Query 007422
Match_columns 604
No_of_seqs 435 out of 2902
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 01:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 6.1E-92 2.1E-96 791.2 61.7 587 1-603 26-768 (772)
2 3szr_A Interferon-induced GTP- 100.0 8.5E-83 2.9E-87 714.9 55.3 559 11-601 30-607 (608)
3 3t34_A Dynamin-related protein 100.0 4.2E-50 1.4E-54 424.3 31.1 325 1-325 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.1E-44 3.7E-49 381.7 38.1 332 1-343 6-345 (353)
5 3ljb_A Interferon-induced GTP- 100.0 2.5E-39 8.5E-44 321.2 22.6 251 322-576 3-271 (271)
6 1jwy_B Dynamin A GTPase domain 100.0 3.3E-38 1.1E-42 326.8 29.9 304 2-314 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 100.0 9.7E-36 3.3E-40 305.8 34.7 292 1-303 1-298 (299)
8 2j69_A Bacterial dynamin-like 99.8 2.2E-17 7.5E-22 187.5 21.8 166 33-212 68-245 (695)
9 3iev_A GTP-binding protein ERA 99.7 8.7E-18 3E-22 173.0 10.4 237 33-330 9-256 (308)
10 1wf3_A GTP-binding protein; GT 99.7 6.5E-18 2.2E-22 173.1 7.4 233 33-330 6-246 (301)
11 1ega_A Protein (GTP-binding pr 99.6 8.3E-17 2.8E-21 165.1 -0.2 233 33-330 7-247 (301)
12 3lxx_A GTPase IMAP family memb 99.5 5.7E-14 1.9E-18 138.9 12.9 124 33-213 28-161 (239)
13 4dhe_A Probable GTP-binding pr 99.5 2.6E-14 8.9E-19 139.1 10.1 165 32-253 27-209 (223)
14 2xtp_A GTPase IMAP family memb 99.5 2.9E-14 9.8E-19 142.8 10.6 166 33-257 21-210 (260)
15 2qpt_A EH domain-containing pr 99.5 5.1E-14 1.7E-18 155.6 12.9 161 32-212 63-233 (550)
16 3iby_A Ferrous iron transport 99.5 1.1E-14 3.8E-19 145.6 6.8 153 35-251 2-163 (256)
17 3lxw_A GTPase IMAP family memb 99.5 1.1E-13 3.8E-18 137.6 13.7 165 33-255 20-208 (247)
18 1svi_A GTP-binding protein YSX 99.5 1.2E-13 4.1E-18 131.3 11.5 157 33-250 22-190 (195)
19 1kao_A RAP2A; GTP-binding prot 99.5 1E-13 3.5E-18 127.6 10.2 103 137-252 52-163 (167)
20 2dyk_A GTP-binding protein; GT 99.5 9.1E-14 3.1E-18 127.5 9.8 150 34-249 1-156 (161)
21 3q72_A GTP-binding protein RAD 99.5 7.1E-14 2.4E-18 129.1 8.6 153 34-254 2-163 (166)
22 2qu8_A Putative nucleolar GTP- 99.5 1.9E-13 6.4E-18 134.0 11.6 168 25-251 20-201 (228)
23 1xzp_A Probable tRNA modificat 99.5 1E-13 3.6E-18 150.3 10.5 157 35-254 244-404 (482)
24 3tkl_A RAS-related protein RAB 99.5 1.1E-13 3.9E-18 131.4 9.4 157 33-255 15-179 (196)
25 2a9k_A RAS-related protein RAL 99.5 1.6E-13 5.5E-18 129.0 10.2 156 33-256 17-182 (187)
26 3pqc_A Probable GTP-binding pr 99.5 3.5E-13 1.2E-17 127.7 12.3 160 32-252 21-191 (195)
27 1u8z_A RAS-related protein RAL 99.5 1.1E-13 3.9E-18 127.4 8.6 150 34-251 4-163 (168)
28 3tw8_B RAS-related protein RAB 99.4 4.9E-14 1.7E-18 131.9 5.9 154 33-252 8-168 (181)
29 1z0f_A RAB14, member RAS oncog 99.4 6.7E-14 2.3E-18 130.7 6.7 152 33-250 14-173 (179)
30 2fg5_A RAB-22B, RAS-related pr 99.4 3.3E-14 1.1E-18 135.3 4.6 155 32-252 21-183 (192)
31 1z08_A RAS-related protein RAB 99.4 9.8E-14 3.4E-18 128.5 7.6 152 33-251 5-165 (170)
32 2bov_A RAla, RAS-related prote 99.4 2.2E-13 7.6E-18 130.5 10.2 155 33-255 13-177 (206)
33 3bc1_A RAS-related protein RAB 99.4 1.8E-13 6.3E-18 129.4 9.5 104 137-253 71-183 (195)
34 3clv_A RAB5 protein, putative; 99.4 3E-13 1E-17 128.9 10.9 101 137-252 94-201 (208)
35 1zbd_A Rabphilin-3A; G protein 99.4 1.6E-13 5.4E-18 131.5 8.9 155 33-253 7-169 (203)
36 3gee_A MNME, tRNA modification 99.4 4E-14 1.4E-18 153.5 5.2 157 34-252 233-395 (476)
37 2g6b_A RAS-related protein RAB 99.4 1.4E-13 4.8E-18 128.8 8.1 154 33-251 9-170 (180)
38 2il1_A RAB12; G-protein, GDP, 99.4 1E-13 3.6E-18 131.9 7.3 154 32-251 24-186 (192)
39 3i8s_A Ferrous iron transport 99.4 8.3E-14 2.8E-18 140.7 6.8 153 34-250 3-164 (274)
40 1z0j_A RAB-22, RAS-related pro 99.4 9.1E-14 3.1E-18 128.6 6.5 151 34-250 6-164 (170)
41 1z2a_A RAS-related protein RAB 99.4 5.5E-14 1.9E-18 129.8 5.0 152 33-250 4-162 (168)
42 2oil_A CATX-8, RAS-related pro 99.4 1.1E-13 3.6E-18 131.7 6.9 154 33-252 24-185 (193)
43 2nzj_A GTP-binding protein REM 99.4 2.9E-13 9.8E-18 126.0 9.7 155 33-253 3-167 (175)
44 2bme_A RAB4A, RAS-related prot 99.4 1.8E-13 6.1E-18 128.9 8.4 155 33-254 9-172 (186)
45 1mky_A Probable GTP-binding pr 99.4 1.3E-13 4.6E-18 148.7 8.4 157 34-255 1-166 (439)
46 3geh_A MNME, tRNA modification 99.4 8.4E-14 2.9E-18 150.4 6.7 154 35-252 225-381 (462)
47 2fn4_A P23, RAS-related protei 99.4 1.4E-13 4.9E-18 128.6 7.4 155 33-254 8-171 (181)
48 1g16_A RAS-related protein SEC 99.4 1.3E-13 4.3E-18 127.6 6.8 152 34-253 3-163 (170)
49 3kkq_A RAS-related protein M-R 99.4 2.4E-13 8.2E-18 127.8 8.6 154 32-252 16-179 (183)
50 2erx_A GTP-binding protein DI- 99.4 2.4E-13 8.2E-18 125.9 8.4 101 137-250 52-162 (172)
51 1c1y_A RAS-related protein RAP 99.4 1.7E-13 5.8E-18 126.4 7.4 149 35-250 4-162 (167)
52 2lkc_A Translation initiation 99.4 3.4E-13 1.2E-17 125.9 9.5 154 32-253 6-169 (178)
53 4djt_A GTP-binding nuclear pro 99.4 9.3E-14 3.2E-18 134.8 5.8 106 137-255 62-175 (218)
54 3a1s_A Iron(II) transport prot 99.4 1.6E-13 5.6E-18 137.3 7.4 151 33-251 4-163 (258)
55 2ew1_A RAS-related protein RAB 99.4 1.7E-13 5.9E-18 131.8 7.2 156 33-254 25-188 (201)
56 2qtf_A Protein HFLX, GTP-bindi 99.4 1.5E-12 5E-17 136.6 14.8 171 33-263 178-362 (364)
57 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.9E-13 9.9E-18 126.3 8.4 153 33-251 6-170 (177)
58 2bcg_Y Protein YP2, GTP-bindin 99.4 1.7E-13 5.7E-18 131.8 6.7 155 33-253 7-169 (206)
59 2hup_A RAS-related protein RAB 99.4 3.2E-13 1.1E-17 129.6 8.7 155 33-254 28-192 (201)
60 4dsu_A GTPase KRAS, isoform 2B 99.4 3.2E-13 1.1E-17 127.3 8.4 152 34-253 4-164 (189)
61 2efe_B Small GTP-binding prote 99.4 3.1E-13 1.1E-17 126.6 8.3 152 33-250 11-170 (181)
62 2ce2_X GTPase HRAS; signaling 99.4 4.6E-13 1.6E-17 122.9 9.2 149 35-251 4-161 (166)
63 2gf9_A RAS-related protein RAB 99.4 1.3E-13 4.6E-18 130.6 5.7 155 33-253 21-183 (189)
64 1ky3_A GTP-binding protein YPT 99.4 3.6E-13 1.2E-17 126.0 8.5 156 33-253 7-176 (182)
65 3t5d_A Septin-7; GTP-binding p 99.4 2.5E-13 8.5E-18 137.2 7.9 170 34-249 8-198 (274)
66 2hjg_A GTP-binding protein ENG 99.4 3E-13 1E-17 145.8 9.0 155 34-253 3-163 (436)
67 3b1v_A Ferrous iron uptake tra 99.4 2.1E-13 7.2E-18 137.5 7.2 149 34-250 3-159 (272)
68 2y8e_A RAB-protein 6, GH09086P 99.4 2.2E-13 7.6E-18 127.1 6.9 150 35-250 15-172 (179)
69 1ek0_A Protein (GTP-binding pr 99.4 3.1E-13 1.1E-17 124.8 7.7 100 137-249 53-163 (170)
70 3cph_A RAS-related protein SEC 99.4 3.4E-13 1.1E-17 130.1 8.2 157 33-256 19-183 (213)
71 1r2q_A RAS-related protein RAB 99.4 2.3E-13 7.7E-18 125.8 6.7 100 137-250 56-164 (170)
72 1z06_A RAS-related protein RAB 99.4 1.8E-13 6.3E-18 129.6 6.2 150 33-248 19-181 (189)
73 2hxs_A RAB-26, RAS-related pro 99.4 1.1E-13 3.6E-18 129.4 4.2 154 33-251 5-169 (178)
74 3t5g_A GTP-binding protein RHE 99.4 2.4E-13 8.1E-18 127.6 6.6 154 33-253 5-167 (181)
75 4bas_A ADP-ribosylation factor 99.4 8.6E-13 2.9E-17 125.6 10.5 155 32-255 15-189 (199)
76 2a5j_A RAS-related protein RAB 99.4 2E-13 6.9E-18 129.7 6.0 155 33-253 20-182 (191)
77 1zj6_A ADP-ribosylation factor 99.4 1.3E-12 4.5E-17 123.4 11.6 149 33-252 15-175 (187)
78 2p5s_A RAS and EF-hand domain 99.4 2.7E-13 9.3E-18 129.7 6.8 152 33-250 27-192 (199)
79 3dz8_A RAS-related protein RAB 99.4 1.1E-13 3.9E-18 131.4 4.1 154 33-252 22-183 (191)
80 1vg8_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 128.8 8.1 155 33-253 7-173 (207)
81 3q85_A GTP-binding protein REM 99.4 3.5E-13 1.2E-17 124.7 7.2 104 137-252 52-164 (169)
82 1r8s_A ADP-ribosylation factor 99.4 1.5E-12 5.2E-17 119.8 11.3 102 136-251 44-158 (164)
83 2cxx_A Probable GTP-binding pr 99.4 9.6E-13 3.3E-17 124.2 10.1 157 34-252 1-181 (190)
84 3oes_A GTPase rhebl1; small GT 99.4 2.1E-13 7.2E-18 130.7 5.3 155 33-254 23-186 (201)
85 4dcu_A GTP-binding protein ENG 99.4 2.8E-12 9.7E-17 139.0 14.8 161 33-251 194-365 (456)
86 4dcu_A GTP-binding protein ENG 99.4 6.7E-13 2.3E-17 143.9 9.9 155 32-251 21-181 (456)
87 1upt_A ARL1, ADP-ribosylation 99.4 5.3E-13 1.8E-17 123.6 7.8 149 33-252 6-166 (171)
88 2hjg_A GTP-binding protein ENG 99.4 2.3E-12 7.9E-17 138.9 14.0 163 33-252 174-346 (436)
89 3k53_A Ferrous iron transport 99.4 2.1E-13 7.2E-18 137.5 5.0 153 33-252 2-163 (271)
90 2wji_A Ferrous iron transport 99.4 2.7E-13 9.1E-18 125.8 5.0 148 35-250 4-160 (165)
91 2f7s_A C25KG, RAS-related prot 99.4 5.5E-13 1.9E-17 129.2 7.0 105 137-254 85-198 (217)
92 2gj8_A MNME, tRNA modification 99.4 1.4E-12 4.8E-17 122.0 9.5 150 34-250 4-161 (172)
93 2o52_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 128.6 6.0 156 33-255 24-188 (200)
94 2fu5_C RAS-related protein RAB 99.4 2.9E-13 1E-17 127.2 4.6 104 137-253 58-169 (183)
95 3con_A GTPase NRAS; structural 99.4 1.6E-12 5.5E-17 123.0 9.7 153 33-253 20-181 (190)
96 1x3s_A RAS-related protein RAB 99.4 5.6E-13 1.9E-17 126.4 6.5 157 33-256 14-179 (195)
97 3qq5_A Small GTP-binding prote 99.4 9.8E-13 3.3E-17 140.3 8.8 158 33-253 33-194 (423)
98 2h57_A ADP-ribosylation factor 99.4 1.6E-12 5.4E-17 123.2 9.3 150 33-251 20-183 (190)
99 1ksh_A ARF-like protein 2; sma 99.3 2.1E-12 7.1E-17 121.7 10.0 152 33-256 17-181 (186)
100 2atv_A RERG, RAS-like estrogen 99.3 1.3E-12 4.4E-17 124.6 8.6 152 33-253 27-189 (196)
101 2q3h_A RAS homolog gene family 99.3 7.6E-13 2.6E-17 126.5 6.8 114 32-212 18-139 (201)
102 1zd9_A ADP-ribosylation factor 99.3 2.8E-12 9.6E-17 121.4 10.6 147 33-250 21-180 (188)
103 2gf0_A GTP-binding protein DI- 99.3 1.9E-12 6.4E-17 123.3 8.6 151 33-251 7-167 (199)
104 3cbq_A GTP-binding protein REM 99.3 3.3E-12 1.1E-16 122.0 9.8 103 137-252 73-185 (195)
105 1fzq_A ADP-ribosylation factor 99.3 3.2E-12 1.1E-16 120.4 9.5 147 33-251 15-174 (181)
106 3reg_A RHO-like small GTPase; 99.3 1.2E-12 4E-17 124.6 6.5 152 33-251 22-184 (194)
107 2yc2_C IFT27, small RAB-relate 99.3 7E-13 2.4E-17 127.1 4.8 100 137-250 74-187 (208)
108 4dkx_A RAS-related protein RAB 99.3 1.9E-12 6.6E-17 125.9 7.7 102 137-251 63-172 (216)
109 2fh5_B SR-beta, signal recogni 99.3 3.4E-12 1.2E-16 123.3 9.4 113 33-213 6-131 (214)
110 2h17_A ADP-ribosylation factor 99.3 2.7E-12 9.2E-17 120.7 8.4 146 32-249 19-177 (181)
111 1lnz_A SPO0B-associated GTP-bi 99.3 6E-13 2.1E-17 138.3 4.2 158 34-253 158-328 (342)
112 3gj0_A GTP-binding nuclear pro 99.3 5.4E-13 1.9E-17 129.8 3.5 105 137-256 65-176 (221)
113 1moz_A ARL1, ADP-ribosylation 99.3 3.6E-12 1.2E-16 119.6 8.9 151 33-254 17-179 (183)
114 3t1o_A Gliding protein MGLA; G 99.3 1.9E-12 6.4E-17 122.8 7.1 100 137-253 75-190 (198)
115 2x77_A ADP-ribosylation factor 99.3 1.2E-12 4E-17 123.9 5.4 149 33-253 21-182 (189)
116 3llu_A RAS-related GTP-binding 99.3 9.7E-12 3.3E-16 118.6 11.6 152 32-250 18-192 (196)
117 2j1l_A RHO-related GTP-binding 99.3 2.4E-12 8.3E-17 124.7 7.3 151 33-251 33-205 (214)
118 2gco_A H9, RHO-related GTP-bin 99.3 2.3E-12 8E-17 123.4 7.0 113 33-212 24-144 (201)
119 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.9E-12 6.4E-17 121.6 5.9 150 34-250 5-175 (186)
120 2wjg_A FEOB, ferrous iron tran 99.3 9.9E-13 3.4E-17 124.1 3.7 154 33-253 6-167 (188)
121 2atx_A Small GTP binding prote 99.3 4.1E-12 1.4E-16 120.7 7.9 112 34-212 18-137 (194)
122 2b6h_A ADP-ribosylation factor 99.3 5.5E-12 1.9E-16 120.0 8.8 146 33-250 28-186 (192)
123 3cpj_B GTP-binding protein YPT 99.3 1.3E-12 4.3E-17 127.5 4.4 151 33-250 12-171 (223)
124 2fv8_A H6, RHO-related GTP-bin 99.3 2.1E-12 7.3E-17 124.3 5.9 150 34-251 25-196 (207)
125 1m2o_B GTP-binding protein SAR 99.3 1.1E-11 3.8E-16 117.7 10.4 146 33-249 22-186 (190)
126 3c5c_A RAS-like protein 12; GD 99.3 4E-12 1.4E-16 120.4 7.0 150 33-251 20-182 (187)
127 3q3j_B RHO-related GTP-binding 99.3 4E-12 1.4E-16 123.3 6.9 154 33-253 26-201 (214)
128 3l0i_B RAS-related protein RAB 99.3 1.7E-13 5.8E-18 131.1 -2.8 147 33-249 32-190 (199)
129 1f6b_A SAR1; gtpases, N-termin 99.3 7.6E-12 2.6E-16 119.7 8.7 146 33-249 24-193 (198)
130 3bwd_D RAC-like GTP-binding pr 99.3 1.1E-12 3.6E-17 123.0 2.3 149 33-249 7-175 (182)
131 2e87_A Hypothetical protein PH 99.3 2.5E-11 8.4E-16 127.3 12.9 159 32-252 165-333 (357)
132 1m7b_A RND3/RHOE small GTP-bin 99.2 4.1E-12 1.4E-16 119.8 5.6 150 33-250 6-178 (184)
133 2j0v_A RAC-like GTP-binding pr 99.2 2.2E-12 7.4E-17 124.5 3.7 150 33-250 8-175 (212)
134 1h65_A Chloroplast outer envel 99.2 3.2E-11 1.1E-15 121.4 11.9 120 33-213 38-170 (270)
135 2iwr_A Centaurin gamma 1; ANK 99.2 1.8E-11 6.1E-16 114.3 9.3 145 33-251 6-165 (178)
136 4gzl_A RAS-related C3 botulinu 99.2 4.3E-12 1.5E-16 122.0 5.1 114 33-213 29-150 (204)
137 1gwn_A RHO-related GTP-binding 99.2 7.3E-12 2.5E-16 120.7 5.9 112 33-211 27-146 (205)
138 3th5_A RAS-related C3 botulinu 98.8 1.4E-12 4.8E-17 125.2 0.0 150 33-249 29-199 (204)
139 3ihw_A Centg3; RAS, centaurin, 99.2 2.7E-11 9.3E-16 114.4 9.0 147 33-253 19-178 (184)
140 3o47_A ADP-ribosylation factor 99.2 2.2E-11 7.6E-16 126.2 8.7 145 36-252 167-324 (329)
141 3def_A T7I23.11 protein; chlor 99.2 8.9E-11 3.1E-15 117.6 12.3 119 33-212 35-166 (262)
142 1mky_A Probable GTP-binding pr 99.2 9.5E-11 3.3E-15 126.3 12.7 163 33-251 179-351 (439)
143 4a9a_A Ribosome-interacting GT 99.2 2.5E-11 8.7E-16 127.0 7.8 115 33-209 71-194 (376)
144 2ged_A SR-beta, signal recogni 99.2 6.8E-11 2.3E-15 112.0 10.1 113 33-213 47-172 (193)
145 1wxq_A GTP-binding protein; st 99.2 7.6E-12 2.6E-16 132.7 3.7 39 36-74 2-40 (397)
146 2g3y_A GTP-binding protein GEM 99.2 4.9E-11 1.7E-15 115.5 8.7 104 137-252 88-200 (211)
147 3p26_A Elongation factor 1 alp 99.2 4.7E-11 1.6E-15 130.3 9.0 107 127-247 103-230 (483)
148 3izy_P Translation initiation 99.1 5.6E-12 1.9E-16 137.9 1.3 153 33-252 3-165 (537)
149 3lvq_E ARF-GAP with SH3 domain 99.1 1.1E-10 3.9E-15 127.8 11.6 146 34-251 322-480 (497)
150 3sjy_A Translation initiation 99.1 9.3E-11 3.2E-15 125.0 10.1 100 137-250 76-187 (403)
151 3dpu_A RAB family protein; roc 99.1 6.3E-11 2.1E-15 131.0 8.7 105 136-254 98-207 (535)
152 3izq_1 HBS1P, elongation facto 99.1 7.9E-11 2.7E-15 131.6 9.3 177 33-246 166-363 (611)
153 3r7w_A Gtpase1, GTP-binding pr 99.1 1E-10 3.5E-15 120.0 9.1 68 136-211 52-129 (307)
154 2wkq_A NPH1-1, RAS-related C3 99.1 3.5E-11 1.2E-15 124.1 5.6 151 33-250 154-325 (332)
155 3j2k_7 ERF3, eukaryotic polype 99.1 2.1E-10 7.3E-15 123.4 11.6 98 136-246 95-216 (439)
156 2www_A Methylmalonic aciduria 99.1 5.7E-11 1.9E-15 124.0 6.6 140 136-295 167-316 (349)
157 3p32_A Probable GTPase RV1496/ 99.1 4.2E-10 1.4E-14 117.8 13.2 104 136-255 172-284 (355)
158 2zej_A Dardarin, leucine-rich 99.1 3E-11 1E-15 113.9 3.7 100 137-249 57-172 (184)
159 1wb1_A Translation elongation 99.1 8.9E-11 3.1E-15 127.8 7.9 104 136-253 73-187 (482)
160 1nrj_B SR-beta, signal recogni 99.1 4E-10 1.4E-14 108.9 11.1 110 33-214 11-137 (218)
161 1zo1_I IF2, translation initia 99.1 3.6E-11 1.2E-15 130.4 3.5 149 33-249 3-161 (501)
162 2f9l_A RAB11B, member RAS onco 99.1 8.8E-11 3E-15 112.2 5.4 155 33-253 4-166 (199)
163 2cjw_A GTP-binding protein GEM 99.0 1.7E-10 5.9E-15 109.7 6.8 104 137-252 57-169 (192)
164 2qag_A Septin-2, protein NEDD5 99.0 9.5E-11 3.2E-15 122.9 5.4 110 137-248 96-226 (361)
165 3tr5_A RF-3, peptide chain rel 99.0 3.5E-10 1.2E-14 124.1 9.7 134 33-212 12-149 (528)
166 1kk1_A EIF2gamma; initiation o 99.0 7.4E-10 2.5E-14 118.3 11.2 100 137-250 84-195 (410)
167 1s0u_A EIF-2-gamma, translatio 99.0 1.4E-09 4.7E-14 116.1 13.0 100 137-250 82-193 (408)
168 1g7s_A Translation initiation 99.0 2E-10 7E-15 127.5 6.6 62 137-211 71-136 (594)
169 2ywe_A GTP-binding protein LEP 99.0 5E-10 1.7E-14 124.1 9.6 167 33-251 5-180 (600)
170 1zun_B Sulfate adenylate trans 99.0 8.3E-10 2.8E-14 118.7 11.1 98 136-246 104-215 (434)
171 3cb4_D GTP-binding protein LEP 99.0 4.4E-10 1.5E-14 124.8 8.2 167 33-251 3-178 (599)
172 2elf_A Protein translation elo 99.0 2.2E-09 7.6E-14 112.7 11.6 58 137-209 61-125 (370)
173 2c78_A Elongation factor TU-A; 99.0 1.1E-09 3.7E-14 116.8 9.3 63 136-211 75-142 (405)
174 1f60_A Elongation factor EEF1A 98.9 1.1E-09 3.9E-14 118.4 8.7 176 33-246 6-203 (458)
175 1udx_A The GTP-binding protein 98.9 3.7E-09 1.3E-13 112.4 11.7 158 34-253 157-323 (416)
176 1oix_A RAS-related protein RAB 98.9 5E-10 1.7E-14 106.3 4.4 27 33-59 28-54 (191)
177 1pui_A ENGB, probable GTP-bind 98.9 3.2E-09 1.1E-13 101.9 10.0 112 137-251 73-195 (210)
178 1jny_A EF-1-alpha, elongation 98.9 3.5E-09 1.2E-13 113.8 10.3 98 136-246 84-204 (435)
179 2p67_A LAO/AO transport system 98.9 4.6E-09 1.6E-13 109.2 10.5 100 136-253 149-259 (341)
180 2h5e_A Peptide chain release f 98.9 4.2E-09 1.4E-13 115.6 9.8 64 136-212 82-149 (529)
181 1d2e_A Elongation factor TU (E 98.8 3.1E-09 1.1E-13 112.9 7.7 63 136-211 66-133 (397)
182 3mca_A HBS1, elongation factor 98.8 1.1E-10 3.6E-15 130.2 -4.0 97 136-245 255-373 (592)
183 1jal_A YCHF protein; nucleotid 98.8 3.8E-09 1.3E-13 109.9 7.1 37 35-71 3-39 (363)
184 3c5h_A Glucocorticoid receptor 98.8 3.7E-09 1.2E-13 105.3 6.0 77 172-250 162-250 (255)
185 2qm8_A GTPase/ATPase; G protei 98.8 2.3E-08 7.9E-13 103.7 11.4 101 136-253 148-259 (337)
186 2xex_A Elongation factor G; GT 98.8 5.9E-09 2E-13 118.3 7.4 64 136-212 75-142 (693)
187 1r5b_A Eukaryotic peptide chai 98.7 1.2E-08 4E-13 110.7 8.2 99 136-247 121-244 (467)
188 3avx_A Elongation factor TS, e 98.7 1.5E-08 5.2E-13 117.8 8.4 91 136-239 359-462 (1289)
189 1dar_A EF-G, elongation factor 98.7 2E-08 6.7E-13 114.0 8.6 64 136-212 77-144 (691)
190 3r7w_B Gtpase2, GTP-binding pr 98.7 4.3E-08 1.5E-12 100.2 9.6 67 136-212 46-121 (331)
191 2rdo_7 EF-G, elongation factor 98.7 7.5E-08 2.6E-12 109.3 12.1 64 136-212 82-149 (704)
192 2qag_C Septin-7; cell cycle, c 98.6 6.6E-08 2.3E-12 102.8 10.4 25 36-60 33-57 (418)
193 3ec1_A YQEH GTPase; atnos1, at 98.6 9.7E-09 3.3E-13 107.9 4.0 23 35-57 163-185 (369)
194 2qnr_A Septin-2, protein NEDD5 98.6 1.3E-08 4.4E-13 103.9 4.7 120 136-256 76-215 (301)
195 1n0u_A EF-2, elongation factor 98.6 2.2E-08 7.5E-13 116.0 7.1 62 136-210 98-163 (842)
196 2dy1_A Elongation factor G; tr 98.6 5.6E-08 1.9E-12 109.8 10.2 128 33-210 8-139 (665)
197 2ohf_A Protein OLA1, GTP-bindi 98.6 2.6E-08 9E-13 104.6 6.6 107 33-183 21-127 (396)
198 3vqt_A RF-3, peptide chain rel 98.6 1.7E-07 5.7E-12 103.4 10.8 132 34-212 31-167 (548)
199 3h2y_A GTPase family protein; 98.6 3.3E-08 1.1E-12 103.7 4.9 24 35-58 161-184 (368)
200 2qag_B Septin-6, protein NEDD5 98.5 9.5E-08 3.3E-12 101.2 8.1 26 34-59 42-67 (427)
201 2dby_A GTP-binding protein; GD 98.5 1.1E-07 3.6E-12 99.5 8.1 110 35-184 2-111 (368)
202 2wsm_A Hydrogenase expression/ 98.5 4.9E-08 1.7E-12 94.4 3.7 101 135-251 108-210 (221)
203 1yrb_A ATP(GTP)binding protein 98.5 7.2E-07 2.5E-11 88.5 11.8 27 33-59 13-44 (262)
204 3j25_A Tetracycline resistance 98.5 1.3E-07 4.6E-12 106.2 6.8 128 35-212 3-134 (638)
205 4fn5_A EF-G 1, elongation fact 98.4 3E-07 1E-11 104.7 9.0 132 33-211 12-151 (709)
206 3sop_A Neuronal-specific septi 98.4 8.1E-07 2.8E-11 89.0 10.0 24 35-58 3-26 (270)
207 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 5.6E-07 1.9E-11 94.7 7.9 41 33-73 19-60 (392)
208 2j37_W Signal recognition part 98.3 1.6E-06 5.5E-11 94.1 11.5 76 136-219 184-262 (504)
209 2hf9_A Probable hydrogenase ni 98.2 1.2E-06 4.1E-11 84.8 6.4 26 33-58 37-62 (226)
210 1puj_A YLQF, conserved hypothe 98.2 6.9E-07 2.4E-11 90.1 4.4 31 33-63 119-149 (282)
211 1tq4_A IIGP1, interferon-induc 98.1 7.6E-06 2.6E-10 86.6 10.6 26 33-58 68-93 (413)
212 1f5n_A Interferon-induced guan 98.1 4E-06 1.4E-10 92.5 8.6 27 33-59 37-63 (592)
213 3dm5_A SRP54, signal recogniti 98.1 9.1E-05 3.1E-09 78.8 17.6 98 136-247 183-283 (443)
214 3cnl_A YLQF, putative uncharac 98.0 4.2E-06 1.4E-10 83.4 5.0 25 35-59 100-124 (262)
215 3kl4_A SRP54, signal recogniti 97.9 6.9E-05 2.4E-09 79.6 12.2 80 135-220 179-261 (433)
216 2v3c_C SRP54, signal recogniti 97.9 3.4E-05 1.1E-09 82.4 9.5 23 35-57 100-122 (432)
217 1rj9_A FTSY, signal recognitio 97.7 0.00025 8.5E-09 72.0 11.8 83 137-220 186-270 (304)
218 3q5d_A Atlastin-1; G protein, 97.6 1.6E-05 5.6E-10 84.8 2.6 25 33-57 66-90 (447)
219 1j8m_F SRP54, signal recogniti 97.5 0.00056 1.9E-08 69.2 11.3 22 36-57 100-121 (297)
220 3e70_C DPA, signal recognition 97.5 0.00059 2E-08 70.0 11.4 73 137-220 213-291 (328)
221 2yhs_A FTSY, cell division pro 97.5 0.00046 1.6E-08 74.1 10.9 76 137-221 377-462 (503)
222 2xxa_A Signal recognition part 97.4 0.0012 4.2E-08 70.3 13.5 75 136-219 184-262 (433)
223 1vma_A Cell division protein F 97.2 0.00023 7.9E-09 72.3 5.3 22 36-57 106-127 (306)
224 2px0_A Flagellar biosynthesis 97.1 0.0017 5.9E-08 65.6 10.5 23 35-57 106-128 (296)
225 3b9q_A Chloroplast SRP recepto 96.9 0.0019 6.4E-08 65.5 8.3 82 137-220 185-269 (302)
226 1zu4_A FTSY; GTPase, signal re 96.9 0.0077 2.6E-07 61.4 12.6 22 36-57 107-128 (320)
227 2ffh_A Protein (FFH); SRP54, s 96.9 0.0023 7.8E-08 67.8 8.8 22 36-57 100-121 (425)
228 2og2_A Putative signal recogni 96.8 0.0042 1.4E-07 64.3 10.4 82 137-220 242-326 (359)
229 1t9h_A YLOQ, probable GTPase E 96.6 0.00076 2.6E-08 68.4 2.4 24 35-58 174-197 (307)
230 2i3b_A HCR-ntpase, human cance 96.6 0.0066 2.2E-07 57.0 8.7 22 36-57 3-24 (189)
231 1cip_A Protein (guanine nucleo 96.3 0.0012 4.2E-08 68.3 2.1 63 135-210 192-273 (353)
232 1ls1_A Signal recognition part 96.2 0.0088 3E-07 60.3 7.8 22 36-57 100-121 (295)
233 1zcb_A G alpha I/13; GTP-bindi 96.1 0.003 1E-07 65.7 4.0 62 136-210 201-281 (362)
234 4ido_A Atlastin-1; GTPase, GTP 96.0 0.0028 9.6E-08 67.2 3.3 22 34-55 67-88 (457)
235 2yv5_A YJEQ protein; hydrolase 95.8 0.0079 2.7E-07 60.8 5.5 21 35-55 166-186 (302)
236 3ney_A 55 kDa erythrocyte memb 95.6 0.0046 1.6E-07 58.4 2.3 37 33-71 18-58 (197)
237 1u0l_A Probable GTPase ENGC; p 95.6 0.0027 9.3E-08 64.2 0.7 95 137-248 64-166 (301)
238 3tif_A Uncharacterized ABC tra 95.3 0.0087 3E-07 58.2 3.3 23 36-58 33-55 (235)
239 1ex7_A Guanylate kinase; subst 95.2 0.0071 2.4E-07 56.5 2.2 35 37-71 4-40 (186)
