
Q 007422 209 LMDK 212 (604)
Q Consensus 209 ~~~~ 212 (604)
+.+.
T Consensus 209 l~~~ 212 (478)
T PLN03126 209 QVDD 212 (478)
T ss_pred ccCH
Confidence 9863
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.65 E-value=1.1e-07 Score=105.15 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEecccCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
...+.||||||..+. ...+..+++.+|++|+|+++.+. ...+...++.++ .|+++++||+|+.
T Consensus 79 ~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 347899999998543 33456778999999998876553 222333444443 8999999999986
Q ss_pred C
Q 007422 211 D 211 (604)
Q Consensus 211 ~ 211 (604)
.
T Consensus 146 ~ 146 (527)
T TIGR00503 146 I 146 (527)
T ss_pred C
Confidence 4
No 253
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.65 E-value=5.8e-08 Score=91.64 Aligned_cols=113 Identities=19% Similarity=0.382 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|+++|..+||||+|+..|......+ ++|.......+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceE------------------------------------
Confidence 45899999999999999999998764321 12211100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHH--hhcCCCeEEEEEecCCCcchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRS--YIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~--~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
.+..+....+.+||+||..+.. ..+... |+..+.+||+||+++...-...
T Consensus 42 ----------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 42 ----------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ----------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ----------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 0012233478999999997752 223333 6889999999987764211111
Q ss_pred HH-------HHhh-----hcceeEEEecccCCCCC
Q 007422 191 DA-------IKIS-----RERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 ~~-------l~l~-----~~r~i~VltK~D~~~~~ 213 (604)
+. +... +.|+++++||.|+....
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11 1110 18899999999987643
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.64 E-value=1.2e-07 Score=102.94 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=58.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chhhHHHHhhh----cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~~~~l~l~~----~r~i~VltK~D~~ 210 (604)
.++||||||..+ .+++|+ .-+..+|.++|||++.... ..+.+.+..+. .+.|+|+||+|+.
T Consensus 118 ~i~~IDtPGH~~------------fi~~m~-~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGHDI------------LMATML-NGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCHHH------------HHHHHH-HHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence 689999999633 334443 4456899998877655321 22234444433 6789999999998
Q ss_pred CCCC--C----HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 211 DKGT--D----AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 211 ~~~~--~----~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+... + ..+++.+. ......++.+++.++.+++.+.+.+.
T Consensus 185 ~~~~~~~~~~ei~~~l~~~-~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGT-IADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred CHHHHHHHHHHHHHHHHhh-ccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 6321 0 11111110 11234678888877777655554443
No 255
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.64 E-value=8.1e-08 Score=103.19 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
--.|+++|..++|||||+++|++.- ...+.+-.. .+ ...| .... ++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~----------------~~---------~~~d--~~~~------E~ 57 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAAR----------------AY---------DQID--NAPE------EK 57 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhccccc----------------cc---------cccc--CCHH------HH
Confidence 3469999999999999999998752 111110000 00 0000 0001 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDA 192 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~ 192 (604)
..| ++-+...+.+.. +...++||||||..+. +.++ ...+..+|++++++++... ...+.+.
T Consensus 58 ~rG----~Ti~~~~~~~~~-~~~~~~liDtpGh~~f------------~~~~-~~~~~~~D~~ilVvda~~g~~~qt~e~ 119 (394)
T TIGR00485 58 ARG----ITINTAHVEYET-ENRHYAHVDCPGHADY------------VKNM-ITGAAQMDGAILVVSATDGPMPQTREH 119 (394)
T ss_pred hcC----cceeeEEEEEcC-CCEEEEEEECCchHHH------------HHHH-HHHHhhCCEEEEEEECCCCCcHHHHHH
Confidence 122 233333334433 2346899999997542 2333 3345688999887754331 1222233
Q ss_pred HHhhh---cce-eEEEecccCCCC
Q 007422 193 IKISR---ERT-FGVLTKIDLMDK 212 (604)
Q Consensus 193 l~l~~---~r~-i~VltK~D~~~~ 212 (604)
+.++. .+. |+|+||+|+.++
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 44433 454 578999999864
No 256
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.63 E-value=5.6e-08 Score=89.42 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.+-.|++.|+.|+|||||+|.++..+|.- .| .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-----------------------qy-------------------------k 39 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-----------------------QY-------------------------K 39 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-----------------------Hh-------------------------c
Confidence 57789999999999999999999888710 00 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-Ccchhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~-~d~~~~- 190 (604)
... +..|-.. .+.|. .....|.+|||.|-.++ ..+-..+.+.+|+.+|+..-.+ ..+.+.
T Consensus 40 aTI--gadFltK--ev~Vd-~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 40 ATI--GADFLTK--EVQVD-DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENLE 101 (210)
T ss_pred ccc--chhheee--EEEEc-CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccHH
Confidence 000 1111111 22222 22336899999998776 3334578899999988753222 122222
Q ss_pred ----HHHHhhh------cceeEEEecccCCCCCCC---HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 ----DAIKISR------ERTFGVLTKIDLMDKGTD---AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ----~~l~l~~------~r~i~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
+.+..+. =|.|++.||+|.-+.... .......-...-..+||.+++....++++.+..+...
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 3333333 689999999998653211 1122111222335689999998887777666555443
No 257
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=7e-08 Score=89.93 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~ 64 (604)
..|+++|.+|+|||||+|+|.|....+++.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 478899999999999999999987655443
No 258
>PLN00023 GTP-binding protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=96.70 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhhh-----------------
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISR----------------- 197 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~~----------------- 197 (604)
.+.||||+|-... +.+...|++++|++|+|++..+.+. ....++....
T Consensus 84 ~LqIWDTAGqErf-------------rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 84 FVELWDVSGHERY-------------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred EEEEEECCCChhh-------------hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 4789999997553 6678889999999999987655321 1112222211
Q ss_pred -cceeEEEecccCCCC
Q 007422 198 -ERTFGVLTKIDLMDK 212 (604)
Q Consensus 198 -~r~i~VltK~D~~~~ 212 (604)
.++++|.||+|+.++
T Consensus 151 ~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 151 PVPYIVIGNKADIAPK 166 (334)
T ss_pred CCcEEEEEECcccccc
Confidence 468999999998653
No 259
>PRK00049 elongation factor Tu; Reviewed
Probab=98.60 E-value=1.3e-07 Score=101.53 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=41.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---ccee-EEEecccC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTF-GVLTKIDL 209 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i-~VltK~D~ 209 (604)
..+++|+||||+.+ .+.++. ..+..+|++++++++... ...+.+.+.++. .|.+ +|+||+|+
T Consensus 74 ~~~i~~iDtPG~~~------------f~~~~~-~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 KRHYAHVDCPGHAD------------YVKNMI-TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CeEEEEEECCCHHH------------HHHHHH-hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 34789999999743 233333 456889999887765432 122223444443 6765 68999999
Q ss_pred CC
Q 007422 210 MD 211 (604)
Q Consensus 210 ~~ 211 (604)
++
T Consensus 141 ~~ 142 (396)
T PRK00049 141 VD 142 (396)
T ss_pred cc
Confidence 85
No 260
>PRK12736 elongation factor Tu; Reviewed
Probab=98.60 E-value=1.7e-07 Score=100.68 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhhh---cc-eeEEEeccc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISR---ER-TFGVLTKID 208 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~~---~r-~i~VltK~D 208 (604)
..+++||||||..+ .+.++ ..-+..+|++++|+++. ... .+.+.+.++. .+ .|+|+||+|
T Consensus 74 ~~~i~~iDtPGh~~------------f~~~~-~~~~~~~d~~llVvd~~-~g~~~~t~~~~~~~~~~g~~~~IvviNK~D 139 (394)
T PRK12736 74 KRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVAAT-DGPMPQTREHILLARQVGVPYLVVFLNKVD 139 (394)
T ss_pred CcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEEECC-CCCchhHHHHHHHHHHcCCCEEEEEEEecC
Confidence 34789999999643 23344 33457899998877643 332 2233444443 55 678999999
Q ss_pred CCCC
Q 007422 209 LMDK 212 (604)
Q Consensus 209 ~~~~ 212 (604)
+.+.
T Consensus 140 ~~~~ 143 (394)
T PRK12736 140 LVDD 143 (394)
T ss_pred Ccch
Confidence 9753
No 261
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.59 E-value=1.9e-07 Score=107.93 Aligned_cols=129 Identities=14% Similarity=0.245 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+|+|..++|||||+++|+... |..++.- ..+..+.|+..... +
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------------------~g~~~~~D~~~~E~--~---- 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------------------AGEQLALDFDEEEQ--A---- 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------------------cCcceecCccHHHH--H----
Confidence 46689999999999999999998542 2111100 00111222222111 1
Q ss_pred hhcCCCCcccCccEEEEEecC-CCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~ 190 (604)
.| -++....+.+.+... ....++||||||+.+. ...+...++.+|++|+||++... ...+.
T Consensus 67 --rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvda~~g~~~~t~ 129 (731)
T PRK07560 67 --RG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVDAVEGVMPQTE 129 (731)
T ss_pred --hh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEECCCCCCccHH
Confidence 11 122222333333211 2346899999999774 33456778899999888765432 22333
Q ss_pred HHHHhhh---cceeEEEecccCC
Q 007422 191 DAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~ 210 (604)
..+..+. .+.|+++||+|+.
T Consensus 130 ~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 130 TVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHcCCCeEEEEECchhh
Confidence 4444432 6789999999976
No 262
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=8.7e-07 Score=82.09 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccc------cccEEEEEEecCCCCcceeeeccCCCCccCChHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT------RRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRK 105 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~T------r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 105 (604)
..-+.|+|+|.+++||+|++.+++.... +.-....+ .+|+++.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~k~kr~tTva------------------------------ 56 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSGKGKRPTTVA------------------------------ 56 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeeccccccccccccceeEe------------------------------
Confidence 3568999999999999999999998762 22211111 1122222
Q ss_pred HHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC
Q 007422 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (604)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~ 185 (604)
.+.-.+.+ .+...+.|+||||..++ +-|+.-+.+.+..+|++|+++..
T Consensus 57 -----------------~D~g~~~~--~~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss~~ 104 (187)
T COG2229 57 -----------------MDFGSIEL--DEDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSSRP 104 (187)
T ss_pred -----------------ecccceEE--cCcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecCCC
Confidence 11111122 22236899999998775 77888889999999888765443
Q ss_pred -cchhhHHHHhhh----cceeEEEecccCCCCCC--CHHHHHhCCccccCCCEEEEEeCChhhh
Q 007422 186 -DLATSDAIKISR----ERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNRSQADI 242 (604)
Q Consensus 186 -d~~~~~~l~l~~----~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~i 242 (604)
+......+.... .|.++.+||.|+.+.-. +..+++.-.. +..+.++...+..++.
T Consensus 105 ~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~e~~~~ 166 (187)
T COG2229 105 ITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDATEGEGA 166 (187)
T ss_pred cchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecccchhH
Confidence 332222222222 78999999999987543 2344443211 3566777766655443
No 263
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.58 E-value=6.8e-08 Score=86.65 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-...|.+||+.|+|||||+-.++.-.|-|-.. ++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~-------~t--------------------------------------- 43 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP-------TT--------------------------------------- 43 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCC-------ce---------------------------------------
Confidence 45789999999999999999998876622211 11
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
-++....-.+.+.+.. ..|.||||.|..++ +.++-+|.+.+..||+|.+-...| +...+
T Consensus 44 ------IGvDFkvk~m~vdg~~-~KlaiWDTAGqErF-------------RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd 103 (209)
T KOG0080|consen 44 ------IGVDFKVKVMQVDGKR-LKLAIWDTAGQERF-------------RTLTPSYYRGAQGIILVYDVTSRDTFVKLD 103 (209)
T ss_pred ------eeeeEEEEEEEEcCce-EEEEEEeccchHhh-------------hccCHhHhccCceeEEEEEccchhhHHhHH
Confidence 1111111222233332 36899999997665 788899999999999987554433 22222
Q ss_pred -HHHhhh-------cceeEEEecccCCCCCCCHHHHHhCCcc--ccCCCEEEEEeCChhhhhccccHHHHHHHHHHHh
Q 007422 192 -AIKISR-------ERTFGVLTKIDLMDKGTDAADILEGKSY--RLKFPWIGVVNRSQADINKNVDMIAARRREREYF 259 (604)
Q Consensus 192 -~l~l~~-------~r~i~VltK~D~~~~~~~~~~~l~~~~~--~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff 259 (604)
|++... .-.++|.||+|.-.+. ..+--+|... ..+.=|+..++++.+++..-+.-+.....|.+.|
T Consensus 104 ~W~~Eld~Ystn~diikmlVgNKiDkes~R--~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 104 IWLKELDLYSTNPDIIKMLVGNKIDKESER--VVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSL 179 (209)
T ss_pred HHHHHHHhhcCCccHhHhhhcccccchhcc--cccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcch
Confidence 222222 3456799999964322 1122223222 2233477788887777665554444444444333
No 264
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.58 E-value=1.9e-07 Score=107.56 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEecccCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
...+.||||||+.+. ...+..+++.+|++|+|++.... ...+...++.+. .+.++|+||+|..
T Consensus 85 ~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 347999999999764 23457888999999998765332 122233343332 6788999999986
Q ss_pred C
Q 007422 211 D 211 (604)
Q Consensus 211 ~ 211 (604)
.
T Consensus 152 ~ 152 (720)
T TIGR00490 152 I 152 (720)
T ss_pred c
Confidence 4
No 265
>PRK13351 elongation factor G; Reviewed
Probab=98.55 E-value=4e-07 Score=104.84 Aligned_cols=130 Identities=16% Similarity=0.220 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|+|+|..++|||||+++|+... +...+.- .+. .+....|+.....
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~------g~~~~~~-~v~-----------------~~~~~~d~~~~e~------- 55 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYT------GKIHKMG-EVE-----------------DGTTVTDWMPQEQ------- 55 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhc------CCccccc-ccc-----------------CCcccCCCCHHHH-------
Confidence 45789999999999999999998532 1000000 000 0011122221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
. .+..+......+.+ ....+.||||||..+. ...+..+++.+|++|++++..... ..+..
T Consensus 56 -~--r~~ti~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~ 116 (687)
T PRK13351 56 -E--RGITIESAATSCDW---DNHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVVVFDAVTGVQPQTET 116 (687)
T ss_pred -h--cCCCcccceEEEEE---CCEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 1 11223333333333 2347999999998653 445678899999999987654432 22233
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.+..+. .|.++|+||+|+...
T Consensus 117 ~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 117 VWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHhcCCCEEEEEECCCCCCC
Confidence 333333 889999999998753
No 266
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.55 E-value=3.4e-08 Score=87.24 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..|...+++|++++|||||+-.+..-.| -.+...++..-..++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir------------------------------------ 48 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR------------------------------------ 48 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE------------------------------------
Confidence 4677789999999999999998876654 222222222222222
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~ 189 (604)
.+.|.+. ...|.||||.|-..+ +.++..|.+.++.+|+|.+-.|.. ...
T Consensus 49 ---------------Tv~i~G~-~VkLqIwDtAGqErF-------------rtitstyyrgthgv~vVYDVTn~ESF~Nv 99 (198)
T KOG0079|consen 49 ---------------TVDINGD-RVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGESFNNV 99 (198)
T ss_pred ---------------EeecCCc-EEEEEEeecccHHHH-------------HHHHHHHccCCceEEEEEECcchhhhHhH
Confidence 1112221 126889999996543 889999999999999887655532 233
Q ss_pred hHHHHhhh-----cceeEEEecccCCCCC
Q 007422 190 SDAIKISR-----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 190 ~~~l~l~~-----~r~i~VltK~D~~~~~ 213 (604)
..||..++ .+-++|.||.|..+..
T Consensus 100 ~rWLeei~~ncdsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 100 KRWLEEIRNNCDSVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHHhcCccccceecccCCCCccce
Confidence 46677666 7789999999976653
No 267
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=94.50 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
....|.|+|||=+||||||||++|++..++|.+.-..|--||.-.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~----------------------------------- 219 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS----------------------------------- 219 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh-----------------------------------
Confidence 357899999999999999999999999999999877776663322
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
..-|....+.+.||=|+.+.- |..+....+ .+..-+..+|.|+.+++.++.++..+
T Consensus 220 -------------------a~Lpsg~~vlltDTvGFisdL----P~~LvaAF~-ATLeeVaeadlllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 220 -------------------AHLPSGNFVLLTDTVGFISDL----PIQLVAAFQ-ATLEEVAEADLLLHVVDISHPNAEEQ 275 (410)
T ss_pred -------------------ccCCCCcEEEEeechhhhhhC----cHHHHHHHH-HHHHHHhhcceEEEEeecCCccHHHH
Confidence 112223357899999997632 222443333 34566788999999987777666554
Q ss_pred HH--HHhhh----------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DA--IKISR----------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~--l~l~~----------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.. +...+ .++|=|=||+|..+.... .-+.+-+++++.++++.+++...+.