240 2pcj_A ABC transporter, lipopr 95.1 0.0093 3.2E-07 57.5 3.0 23 36-58 32-54 (224)
241 4g1u_C Hemin import ATP-bindin 95.1 0.012 4.1E-07 58.3 3.7 22 36-57 39-60 (266)
242 2rcn_A Probable GTPase ENGC; Y 95.1 0.013 4.4E-07 60.6 4.0 23 36-58 217-239 (358)
243 1g6h_A High-affinity branched- 95.1 0.011 3.7E-07 58.3 3.3 23 36-58 35-57 (257)
244 1lvg_A Guanylate kinase, GMP k 95.0 0.0084 2.9E-07 56.5 2.3 22 36-57 6-27 (198)
245 1kgd_A CASK, peripheral plasma 95.0 0.0087 3E-07 55.4 2.3 23 35-57 6-28 (180)
246 1mv5_A LMRA, multidrug resista 95.0 0.014 4.7E-07 57.1 3.8 23 36-58 30-52 (243)
247 3gfo_A Cobalt import ATP-bindi 95.0 0.011 3.8E-07 58.8 3.2 22 36-57 36-57 (275)
248 1ye8_A Protein THEP1, hypothet 95.0 0.0094 3.2E-07 55.3 2.5 22 36-57 2-23 (178)
249 1sgw_A Putative ABC transporte 95.0 0.012 4E-07 56.4 3.2 22 36-57 37-58 (214)
250 2onk_A Molybdate/tungstate ABC 94.9 0.012 4.2E-07 57.3 3.2 24 35-58 25-48 (240)
251 1b0u_A Histidine permease; ABC 94.9 0.012 4.1E-07 58.2 3.2 22 36-57 34-55 (262)
252 2pze_A Cystic fibrosis transme 94.9 0.013 4.3E-07 56.8 3.2 22 36-57 36-57 (229)
253 1znw_A Guanylate kinase, GMP k 94.9 0.01 3.4E-07 56.3 2.4 22 36-57 22-43 (207)
254 3tau_A Guanylate kinase, GMP k 94.8 0.013 4.5E-07 55.5 3.1 23 35-57 9-31 (208)
255 1ji0_A ABC transporter; ATP bi 94.8 0.014 4.7E-07 56.9 3.3 23 36-58 34-56 (240)
256 2ff7_A Alpha-hemolysin translo 94.8 0.015 5E-07 57.0 3.4 23 36-58 37-59 (247)
257 1u0l_A Probable GTPase ENGC; p 94.8 0.016 5.5E-07 58.5 3.7 24 35-58 170-193 (301)
258 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.013 4.3E-07 60.1 3.0 28 36-65 173-200 (330)
259 1vpl_A ABC transporter, ATP-bi 94.8 0.014 4.9E-07 57.4 3.2 23 36-58 43-65 (256)
260 2olj_A Amino acid ABC transpor 94.7 0.015 5E-07 57.6 3.2 22 36-57 52-73 (263)
261 1puj_A YLQF, conserved hypothe 94.7 0.045 1.5E-06 54.6 6.8 86 163-252 14-103 (282)
262 2gza_A Type IV secretion syste 94.7 0.014 4.9E-07 60.5 3.2 28 36-65 177-204 (361)
263 1zp6_A Hypothetical protein AT 94.7 0.015 5E-07 54.0 2.9 22 36-57 11-32 (191)
264 2nq2_C Hypothetical ABC transp 94.7 0.015 5.2E-07 57.1 3.2 31 36-68 33-63 (253)
265 4fid_A G protein alpha subunit 94.7 0.032 1.1E-06 57.1 5.6 64 135-211 160-242 (340)
266 2ixe_A Antigen peptide transpo 94.6 0.017 5.8E-07 57.4 3.4 22 36-57 47-68 (271)
267 3tr0_A Guanylate kinase, GMP k 94.6 0.013 4.3E-07 55.1 2.3 22 36-57 9-30 (205)
268 2ihy_A ABC transporter, ATP-bi 94.6 0.018 6.1E-07 57.5 3.4 22 36-57 49-70 (279)
269 2yz2_A Putative ABC transporte 94.6 0.017 5.9E-07 57.1 3.3 22 36-57 35-56 (266)
270 2oap_1 GSPE-2, type II secreti 94.5 0.015 5.2E-07 63.2 3.0 31 36-68 262-292 (511)
271 3c8u_A Fructokinase; YP_612366 94.5 0.013 4.5E-07 55.5 2.2 23 35-57 23-45 (208)
272 1s96_A Guanylate kinase, GMP k 94.5 0.014 4.7E-07 56.1 2.3 23 35-57 17-39 (219)
273 1z6g_A Guanylate kinase; struc 94.5 0.014 4.9E-07 55.8 2.4 22 36-57 25-46 (218)
274 2d2e_A SUFC protein; ABC-ATPas 94.5 0.018 6E-07 56.5 3.0 22 36-57 31-52 (250)
275 3a00_A Guanylate kinase, GMP k 94.5 0.015 5E-07 54.1 2.3 22 36-57 3-24 (186)
276 3ohm_A Guanine nucleotide-bind 94.4 0.013 4.4E-07 59.8 2.1 63 136-211 167-248 (327)
277 2cbz_A Multidrug resistance-as 94.3 0.021 7.2E-07 55.5 3.2 22 36-57 33-54 (237)
278 3nh6_A ATP-binding cassette SU 94.3 0.015 5.3E-07 58.7 2.2 22 36-57 82-103 (306)
279 4gp7_A Metallophosphoesterase; 94.2 0.022 7.7E-07 52.1 2.9 21 36-56 11-31 (171)
280 1np6_A Molybdopterin-guanine d 94.2 0.021 7.2E-07 52.7 2.8 25 33-57 5-29 (174)
281 2qi9_C Vitamin B12 import ATP- 94.1 0.025 8.6E-07 55.4 3.2 23 36-58 28-50 (249)
282 1htw_A HI0065; nucleotide-bind 94.1 0.02 6.9E-07 51.9 2.4 22 36-57 35-56 (158)
283 2zu0_C Probable ATP-dependent 94.1 0.025 8.5E-07 56.0 3.2 22 36-57 48-69 (267)
284 2ghi_A Transport protein; mult 94.0 0.027 9.3E-07 55.5 3.2 23 36-58 48-70 (260)
285 2yv5_A YJEQ protein; hydrolase 93.9 0.016 5.4E-07 58.6 1.5 82 165-247 72-161 (302)
286 3h2y_A GTPase family protein; 93.9 0.043 1.5E-06 57.0 4.7 92 160-251 57-156 (368)
287 2eyu_A Twitching motility prot 93.9 0.022 7.6E-07 56.2 2.4 22 36-57 27-48 (261)
288 2qor_A Guanylate kinase; phosp 93.9 0.02 6.9E-07 54.0 2.0 24 34-57 12-35 (204)
289 2bbs_A Cystic fibrosis transme 93.8 0.025 8.7E-07 56.7 2.8 22 36-57 66-87 (290)
290 3asz_A Uridine kinase; cytidin 93.8 0.023 7.8E-07 53.7 2.3 22 36-57 8-29 (211)
291 4dzz_A Plasmid partitioning pr 93.8 0.09 3.1E-06 49.0 6.4 60 136-210 76-143 (206)
292 2v9p_A Replication protein E1; 93.7 0.025 8.5E-07 57.1 2.5 22 36-57 128-149 (305)
293 3ec2_A DNA replication protein 93.7 0.045 1.5E-06 50.3 4.0 23 35-57 39-61 (180)
294 1kag_A SKI, shikimate kinase I 93.6 0.027 9.1E-07 51.3 2.3 23 35-57 5-27 (173)
295 2j41_A Guanylate kinase; GMP, 93.6 0.028 9.4E-07 52.7 2.5 23 35-57 7-29 (207)
296 2f1r_A Molybdopterin-guanine d 93.6 0.014 4.9E-07 53.7 0.5 23 35-57 3-25 (171)
297 3tui_C Methionine import ATP-b 93.6 0.034 1.2E-06 57.5 3.2 23 36-58 56-78 (366)
298 3b85_A Phosphate starvation-in 93.5 0.022 7.7E-07 54.1 1.7 22 36-57 24-45 (208)
299 2bdt_A BH3686; alpha-beta prot 93.4 0.031 1.1E-06 51.8 2.4 21 36-56 4-24 (189)
300 1z47_A CYSA, putative ABC-tran 93.4 0.039 1.3E-06 56.9 3.3 23 36-58 43-65 (355)
301 2pjz_A Hypothetical protein ST 93.4 0.044 1.5E-06 54.1 3.5 26 36-63 32-57 (263)
302 2bbw_A Adenylate kinase 4, AK4 93.4 0.041 1.4E-06 53.5 3.2 25 34-58 27-54 (246)
303 3fvq_A Fe(3+) IONS import ATP- 93.3 0.037 1.3E-06 57.1 3.0 23 36-58 32-54 (359)
304 4eun_A Thermoresistant glucoki 93.3 0.032 1.1E-06 52.4 2.3 23 35-57 30-52 (200)
305 1azs_C GS-alpha; complex (lyas 93.2 0.046 1.6E-06 57.4 3.5 63 136-211 217-298 (402)
306 3rlf_A Maltose/maltodextrin im 93.2 0.043 1.5E-06 57.1 3.2 23 36-58 31-53 (381)
307 2it1_A 362AA long hypothetical 93.2 0.043 1.5E-06 56.8 3.2 23 36-58 31-53 (362)
308 4a74_A DNA repair and recombin 93.2 0.049 1.7E-06 51.8 3.4 30 36-65 27-56 (231)
309 2yyz_A Sugar ABC transporter, 93.1 0.047 1.6E-06 56.4 3.4 23 36-58 31-53 (359)
310 3lw7_A Adenylate kinase relate 93.1 0.048 1.7E-06 49.2 3.1 20 35-54 2-21 (179)
311 1g29_1 MALK, maltose transport 93.1 0.046 1.6E-06 56.8 3.3 23 36-58 31-53 (372)
312 3aez_A Pantothenate kinase; tr 93.0 0.035 1.2E-06 56.3 2.3 22 36-57 92-113 (312)
313 3jvv_A Twitching mobility prot 93.0 0.036 1.2E-06 57.3 2.3 22 36-57 125-146 (356)
314 3lnc_A Guanylate kinase, GMP k 93.0 0.03 1E-06 53.8 1.6 22 36-57 29-51 (231)
315 1odf_A YGR205W, hypothetical 3 92.9 0.095 3.3E-06 52.5 5.3 24 34-57 31-54 (290)
316 3ec1_A YQEH GTPase; atnos1, at 92.9 0.059 2E-06 55.9 3.9 117 162-284 61-185 (369)
317 1v43_A Sugar-binding transport 92.9 0.05 1.7E-06 56.5 3.2 23 36-58 39-61 (372)
318 1knq_A Gluconate kinase; ALFA/ 92.8 0.042 1.4E-06 50.1 2.3 22 35-56 9-30 (175)
319 1cke_A CK, MSSA, protein (cyti 92.6 0.05 1.7E-06 51.8 2.6 23 35-57 6-28 (227)
320 3kb2_A SPBC2 prophage-derived 92.6 0.064 2.2E-06 48.4 3.2 22 35-56 2-23 (173)
321 3kta_A Chromosome segregation 92.5 0.046 1.6E-06 50.2 2.1 25 33-57 25-49 (182)
322 3d31_A Sulfate/molybdate ABC t 92.5 0.042 1.4E-06 56.6 2.0 23 36-58 28-50 (348)
323 3uie_A Adenylyl-sulfate kinase 92.5 0.05 1.7E-06 51.0 2.4 23 35-57 26-48 (200)
324 3l82_B F-box only protein 4; T 92.4 0.13 4.5E-06 48.7 5.1 105 138-250 98-218 (227)
325 1xjc_A MOBB protein homolog; s 92.3 0.077 2.6E-06 48.6 3.4 25 33-57 3-27 (169)
326 2xtz_A Guanine nucleotide-bind 92.3 0.052 1.8E-06 56.0 2.4 63 136-211 183-264 (354)
327 2jeo_A Uridine-cytidine kinase 92.3 0.053 1.8E-06 52.7 2.4 22 36-57 27-48 (245)
328 4e22_A Cytidylate kinase; P-lo 92.2 0.054 1.8E-06 53.0 2.3 26 34-59 27-55 (252)
329 1p9r_A General secretion pathw 92.2 0.053 1.8E-06 57.3 2.3 22 36-57 169-190 (418)
330 1oxx_K GLCV, glucose, ABC tran 92.2 0.039 1.3E-06 56.9 1.3 23 36-58 33-55 (353)
331 2ewv_A Twitching motility prot 92.1 0.054 1.8E-06 56.4 2.3 22 36-57 138-159 (372)
332 1lw7_A Transcriptional regulat 92.1 0.047 1.6E-06 56.5 1.9 23 35-57 171-193 (365)
333 1jjv_A Dephospho-COA kinase; P 92.1 0.072 2.5E-06 50.0 3.0 21 36-56 4-24 (206)
334 1nij_A Hypothetical protein YJ 92.1 0.041 1.4E-06 55.9 1.3 26 33-58 3-28 (318)
335 2if2_A Dephospho-COA kinase; a 92.0 0.059 2E-06 50.5 2.3 21 36-56 3-23 (204)
336 2qt1_A Nicotinamide riboside k 91.9 0.078 2.7E-06 49.8 3.0 22 36-57 23-44 (207)
337 3t61_A Gluconokinase; PSI-biol 91.9 0.067 2.3E-06 50.1 2.4 22 35-56 19-40 (202)
338 1sq5_A Pantothenate kinase; P- 91.7 0.061 2.1E-06 54.3 2.1 22 36-57 82-103 (308)
339 1ly1_A Polynucleotide kinase; 91.7 0.085 2.9E-06 48.0 2.9 21 36-56 4-24 (181)
340 2jaq_A Deoxyguanosine kinase; 91.7 0.091 3.1E-06 48.8 3.2 21 36-56 2-22 (205)
341 2ehv_A Hypothetical protein PH 91.7 0.068 2.3E-06 51.5 2.3 21 36-56 32-52 (251)
342 2vp4_A Deoxynucleoside kinase; 91.6 0.075 2.6E-06 51.1 2.5 22 36-57 22-43 (230)
343 2kjq_A DNAA-related protein; s 91.5 0.06 2.1E-06 48.1 1.6 24 34-57 36-59 (149)
344 3gd7_A Fusion complex of cysti 91.4 0.085 2.9E-06 55.1 2.8 22 36-57 49-70 (390)
345 1rz3_A Hypothetical protein rb 91.4 0.072 2.5E-06 50.0 2.1 23 35-57 23-45 (201)
346 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.07 2.4E-06 57.1 2.2 26 33-58 137-162 (460)
347 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.092 3.2E-06 46.9 2.7 23 33-55 22-44 (149)
348 4a82_A Cystic fibrosis transme 91.4 0.087 3E-06 58.2 3.0 23 36-58 369-391 (578)
349 1qhx_A CPT, protein (chloramph 91.1 0.1 3.6E-06 47.4 2.9 22 36-57 5-26 (178)
350 3vaa_A Shikimate kinase, SK; s 91.1 0.096 3.3E-06 49.0 2.6 22 35-56 26-47 (199)
351 3b5x_A Lipid A export ATP-bind 91.1 0.11 3.8E-06 57.3 3.5 23 36-58 371-393 (582)
352 3qf4_A ABC transporter, ATP-bi 91.0 0.1 3.4E-06 57.8 3.1 22 36-57 371-392 (587)
353 3b60_A Lipid A export ATP-bind 91.0 0.1 3.5E-06 57.7 3.1 23 36-58 371-393 (582)
354 3euj_A Chromosome partition pr 90.9 0.084 2.9E-06 56.6 2.3 23 35-57 30-52 (483)
355 3trf_A Shikimate kinase, SK; a 90.9 0.13 4.4E-06 47.2 3.2 22 34-55 5-26 (185)
356 1yqt_A RNAse L inhibitor; ATP- 90.8 0.15 5E-06 55.8 4.1 30 36-67 314-343 (538)
357 3ozx_A RNAse L inhibitor; ATP 90.8 0.14 4.6E-06 56.0 3.8 29 36-66 296-324 (538)
358 1nks_A Adenylate kinase; therm 90.8 0.11 3.7E-06 47.8 2.7 21 36-56 3-23 (194)
359 1kht_A Adenylate kinase; phosp 90.8 0.12 4E-06 47.5 2.9 22 35-56 4-25 (192)
360 3tqc_A Pantothenate kinase; bi 90.7 0.096 3.3E-06 53.2 2.3 22 36-57 94-115 (321)
361 1y63_A LMAJ004144AAA protein; 90.6 0.14 4.7E-06 47.3 3.2 24 34-57 10-33 (184)
362 3qf7_A RAD50; ABC-ATPase, ATPa 90.6 0.1 3.5E-06 54.0 2.5 23 33-55 22-44 (365)
363 2iyv_A Shikimate kinase, SK; t 90.6 0.13 4.3E-06 47.2 2.9 21 35-55 3-23 (184)
364 3qf4_B Uncharacterized ABC tra 90.6 0.1 3.4E-06 57.9 2.6 23 36-58 383-405 (598)
365 2yl4_A ATP-binding cassette SU 90.5 0.097 3.3E-06 58.0 2.4 22 36-57 372-393 (595)
366 3j16_B RLI1P; ribosome recycli 90.5 0.17 5.9E-06 56.0 4.4 23 36-58 105-127 (608)
367 3bk7_A ABC transporter ATP-bin 90.5 0.16 5.6E-06 56.2 4.1 30 36-67 384-413 (607)
368 1via_A Shikimate kinase; struc 90.4 0.14 4.7E-06 46.6 3.0 22 35-56 5-26 (175)
369 2rhm_A Putative kinase; P-loop 90.4 0.13 4.3E-06 47.5 2.7 22 35-56 6-27 (193)
370 3cm0_A Adenylate kinase; ATP-b 90.3 0.14 4.7E-06 47.0 2.9 20 36-55 6-25 (186)
371 1jbk_A CLPB protein; beta barr 90.2 0.31 1.1E-05 44.1 5.3 24 34-57 43-66 (195)
372 1yqt_A RNAse L inhibitor; ATP- 90.2 0.14 4.7E-06 56.0 3.2 23 36-58 49-71 (538)
373 3cnl_A YLQF, putative uncharac 90.2 0.12 4.2E-06 50.8 2.5 79 163-246 12-92 (262)
374 3iij_A Coilin-interacting nucl 90.2 0.16 5.6E-06 46.3 3.3 23 33-55 10-32 (180)
375 3fb4_A Adenylate kinase; psych 90.1 0.15 5.3E-06 48.0 3.1 20 36-55 2-21 (216)
376 2cdn_A Adenylate kinase; phosp 89.9 0.2 6.9E-06 46.7 3.7 24 33-56 18-42 (201)
377 2plr_A DTMP kinase, probable t 89.9 0.15 5.2E-06 47.6 2.9 22 35-56 5-26 (213)
378 3ozx_A RNAse L inhibitor; ATP 89.9 0.14 4.9E-06 55.8 3.0 23 36-58 27-49 (538)
379 2wwf_A Thymidilate kinase, put 89.8 0.21 7.1E-06 46.8 3.8 23 34-56 10-32 (212)
380 2c95_A Adenylate kinase 1; tra 89.8 0.17 6E-06 46.6 3.2 22 34-55 9-30 (196)
381 2pez_A Bifunctional 3'-phospho 89.8 0.13 4.5E-06 47.0 2.3 22 36-57 7-28 (179)
382 2v54_A DTMP kinase, thymidylat 89.8 0.16 5.4E-06 47.3 2.9 23 35-57 5-27 (204)
383 2ga8_A Hypothetical 39.9 kDa p 89.7 0.3 1E-05 50.0 5.1 25 33-57 23-47 (359)
384 2x8a_A Nuclear valosin-contain 89.7 0.13 4.5E-06 50.9 2.3 21 37-57 47-67 (274)
385 3dl0_A Adenylate kinase; phosp 89.7 0.17 6E-06 47.7 3.1 20 36-55 2-21 (216)
386 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.14 4.7E-06 48.6 2.4 22 36-57 25-46 (235)
387 2z0h_A DTMP kinase, thymidylat 89.6 0.17 5.9E-06 46.7 2.9 21 36-56 2-22 (197)
388 1e6c_A Shikimate kinase; phosp 89.5 0.18 6.1E-06 45.5 3.0 21 35-55 3-23 (173)
389 1ixz_A ATP-dependent metallopr 89.5 0.14 4.7E-06 49.8 2.3 21 37-57 52-72 (254)
390 3bk7_A ABC transporter ATP-bin 89.3 0.18 6E-06 55.9 3.2 23 36-58 119-141 (607)
391 2pbr_A DTMP kinase, thymidylat 89.2 0.19 6.4E-06 46.2 2.9 21 36-56 2-22 (195)
392 1gtv_A TMK, thymidylate kinase 89.2 0.085 2.9E-06 49.6 0.5 22 36-57 2-23 (214)
393 1cr0_A DNA primase/helicase; R 89.1 0.14 4.8E-06 51.0 2.1 22 36-57 37-58 (296)
394 2yvu_A Probable adenylyl-sulfa 89.1 0.19 6.6E-06 46.2 2.9 23 35-57 14-36 (186)
395 2bwj_A Adenylate kinase 5; pho 89.1 0.2 6.8E-06 46.3 3.0 22 35-56 13-34 (199)
396 2pt5_A Shikimate kinase, SK; a 89.1 0.21 7.1E-06 44.9 3.0 20 36-55 2-21 (168)
397 1tev_A UMP-CMP kinase; ploop, 89.0 0.2 6.7E-06 46.1 2.9 21 35-55 4-24 (196)
398 3l2o_B F-box only protein 4; s 89.0 0.5 1.7E-05 47.0 5.8 89 162-251 200-304 (312)
399 1nn5_A Similar to deoxythymidy 88.8 0.19 6.6E-06 47.1 2.7 22 35-56 10-31 (215)
400 3nwj_A ATSK2; P loop, shikimat 88.7 0.18 6E-06 49.3 2.4 23 34-56 48-70 (250)
401 3j16_B RLI1P; ribosome recycli 88.6 0.24 8.3E-06 54.8 3.7 22 37-58 381-402 (608)
402 1zd8_A GTP:AMP phosphotransfer 88.5 0.22 7.6E-06 47.4 3.0 22 34-55 7-28 (227)
403 3a4m_A L-seryl-tRNA(SEC) kinas 88.5 0.21 7.2E-06 48.9 2.8 23 34-56 4-26 (260)
404 3qks_A DNA double-strand break 88.3 0.22 7.5E-06 46.9 2.7 23 33-55 22-44 (203)
405 1iy2_A ATP-dependent metallopr 88.3 0.19 6.5E-06 49.6 2.3 21 37-57 76-96 (278)
406 1e4v_A Adenylate kinase; trans 88.2 0.23 8E-06 46.8 2.9 21 36-56 2-22 (214)
407 1qf9_A UMP/CMP kinase, protein 88.2 0.22 7.5E-06 45.6 2.6 21 35-55 7-27 (194)
408 1vht_A Dephospho-COA kinase; s 88.2 0.23 7.9E-06 46.9 2.8 22 35-56 5-26 (218)
409 1in4_A RUVB, holliday junction 88.1 0.22 7.4E-06 50.8 2.7 24 34-57 51-74 (334)
410 1t9h_A YLOQ, probable GTPase E 88.1 0.2 6.9E-06 50.5 2.4 47 167-213 81-133 (307)
411 1zak_A Adenylate kinase; ATP:A 88.1 0.23 7.9E-06 47.1 2.8 21 35-55 6-26 (222)
412 1aky_A Adenylate kinase; ATP:A 88.1 0.27 9.2E-06 46.6 3.2 22 35-56 5-26 (220)
413 3ake_A Cytidylate kinase; CMP 88.0 0.28 9.5E-06 45.7 3.3 22 35-56 3-24 (208)
414 1uf9_A TT1252 protein; P-loop, 87.9 0.25 8.6E-06 45.8 2.9 24 34-57 8-31 (203)
415 1ukz_A Uridylate kinase; trans 87.9 0.34 1.1E-05 45.1 3.7 23 34-56 15-37 (203)
416 1svm_A Large T antigen; AAA+ f 87.9 0.2 7E-06 52.0 2.4 22 36-57 171-192 (377)
417 2obl_A ESCN; ATPase, hydrolase 87.9 0.2 6.9E-06 51.4 2.3 23 36-58 73-95 (347)
418 1gvn_B Zeta; postsegregational 87.7 0.23 7.8E-06 49.5 2.6 21 36-56 35-55 (287)
419 2ze6_A Isopentenyl transferase 87.7 0.22 7.4E-06 48.6 2.3 21 36-56 3-23 (253)
420 2cvh_A DNA repair and recombin 87.4 0.24 8.1E-06 46.6 2.4 21 36-56 22-42 (220)
421 1qhl_A Protein (cell division 87.3 0.05 1.7E-06 52.4 -2.5 21 37-57 30-50 (227)
422 2p65_A Hypothetical protein PF 87.3 0.49 1.7E-05 42.7 4.4 24 34-57 43-66 (187)
423 3thx_A DNA mismatch repair pro 87.3 1.8 6E-05 50.3 9.9 19 36-54 664-682 (934)
424 1m7g_A Adenylylsulfate kinase; 87.3 0.24 8.3E-06 46.6 2.4 23 35-57 26-48 (211)
425 2xb4_A Adenylate kinase; ATP-b 87.2 0.31 1.1E-05 46.4 3.1 21 36-56 2-22 (223)
426 2vli_A Antibiotic resistance p 87.2 0.22 7.4E-06 45.4 1.9 21 35-55 6-26 (183)
427 2iw3_A Elongation factor 3A; a 87.1 0.19 6.5E-06 58.4 1.8 23 36-58 701-723 (986)
428 3tlx_A Adenylate kinase 2; str 87.1 0.69 2.4E-05 44.7 5.6 21 35-55 30-50 (243)
429 1n0w_A DNA repair protein RAD5 87.0 0.25 8.6E-06 47.2 2.3 26 36-61 26-51 (243)
430 4f4c_A Multidrug resistance pr 87.0 0.27 9.4E-06 59.5 3.1 22 36-57 446-467 (1321)
431 2dpy_A FLII, flagellum-specifi 87.0 0.24 8.2E-06 52.6 2.3 23 36-58 159-181 (438)
432 1zuh_A Shikimate kinase; alpha 86.8 0.33 1.1E-05 43.7 2.9 23 33-55 6-28 (168)
433 3g5u_A MCG1178, multidrug resi 86.7 0.3 1E-05 59.0 3.3 22 36-57 418-439 (1284)
434 2chg_A Replication factor C sm 86.7 0.63 2.1E-05 43.1 4.9 24 34-57 38-61 (226)
435 2grj_A Dephospho-COA kinase; T 86.5 0.34 1.2E-05 45.2 2.9 24 33-56 11-34 (192)
436 4f4c_A Multidrug resistance pr 86.3 0.26 8.8E-06 59.8 2.4 22 36-57 1107-1128(1321)
437 3qkt_A DNA double-strand break 86.2 0.32 1.1E-05 49.7 2.7 23 33-55 22-44 (339)
438 2dhr_A FTSH; AAA+ protein, hex 86.1 0.67 2.3E-05 49.9 5.3 49 6-57 38-87 (499)
439 4aby_A DNA repair protein RECN 86.1 0.11 3.6E-06 54.7 -1.1 25 33-57 59-83 (415)
440 3be4_A Adenylate kinase; malar 86.0 0.38 1.3E-05 45.5 3.0 21 35-55 6-26 (217)
441 1sxj_E Activator 1 40 kDa subu 86.0 0.32 1.1E-05 49.6 2.6 25 33-57 35-59 (354)
442 1ak2_A Adenylate kinase isoenz 86.0 0.41 1.4E-05 45.8 3.2 23 34-56 16-38 (233)
443 2p5t_B PEZT; postsegregational 85.9 0.25 8.7E-06 48.1 1.7 23 35-57 33-55 (253)
444 4eaq_A DTMP kinase, thymidylat 85.8 0.38 1.3E-05 46.1 2.9 23 35-57 27-49 (229)
445 3exa_A TRNA delta(2)-isopenten 85.7 0.43 1.5E-05 48.1 3.3 24 34-57 3-26 (322)
446 1e69_A Chromosome segregation 85.2 0.3 1E-05 49.4 2.0 25 33-57 23-47 (322)
447 2ius_A DNA translocase FTSK; n 85.2 0.4 1.4E-05 51.8 2.9 24 33-56 166-189 (512)
448 2o5v_A DNA replication and rep 85.1 0.31 1.1E-05 50.3 2.0 25 33-57 25-49 (359)
449 1w1w_A Structural maintenance 85.1 0.38 1.3E-05 50.8 2.7 24 35-58 27-50 (430)
450 1sxj_C Activator 1 40 kDa subu 85.0 0.57 1.9E-05 47.6 3.9 25 33-57 45-69 (340)
451 1nlf_A Regulatory protein REPA 84.9 0.34 1.2E-05 47.8 2.1 21 36-56 32-52 (279)
452 3n70_A Transport activator; si 84.9 1.2 4.1E-05 39.0 5.6 22 36-57 26-47 (145)
453 3r20_A Cytidylate kinase; stru 84.8 0.51 1.7E-05 45.5 3.2 21 35-55 10-30 (233)
454 1lv7_A FTSH; alpha/beta domain 84.5 0.39 1.3E-05 46.6 2.3 22 36-57 47-68 (257)
455 3co5_A Putative two-component 84.5 0.92 3.1E-05 39.7 4.6 22 36-57 29-50 (143)
456 1q3t_A Cytidylate kinase; nucl 84.5 0.51 1.8E-05 45.2 3.1 24 33-56 15-38 (236)
457 1uj2_A Uridine-cytidine kinase 84.3 0.48 1.7E-05 45.9 2.9 22 35-56 23-44 (252)
458 3a8t_A Adenylate isopentenyltr 84.3 0.7 2.4E-05 47.0 4.1 23 35-57 41-63 (339)
459 1ltq_A Polynucleotide kinase; 84.2 0.49 1.7E-05 47.0 2.9 21 36-56 4-24 (301)
460 2f6r_A COA synthase, bifunctio 84.0 0.6 2E-05 46.3 3.4 20 36-55 77-96 (281)
461 3bos_A Putative DNA replicatio 84.0 0.58 2E-05 44.2 3.3 24 34-57 52-75 (242)
462 3auy_A DNA double-strand break 83.9 0.46 1.6E-05 49.1 2.7 23 33-55 24-46 (371)
463 3sr0_A Adenylate kinase; phosp 83.8 0.58 2E-05 44.1 3.1 22 36-57 2-23 (206)
464 1fnn_A CDC6P, cell division co 83.5 0.51 1.7E-05 48.5 2.8 24 34-57 44-67 (389)
465 3g5u_A MCG1178, multidrug resi 82.7 0.61 2.1E-05 56.3 3.4 23 36-58 1061-1083(1284)
466 3ux8_A Excinuclease ABC, A sub 82.6 0.53 1.8E-05 52.8 2.7 20 36-55 350-369 (670)
467 2w58_A DNAI, primosome compone 82.6 0.73 2.5E-05 42.7 3.2 23 35-57 55-77 (202)
468 3cr8_A Sulfate adenylyltranfer 82.5 0.33 1.1E-05 53.1 0.8 22 36-57 371-392 (552)
469 2iw3_A Elongation factor 3A; a 82.5 0.52 1.8E-05 54.8 2.5 24 36-59 463-486 (986)
470 3umf_A Adenylate kinase; rossm 82.4 0.72 2.5E-05 43.9 3.1 24 33-56 27-51 (217)
471 1p5z_B DCK, deoxycytidine kina 82.2 0.64 2.2E-05 45.3 2.8 25 33-57 23-47 (263)
472 1tue_A Replication protein E1; 81.6 0.68 2.3E-05 43.7 2.6 21 36-56 60-80 (212)
473 2qmh_A HPR kinase/phosphorylas 81.6 0.76 2.6E-05 43.1 2.9 24 34-57 34-57 (205)
474 1d2n_A N-ethylmaleimide-sensit 81.4 1.3 4.4E-05 43.3 4.7 24 34-57 64-87 (272)
475 4ag6_A VIRB4 ATPase, type IV s 80.8 0.78 2.7E-05 47.6 3.0 26 33-58 34-59 (392)
476 1njg_A DNA polymerase III subu 80.5 0.93 3.2E-05 42.5 3.2 22 35-56 46-67 (250)
477 3zvl_A Bifunctional polynucleo 80.5 0.79 2.7E-05 48.2 2.9 22 35-56 259-280 (416)
478 3d3q_A TRNA delta(2)-isopenten 80.5 0.81 2.8E-05 46.6 2.9 23 35-57 8-30 (340)
479 1pzn_A RAD51, DNA repair and r 80.3 0.65 2.2E-05 47.6 2.1 23 36-58 133-155 (349)
480 1sxj_D Activator 1 41 kDa subu 80.3 1.2 4.2E-05 44.9 4.3 24 34-57 58-81 (353)
481 2iut_A DNA translocase FTSK; n 80.3 0.82 2.8E-05 49.8 3.0 24 33-56 213-236 (574)
482 2ocp_A DGK, deoxyguanosine kin 80.2 0.81 2.8E-05 43.9 2.7 22 36-57 4-25 (241)
483 1a7j_A Phosphoribulokinase; tr 80.0 0.52 1.8E-05 47.0 1.2 23 34-56 5-27 (290)
484 3h4m_A Proteasome-activating n 80.0 1.6 5.5E-05 42.7 4.9 24 34-57 51-74 (285)
485 3thx_B DNA mismatch repair pro 79.9 1.9 6.6E-05 49.8 6.1 22 36-57 675-696 (918)
486 2ce7_A Cell division protein F 79.6 1.5 5.1E-05 46.9 4.7 22 36-57 51-72 (476)
487 2dr3_A UPF0273 protein PH0284; 79.4 0.88 3E-05 43.3 2.7 21 36-56 25-45 (247)
488 3t15_A Ribulose bisphosphate c 79.1 1.1 3.6E-05 44.7 3.2 24 33-56 34-58 (293)
489 3crm_A TRNA delta(2)-isopenten 78.9 0.96 3.3E-05 45.8 2.8 22 35-56 6-27 (323)
490 3pfi_A Holliday junction ATP-d 78.6 2.2 7.6E-05 42.9 5.5 25 33-57 54-78 (338)
491 3b9p_A CG5977-PA, isoform A; A 78.3 0.86 2.9E-05 45.1 2.3 24 34-57 54-77 (297)
492 1tf7_A KAIC; homohexamer, hexa 78.1 0.8 2.7E-05 49.7 2.1 22 36-57 41-64 (525)
493 4fcw_A Chaperone protein CLPB; 78.1 1.9 6.5E-05 42.7 4.8 22 36-57 49-70 (311)
494 3foz_A TRNA delta(2)-isopenten 78.1 1.1 3.6E-05 45.1 2.8 22 35-56 11-32 (316)
495 2h92_A Cytidylate kinase; ross 77.9 1.1 3.9E-05 41.9 2.9 22 35-56 4-25 (219)
496 4edh_A DTMP kinase, thymidylat 77.7 1.2 4.1E-05 42.2 2.9 22 35-56 7-28 (213)
497 1bif_A 6-phosphofructo-2-kinas 77.7 1.1 3.7E-05 47.9 2.9 22 36-57 41-62 (469)
498 2qby_A CDC6 homolog 1, cell di 77.2 0.9 3.1E-05 46.3 2.1 24 34-57 45-68 (386)
499 1c9k_A COBU, adenosylcobinamid 77.1 1.2 4.1E-05 41.0 2.7 21 37-57 2-22 (180)
500 2r62_A Cell division protease 77.1 1.5 5E-05 42.6 3.5 21 37-57 47-67 (268)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=6.1e-92 Score=791.20 Aligned_cols=587 Identities=39% Similarity=0.648 Sum_probs=509.1
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
|++|++++|+|||.++++|... ++++|+|+|||.+|||||||+|+|+|.++||++.++|||+|+++++.+.+
T Consensus 26 ~~~li~~inkl~d~l~~lg~~~--------~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~ 97 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 97 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCCG--------GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCccc--------cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC
Confidence 7899999999999999999642 25899999999999999999999999999999999999999999998866
Q ss_pred CCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHH
Q 007422 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~ 160 (604)
.+|+.+.+.++..+.++++++.++..+++...|.+++++.+++.+++++|+.++++||||||+...+..+||.++..
T Consensus 98 ---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~ 174 (772)
T 3zvr_A 98 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 174 (772)
T ss_dssp ---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHH
T ss_pred ---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999888888988888
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
.+..++..|+.....+|++|++++.++..++.+.+++ .|+|+|+||+|+++++....+++.+...++++||..|
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence 9999999999865556666778887777666544433 7999999999999887766677666666778899999
Q ss_pred EeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhc
Q 007422 235 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 314 (604)
Q Consensus 235 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 314 (604)
.++|+.+......+.++...|..||..+|+|..+.+++|+..|++.|++.|..|++++||+++.+|+.++..++.+++++
T Consensus 255 V~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~ 334 (772)
T 3zvr_A 255 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334 (772)
T ss_dssp CCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHh
Confidence 99998776666777788888899999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHhHHhhhHHHHHhcccccccCchHHHHHHHHH
Q 007422 315 GKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR--------PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITE 386 (604)
Q Consensus 315 g~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 386 (604)
|.+++.++..+..++++++++|++.|.++++|.+ .||++|+++|++.|+..+.++++++.+++++|+++|+|
T Consensus 335 ~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n 414 (772)
T 3zvr_A 335 KNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKN 414 (772)
T ss_dssp HHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHh
Confidence 9888877777777899999999999999999998 58999999999999999999999999999999999999
Q ss_pred hccCCCCCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHH
Q 007422 387 ADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTS 466 (604)
Q Consensus 387 ~~g~~p~~f~pe~~f~~li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~~~~~l~~~~~~a 466 (604)
++|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|+++|.+++.+.|++++.+|
T Consensus 415 ~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t 491 (772)
T 3zvr_A 415 IHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRT 491 (772)
T ss_dssp CC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 4799999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccc---ccccC--c-------------cc----c-c------------cCCCC------------
Q 007422 467 KKATLQLVDMECSYLTVD---FFRKL--P-------------QD----V-D------------KGGNP------------ 499 (604)
Q Consensus 467 ~~~i~~li~~E~~y~~~~---~~~~~--~-------------~~----~-~------------~~~~~------------ 499 (604)
+++|.+||+||++||||+ |.+.. . .+ + . ++|+.
T Consensus 492 ~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (772)
T 3zvr_A 492 KEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLS 571 (772)
T ss_dssp HHHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEE
T ss_pred HHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccc
Confidence 999999999999999994 43210 0 00 0 0 00000
Q ss_pred ----------------------------------------CCCC------------------------------C-C---
Q 007422 500 ----------------------------------------THSI------------------------------F-D--- 505 (604)
Q Consensus 500 ----------------------------------------~~~~------------------------------~-~--- 505 (604)
...+ . +
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (772)
T 3zvr_A 572 WYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVG 651 (772)
T ss_dssp EESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC---
T ss_pred cccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcccc
Confidence 0000 0 0
Q ss_pred ------C------------CchH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007422 506 ------R------------YNDS---YLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQK 564 (604)
Q Consensus 506 ------~------------~~~~---~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~ 564 (604)
. +.+. .++.|+.+|+|||.||+|++.|.|||+|||||||.+++.++.+|+..||..+.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~- 730 (772)
T 3zvr_A 652 DKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGD- 730 (772)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCC-
T ss_pred ccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-
Confidence 0 0011 25678999999999999999999999999999999999999999999999874
Q ss_pred hhhhhhCCChHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007422 565 RLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWS 603 (604)
Q Consensus 565 ~~~~lL~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~~~ 603 (604)
+..||.|+|++++||++|.+++++|++|..+|.+|.++
T Consensus 731 -~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 731 -QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTT 768 (772)
T ss_dssp -TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999864
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=8.5e-83 Score=714.86 Aligned_cols=559 Identities=27% Similarity=0.391 Sum_probs=472.8
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeec
Q 007422 11 IQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFL 90 (604)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~ 90 (604)
+.|.+..+|.. . .+++|+|+|||++|||||||+++|+|. ..|+++|.||++|+.+.+.+.+....+...+.
T Consensus 30 ~id~l~~~gv~---~-----~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~ 100 (608)
T 3szr_A 30 LIDSLRALGVE---Q-----DLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVS 100 (608)
T ss_dssp HHHHHHHHSCC---S-----SCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEES
T ss_pred HHHHHHhCCCC---C-----cccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEe
Confidence 34456666643 1 258999999999999999999999998 46989999999999998877654333333322
Q ss_pred cCC-CCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHh
Q 007422 91 HIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSY 169 (604)
Q Consensus 91 ~~~-~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~ 169 (604)
..+ ...+.++..+...+........+.+.+++...+.+.+.++..|+++|+|+||+...++.+++......+.+++..|
T Consensus 101 ~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 101 YQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp CC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred eecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 222 3456677888888877777777788899999999999999999999999999999988899999999999999999
Q ss_pred hcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhh
Q 007422 170 IEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQAD 241 (604)
Q Consensus 170 i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~ 241 (604)
+.+..++++++++++.|.++++++++++ .++|+|+||+|++++++. +.+++.|...++++||++|+|+++++
T Consensus 181 l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~ 260 (608)
T 3szr_A 181 IQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQE 260 (608)
T ss_dssp TTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTC
T ss_pred HhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhh
Confidence 9999999999999999999998888876 799999999999988763 56778888999999999999999999
Q ss_pred hhccccHHHHHHHHHHHhccCCCCchhhh--ccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007422 242 INKNVDMIAARRREREYFSTTPEYKHLAQ--RMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIA 319 (604)
Q Consensus 242 i~~~~~~~~~~~~e~~ff~~~~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~ 319 (604)
++...++.++...|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.++++||.+||.+++
T Consensus 261 ~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~ 340 (608)
T 3szr_A 261 IQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIP 340 (608)
T ss_dssp TTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred cccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999998764 8999999999999999999999999999999999999999999999988
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHhHHhhhHHHHHhcccc----cccCchHHHHHHHHHhccCCC
Q 007422 320 ADAGGKLYTIMEICRLFDQIYKEHLDGVRPGG---DKIYYVFDNQLPAALKRLQF----DKQLSMENIRKLITEADGYQP 392 (604)
Q Consensus 320 ~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~~~---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~v~~~i~~~~g~~p 392 (604)
.++..++.+|++++++|++.++++++|.+..+ .+++..+++.|..+...+.. ......++|++.+++++|.++
T Consensus 341 ~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 420 (608)
T 3szr_A 341 EDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAEL 420 (608)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCC
Confidence 88888888999999999999999999997533 57777777777766654421 122346789999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007422 393 HLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQ 472 (604)
Q Consensus 393 ~~f~pe~~f~~li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~~~~~l~~~~~~a~~~i~~ 472 (604)
++|+|+.+|+.+|++||++|++|+.+|++.|++.+..++.++.. .+|.|||+|++++.+++.++++++.++|+++|++
T Consensus 421 ~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~ 498 (608)
T 3szr_A 421 PGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRL 498 (608)
T ss_dssp SCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765 5899999999999999999999999999999999
Q ss_pred HHHHHcccccccc-cccCccccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007422 473 LVDMECSYLTVDF-FRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLL 551 (604)
Q Consensus 473 li~~E~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~ 551 (604)
+|+||+.||++|. |.. ....+.+|+.+|+|||+||+||++|+|||+|+||||+.+++.||
T Consensus 499 li~mE~~~~~~d~~~~~-------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq 559 (608)
T 3szr_A 499 HFQMEQIVYGAFQSSSA-------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQ 559 (608)
T ss_dssp HHHHHHHCCCC----------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHhhccccCCccccC-------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999998863 321 01123579999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007422 552 DHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVA 601 (604)
Q Consensus 552 ~~L~~~L~~~~~~~~~~lL~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~ 601 (604)
.+|++.||+.+. +++||+|||++++||+.|++++++|++|+++|.+|.
T Consensus 560 ~~l~~~l~~~~~--~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 560 KAMLQLLQDKDT--YSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHHTTTTCHHH--HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcchh--HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998765 999999999999999999999999999999999873
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=4.2e-50 Score=424.27 Aligned_cols=325 Identities=89% Similarity=1.306 Sum_probs=289.1
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
||.|++++|+||++++.+|+.+....++.++.++|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++.+.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999998765567888888999999999999999999999999999999999999999999999998
Q ss_pred CCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHH
Q 007422 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~ 160 (604)
....+++.|.+.++..+.++..+..++..++....|.+.+++.+++.+++.+|..++++||||||+.+....+|+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
.+..++..|++++|++|+++++++.+..+++++.+++ .|+|+|+||+|++++++...+.+.+....+++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 9999999999999999999999988888887776665 6999999999999888777888888888899999999
Q ss_pred EeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhc
Q 007422 235 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 314 (604)
Q Consensus 235 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 314 (604)
+++++.++++..+..++...|..||.++++|+.+.+++|+++|+++|+++|.+||+++||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhh
Q 007422 315 GKPIAADAGGK 325 (604)
Q Consensus 315 g~~~~~~~~~~ 325 (604)
|++++.++.++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99998766544
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.1e-44 Score=381.71 Aligned_cols=332 Identities=51% Similarity=0.810 Sum_probs=297.6
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
|+.|++++|+|||.+..+|... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~--------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~ 77 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT 77 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGG--------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC
Confidence 8999999999999999998631 24789999999999999999999999999999999999999999998765
Q ss_pred CCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHH
Q 007422 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~ 160 (604)
.+|+.|.+.++..++++..+..++..++.++.|.+.+++..++.+++.+|+..+++||||||+.+.+..+|+.++.+
T Consensus 78 ---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~ 154 (353)
T 2x2e_A 78 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 154 (353)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHH
T ss_pred ---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHH
Confidence 47889999999999999999999999888888888899999999999999989999999999999888888888888
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
.+..++..|+..++.+|++|++++.++.+++++.+++ .|+++|+||+|+++++.++.+++.+...++++||+.+
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 9999999999999999999999988888887654544 7999999999999877666677777777788899999
Q ss_pred EeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhc
Q 007422 235 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 314 (604)
Q Consensus 235 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 314 (604)
.++|+.+.....++.++...|.+||+.++.|+....++|+..|.+.|++.|..|++++||+++.+++..+..++.++.++
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~ 314 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEY 314 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998777666677777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhH--HHHHHHHHHHHHHHHHh
Q 007422 315 GKPIAADAGGKL--YTIMEICRLFDQIYKEH 343 (604)
Q Consensus 315 g~~~~~~~~~~~--~~l~~~~~~f~~~~~~~ 343 (604)
+...+.++..+. .++++++++|++.|...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 315 KNFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HHHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 887776654444 78999999999988654
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=321.18 Aligned_cols=251 Identities=13% Similarity=0.177 Sum_probs=191.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcCCC---CCCchhHhHHhhhHHHHHhcccccccCc----hHHHHHHHHHhccCCCCC
Q 007422 322 AGGKLYTIMEICRLFDQIYKEHLDGVR---PGGDKIYYVFDNQLPAALKRLQFDKQLS----MENIRKLITEADGYQPHL 394 (604)
Q Consensus 322 ~~~~~~~l~~~~~~f~~~~~~~i~g~~---~~~~~i~~~f~~~~~~~~~~~~~~~~~~----~~~v~~~i~~~~g~~p~~ 394 (604)
+..++.||++.++.|++.+.+++.|.. .|+.|++..+++.|.+|...++...... .++|....++++|.+++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 456788999999999999999999986 3567999999999999987665221111 256777778999999999
Q ss_pred CCchHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007422 395 IAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLV 474 (604)
Q Consensus 395 f~pe~~f~~li~~~i~~l~~P~~~cv~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~~~~~l~~~~~~a~~~i~~li 474 (604)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. .+|++||+|++.+.+++.+++.+|..+|+++|+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988775 599999999999999999999999999999999999
Q ss_pred HHHccccccc-ccccCcccc-cc--CC---CCCCC---CCCCCch-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007422 475 DMECSYLTVD-FFRKLPQDV-DK--GG---NPTHS---IFDRYND-SYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQV 543 (604)
Q Consensus 475 ~~E~~y~~~~-~~~~~~~~~-~~--~~---~~~~~---~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv 543 (604)
+||+.+||+| .|....+.+ ++ .. .+..+ ....... +.+.+|+.||.|||+||++|++|+|||+|+||||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll 240 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFML 240 (271)
T ss_dssp HHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999888876 343221111 00 00 00000 0011122 4578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhhhhCCChHH
Q 007422 544 REAKRSLLDHFFTELGKLEQKRLSNLLNEDPAV 576 (604)
Q Consensus 544 ~~~~~~l~~~L~~~L~~~~~~~~~~lL~E~~~i 576 (604)
+.+++.||.+|++.||+++. +++||+|||++
T Consensus 241 ~~~~~~lQ~~ml~~l~~~~~--~~~LL~E~~d~ 271 (271)
T 3ljb_A 241 QTYGQQLQKAMLQLLQDKDT--YSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHTTSCGGG--HHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHhchhh--HHHHhcCCCCC
Confidence 99999999999999999875 99999999985
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=3.3e-38 Score=326.83 Aligned_cols=304 Identities=52% Similarity=0.794 Sum_probs=234.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCC
Q 007422 2 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE 81 (604)
Q Consensus 2 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~ 81 (604)
|.|++++|+||++++.+|.. ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~---------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~ 71 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD---------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC---------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCC
T ss_pred CchHHHHHHHHHHHHHcCCC---------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCC
Confidence 57999999999999988853 247999999999999999999999999999999999999999999888643
Q ss_pred -----CCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCc
Q 007422 82 -----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 156 (604)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~ 156 (604)
....|+++.+.++..+.++.++..++..++.+..|.+.+++.+++.+++.+|+..+++||||||+.+.+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~ 151 (315)
T 1jwy_B 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPT 151 (315)
T ss_dssp CTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------
T ss_pred cccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCch
Confidence 356889999999999999999999999998888888889999999999999999999999999998766556667
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH---HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCC
Q 007422 157 SIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 230 (604)
Q Consensus 157 ~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~---~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g 230 (604)
.....+..++..|++.+|++|+++++++.+....+ .+... ..|+++|+||+|+.++.....+.+.+....++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCC
Confidence 77888899999999999999999988776655433 23332 2899999999999987665566666544556689
Q ss_pred EEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 007422 231 WIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENE 310 (604)
Q Consensus 231 ~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~e 310 (604)
|+.+++.|+.+++.+....+....+..||..+++|..+..+.|+..|...|++.+..++++++|++..+++..+.+++++
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~ 311 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998887788777778888899888888877788999999999999999999999999999999999999999
Q ss_pred HHhc
Q 007422 311 LSRL 314 (604)
Q Consensus 311 L~~l 314 (604)
|.+|
T Consensus 312 l~~~ 315 (315)
T 1jwy_B 312 LSTY 315 (315)
T ss_dssp ----
T ss_pred HHhC
Confidence 8764
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=9.7e-36 Score=305.79 Aligned_cols=292 Identities=57% Similarity=0.899 Sum_probs=247.4
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecC
Q 007422 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (604)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (604)
|++|++++++|++.++.+|... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+.+++.+.+
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~ 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT--------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC
Confidence 8999999999999999988631 24789999999999999999999999999999999999999999988765
Q ss_pred CCCcceeeeccCCCCccCChHHHHHHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHH
Q 007422 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~ 160 (604)
.+|..+.+..+..++++..+...+...+..+.|.+.+++...+.+++.+|+..+++||||||+......++++++..