T Consensus 276 ~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e----------~E~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 276 RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE----------EEKNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc----------cccCCccccccccCccHHHHHHHHH
Confidence 32 22222 556667778776543211 1123467788888887776655443
No 268
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.54 E-value=2.7e-07 Score=90.56 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=91.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
..+.|++++.|..|+|||||||.++..+. -..++ .
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~----k---------------------------------------- 167 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTS----K---------------------------------------- 167 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhc----C----------------------------------------
Confidence 35779999999999999999999998764 11110 0
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEE--EEEecCCC---
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCII--LAISPANQ--- 185 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iI--l~v~~a~~--- 185 (604)
-..|.++.+.. +.. ...+.+||+||+.....+. ...+...++++.|+.+-+..+ ++.+++..
T Consensus 168 --~K~g~Tq~in~-------f~v-~~~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~ 234 (320)
T KOG2486|consen 168 --SKNGKTQAINH-------FHV-GKSWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQ 234 (320)
T ss_pred --CCCccceeeee-------eec-cceEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCC
Confidence 01122222111 111 1268999999965543332 234456788888887644221 22234433
Q ss_pred --cchhhHHHHhhhcceeEEEecccCCCCCCC--H---HHH---HhC---CccccCCCEEEEEeCChhhhhccccH
Q 007422 186 --DLATSDAIKISRERTFGVLTKIDLMDKGTD--A---ADI---LEG---KSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 186 --d~~~~~~l~l~~~r~i~VltK~D~~~~~~~--~---~~~---l~~---~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
|.....++.....|..+|+||||....... . ..+ +.+ .......+|+.++.++..+++.+.-.
T Consensus 235 ~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~ 310 (320)
T KOG2486|consen 235 PTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLH 310 (320)
T ss_pred CCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeee
Confidence 333333444444999999999998754321 0 111 111 12333457888888887777665543
No 269
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.53 E-value=1e-07 Score=90.13 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~ 64 (604)
..+++|+|.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 4689999999999999999999987655544
No 270
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.52 E-value=3.1e-07 Score=99.91 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=56.5
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--------chhhHHHHhhh----cceeE
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISR----ERTFG 202 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--------~~~~~~l~l~~----~r~i~ 202 (604)
...++||||||..++ +.++ ...+..+|++||+|++.... ..+.+.+.++. .+.|+
T Consensus 84 ~~~i~lIDtPGh~~f------------~~~~-~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 84 KYYFTIIDAPGHRDF------------IKNM-ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred CeEEEEEECCChHHH------------HHHH-HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 347899999996542 2333 34467999999987654421 23445555554 45789
Q ss_pred EEecccCC--CCC-CCH-------HHHHhCCccc-cCCCEEEEEeCChhhhhc
Q 007422 203 VLTKIDLM--DKG-TDA-------ADILEGKSYR-LKFPWIGVVNRSQADINK 244 (604)
Q Consensus 203 VltK~D~~--~~~-~~~-------~~~l~~~~~~-l~~g~~~v~~~s~~~i~~ 244 (604)
++||+|.. +-. ... ...+...... ....++.+++.++.++.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99999943 211 111 1111111111 135678888888877653
No 271
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.51 E-value=4.6e-07 Score=98.49 Aligned_cols=97 Identities=18% Similarity=0.302 Sum_probs=57.9
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--------hhhHHHHhhh----cceeE
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISR----ERTFG 202 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--------~~~~~l~l~~----~r~i~ 202 (604)
...++|+||||..++ +.+ +..++..+|+.|+||++....+ .+.+.+.++. .+.|+
T Consensus 84 ~~~i~liDtPGh~df------------~~~-~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV 150 (447)
T PLN00043 84 KYYCTVIDAPGHRDF------------IKN-MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMIC 150 (447)
T ss_pred CEEEEEEECCCHHHH------------HHH-HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEE
Confidence 347899999997553 233 4566789999999876654212 2334444443 46788
Q ss_pred EEecccCCCCC---CC-------HHHHHhCCccc-cCCCEEEEEeCChhhhhc
Q 007422 203 VLTKIDLMDKG---TD-------AADILEGKSYR-LKFPWIGVVNRSQADINK 244 (604)
Q Consensus 203 VltK~D~~~~~---~~-------~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~ 244 (604)
++||+|+.+.. .. ..+++...... ....|+.+++..+.++.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 151 CCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99999986321 11 11222211111 124688999888777643
No 272
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=1.6e-07 Score=87.37 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccE
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPL 72 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~ 72 (604)
..++++++|.+|+|||||+|+|+|....+.+.+ .+|+.+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 568999999999999999999999875565544 4555553
No 273
>PTZ00416 elongation factor 2; Provisional
Probab=98.49 E-value=5.1e-07 Score=105.49 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=42.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
.++|+||||+.+. ..-+...++.+|++|+||++... ...+...++.+. .|.|+++||+|+.
T Consensus 93 ~i~liDtPG~~~f-------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhH-------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 4899999998663 22246678899999887764432 223334444443 6899999999986
No 274
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1e-06 Score=93.59 Aligned_cols=149 Identities=19% Similarity=0.317 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
....|-|-|+|..--||||||.+|-+..+-....|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~G--------------------------------------------- 184 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAG--------------------------------------------- 184 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcC---------------------------------------------
Confidence 34788999999999999999999988776332222
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--h
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--A 188 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~ 188 (604)
|-+..+... .+.-|+...+||.||||...+ ..|-.+-..-+|.++||| +++... .
T Consensus 185 -----GITQhIGAF----~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtDIvVLVV-AadDGVmpQ 241 (683)
T KOG1145|consen 185 -----GITQHIGAF----TVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTDIVVLVV-AADDGVMPQ 241 (683)
T ss_pred -----CccceeceE----EEecCCCCEEEEecCCcHHHH-------------HHHHhccCccccEEEEEE-EccCCccHh
Confidence 112222221 133344568999999998654 445444555678777765 555443 4
Q ss_pred hhHHHHhhh---cceeEEEecccCCCCCCCHH----HHHhCCccccCC----CEEEEEeCChhhhhccccHH
Q 007422 189 TSDAIKISR---ERTFGVLTKIDLMDKGTDAA----DILEGKSYRLKF----PWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 189 ~~~~l~l~~---~r~i~VltK~D~~~~~~~~~----~~l~~~~~~l~~----g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.++++.++ .|+|+.+||+|.- +.+.. +++......-.+ ..+.+++..+.+++.+...+
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHH
Confidence 557777777 9999999999954 44432 333222211122 25777777778777655543
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.49 E-value=7.9e-07 Score=88.01 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=39.5
Q ss_pred CCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh---cc-eeEEEec
Q 007422 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR---ER-TFGVLTK 206 (604)
Q Consensus 133 ~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r-~i~VltK 206 (604)
+....++++||||.. .. +...++.+|++++++++. .+.. ....+.... .+ +++|+||
T Consensus 80 ~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllviDa~-~~~~~~~~~i~~~l~~~g~p~vi~VvnK 142 (225)
T cd01882 80 GKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLIDAS-FGFEMETFEFLNILQVHGFPRVMGVLTH 142 (225)
T ss_pred cCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEEecC-cCCCHHHHHHHHHHHHcCCCeEEEEEec
Confidence 345578999999842 11 224467899998877643 3332 223333333 45 5669999
Q ss_pred ccCCCCC
Q 007422 207 IDLMDKG 213 (604)
Q Consensus 207 ~D~~~~~ 213 (604)
+|++++.
T Consensus 143 ~D~~~~~ 149 (225)
T cd01882 143 LDLFKKN 149 (225)
T ss_pred cccCCcH
Confidence 9998543
No 276
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.49 E-value=6e-07 Score=105.07 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=42.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
.++||||||..++ -.-+...++.+|+.|+||++... ...+...++.+. .+.|+++||+|+.
T Consensus 99 ~inliDtPGh~dF-------------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHHHH-------------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 4789999998664 22235667889999888765432 223334444443 7899999999987
No 277
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.2e-07 Score=93.04 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=55.2
Q ss_pred CceEeeCCCCccccCCC-CCccHHHHHHHHHHHhhc-------------CCCeEEEEEecCCCcchhhHHHHhhh----c
Q 007422 137 NLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSYIE-------------KPNCIILAISPANQDLATSDAIKISR----E 198 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~-q~~~~~~~i~~~~~~~i~-------------~~d~iIl~v~~a~~d~~~~~~l~l~~----~ 198 (604)
+|++|||||+.+.-... --.-+...+.+...+|+. +.||.++++.|....+...|...+-+ .
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v 159 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV 159 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc
Confidence 68999999997654332 123356667777777774 34788888888777666665543333 8
Q ss_pred ceeEEEecccCCCCCC
Q 007422 199 RTFGVLTKIDLMDKGT 214 (604)
Q Consensus 199 r~i~VltK~D~~~~~~ 214 (604)
++|-|+.|.|.+.+.+
T Consensus 160 NiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 160 NLIPVIAKADTLTKDE 175 (366)
T ss_pred cccceeeccccCCHHH
Confidence 8999999999987654
No 278
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.44 E-value=6.6e-07 Score=91.57 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=56.0
Q ss_pred CceEeeCCCCccccCCCC-CccHHHHHHHHHHHhhc--------------CCCeEEEEEecCCCcchhhHHHHhhh----
Q 007422 137 NLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISR---- 197 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q-~~~~~~~i~~~~~~~i~--------------~~d~iIl~v~~a~~d~~~~~~l~l~~---- 197 (604)
+|+++||||+.+.-.... -+-+...+++...+|+. +.|++++++-|....+...|...+-+
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~ 162 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR 162 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc
Confidence 699999999987644321 23356667777777775 24788888888887777776544433
Q ss_pred cceeEEEecccCCCCCC
Q 007422 198 ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 198 ~r~i~VltK~D~~~~~~ 214 (604)
.++|-|+.|.|.+...+
T Consensus 163 vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 163 VNLIPVIAKADTLTDDE 179 (373)
T ss_pred cCeeeeeeccccCCHHH
Confidence 88999999999987543
No 279
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=7.6e-07 Score=85.33 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=48.2
Q ss_pred CceEeeCCCCccccCCCCC-ccHHHHHHHHHHHhhc--------------CCCeEEEEEecCCCcchhhHH--HH-hhh-
Q 007422 137 NLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDA--IK-ISR- 197 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~-~~~~~~i~~~~~~~i~--------------~~d~iIl~v~~a~~d~~~~~~--l~-l~~- 197 (604)
+|+++||||+.+.-..+.- +-+...+++.-.+|++ ..+|+++++-|....+...|. ++ +.+
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v 184 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV 184 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh
Confidence 6899999999765433211 2255556666666664 246887877776655554443 22 222
Q ss_pred cceeEEEecccCCC
Q 007422 198 ERTFGVLTKIDLMD 211 (604)
Q Consensus 198 ~r~i~VltK~D~~~ 211 (604)
.+++-|+-|.|.+.
T Consensus 185 vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 185 VNVVPVIAKADTLT 198 (336)
T ss_pred heeeeeEeeccccc
Confidence 78899999999875
No 280
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.8e-06 Score=89.65 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=59.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc------c--hhhHHHHhhh----cceeEE
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD------L--ATSDAIKISR----ERTFGV 203 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d------~--~~~~~l~l~~----~r~i~V 203 (604)
..++|+|+||..+ .+.+|+. -..++|+.||||++.+.. . .+.+-+-+++ ...|++
T Consensus 85 ~~~tIiDaPGHrd------------FvknmIt-GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRD------------FVKNMIT-GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred ceEEEeeCCchHH------------HHHHhhc-chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 4799999999543 3355543 356899999987654432 2 2233444555 899999
Q ss_pred EecccCCCCCCCH----H----HHHhCCcccc-CCCEEEEEeCChhhhhcc
Q 007422 204 LTKIDLMDKGTDA----A----DILEGKSYRL-KFPWIGVVNRSQADINKN 245 (604)
Q Consensus 204 ltK~D~~~~~~~~----~----~~l~~~~~~l-~~g~~~v~~~s~~~i~~~ 245 (604)
+||+|.++-..+. . .++..-.+.- ...|++++.-++.++.+.
T Consensus 152 vNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9999999743321 1 1111111111 245888888888776543
No 281
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=4.8e-07 Score=82.73 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.+++++|.+|+|||||+|+|+|...
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999999875
No 282
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.37 E-value=2e-06 Score=82.96 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=89.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|..|+|||+|.-.+++..|.+.-.. +.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~p-ti--------------------------------------------- 36 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDP-TI--------------------------------------------- 36 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCC-Cc---------------------------------------------
Confidence 46899999999999999999998876222110 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~ 191 (604)
. ......+.+. .....|.|+||+|.... ..|-..|+...|..++|.+-.+.. +. ...
T Consensus 37 -----e--d~y~k~~~v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVysitd~~SF~~~~~ 95 (196)
T KOG0395|consen 37 -----E--DSYRKELTVD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVYSITDRSSFEEAKQ 95 (196)
T ss_pred -----c--ccceEEEEEC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEEECCCHHHHHHHHH
Confidence 0 0000111122 22336789999994332 556678999999998876543321 11 111
Q ss_pred HHHhh-h------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKIS-R------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~-~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
..... + .|+++|.||+|+........+--.......+.+|+.+++....++++.+..+.
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 11111 1 69999999999976432211111111334567799999988777776555433
No 283
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.36 E-value=4.2e-07 Score=87.46 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999998764
No 284
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=8.5e-07 Score=83.70 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
+.-+..|+++|++++|||-|+...+.-.|-+-+ +.++-+.+
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~S-----ksTIGvef---------------------------------- 51 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLES-----KSTIGVEF---------------------------------- 51 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccc-----ccceeEEE----------------------------------
Confidence 347889999999999999999999988872222 22211110
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cc-h
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DL-A 188 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~-~ 188 (604)
....+.+.+. .....||||.|.-+. +.++..|.+.+...+||.+-.+. .+ .
T Consensus 52 -------------~t~t~~vd~k-~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAllVYDITr~~Tfen 104 (222)
T KOG0087|consen 52 -------------ATRTVNVDGK-TVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITRRQTFEN 104 (222)
T ss_pred -------------EeeceeecCc-EEEEeeecccchhhh-------------ccccchhhcccceeEEEEechhHHHHHH
Confidence 0000111111 125789999998664 66788999999999888754332 11 3
Q ss_pred hhHHHHhhh------cceeEEEecccCCC
Q 007422 189 TSDAIKISR------ERTFGVLTKIDLMD 211 (604)
Q Consensus 189 ~~~~l~l~~------~r~i~VltK~D~~~ 211 (604)
...||+.++ .++++|.||+|+..
T Consensus 105 v~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 105 VERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 345565555 77889999999876
No 285
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=1.9e-06 Score=76.70 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
|.-|..++|+|+.|+|||-||..++..+| --++.. |
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssH-T------------------------------------------ 41 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSH-T------------------------------------------ 41 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhh-cccccc-e------------------------------------------
Confidence 45688999999999999999999988775 111100 0
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--h
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--A 188 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~ 188 (604)
-+..|....|.+ +.....|.+|||.|..++ +..+++|.+.+-..+||.+..+.|. +
T Consensus 42 ------iGveFgSrIinV---GgK~vKLQIWDTAGQErF-------------RSVtRsYYRGAAGAlLVYD~Tsrdsfna 99 (214)
T KOG0086|consen 42 ------IGVEFGSRIVNV---GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRDSFNA 99 (214)
T ss_pred ------eeeeecceeeee---cCcEEEEEEeecccHHHH-------------HHHHHHHhccccceEEEEeccchhhHHH
Confidence 001111111111 112236899999997654 8899999999988888876666553 3
Q ss_pred hhHHHHhhh---cc---eeEEEecccCCCCC
Q 007422 189 TSDAIKISR---ER---TFGVLTKIDLMDKG 213 (604)
Q Consensus 189 ~~~~l~l~~---~r---~i~VltK~D~~~~~ 213 (604)
...||..++ .+ ++++.||-|+-...