T Consensus 73 ---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~ 149 (299)
T 2aka_B 73 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 149 (299)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHH
T ss_pred ---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHH
Confidence 47888888888889999999988888877888888899999999999999888999999999988766566777777
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEE
Q 007422 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 234 (604)
Q Consensus 161 ~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 234 (604)
.+..++..|++.++.+|++|.+++.+...++.+.+++ .|+++|+||+|+.+++....+.+.+....++.||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 8899999999999999877778887777766543333 7999999999999876555566665545566688877
Q ss_pred EeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007422 235 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKT 303 (604)
Q Consensus 235 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~ 303 (604)
.+.|+........+......|.+||+.++.|+....++|+..|.+.|++.+..|+++++|++..+++.+
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 777765444444555566679999999999999888999999999999999999999999999999865
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=2.2e-17 Score=187.52 Aligned_cols=166 Identities=16% Similarity=0.247 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHH---H
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQ---D 109 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~---~ 109 (604)
+.++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+.... .....+.........++..+...+. .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~---~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEK---KVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSC---EEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCC---eEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 567899999999999999999999999999999999999999864211 1111121111111112222211100 0
Q ss_pred hhhhhcCCCCcccCccEEEEEecCCC---CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc
Q 007422 110 ETDRETGRTKQISSVPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (604)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~---~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d 186 (604)
........+.........++++.|.. .+++||||||+..... ....+..|++.+|++|+|+++.+ .
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vvda~~-~ 213 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVMRASQ-P 213 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEEETTS-T
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEEeCCC-c
Confidence 01111222233344556667776653 4799999999976432 25678899999999988776543 3
Q ss_pred chhhH--HH-Hhhh---cceeEEEecccCCCC
Q 007422 187 LATSD--AI-KISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 187 ~~~~~--~l-~l~~---~r~i~VltK~D~~~~ 212 (604)
....+ .+ .... .|+++|+||+|+.+.
T Consensus 214 ~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred cchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 33222 22 2222 689999999999754
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=8.7e-18 Score=172.97 Aligned_cols=237 Identities=14% Similarity=0.190 Sum_probs=154.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....|+++|.+|||||||+|+|+|.++...+.. .+|+......
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~------------------------------------ 52 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGV------------------------------------ 52 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEE------------------------------------
Confidence 556899999999999999999999987433322 2333321111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
.......+++||||||+.+... .....+.+...+..+++.+|++++|+++.+.. ....
T Consensus 53 ------------------~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~ 111 (308)
T 3iev_A 53 ------------------KNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE 111 (308)
T ss_dssp ------------------EEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHH
T ss_pred ------------------EecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhH
Confidence 1111133789999999986431 13366777888899999999999988765532 2222
Q ss_pred HH-HHhhh---cceeEEEecccCCCCCCCHHHHHhCCcccc--CCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCC
Q 007422 191 DA-IKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRL--KFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPE 264 (604)
Q Consensus 191 ~~-l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~ 264 (604)
.. +...+ .|+++|+||+|+.+........+......+ ...++.+++.++.++++++..+.....+.++++..+.
T Consensus 112 ~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~ 191 (308)
T 3iev_A 112 EIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDM 191 (308)
T ss_dssp HHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTC
T ss_pred HHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCccc
Confidence 22 33333 899999999999843333322222111122 2568999999999999888887776666555544333
Q ss_pred CchhhhccChHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH--HHHHhcCCCCCCChhhhHHHHH
Q 007422 265 YKHLAQRMGSEH-LAKMLSKHLETVIKSRIPGIQSLISKTVLELE--NELSRLGKPIAADAGGKLYTIM 330 (604)
Q Consensus 265 ~~~~~~~~g~~~-L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~--~eL~~lg~~~~~~~~~~~~~l~ 330 (604)
.++ ..... ..+.+++.+..++++++|+......+.+.+.. +....+.+.+.+++++++.+++
T Consensus 192 ~td----~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~i 256 (308)
T 3iev_A 192 ITD----LPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIII 256 (308)
T ss_dssp CBC----CCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHH
T ss_pred ccC----CCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEE
Confidence 333 23333 45889999999999999998776655554322 1233455556677777777654
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=6.5e-18 Score=173.14 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=146.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..+.|++||.+|+|||||+|+|+|.++.+.+.. .+||.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~------------------------------------- 48 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG------------------------------------- 48 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE-------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE-------------------------------------
Confidence 457899999999999999999999987433322 133322111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
+...+..+++||||||+.+.. ..+.+.+...+..|++.+|++++|++..+.. ....
T Consensus 49 ------------------i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~ 105 (301)
T 1wf3_A 49 ------------------ILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDE 105 (301)
T ss_dssp ------------------EEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHH
T ss_pred ------------------EEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHH
Confidence 111123378999999997642 2355667788899999999999988765432 1122
Q ss_pred HHHHh---h--hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCC
Q 007422 191 DAIKI---S--RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEY 265 (604)
Q Consensus 191 ~~l~l---~--~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~ 265 (604)
..+.. . ..|+++|+||+|+.+......+.+... .....++.+++.++.++++++..+.....+.++++....+
T Consensus 106 ~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~ 183 (301)
T 1wf3_A 106 LVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYA 183 (301)
T ss_dssp HHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCC
T ss_pred HHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccc
Confidence 22222 2 378999999999976432122222211 1113478888888899988888776655555555543333
Q ss_pred -chhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHHHH
Q 007422 266 -KHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIM 330 (604)
Q Consensus 266 -~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~ 330 (604)
++.+.+. ...+.+++.+.+.+++++|+......+.+.+.++....+...+.++++++..+++
T Consensus 184 ~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iii 246 (301)
T 1wf3_A 184 KSDQTFGE---WVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVI 246 (301)
T ss_dssp SBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCHHH---HHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEE
Confidence 3322221 3568889999999999999988776555543222222233345566777766554
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=8.3e-17 Score=165.06 Aligned_cols=233 Identities=15% Similarity=0.207 Sum_probs=134.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..+.|++||.+|||||||+|+|+|..+.+.+..+ +||....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~-------------------------------------- 48 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV-------------------------------------- 48 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE--------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEE--------------------------------------
Confidence 4568999999999999999999998763322211 2222110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCc-cccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~-~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
| +...+..+++++||||+. .... .....+...+..+++.+|+++++++..+ +...
T Consensus 49 ----g-------------i~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~ 104 (301)
T 1ega_A 49 ----G-------------IHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVVEGTR--WTPD 104 (301)
T ss_dssp ----E-------------EEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEEETTC--CCHH
T ss_pred ----E-------------EEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCHH
Confidence 0 111122368999999986 3210 0222223334667889999988876644 3322
Q ss_pred --HHHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHHHHHHHhccCCC
Q 007422 191 --DAIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRREREYFSTTPE 264 (604)
Q Consensus 191 --~~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~ 264 (604)
..++.. ..|.++|+||+|+........+.+......++. .++.+++..+.+++++.+.+....++.++++....
T Consensus 105 ~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~ 184 (301)
T 1ega_A 105 DEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDY 184 (301)
T ss_dssp HHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTC
T ss_pred HHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccc
Confidence 222222 389999999999876222222322211111222 36778887788888877776655555555544333
Q ss_pred CchhhhccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhHHHHH
Q 007422 265 YKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIM 330 (604)
Q Consensus 265 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~ 330 (604)
.++.+.+ ....+.+++.+.+.+.+++|+....+.+.+.+.+...-++...+.+++++++.+++
T Consensus 185 ~~d~~~~---~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~i 247 (301)
T 1ega_A 185 ITDRSQR---FMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVI 247 (301)
T ss_dssp CSCCSHH---HHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEE
Confidence 3332211 13457889999999999999876655443322111111222334455566665554
No 12
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=5.7e-14 Score=138.86 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
..++|+|||.+|+|||||+|+|+|..+.+.+.. .+|+.+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~---------------------------------- 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS---------------------------------- 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE----------------------------------
Confidence 567999999999999999999999987544432 34443322210
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
.+ +...++||||||+...... +......+...+..+.+.+|++|+|+.....+....
T Consensus 74 ------------------~~---~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 74 ------------------SW---KETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp ------------------EE---TTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred ------------------Ee---CCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 01 1126889999999865432 223455666777777788999999876544333333
Q ss_pred HHHHhhh--------cceeEEEecccCCCCC
Q 007422 191 DAIKISR--------ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 ~~l~l~~--------~r~i~VltK~D~~~~~ 213 (604)
.++.... .++++|+||+|+.+..
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 3332221 5899999999998653
No 13
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.52 E-value=2.6e-14 Score=139.14 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=100.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCC-ccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFL-PRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~l-P~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (604)
...|+|+|+|.+|+|||||+|+|+|.+.+ ..+.. .+|+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~------------------------------------ 70 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY------------------------------------ 70 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE------------------------------------
Confidence 36789999999999999999999998732 22111 12222211
Q ss_pred hhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC---CCeEEEEEecCCC-
Q 007422 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQ- 185 (604)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~---~d~iIl~v~~a~~- 185 (604)
..+.......++||||||+..... +....+.+..++..|++. +|++|++++..+.
T Consensus 71 ------------------~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 129 (223)
T 4dhe_A 71 ------------------FSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129 (223)
T ss_dssp ------------------EEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred ------------------EEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC
Confidence 112222334799999999865432 233456667788888877 5668777765442
Q ss_pred cchhhHHHHhhh---cceeEEEecccCCCCCCC--HHHHHhCCcc-------ccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 186 DLATSDAIKISR---ERTFGVLTKIDLMDKGTD--AADILEGKSY-------RLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 186 d~~~~~~l~l~~---~r~i~VltK~D~~~~~~~--~~~~l~~~~~-------~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.......+.... .|+++|+||+|+.+.... ..+.+..... .....++.+++.++.++++++..+....
T Consensus 130 ~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp CHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 112223333332 899999999999864321 1111111100 1334688899988888888777665443
No 14
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=2.9e-14 Score=142.80 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
..++|+|+|.+|||||||+|+|+|...++.+..+ +|+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 65 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------------------------- 65 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-----------------------------------
Confidence 5679999999999999999999998865554332 333321111
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
+.. +..++.||||||+.+.... .......+...+..+++.+|++|+|++.........
T Consensus 66 -------------------~~~-~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (260)
T 2xtp_A 66 -------------------GSW-GNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQ 123 (260)
T ss_dssp -------------------EEE-TTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHH
T ss_pred -------------------EEe-CCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 001 1226899999999865432 222333445566678899999999887664222222
Q ss_pred HHHHhh--------hcceeEEEe-cccCCCCCCCHHHHHhC--------CccccCCC---E--EEEEeCChhhhhccccH
Q 007422 191 DAIKIS--------RERTFGVLT-KIDLMDKGTDAADILEG--------KSYRLKFP---W--IGVVNRSQADINKNVDM 248 (604)
Q Consensus 191 ~~l~l~--------~~r~i~Vlt-K~D~~~~~~~~~~~l~~--------~~~~l~~g---~--~~v~~~s~~~i~~~~~~ 248 (604)
..+... ..+.++|+| |+|+.+. .....+.. ....++.. | +.+++..+.++++++..
T Consensus 124 ~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~ 201 (260)
T 2xtp_A 124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDC 201 (260)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHH
Confidence 222222 257888888 9999743 22221110 00111111 2 45566667788888888
Q ss_pred HHHHHHHHH
Q 007422 249 IAARRRERE 257 (604)
Q Consensus 249 ~~~~~~e~~ 257 (604)
+.....+..
T Consensus 202 i~~~~~~~~ 210 (260)
T 2xtp_A 202 IEDLLMEKN 210 (260)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 777766654
No 15
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.51 E-value=5.1e-14 Score=155.59 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCC--cccccccccccEEEEEEecCCCCcceeeeccCCCCcc-CChHHHHHHHH
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFL--PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRF-TDFAAVRKEIQ 108 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~l--P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~i~ 108 (604)
...|.|+|+|.+|+|||||+|+|+|.++. +.+..++|.+.+.+.... . .... ++..+ .+.. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~--~-----~~i~--~g~~l~~~~~---~--- 127 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGE--T-----EGTV--PGNALVVDPE---K--- 127 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCS--S-----SEEE--CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECC--c-----cccc--CCceeeecCc---c---
Confidence 36799999999999999999999999874 566667775555444211 0 0000 00000 0000 0
Q ss_pred HhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHH--HHHHHHHhhcCCCeEEEEEecCCCc
Q 007422 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQD--IENMVRSYIEKPNCIILAISPANQD 186 (604)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~--i~~~~~~~i~~~d~iIl~v~~a~~d 186 (604)
....+...+..+...++++.+.++...+++||||||+...... .+... +..++..++..+|++|+|+++.+.+
T Consensus 128 -~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~ 202 (550)
T 2qpt_A 128 -PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLE 202 (550)
T ss_dssp -----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCC
T ss_pred -cHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC
Confidence 0000111122334444555544433347999999999763211 01111 3567788999999999988776543
Q ss_pred chh--hHHHHhhh---cceeEEEecccCCCC
Q 007422 187 LAT--SDAIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 187 ~~~--~~~l~l~~---~r~i~VltK~D~~~~ 212 (604)
... ..++...+ .++++|+||+|++++
T Consensus 203 ~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 203 ISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp CCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 332 23343333 789999999999864
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.51 E-value=1.1e-14 Score=145.62 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
|+|+++|.+|+|||||+|+|+|..+ ..+.- .+|.-..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~----------------------------------------- 39 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKK----------------------------------------- 39 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEE-----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEE-----------------------------------------
Confidence 7999999999999999999999864 22221 1121110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~~~ 191 (604)
.-.+... ...+.||||||+.+....++.... -+.+...|+ .++|++|+|++..+.+. ...
T Consensus 40 -------------~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~vi~VvDas~~~~-~~~ 101 (256)
T 3iby_A 40 -------------TGEFLLG-EHLIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYDCIINVIDACHLER-HLY 101 (256)
T ss_dssp -------------EEEEEET-TEEEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCSEEEEEEEGGGHHH-HHH
T ss_pred -------------EEEEEEC-CeEEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCCEEEEEeeCCCchh-HHH
Confidence 0011111 126899999999776432111112 244667788 89999999887665221 111
Q ss_pred HHHh---hhcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 192 AIKI---SRERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 192 ~l~l---~~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.... ...|+++|+||+|+.+... +...+ ...++.+++.++++++.++++++..+..
T Consensus 102 l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 102 LTSQLFELGKPVVVALNMMDIAEHRGISIDTEKL----ESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp HHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHH----HHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHH----HHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 1111 2289999999999875432 11121 1234568999999999988887766543
No 17
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=1.1e-13 Score=137.60 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc--cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
...+|++||.+|+|||||+|+|+|..+...+... +|+.+.....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~---------------------------------- 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR---------------------------------- 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE----------------------------------
Confidence 4568999999999999999999999876554332 4544422221
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~ 190 (604)
.. +...++||||||+.+..... .+.....+......+.+.+|++|+|++..+......
T Consensus 66 --------------------~~-~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (247)
T 3lxw_A 66 --------------------RW-DKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123 (247)
T ss_dssp --------------------EE-TTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH
T ss_pred --------------------EE-CCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH
Confidence 11 12268999999997543210 011222233333344589999999887654222222
Q ss_pred HHHHhh---------hcceeEEEecccCCCCCCCHHHHHh--------CCccccCCCEEEEEeCC-----hhhhhccccH
Q 007422 191 DAIKIS---------RERTFGVLTKIDLMDKGTDAADILE--------GKSYRLKFPWIGVVNRS-----QADINKNVDM 248 (604)
Q Consensus 191 ~~l~l~---------~~r~i~VltK~D~~~~~~~~~~~l~--------~~~~~l~~g~~~v~~~s-----~~~i~~~~~~ 248 (604)
..+... +.++|+|.||.|+.+. ...+.+. .....++..|+.+.+.. +.++.+++..
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~ 201 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGM 201 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCCC--CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHH
Confidence 222222 2688999999998653 2322221 11123344577666654 3677777777
Q ss_pred HHHHHHH
Q 007422 249 IAARRRE 255 (604)
Q Consensus 249 ~~~~~~e 255 (604)
+.....+
T Consensus 202 i~~~~~~ 208 (247)
T 3lxw_A 202 VEGLVLE 208 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 18
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.48 E-value=1.2e-13 Score=131.30 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc--ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
..++|+|+|.+|+|||||+|+|+|..+.+.... .+|+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 62 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--------------------------------------- 62 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE---------------------------------------
Confidence 678999999999999999999999875322111 011110
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCCc-
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQD- 186 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~---d~iIl~v~~a~~d- 186 (604)
....+ ...+.+|||||+..... +.........++..|++.+ |++++|++..+..
T Consensus 63 ---------------~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 120 (195)
T 1svi_A 63 ---------------NFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS 120 (195)
T ss_dssp ---------------EEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred ---------------EEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC
Confidence 01111 12689999999765422 2333556677788888877 8888877654432
Q ss_pred chhhHHHHhh---hcceeEEEecccCCCCCCCH--HHHHhC-CccccCCCEEEEEeCChhhhhccccHHH
Q 007422 187 LATSDAIKIS---RERTFGVLTKIDLMDKGTDA--ADILEG-KSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 187 ~~~~~~l~l~---~~r~i~VltK~D~~~~~~~~--~~~l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
......+... ..|+++|+||+|+.+..... .+.+.. ........|+.+++.++.++++++..+.
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHH
Confidence 1122222332 38999999999998754311 111110 1112235688888888888877666554
No 19
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.48 E-value=1e-13 Score=127.60 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhH----HHHhh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD----AIKIS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~----~l~l~---~~r~i~VltK~ 207 (604)
.+.|+||||.... ..+...|++.+|+++++++..+... . ... .+... ..|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1kao_A 52 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 4889999996543 5567788999999999886654321 1 111 12221 27899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+................+..|+.+++.++.++++++..+...
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp GGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 987543211111111111234579999999999888877765543
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.48 E-value=9.1e-14 Score=127.50 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.|+|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK---------------------------------------- 40 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecce----------------------------------------
Confidence 37899999999999999999998875212111 1111110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~ 191 (604)
...+...+ ..+.+|||||...... ........+..+++.+|++|++++..+... ....
T Consensus 41 --------------~~~~~~~~-~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 99 (161)
T 2dyk_A 41 --------------EGVVETDR-GRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYE 99 (161)
T ss_dssp --------------EEEEEETT-EEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHH
T ss_pred --------------EEEEEeCC-ceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHH
Confidence 01111111 2688999999876321 334556777889999999999887655321 1122
Q ss_pred HHHh---hhcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHH
Q 007422 192 AIKI---SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 192 ~l~l---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 249 (604)
.... ...|+++|+||+|+.+......++. .++. .|+.+++.++.++++++..+
T Consensus 100 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 100 VAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp HHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHHHHHHH
Confidence 2222 2389999999999976532222221 2334 68899998888887766544
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.47 E-value=7.1e-14 Score=129.05 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|+|..+.+....+.|.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS---------------------------------------- 41 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE----------------------------------------
Confidence 4689999999999999999999876522221111100000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~ 191 (604)
+.+ ......+.++||||.... ..+...|++.+|++++|++..+.+. .. ..
T Consensus 42 --------------~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 93 (166)
T 3q72_A 42 --------------IVV-DGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASE 93 (166)
T ss_dssp --------------EEE-TTEEEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHH
Confidence 001 111125789999997553 4566788999999999886654321 11 11
Q ss_pred HHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 192 AIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 192 ~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
++... ..|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+.....
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 21111 1689999999999865432111111112233457888999888888877776655433
No 22
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=1.9e-13 Score=134.00 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=92.9
Q ss_pred CcCCCCCCCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHH
Q 007422 25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVR 104 (604)
Q Consensus 25 ~~~~~~~~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 104 (604)
..+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+....
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~------------------------------- 68 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYV------------------------------- 68 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEE-------------------------------
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeee-------------------------------
Confidence 3567666678999999999999999999999987622211112221100
Q ss_pred HHHHHhhhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 007422 105 KEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (604)
Q Consensus 105 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~ 184 (604)
.........+.||||||....+..... . .....+..+...+|++|+|++..+
T Consensus 69 ------------------------~~~~~~~~~~~l~DtpG~~~~~~~~~~--~--~~~~~~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 69 ------------------------GHFDHKLNKYQIIDTPGLLDRAFENRN--T--IEMTTITALAHINGVILFIIDISE 120 (228)
T ss_dssp ------------------------EEEEETTEEEEEEECTTTTTSCGGGCC--H--HHHHHHHHHHTSSEEEEEEEETTC
T ss_pred ------------------------eeeecCCCeEEEEECCCCcCcccchhh--h--HHHHHHHHhhccccEEEEEEeccc
Confidence 000111236899999999653221100 0 001223456788899988887654
Q ss_pred Cc-chhh---HHHHhh-----hcceeEEEecccCCCCCCCHH---HHHhCCccccC--CCEEEEEeCChhhhhccccHHH
Q 007422 185 QD-LATS---DAIKIS-----RERTFGVLTKIDLMDKGTDAA---DILEGKSYRLK--FPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 185 ~d-~~~~---~~l~l~-----~~r~i~VltK~D~~~~~~~~~---~~l~~~~~~l~--~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.. +... .++... ..|+++|+||+|+.+...... ..+.......+ ..|+.+++.++.++++++..+.
T Consensus 121 ~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 121 QCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp TTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHH
Confidence 32 1111 233322 378999999999986543111 11111111111 4577777777777766665544
Q ss_pred H
Q 007422 251 A 251 (604)
Q Consensus 251 ~ 251 (604)
.
T Consensus 201 ~ 201 (228)
T 2qu8_A 201 E 201 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.46 E-value=1e-13 Score=150.35 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=98.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
++|++||.+|+|||||+|+|+|.++...+ ...+|+-+..-.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~-------------------------------------- 285 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEE-------------------------------------- 285 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEE--------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEE--------------------------------------
Confidence 68999999999999999999998652222 222333331111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCc-cccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~-~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
+.+. ...++||||||+. ........ .--..+..|++.+|++|+|++..+.. ....+
T Consensus 286 --------------i~~~---g~~~~l~DTaG~~~~~~~~ve~-----~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 286 --------------IVIR---GILFRIVDTAGVRSETNDLVER-----LGIERTLQEIEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp --------------EEET---TEEEEEEESSCCCSSCCTTCCC-----CCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH
T ss_pred --------------EecC---CeEEEEEECCCccccchhhHHH-----HHHHHHHHHhhcccEEEEEecCCCCCCHHHHH
Confidence 1111 1258999999997 43221110 00234567899999999988765542 22223
Q ss_pred HHHhh-hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 192 AIKIS-RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 192 ~l~l~-~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.+... ..|+++|+||+|+.+.. ...++.. .......++.+++.++.++++++..+.....
T Consensus 344 il~~l~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 344 ILERIKNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHTTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHhcCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33333 38999999999997542 2222211 0112246899999999999998887766433
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=131.44 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......|......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 56 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-------------------------------------- 56 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE--------------------------------------
Confidence 457899999999999999999998875322211111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~ 190 (604)
.+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. ...
T Consensus 57 --------------~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 57 --------------TIELD-GKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp --------------EEEET-TEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 00010 01125889999996543 3456789999999999887655321 112
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
.++... ..|+++|+||+|+.+................+..|+.+++.++.++++++..+.....+
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222222 26899999999997654321111111122345679999999998888877766554443
No 25
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.46 E-value=1.6e-13 Score=128.99 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 457899999999999999999998875 322222222111110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~ 190 (604)
+.+ ......+.||||||.... ..++..|++.+|++|+|++..+.+. ...
T Consensus 59 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 59 ---------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000 001125889999997543 5677889999999999886654321 111
Q ss_pred HHH----Hhh---hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 191 DAI----KIS---RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 191 ~~l----~l~---~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.++ ... ..|+++|+||+|+.+.... ..+. .......+..|+.+++.++.++++++..+.....+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHH-HHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 111 111 2789999999999764321 1111 111112345688888888888888777666554443
No 26
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.45 E-value=3.5e-13 Score=127.69 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
...|+|+|+|.+|+|||||+|+|+|..+-+.+..+ +|+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 62 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN-------------------------------------- 62 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEE--------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeE--------------------------------------
Confidence 36789999999999999999999998742222111 111110
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCCcc
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDL 187 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~---d~iIl~v~~a~~d~ 187 (604)
.... ...+.+|||||+..... +.........++..|++.+ |+++++++......
T Consensus 63 -------------------~~~~-~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 119 (195)
T 3pqc_A 63 -------------------FYLV-NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ 119 (195)
T ss_dssp -------------------EEEE-TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred -------------------EEEE-CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC
Confidence 0000 12688999999765321 2223445677777888776 77777765543211
Q ss_pred -hhhH---HHHhhhcceeEEEecccCCCCCCCH--HHHHhCCccc-cCCCEEEEEeCChhhhhccccHHHHH
Q 007422 188 -ATSD---AIKISRERTFGVLTKIDLMDKGTDA--ADILEGKSYR-LKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 188 -~~~~---~l~l~~~r~i~VltK~D~~~~~~~~--~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.... ++.....|+++|+||+|+.++.... .+.+...... ....|+.+++.++.++++++..+...
T Consensus 120 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 120 DSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 1112 2222338999999999998643211 1111111111 12468889988888888777665543
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.45 E-value=1.1e-13 Score=127.40 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=89.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 44 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK-------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEE--------------------------------------
Confidence 46899999999999999999998875 322222222111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~ 191 (604)
+.+ ......+.||||||.... ..+...|++.+|++++|++..+.+. . ...
T Consensus 45 --------------~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 45 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp --------------EEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 000 011125889999996543 5677889999999999886654321 1 111
Q ss_pred HHH----hh---hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 192 AIK----IS---RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 192 ~l~----l~---~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
++. .. ..|+++|+||+|+.+.... ..+. .......+..|+.+++.++.++++++..+..
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH-HHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH-HHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 111 11 2789999999999764321 1111 1111123346888888888888776665543
No 28
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.9e-14 Score=131.86 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|+|..+.+......|......
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 49 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR-------------------------------------- 49 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE--------------------------------------
Confidence 568999999999999999999999876222111111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~ 190 (604)
.+.+.+ ....+.+|||||.... ..++..|++.+|++|+|++..+.... ..
T Consensus 50 --------------~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (181)
T 3tw8_B 50 --------------TVEING-EKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSAESFVNVK 101 (181)
T ss_dssp --------------EEEETT-EEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEECC-EEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000100 0125889999996543 22345788999999998866553211 11
Q ss_pred HHHHhhh-----cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIKISR-----ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~l~~-----~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.++.... .|+++|+||+|+.+................+..|+.+++.++.++++++..+...
T Consensus 102 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 102 RWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp HHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 2222222 6889999999987543211111111112234568888888887777766655443
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.45 E-value=6.7e-14 Score=130.66 Aligned_cols=152 Identities=12% Similarity=0.128 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 55 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTR------------------------------------- 55 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 467999999999999999999999875 222111111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
.+.+. .....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 56 --------------~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 56 --------------IIEVS-GQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp --------------EEEET-TEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 01110 01125889999996543 4567889999999999887654321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.++.....+.........+..|+.+++.++.++++++..+.
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 222211 267999999999975432111111111112345688888888888877665543
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=3.3e-14 Score=135.31 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|.+|+|||||+|+|++..+. ..... |... ...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-~~~~-~~~------------------------------------ 61 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-HNISP-TIGA-SFM------------------------------------ 61 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCCC-CSSE-EEE------------------------------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-CCcCC-Ccce-eEE------------------------------------
Confidence 34578999999999999999999988752 11111 1000 000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-h
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-T 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~ 189 (604)
...+.+ ......+.||||||.... ..++..|++.+|++|+|++..+.+. . .
T Consensus 62 -------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~ 114 (192)
T 2fg5_A 62 -------------TKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTL 114 (192)
T ss_dssp -------------EEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHH
T ss_pred -------------EEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHH
Confidence 000000 011126889999997543 3446688999999999887655421 1 1
Q ss_pred hHHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 190 SDAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 190 ~~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
..++... ..|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 115 ~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 115 KKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 1222222 27899999999997533211111111112234568899999888888777665543
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.44 E-value=9.8e-14 Score=128.49 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+......
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 46 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK-------------------------------------- 46 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE--------------------------------------
Confidence 346899999999999999999998875222111111000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
.+.+. .....+.+|||||.... ..+...|++.+|++|+|++..+.+. . ..