T Consensus 100 LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 100 LTNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 345665555 33 34456999986543
No 286
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.29 E-value=1.8e-06 Score=88.26 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~ 64 (604)
...+++|||.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 34689999999999999999999987644443
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.25 E-value=2.1e-06 Score=85.43 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=16.2
Q ss_pred EEcCCCCCHHHHHhhhhC
Q 007422 39 VVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 39 VvG~~saGKSSLlnaL~G 56 (604)
|+|++||||||+..++..
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 799999999999999976
No 288
>PRK13768 GTPase; Provisional
Probab=98.23 E-value=5.3e-06 Score=83.56 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=40.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC--CCeEEEEEecCCC----cchhhHHHH-----hhhcceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK--PNCIILAISPANQ----DLATSDAIK-----ISRERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~--~d~iIl~v~~a~~----d~~~~~~l~-----l~~~r~i~Vlt 205 (604)
++.++||||....... ......+ .+++.. +++++++++.... +......+. ....+.++|+|
T Consensus 98 ~~~~~d~~g~~~~~~~------~~~~~~~-~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 98 DYVLVDTPGQMELFAF------RESGRKL-VERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred CEEEEeCCcHHHHHhh------hHHHHHH-HHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 7899999998664211 1111222 233333 7788777654321 222222222 12389999999
Q ss_pred cccCCCCCC
Q 007422 206 KIDLMDKGT 214 (604)
Q Consensus 206 K~D~~~~~~ 214 (604)
|+|+.+..+
T Consensus 171 K~D~~~~~~ 179 (253)
T PRK13768 171 KADLLSEEE 179 (253)
T ss_pred hHhhcCchh
Confidence 999987643
No 289
>PRK12288 GTPase RsgA; Reviewed
Probab=98.23 E-value=3.2e-06 Score=88.76 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPR 62 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~ 62 (604)
.++++|.+|+|||||||+|+|...+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceee
Confidence 589999999999999999999865433
No 290
>PRK12740 elongation factor G; Reviewed
Probab=98.23 E-value=2.6e-06 Score=97.99 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=44.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..++||||||..+. ...+..++..+|++++++++..... .+...+..+. .|.++|+||+|+..
T Consensus 60 ~~i~liDtPG~~~~-------------~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 60 HKINLIDTPGHVDF-------------TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 47999999998542 3445678889999999887654322 2222333332 78999999999875
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 127 ~ 127 (668)
T PRK12740 127 A 127 (668)
T ss_pred C
Confidence 3
No 291
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.22 E-value=4.2e-06 Score=79.16 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL 60 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~l 60 (604)
..+.++++|.+|+|||||+|+|.+..+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3468999999999999999999998763
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=3.1e-06 Score=84.77 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLP 61 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP 61 (604)
..++++|.+|+|||||||+|+|...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~ 147 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQ 147 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcc
Confidence 478999999999999999999876433
No 293
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4e-06 Score=86.52 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=67.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.++.+||-||+|||||+|||+....-+-....||--|.+=.. . ...- .+ .....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-~---------------------v~d~--rl-~~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-Y---------------------VPDC--RL-DELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-e---------------------cCch--HH-HHHHHh
Confidence 578999999999999999999887655666678877743220 0 0000 00 000111
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a 183 (604)
.+..+. + + ...+.|||.+|+...+..|.. +.+....-|+++|+|+.||...
T Consensus 58 ~~c~~k-----~---~----~~~ve~vDIAGLV~GAs~GeG------LGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VKCPPK-----I---R----PAPVEFVDIAGLVKGASKGEG------LGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCCc-----E---E----eeeeEEEEecccCCCcccCCC------cchHHHHhhhhcCeEEEEEEec
Confidence 110010 1 1 126899999999988776532 3556678899999999988543
No 294
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.1e-06 Score=72.89 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
+.-...-+++|+.++|||.|+..++..+|+ ..||.+|-.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfm-------adcphtigv---------------------------------- 46 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM-------ADCPHTIGV---------------------------------- 46 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHh-------hcCCcccce----------------------------------
Confidence 345667889999999999999999988873 334432220
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cch
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLA 188 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~ 188 (604)
....-.+++.+.. ..|.+|||.|..++ +..+++|.+.+-..++|.+-... --.
T Consensus 47 -----------efgtriievsgqk-iklqiwdtagqerf-------------ravtrsyyrgaagalmvyditrrstynh 101 (215)
T KOG0097|consen 47 -----------EFGTRIIEVSGQK-IKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNH 101 (215)
T ss_pred -----------ecceeEEEecCcE-EEEEEeecccHHHH-------------HHHHHHHhccccceeEEEEehhhhhhhh
Confidence 0011112232322 26889999997554 88899999998877665533222 122
Q ss_pred hhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhc
Q 007422 189 TSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 244 (604)
Q Consensus 189 ~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~ 244 (604)
.+.|+..++ .-++++.||.|+-+......+-...-....++-|...++.+++++++
T Consensus 102 lsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 102 LSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred HHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 345666555 33556789999876543211111111123345567777777766543
No 295
>PRK12289 GTPase RsgA; Reviewed
Probab=98.20 E-value=2.6e-06 Score=89.41 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
.++|+|.+|+|||||||+|+|...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 5899999999999999999987654443
No 296
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=1.7e-06 Score=88.90 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
...+++|||.+|+|||||+|+|+|.....++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~ 150 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTG 150 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccC
Confidence 3468999999999999999999998764444
No 297
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.18 E-value=4e-07 Score=83.15 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=45.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhHHHHhhh-----cceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+.+|||.|-..+ ..+++.|.+.+.+-+||++..+. .-+..++..... .|+++|-||+|+
T Consensus 70 r~mlWdtagqeEf-------------DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl 136 (246)
T KOG4252|consen 70 RSMLWDTAGQEEF-------------DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL 136 (246)
T ss_pred HHHHHHhccchhH-------------HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh
Confidence 4678999996543 67789999999988887754332 123334433332 899999999999
Q ss_pred CCCC
Q 007422 210 MDKG 213 (604)
Q Consensus 210 ~~~~ 213 (604)
++..
T Consensus 137 veds 140 (246)
T KOG4252|consen 137 VEDS 140 (246)
T ss_pred hHhh
Confidence 8754
No 298
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.17 E-value=7.1e-06 Score=81.10 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC--CCCccccc--cccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK--DFLPRGSG--IVTR 69 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~--~~lP~~~~--~~Tr 69 (604)
+.-.|+|+|.+++|||+|+|.|+|. . ++.+.+ .||+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~-f~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCC-eEecCCCCCCcc
Confidence 4567999999999999999999998 5 466554 4554
No 299
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=6.2e-06 Score=76.58 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.--+|+++|=-+|||||++..|--.++ +|..||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~-------vttvPT---------------------------------------- 48 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------VTTVPT---------------------------------------- 48 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc-------ccCCCc----------------------------------------
Confidence 445899999999999999998854443 222441
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~-- 190 (604)
.+|.-..+. .. ...+++||.-|-.+. +.+++.|.++.+.+|+||++++.+--..
T Consensus 49 ------iGfnVE~v~----yk-n~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak 104 (181)
T KOG0070|consen 49 ------IGFNVETVE----YK-NISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAK 104 (181)
T ss_pred ------cccceeEEE----Ec-ceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHH
Confidence 122222221 11 347899999998654 7789999999999999987766432111
Q ss_pred -HHHHhhh------cceeEEEecccCCCCCC--CHHHHHhCCccccCCCEE--EEEeCChhhhhccccHHHH
Q 007422 191 -DAIKISR------ERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWI--GVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 -~~l~l~~------~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~i~~~~~~~~~ 251 (604)
+..++.. .++++..||-|+...-+ +..+.+.-..+.. ..|+ +..+.+++++.+..+.+..
T Consensus 105 ~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 105 EELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 1111111 78899999999865433 1222222122222 3444 3445567777666655443
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=8.1e-06 Score=92.35 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..-.|.|+|.--+|||||.++|+=.. |...+.. ++ ..+..+.|+.....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k~G-~v-----------------~~g~~~~D~~e~Eq------- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISKIG-EV-----------------HDGAATMDWMEQEQ------- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCCCc-cc-----------------cCCCccCCCcHHHH-------
Confidence 56679999999999999999997321 2111100 00 01223444444433
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-CcchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~-~d~~~~~ 191 (604)
.++-++....+.+.+.+ ...+.||||||..++. .-+.+.++-.|..++|+++.. ....+..
T Consensus 58 ---eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavvVvdaveGV~~QTEt 119 (697)
T COG0480 58 ---ERGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVVVVDAVEGVEPQTET 119 (697)
T ss_pred ---hcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEEEEECCCCeeecHHH
Confidence 13455666667776665 3479999999998873 346677888998887765433 2334445
Q ss_pred HHHhhh---cceeEEEecccCCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~~ 213 (604)
.++.+. .|.++++||+|.+...
T Consensus 120 v~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 120 VWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHhhcCCCeEEEEECccccccC
Confidence 566665 8999999999988543
No 301
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=2.3e-06 Score=89.12 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
-+++|||-||+|||||||+|+|...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 4699999999999999999999986
No 302
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.14 E-value=2.1e-06 Score=79.52 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~ 62 (604)
..++++|..|+|||||+|+|++...+.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 6899999999999999999999854333
No 303
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=6.3e-06 Score=78.07 Aligned_cols=65 Identities=26% Similarity=0.402 Sum_probs=44.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCCcchhhHH-------HHhhh-----ccee
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPANQDLATSDA-------IKISR-----ERTF 201 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~---~~d~iIl~v~~a~~d~~~~~~-------l~l~~-----~r~i 201 (604)
.++|||.||..+. +.-...|.+ .+-+|++||+++..+-...+. +...+ .+++
T Consensus 83 ~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4799999998764 444556666 688899998877654332222 22221 7889
Q ss_pred EEEecccCCCCCC
Q 007422 202 GVLTKIDLMDKGT 214 (604)
Q Consensus 202 ~VltK~D~~~~~~ 214 (604)
+.+||-|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999986554
No 304
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.13 E-value=2.9e-05 Score=69.49 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=46.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh-----------cceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR-----------ERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~-----------~r~i~Vlt 205 (604)
.|.|.||.|+...+ .++-+.|++-+|+.+||.++++... -+.+.+.+ .++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~eS--f~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPES--FQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHHH--HHHHHHHHHHHhhccccccccEEEEec
Confidence 68999999997642 5677899999999999887765421 12222221 78888999
Q ss_pred cccCCCCCC
Q 007422 206 KIDLMDKGT 214 (604)
Q Consensus 206 K~D~~~~~~ 214 (604)
|+|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999986654
No 305
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1e-06 Score=78.98 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=66.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhHHHHhhh-------cceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISR-------ERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~~l~l~~-------~r~i~VltK~ 207 (604)
.|.||||.|-.++ ++++..|.+.+=..+|+++-.+. -+....|+...+ .-++++.||+
T Consensus 68 hLQlWDTAGQERF-------------RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~ 134 (219)
T KOG0081|consen 68 HLQLWDTAGQERF-------------RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKA 134 (219)
T ss_pred EEeeeccccHHHH-------------HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCcc
Confidence 5899999997654 88888999998888777654432 234445554433 4567788999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
|+.+...-..+.......+.+++||..++-++.++.+.++.+
T Consensus 135 DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 135 DLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred chhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 998764322222222234677899999998887776554443
No 306
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.10 E-value=1.1e-05 Score=84.59 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=62.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC-CcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-.+.+||-||+|||||+|+|++... -+.....||-.|..=.. ..++. . +..+. .
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~d~-------------r---~d~L~--------~ 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPSDP-------------R---LDLLA--------I 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eechh-------------H---HHHHH--------H
Confidence 3689999999999999999999875 23334567777743221 11100 0 00110 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~ 182 (604)
.... +. + ....+.++|.||+...+..+.. ..+...+.++++|+++.||..
T Consensus 58 ~~~~-~~---------~---~~a~i~~~DiaGlv~gAs~g~G------lgn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 58 YIKP-EK---------V---PPTTTEFVDIAGLVGGASKGEG------LGNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred HhCC-cC---------c---CCceEEEEeccccccchhcccC------cchHHHHHHHhCCEEEEEEeC
Confidence 1110 00 0 0125789999999887654322 244567889999999988754
No 307
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.2e-05 Score=85.70 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
++-.++||..---|||||...|+..- | |+-+ +.+..++.|--++.++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~-------------------~~~q~q~LDkl~vERE------ 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDN-------------------NIGQEQVLDKLQVERE------ 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCC-------------------CCchhhhhhhhhhhhh------
Confidence 45578999999999999999998542 1 1111 0112222232233221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~ 192 (604)
++-++....-.+........-|.+|||||..++... +.+.+.-++.+||+|+ |+.....|..
T Consensus 106 ----RGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvVD-A~qGvqAQT~ 167 (650)
T KOG0462|consen 106 ----RGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVVD-ASQGVQAQTV 167 (650)
T ss_pred ----cCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEEE-cCcCchHHHH
Confidence 222333333344444422335899999999887543 4556677899988765 5555444433
Q ss_pred H--Hhhh---cceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 193 I--KISR---ERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l--~l~~---~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
. .+|- -.+|.|+||+|+-...-+ ....+...-.-.....+.+++.++.++.++++.+-
T Consensus 168 anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII 231 (650)
T KOG0462|consen 168 ANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAII 231 (650)
T ss_pred HHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHH
Confidence 2 2222 889999999998654322 11111111111123467788888877776555443
No 308
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.09 E-value=1e-05 Score=87.02 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=74.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
--||++||+.|+||||||-+|++.+| |-. ++.|.|-..
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef-~~~--VP~rl~~i~--------------------------------------- 46 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEF-VDA--VPRRLPRIL--------------------------------------- 46 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhc-ccc--ccccCCccc---------------------------------------
Confidence 35899999999999999999999886 221 222222110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec---CCCcchhh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP---ANQDLATS 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~---a~~d~~~~ 190 (604)
++ .. ..|+....++|||+--... +..+.+-++++|+|.++... ...|--..
T Consensus 47 IP---ad----------vtPe~vpt~ivD~ss~~~~-------------~~~l~~EirkA~vi~lvyavd~~~T~D~ist 100 (625)
T KOG1707|consen 47 IP---AD----------VTPENVPTSIVDTSSDSDD-------------RLCLRKEIRKADVICLVYAVDDESTVDRIST 100 (625)
T ss_pred cC---Cc----------cCcCcCceEEEecccccch-------------hHHHHHHHhhcCEEEEEEecCChHHhhhhhh
Confidence 00 00 1233445899999832211 45557788999988765422 22344555
Q ss_pred HHHHhhh--------cceeEEEecccCCCCCCC
Q 007422 191 DAIKISR--------ERTFGVLTKIDLMDKGTD 215 (604)
Q Consensus 191 ~~l~l~~--------~r~i~VltK~D~~~~~~~ 215 (604)
.||-+.+ .|+|+|.||+|..+....
T Consensus 101 ~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 101 KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 6776665 899999999999876543
No 309
>PTZ00099 rab6; Provisional
Probab=98.08 E-value=5.5e-06 Score=78.74 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-h-----cceeEEEecc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-R-----ERTFGVLTKI 207 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-~-----~r~i~VltK~ 207 (604)
..+.||||||..+. ..+...|++.+|++|+|++..+.+ +.. ..++... + .++++|.||+
T Consensus 29 v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERF-------------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHHh-------------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 47899999998654 556778999999999988765532 221 1222221 1 5678999999
Q ss_pred cCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHh
Q 007422 208 DLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYF 259 (604)
Q Consensus 208 D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff 259 (604)
|+.+... ...+... .....+..|+.+++.++.++++++..+.....+.+-+
T Consensus 96 DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 96 DLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred ccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 9864321 1111111 1122345688999999999999988887776665443
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.03 E-value=3.5e-06 Score=81.41 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.-.+|++||-||+||||||..|++..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch
Confidence 45699999999999999999999865
No 311
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.01 E-value=2.1e-05 Score=77.64 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=65.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+|+++|..+|||||..+.+.+.- .|.++. .+|-.+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~--------------------------------------- 40 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKS--------------------------------------- 40 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEE---------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEE---------------------------------------
Confidence 58999999999999999999864 466653 122222111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh---
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~--- 190 (604)
.+...+...+.+||.||....... .....-....++..++|+|++..+.+....
T Consensus 41 ---------------~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 41 ---------------HVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp ---------------EEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred ---------------EEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 122333457899999998654221 001112344688999999887664553321
Q ss_pred --HHHHhhh-----cceeEEEecccCCCCC
Q 007422 191 --DAIKISR-----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 --~~l~l~~-----~r~i~VltK~D~~~~~ 213 (604)
+.+..+. .++.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 2222222 6788899999998643
No 312
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.01 E-value=3.5e-05 Score=75.63 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..+.|+|||--||||+|++..|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 5668999999999999999999864
No 313
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.00 E-value=5.1e-05 Score=69.89 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=37.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhhcceeEEEeccc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRERTFGVLTKID 208 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~~r~i~VltK~D 208 (604)
.++.||||||+... ...++..+|.+|+++.|.-.|.-......+...-=++|+||+|
T Consensus 92 ~D~iiIDtaG~~~~----------------~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQS----------------EVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChh----------------hhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 48999999997542 2357888998888887763332211112222255588999998
No 314
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=2.4e-05 Score=82.07 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=43.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDK 212 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~ 212 (604)
++.||||||-.... ...+.++ ..++ ..++.++||+++....-...+..+..+ ...=+|+||.|....
T Consensus 322 DvVLIDTaGRs~kd--------~~lm~EL-~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET~k 392 (436)
T PRK11889 322 DYILIDTAGKNYRA--------SETVEEM-IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEeCccccCcC--------HHHHHHH-HHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCCCC
Confidence 79999999986531 2233333 2222 246667676544322222223332222 556689999999888
Q ss_pred CCCHHHHHh
Q 007422 213 GTDAADILE 221 (604)
Q Consensus 213 ~~~~~~~l~ 221 (604)
...+..+..
T Consensus 393 ~G~iLni~~ 401 (436)
T PRK11889 393 SGELLKIPA 401 (436)
T ss_pred ccHHHHHHH
Confidence 776666653
No 315
>PRK13796 GTPase YqeH; Provisional
Probab=97.98 E-value=7.2e-06 Score=87.03 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
..++|||.+|+|||||||+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 479999999999999999999754
No 316
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.97 E-value=2.2e-05 Score=79.36 Aligned_cols=106 Identities=25% Similarity=0.276 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+-+.|.+||-+|+||||++|+|+....-|-....||--|.+-+..- +... |+.+ .
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v--------------~d~R---fd~l--------~ 73 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEV--------------PDSR---FDLL--------C 73 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeec--------------CchH---HHHH--------H
Confidence 4568999999999999999999988764444556887774443110 0001 1111 1
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~ 182 (604)
...+.. +.. -..|+++|..|+.+.+..|+. +.+-..+.++.+|+|+-||..
T Consensus 74 ~~Y~~~---~~v----------pa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 74 PIYGPK---SKV----------PAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred HhcCCc---cee----------eeeEEEEeecccccCcccCcC------chHHHHHhhhhccceeEEEEe
Confidence 122210 000 126899999999998876543 356677889999999888744
No 317
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.97 E-value=6.9e-05 Score=80.23 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--hHHHHhhhcceeEEEecccCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~~~l~l~~~r~i~VltK~D~~~~~ 213 (604)
.++.||||||..... ......+..+. ...+++.++||+++....-+. ...+...-..+-+|+||.|....+
T Consensus 183 ~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCCCc
Confidence 389999999975431 11222333322 233577787776543221111 122221226788999999998777
Q ss_pred CCHHHHH
Q 007422 214 TDAADIL 220 (604)
Q Consensus 214 ~~~~~~l 220 (604)
..+..+.
T Consensus 256 G~aLs~~ 262 (429)
T TIGR01425 256 GGALSAV 262 (429)
T ss_pred cHHhhhH
Confidence 6555543
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.96 E-value=3.9e-05 Score=74.95 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=34.6
Q ss_pred hhcceeEEEecccCCCCCC-CHHHHHhC-CccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 196 SRERTFGVLTKIDLMDKGT-DAADILEG-KSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 196 ~~~r~i~VltK~D~~~~~~-~~~~~l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
...+.++|+||+|+.+... ....+... ........++.+++.++.++++++..+..
T Consensus 147 ~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 147 FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999986422 12111110 01112356899999999888877765543
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.95 E-value=2.9e-05 Score=76.69 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=52.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh--hHHHHhhhcceeEEEecccCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--SDAIKISRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~--~~~l~l~~~r~i~VltK~D~~~~~ 213 (604)
+++||-|-|+.... + ....-+|++++++.|...|- .. ...++. .=|+|+||.|.....
T Consensus 123 D~IiiETVGvGQsE--------------~--~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---aDi~vVNKaD~~gA~ 183 (266)
T PF03308_consen 123 DVIIIETVGVGQSE--------------V--DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---ADIFVVNKADRPGAD 183 (266)
T ss_dssp SEEEEEEESSSTHH--------------H--HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----SEEEEE--SHHHHH
T ss_pred CEEEEeCCCCCccH--------------H--HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---ccEEEEeCCChHHHH
Confidence 78999999986631 1 23456899999988876543 22 123343 458999999943221
Q ss_pred C---CHHHHHhCCccccCC----CEEEEEeCChhhhhccccHHHH
Q 007422 214 T---DAADILEGKSYRLKF----PWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 214 ~---~~~~~l~~~~~~l~~----g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
. +....+.-. .+... +.+.+++..+++++++...+..
T Consensus 184 ~~~~~l~~~l~l~-~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 184 RTVRDLRSMLHLL-REREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HHHHHHHHHHHHC-STSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 1 112222111 11123 3455666677788777665443
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.94 E-value=4e-05 Score=71.11 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
...+++++|.+|+||||++|+|.+...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346789999999999999999998654
No 321
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.93 E-value=3.6e-05 Score=71.79 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
|.++++|..|||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999875
No 322
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.93 E-value=9e-06 Score=86.17 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 323
>PRK00098 GTPase RsgA; Reviewed
Probab=97.93 E-value=3.3e-05 Score=79.76 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
-.++++|.+|+|||||+|+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999753
No 324
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=2.5e-05 Score=78.95 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-..+++|..|+|||||+|+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36889999999999999999984
No 325
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.92 E-value=3.4e-05 Score=79.23 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFL 60 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~l 60 (604)
..++++|.+|+|||||+|+|+|....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 57999999999999999999998653
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=3.8e-05 Score=80.28 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=41.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDK 212 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~ 212 (604)
+++||||||.... ....+.++ ..+.. .++.++||+++........+.++... ...-+|+||.|....
T Consensus 287 D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 287 DHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357 (407)
T ss_pred CEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCC
Confidence 7999999998653 12233333 22222 45665565433222222222222222 556788999999887
Q ss_pred CCCHHHHH
Q 007422 213 GTDAADIL 220 (604)
Q Consensus 213 ~~~~~~~l 220 (604)
...+..+.
T Consensus 358 ~G~~Lsv~ 365 (407)
T PRK12726 358 IGDLYTVM 365 (407)
T ss_pred ccHHHHHH
Confidence 76666654
No 327
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.89 E-value=8.3e-05 Score=72.09 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhhcceeEEEecccCCCC-CC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRERTFGVLTKIDLMDK-GT 214 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~~r~i~VltK~D~~~~-~~ 214 (604)
.+.++|.|-|..-... . ...+ ++.+|.++++.+.+............--++|+||+|+.+. ..
T Consensus 92 ~D~iiIEt~G~~l~~~------~--------~~~l--~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~ 155 (199)
T TIGR00101 92 LEMVFIESGGDNLSAT------F--------SPEL--ADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGA 155 (199)
T ss_pred CCEEEEECCCCCcccc------c--------chhh--hCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccc
Confidence 5789999999522111 0 0111 3667777766554332111111111223899999999853 22
Q ss_pred CHHHHHhC-CccccCCCEEEEEeCChhhhhccccHHH
Q 007422 215 DAADILEG-KSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 215 ~~~~~l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+...+.+. +.......++.+++.++++++++.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 22111110 1112356799999999999988777655
No 328
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.88 E-value=4.9e-05 Score=89.43 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhh---hcceeEEEecccC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKIS---RERTFGVLTKIDL 209 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~---~~r~i~VltK~D~ 209 (604)
.|.++||||||.... ..+...+...+|++++|++..+ .+. +.+.+..+ +.|+++|+||+|+
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~~iPiIVViNKiDL 590 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADLAVLVVDINE-GFKPQTIEAINILRQYKTPFVVAANKIDL 590 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHcCCCEEEEEECCCC
Confidence 467999999996443 3344556788999988876443 222 22333333 3799999999998
Q ss_pred CCCCC-----C-----------HHH--------H---HhCC-----------ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 210 MDKGT-----D-----------AAD--------I---LEGK-----------SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 210 ~~~~~-----~-----------~~~--------~---l~~~-----------~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+.-. . ..+ + +... .......++.|++.++.+++++...+..
T Consensus 591 ~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 591 IPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 74211 0 000 1 0000 0111245788999999999988876643
Q ss_pred H
Q 007422 252 R 252 (604)
Q Consensus 252 ~ 252 (604)
.
T Consensus 671 l 671 (1049)
T PRK14845 671 L 671 (1049)
T ss_pred h
Confidence 3
No 329
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.85 E-value=2.1e-05 Score=75.91 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=42.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~~~ 214 (604)
+++||||||...... +..+.++++... + .++-++||+.+.........+..... ...=+|+||.|......
T Consensus 85 D~vlIDT~Gr~~~d~-----~~~~el~~~~~~-~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDE-----ELLEELKKLLEA-L-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLG 157 (196)
T ss_dssp SEEEEEE-SSSSTHH-----HHHHHHHHHHHH-H-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTH
T ss_pred CEEEEecCCcchhhH-----HHHHHHHHHhhh-c-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcc
Confidence 799999999865321 123333333222 2 56667666544332222222222222 45678899999987766
Q ss_pred CHHHHH
Q 007422 215 DAADIL 220 (604)
Q Consensus 215 ~~~~~l 220 (604)
....++
T Consensus 158 ~~l~~~ 163 (196)
T PF00448_consen 158 ALLSLA 163 (196)
T ss_dssp HHHHHH
T ss_pred cceeHH
Confidence 555554
No 330
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=8.2e-05 Score=81.71 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...|-++|+|..-+|||-|+..|-|.++--...|..|- --+..+.....++.. |
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitq----------------------qIgAt~fp~~ni~e~----t 526 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQ----------------------QIGATYFPAENIREK----T 526 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceee----------------------eccccccchHHHHHH----H
Confidence 47899999999999999999999987763222222221 112233333333322 2
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-Ccchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~-~d~~~~ 190 (604)
......++ .....|.+.+|||||.-++ .++-.....-||.+||||+-.. .+..+.
T Consensus 527 k~~~~~~K-----------~~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~aIlvvdImhGlepqti 582 (1064)
T KOG1144|consen 527 KELKKDAK-----------KRLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDLAILVVDIMHGLEPQTI 582 (1064)
T ss_pred HHHHhhhh-----------hhcCCCeeEEecCCCchhh-------------hhhhhccccccceEEEEeehhccCCcchh
Confidence 22211111 1234678999999997665 4444556677999999885443 344555
Q ss_pred HHHHhhh---cceeEEEecccCC
Q 007422 191 DAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~ 210 (604)
+.+.+.+ .|.|+.+||+|.+
T Consensus 583 ESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHHHhcCCCeEEeehhhhhh
Confidence 6666666 8999999999976
No 331
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=3.3e-05 Score=87.70 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=74.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC-------CcceeeeccCCCCccCChHHHHHHHH
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEIQ 108 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i~ 108 (604)
.|++||.+|+||||++..|.+.-..-.|.. .+.+...+.. -..|++....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k-------kV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGAD-------QLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCC-------eEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 578999999999999999998632111110 0111111110 01222222222222234444433332
Q ss_pred HhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch
Q 007422 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (604)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~ 188 (604)
. .. ..+++||||||...... ...+.+..+.. ...++-++||+++....-.
T Consensus 260 ~----~~-------------------~~D~VLIDTAGRs~~d~-----~l~eel~~l~~--~~~p~e~~LVLsAt~~~~~ 309 (767)
T PRK14723 260 A----LG-------------------DKHLVLIDTVGMSQRDR-----NVSEQIAMLCG--VGRPVRRLLLLNAASHGDT 309 (767)
T ss_pred H----hc-------------------CCCEEEEeCCCCCccCH-----HHHHHHHHHhc--cCCCCeEEEEECCCCcHHH
Confidence 1 11 12789999999865321 12233322211 2345566666544332111
Q ss_pred hhHHHHhhh-----cceeEEEecccCCCCCCCHHHHHh
Q 007422 189 TSDAIKISR-----ERTFGVLTKIDLMDKGTDAADILE 221 (604)
Q Consensus 189 ~~~~l~l~~-----~r~i~VltK~D~~~~~~~~~~~l~ 221 (604)
..+..+..+ ..+=+|+||.|.......+.++..
T Consensus 310 l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 310 LNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 122222221 345689999999888776666654
No 332
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=2.3e-05 Score=82.50 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
--.++++|++|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999875
No 333
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=3.2e-05 Score=82.73 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~~ 213 (604)
.++.+|||+|...... ...+.+..+. ....+.-.+||+.+....-...++..... ...=+|+||.|.....
T Consensus 270 ~d~VLIDTaGrsqrd~-----~~~~~l~~l~--~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ-----MLAEQIAMLS--QCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASL 342 (420)
T ss_pred CCEEEecCCCCCcchH-----HHHHHHHHHh--ccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCc
Confidence 3789999999875311 1222332221 11234445565544322222233333333 5566799999998877
Q ss_pred CCHHHHHh
Q 007422 214 TDAADILE 221 (604)
Q Consensus 214 ~~~~~~l~ 221 (604)
..+.+++.
T Consensus 343 G~~l~~~~ 350 (420)
T PRK14721 343 GIALDAVI 350 (420)
T ss_pred cHHHHHHH
Confidence 66666653
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.81 E-value=0.00039 Score=72.24 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHH---Hhh-cCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR---SYI-EKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~---~~i-~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~ 209 (604)
.+++||||||....... ..+.+..+.+ ..+ ..++-.+||+.+....-....+....+ ...-+|+||.|.
T Consensus 197 ~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~ 271 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDG 271 (318)
T ss_pred CCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 38999999998654221 2233333321 212 246667676654432211122222211 466789999998
Q ss_pred CCCCCCHHHHH
Q 007422 210 MDKGTDAADIL 220 (604)
Q Consensus 210 ~~~~~~~~~~l 220 (604)
...+.....++
T Consensus 272 t~~~G~~l~~~ 282 (318)
T PRK10416 272 TAKGGVVFAIA 282 (318)
T ss_pred CCCccHHHHHH
Confidence 87776666655
No 335
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=2.5e-05 Score=71.54 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH-HH-Hh------hhcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD-AI-KI------SRERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~-~l-~l------~~~r~i~VltK 206 (604)
..+.|||+-|--. .++++..|...+|+||+++++.+.+ +..+. .+ .. .+.|.++..||
T Consensus 69 ~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 69 APLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 3689999998543 3899999999999999998877743 22111 11 11 11899999999
Q ss_pred ccCCCCCC--CHHHHHh-CCcc-ccCCCEEEEEeCChhhhhccccHHHH
Q 007422 207 IDLMDKGT--DAADILE-GKSY-RLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 207 ~D~~~~~~--~~~~~l~-~~~~-~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
-|+-+..+ +...++. .... .-...+.+|++..++++++.+.+...
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence 99865433 1222222 1112 22356788888888888887776654
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=97.79 E-value=0.00011 Score=76.63 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=44.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~ 210 (604)
++.||||||...... .....++.+.+ .-++|.++||+++ ... ++++..++ ...-+|+||.|..
T Consensus 224 DvVLIDTaGr~~~~~-----~lm~eL~~i~~--~~~pd~~iLVl~a-~~g---~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 224 DVVLIDTAGRMHTDA-----NLMDELKKIVR--VTKPDLVIFVGDA-LAG---NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CEEEEECCCccCCcH-----HHHHHHHHHHH--hhCCceEEEeecc-ccc---hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 799999999876321 13334433322 2357877776654 322 12222222 5677899999998
Q ss_pred CCCCCHHHHH
Q 007422 211 DKGTDAADIL 220 (604)
Q Consensus 211 ~~~~~~~~~l 220 (604)
..+..+..+.
T Consensus 293 ~~~G~~ls~~ 302 (336)
T PRK14974 293 AKGGAALSIA 302 (336)
T ss_pred CCccHHHHHH
Confidence 8776665554
No 337
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=8.9e-05 Score=80.55 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.-.++++|.-.+|||+|+..|.+... |...... +..++ ++|.--. ..
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~-----e~~lr-------------------ytD~l~~--------E~ 174 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNT-----EADLR-------------------YTDTLFY--------EQ 174 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-ccccccc-----ccccc-------------------ccccchh--------hH
Confidence 34688999999999999999998864 5543211 11111 1110000 00
Q ss_pred hcCCCCcccCccEEEEEecCCCC--CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVV--NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~--~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~ 190 (604)
.++-++...+..+-+...... -++++||||...+. +-+...++.+|.++++++.+.. -+.+.