T Consensus 47 --------------~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 47 --------------KLNIG-GKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDEDSFQKVK 98 (170)
T ss_dssp --------------EEESS-SCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEEC-CEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00010 01125889999996543 3455678899999999886654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++... ..|+++|+||+|+.++... ..+. .......+..|+.+++.++.++++++..+..
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEA-ESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHH-HHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 222221 2688999999999764321 1111 1111123456888998888888777765544
No 32
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=130.48 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 54 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 54 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 567999999999999999999998875 322222222111110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
+.+ ......+.||||||.... ..+...|++.+|++|+|++..+.+. . ..
T Consensus 55 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 55 ---------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 001 011125889999997553 5667889999999999886654321 1 11
Q ss_pred HHH----Hhh---hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 191 DAI----KIS---RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 191 ~~l----~l~---~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
.++ ... ..|+++|+||+|+.+.... ..+.. ......+..|+.+++.++.++++++..+.....+
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK-NRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHH-HHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHH-HHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 121 111 2789999999999764321 11111 1111234568899999888888887776655444
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.44 E-value=1.8e-13 Score=129.37 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=65.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.|+||||.... ..++..|++.+|++|+|++..+.+. .. ..++... ..|+++|+||+
T Consensus 71 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 71 HLQLWDTAGLERF-------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEECCSGGG-------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEeCCCcHHH-------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 6889999998543 5678899999999999887654321 11 1222221 27899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
|+.+......+.+.......+..|+.+++.++.++++++..+....
T Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9976432111111111112345688888888877777766655443
No 34
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.44 E-value=3e-13 Score=128.89 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=62.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhhh----cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~~----~r~i~VltK~D~~ 210 (604)
.+.||||||.... ..++..|++.+|++|+|++..+... .. ..++.... .|+++|+||+| .
T Consensus 94 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~ 159 (208)
T 3clv_A 94 KFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-K 159 (208)
T ss_dssp EEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-C
T ss_pred EEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-c
Confidence 6899999996543 3356788999999999886654321 11 12222222 78999999999 4
Q ss_pred CC-CCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 211 DK-GTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 211 ~~-~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.. .....++.. .....+..|+.+++.++.++++++..+...
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 160 NKFQVDILEVQK-YAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp C-CCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ccccCCHHHHHH-HHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 32 222222211 111234578889988888887777665543
No 35
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.44 E-value=1.6e-13 Score=131.52 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+.... |. .+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~~------------------------------------ 47 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFKV------------------------------------ 47 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEEE------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEEE------------------------------------
Confidence 457999999999999999999999876322111 10 000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
..+.+ ......+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 48 -------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 48 -------------KTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 00000 011126889999998653 5677889999999999887654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..|+++|+||+|+.+...............++..|+.+++.++.++++++..+....
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 222222 278999999999976432111111111112334678888877777776666554433
No 36
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.44 E-value=4e-14 Score=153.47 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
-.+|+|+|.+|+|||||+|+|+|.+.. .++..|.+.+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a-----~vs~~~gtT~-------------------------------------- 269 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA-----IVSHMPGTTR-------------------------------------- 269 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC----------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCCCceE--------------------------------------
Confidence 356999999999999999999998642 2222221111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch-----
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA----- 188 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~----- 188 (604)
.+.. ..+.+ +...+.||||||+.+.... +....-..+..|++.+|++++|++..+....
T Consensus 270 ------d~~~--~~i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~ 333 (476)
T 3gee_A 270 ------DYIE--ECFIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTE 333 (476)
T ss_dssp ---------C--EEEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHHH
T ss_pred ------EEEE--EEEEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHH
Confidence 0000 01111 1126899999999653211 1111123356789999999998876654322
Q ss_pred hhHHHHhhh-cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 189 TSDAIKISR-ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 189 ~~~~l~l~~-~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
...++.... .|+++|+||+|+.+......+.+... . ...++.+++.++.++++++..+...
T Consensus 334 ~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 334 IRELKAAHPAAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHCTTSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred HHHHHHhcCCCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHHHHH
Confidence 223333332 89999999999976542111111111 0 1468999999999998887766543
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.4e-13 Score=128.82 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+....+++.......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~------------------------------------- 51 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK------------------------------------- 51 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE-------------------------------------
Confidence 4568999999999999999999998764333222211111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
.+.+. .....+.+|||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 52 --------------~~~~~-~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 52 --------------VLDVD-GVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp --------------EEEET-TEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 00010 00125889999996542 4567789999999999886654321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++... ..|+++|+||+|+.++.....+.........+..|+.+++.++.++++++..+..
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 222221 2789999999999864431111111111123456888888888887776665543
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=131.92 Aligned_cols=154 Identities=13% Similarity=0.185 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~---~~~------------------------------------ 64 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DFK------------------------------------ 64 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTE---EEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce---eEE------------------------------------
Confidence 34568999999999999999999998752221111100 000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT- 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~- 189 (604)
...+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.. +..
T Consensus 65 -------------~~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~ 117 (192)
T 2il1_A 65 -------------IKTVELR-GKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDL 117 (192)
T ss_dssp -------------EEEEEET-TEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEEC-CeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0001110 01125899999996543 566788999999999988765532 111
Q ss_pred hHHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccc-cCCCEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..++... ..++++|+||+|+.+......+........ ....|+.+++.++.++++++..+..
T Consensus 118 ~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 118 PKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 1222222 278999999999975432111111100111 2456888888888888777665544
No 39
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.43 E-value=8.3e-14 Score=140.73 Aligned_cols=153 Identities=21% Similarity=0.246 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.+.|+++|.+|+|||||+|+|+|..+ +.+.- .+|..+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~--------------------------------------- 42 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKE--------------------------------------- 42 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEE---------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEE---------------------------------------
Confidence 46899999999999999999999874 33322 12221111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~~ 190 (604)
..+... ...+.||||||+.+........... +.++..|+ +.+|++|+++++.+.+. ..
T Consensus 43 ---------------~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~~~~-~~ 102 (274)
T 3i8s_A 43 ---------------GQFSTT-DHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNLER-NL 102 (274)
T ss_dssp ---------------EEEECS-SCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGGHHH-HH
T ss_pred ---------------EEEEeC-CCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCChHH-HH
Confidence 111111 2368899999998765322112222 33455565 78999999887665321 11
Q ss_pred HH---HHhhhcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DA---IKISRERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~---l~l~~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.. +.....|+++|+||+|+.+... +...+ ...++.+++.+++.++.++++++..+.
T Consensus 103 ~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~i~~SA~~g~gi~el~~~i~ 164 (274)
T 3i8s_A 103 YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCPVIPLVSTRGRGIEALKLAID 164 (274)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSCEEECCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH----HHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 11 1222389999999999875432 11111 123456799999999988887765543
No 40
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.43 E-value=9.1e-14 Score=128.59 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|+|..+.+.... +... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~--~~~-------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP-TIGA--SFM-------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC-CCSE--EEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ceeE--EEE--------------------------------------
Confidence 46899999999999999999999875322111 0000 000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~ 191 (604)
...+.+ ......+.+|||||.... ..+...|++.+|++|+|++..+... .. ..
T Consensus 45 -----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 -----------TKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 000001 011125889999998543 3456788999999999886654321 11 12
Q ss_pred HHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
++.... .++++|+||+|+.+......+.........+..|+.+++.++.++++++..+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 222221 67889999999976433211111111112345688888888888776665443
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.43 E-value=5.5e-14 Score=129.79 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++.....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 43 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFL--------------------------------------- 43 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEE---------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEE---------------------------------------
Confidence 346899999999999999999998765 2221111100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
...+.+ ......+.+|||||.... ..++..|++.+|++++|++..+.+ +.. .
T Consensus 44 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (168)
T 1z2a_A 44 ------------ERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAIS 97 (168)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 000111 011126889999996543 234567889999999988765532 111 1
Q ss_pred HHHHhh-----hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS-----RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.++.....+.........+..|+.+++.++.++++++..+.
T Consensus 98 ~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 98 SWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp HHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 222222 379999999999976432111111111112345678888888777776665544
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=131.66 Aligned_cols=154 Identities=11% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+..... ........
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~~~------------------------------------- 65 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT-IGVEFSTR------------------------------------- 65 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCC-SSEEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-cceeEEEE-------------------------------------
Confidence 4568999999999999999999998763222111 00000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
.+.+ ......+.||||||.... ..++..|++.+|++|+|++..+... . ..
T Consensus 66 --------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 66 --------------TVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVE 117 (193)
T ss_dssp --------------EEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0001 111125889999998653 3356788999999999876654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.++... ..++++|+||+|+.+................+..|+.+++.++.++++++..+...
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 222222 27899999999997643211111111111233568888888888777766655443
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=125.95 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccccc-ccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+|+|++|+|||||+|+|+|..+.+....+. |...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE---------------------------------------- 42 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE----------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE----------------------------------------
Confidence 35789999999999999999999987522211100 0000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT- 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~- 189 (604)
..+.+.+ ....+.+|||||..... ...+...|++.+|++|+|++..+.. +..
T Consensus 43 --------------~~~~~~~-~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 96 (175)
T 2nzj_A 43 --------------RTLTVDG-EDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRGSFESA 96 (175)
T ss_dssp --------------EEEEETT-EEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHH
T ss_pred --------------EEEEECC-EEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHHHHHHH
Confidence 0011110 11257899999975421 1345567889999999988665432 111
Q ss_pred hHHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 190 SDAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 190 ~~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
..++... ..|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 97 SELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp HHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1222111 278999999999976432111111111112345688888888888887776665443
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.43 E-value=1.8e-13 Score=128.94 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+.+......+......
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 50 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK-------------------------------------- 50 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE--------------------------------------
Confidence 457999999999999999999998876322211111000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
.+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. .. .
T Consensus 51 --------------~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 51 --------------IINVG-GKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp --------------EEEET-TEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 00010 01125889999997543 5677889999999999887655321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++... ..|+++|+||+|+.+... ...+.. ......+..|+.+++.++.++++++..+.....
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS-RFAQENELMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHH-HHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 222111 278999999999975332 111111 111123456888888888888877766654443
No 45
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.43 E-value=1.3e-13 Score=148.67 Aligned_cols=157 Identities=19% Similarity=0.295 Sum_probs=96.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+|.|++||.+|+|||||+|+|+|..+.-++ ...+||...
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~---------------------------------------- 40 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV---------------------------------------- 40 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCS----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCcccee----------------------------------------
Confidence 489999999999999999999998741111 111222111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh--h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~--~ 190 (604)
.-.+... ...+.||||||+..... ..+...+...+..|++.+|++|+|++..+ .... .
T Consensus 41 --------------~~~~~~~-~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~ 100 (439)
T 1mky_A 41 --------------QDTVEWY-GKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVDGKR-GITKEDE 100 (439)
T ss_dssp --------------EEEEEET-TEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEETTT-CCCHHHH
T ss_pred --------------eEEEEEC-CeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHH
Confidence 1111111 12578999999875321 12456678888999999999999886543 2221 1
Q ss_pred ---HHHHhhhcceeEEEecccCCCC-CCCH-HHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHHHH
Q 007422 191 ---DAIKISRERTFGVLTKIDLMDK-GTDA-ADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 191 ---~~l~l~~~r~i~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
++++....|+++|+||+|+.+. .... .+. ..++. .++.+++.++.+++++++.+.....+
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 2233334899999999998532 1111 111 23444 47889999999999888877665554
No 46
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.43 E-value=8.4e-14 Score=150.42 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=85.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.+|+++|.+|+|||||+|+|+|.++...+. ..+|+...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~----------------------------------------- 263 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV----------------------------------------- 263 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH-----------------------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE-----------------------------------------
Confidence 469999999999999999999976522221 11221110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDA 192 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~ 192 (604)
.. .+.+ +...++||||||+.+.... +....-.....+++.+|++++|++..+.. .....+
T Consensus 264 ---------~~--~i~~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i 324 (462)
T 3geh_A 264 ---------ES--QLVV---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI 324 (462)
T ss_dssp ---------HH--EEEE---TTEEEEECC-------------------------CCCCSCSEEEEEEETTTCSCHHHHHH
T ss_pred ---------EE--EEEE---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHH
Confidence 00 0111 1125789999999653211 11111123456889999999988765532 222334
Q ss_pred HHhhh-cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 193 IKISR-ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 193 l~l~~-~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
+.... .|+++|+||+|+.+..... .........+++.+++.++.++++++..+...
T Consensus 325 ~~~l~~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 325 YEQVKHRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp HHHHTTSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhccCCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44333 7999999999997643211 11112234578999999999998887766543
No 47
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.43 E-value=1.4e-13 Score=128.62 Aligned_cols=155 Identities=13% Similarity=0.140 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 49 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKI------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEE-------------------------------------
Confidence 567999999999999999999999865 222222222211100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
+.+. .....+.||||||.... ..+...|++.+|++|+|++..+.+. . ..
T Consensus 50 ---------------~~~~-~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 50 ---------------CSVD-GIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp ---------------EEET-TEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEEC-CEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 0000 00125789999997653 2345678889999999886554321 1 11
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++... ..|+++|+||+|+.+................+..|+.+++.++.++++++..+.....
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 222111 2689999999999764321111111111223456888888888888877776654443
No 48
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.42 E-value=1.3e-13 Score=127.63 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|+|..+.+......+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 43 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK--------------------------------------- 43 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEE---------------------------------------
Confidence 46899999999999999999999876322211111100000
Q ss_pred hcCCCCcccCccEEEEEecCC-CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 114 ETGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
. +...+ ...+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 44 -------------~--~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 44 -------------T--VDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIK 95 (170)
T ss_dssp -------------E--EESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred -------------E--EEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0 11111 125889999997553 2235678899999999887654321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..|+++|+||+|+.+........ .......+..|+.+++.++.++++++..+....
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHH-HHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHH-HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 222222 27899999999995433221111 111112345688888888888877766655443
No 49
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.42 E-value=2.4e-13 Score=127.80 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|.+|+|||||+|+|++..+ +....+++.... ...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~~----------------------------------- 58 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LKH----------------------------------- 58 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EEE-----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EEE-----------------------------------
Confidence 3556899999999999999999998765 332222221111 000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-h
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-T 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~ 189 (604)
+.+ ......+.+|||||.... ..+...|++.+|++|+|++..+.. +. .
T Consensus 59 ----------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 108 (183)
T 3kkq_A 59 ----------------TEI-DNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHV 108 (183)
T ss_dssp ----------------EEE-TTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred ----------------EEe-CCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 000 001114678999997553 234567888999999988665532 11 1
Q ss_pred hHHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeC-ChhhhhccccHHHHH
Q 007422 190 SDAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR-SQADINKNVDMIAAR 252 (604)
Q Consensus 190 ~~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~i~~~~~~~~~~ 252 (604)
..++... ..|+++|+||+|+.+......+.........+..|+.+++. ++.++++++..+...
T Consensus 109 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 109 DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 1222111 16899999999997643321111111122334679999998 888888777665543
No 50
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=2.4e-13 Score=125.85 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=63.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh--------hcceeEEEec
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS--------RERTFGVLTK 206 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~--------~~r~i~VltK 206 (604)
.+.+|||||.... ..+...|++.+|++|+|++..+.. ... ..++... ..|+++|+||
T Consensus 52 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 52 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 5889999997653 466778899999999988765432 111 1122111 2689999999
Q ss_pred ccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 207 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+|+.+................+..|+.+++.++.++++++..+.
T Consensus 119 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 99976433111111111112345688888888888877665543
No 51
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.42 E-value=1.7e-13 Score=126.35 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 43 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQ--------------------------------------- 43 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEE---------------------------------------
Confidence 5799999999999999999998765 222222111110000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~ 192 (604)
+.+ ......+.+|||||.... ..+...|++.+|++++|++..+.. +.. ..+
T Consensus 44 -------------~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 44 -------------VEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -------------EES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 000 001125889999997653 345667889999999988665432 111 112
Q ss_pred H----Hhh---hcceeEEEecccCCCCCCCHHHHHhCCcccc-CCCEEEEEeCChhhhhccccHHH
Q 007422 193 I----KIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l----~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+ ... ..|+++|+||+|+.+......+......... ...|+.+++.++.++++++..+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHH
Confidence 1 211 2789999999999764321111111111112 45688888888888877666544
No 52
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.42 E-value=3.4e-13 Score=125.93 Aligned_cols=154 Identities=15% Similarity=0.252 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...++|+|+|.+|+|||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 3678999999999999999999999886332222111111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~ 190 (604)
... .+.+. ...+.+|||||...... +...++..+|++|+|++..+... ...
T Consensus 46 ----------~~~--~~~~~---~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d~~~~~~~~~~ 97 (178)
T 2lkc_A 46 ----------GAY--QVTVN---DKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVAADDGVMPQTV 97 (178)
T ss_dssp ----------CCC--EEEET---TEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEETTCCCCHHHH
T ss_pred ----------eEE--EEEeC---CceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEECCCCCcHHHH
Confidence 000 11111 12578999999865432 22467888999999886544221 111
Q ss_pred HHHHhh---hcceeEEEecccCCCCCC-CHHHHHhCC-ccc--cC--CCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS---RERTFGVLTKIDLMDKGT-DAADILEGK-SYR--LK--FPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~---~~r~i~VltK~D~~~~~~-~~~~~l~~~-~~~--l~--~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+.+... ..|+++|+||+|+.+... .....+... ... .+ ..|+.+++.++.++++++..+....
T Consensus 98 ~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 98 EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 222222 288999999999986421 122222211 111 11 3688999999999988877665443
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.42 E-value=9.3e-14 Score=134.80 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=66.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~l~l~~------~r~i~VltK~D 208 (604)
.+.||||||..... .+...|+..+|++|+|++..+... ....++.... .++++|+||+|
T Consensus 62 ~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (218)
T 4djt_A 62 KFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128 (218)
T ss_dssp EEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTT
T ss_pred EEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 58899999976542 234578899999999886654321 1112222221 68999999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
+.+................+..|+.+++.++.++++++..+.....+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp CC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred CccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 97653321222211122344569999999999999888877665444
No 54
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.42 E-value=1.6e-13 Score=137.31 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+++|.+|+|||||+|+|+|..+ +.+.- .+|....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~--------------------------------------- 43 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKK--------------------------------------- 43 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEE---------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEE---------------------------------------
Confidence 346899999999999999999999875 22211 1111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~ 189 (604)
...+... ...+.||||||..+..... .. +.+...|+ ..+|++|+|++..+.+. .
T Consensus 44 ---------------~~~~~~~-~~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii~V~D~t~~~~-~ 99 (258)
T 3a1s_A 44 ---------------EGVFTYK-GYTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVILVADSVNPEQ-S 99 (258)
T ss_dssp ---------------EEEEEET-TEEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEEEEEETTSCHH-H
T ss_pred ---------------EEEEEEC-CeEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEEEEeCCCchhh-H
Confidence 1111111 2368999999997653321 11 34556666 58999999887665432 1
Q ss_pred hHHH-Hh--hhcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAI-KI--SRERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l-~l--~~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..+. .+ ...|+++|+||+|+.+... +...+. ..++.+++.+++.++.++++++..+..
T Consensus 100 ~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 100 LYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ----KHLGIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp HHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH----HHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH----HHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence 1221 12 2389999999999864322 122221 234567999999999998887776654
No 55
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.7e-13 Score=131.77 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....++........
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 66 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIK------------------------------------- 66 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEE-------------------------------------
Confidence 456899999999999999999998775 322221110000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
.+.+.+ ....+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 67 --------------~~~~~~-~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 67 --------------TVEING-EKVKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 118 (201)
T ss_dssp --------------EEEETT-EEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 001100 1125889999997543 5677889999999999887654321 1 12
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++... ..++++|+||+|+.+......+.........+..|+.+++.++.++++++..+.....
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 1678999999999754321111111111123457888888888888877776654443
No 56
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=1.5e-12 Score=136.64 Aligned_cols=171 Identities=21% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|++||.+|||||||+|+|+|..+...+...+|+-|+.-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~------------------------------------- 220 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYA------------------------------------- 220 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEE-------------------------------------
Confidence 5788999999999999999999998752223333444442211
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--chh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LAT- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~~- 189 (604)
+.+ ++ ..+.++||||+... .|.+..+.++.. ..++..+|.++++++..+.+ ...
T Consensus 221 ---------------i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 221 ---------------IPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp ---------------EEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred ---------------EEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHH
Confidence 112 11 25789999998542 133344555443 45789999999888765543 111
Q ss_pred ----hHHHHhh---hcceeEEEecccCCCCCCCH-HHHHhC--Ccc-ccCCCEEEEEeCChhhhhccccHHHHHHHHHHH
Q 007422 190 ----SDAIKIS---RERTFGVLTKIDLMDKGTDA-ADILEG--KSY-RLKFPWIGVVNRSQADINKNVDMIAARRREREY 258 (604)
Q Consensus 190 ----~~~l~l~---~~r~i~VltK~D~~~~~~~~-~~~l~~--~~~-~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~f 258 (604)
.+.+... ..++++|.||+|+.+.+... ...+.. ... .....++.+++.++.+++++...+.....+..+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 1222222 27899999999998654110 111100 001 111246888999899999888888777776666
Q ss_pred hccCC
Q 007422 259 FSTTP 263 (604)
Q Consensus 259 f~~~~ 263 (604)
++.++
T Consensus 358 ~~~~~ 362 (364)
T 2qtf_A 358 EHHHH 362 (364)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65543
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.41 E-value=2.9e-13 Score=126.31 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~------------------------------------- 45 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV---EFL------------------------------------- 45 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSE---EEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee---eEE-------------------------------------
Confidence 4578999999999999999999987752211110000 000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
...+.+. .....+.||||||.... ..+...|++.+|++|+|++..+... .. .
T Consensus 46 ------------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (177)
T 1wms_A 46 ------------NKDLEVD-GHFVTMQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLS 99 (177)
T ss_dssp ------------EEEEEET-TEEEEEEEEECCCCGGG-------------HHHHGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEEC-CEEEEEEEEeCCCchhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 0001110 01125889999996543 5667789999999999886554321 11 1
Q ss_pred HHHHh----------hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKI----------SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l----------~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++.. ...|+++|+||+|+.+......+............|+.+++.++.++++++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 12211 12589999999999744322222211111123457899999988888877765544
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.41 E-value=1.7e-13 Score=131.77 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 47 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKI-------------------------------------- 47 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE--------------------------------------
Confidence 457999999999999999999999875 22211111000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
..+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 48 -------------~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~ 100 (206)
T 2bcg_Y 48 -------------KTVELD-GKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTDQESFNGVK 100 (206)
T ss_dssp -------------EEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEEC-CEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcCHHHHHHHH
Confidence 001110 01125889999997553 2234578999999999887655321 1 11
Q ss_pred HHHHhhh------cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKISR------ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~~------~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++.... .++++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222221 68899999999976432111111111112345688888888777777666555443
No 59
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.41 E-value=3.2e-13 Score=129.61 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....++....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 65 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVD----------------------------------------- 65 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------C-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceE-----------------------------------------
Confidence 457899999999999999999998775 21111100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
+. ...+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 66 --------~~--~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (201)
T 2hup_A 66 --------FT--MKTLEIQ-GKRVKLQIWDTAGQERF-------------RTITQSYYRSANGAILAYDITKRSSFLSVP 121 (201)
T ss_dssp --------EE--EEEEEET-TEEEEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHH
T ss_pred --------EE--EEEEEEC-CEEEEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 00 0011111 01126889999997543 5677899999999999887654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCC-CHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGT-DAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++... ..++++|+||+|+.+... ...+.. ......+. .|+.+++.++.++++++..+.....
T Consensus 122 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 122 HWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQ-SLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHH-HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHH-HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 178999999999976332 111111 11112344 6888998888888887776655443
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.41 E-value=3.2e-13 Score=127.34 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 44 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQ-------------------------------------- 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEE--------------------------------------
Confidence 35899999999999999999998875 222222221111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~ 191 (604)
+.+ ......+.||||||.... ..+...|++.+|+++++++..+.+. ....
T Consensus 45 --------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (189)
T 4dsu_A 45 --------------VVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHH 96 (189)
T ss_dssp --------------EEE-TTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 000 011124788999996553 3456678899999999886654321 1111
Q ss_pred HHHh----h---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKI----S---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l----~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++.. . ..|+++|+||+|+.+........ .......+..|+.+++.++.++++++..+....
T Consensus 97 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 97 YREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQA-QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHH-HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECccCcccccCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2111 1 17899999999998644322211 111123345789999998888888777665543
No 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.41 E-value=3.1e-13 Score=126.59 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+ .....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~-------------------------------------- 51 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG-AAFFS-------------------------------------- 51 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC-CSEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce-eEEEE--------------------------------------
Confidence 346899999999999999999998876322111100 00000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
..+.+. .....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 52 -------------~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 52 -------------QTLAVN-DATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDVTNQASFERAK 104 (181)
T ss_dssp -------------EEEEET-TEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEEC-CEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000010 01126889999996543 3456788999999999886544321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+.
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 222221 267999999999976543211111111112345688889888888877766554
No 62
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.40 E-value=4.6e-13 Score=122.86 Aligned_cols=149 Identities=13% Similarity=0.186 Sum_probs=89.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+|+|.+|+|||||+|+|++..+.+. ...++......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~---------------------------------------- 42 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRK---------------------------------------- 42 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEE----------------------------------------
Confidence 4799999999999999999998875322 11111110000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~ 192 (604)
.+.+. .....+.+|||||.... ..+...|+..+|+++++++..+.+. . ...+
T Consensus 43 ------------~~~~~-~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 43 ------------QVVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96 (166)
T ss_dssp ------------EEEET-TEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00010 01125789999997543 3456778899999999887654321 1 1122
Q ss_pred HHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 193 IKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 193 l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+... ..|+++|+||+|+.+........ .......+.+++.+++.++.++++++..+..
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAARTVESRQA-QDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHH-HHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHH-HHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 2211 27899999999998743222111 1111223457888988888888777665544
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.40 E-value=1.3e-13 Score=130.57 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+.... |. .+...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~------------------------------------- 60 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFK------------------------------------- 60 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CC-CCEEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--ce-eEEEE-------------------------------------
Confidence 356899999999999999999999876322111 10 00000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
...+.+ ......+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 61 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 114 (189)
T 2gf9_A 61 ------------VKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQ 114 (189)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHH
Confidence 000001 011125889999997553 2235678999999999886654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..++++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 115 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 115 DWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 222222 278999999999976432111111111112334678888887777777666555443
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.40 E-value=3.6e-13 Score=126.02 Aligned_cols=156 Identities=12% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 47 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--------------------------------------- 47 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEE---------------------------------------
Confidence 46799999999999999999999987522211111100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
..+.+.+.....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 48 -------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 48 -------------KEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -------------EEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 001111112236889999995432 4556788999999999886654321 11 1
Q ss_pred HHHHh----------hhcceeEEEecccCCCCCC--CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKI----------SRERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l----------~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++.. ...|+++|+||+|+.+... ...+...-........|+.+++.++.++++++..+....
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 12211 1268999999999864322 111111100112345789999988888887776665443
No 65
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=2.5e-13 Score=137.23 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------ 45 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------ 45 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC------------------------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc------------------------------------------
Confidence 35899999999999999999999887555432111000
Q ss_pred hcCCCCcccCccEEEEEecCC-CCCceEeeCCCCccccCC-CCCccHHHHHHHHHHHhhcC-------------CCeEEE
Q 007422 114 ETGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEK-------------PNCIIL 178 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPGi~~~~~~-~q~~~~~~~i~~~~~~~i~~-------------~d~iIl 178 (604)
. .++..+.....+...+ ...++||||||+.+.... ..-..+...+.+....|+.. +|++++
T Consensus 46 --~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~ 121 (274)
T 3t5d_A 46 --K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLY 121 (274)
T ss_dssp -------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEE
T ss_pred --C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEE
Confidence 0 0011111111121111 126899999999654322 11222334444455666665 778988
Q ss_pred EEecCCCcchhhH--HHHhh--hcceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 179 AISPANQDLATSD--AIKIS--RERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 179 ~v~~a~~d~~~~~--~l~l~--~~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
++.+++......+ .++.. +.|+|+|+||+|++.+... ..+.+.......+..++.+++.++.+++++...+
T Consensus 122 ~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 122 FIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp EECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHH
T ss_pred EecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHH
Confidence 8888765444332 23333 3899999999999754321 1111111111223446666777767666655443
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=3e-13 Score=145.77 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.|.|++||.+|+|||||+|+|+|..+..++.. .+||..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~----------------------------------------- 41 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR----------------------------------------- 41 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------C-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccce-----------------------------------------
Confidence 58999999999999999999999765211111 122211
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
....+.. +...+.||||||+.... .+....+...+..+++.+|++|+|++..+.. .....