T Consensus 175 --eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~-------------DE~ta~l~~sDgvVlvvDv~EGVmlntE 239 (971)
T KOG0468|consen 175 --ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS-------------DETTASLRLSDGVVLVVDVAEGVMLNTE 239 (971)
T ss_pred --hcCceEeecceEEEEecCcCceeeeeeecCCCcccch-------------HHHHHHhhhcceEEEEEEcccCceeeHH
Confidence 122334444555544443332 37999999998763 2234557889999998876654 34445
Q ss_pred HHHHhhh---cceeEEEecccCC
Q 007422 191 DAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 191 ~~l~l~~---~r~i~VltK~D~~ 210 (604)
..++.+- .++.+|+||+|.+
T Consensus 240 r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 240 RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHHHhccCcEEEEEehhHHH
Confidence 5555554 8899999999975
No 338
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.78 E-value=3.8e-05 Score=68.97 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-..||++|.--+|||||+=....-+|-- ..+..+...+..
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~------------------------------------kHlsTlQASF~~---- 52 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC------------------------------------KHLSTLQASFQN---- 52 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch------------------------------------hhHHHHHHHHhh----
Confidence 3579999999999999998888777610 011111111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~ 191 (604)
.. +.+.+ ...+|.||||.|-.++..-+ --|.+.+|..+||.+-.+.|.- ...
T Consensus 53 ----------kk--~n~ed-~ra~L~IWDTAGQErfHALG-------------PIYYRgSnGalLVyDITDrdSFqKVKn 106 (218)
T KOG0088|consen 53 ----------KK--VNVED-CRADLHIWDTAGQERFHALG-------------PIYYRGSNGALLVYDITDRDSFQKVKN 106 (218)
T ss_pred ----------cc--ccccc-ceeeeeeeeccchHhhhccC-------------ceEEeCCCceEEEEeccchHHHHHHHH
Confidence 11 11222 23489999999987653322 2488999999998744333211 111
Q ss_pred HHHhhh------cceeEEEecccCCCC
Q 007422 192 AIKISR------ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~------~r~i~VltK~D~~~~ 212 (604)
|....+ .-.++|.||+|+-.+
T Consensus 107 WV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 107 WVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred HHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 211111 567889999998644
No 339
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.78 E-value=1.9e-05 Score=83.79 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.-+|.+||=||+||||+||+|.|.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 45789999999999999999999986
No 340
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.0002 Score=72.40 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=43.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~ 211 (604)
.++.||||||-.... ...++++. .++ -+++.++||+.+....-...+.++..+ ...=+|+||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~--------~~~l~el~-~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRA--------SETVEEMI-ETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCC--------HHHHHHHH-HHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecCCC
Confidence 378999999986431 22333332 222 246666666544333222223333333 55667999999988
Q ss_pred CCCCHHHHH
Q 007422 212 KGTDAADIL 220 (604)
Q Consensus 212 ~~~~~~~~l 220 (604)
....+..+.
T Consensus 226 ~~G~~l~~~ 234 (270)
T PRK06731 226 SSGELLKIP 234 (270)
T ss_pred CccHHHHHH
Confidence 776666654
No 341
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.76 E-value=6.4e-05 Score=78.85 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=44.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH-HHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-IKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~-l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.+|||||..++... +.+.++-.|.++|+|++.......... ++.|- -+-|+|+||+|.-+
T Consensus 68 ~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 TRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred eEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence 47899999999887443 445566678898888766544432222 22221 78899999999876
Q ss_pred CCC
Q 007422 212 KGT 214 (604)
Q Consensus 212 ~~~ 214 (604)
..-
T Consensus 135 Arp 137 (603)
T COG1217 135 ARP 137 (603)
T ss_pred CCH
Confidence 543
No 342
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=8.8e-05 Score=80.76 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-..|+++|..|+||||++..|.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999864
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.70 E-value=0.0011 Score=67.58 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=43.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc-----CCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEeccc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-----KPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKID 208 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~-----~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D 208 (604)
.++.||||||..... ......+..+. +.+. .+|.++||+.+....-....+....+ ...-+|+||+|
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~-~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIK-RVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHH-HHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 379999999986531 11223333332 2222 37778777655322111112222221 46678999999
Q ss_pred CCCCCCCHHHHH
Q 007422 209 LMDKGTDAADIL 220 (604)
Q Consensus 209 ~~~~~~~~~~~l 220 (604)
..........+.
T Consensus 229 e~~~~G~~l~~~ 240 (272)
T TIGR00064 229 GTAKGGIILSIA 240 (272)
T ss_pred CCCCccHHHHHH
Confidence 988776555554
No 344
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.00019 Score=77.62 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=42.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh--cceeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR--ERTFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~--~r~i~VltK~D~~~~ 212 (604)
.++.||||||...... .....+..++.. ...+.-++|| .+++... ...++..... ...-+|+||+|....
T Consensus 300 ~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~-~~~~~~~~LV-l~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDK-----RLIEELKALIEF-SGEPIDVYLV-LSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCH-----HHHHHHHHHHhc-cCCCCeEEEE-EECCCCHHHHHHHHHHhCCCCCCEEEEeccccccc
Confidence 4899999999855321 122333344331 1234444454 4444432 2233333333 334588999998776
Q ss_pred CCCHHHHHh
Q 007422 213 GTDAADILE 221 (604)
Q Consensus 213 ~~~~~~~l~ 221 (604)
.....+++.
T Consensus 373 ~G~i~~~~~ 381 (424)
T PRK05703 373 LGSILSLLI 381 (424)
T ss_pred ccHHHHHHH
Confidence 655555543
No 345
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.0003 Score=76.01 Aligned_cols=99 Identities=20% Similarity=0.341 Sum_probs=59.5
Q ss_pred CCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--------hhhHHHHhhh----cce
Q 007422 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISR----ERT 200 (604)
Q Consensus 133 ~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--------~~~~~l~l~~----~r~ 200 (604)
+.-..++|+|+||+-++. .+|+ .-+..+|+.||||+.....+ .+.+...+++ ...
T Consensus 252 s~~~~~tliDaPGhkdFi------------~nmi-~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ql 318 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFI------------PNMI-SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQL 318 (603)
T ss_pred cCceeEEEecCCCccccc------------hhhh-ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceE
Confidence 445589999999965542 3333 33567898888876533211 1223333333 889
Q ss_pred eEEEecccCCCCCCCHHHHHhCC---------ccc-cCCCEEEEEeCChhhhhc
Q 007422 201 FGVLTKIDLMDKGTDAADILEGK---------SYR-LKFPWIGVVNRSQADINK 244 (604)
Q Consensus 201 i~VltK~D~~~~~~~~~~~l~~~---------~~~-l~~g~~~v~~~s~~~i~~ 244 (604)
|+++||+|+++=..+..+.+.+. .+. -...|++++..+++++..
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 99999999997544322222111 111 123789999888877643
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.65 E-value=0.0034 Score=63.12 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh---HHHHhhhcceeEEEecccCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~---~~l~l~~~r~i~VltK~D~~~~~ 213 (604)
++.||-|-|+..... .-..-+|+++++..|...|-..- ..+. .-=|+|+||.|.-+..
T Consensus 145 DvIIVETVGvGQsev----------------~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---iaDi~vINKaD~~~A~ 205 (323)
T COG1703 145 DVIIVETVGVGQSEV----------------DIANMADTFLVVMIPGAGDDLQGIKAGIME---IADIIVINKADRKGAE 205 (323)
T ss_pred CEEEEEecCCCcchh----------------HHhhhcceEEEEecCCCCcHHHHHHhhhhh---hhheeeEeccChhhHH
Confidence 789999999866421 12344889988877765442211 2233 3348999999943321
Q ss_pred CCH---HHHHhCC-ccccCCCE----EEEEeCChhhhhccccHHHH
Q 007422 214 TDA---ADILEGK-SYRLKFPW----IGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 214 ~~~---~~~l~~~-~~~l~~g~----~~v~~~s~~~i~~~~~~~~~ 251 (604)
..+ ...+.-. ...-..|| +..++..++++++++..+..
T Consensus 206 ~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 206 KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 111 1111111 11223344 56666677888877776554
No 347
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0002 Score=74.79 Aligned_cols=132 Identities=17% Similarity=0.330 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh--CCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV--GKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~--G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
..-+.+||-.|-||||||-+.|+ |..+ +..|.+..+- .......|+-++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~rk--------------------~~~~a~SDWM~iEkq---- 64 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGRK--------------------SGKHAKSDWMEIEKQ---- 64 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchh--hhcceeeecc--------------------CCcccccHHHHHHHh----
Confidence 34578999999999999999986 3322 1112111100 011122344444432
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLAT 189 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~ 189 (604)
++-+++..++... .. ..-+.|+||||.-+++.. +.+-+...|+.+.|+++|.. ...+
T Consensus 65 ------RGISVtsSVMqF~--Y~-~~~iNLLDTPGHeDFSED-------------TYRtLtAvDsAvMVIDaAKGiE~qT 122 (528)
T COG4108 65 ------RGISVTSSVMQFD--YA-DCLVNLLDTPGHEDFSED-------------TYRTLTAVDSAVMVIDAAKGIEPQT 122 (528)
T ss_pred ------cCceEEeeEEEec--cC-CeEEeccCCCCccccchh-------------HHHHHHhhheeeEEEecccCccHHH
Confidence 2233333333222 22 336899999999887422 44556678888777766553 2333
Q ss_pred hHHHHhhh---cceeEEEecccCCCC
Q 007422 190 SDAIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 190 ~~~l~l~~---~r~i~VltK~D~~~~ 212 (604)
...+...+ .|++-.+||+|....
T Consensus 123 ~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 123 LKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHHHhhcCCceEEEeeccccccC
Confidence 33444444 899999999997644
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=8.5e-05 Score=75.70 Aligned_cols=143 Identities=26% Similarity=0.380 Sum_probs=77.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc----cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI----VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~----~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
+++|+|.--+|||||+--|+... |-.|.|- .-|.|-+++-.++..-+.+. ...+...++.++++-+..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~ev--lGFd~~g~vVNY~~~~ta----- 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEV--LGFDNRGKVVNYAQNMTA----- 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhc--ccccccccccchhhcccH-----
Confidence 79999999999999999998766 4555552 23444444432222111111 111111222222221100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~ 189 (604)
+++.. ....-++|+|+.|..+.-.. .+.. ...| .+|+.+|+|. |+. .+++
T Consensus 241 EEi~e----------------~SSKlvTfiDLAGh~kY~~T--------Ti~g-LtgY--~Ph~A~LvVs-A~~Gi~~tT 292 (591)
T KOG1143|consen 241 EEIVE----------------KSSKLVTFIDLAGHAKYQKT--------TIHG-LTGY--TPHFACLVVS-ADRGITWTT 292 (591)
T ss_pred HHHHh----------------hhcceEEEeecccchhhhee--------eeee-cccC--CCceEEEEEE-cCCCCcccc
Confidence 00000 01114799999998653111 0000 1122 3677777654 444 3556
Q ss_pred hHHHHhhh---cceeEEEecccCCCCCC
Q 007422 190 SDAIKISR---ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 190 ~~~l~l~~---~r~i~VltK~D~~~~~~ 214 (604)
.+-|.++. .|.++++||+|+.++..
T Consensus 293 rEHLgl~~AL~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 293 REHLGLIAALNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHHHHHHhCCCeEEEEEeeccccchh
Confidence 66666655 99999999999998754
No 349
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00041 Score=61.37 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=59.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch---hhHHHHhhh------cceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA---TSDAIKISR------ERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~---~~~~l~l~~------~r~i~VltK~ 207 (604)
.+.++|..|-.+ ++.+++.|......+|+|++++..|-- ..+..+... .+.++..||-
T Consensus 62 kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQ 128 (180)
T KOG0071|consen 62 KFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQ 128 (180)
T ss_pred EEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCc
Confidence 577899988755 488999999999999999988776422 122222222 6677788999
Q ss_pred cCCCCCC--CHHHHHhCCccccCCCEEEE--EeCChhhhhccccHH
Q 007422 208 DLMDKGT--DAADILEGKSYRLKFPWIGV--VNRSQADINKNVDMI 249 (604)
Q Consensus 208 D~~~~~~--~~~~~l~~~~~~l~~g~~~v--~~~s~~~i~~~~~~~ 249 (604)
|+.+.-. +..+.++-+. --...|+.. .+.+++++.+.++.+
T Consensus 129 Dlp~A~~pqei~d~leLe~-~r~~~W~vqp~~a~~gdgL~eglswl 173 (180)
T KOG0071|consen 129 DLPDAMKPQEIQDKLELER-IRDRNWYVQPSCALSGDGLKEGLSWL 173 (180)
T ss_pred ccccccCHHHHHHHhcccc-ccCCccEeeccccccchhHHHHHHHH
Confidence 9876543 2344443222 122346533 223344444444433
No 350
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00041 Score=73.75 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=42.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCCcc-hhhHHHHhhh--cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPANQDL-ATSDAIKISR--ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~---~~d~iIl~v~~a~~d~-~~~~~l~l~~--~r~i~VltK~D~ 209 (604)
.++.||||||..... ..++.++ ..++. ...-++||+ +++... ...+.+.... ...=+|+||.|.
T Consensus 255 ~DlVLIDTaGr~~~~--------~~~l~el-~~~l~~~~~~~e~~LVl-sat~~~~~~~~~~~~~~~~~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKD--------FMKLAEM-KELLNACGRDAEFHLAV-SSTTKTSDVKEIFHQFSPFSYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccC--------HHHHHHH-HHHHHhcCCCCeEEEEE-cCCCCHHHHHHHHHHhcCCCCCEEEEEeccC
Confidence 379999999986421 1122222 22222 222455655 444432 2223333333 467789999999
Q ss_pred CCCCCCHHHHHh
Q 007422 210 MDKGTDAADILE 221 (604)
Q Consensus 210 ~~~~~~~~~~l~ 221 (604)
......+..++.
T Consensus 325 t~~~G~~l~~~~ 336 (388)
T PRK12723 325 TTCVGNLISLIY 336 (388)
T ss_pred CCcchHHHHHHH
Confidence 887776666653
No 351
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00027 Score=74.53 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.-...+|..---|||||-..|+..- +..+. .+.+..+.+.++-
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~-------------------------------Rem~~Q~LDsMdi 51 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELT------GGLSE-------------------------------REMRAQVLDSMDI 51 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------cCcCh-------------------------------HHHHHHhhhhhhh
Confidence 4456777888899999999998542 11111 1122222222221
Q ss_pred hcCCCCcccCccEEEEEecCC--CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
..-++-++-...+.+.....+ ...|.||||||..+++.. +.+.+..|...+|+| +|.+.+..|.
T Consensus 52 ERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvV-DAsQGveAQT 117 (603)
T COG0481 52 ERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVV-DASQGVEAQT 117 (603)
T ss_pred HhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEE-ECccchHHHH
Confidence 122344455566666666543 345899999999887644 334456677777766 4555555443
Q ss_pred HHH--hh--h-cceeEEEecccCCCCCCC-HHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHH
Q 007422 192 AIK--IS--R-ERTFGVLTKIDLMDKGTD-AADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 192 ~l~--l~--~-~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
... +| . --+|-|+||+|+-...-+ ...-++. ...+. ..-+.+++.++.+++++++.+...
T Consensus 118 lAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~-~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 118 LANVYLALENNLEIIPVLNKIDLPAADPERVKQEIED-IIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHH-HhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 221 11 1 667889999998654322 1111111 11111 246788999999988877665544
No 352
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00031 Score=73.84 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhH---HHHhhh-cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSD---AIKISR-ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~---~l~l~~-~r~i~VltK~D~~ 210 (604)
.++|||.||.-+ .+.+|+ .-+...|+.+|+|. ++. +..+-+ ++.+.. .+.++|+||+|..
T Consensus 51 ~~~fIDvpgh~~------------~i~~mi-ag~~~~d~alLvV~-~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 51 VMGFIDVPGHPD------------FISNLL-AGLGGIDYALLVVA-ADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred ceEEeeCCCcHH------------HHHHHH-hhhcCCceEEEEEe-CccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 589999999754 334444 33556788878764 443 333333 344444 7789999999998
Q ss_pred CCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 211 DKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 211 ~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++.. ...+++.... .-...++.++..++++++++...+....