T Consensus 42 -------------~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~ 102 (436)
T 2hjg_A 42 -------------IYSSAEW-LNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE 102 (436)
T ss_dssp -------------EEEECTT-CSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHH
T ss_pred -------------EEEEEEE-CCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 1111111 12379999999996431 1266778888999999999999988654421 12222
Q ss_pred HHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
..... ..|+++|+||+|+.+...... ..+.++. .++.+++..+.+++++++.+....
T Consensus 103 ~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 103 VAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp HHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred HHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 22322 389999999999876432211 1223344 478899999999888877665443
No 67
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=2.1e-13 Score=137.47 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=93.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.++|+++|.+|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999764211111122211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~ 191 (604)
....+.. ...+.+|||||..+..... .. +.++..|+. .+|++|+|++..+.+ ....
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~vi~V~D~t~~e-~~~~ 98 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRADSILNVVDATNLE-RNLY 98 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCSEEEEEEEGGGHH-HHHH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCCEEEEEecCCchH-hHHH
Confidence 1111222 3478999999997653221 11 445677776 599999888765532 1111
Q ss_pred HHH-h--hhcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIK-I--SRERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~-l--~~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.. + ...|+++|+||+|+..... +...+. ..++.+++.+++.++.++++++..+.
T Consensus 99 ~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 99 LTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp HHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 211 1 2389999999999864321 222221 12346789999999998888776554
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.40 E-value=2.2e-13 Score=127.09 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=88.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|+|+|.+|+|||||+|+|++..+.+......+......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---------------------------------------- 54 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 5899999999999999999998775322211111100000
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDA 192 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~ 192 (604)
.+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.. +. ...+
T Consensus 55 ------------~~~~~-~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 55 ------------TMYLE-DRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp ------------EEEET-TEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ------------EEEEC-CeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00010 01125889999997543 334568889999999988665422 11 1122
Q ss_pred HHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 193 IKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 193 l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+... ..|+++|+||+|+.++...............+..|+.+++.++.++++++..+.
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2221 267899999999976433111111111112345688899888888777665543
No 69
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=3.1e-13 Score=124.82 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~l~l~------~~r~i~VltK~D 208 (604)
.+.+|||||.... ..++..|++.+|++|+|++..+... .. ..++... ..|+++|+||+|
T Consensus 53 ~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 53 KFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 5889999996543 3456788999999999886654321 11 1122211 267899999999
Q ss_pred CCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 209 LMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
+.+... .............+..|+.+++.++.++++++..+
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 976521 11111111111234568888888887777665543
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=3.4e-13 Score=130.06 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+.+.....++......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 60 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK-------------------------------------- 60 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEE--------------------------------------
Confidence 568999999999999999999998876332211111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
.+.+.+ ....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 61 --------------~~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 61 --------------TVDING-KKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp --------------EEEETT-EEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEECC-EEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 001100 0125899999997553 2335678899999999887654321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.++... ..|+++|+||+|+.+........ .......+..|+.+++.++.++++++..+.....+.
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHH-HHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 222222 26899999999994432221111 111112345789999999999888887776655443
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.40 E-value=2.3e-13 Score=125.77 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=61.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~------~~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...|++.+|++|+|++..+.. +.. ..++... ..++++|+||+|
T Consensus 56 ~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 56 KFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 5889999997553 345678899999999988665432 111 1222221 167888899999
Q ss_pred CCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 209 LMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 209 ~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.+.... ..+... .....+..|+.+++.++.++++++..+.
T Consensus 123 l~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 123 LANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp GGGGCCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CccccccCHHHHHH-HHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 8754321 111111 1112345688888888888777665543
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.40 E-value=1.8e-13 Score=129.62 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=87.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~--------------------------------------- 58 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF-R--------------------------------------- 58 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-E---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-E---------------------------------------
Confidence 457899999999999999999998775222111110000 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCCcc--hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE-NMVRSYIEKPNCIILAISPANQDL--AT 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~-~~~~~~i~~~d~iIl~v~~a~~d~--~~ 189 (604)
...+.+. .....+.||||||.... . .++..|++.+|++|+|++..+... ..
T Consensus 59 ------------~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 59 ------------ERAVDID-GERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp ------------EEEEEET-TEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred ------------EEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0001110 01126899999996432 3 567889999999999887654311 11
Q ss_pred hHHH----Hhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCCh---hhhhccccH
Q 007422 190 SDAI----KIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ---ADINKNVDM 248 (604)
Q Consensus 190 ~~~l----~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~i~~~~~~ 248 (604)
..++ ... ..++++|+||+|+.+......+.........+..|+.+++.++ .++++++..
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHH
Confidence 1222 221 2789999999999754321111111111223457888988887 555554443
No 73
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.40 E-value=1.1e-13 Score=129.44 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++..-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~----------------------------------------- 42 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLD----------------------------------------- 42 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSS-----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEE-----------------------------------------
Confidence 346899999999999999999998765 22111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
+ ....+.+.+.....+.+|||||.... ..++..|++.+|++|+|++..+.+. .. .
T Consensus 43 --------~--~~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (178)
T 2hxs_A 43 --------F--FLRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLE 99 (178)
T ss_dssp --------E--EEEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------E--EEEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0 00011111111236899999997543 2346788999999999887655321 11 1
Q ss_pred HHHHhh--------hcc-eeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKIS--------RER-TFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~--------~~r-~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++... ..+ +++|+||+|+.+......+.........+..|+.+++.++.++++++..+..
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 222221 234 7899999999763321111111111123456888999888888877765543
No 74
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.39 E-value=2.4e-13 Score=127.62 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 46 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKL------------------------------------- 46 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEE-------------------------------------
Confidence 457899999999999999999997664 322222222111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~ 190 (604)
+.+ ......+.||||||..... .+...|++.+|++|+|++..+.+.. ..
T Consensus 47 ---------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (181)
T 3t5g_A 47 ---------------ITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIK 97 (181)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 000 0011257899999986642 2345688999999998866543211 11
Q ss_pred HHH----Hhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAI----KIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l----~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++ ... ..|+++|+||+|+.+................+..|+.+++.++.++++++..+....
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 111 111 278999999999875443211111111223345799999999999988877665443
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.39 E-value=8.6e-13 Score=125.62 Aligned_cols=155 Identities=13% Similarity=0.204 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...++|+|+|.+|+|||||+|+|++..+......+++. . ...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~-~~~------------------------------------ 56 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-Y-NVE------------------------------------ 56 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-E-EEE------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-e-eEE------------------------------------
Confidence 46789999999999999999999998862212111111 0 000
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+ +...
T Consensus 57 -----------------~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~ 105 (199)
T 4bas_A 57 -----------------TFE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHLRLCVV 105 (199)
T ss_dssp -----------------EEE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGGGHHHH
T ss_pred -----------------EEE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHHHHHHH
Confidence 011 11236899999998654 345568899999999988766543 2111
Q ss_pred -HHHHhh--------------hcceeEEEecccCCCCCC--CHHHHHhCCc--cccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 -DAIKIS--------------RERTFGVLTKIDLMDKGT--DAADILEGKS--YRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 -~~l~l~--------------~~r~i~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++... ..++++|+||+|+.+... ...+.+.... ......|+.+++.++.++++++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 222211 468999999999987532 1112111000 123346888888888888887776655
Q ss_pred HHHH
Q 007422 252 RRRE 255 (604)
Q Consensus 252 ~~~e 255 (604)
...+
T Consensus 186 ~~~~ 189 (199)
T 4bas_A 186 TASR 189 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 76
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.39 E-value=2e-13 Score=129.66 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 58 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 58 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 445899999999999999999998876332211111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
....+.+.+ ....+.||||||.... ..++..|++.+|++|+|++..+.+. .. .
T Consensus 59 -----------~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 59 -----------GARMVNIDG-KQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLT 113 (191)
T ss_dssp -----------EEEEEEETT-EEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEECC-EEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000011110 1126889999997553 2235678999999999887655321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..++++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222222 278999999999975332111111111112345688888888888877776655443
No 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=123.41 Aligned_cols=149 Identities=11% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+. ... +|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~-~t~------------------------------------------- 48 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTS-PTI------------------------------------------- 48 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEE-CCS-------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cCc-CCC-------------------------------------------
Confidence 4579999999999999999999987652 110 010
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
++... .+.+ +...+.+|||||.... ..++..|++++|++|+|++..+.+ +...
T Consensus 49 -------~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (187)
T 1zj6_A 49 -------GSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRERISVTR 103 (187)
T ss_dssp -------CSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHH
T ss_pred -------ccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 01100 1111 1236899999998553 334568899999999988766542 2211
Q ss_pred HHHH-h------hhcceeEEEecccCCCCCC--CHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIK-I------SRERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~-l------~~~r~i~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.++. . ...|+++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++++..+...
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 175 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence 1211 1 1278999999999976432 112222111 11223467889999888888777665543
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=129.71 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+. ...++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~-------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFREN-ISATL-------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCCc--------------------------------------------
Confidence 467999999999999999999998875211 11000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
| .......+.+. .....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 62 ---~----~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 62 ---G----VDFQMKTLIVD-GERTVLQLWDTAGQERF-------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp ----------CEEEEEEET-TEEEEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---c----ceeEEEEEEEC-CEEEEEEEEECCCCcch-------------hhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 0 00000011111 11125899999996543 5667889999999999887654321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCC------CCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDK------GTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~------~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+. .....+.........+..|+.+++.++.++++++..+.
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 222222 2789999999998631 11001111101112344678888888777776665544
No 79
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.1e-13 Score=131.38 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 58 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI------------------------------------------- 58 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETT-------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeee-------------------------------------------
Confidence 5678999999999999999999987752221110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
......+.+. .....+.||||||.... ..+...|++.+|++|+|++..+.+. . ..
T Consensus 59 ---------~~~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 59 ---------DFKVKTVYRH-EKRVKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 115 (191)
T ss_dssp ---------TEEEEEEEET-TTTEEEEEECHHHHHHC-------------HHHHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ---------EEEEEEEEEC-CEEEEEEEEeCCChHHH-------------HHHHHHHHccCCEEEEEEECcCHHHHHHHH
Confidence 0000011111 11235899999995432 6678899999999999887654321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.++... ..|+++|+||+|+.+................+..|+.+++.++.++++++..+...
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 222222 27899999999986543221111111112234568888888888887776655543
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.39 E-value=4.2e-13 Score=128.77 Aligned_cols=155 Identities=14% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+.......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~------------------------------------- 49 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------------------------------------- 49 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEE-------------------------------------
Confidence 4578999999999999999999998763222111111000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
+.+ ......+.||||||..... .++..|++.+|++|+|++..+.+. .. .
T Consensus 50 ---------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 50 ---------------VMV-DDRLVTMQIWDTAGQERFQ-------------SLGVAFYRGADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp ---------------EES-SSCEEEEEEEEECSSGGGS-------------CSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCcHHHH-------------HhHHHHHhCCcEEEEEEECCCHHHHHHHH
Confidence 000 0011258999999975542 234578899999999886654321 11 1
Q ss_pred HHHH----h------hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIK----I------SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~----l------~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++. . ...|+++|+||+|+.+...................|+.+++.++.++++++..+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1211 1 1268999999999985432222211111112345688888888888877776655443
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.39 E-value=3.5e-13 Score=124.74 Aligned_cols=104 Identities=9% Similarity=0.020 Sum_probs=60.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.++||||..... ..+...|++.+|++++|++..+.+. . ...++... ..|+++|+||+
T Consensus 52 ~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 52 TLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 57899999986531 1244567788999999886655321 1 11222211 26899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHH
Confidence 987543321111111122334578899998888888777665543
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.38 E-value=1.5e-12 Score=119.77 Aligned_cols=102 Identities=16% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-------hcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-------RERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-------~~r~i~VltK 206 (604)
..+.+|||||.... ..++..|++++|++|+|++..+.+ +.. ..++... ..|+++|+||
T Consensus 44 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (164)
T 1r8s_A 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110 (164)
T ss_dssp CEEEEEECCCCGGG-------------HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEEEcCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEEC
Confidence 36899999998553 567788999999999988765532 221 1222111 2789999999
Q ss_pred ccCCCCCCCHHHHHh--CCc--cccCCCEEEEEeCChhhhhccccHHHH
Q 007422 207 IDLMDKGTDAADILE--GKS--YRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+|+.+... ..++.. +.. ...+.+|+.+++.++.++++++..+..
T Consensus 111 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 111 QDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp TTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred cCCcCCCC-HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 99976432 222221 111 112335788888888888777665543
No 83
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.38 E-value=9.6e-13 Score=124.20 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=88.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+++|+|+|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 36899999999999999999999875 32221 122211
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC-CC---eEEEEEecCCCcch
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK-PN---CIILAISPANQDLA 188 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~-~d---~iIl~v~~a~~d~~ 188 (604)
..+.+ ..+.+|||||+...... +....+....++..|++. ++ .++.++++...+..
T Consensus 39 -------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~ 98 (190)
T 2cxx_A 39 -------------IEIEW-----KNHKIIDMPGFGFMMGL--PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98 (190)
T ss_dssp -------------EEEEE-----TTEEEEECCCBSCCTTS--CHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHH
T ss_pred -------------EEEec-----CCEEEEECCCccccccC--CHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhH
Confidence 11111 16899999997653221 222345566777777765 54 44444433221100
Q ss_pred hh------------HHHHh---hhcceeEEEecccCCCCCC-CHHHHHhCCcccc---CCCEEEEEeCChhhhhccccHH
Q 007422 189 TS------------DAIKI---SRERTFGVLTKIDLMDKGT-DAADILEGKSYRL---KFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 189 ~~------------~~l~l---~~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l---~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.. +.+.. ...|+++|+||+|+.+... ....+......+. ...++.+++.++.++++++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 178 (190)
T 2cxx_A 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178 (190)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred HHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHH
Confidence 00 11111 2389999999999986531 1122211100110 1246888888888877776665
Q ss_pred HHH
Q 007422 250 AAR 252 (604)
Q Consensus 250 ~~~ 252 (604)
...
T Consensus 179 ~~~ 181 (190)
T 2cxx_A 179 FEV 181 (190)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 84
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=130.69 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+. ....+++.......
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~------------------------------------- 64 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKI------------------------------------- 64 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEE-------------------------------------
Confidence 5678999999999999999999998763 22222211110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~ 190 (604)
+.+ ......+.||||||..... .++..|++.+|++|+|++..+.+.. ..
T Consensus 65 ---------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 115 (201)
T 3oes_A 65 ---------------VTL-GKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLHSFQVIE 115 (201)
T ss_dssp ---------------EC-----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHHHHHHHH
Confidence 000 0112257899999976542 2345789999999998866543211 11
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++... ..|+++|+||+|+.+................+..|+.+++.++.++++++..+.....
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 1689999999998754432111111111233457899999999999888776655443
No 85
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=2.8e-12 Score=138.98 Aligned_cols=161 Identities=12% Similarity=0.173 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+++|.+|+|||||+|+|+|.+....+.. .+|+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~--------------------------------------- 234 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------------------------------------- 234 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTT---------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEE---------------------------------------
Confidence 578999999999999999999999864222211 1111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh-
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~- 190 (604)
...+.+ . ...++||||||+.+........ ..........|++.+|++|+|++..+ ....+
T Consensus 235 -------------~~~~~~--~-~~~~~l~DT~G~~~~~~~~~~~--e~~~~~~~~~~~~~ad~~llviD~~~-~~~~~~ 295 (456)
T 4dcu_A 235 -------------DTSFTY--N-QQEFVIVDTAGMRKKGKVYETT--EKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQD 295 (456)
T ss_dssp -------------SEEEEE--T-TEEEEETTGGGTTTBTTBCCCC--SHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHH
T ss_pred -------------EEEEEE--C-CceEEEEECCCCCcCcccchHH--HHHHHHHHHHHHhhCCEEEEEEeCCC-CcCHHH
Confidence 011111 1 1268999999987643221111 11112223468899999988876544 33222
Q ss_pred -HHHHhh---hcceeEEEecccCCCCCCCH----HHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 -DAIKIS---RERTFGVLTKIDLMDKGTDA----ADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 -~~l~l~---~~r~i~VltK~D~~~~~~~~----~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++..+ ..++++|+||+|+.+..... .+.+... .......++.+++.++.++++++..+..
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 223332 28999999999998755432 1111111 1111256888999998888887766554
No 86
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=6.7e-13 Score=143.88 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
...|.|++||.+|+|||||+|+|+|..+-.+... .+|+..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~--------------------------------------- 61 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR--------------------------------------- 61 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------C---------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeE---------------------------------------
Confidence 4689999999999999999999999765211111 122211
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~ 189 (604)
....+... ...+.+|||||+... .....+.+...+..+++.+|++|++++..... ...
T Consensus 62 ---------------~~~~~~~~-~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d 120 (456)
T 4dcu_A 62 ---------------IYSSAEWL-NYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD 120 (456)
T ss_dssp ---------------EEEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH
T ss_pred ---------------EEEEEEEC-CceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH
Confidence 11112211 237999999998742 22357788889999999999999987654322 122
Q ss_pred hHHHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.....+. ..++++|+||+|+.+...... ..+.++. .++.+++..+.++.+++..+..
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~-----e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC---------C-----CSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEECccchhhhhhHH-----HHHHcCCCceEEeecccccchHHHHHHHHh
Confidence 2233333 389999999999875432211 1223333 2567888888888777665543
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.38 E-value=5.3e-13 Score=123.63 Aligned_cols=149 Identities=15% Similarity=0.232 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|++..+... .+|.... .
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~-~-------------------------------------- 43 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFN-V-------------------------------------- 43 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSEE-E--------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCccc-e--------------------------------------
Confidence 457999999999999999999998765211 1111100 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
..+.+ +...+.+|||||.... ..++..|++.+|++|+|++..+.. +...
T Consensus 44 -------------~~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 94 (171)
T 1upt_A 44 -------------ETVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94 (171)
T ss_dssp -------------EEEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCTTHHHHH
T ss_pred -------------EEEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00111 1236899999998653 344568899999999988765542 2211
Q ss_pred HHH-Hh------hhcceeEEEecccCCCCCC--CHHHHHhC-CccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAI-KI------SRERTFGVLTKIDLMDKGT--DAADILEG-KSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l-~l------~~~r~i~VltK~D~~~~~~--~~~~~l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
..+ .. ...|+++|+||+|+.+... ...+.+.. .....+..|+.+++.++.++++++..+...
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 111 11 1278999999999976532 11222110 111223467888888888888777665543
No 88
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.38 E-value=2.3e-12 Score=138.87 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|++||.+|+|||||+|+|+|..+...+. ..+|+....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~-------------------------------------- 215 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD-------------------------------------- 215 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC--------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE--------------------------------------
Confidence 56799999999999999999999987532221 111211100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
..+.+ . ...+.||||||+.+....... +..........+++.+|++++|++..+.. ....
T Consensus 216 --------------~~~~~--~-~~~~~l~DT~G~~~~~~~~~~--~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 216 --------------TSFTY--N-QQEFVIVDTAGMRKKGKVYET--TEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 (436)
T ss_dssp --------------EEEEE--T-TEEEEETTHHHHTCBTTBCCC--CSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred --------------EEEEE--C-CeEEEEEECCCcCcCccccch--HHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH
Confidence 01111 1 124889999998654332111 11111112346889999998887655432 1122
Q ss_pred HHHHhh---hcceeEEEecccCCCCCCCH-HHH---HhC-CccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 191 DAIKIS---RERTFGVLTKIDLMDKGTDA-ADI---LEG-KSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 191 ~~l~l~---~~r~i~VltK~D~~~~~~~~-~~~---l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.++..+ ..++++|+||+|+.+..... .++ +.. .......+++.+++.++.++++++..+...
T Consensus 277 ~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 233332 28899999999998754422 111 111 111123578999999999988877665543
No 89
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.37 E-value=2.1e-13 Score=137.50 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+++|.+|+|||||+|+|+|..+ +.+.-+ +|....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~--------------------------------------- 41 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKK--------------------------------------- 41 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEE---------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEee---------------------------------------
Confidence 357899999999999999999999875 443221 111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~ 189 (604)
...+... ...+.+|||||+.+..... .. ..++..|+ .++|++++++++.+.....
T Consensus 42 ---------------~~~~~~~-~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v~D~~~~~~~~ 98 (271)
T 3k53_A 42 ---------------EGIMEYR-EKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDIVDSTCLMRNL 98 (271)
T ss_dssp ---------------EEEEEET-TEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEEEEGGGHHHHH
T ss_pred ---------------EEEEEEC-CceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEEecCCcchhhH
Confidence 0001111 1258999999998654321 11 23456677 6899999988766532111
Q ss_pred hHHHHhh--h-cceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 190 SDAIKIS--R-ERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 190 ~~~l~l~--~-~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.....+. . .|+++|+||+|+.+... +...+ ...++.+++.+++..+.++++++..+...
T Consensus 99 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 99 FLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp HHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 1112222 2 89999999999764221 22222 12345678999998888888777766543
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.37 E-value=2.7e-13 Score=125.78 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccc-cccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+.|+++|++|+|||||+|+|+|..+ +.+.-+ +|+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 40 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEK------------------------------------------ 40 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCC------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceee------------------------------------------
Confidence 6899999999999999999999764 222110 11111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhhH
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSD 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~~ 191 (604)
....+.+ . ...+.+|||||....... . ..+.+...|+. ++|+++++++..+.+ ....
T Consensus 41 ----------~~~~~~~--~-~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~ 99 (165)
T 2wji_A 41 ----------KEGEFEY--N-GEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE-RNLY 99 (165)
T ss_dssp ----------CEEEEEE--T-TEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCHH-HHHH
T ss_pred ----------eEEEEEE--C-CcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCchh-HhHH
Confidence 0001111 1 136899999998764321 1 12345566775 899998887665422 1122
Q ss_pred HHHhh---hcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKIS---RERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~---~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
++... ..|+++|.||+|+..... +...+. ..++..|+.+++.++.++++++..+.
T Consensus 100 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 100 LTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp HHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH----HHhCCCEEEEEcCCCCCHHHHHHHHH
Confidence 22222 388999999999864221 122221 12345788899888888877766543
No 91
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.36 E-value=5.5e-13 Score=129.24 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=66.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.||||||... ...++..|++.+|++|+|++..+.+. . ...++... ..++++|+||+
T Consensus 85 ~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 85 HLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred EEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 589999999533 36678899999999999886554321 1 11233322 26899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
|+.+................+..|+.+++.++.++++++..+.....
T Consensus 152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99764321111111111123456889999888888877776655433
No 92
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=1.4e-12 Score=121.96 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
-.+|++||.+|+|||||+|+|+|..+...+. ..+|+....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~--------------------------------------- 44 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR--------------------------------------- 44 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEE---------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceee---------------------------------------
Confidence 3589999999999999999999976411111 111211100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
. .+.+. ...+.+|||||+..... ......-.....+++.+|++++|++..+.. .....
T Consensus 45 -----------~--~~~~~---~~~~~l~Dt~G~~~~~~-----~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~ 103 (172)
T 2gj8_A 45 -----------E--HIHID---GMPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE 103 (172)
T ss_dssp -----------E--EEEET---TEEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHH
T ss_pred -----------E--EEEEC---CeEEEEEECCCcccchh-----HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH
Confidence 0 11111 12478999999865321 111111122346789999999988765432 22222
Q ss_pred HHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 192 AIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 192 ~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
++... ..|+++|+||+|+.+..... .......|+.+++.++.++++++..+.
T Consensus 104 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------~~~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 104 IWPEFIARLPAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp HCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcccCCCEEEEEECccCCcchhhh-------hhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 22221 26899999999986532211 011234688888888888877766544
No 93
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.36 E-value=4.2e-13 Score=128.61 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~----------------------------------------- 62 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF----------------------------------------- 62 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee-----------------------------------------
Confidence 457899999999999999999999875222111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
....+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 63 -----------~~~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 63 -----------GSRVVNVG-GKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNSLA 117 (200)
T ss_dssp -----------EEEEEEET-TEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEC-CeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00001110 11136899999996432 2345678999999999887655321 1 11
Q ss_pred HHHHhh------hcceeEEEecccCCCCCC-CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
.++... ..++++|+||+|+.+... ...+... .....+..|+.+++.++.++++++..+.....+
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222222 278999999999975432 1111111 111234568999999998888887776655443
No 94
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.36 E-value=2.9e-13 Score=127.19 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=54.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh------hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS------RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~------~~r~i~VltK~D 208 (604)
.+.||||||.... ..++..|++.+|++|+|++..+... . ...++... ..|+++|+||+|
T Consensus 58 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 58 KLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5889999997543 3445678999999999887655321 1 11222222 268999999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 125 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred CCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 976432111111111112345688888888888877776655443
No 95
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.35 E-value=1.6e-12 Score=122.98 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|..|+|||||+|+|++..+.+. ...++.......
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~------------------------------------- 61 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQ------------------------------------- 61 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEE-------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccc-cCCccceEEEEE-------------------------------------
Confidence 346899999999999999999998875322 111111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
+.+. .....+.||||||.... ..+...|++.+|++++|++..+... . ..
T Consensus 62 ---------------~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 112 (190)
T 3con_A 62 ---------------VVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNSKSFADIN 112 (190)
T ss_dssp ---------------EEET-TEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEEC-CEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEEEEEECcCHHHHHHHH
Confidence 0010 01125889999996542 4566789999999998876554321 1 11
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..|+++|+||+|+.+......+... .....+..++.+++.++.++++++..+....
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHE-LAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHH-HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122111 2789999999998764322221111 1112335688888888887777666555433
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=5.6e-13 Score=126.39 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+ ......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~------------------------------------- 55 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVK------------------------------------- 55 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eEEEEE-------------------------------------
Confidence 346899999999999999999999876322211110 000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~ 190 (604)
.+.+. .....+.||||||.... ..++..|++.+|++|+|++..+.+. . ..
T Consensus 56 --------------~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 107 (195)
T 1x3s_A 56 --------------TISVD-GNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYDVTRRDTFVKLD 107 (195)
T ss_dssp --------------EEEET-TEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00010 01125889999997653 2345688999999999886654321 1 11
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.++... ..++++|+||+|+.+......+... .....+..|+.+++.++.++++++..+.....+.
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH-HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 222221 1688999999999544322221111 1112345688899999999888887766555443
No 97
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.35 E-value=9.8e-13 Score=140.31 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..+.|+|+|..|+|||||+|+|+|..+.+.+.. .+|..+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~--------------------------------------- 73 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV--------------------------------------- 73 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCC---------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeE---------------------------------------
Confidence 567999999999999999999999876322211 1111111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhH
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~ 191 (604)
...+...+...+.||||||+.+....++.. ...+..++..+|++|+|++. ........
T Consensus 74 ---------------~~~~~~~~~~~l~liDTpG~~d~~~l~~~~------~~~~~~~l~~aD~vllVvD~-~~~~~~~~ 131 (423)
T 3qq5_A 74 ---------------YKSMELHPIGPVTLVDTPGLDDVGELGRLR------VEKARRVFYRADCGILVTDS-APTPYEDD 131 (423)
T ss_dssp ---------------EEEEEETTTEEEEEEECSSTTCCCTTCCCC------HHHHHHHHTSCSEEEEECSS-SCCHHHHH
T ss_pred ---------------EEEEEECCCCeEEEEECcCCCcccchhHHH------HHHHHHHHhcCCEEEEEEeC-CChHHHHH
Confidence 111222222268999999998754322111 23356789999999998755 33333344
Q ss_pred HHHhhh---cceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 192 AIKISR---ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
++..++ .|+++|+||+|+.+.... +.........+..++.+++.++.++++++..+....
T Consensus 132 ~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 132 VVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444443 899999999999876543 222222234456789999999999998888776654
No 98
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=123.23 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|+|||||+|+|+|...++....+ |.... ..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~~~-~~------------------------------------- 60 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGFS-IE------------------------------------- 60 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSSEE-EE-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-cccee-EE-------------------------------------
Confidence 5679999999999999999999998632332221 11110 00
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
. +... ...+.||||||.... ..++..|++++|++|+|++..+.+ +...
T Consensus 61 --------------~--~~~~-~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 61 --------------K--FKSS-SLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp --------------E--EECS-SCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred --------------E--EEEC-CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0 1111 237899999997553 344568899999999988665432 1111
Q ss_pred HHH----Hh-----hhcceeEEEecccCCCCCC--CHHHHHhCCcc-ccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAI----KI-----SRERTFGVLTKIDLMDKGT--DAADILEGKSY-RLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l----~l-----~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~-~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++ .. ...++++|+||+|+.+... +..+.+..... ..+..|+.+++.++.++++++..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 121 11 2368999999999976432 12222211111 12346788888888888877765543
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.35 E-value=2.1e-12 Score=121.75 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++.. +....+ |.... .