T Consensus 117 d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 117 DEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 7642 1223333322 1124567788888888888777665544
No 353
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.55 E-value=0.00058 Score=60.49 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.--+|.+.|--||||+|+|..|.|.+. +.- |
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~--~hl---t-------------------------------------------- 46 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP--RHL---T-------------------------------------------- 46 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh--hhc---c--------------------------------------------
Confidence 446899999999999999999999874 221 1
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch---h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA---T 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~---~ 189 (604)
.+++|+.. .+.+.+...|+++|..|-... +..+..|..+.|.+|+|+++++.... .
T Consensus 47 ----pT~GFn~k----~v~~~g~f~LnvwDiGGqr~I-------------RpyWsNYyenvd~lIyVIDS~D~krfeE~~ 105 (185)
T KOG0074|consen 47 ----PTNGFNTK----KVEYDGTFHLNVWDIGGQRGI-------------RPYWSNYYENVDGLIYVIDSTDEKRFEEIS 105 (185)
T ss_pred ----ccCCcceE----EEeecCcEEEEEEecCCcccc-------------chhhhhhhhccceEEEEEeCCchHhHHHHH
Confidence 12233321 133334457999999986543 67789999999999999875543221 1
Q ss_pred hHHHH------hhhcceeEEEecccCCCCC
Q 007422 190 SDAIK------ISRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 190 ~~~l~------l~~~r~i~VltK~D~~~~~ 213 (604)
++... ++..|+.+-.||-|++...
T Consensus 106 ~el~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 106 EELVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred HHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 22222 2237888888999987543
No 354
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.53 E-value=0.00041 Score=84.36 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 4 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
+..+-.+++++...+....... ......+|=.+|||++||||||+|+.- |.+| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~--~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGG--RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccC--chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 4456777888888887543111 112358999999999999999999998 8775 554
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00044 Score=73.55 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=43.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~ 211 (604)
.++.||||||...... ...+.+..+.. ... .+.-.+||+++........++..... ...=+|+||.|...
T Consensus 300 ~D~VLIDTaGr~~rd~-----~~l~eL~~~~~-~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAGYSHRNL-----EQLERMQSFYS-CFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCCCCccCH-----HHHHHHHHHHH-hhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 3789999999864321 12222222222 221 23345565544333223333333333 66778999999988
Q ss_pred CCCCHHHHH
Q 007422 212 KGTDAADIL 220 (604)
Q Consensus 212 ~~~~~~~~l 220 (604)
....+..+.
T Consensus 374 ~~G~il~i~ 382 (432)
T PRK12724 374 FLGSFLELA 382 (432)
T ss_pred CccHHHHHH
Confidence 776666665
No 356
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.49 E-value=0.00011 Score=73.70 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.-+.+.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 56899999999999999999997654
No 357
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00037 Score=70.10 Aligned_cols=175 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|.+||..--|||||..||+|.-.- ....-.++-+.|+|...+.. -|..........+.+ +..-..+
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~--~hseElkRgitIkLGYAd~~--i~kC~~c~~~~~y~~---------~~~C~~c 78 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTD--RHSEELKRGITIKLGYADAK--IYKCPECYRPECYTT---------EPKCPNC 78 (415)
T ss_pred Eeeeeeecccchhhheehhhceeee--chhHHHhcCcEEEeccccCc--eEeCCCCCCCccccc---------CCCCCCC
Confidence 5889999999999999999997531 11223566677776544321 000000000000000 0000001
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc---hhh--
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---ATS-- 190 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~---~~~-- 190 (604)
|.. ..-...++|||.||..- .+..|. +-..--|..+|++ +||... .+.
T Consensus 79 g~~-------------~~l~R~VSfVDaPGHe~------------LMATML-sGAAlMDgAlLvI-aANEpcPQPQT~EH 131 (415)
T COG5257 79 GAE-------------TELVRRVSFVDAPGHET------------LMATML-SGAALMDGALLVI-AANEPCPQPQTREH 131 (415)
T ss_pred CCC-------------ccEEEEEEEeeCCchHH------------HHHHHh-cchhhhcceEEEE-ecCCCCCCCchHHH
Confidence 100 00012589999999632 112221 1111236666654 555432 222
Q ss_pred -HHHHhhh-cceeEEEecccCCCCCCCH------HHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 -DAIKISR-ERTFGVLTKIDLMDKGTDA------ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 -~~l~l~~-~r~i~VltK~D~~~~~~~~------~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++.... +.+|+|-||+|++++.... .+++.| ...-+.+.+.+++.-..+++.+++.++.
T Consensus 132 l~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG-t~Ae~aPIIPiSA~~~~NIDal~e~i~~ 199 (415)
T COG5257 132 LMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG-TVAENAPIIPISAQHKANIDALIEAIEK 199 (415)
T ss_pred HHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc-cccCCCceeeehhhhccCHHHHHHHHHH
Confidence 2344444 8999999999999865421 223322 2233346677776666666666655543
No 358
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00036 Score=69.37 Aligned_cols=127 Identities=17% Similarity=0.347 Sum_probs=77.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-.|..||...-|||||.-||++. +.-.+ .....+++++.+.-++
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~-la~~~------------------------------~~~~~~y~~id~aPeE----- 56 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTV-LAKKG------------------------------GAEAKAYDQIDNAPEE----- 56 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHH-HHhhc------------------------------cccccchhhhccCchH-----
Confidence 36889999999999999999874 11111 1122233333221111
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAI 193 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l 193 (604)
+..+++-++-.++....+ .+...||.||..+ .+++|+.... +.|..||||.+++... .+.+-+
T Consensus 57 --k~rGITIntahveyet~~-rhyahVDcPGHaD------------YvKNMItgAa-qmDgAILVVsA~dGpmPqTrEHi 120 (394)
T COG0050 57 --KARGITINTAHVEYETAN-RHYAHVDCPGHAD------------YVKNMITGAA-QMDGAILVVAATDGPMPQTREHI 120 (394)
T ss_pred --hhcCceeccceeEEecCC-ceEEeccCCChHH------------HHHHHhhhHH-hcCccEEEEEcCCCCCCcchhhh
Confidence 122333333344444443 3789999999754 4577766543 5677778777666543 344445
Q ss_pred Hhhh----cceeEEEecccCCCCC
Q 007422 194 KISR----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 194 ~l~~----~r~i~VltK~D~~~~~ 213 (604)
-+++ ..+++++||+|+++..
T Consensus 121 LlarqvGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 121 LLARQVGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhhcCCcEEEEEEecccccCcH
Confidence 5555 6788899999999854
No 359
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.00041 Score=68.28 Aligned_cols=131 Identities=21% Similarity=0.352 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
...|..||..|-|||||++.|.+..| ++.+|+..--.+.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~----------------------------------- 83 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQA----------------------------------- 83 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeec-----------------------------------
Confidence 34699999999999999999999886 1122222110111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCC-CccHHHHHHHHHHHhhc---------------CCCeEE
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIE---------------KPNCII 177 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q-~~~~~~~i~~~~~~~i~---------------~~d~iI 177 (604)
.+......-+. ..|++|||-|+.+.-..+. -.-+.+.+......|++ +.++.+
T Consensus 84 ---~TyelqEsnvr--------lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CL 152 (406)
T KOG3859|consen 84 ---NTYELQESNVR--------LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCL 152 (406)
T ss_pred ---chhhhhhcCee--------EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Confidence 00000001111 2589999999976544322 23356666666666654 246667
Q ss_pred EEEecCCCcchhhHHHHhhh----cceeEEEecccCCCCC
Q 007422 178 LAISPANQDLATSDAIKISR----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 178 l~v~~a~~d~~~~~~l~l~~----~r~i~VltK~D~~~~~ 213 (604)
++++|....+...+.+.+-+ .++|-|+-|.|.+...
T Consensus 153 YFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 153 YFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKADTISKE 192 (406)
T ss_pred EEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHhhhhhHH
Confidence 77888877776666554443 7788899999987654
No 360
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.41 E-value=3.8e-05 Score=66.93 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=65.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchh-hHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLAT-SDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~-~~~l~l~~------~r~i~VltK~D 208 (604)
.|.+|||.|..++ ++.+..|.+.+|+++|+.+-+|. .+.+ +.|+.... ....++.||+|
T Consensus 48 klqiwdtagqerf-------------rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d 114 (192)
T KOG0083|consen 48 KLQIWDTAGQERF-------------RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCD 114 (192)
T ss_pred EEEEeeccchHHH-------------hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccc
Confidence 6899999997654 78889999999999998766664 2222 33443332 66788999999
Q ss_pred CCCCCC----CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+..+.. +-..+. ...+.+|...++.++-+++--+..+.
T Consensus 115 ~a~er~v~~ddg~kla----~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 115 LAHERAVKRDDGEKLA----EAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred cchhhccccchHHHHH----HHHCCCceeccccccccHhHHHHHHH
Confidence 965321 222222 23457899999998877765444333
No 361
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00042 Score=74.00 Aligned_cols=63 Identities=22% Similarity=0.434 Sum_probs=42.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhHHHHhhh----cceeEEEeccc
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISR----ERTFGVLTKID 208 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~~l~l~~----~r~i~VltK~D 208 (604)
...+||+..|. + + ..| -...+-+|.++|.+ ++|. ...+.+.|.++. .|++||+|..|
T Consensus 112 ~RRiTflEcp~--D---------l----~~m-iDvaKIaDLVlLlI-dgnfGfEMETmEFLnil~~HGmPrvlgV~ThlD 174 (1077)
T COG5192 112 TRRITFLECPS--D---------L----HQM-IDVAKIADLVLLLI-DGNFGFEMETMEFLNILISHGMPRVLGVVTHLD 174 (1077)
T ss_pred eeEEEEEeChH--H---------H----HHH-HhHHHhhheeEEEe-ccccCceehHHHHHHHHhhcCCCceEEEEeecc
Confidence 34688888882 2 1 111 13345588887754 5555 456677777766 89999999999
Q ss_pred CCCCCC
Q 007422 209 LMDKGT 214 (604)
Q Consensus 209 ~~~~~~ 214 (604)
+....+
T Consensus 175 lfk~~s 180 (1077)
T COG5192 175 LFKNPS 180 (1077)
T ss_pred cccChH
Confidence 987654
No 362
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.35 E-value=0.0036 Score=59.03 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=41.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH-HHhhh--cceeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-IKISR--ERTFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~-l~l~~--~r~i~VltK~D~~~~ 212 (604)
.++.++||||...... .....+..+. ....++.+++|+.+. ......+. ....+ .-.-+|+||+|....
T Consensus 83 ~d~viiDt~g~~~~~~-----~~l~~l~~l~--~~~~~~~~~lVv~~~-~~~~~~~~~~~~~~~~~~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDE-----NLMEELKKIK--RVVKPDEVLLVVDAM-TGQDAVNQAKAFNEALGITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhH-----HHHHHHHHHH--hhcCCCeEEEEEECC-CChHHHHHHHHHHhhCCCCEEEEECCcCCCC
Confidence 3689999999864311 1222232221 123478888877653 32222222 12211 446678999998877
Q ss_pred CCCHHHH
Q 007422 213 GTDAADI 219 (604)
Q Consensus 213 ~~~~~~~ 219 (604)
......+
T Consensus 155 ~g~~~~~ 161 (173)
T cd03115 155 GGAALSI 161 (173)
T ss_pred cchhhhh
Confidence 6655443
No 363
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00072 Score=61.70 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=46.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch-----hhHHH----HhhhcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAI----KISRERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~-----~~~~l----~l~~~r~i~VltK~ 207 (604)
..+-+|+.|.... +..++.|+..+|+|++.|+..+.+.- ..+++ .++..|.++..||+
T Consensus 65 ~ftt~DLGGH~qA-------------rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKI 131 (193)
T KOG0077|consen 65 TFTTFDLGGHLQA-------------RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKI 131 (193)
T ss_pred eEEEEccccHHHH-------------HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence 5788999997543 77899999999999999877664321 11211 13448999999999
Q ss_pred cCCCCC
Q 007422 208 DLMDKG 213 (604)
Q Consensus 208 D~~~~~ 213 (604)
|.....
T Consensus 132 d~p~a~ 137 (193)
T KOG0077|consen 132 DIPYAA 137 (193)
T ss_pred cCCCcc
Confidence 986554
No 364
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.26 E-value=0.00034 Score=72.41 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 14 ACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
+...+|..+....++ ..-++.|||=+|+|||||||+|.....-|+|..
T Consensus 236 l~~~lgny~~~~~lk----~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 236 LMKVLGNYCRKGELK----TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred HHHHhcCcccccccC----cceEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 445566654333333 445899999999999999999998887566543
No 365
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.22 E-value=0.0012 Score=67.22 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=35.6
Q ss_pred hcceeEEEecccCCCCCC-CHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 197 RERTFGVLTKIDLMDKGT-DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 197 ~~r~i~VltK~D~~~~~~-~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
...-++|+||+|+++... +...++... ........+.++++++++++.+.+++..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 366799999999986422 333332211 1222356889999999888877776644
No 366
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0018 Score=62.89 Aligned_cols=81 Identities=25% Similarity=0.466 Sum_probs=54.8
Q ss_pred CceEeeC-CCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH-Hhhh----cceeEEEecccCC
Q 007422 137 NLTLIDL-PGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI-KISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDt-PGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l-~l~~----~r~i~VltK~D~~ 210 (604)
++++||| .|+-. +-+.-++.+|.+|.|++|+...+.+.+.. +++. +|+.+|+||+|.-
T Consensus 135 e~VivDtEAGiEH----------------fgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEH----------------FGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhh----------------hccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 6888888 67643 33456788999999998887777666543 3443 8999999999954
Q ss_pred CCCCCHHHHHhCCccccCCCEEEEEeCCh
Q 007422 211 DKGTDAADILEGKSYRLKFPWIGVVNRSQ 239 (604)
Q Consensus 211 ~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 239 (604)
. ..+......+++.+.++.+.++
T Consensus 199 --e----~~~~~~~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 199 --E----ELLRELAEELGLEVLGVIPYDP 221 (255)
T ss_pred --h----HHHHhhhhccCCeEEEEccCCH
Confidence 1 1222233455666778877664
No 367
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0025 Score=56.79 Aligned_cols=105 Identities=13% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc---hhhHHHHhhh------cceeEEEe
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKISR------ERTFGVLT 205 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~---~~~~~l~l~~------~r~i~Vlt 205 (604)
...+.++|+-|-.+. +-.++.|..+.|++|+||+.++.|- +..+...+.. ...+++.|
T Consensus 61 NLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~an 127 (182)
T KOG0072|consen 61 NLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFAN 127 (182)
T ss_pred cccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEec
Confidence 347899999998764 6779999999999999999888652 2223322222 66778899
Q ss_pred cccCCCCCC--CHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHH
Q 007422 206 KIDLMDKGT--DAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 206 K~D~~~~~~--~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|.|....-+ ++...+.-...+.+ .-.|..++..+.+++...+++..-
T Consensus 128 KqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 128 KQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred cccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence 999764433 12222211111111 123445555667777777666543
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=97.20 E-value=0.0013 Score=70.88 Aligned_cols=74 Identities=20% Similarity=0.403 Sum_probs=41.8
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~ 209 (604)
.++.||||||..... +.....+..+ ...+ .++.++||+++ .. .+++...++ ..+-+|+||.|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~evllVlda-~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEILLVVDA-MT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeEEEEEec-cc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 379999999976531 1122222222 2222 56777776654 32 233433333 455689999998
Q ss_pred CCCCCCHHHHH
Q 007422 210 MDKGTDAADIL 220 (604)
Q Consensus 210 ~~~~~~~~~~l 220 (604)
...+..+..+.
T Consensus 253 ~~rgG~alsi~ 263 (433)
T PRK10867 253 DARGGAALSIR 263 (433)
T ss_pred cccccHHHHHH
Confidence 76665555543
No 369
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.19 E-value=0.0022 Score=69.44 Aligned_cols=73 Identities=18% Similarity=0.330 Sum_probs=42.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~ 210 (604)
+++||||||..... ....+.+..+ ..+-.+|.+++|+++.. . +++...++ ...-+|+||.|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l--~~~~~pdevlLVvda~~-g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEI--KEAVKPDEVLLVIDATI-G---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHH--HHHhcccceeEEEeccc-c---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 78999999986541 1122222222 22336787877766433 2 23333333 3455799999988
Q ss_pred CCCCCHHHHH
Q 007422 211 DKGTDAADIL 220 (604)
Q Consensus 211 ~~~~~~~~~l 220 (604)
..+..+..+.