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~-~-------------------------------------- 54 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFN-I-------------------------------------- 54 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEE-E--------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccc-e--------------------------------------
Confidence 45799999999999999999999876 222111 11110 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
. .+.+ +...+.+|||||.... ..++..|++++|++|+|++..+.+ +...
T Consensus 55 -----------~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 55 -----------K--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQ 105 (186)
T ss_dssp -----------E--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEEEEEETTCGGGHHHHH
T ss_pred -----------E--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0 0111 1236899999998542 445678899999999988765542 2211
Q ss_pred HHHH-h------hhcceeEEEecccCCCCCCCHHHHHhCCc----cccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 191 DAIK-I------SRERTFGVLTKIDLMDKGTDAADILEGKS----YRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 191 ~~l~-l------~~~r~i~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.++. . ...|+++|+||+|+.+... ..++..... ...+..|+.+++.++.++++++..+.....+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 1211 1 1278999999999976533 222211111 12234688888888888888877766555443
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.3e-12 Score=124.56 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+.. .+++......
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~-------------------------------------- 67 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLESTYRH-------------------------------------- 67 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCceEEE--------------------------------------
Confidence 4568999999999999999999998762221 1111100000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.+.+ ......+.||||||... ..+...|++.+|++|+|++..+.+ +.. .
T Consensus 68 --------------~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 68 --------------QATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 0001 01112588999999764 245678889999999988765432 111 1
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChh-hhhccccHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQA-DINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~-~i~~~~~~~~~~~ 253 (604)
.++... ..|+++|+||+|+.+.... ..+.. ......+..|+.+++.++. ++++++..+....
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE-KLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH-HHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHH-HHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 111111 2779999999999764321 11111 1111234568888888887 8877776655443
No 101
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=126.55 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------ 60 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAV------------------------------------ 60 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEE------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEE------------------------------------
Confidence 4567999999999999999999999874 333222222111100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~ 190 (604)
+.+. .....+.||||||..... .++..|++++|++|+|++..+.+. ...
T Consensus 61 ----------------~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 61 ----------------VSVD-GRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ----------------EEET-TEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred ----------------EEEC-CEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 0010 011257799999986542 234568899999999887654321 111
Q ss_pred --HHHHhh-----hcceeEEEecccCCCC
Q 007422 191 --DAIKIS-----RERTFGVLTKIDLMDK 212 (604)
Q Consensus 191 --~~l~l~-----~~r~i~VltK~D~~~~ 212 (604)
.++... ..|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 122222 2789999999999753
No 102
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.34 E-value=2.8e-12 Score=121.42 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+. ....+ |..... .
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~-~------------------------------------- 60 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP-TVGFNM-R------------------------------------- 60 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC-CCSEEE-E-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC-CCceeE-E-------------------------------------
Confidence 4568999999999999999999987752 11111 110000 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
. +.. ....+.||||||.... ..++..|++.+|++|+|++..+.+ +...
T Consensus 61 --------------~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 110 (188)
T 1zd9_A 61 --------------K--ITK-GNVTIKLWDIGGQPRF-------------RSMWERYCRGVSAIVYMVDAADQEKIEASK 110 (188)
T ss_dssp --------------E--EEE-TTEEEEEEEECCSHHH-------------HTTHHHHHTTCSEEEEEEETTCGGGHHHHH
T ss_pred --------------E--EEe-CCEEEEEEECCCCHhH-------------HHHHHHHHccCCEEEEEEECCCHHHHHHHH
Confidence 0 111 1236889999997542 456778999999999988765532 1111
Q ss_pred HHH-Hh------hhcceeEEEecccCCCCCCCHHHHHhCCc----cccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAI-KI------SRERTFGVLTKIDLMDKGTDAADILEGKS----YRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l-~l------~~~r~i~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++ .. ...++++|+||+|+.+... ..++..... ......|+.+++.++.++++++..+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 121 11 1278999999999976532 222221111 12234578888888888877666544
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=1.9e-12 Score=123.29 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+ ... .|... ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~t~~~-~~~~------------------------------------ 47 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYI-PTIED-TYRQ------------------------------------ 47 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTS-CCCCE-EEEE------------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-ccc-Ccccc-ceeE------------------------------------
Confidence 45799999999999999999999876521 111 11110 0000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+.+ +.. .
T Consensus 48 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 48 --------------VISC-DKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp --------------EEEE-TTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred --------------EEEE-CCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 0000 011125889999997553 466778899999999988765422 111 1
Q ss_pred HHHHh--------hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKI--------SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l--------~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++.. ...|+++|+||+|+.+......... ......+..|+.+++.++.++++++..+..
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ-AVAQEWKCAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHH-HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHH-HHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence 12211 1268999999999986432221111 111223456888999888888777665543
No 104
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=121.97 Aligned_cols=103 Identities=9% Similarity=0.030 Sum_probs=64.2
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-ch-hhHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~-~~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.+|||||..... ..+...|++.+|++|+|++..+.. +. ...++... ..|+++|.||+
T Consensus 73 ~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 57899999986531 235667889999999988665432 11 11222222 27899999999
Q ss_pred cCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+.... ..+.. ......+..|+.+++.++.++++++..+...
T Consensus 141 Dl~~~~~v~~~~~~-~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 141 DLARSREVSLEEGR-HLAGTLSCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp TCTTTCCSCHHHHH-HHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hccccCCcCHHHHH-HHHHHhCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 99764321 11111 1111234578999999988888777665543
No 105
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.32 E-value=3.2e-12 Score=120.38 Aligned_cols=147 Identities=18% Similarity=0.274 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+++|++|+|||||+|+|++..+-.. .+|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~---~~t~------------------------------------------- 48 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI---TPTQ------------------------------------------- 48 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE---EEET-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc---cCcC-------------------------------------------
Confidence 568999999999999999999998754100 0010
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
| +... .+.+ . ...+.++||||.... ..++..|++.+|++++|++..+.+ +.. .
T Consensus 49 ---g----~~~~--~~~~--~-~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 103 (181)
T 1fzq_A 49 ---G----FNIK--SVQS--Q-GFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIYVIDSADRKRFEETG 103 (181)
T ss_dssp ---T----EEEE--EEEE--T-TEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEEEEETTCGGGHHHHH
T ss_pred ---C----eEEE--EEEE--C-CEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHHHH
Confidence 0 0000 1111 1 236889999997553 566788999999999988765532 211 1
Q ss_pred HHHH-h------hhcceeEEEecccCCCCCCCHHHHHh--CC--ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIK-I------SRERTFGVLTKIDLMDKGTDAADILE--GK--SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~-l------~~~r~i~VltK~D~~~~~~~~~~~l~--~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++. + ...|+++|+||+|+.+... ..++.+ +. .......|+.+++.++.++++++..+..
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 2221 1 1278999999999976543 222211 11 1112345788888888888877765543
No 106
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.32 E-value=1.2e-12 Score=124.56 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 63 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHV------------------------------------- 63 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE-------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEE-------------------------------------
Confidence 346899999999999999999999875 322222211110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-- 189 (604)
+.+ ......+.||||||.... ..+...|++++|++|+|++..+... ..
T Consensus 64 ---------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 64 ---------------MKY-KNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114 (194)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHH
Confidence 000 011124789999996553 3445678999999999886654321 11
Q ss_pred hHHHHhhh-----cceeEEEecccCCCCCCC--HHHHHhCCccccCCC-EEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKISR-----ERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~~-----~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 251 (604)
..++.... .|+++|+||+|+.+.... ..+.........+.. |+.+++.++.++++++..+..
T Consensus 115 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 115 TKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp HTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 11222222 789999999999864211 111111111223344 889999988888877765543
No 107
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.32 E-value=7e-13 Score=127.08 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=53.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh---------hcceeEEEe
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS---------RERTFGVLT 205 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~---------~~r~i~Vlt 205 (604)
.+.||||||.... ..++..|++.+|++|+|++..+... . ...++... ..|+++|+|
T Consensus 74 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 74 ELFLLDTAGSDLY-------------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp EEEEEETTTTHHH-------------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred EEEEEECCCcHHH-------------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence 6899999998542 5677889999999999887654321 1 11222221 368999999
Q ss_pred cccCCC-CCCC-HHHHHhCCccccCCCEEEEEeCC-hhhhhccccHHH
Q 007422 206 KIDLMD-KGTD-AADILEGKSYRLKFPWIGVVNRS-QADINKNVDMIA 250 (604)
Q Consensus 206 K~D~~~-~~~~-~~~~l~~~~~~l~~g~~~v~~~s-~~~i~~~~~~~~ 250 (604)
|+|+.+ .... ..+. ......++..|+.+++.+ +.++++++..+.
T Consensus 141 K~Dl~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~ 187 (208)
T 2yc2_C 141 KTDLPPQRHQVRLDMA-QDWATTNTLDFFDVSANPPGKDADAPFLSIA 187 (208)
T ss_dssp CC-------CCCHHHH-HHHHHHTTCEEEECCC-------CHHHHHHH
T ss_pred CcccchhhccCCHHHH-HHHHHHcCCEEEEeccCCCCcCHHHHHHHHH
Confidence 999976 3221 1111 111112335677787777 777666555443
No 108
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.31 E-value=1.9e-12 Score=125.89 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=66.6
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-c-hhhHHHHhhh------cceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKISR------ERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~-~~~~~l~l~~------~r~i~VltK~D 208 (604)
.+.||||+|..+. ..+...|++.++++|+|.+..+.+ + ....++.... .++++|.||+|
T Consensus 63 ~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 5789999997654 556788999999999988655432 1 1123333222 68899999999
Q ss_pred CCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 209 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
+.+...-..+-........+..|+.+++.++.++++++..+.+
T Consensus 130 l~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 8764321111111112234467999999999988887765544
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.31 E-value=3.4e-12 Score=123.32 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|++|+|||||+++|++..+ +.... +|... .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~-~~~~~-~--------------------------------------- 43 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQT-SITDS-S--------------------------------------- 43 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCC-CCSCE-E---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccC-Cccee-e---------------------------------------
Confidence 468999999999999999999998875 22211 11100 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHH-HHHHhhcCCCeEEEEEecCCCcchhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN-MVRSYIEKPNCIILAISPANQDLATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~-~~~~~i~~~d~iIl~v~~a~~d~~~~- 190 (604)
..+.+.+.....+.||||||.... .. ++..|++.+|++|+|++..+......
T Consensus 44 -------------~~~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 44 -------------AIYKVNNNRGNSLTLIDLPGHESL-------------RFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp -------------EEEECSSTTCCEEEEEECCCCHHH-------------HHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred -------------EEEEecCCCccEEEEEECCCChhH-------------HHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 001111111236899999998542 33 67789999999999887655211111
Q ss_pred --HHHH-h--------hhcceeEEEecccCCCCC
Q 007422 191 --DAIK-I--------SRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 --~~l~-l--------~~~r~i~VltK~D~~~~~ 213 (604)
..+. . ...|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 1111 1 126899999999998654
No 110
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.31 E-value=2.7e-12 Score=120.70 Aligned_cols=146 Identities=12% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|.+|+|||||+|+|++..+ . ... .|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~~-~t------------------------------------------- 52 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-V-HTS-PT------------------------------------------- 52 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-E-EEE-CC-------------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-C-ccC-Cc-------------------------------------------
Confidence 3567899999999999999999999875 1 000 00
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~ 190 (604)
.++.. ..+.+ +...+.||||||.... ..++..|++.+|++|+|++..+.. +...
T Consensus 53 -------~~~~~--~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~ 107 (181)
T 2h17_A 53 -------IGSNV--EEIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRERISVT 107 (181)
T ss_dssp -------SSSSC--EEEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCTTTHHHH
T ss_pred -------Cceee--EEEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 00111 11112 1246899999998654 234568899999999988765542 2211
Q ss_pred -HHH-Hh------hhcceeEEEecccCCCCCCCHHHHHh--CCc--cccCCCEEEEEeCChhhhhccccHH
Q 007422 191 -DAI-KI------SRERTFGVLTKIDLMDKGTDAADILE--GKS--YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 -~~l-~l------~~~r~i~VltK~D~~~~~~~~~~~l~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.++ .. ...++++|+||+|+.+... ..++.. +.. ...+..|+.+++.++.++++++..+
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 111 11 2278999999999976432 222211 111 1123357888888888877665543
No 111
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.31 E-value=6e-13 Score=138.26 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
+|.|++||.+|||||||+|+|++.+........+|..|+.-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 578999999999999999999987632222223444442111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---Cc-chh
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QD-LAT 189 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~---~d-~~~ 189 (604)
+..++...++|+||||+........ .+ .......++.+|++|+|++.++ .+ +..
T Consensus 200 ----------------v~~~~~~~~~l~DtPG~i~~a~~~~--~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 200 ----------------VETDDGRSFVMADLPGLIEGAHQGV--GL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ----------------EECSSSCEEEEEEHHHHHHHTTCTT--TT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ----------------EEeCCCceEEEecCCCCcccccccc--hh----HHHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 1112223689999999865332211 11 1223455667999999887765 22 111
Q ss_pred hH-H---HHh-----hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 190 SD-A---IKI-----SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 190 ~~-~---l~l-----~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.+ + +.. ...|+++|+||+|+.+.......+... ......++.+++.+..++++++..+....
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 11 1 111 238899999999997643222222211 11114678888888888888777665544
No 112
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.31 E-value=5.4e-13 Score=129.81 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=67.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h-hhHHHHhh-----hcceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIKIS-----RERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~-~~~~l~l~-----~~r~i~VltK~D~ 209 (604)
.+.||||||.... ..+...|++++|++|+|++..+... . ...++... ..|+++|+||+|+
T Consensus 65 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 65 KFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcc
Confidence 5889999997553 2334578899999999886654321 1 11222222 2789999999999
Q ss_pred CCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 210 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 210 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.+..... + ........+..|+.+++.++.++++++..+.....+.
T Consensus 132 ~~~~~~~-~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 132 KDRKVKA-K-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp SSCSSCG-G-GCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred ccccccH-H-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 7654321 1 1111122345789999999999988887776655443
No 113
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=3.6e-12 Score=119.59 Aligned_cols=151 Identities=16% Similarity=0.211 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|||||||+|+|++..+.+.. .|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t-------------------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK---PT-------------------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC---SS--------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC---Cc--------------------------------------------
Confidence 4679999999999999999999986641100 00
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.++.. ..+.+ +...+.++||||.... ..++..|++.+|++|+|++..+.. +.. .
T Consensus 50 ------~~~~~--~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 105 (183)
T 1moz_A 50 ------IGFNV--ETLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDKDRMSTAS 105 (183)
T ss_dssp ------TTCCE--EEEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCTTTHHHHH
T ss_pred ------Cccce--EEEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00110 01111 1236899999998653 223467889999999988765442 111 1
Q ss_pred HHHH-h------hhcceeEEEecccCCCCCC--CHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 191 DAIK-I------SRERTFGVLTKIDLMDKGT--DAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 191 ~~l~-l------~~~r~i~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
.++. . ...|+++|+||+|+.+... +..+.+... .......|+.+++.++.++++++..+.....
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 2221 1 1278999999999976432 122222111 1112235788888888888887776655443
No 114
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.31 E-value=1.9e-12 Score=122.79 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=65.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc----chh----hHHHHhh-----hcceeEE
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD----LAT----SDAIKIS-----RERTFGV 203 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d----~~~----~~~l~l~-----~~r~i~V 203 (604)
.+.||||||.... ..+...|++++|++|+|++..+.. ... ..++... ..|+++|
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 75 RFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp EEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred EEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 5889999997653 456778999999999988765321 111 1122222 2789999
Q ss_pred EecccCCCCCC--CHHHHHhCCccccCC-CEEEEEeCChhhhhccccHHHHHH
Q 007422 204 LTKIDLMDKGT--DAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 204 ltK~D~~~~~~--~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+||+|+.+... +..+.+ ...+. .|+.+++.++.++++++..+....
T Consensus 142 ~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 142 VNKRDLPDALPVEMVRAVV----DPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp EECTTSTTCCCHHHHHHHH----CTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred EEchhcccccCHHHHHHHH----HhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 99999976532 122222 12344 788899888888887776655443
No 115
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.30 E-value=1.2e-12 Score=123.92 Aligned_cols=149 Identities=18% Similarity=0.274 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +. .. +|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~-~t~~------------------------------------------ 55 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT-TV-PTVG------------------------------------------ 55 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE-EC-SSTT------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC-cC-CCCc------------------------------------------
Confidence 467999999999999999999988765 21 10 1110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
+... .+.+ +...+.+|||||...... ++..|++.+|++|+|++..+.+ +.. .
T Consensus 56 --------~~~~--~~~~---~~~~~~~~Dt~G~~~~~~-------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 56 --------VNLE--TLQY---KNISFEVWDLGGQTGVRP-------------YWRCYFSDTDAVIYVVDSTDRDRMGVAK 109 (189)
T ss_dssp --------CCEE--EEEE---TTEEEEEEEECCSSSSCC-------------CCSSSSTTCCEEEEEEETTCCTTHHHHH
T ss_pred --------eEEE--EEEE---CCEEEEEEECCCCHhHHH-------------HHHHHhhcCCEEEEEEeCCCHHHHHHHH
Confidence 0000 1111 123689999999865422 2346788999999988765542 221 1
Q ss_pred HHH-Hhh------hcceeEEEecccCCCCCCCHHHHHh--CC--ccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAI-KIS------RERTFGVLTKIDLMDKGTDAADILE--GK--SYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l-~l~------~~r~i~VltK~D~~~~~~~~~~~l~--~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
..+ ... ..|+++|+||+|+.+... ..++.. +. ....+..|+.+++.++.++++++..+....
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 122 111 278999999999976532 222211 11 111233578888888888887776665443
No 116
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.30 E-value=9.7e-12 Score=118.60 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....+|+|+|+.|+|||||+|.+.|. +.+..+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~---------------------------------------------- 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETL---------------------------------------------- 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGG----------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCccee----------------------------------------------
Confidence 36789999999999999999999985 3222110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHH---HHhhcCCCeEEEEEecCCCcch
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV---RSYIEKPNCIILAISPANQDLA 188 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~---~~~i~~~d~iIl~v~~a~~d~~ 188 (604)
+..+....+...+.+.....+.||||||...... +. ..|++++|++|+|++..+.-..
T Consensus 51 ------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~ 111 (196)
T 3llu_A 51 ------FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD-------------PTFDYEMIFRGTGALIYVIDAQDDYME 111 (196)
T ss_dssp ------GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC-------------TTCCHHHHHHTCSEEEEEEETTSCCHH
T ss_pred ------eeccccceeeeeccCCCeeEEEEEECCCCHHHHh-------------hhhhcccccccCCEEEEEEECCCchHH
Confidence 0111122222233333445899999999765321 22 5788999999998876654111
Q ss_pred h-h---HHHHhh-----hcceeEEEecccCCCCCCC------H-----HHHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 189 T-S---DAIKIS-----RERTFGVLTKIDLMDKGTD------A-----ADILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 189 ~-~---~~l~l~-----~~r~i~VltK~D~~~~~~~------~-----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
. . .++... ..++++|.||+|+.++... . ..+........+..|+.+++.+ .++++++..
T Consensus 112 ~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 112 ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 1 1 222222 2789999999998763211 0 1111111113445788999988 888776654
Q ss_pred HH
Q 007422 249 IA 250 (604)
Q Consensus 249 ~~ 250 (604)
+.
T Consensus 191 l~ 192 (196)
T 3llu_A 191 VV 192 (196)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 117
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=124.74 Aligned_cols=151 Identities=14% Similarity=0.199 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 74 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVN------------------------------------- 74 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEE-------------------------------------
Confidence 345899999999999999999999775 332222111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
+.+.+ ....+.||||||.... ..+...|++.+|++|+|++..+.+ +...
T Consensus 75 ---------------~~~~~-~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (214)
T 2j1l_A 75 ---------------LQVKG-KPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLLCFDVTSPNSFDNIF 125 (214)
T ss_dssp ---------------EEETT-EEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEECC-EEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00100 1125889999996543 455667899999999988655432 1111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCCCCHHHHH-------------hCCccccCC-CEEEEEeCChhhhhccccHHH
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKGTDAADIL-------------EGKSYRLKF-PWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l-------------~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+... ..+.+ .......+. .|+.+++.++.++++++..+.
T Consensus 126 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 126 NRWYPEVNHFCKKVPIIVVGCKTDLRKDKS-LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp HTHHHHHHHHCSSCCEEEEEECGGGGSCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEEChhhhccch-hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 122222 278999999999986431 11110 000111233 567777777777666665544
Q ss_pred H
Q 007422 251 A 251 (604)
Q Consensus 251 ~ 251 (604)
.
T Consensus 205 ~ 205 (214)
T 2j1l_A 205 E 205 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.29 E-value=2.3e-12 Score=123.45 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++.....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 63 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYI--------------------------------------- 63 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEE---------------------------------------
Confidence 345899999999999999999998875 3222111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-- 189 (604)
..+.+. .....+.||||||.... ..+...|++.+|++|+|++..+.. +..
T Consensus 64 -------------~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 116 (201)
T 2gco_A 64 -------------ADIEVD-GKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIP 116 (201)
T ss_dssp -------------EEEEET-TEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEEC-CEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHH
Confidence 001110 01125889999997553 233456899999999987655432 111
Q ss_pred hHHHHhh-----hcceeEEEecccCCCC
Q 007422 190 SDAIKIS-----RERTFGVLTKIDLMDK 212 (604)
Q Consensus 190 ~~~l~l~-----~~r~i~VltK~D~~~~ 212 (604)
..++... ..|+++|+||+|+.+.
T Consensus 117 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 117 EKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp HTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 1122222 2789999999999865
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.29 E-value=1.9e-12 Score=121.62 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 45 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN-------------------------------------- 45 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEE--------------------------------------
Confidence 45899999999999999999998765 222211111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-- 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-- 190 (604)
+.+. .....+.+|||||.... ..+...|++.+|++|+|++..+.. +...
T Consensus 46 --------------~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 46 --------------VMVD-GKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp --------------EEET-TEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEEC-CEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 0010 11125789999998654 234456889999999988765432 1111
Q ss_pred HHHHhh-----hcceeEEEecccCCCCCCCHHHHH------------hCCccccCC-CEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS-----RERTFGVLTKIDLMDKGTDAADIL------------EGKSYRLKF-PWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l------------~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+.......+. .......+. .|+.+++.++.++++++..+.
T Consensus 98 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (186)
T 1mh1_A 98 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175 (186)
T ss_dssp THHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHH
Confidence 122222 378999999999976421100000 000011232 677888887777776665544
No 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=9.9e-13 Score=124.12 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|+.|+|||||+|+|+|..+.+.....+|..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~-------------------------------------- 47 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG-------------------------------------- 47 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEE--------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEE--------------------------------------
Confidence 457899999999999999999999764221111111111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~~ 190 (604)
. +... ...+.+|||||....... . .-+.+...|+. .+|+++++++..+.+ ...
T Consensus 48 --------------~--~~~~-~~~~~l~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~ 102 (188)
T 2wjg_A 48 --------------E--FEYN-GEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE-RNL 102 (188)
T ss_dssp --------------E--EEET-TEEEEEEECCCCSCCSSS----S---HHHHHHHHHHHHHCCSEEEEEEEGGGHH-HHH
T ss_pred --------------E--EEeC-CcEEEEEECCCcCccccc----c---HHHHHHHHHHhccCCCEEEEEecchhHH-HHH
Confidence 1 1111 136889999998765321 1 11344556664 589888877654421 111
Q ss_pred HHHHhh---hcceeEEEecccCCCCCC---CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS---RERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~---~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..|+++|+||+|+..... ....+. ..++..|+.+++.++.++++++..+....
T Consensus 103 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 103 YLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp HHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH----HHhCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 222222 278999999999864321 222221 12345789999888888887777665443
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=4.1e-12 Score=120.68 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 58 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVS-------------------------------------- 58 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEE--------------------------------------
Confidence 45899999999999999999998765 332222222111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-- 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-- 190 (604)
+.+. .....+.||||||..+. ..+...|++.+|++|+|++..+.+ +...
T Consensus 59 --------------~~~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (194)
T 2atx_A 59 --------------VTVG-GKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110 (194)
T ss_dssp --------------EESS-SCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEEC-CEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 0000 01125789999998654 234567899999999988765432 1111
Q ss_pred HHHHhh-----hcceeEEEecccCCCC
Q 007422 191 DAIKIS-----RERTFGVLTKIDLMDK 212 (604)
Q Consensus 191 ~~l~l~-----~~r~i~VltK~D~~~~ 212 (604)
.++... ..|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 111 EWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp THHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 122222 2789999999999764
No 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.28 E-value=5.5e-12 Score=120.04 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+|+|++..+ +. . .+|.....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~-~-~~t~~~~~--------------------------------------- 65 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT-T-IPTIGFNV--------------------------------------- 65 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE-E-EEETTEEE---------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc-c-CCcCceeE---------------------------------------
Confidence 457899999999999999999998775 21 1 11111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.. +.. ....+.+|||||.... ..++..|++.+|++|+|++..+.+ +.. .
T Consensus 66 -------------~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 116 (192)
T 2b6h_A 66 -------------ET--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVQESA 116 (192)
T ss_dssp -------------EE--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHH
T ss_pred -------------EE--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 111 1236899999998543 334667889999999988765432 111 1
Q ss_pred HHHHh-h------hcceeEEEecccCCCCCCCHHHHHh--CCc--cccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKI-S------RERTFGVLTKIDLMDKGTDAADILE--GKS--YRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l-~------~~r~i~VltK~D~~~~~~~~~~~l~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++.. . ..|+++|+||+|+.+... ..++.. +.. ...+.+|+.+++.++.++++++..+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 22211 1 278999999999976432 222221 111 11234578888888888877666554
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.3e-12 Score=127.52 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 50 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF----------------------------------------- 50 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSE-----------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 457999999999999999999999876222111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~ 190 (604)
....+.+. .....+.||||||.... ..++..|++.+|++|+|++..+... .. .
T Consensus 51 -----------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 51 -----------ATRTLEIE-GKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISKSSSYENCN 105 (223)
T ss_dssp -----------EEEEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHH
T ss_pred -----------EEEEEEEC-CEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 00011111 01125889999997553 2335678899999998876544321 11 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+.... ..+.. ......+..|+.+++.++.++++++..+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESK-TFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHH-HHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 222222 2789999999999753321 11111 01112334677788877777776665544
No 124
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=2.1e-12 Score=124.30 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|+|.+|+|||||+|+|++..+ +....+++......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 64 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVA--------------------------------------- 64 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C-------CCEEEE---------------------------------------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccceEEE---------------------------------------
Confidence 35899999999999999999999875 22211111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh--
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-- 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-- 190 (604)
.+.+.+ ....+.||||||.... ..+...|++.+|++|+|++..+.+ +...
T Consensus 65 -------------~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (207)
T 2fv8_A 65 -------------DIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117 (207)
T ss_dssp -------------EEEETT-EEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 000100 1125889999997654 234457889999999988655432 1111
Q ss_pred HHHHhh-----hcceeEEEecccCCCCCCCHHHHHhC---C----------ccccCC-CEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIKIS-----RERTFGVLTKIDLMDKGTDAADILEG---K----------SYRLKF-PWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l~~---~----------~~~l~~-g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.++... ..|+++|+||+|+.+... ..+.+.. . ....+. .|+.+++.++.++++++..+..
T Consensus 118 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 118 KWVPEVKHFCPNVPIILVANKKDLRSDEH-VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196 (207)
T ss_dssp THHHHHHHHSTTCCEEEEEECGGGGGCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEchhhhcccc-chhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 122222 378999999999976421 1111100 0 001122 5677777777777666655443
No 125
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.27 E-value=1.1e-11 Score=117.70 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+|+|++..+-.. .+|..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~~--------------------------------------- 59 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPTS--------------------------------------- 59 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCEE---------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCCe---------------------------------------
Confidence 456999999999999999999998775111 11211110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
-.+.+ .+ ..+.++||||.... +.+...|++.+|++|+|++..+.+ +.. .