T Consensus 246 a~~G~~ls~~ 255 (437)
T PRK00771 246 AKGGGALSAV 255 (437)
T ss_pred CcccHHHHHH
Confidence 7776666554
No 370
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.00065 Score=74.00 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|++||.+|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 36889999999999999999985
No 371
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0036 Score=63.59 Aligned_cols=87 Identities=24% Similarity=0.422 Sum_probs=50.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCeEEEEEecCCCcchhh--HHHHhhh---cceeEEEecc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLATS--DAIKISR---ERTFGVLTKI 207 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~---~d~iIl~v~~a~~d~~~~--~~l~l~~---~r~i~VltK~ 207 (604)
.+++|||.||..+ +++..|.. -|..++++ +......++ +.|-+.. .+.++|+||+
T Consensus 70 lq~tlvDCPGHas----------------LIRtiiggaqiiDlm~lvi-Dv~kG~QtQtAEcLiig~~~c~klvvvinki 132 (522)
T KOG0461|consen 70 LQFTLVDCPGHAS----------------LIRTIIGGAQIIDLMILVI-DVQKGKQTQTAECLIIGELLCKKLVVVINKI 132 (522)
T ss_pred ceeEEEeCCCcHH----------------HHHHHHhhhheeeeeeEEE-ehhcccccccchhhhhhhhhccceEEEEecc
Confidence 4689999999743 34444443 46666655 333344333 3343333 8899999999
Q ss_pred cCCCCCCCHH----------HHHhCCccccCCCEEEEEeCCh
Q 007422 208 DLMDKGTDAA----------DILEGKSYRLKFPWIGVVNRSQ 239 (604)
Q Consensus 208 D~~~~~~~~~----------~~l~~~~~~l~~g~~~v~~~s~ 239 (604)
|..+++.... +-+++-...-..+.+.|++..+
T Consensus 133 d~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 133 DVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 9998754321 1112222222345777877766
No 372
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.15 E-value=0.34 Score=56.36 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.2
Q ss_pred EcCCCCCHHHHHhhhhCCCCCccc
Q 007422 40 VGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 40 vG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
+|.||+|||||||+|.|..| ++-
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-ccc
Confidence 49999999999999999986 443
No 373
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.10 E-value=0.00069 Score=64.60 Aligned_cols=147 Identities=19% Similarity=0.261 Sum_probs=82.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-.++|||+-.+|||+||-+.+-.. +|... .||+..
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVFd--------------------------------------- 39 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVFD--------------------------------------- 39 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEEc---------------------------------------
Confidence 468999999999999999888664 35543 343331
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch--hhH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSD 191 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~--~~~ 191 (604)
+....+.+.......|.||||.|-.+.. .++-+ ...++|.+++|.+-.+.. +. ...
T Consensus 40 --------nys~~v~V~dg~~v~L~LwDTAGqedYD----------rlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 40 --------NYSANVTVDDGKPVELGLWDTAGQEDYD----------RLRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred --------cceEEEEecCCCEEEEeeeecCCCcccc----------ccccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 0001122211112258899999976641 12322 456789888876433221 11 223
Q ss_pred HHHhhh-----cceeEEEecccCCCCCCCHHHHH----------hCCcc--ccC-CCEEEEEeCChhhhhcccc
Q 007422 192 AIKISR-----ERTFGVLTKIDLMDKGTDAADIL----------EGKSY--RLK-FPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 192 ~l~l~~-----~r~i~VltK~D~~~~~~~~~~~l----------~~~~~--~l~-~g~~~v~~~s~~~i~~~~~ 247 (604)
++...+ .|+|+|.||.|+.+.......+. +|... .++ .+|+..++.+++++.+.+.
T Consensus 99 W~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 99 WIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred hhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHH
Confidence 333222 89999999999985321111111 11111 122 4577777777776554443
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.09 E-value=0.00039 Score=67.90 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.--++.+||-||+||||++.-|+|..- |+.+.
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s-~vasy 89 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFS-EVAAY 89 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCC-ccccc
Confidence 445788999999999999999999853 44433
No 375
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.99 E-value=0.0013 Score=69.21 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCC----CcceeeeccCCCCccCChHHHHHHHHH
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG----SREYAEFLHIPRKRFTDFAAVRKEIQD 109 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (604)
-.-|++||++|+||||.|--|..+.++-.+. -+..+ |.+-...=+ -+.|++.+..|-....+..+...++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~---~kVai-ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK---KKVAI-ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC---cceEE-EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 4568899999999999999887653311110 01110 000000000 123444455554444555555444332
Q ss_pred hhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCCcch
Q 007422 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQDLA 188 (604)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~-d~iIl~v~~a~~d~~ 188 (604)
. ...+++||||-|..... ...+.++ ..|+... +.-.+.|.+++....
T Consensus 279 l-----------------------~~~d~ILVDTaGrs~~D--------~~~i~el-~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 279 L-----------------------RDCDVILVDTAGRSQYD--------KEKIEEL-KELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred h-----------------------hcCCEEEEeCCCCCccC--------HHHHHHH-HHHHhccccceEEEEEecCcchH
Confidence 1 12389999999986542 2233333 4455443 333344555554332
Q ss_pred -hhHHHHhhh--cceeEEEecccCCCCCCCHHHHHh
Q 007422 189 -TSDAIKISR--ERTFGVLTKIDLMDKGTDAADILE 221 (604)
Q Consensus 189 -~~~~l~l~~--~r~i~VltK~D~~~~~~~~~~~l~ 221 (604)
..+.+...+ .-.=+++||.|....-.+...++.
T Consensus 327 dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 327 DLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred HHHHHHHHhccCCcceeEEEcccccCchhHHHHHHH
Confidence 223333333 444568999998766555666553
No 376
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0016 Score=66.52 Aligned_cols=174 Identities=17% Similarity=0.224 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC-CcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
.+-+.+-+|+.--||||||-.|+--.- ++.+.-. + . ....-.+.....-.|++-+..-++.+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla-~----------l-----~~dS~~~~t~g~~~D~ALLvDGL~AE- 67 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLA-S----------L-----ERDSKRKGTQGEKIDLALLVDGLEAE- 67 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHH-H----------H-----hcccccccCCCCccchhhhhhhhHHH-
Confidence 466899999999999999999975321 1111100 0 0 00000011122334565555544433
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
+..| ++-++- ...++.....+.+.||||.... .++|+.. ..-+|+.|++|+ +...+-.|.
T Consensus 68 -REQG----ITIDVA-YRyFsT~KRkFIiADTPGHeQY------------TRNMaTG-ASTadlAIlLVD-AR~Gvl~QT 127 (431)
T COG2895 68 -REQG----ITIDVA-YRYFSTEKRKFIIADTPGHEQY------------TRNMATG-ASTADLAILLVD-ARKGVLEQT 127 (431)
T ss_pred -HhcC----ceEEEE-eeecccccceEEEecCCcHHHH------------hhhhhcc-cccccEEEEEEe-cchhhHHHh
Confidence 2223 222211 1234444558999999997442 3555433 356788877764 444433332
Q ss_pred -----HHHhhh-cceeEEEecccCCCCCCCHHHHHhC----CccccC---CCEEEEEeCChhhhh
Q 007422 192 -----AIKISR-ERTFGVLTKIDLMDKGTDAADILEG----KSYRLK---FPWIGVVNRSQADIN 243 (604)
Q Consensus 192 -----~l~l~~-~r~i~VltK~D~~~~~~~~~~~l~~----~~~~l~---~g~~~v~~~s~~~i~ 243 (604)
...+.. +.+++.+||+|+++-.++.-+-+.. ....++ .-|+++++.-++++.
T Consensus 128 rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 128 RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 233344 6778889999999876543211110 011122 147777777776653
No 377
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.84 E-value=0.0029 Score=68.29 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=42.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~ 209 (604)
.++.||||||..... ......+..+.. .-.++.++||+.+. .. +++...++ ..+=+|+||.|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~~--~~~p~e~lLVvda~-tg---q~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIKE--ILNPDEILLVVDAM-TG---QDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHHH--hhCCceEEEEEecc-ch---HHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 379999999975531 112333333322 33577777777643 22 33333332 445678999997
Q ss_pred CCCCCCHHHHH
Q 007422 210 MDKGTDAADIL 220 (604)
Q Consensus 210 ~~~~~~~~~~l 220 (604)
...+..+..+.
T Consensus 252 ~~~~G~~lsi~ 262 (428)
T TIGR00959 252 DARGGAALSVR 262 (428)
T ss_pred cccccHHHHHH
Confidence 66665555544
No 378
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.044 Score=58.11 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHH-HHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEeccc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMV-RSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~-~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D 208 (604)
.++.||||.|-... ..+.+.++. -.-+-+||-++||+++... |++...|+ .=+=+|+||.|
T Consensus 183 ~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~G----QdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMIG----QDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEecccc----hHHHHHHHHHhhhcCCceEEEEccc
Confidence 37999999997664 223333332 1344578888888866432 23333333 55667899999
Q ss_pred CCCCCCCHHHH
Q 007422 209 LMDKGTDAADI 219 (604)
Q Consensus 209 ~~~~~~~~~~~ 219 (604)
--.++..++.+
T Consensus 251 GdaRGGaALS~ 261 (451)
T COG0541 251 GDARGGAALSA 261 (451)
T ss_pred CCCcchHHHhh
Confidence 88777655544
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=96.64 E-value=0.0028 Score=67.14 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.++++|.+|+|||||+|+|+|..-
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 380
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.54 E-value=0.0036 Score=64.11 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
--+++|||..-+||||||--|+...
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecc
Confidence 3489999999999999999888765
No 381
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.48 E-value=0.015 Score=55.80 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH--HhhhcceeEEEecccCCCCCCCHH---HHH---hCCcccc-CCCE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAI--KISRERTFGVLTKIDLMDKGTDAA---DIL---EGKSYRL-KFPW 231 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l--~l~~~r~i~VltK~D~~~~~~~~~---~~l---~~~~~~l-~~g~ 231 (604)
.++.++..|++++|+|+++++..+.+......+ .....++++|+||+|+.++..... ... ....... ...+
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDV 102 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccE
Confidence 368889999999999999887654332211222 222389999999999986543221 111 0001111 1247
Q ss_pred EEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHH
Q 007422 232 IGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSK 283 (604)
Q Consensus 232 ~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~ 283 (604)
+.+++.++.+++++...+....+ .....+---.+..|-..|...|..
T Consensus 103 ~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 103 ILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcCCCCCHHHHHHHHHH
Confidence 88999999998887766654432 111101000135677776665543
No 382
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.33 E-value=0.018 Score=59.94 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 383
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.09 E-value=0.015 Score=55.47 Aligned_cols=21 Identities=38% Similarity=0.407 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.+.|+|+-||||||.-+++..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 467999999999999999963
No 384
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.06 E-value=0.0046 Score=66.35 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 10 KIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
-|+.....+|.. ++..+.-.|+|+|+||+|||||||.|.|..|
T Consensus 20 ~l~~F~q~vgl~-------d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 20 GLDYFQQCVGLR-------DCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred hHHHHHHHhccc-------ccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 355555566642 2334667899999999999999999999987
No 385
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.03 Score=61.41 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.+++||..|+|||||++.|+|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 6999999999999999999994 564544
No 386
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.026 Score=57.59 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
+.-.|.|+|.||+|||||++.|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 55678999999999999999999864
No 387
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.98 E-value=0.0078 Score=62.27 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
--|.+||-||+||||+||+|-..++
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhccc
Confidence 3577899999999999999988765
No 388
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0041 Score=64.41 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.+..|.|+..-.+||+|.-+.|+-..=.-++.| + -+.+..++||-.+.++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g------------~------------vddgdtvtdfla~ere------ 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG------------D------------VDDGDTVTDFLAIERE------ 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhccc------------c------------cCCCchHHHHHHHHHh------
Confidence 455789999999999999999874321001111 0 1234456666665442
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec-CCCcchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP-ANQDLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~-a~~d~~~~~ 191 (604)
++..+....+.+.|.+ ..+.+|||||..++... +.+.++--|.++.|++. +.....+..
T Consensus 86 ----rgitiqsaav~fdwkg---~rinlidtpghvdf~le-------------verclrvldgavav~dasagve~qtlt 145 (753)
T KOG0464|consen 86 ----RGITIQSAAVNFDWKG---HRINLIDTPGHVDFRLE-------------VERCLRVLDGAVAVFDASAGVEAQTLT 145 (753)
T ss_pred ----cCceeeeeeeeccccc---ceEeeecCCCcceEEEE-------------HHHHHHHhcCeEEEEeccCCcccceee
Confidence 2222333333333433 36899999999887543 34555556767555543 233333333
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.++.+. .|-++.+||+|....
T Consensus 146 vwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 146 VWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eehhccccCCchhhhhhhhhhhhh
Confidence 444443 888999999998754
No 389
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.015 Score=60.37 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH---HHHhhhcceeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISRERTFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~---~l~l~~~r~i~VltK~D~~~~ 212 (604)
.+++||||.|-... ..++-+.+.+. ...+ +||.||+|+++ +..-+... +++..-.-.-+++||.|--.+
T Consensus 184 fdvIIvDTSGRh~q-----e~sLfeEM~~v-~~ai-~Pd~vi~VmDa-siGQaae~Qa~aFk~~vdvg~vIlTKlDGhak 255 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQ-----EASLFEEMKQV-SKAI-KPDEIIFVMDA-SIGQAAEAQARAFKETVDVGAVILTKLDGHAK 255 (483)
T ss_pred CcEEEEeCCCchhh-----hHHHHHHHHHH-Hhhc-CCCeEEEEEec-cccHhHHHHHHHHHHhhccceEEEEecccCCC
Confidence 48999999997653 22232222222 2333 58888887654 43322221 122111556678999998877
Q ss_pred CCCHHHH
Q 007422 213 GTDAADI 219 (604)
Q Consensus 213 ~~~~~~~ 219 (604)
+..++..
T Consensus 256 GGgAlSa 262 (483)
T KOG0780|consen 256 GGGALSA 262 (483)
T ss_pred CCceeee
Confidence 7654443
No 390
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.014 Score=65.14 Aligned_cols=124 Identities=21% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..-.|++|...--|||||..+|+-..- -+..|.+-.+++-...+ ++. +.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld~re-------------------deq-------~r 56 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLDTRE-------------------DEQ-------TR 56 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeeccccc-------------------hhh-------hh
Confidence 456799999999999999999975431 24455554554322111 000 11
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~ 190 (604)
.++-+..++|. +. ...-+.|||+||..++. ..+.+..+-+|..++.| ++..... +.
T Consensus 57 gitmkss~is~------~~--~~~~~nlidspghvdf~-------------sevssas~l~d~alvlv-dvvegv~~qt~ 114 (887)
T KOG0467|consen 57 GITMKSSAISL------LH--KDYLINLIDSPGHVDFS-------------SEVSSASRLSDGALVLV-DVVEGVCSQTY 114 (887)
T ss_pred ceeeecccccc------cc--CceEEEEecCCCccchh-------------hhhhhhhhhcCCcEEEE-eeccccchhHH
Confidence 12222223331 00 12247899999998874 33455556677665544 4444433 23
Q ss_pred HHHH--hhh-cceeEEEecccC
Q 007422 191 DAIK--ISR-ERTFGVLTKIDL 209 (604)
Q Consensus 191 ~~l~--l~~-~r~i~VltK~D~ 209 (604)
..++ +.. .+.++|+||+|.
T Consensus 115 ~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 115 AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHccCceEEEEehhhh
Confidence 3344 222 789999999994
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.84 E-value=0.0071 Score=56.57 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~ 64 (604)
-+++|+|+.|||||||+|-+.|-.. |.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 3689999999999999999999863 6653
No 392
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.74 E-value=0.0081 Score=58.83 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP 61 (604)
.++|+|+.|||||||||.|.|.+- |
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~-p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK-P 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC-C
Confidence 689999999999999999999874 6
No 393
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.67 E-value=0.015 Score=60.10 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=41.0
Q ss_pred ceEeeCCCCccccCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCCcch--hhHHHHhhh---cceeEEEecccCCC
Q 007422 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDLA--TSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 138 l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i-~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
+.||||-|.... ++..++..+ ++.|..+|+| +|+.... +.+-+..+- -|+|+|+||+|+.+
T Consensus 203 VsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvV-aAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 203 VSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVV-AADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred EEEEecCCccHH------------HHHHHHHHhccccceEEEEE-EccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc
Confidence 689999997542 244444444 3578887755 5555433 333333332 99999999999987
Q ss_pred CC
Q 007422 212 KG 213 (604)
Q Consensus 212 ~~ 213 (604)
..
T Consensus 270 dd 271 (527)
T COG5258 270 DD 271 (527)
T ss_pred HH
Confidence 64
No 394
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.63 E-value=0.03 Score=51.71 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCcch-hhHHHHh---hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeC
Q 007422 162 IENMVRSYIEKPNCIILAISPANQDLA-TSDAIKI---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR 237 (604)
Q Consensus 162 i~~~~~~~i~~~d~iIl~v~~a~~d~~-~~~~l~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 237 (604)
++++.+.+++++|.++++++..+.... ....... ...|.++|+||+|+.++.. ...... ........++.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~-~~~~~~~~~~~iSa~ 79 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEV-LEKWKS-IKESEGIPVVYVSAK 79 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHH-HHHHHH-HHHhCCCcEEEEEcc
Confidence 367788888999999888765432221 1122222 2389999999999864321 111100 001123457888998
Q ss_pred ChhhhhccccHHHHHHH
Q 007422 238 SQADINKNVDMIAARRR 254 (604)
Q Consensus 238 s~~~i~~~~~~~~~~~~ 254 (604)
++.+++++...+....+
T Consensus 80 ~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 80 ERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 88888877766655443
No 395
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.58 E-value=0.012 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+..+|.|+.+|||||++.|+.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999863
No 396
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.46 E-value=0.013 Score=53.16 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
|+|+|++|||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 397
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.032 Score=56.97 Aligned_cols=126 Identities=18% Similarity=0.366 Sum_probs=78.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
.|.-||..--||+||--||+.. |... ...++..++++.+.-++
T Consensus 56 NVGTIGHVDHGKTTLTaAITki--la~~-----------------------------g~A~~~kydeID~APEE------ 98 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKI--LAEK-----------------------------GGAKFKKYDEIDKAPEE------ 98 (449)
T ss_pred cccccccccCCchhHHHHHHHH--HHhc-----------------------------cccccccHhhhhcChhh------
Confidence 4667899999999999999864 2111 12334445555433221
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHH
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIK 194 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~ 194 (604)
+..+++-+.-.++...... +..=+|.||..+ .+++|+... .+-|..||||.+.+... .+.+-+-
T Consensus 99 -kaRGITIn~aHveYeTa~R-hYaH~DCPGHAD------------YIKNMItGa-aqMDGaILVVaatDG~MPQTrEHlL 163 (449)
T KOG0460|consen 99 -KARGITINAAHVEYETAKR-HYAHTDCPGHAD------------YIKNMITGA-AQMDGAILVVAATDGPMPQTREHLL 163 (449)
T ss_pred -hhccceEeeeeeeeecccc-ccccCCCCchHH------------HHHHhhcCc-cccCceEEEEEcCCCCCcchHHHHH
Confidence 2334444445555555543 678899999754 456665443 34566777775554433 3456667
Q ss_pred hhh----cceeEEEecccCCCCC
Q 007422 195 ISR----ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 195 l~~----~r~i~VltK~D~~~~~ 213 (604)
+|+ .++++.+||.|.++..
T Consensus 164 LArQVGV~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 164 LARQVGVKHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHcCCceEEEEEecccccCCH
Confidence 777 8888999999999654
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.37 E-value=0.012 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|..|+|||||+++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68899999999999999999974
No 399
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.33 E-value=0.013 Score=56.38 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
-.|.|+|..|||||||+|+|.|. +.|.+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 36899999999999999999997 34444
No 400
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.22 E-value=0.014 Score=55.81 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
-.++|+|++||||||++++|+|. +|.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~--i~~~~~ 54 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF--IPPDER 54 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--cCCCCC
Confidence 36899999999999999999985 354433
No 401
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.11 E-value=0.011 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999854
No 402
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.016 Score=57.20 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
.|++||+.|+|||||+|.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 689999999999999999999753 443
No 403
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.018 Score=53.45 Aligned_cols=29 Identities=34% Similarity=0.702 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
.+.+||..+||||||+++|++. ++.+.|.
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~ 62 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGT 62 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCe
Confidence 5789999999999999999997 3444443
No 404
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.06 E-value=0.06 Score=52.33 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHhhhhC
Q 007422 37 IAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G 56 (604)
-+|||+|||||||.-+.+..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47999999999998887753
No 405
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.03 E-value=0.017 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.759 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
|.|+|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 406
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.00 E-value=0.022 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 407
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.98 E-value=0.021 Score=55.65 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|+|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSG 56 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 57899999999999999999963 44444
No 408
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.018 Score=54.26 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=28.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p 71 (604)
-+++.|+.|+|||||+.+|+...-+--+...+||-|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 477889999999999999997653444455678877
No 409
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.95 E-value=0.17 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.|..+|-|-=|||||||||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 3778888999999999999999754
No 410
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.021 Score=56.74 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 411
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.94 E-value=0.023 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999999963
No 412
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.021 Score=55.62 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
..++++|+.|||||||++.|.|. +|..+|
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 38899999999999999999996 344444
No 413
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.87 E-value=0.022 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|||||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478899999999999999999963
No 414
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.86 E-value=0.022 Score=55.19 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=26.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC-CCccccccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~-~lP~~~~~~Tr~p 71 (604)
.|+|+|.+|||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 68999999999999999999852 0122233466666
No 415
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.85 E-value=0.15 Score=52.65 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEE
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLH 77 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~ 77 (604)
..|+++|||+.++|||||...|+...+ ---|.|+.+.|-
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LD 140 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELD 140 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcC
Confidence 689999999999999999999986532 114666666654
No 416
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.84 E-value=0.023 Score=55.65 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||+++|.|. +|...|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCce
Confidence 6889999999999999999996 344444
No 417
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.78 E-value=0.021 Score=54.34 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh---CCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV---GKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~---G~~ 58 (604)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56899999999999999999998 654
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.77 E-value=0.026 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 419
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.74 E-value=0.026 Score=54.99 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|..||||||++++|+|. .|..+|
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl--~~~~~G 58 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL--VRPRSG 58 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCe
Confidence 5789999999999999999996 354444
No 420
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.72 E-value=0.36 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|-.+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5688999999999999999999853
No 421
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.71 E-value=0.027 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 422
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.71 E-value=0.027 Score=54.69 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|.. |..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 55 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI--KESSG 55 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 68899999999999999999963 43444
No 423
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.68 E-value=0.027 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.++++|+.|||||||++.|.|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999996
No 424
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.67 E-value=0.026 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 425
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.67 E-value=0.028 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999963
No 426
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.66 E-value=0.029 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
No 427
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.028 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 428
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.028 Score=55.23 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999996
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.64 E-value=0.029 Score=54.80 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 430
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.62 E-value=0.029 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 431
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.029 Score=55.57 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|. +|...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL--ERPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6889999999999999999996 344444
No 432
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.61 E-value=0.027 Score=55.91 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||++.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999996
No 433
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.033 Score=57.07 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|..|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999864
No 434
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.59 E-value=0.029 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|. +|...|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G 56 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE--ELPTSG 56 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCce
Confidence 5789999999999999999996 344444
No 435
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.031 Score=53.01 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||+++|.|. +|...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G 55 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL--EEPDSG 55 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCce
Confidence 6789999999999999999996 344444
No 436
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.58 E-value=0.035 Score=53.18 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC-CCccccccccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~-~lP~~~~~~Tr~p 71 (604)
.-|+++|++|||||||++.|+... -+......+||.|
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 358889999999999999998752 0112223456655
No 437
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.03 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.55 E-value=0.03 Score=56.04 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.||||||||.+|.|. ++-..|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 4789999999999999999995 454444
No 439
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.54 E-value=0.03 Score=58.10 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
.++++|+.|||||||++.|.|. +|...|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 6899999999999999999996 3444453
No 440
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.53 E-value=0.031 Score=54.74 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|..|||||||++.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999996
No 441
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.50 E-value=0.033 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|+|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999963
No 442
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.49 E-value=0.033 Score=54.31 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|+|. +|...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL--EEPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6889999999999999999996 344444
No 443
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.031 Score=55.67 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~T 68 (604)
.++|||+.|||||||+.+|+|. ++-..|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 5889999999999999999994 444445443
No 444
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.48 E-value=0.033 Score=56.20 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=24.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~ 67 (604)
.++|+|..|||||||++.|.|. ++-..|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK--LKPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 6899999999999999999997 44445543
No 445
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.48 E-value=0.032 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||+++|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 446
>PRK13695 putative NTPase; Provisional
Probab=94.48 E-value=0.3 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 447
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.47 E-value=0.034 Score=53.85 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
-.++++|..|+|||||++.|.|.. |..+|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 368899999999999999999963 44444
No 448
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.46 E-value=0.034 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
.++|+|+.|||||||+.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6789999999999999999997 44554
No 449
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.46 E-value=0.033 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
.++|+|..|+|||||+++|+|.. |..+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 68899999999999999999963 444453
No 450
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.43 E-value=0.033 Score=54.53 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~ 67 (604)
.++++|+.|||||||++.|+|.. |-.+|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 57899999999999999999973 4444543
No 451
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.42 E-value=0.035 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999963
No 452
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.034 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999963
No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.034 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 454
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.40 E-value=0.075 Score=54.26 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhh-hcceeEEEecccCCCCCC--CHHHHHhCCccccCCCEEEEEeCC
Q 007422 163 ENMVRSYIEKPNCIILAISPANQ-DLATSDAIKIS-RERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNRS 238 (604)
Q Consensus 163 ~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~-~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s 238 (604)
...+...++.+|+|++|+++... ...+....+.. ..+.|+|+||+|+.++.. .+.+.+.. .+...+.+++.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~----~~~~vi~iSa~~ 87 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEE----KGIKALAINAKK 87 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHH----cCCeEEEEECCC
Confidence 34457788999999887754321 11222333333 388999999999975421 12222211 122456777777
Q ss_pred hhhhhccccHHHHHH
Q 007422 239 QADINKNVDMIAARR 253 (604)
Q Consensus 239 ~~~i~~~~~~~~~~~ 253 (604)
+.+++.+...+....
T Consensus 88 ~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 88 GKGVKKIIKAAKKLL 102 (276)
T ss_pred cccHHHHHHHHHHHH
Confidence 766666555544433
No 455
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.39 E-value=0.024 Score=56.81 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcch---hhHHHHhhh---cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLA---TSDAIKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~---~~~~l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
....+.+.|++++|.+++|++..+.+.. ...++..+. .+.++|+||+|+.++.....+.... ....+..++.+
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~v~~~ 103 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQVLMT 103 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCeEEEE
Confidence 3356667799999999888765433322 123333332 8899999999997543211111111 11234557889
Q ss_pred EeCChhhhhccccHH
Q 007422 235 VNRSQADINKNVDMI 249 (604)
Q Consensus 235 ~~~s~~~i~~~~~~~ 249 (604)
++.++.++++++..+
T Consensus 104 SAktg~gi~eLf~~l 118 (245)
T TIGR00157 104 SSKNQDGLKELIEAL 118 (245)
T ss_pred ecCCchhHHHHHhhh
Confidence 999888887766543
No 456
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.38 E-value=0.038 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999974
No 457
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.38 E-value=0.034 Score=55.18 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|. +|..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCc
Confidence 6889999999999999999996 344444
No 458
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.38 E-value=0.035 Score=54.34 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|+|||||++.|.|. +|...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~--~~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL--LHVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--CCCCCe
Confidence 6889999999999999999996 344445
No 459
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.38 E-value=0.033 Score=54.14 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||++.|.|. +|..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL--IKPDSG 55 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCce
Confidence 5789999999999999999996 344444
No 460
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.036 Score=54.78 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|+|||||+++|.|.. |-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKG 58 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 57899999999999999999973 44444
No 461
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.32 E-value=0.032 Score=58.61 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~T 68 (604)
-..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 356999999999999999999985 465544433
No 462
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.31 E-value=0.078 Score=49.06 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHhhcCCCeEEEEEecCCCcch-hhHHHHhh---h--cceeEEEecccCCCCC
Q 007422 167 RSYIEKPNCIILAISPANQDLA-TSDAIKIS---R--ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 167 ~~~i~~~d~iIl~v~~a~~d~~-~~~~l~l~---~--~r~i~VltK~D~~~~~ 213 (604)
.+.++++|.|+++++....... .....+.. . .|.|+|+||+|+.++.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHH
Confidence 4567899999887765432111 22222222 2 7899999999998643
No 463
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.28 E-value=0.038 Score=54.45 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|.. |..+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 60 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL--KPTSG 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999963 44444
No 464
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.28 E-value=0.037 Score=55.06 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|..|||||||+++|.|.. |..+|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 58 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSG 58 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCC
Confidence 67899999999999999999973 44444
No 465
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.27 E-value=0.039 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68899999999999999999963
No 466
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.27 E-value=0.039 Score=55.11 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
.++++|+.|||||||++.|+|. +|-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~ 59 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGS 59 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcE
Confidence 6889999999999999999996 3444453
No 467
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.26 E-value=0.039 Score=54.14 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.25 E-value=0.04 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|..|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999963
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.22 E-value=0.04 Score=54.95 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 470
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.039 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++|+|+.|||||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999973
No 471
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.21 E-value=0.041 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 472
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.21 E-value=0.043 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|..|||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999996
No 473
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.21 E-value=0.041 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999996
No 474
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.19 E-value=0.014 Score=57.26 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+++||+.|||||||+|.|+|.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred EEEEECCCCCCceeeeeeeccc
Confidence 5789999999999999999996
No 475
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.19 E-value=0.037 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 476
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.043 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 477
>PRK10908 cell division protein FtsE; Provisional
Probab=94.19 E-value=0.041 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
-.++++|+.|||||||++.|.|.. |..+|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 367899999999999999999963 44444
No 478
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.18 E-value=0.07 Score=48.41 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh-hHHHHhhh-----cceeEEEecccC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISR-----ERTFGVLTKIDL 209 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~-~~~l~l~~-----~r~i~VltK~D~ 209 (604)
.+++++|||+... ......+..+|.+++++.+...++.. ...++... .+..+|+|+++.
T Consensus 45 yd~VIiD~p~~~~---------------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS---------------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 4889999998532 12246688899998877665544332 22232221 677899999874
Q ss_pred C
Q 007422 210 M 210 (604)
Q Consensus 210 ~ 210 (604)
-
T Consensus 110 ~ 110 (139)
T cd02038 110 P 110 (139)
T ss_pred H
Confidence 3
No 479
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.04 Score=54.66 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||++.|.|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 67899999999999999999963 44444
No 480
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.042 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++|+|+.|||||||++.|.|..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999973
No 481
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.042 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|+.|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 482
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.13 E-value=0.042 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999973
No 483
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.13 E-value=0.04 Score=54.41 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68899999999999999999963
No 484
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.10 E-value=0.044 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68899999999999999999963
No 485
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.045 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|||||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999963
No 486
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.045 Score=53.37 Aligned_cols=28 Identities=43% Similarity=0.602 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|+|.. |...|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~--~~~~G 53 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE--TPQSG 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999973 44444
No 487
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.09 E-value=0.043 Score=43.27 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
|++.|.+||||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 488
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.08 E-value=0.049 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+--|.|+|.+.+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 446889999999999999999984
No 489
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.043 Score=56.41 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|. +|..+|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl--~~p~~G 62 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNAL--LKPSSG 62 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCc
Confidence 5789999999999999999996 344445
No 490
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.08 E-value=0.044 Score=55.07 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|+|.. |..+|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL--APDHG 58 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999963 44444
No 491
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.044 Score=55.74 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999996
No 492
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.06 E-value=0.044 Score=55.63 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|||||||++.|.|. +|..+|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G 68 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGM--IEPTSG 68 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--CCCCCC
Confidence 6889999999999999999996 344444
No 493
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.048 Score=50.43 Aligned_cols=30 Identities=40% Similarity=0.519 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
..++++|+.|+|||||+++|.|.- |...|.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~ 55 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGE 55 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccE
Confidence 478899999999999999999963 444443
No 494
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.05 E-value=0.046 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.05 E-value=0.043 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.+++||+.||||||||.+|.|.+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 578899999999999999999763
No 496
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.048 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|+|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999963
No 497
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.04 E-value=0.049 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.672 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|+|||||++.|.|.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 498
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.23 Score=59.65 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
..+|=-+|||.+|+||||++..- |.+|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~s-gl~F 149 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNS-GLQF 149 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcc-cccC
Confidence 58999999999999999998764 5554
No 499
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.045 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999973
No 500
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.047 Score=54.53 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++++|+.|+|||||++.|.|. +|...|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G 56 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL--IEPTSG 56 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCc
Confidence 5789999999999999999996 344444
Done!