T Consensus 60 -------------~~~~~--~~-~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 60 -------------EELAI--GN-IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPERFDEAR 110 (190)
T ss_dssp -------------EEEEE--TT-EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGGHHHHH
T ss_pred -------------EEEEE--CC-EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHHHHHHH
Confidence 01111 11 36889999998654 234567889999999988766543 111 1
Q ss_pred HHHH-h------hhcceeEEEecccCCCCCC--CHHHHHhCCc--------cccCCCEEEEEeCChhhhhccccHH
Q 007422 191 DAIK-I------SRERTFGVLTKIDLMDKGT--DAADILEGKS--------YRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l~-l------~~~r~i~VltK~D~~~~~~--~~~~~l~~~~--------~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.++. . ...|+++|+||+|+.+... +..+.+.... ......|+.+++.++.++++++..+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 1111 1 1278999999999976322 1222221110 0123458888888888877666543
No 126
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=120.40 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 61 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSE------------------------------------- 61 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEE-------------------------------------
Confidence 345899999999999999999998875 322222221110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
+.+ ......+.||||||..... .+ ..|++.+|++|+|++..+.+ +.. .
T Consensus 62 ---------------~~~-~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~ 111 (187)
T 3c5c_A 62 ---------------ETV-DHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQSFDSSS 111 (187)
T ss_dssp ---------------EEE-TTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 001 0111257899999975431 11 36889999999988665432 111 1
Q ss_pred HHHHh---------hhcceeEEEecccCCCCCCC-HHHHHhCCccccCCCEEEEEe-CChhhhhccccHHHH
Q 007422 191 DAIKI---------SRERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVN-RSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~l---------~~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~-~s~~~i~~~~~~~~~ 251 (604)
.++.. ...++++|+||+|+.+.... ..+. .......+..|+.+++ .++.++++++..+..
T Consensus 112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 112 SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG-VALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH-HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH-HHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 12221 13789999999999653321 1111 1111223457889998 788888877765544
No 127
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.26 E-value=4e-12 Score=123.32 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=92.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|..|+|||||+|+|++..+ +....+++......
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 66 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTA-------------------------------------- 66 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEE--------------------------------------
Confidence 557899999999999999999998875 22211111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-h--h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-A--T 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~--~ 189 (604)
.+.+.+ ....+.||||||.... ..+...|++.+|++|+|++..+... . .
T Consensus 67 --------------~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 67 --------------CLETEE-QRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp --------------EEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred --------------EEEECC-EEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 000101 1125889999997654 3345678999999999887665421 1 1
Q ss_pred hHHHHhhh-----cceeEEEecccCCCCC------------CCHHHHHhCCccccCC-CEEEEEeCChhh-hhccccHHH
Q 007422 190 SDAIKISR-----ERTFGVLTKIDLMDKG------------TDAADILEGKSYRLKF-PWIGVVNRSQAD-INKNVDMIA 250 (604)
Q Consensus 190 ~~~l~l~~-----~r~i~VltK~D~~~~~------------~~~~~~l~~~~~~l~~-g~~~v~~~s~~~-i~~~~~~~~ 250 (604)
..++.... .|+++|.||+|+.+.. ....+.........+. .|+.+++.++.+ +++++..+.
T Consensus 119 ~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 119 KKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp THHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHH
Confidence 23333332 7899999999997531 1001111111122344 688888888887 887776655
Q ss_pred HHH
Q 007422 251 ARR 253 (604)
Q Consensus 251 ~~~ 253 (604)
...
T Consensus 199 ~~~ 201 (214)
T 3q3j_B 199 MLC 201 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 128
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.26 E-value=1.7e-13 Score=131.14 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+........|......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 73 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-------------------------------------- 73 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEE--------------------------------------
Confidence 456999999999999999999999875222111111111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATS 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~ 190 (604)
.+.+. .....+.||||||..... .++..|++.+|++|+|++..+.+. ...
T Consensus 74 --------------~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 74 --------------TIELD-GKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp --------------EEEET-TEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred --------------EEEEC-CEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 00110 011258899999975542 224468899999999876555321 112
Q ss_pred HHHHhhh------cceeEEEecccCCCCCC----CHHHHHhCCccccCCCEEEEEeCChhhhhccccHH
Q 007422 191 DAIKISR------ERTFGVLTKIDLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 ~~l~l~~------~r~i~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.++.... .++++|+||+|+.+... ....+. ...+..|+.+++.++.++++++..+
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----DSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH----HTTTCCBCCCCC---HHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHH
Confidence 2332222 78999999999975432 112221 1234568888888888877665543
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.26 E-value=7.6e-12 Score=119.73 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+++|++|||||||+|+|.+..+ +. -.+|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 457899999999999999999998765 11 0011111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
. .-.+.+. + ..+.+|||||.... +.++..|++.+|++|+|++..+.+ +.. .
T Consensus 60 ---------~--~~~~~~~--~-~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 112 (198)
T 1f6b_A 60 ---------T--SEELTIA--G-MTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHERLLESK 112 (198)
T ss_dssp ---------S--CEEEEET--T-EEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHH
T ss_pred ---------e--eEEEEEC--C-EEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0 0111121 1 36899999997543 234567899999999988765542 111 1
Q ss_pred HHHHh-------hhcceeEEEecccCCCCCC--CHHHHHhCCc---------c----ccCCCEEEEEeCChhhhhccccH
Q 007422 191 DAIKI-------SRERTFGVLTKIDLMDKGT--DAADILEGKS---------Y----RLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 191 ~~l~l-------~~~r~i~VltK~D~~~~~~--~~~~~l~~~~---------~----~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
.++.. ...|+++|+||+|+.+... +..+.+.... . .....|+.+++.++.++++++..
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 192 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 192 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHH
Confidence 22211 1278999999999975321 1222222110 0 12245888888888888776654
Q ss_pred H
Q 007422 249 I 249 (604)
Q Consensus 249 ~ 249 (604)
+
T Consensus 193 l 193 (198)
T 1f6b_A 193 M 193 (198)
T ss_dssp H
T ss_pred H
Confidence 4
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.26 E-value=1.1e-12 Score=123.00 Aligned_cols=149 Identities=20% Similarity=0.166 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|++++..+ +....+++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~----------------------------------------- 44 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDN----------------------------------------- 44 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeee-----------------------------------------
Confidence 457999999999999999999998764 22211111000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~- 190 (604)
. ...+. + ......+.||||||.... ..++..|++.+|++|+|++..+.+. ...
T Consensus 45 -~---~~~~~-------~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 45 -F---SANVV-------V-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVS 99 (182)
T ss_dssp -C---BCCCC---------------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred -E---EEEEE-------E-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0 00000 0 011236889999997553 2345678899999999887654321 111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCCCC-----------HHHHHhCCccccCC-CEEEEEeCChhhhhccccHH
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKGTD-----------AADILEGKSYRLKF-PWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~~~-----------~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 249 (604)
.++... ..|+++|+||+|+.+.... ..+. .......+. +|+.+++.++.++++++..+
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 100 KKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-EELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHH-HHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHH-HHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 122222 2789999999998764210 0000 000111232 57777777777766655544
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.26 E-value=2.5e-11 Score=127.31 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHhhhhCCCCCccc-ccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHh
Q 007422 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (604)
Q Consensus 32 ~~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (604)
...+.|+|+|.+|+|||||+|+|+|..+ ..+ ...+|+.+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~----------------------------------- 208 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ----------------------------------- 208 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEE-----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEE-----------------------------------
Confidence 3678999999999999999999999863 222 112232221111
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC---cc
Q 007422 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---DL 187 (604)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~---d~ 187 (604)
+... ...+.++||||+....... ........+..+...+|++++|++..+. +.
T Consensus 209 -------------------~~~~-~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~ 264 (357)
T 2e87_A 209 -------------------FEDG-YFRYQIIDTPGLLDRPISE----RNEIEKQAILALRYLGNLIIYIFDPSEHCGFPL 264 (357)
T ss_dssp -------------------EEET-TEEEEEEECTTTSSSCSTT----SCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCH
T ss_pred -------------------EEec-CceEEEEeCCCccccchhh----hhHHHHHHHHHHHhcCCEEEEEEeCCccccCCH
Confidence 1111 2258899999997643321 1111123344555679999888875443 23
Q ss_pred hhh-HHHHh----h-hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 188 ATS-DAIKI----S-RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 188 ~~~-~~l~l----~-~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
..+ .++.. . ..++++|+||+|+.+... ..+... .....+.+++.+++.++.++++++..+...
T Consensus 265 ~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~-~~~~~~-~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~ 333 (357)
T 2e87_A 265 EEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN-IKRLEK-FVKEKGLNPIKISALKGTGIDLVKEEIIKT 333 (357)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH-HHHHHH-HHHHTTCCCEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcccCChHH-HHHHHH-HHHhcCCCeEEEeCCCCcCHHHHHHHHHHH
Confidence 322 22222 2 388999999999876432 111111 011233567888888877777776655443
No 132
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.24 E-value=4.1e-12 Score=119.77 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+|+|++..+ +....+ |.......
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~-t~~~~~~~------------------------------------- 46 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFENYTA------------------------------------- 46 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEE-------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ccceeEEE-------------------------------------
Confidence 346899999999999999999998875 322111 11110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-- 189 (604)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ..
T Consensus 47 --------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 98 (184)
T 1m7b_A 47 --------------SFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 98 (184)
T ss_dssp --------------EEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHH
Confidence 0000 011125789999997553 2234568899999999886654321 11
Q ss_pred hHHHHhh-----hcceeEEEecccCCCCCC-------------CHHHHHhCCccccC-CCEEEEEeC-ChhhhhccccHH
Q 007422 190 SDAIKIS-----RERTFGVLTKIDLMDKGT-------------DAADILEGKSYRLK-FPWIGVVNR-SQADINKNVDMI 249 (604)
Q Consensus 190 ~~~l~l~-----~~r~i~VltK~D~~~~~~-------------~~~~~l~~~~~~l~-~g~~~v~~~-s~~~i~~~~~~~ 249 (604)
..++... ..|+++|+||+|+.+... ...+. ......++ .+|+.+++. ++.++++++..+
T Consensus 99 ~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 99 KKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG-ANMAKQIGAATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp HTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH-HHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHH-HHHHHHcCCcEEEEeeecCCCcCHHHHHHHH
Confidence 1122221 278999999999975311 01100 00001122 467788887 567777666544
Q ss_pred H
Q 007422 250 A 250 (604)
Q Consensus 250 ~ 250 (604)
.
T Consensus 178 ~ 178 (184)
T 1m7b_A 178 T 178 (184)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.24 E-value=2.2e-12 Score=124.51 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+++|++..+ +....+++.......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 49 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSAN------------------------------------- 49 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEE-------------------------------------
Confidence 446899999999999999999998765 332222221111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
+.+ ......+.||||||.... ..++..|++++|++|+|++..+.+ +...
T Consensus 50 ---------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 100 (212)
T 2j0v_A 50 ---------------VAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVL 100 (212)
T ss_dssp ---------------EEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 001 011126889999998654 224456899999999988665432 1111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCCC---------CHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHH
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKGT---------DAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~~---------~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+... ...+. ......++ ..|+.+++.++.++++++..+.
T Consensus 101 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 101 KKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQG-EELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp HTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHH-HHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHH-HHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 222222 278999999999876421 01100 00011122 2566666666666665555443
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.24 E-value=3.2e-11 Score=121.42 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 81 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS------------------------------------ 81 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE------------------------------------
Confidence 457999999999999999999999887444432 2333332221
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCCcchh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i--~~~d~iIl~v~~a~~d~~~ 189 (604)
+.. +...++||||||+.+... ........+..|+ ..+|++++|+......+..
T Consensus 82 ------------------~~~-~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~ 136 (270)
T 1h65_A 82 ------------------RSR-AGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN 136 (270)
T ss_dssp ------------------EEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCH
T ss_pred ------------------Eee-CCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCH
Confidence 111 122689999999976432 1122233344454 3689998886543323322
Q ss_pred --hHHHHhhh--------cceeEEEecccCCCCC
Q 007422 190 --SDAIKISR--------ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 190 --~~~l~l~~--------~r~i~VltK~D~~~~~ 213 (604)
..++.... .++++|+||+|+.++.
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 23333322 4899999999987643
No 135
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.23 E-value=1.8e-11 Score=114.34 Aligned_cols=145 Identities=10% Similarity=0.111 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+|++++..+-+ ..+ |-......
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~------------------------------------- 45 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKK------------------------------------- 45 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEE-------------------------------------
Confidence 34589999999999999999999987632 111 11000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
.+.+.+ ....+.+|||||... ..|++++|++|+|++..+.. +...
T Consensus 46 --------------~~~~~~-~~~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~s~~~~~ 92 (178)
T 2iwr_A 46 --------------EMLVDG-QTHLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDENSFQAVS 92 (178)
T ss_dssp --------------EEEETT-EEEEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEECC-EEEEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHHHHHHHH
Confidence 011111 112578999999643 35788899999988765432 1111
Q ss_pred HH---HHhh------hcceeEEEecccCCCCCC---CHHHHHhCCcccc-CCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DA---IKIS------RERTFGVLTKIDLMDKGT---DAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~---l~l~------~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+ +... ..|+++|.||+|+.+... ...+... ..... +..|+.+++.++.++++++..+..
T Consensus 93 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 93 RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-LXADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHH-HHHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHH-HHHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 11 2211 268999999999853211 1111110 00111 356888888888888777665543
No 136
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.23 E-value=4.3e-12 Score=122.00 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||++++++..+ +.....++.......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 70 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 70 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEE-------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEE-------------------------------------
Confidence 456899999999999999999997765 222212221110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~- 190 (604)
+.+. .....+.||||||.... ..+...|++.+|++|+|++..+... ...
T Consensus 71 ---------------~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 71 ---------------VMVD-GKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
T ss_dssp ---------------EECC--CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEEC-CEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0000 01124679999998654 3345678999999999886654321 111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCC
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKG 213 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~ 213 (604)
.++... ..|+++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHCSSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhccch
Confidence 122222 27899999999998653
No 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.22 E-value=7.3e-12 Score=120.67 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +.... .|.......
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~~~------------------------------------- 67 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTA------------------------------------- 67 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CccceeEEE-------------------------------------
Confidence 446899999999999999999999875 32211 111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh--
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-- 189 (604)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ..
T Consensus 68 --------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 68 --------------SFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 119 (205)
T ss_dssp --------------EEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0000 011125889999997553 2234568899999999887654321 11
Q ss_pred hHHHHhh-----hcceeEEEecccCCC
Q 007422 190 SDAIKIS-----RERTFGVLTKIDLMD 211 (604)
Q Consensus 190 ~~~l~l~-----~~r~i~VltK~D~~~ 211 (604)
..++... ..|+++|+||+|+.+
T Consensus 120 ~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 120 KKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp HTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 1122222 278999999999975
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.84 E-value=1.4e-12 Score=125.15 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|+|++..+ +.....++....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 67 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNY---------------------------------------- 67 (204)
Confidence 457899999999999999999998765 221111110000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~- 190 (604)
.. .+.+.+ ....+.||||||.... ..+...|++++|++|+|++..+.. +...
T Consensus 68 ---~~---------~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (204)
T 3th5_A 68 ---SA---------NVMVDG-KPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
Confidence 00 000101 1225779999997543 455677899999999988654432 1111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCCCCHHH--------H--HhCC--ccccCC-CEEEEEeCChhhhhccccHH
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKGTDAAD--------I--LEGK--SYRLKF-PWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~~~~~~--------~--l~~~--~~~l~~-g~~~v~~~s~~~i~~~~~~~ 249 (604)
.++... ..|+++|+||+|+.+....... + .... ....+. .|+.+++.++.++++++..+
T Consensus 122 ~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 122 AKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 222222 3789999999999764321100 0 0000 111222 56777777777777666543
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.20 E-value=2.7e-11 Score=114.41 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|++|+|||||+|++++..+ +.... +|... ..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~-~t~~~--~~------------------------------------- 57 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEES-PEGGR--FK------------------------------------- 57 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCC-TTCEE--EE-------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CCcce--EE-------------------------------------
Confidence 456899999999999999999998875 22211 11100 00
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
..+.+.+ ....+.||||||.... . |++.+|++++|++..+.. +.. .
T Consensus 58 -------------~~~~~~~-~~~~l~i~Dt~G~~~~-------------~-----~~~~~~~~i~v~d~~~~~s~~~~~ 105 (184)
T 3ihw_A 58 -------------KEIVVDG-QSYLLLIRDEGGPPEL-------------Q-----FAAWVDAVVFVFSLEDEISFQTVY 105 (184)
T ss_dssp -------------EEEEETT-EEEEEEEEECSSSCCH-------------H-----HHHHCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEECC-EEEEEEEEECCCChhh-------------h-----eecCCCEEEEEEECcCHHHHHHHH
Confidence 0011111 1125788999997552 1 788899999988665532 111 2
Q ss_pred HHHHhh-------hcceeEEEecccCCCCCC---CHHHHHhCCccccC-CCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS-------RERTFGVLTKIDLMDKGT---DAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~-------~~r~i~VltK~D~~~~~~---~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..++++|.||+|+.+... ...+. .......+ ..|+.+++.++.++++++..+....
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA-RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH-HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH-HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 232222 268999999999863221 11111 11111222 5789999999988888777665443
No 140
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.20 E-value=2.2e-11 Score=126.17 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=87.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhhc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (604)
+|+|+|.+|+|||||+|+|++..+ +.. .+|.......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~~~---------------------------------------- 203 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVET---------------------------------------- 203 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEEEE----------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEEEE----------------------------------------
Confidence 799999999999999999998875 211 1121110000
Q ss_pred CCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hh-hHH-
Q 007422 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDA- 192 (604)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~-~~~- 192 (604)
+.. ....++||||||.... ..+...|++.+|++|+|++..+.+. .. ...
T Consensus 204 --------------~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 204 --------------VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp --------------EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred --------------Eec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 111 1236899999995443 3456788999999999887654322 11 111
Q ss_pred HHhh------hcceeEEEecccCCCCCCCHHHHHh--CC--ccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 193 IKIS------RERTFGVLTKIDLMDKGTDAADILE--GK--SYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 193 l~l~------~~r~i~VltK~D~~~~~~~~~~~l~--~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.... ..|+++|+||+|+.+... ..++.. +. .......|+.+++.++.++++++..+...
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 1221 268999999999986543 222211 11 11223458888998888888877765543
No 141
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.19 E-value=8.9e-11 Score=117.57 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccccc-ccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
...+|+|+|..|+|||||+|+|+|..+.+.+.. .+|..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 457899999999999999999999876333321 2222221111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCCcchh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLAT 189 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~--~~d~iIl~v~~a~~d~~~ 189 (604)
+... ...++||||||+.+.... .......+..++. .+|++++|+......+..
T Consensus 79 ------------------~~~~-~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 79 ------------------RTMG-GFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp ------------------EEET-TEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred ------------------EEEC-CeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 1111 126899999999765322 2233333444453 578888875433322322
Q ss_pred h--HHHHhhh--------cceeEEEecccCCCC
Q 007422 190 S--DAIKISR--------ERTFGVLTKIDLMDK 212 (604)
Q Consensus 190 ~--~~l~l~~--------~r~i~VltK~D~~~~ 212 (604)
. .++.... .++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 3333332 389999999998754
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.17 E-value=9.5e-11 Score=126.31 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccc-cccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
..++|++||++|||||||+|+|+|......+. ..+|+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~------------------------------------- 221 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDD------------------------------------- 221 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCE-------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEE-------------------------------------
Confidence 46799999999999999999999986421211 1222222110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS 190 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~ 190 (604)
.+.+.+ ..+.+|||||+.+..... +..........+..+++.+|+++++++..+... ...
T Consensus 222 ---------------~i~~~g---~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~ 282 (439)
T 1mky_A 222 ---------------EVFIDG---RKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ 282 (439)
T ss_dssp ---------------EEEETT---EEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH
T ss_pred ---------------EEEECC---EEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH
Confidence 111111 257899999985432110 000000001123467888999988876543211 111
Q ss_pred HHHH---hhhcceeEEEecccCCCCCCC-HHHH---HhCC-ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 191 DAIK---ISRERTFGVLTKIDLMDKGTD-AADI---LEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 191 ~~l~---l~~~r~i~VltK~D~~~~~~~-~~~~---l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.... ....++++|+||+|+.+.... ..++ +... .......++.+++.++.++++++..+..
T Consensus 283 ~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 351 (439)
T 1mky_A 283 RMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 351 (439)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 2222 223889999999999865321 1111 1111 1112346888899888888887776554
No 143
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.5e-11 Score=126.99 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|++||.||+|||||+|+|+|.+........||+.|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 56799999999999999999999988655555678888743221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~ 192 (604)
..+ ...++|+||||+...+..+ ......+.+.++.+|+|++|++.. ......+.
T Consensus 115 ------------------~~~-~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad~il~vvD~~-~p~~~~~~ 168 (376)
T 4a9a_A 115 ------------------RYK-GAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCNLLFIILDVN-KPLHHKQI 168 (376)
T ss_dssp ------------------EET-TEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEEETT-SHHHHHHH
T ss_pred ------------------EeC-CcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcCccccccccC-ccHHHHHH
Confidence 111 1258899999998754432 112344567788999998877544 33222222
Q ss_pred ----HHhh-----hcceeEEEecccC
Q 007422 193 ----IKIS-----RERTFGVLTKIDL 209 (604)
Q Consensus 193 ----l~l~-----~~r~i~VltK~D~ 209 (604)
|... +.|.++|+||.|.
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhh
Confidence 2222 2788999999996
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6.8e-11 Score=111.97 Aligned_cols=113 Identities=22% Similarity=0.399 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..++|+|+|.+|||||||+|+|+|..+.+. .++..|+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~--------------------------------------- 84 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS--------------------------------------- 84 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCce---------------------------------------
Confidence 578999999999999999999999875221 11111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC-CCc-chh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA-NQD-LAT- 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a-~~d-~~~- 189 (604)
+..+ ....+.+|||||....... +.......+..+|++|+|++.. +.+ +..
T Consensus 85 -----~~~~------------~~~~~~l~Dt~G~~~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 138 (193)
T 2ged_A 85 -----AADY------------DGSGVTLVDFPGHVKLRYK---------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 138 (193)
T ss_dssp -------CC------------CCTTCSEEEETTCCBSSCC---------HHHHHHHHGGGEEEEEEEEETTCCHHHHHHH
T ss_pred -----eeee------------cCCeEEEEECCCCchHHHH---------HHHHHHhhcccCCEEEEEEECCCCchhHHHH
Confidence 0000 2347999999998764321 2333344556689999988665 221 111
Q ss_pred hHHHH-h---------hhcceeEEEecccCCCCC
Q 007422 190 SDAIK-I---------SRERTFGVLTKIDLMDKG 213 (604)
Q Consensus 190 ~~~l~-l---------~~~r~i~VltK~D~~~~~ 213 (604)
..++. . ...|+++|+||+|+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 139 AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 11111 1 137899999999998654
No 145
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=7.6e-12 Score=132.69 Aligned_cols=39 Identities=26% Similarity=0.173 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEE
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVL 74 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i 74 (604)
+|++||.+|+|||||+|+|+|..........||+.|+.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceE
Confidence 689999999999999999999873222233467766543
No 146
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=4.9e-11 Score=115.53 Aligned_cols=104 Identities=12% Similarity=0.046 Sum_probs=62.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHHhh-------hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKIS-------RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~l~-------~~r~i~VltK~ 207 (604)
.+.++||+|.... ...+...|.+.+|++|+|++..+.+ +.. ..++... ..|+++|.||+
T Consensus 88 ~l~~~Dt~g~~~~------------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTHH------------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcch------------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 5679999996431 1345566788899998887654432 111 1222111 27899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 156 DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 997532211111000011233568889999988888877766543
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.15 E-value=4.7e-11 Score=130.28 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=66.1
Q ss_pred EEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--------chhhHHHHhhh-
Q 007422 127 HLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISR- 197 (604)
Q Consensus 127 ~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--------~~~~~~l~l~~- 197 (604)
...+..+ ...++||||||..+. ...+..+++.+|++|||+++.+.. ..+.+.+.++.
T Consensus 103 ~~~~~~~-~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~ 168 (483)
T 3p26_A 103 TSHFSTH-RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS 168 (483)
T ss_dssp EEEEECS-SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH
T ss_pred eEEEecC-CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH
Confidence 3334443 347999999998654 556678899999999988765532 12223333332
Q ss_pred ---cceeEEEecccCCCCCCCH----H----HHHhCCcc-ccCCCEEEEEeCChhhhhcccc
Q 007422 198 ---ERTFGVLTKIDLMDKGTDA----A----DILEGKSY-RLKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 198 ---~r~i~VltK~D~~~~~~~~----~----~~l~~~~~-~l~~g~~~v~~~s~~~i~~~~~ 247 (604)
.++|+|+||+|+.+..... . ..+..... .....|+.+++.++.+++++..
T Consensus 169 ~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 169 LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 5699999999998633211 1 11110000 1134689999999998887654
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=5.6e-12 Score=137.93 Aligned_cols=153 Identities=15% Similarity=0.238 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|+|+|.+++|||||+|+|++..+.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 569999999999999999999998765222222122111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~ 191 (604)
.... +..++...++||||||..... .+...+++.+|++|||++..+.. ..+.+
T Consensus 42 ---------~~~~----v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVVDa~dg~~~qt~e 95 (537)
T 3izy_P 42 ---------GAFL----VSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVVAADDGVMKQTVE 95 (537)
T ss_dssp ---------TSCC----BCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEECBSSSCCCHHHHH
T ss_pred ---------eEEE----EEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEEECCCCccHHHHH
Confidence 0000 112223379999999976542 23446788999999987654422 22333
Q ss_pred HHHhhh---cceeEEEecccCCCCCCC-H-HHHHhCC----ccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 192 AIKISR---ERTFGVLTKIDLMDKGTD-A-ADILEGK----SYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~~~~-~-~~~l~~~----~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
.+..+. .|+++|+||+|+.+.... . ..+.... .+.....|+.+++.++.++++++..+...
T Consensus 96 ~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 96 SIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHh
Confidence 444433 899999999999754321 1 1111111 11122357788888888888777665543
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.14 E-value=1.1e-10 Score=127.77 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
..+|+|||.+|+|||||+|+|++..+ +. ..+|..+..-.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~-------------------------------------- 360 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVET-------------------------------------- 360 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEE--------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEE--------------------------------------
Confidence 45899999999999999999998874 21 11232221111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhh-H
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-D 191 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~-~ 191 (604)
+.. ....+.||||||.... ..++..|++.+|++|+|++..+.+ +... .
T Consensus 361 ----------------~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 361 ----------------VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410 (497)
T ss_dssp ----------------EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCGGGHHHHHH
T ss_pred ----------------EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcchhHHHHHHH
Confidence 111 1236899999997554 334678999999999988766532 1111 1
Q ss_pred HH-Hh------hhcceeEEEecccCCCCCCCHHHHHh--CCcc--ccCCCEEEEEeCChhhhhccccHHHH
Q 007422 192 AI-KI------SRERTFGVLTKIDLMDKGTDAADILE--GKSY--RLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 192 ~l-~l------~~~r~i~VltK~D~~~~~~~~~~~l~--~~~~--~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+ .+ ...|+|+|+||+|+.+... ..++.. +... .....|+.+++.++.++++++..+..
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 11 12 1278999999999976432 222221 1111 11234788899988998887776654
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.13 E-value=9.3e-11 Score=124.95 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=62.7
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-c-hhhHHHHhhh----cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~-~~~~~l~l~~----~r~i~VltK~D~~ 210 (604)
.++||||||..+. ...+..++..+|++|+++++.+.. . .+.+.+..+. .++++|+||+|+.
T Consensus 76 ~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 76 RISFIDAPGHEVL-------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEECCCCGGG-------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred eEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 6899999997543 455677889999999988765532 2 2333444333 5899999999998
Q ss_pred CCCCC--H----HHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 211 DKGTD--A----ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 211 ~~~~~--~----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+.... . .+.+.+ .......++.+++.++.++++++..+.
T Consensus 143 ~~~~~~~~~~~i~~~l~~-~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 143 SKEEALSQYRQIKQFTKG-TWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp CHHHHHHHHHHHHHHHTT-STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh-hCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 64321 1 111111 011134688888888777765555443
No 151
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.13 E-value=6.3e-11 Score=131.01 Aligned_cols=105 Identities=7% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh-----cceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR-----ERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~-----~r~i~VltK~D~~ 210 (604)
..+.++||||..... .+...|++++|++|+|++..+. .....++.... .|+++|+||+|+.
T Consensus 98 ~~~~i~Dt~G~e~~~-------------~~~~~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMH-------------ASHQFFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp CEEEEECCCSCCTTT-------------TTCHHHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred EEEEEEECCcHHHHH-------------HHHHHHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 368999999964432 2345678899999988865443 22233333222 7999999999997
Q ss_pred CCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHH
Q 007422 211 DKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRR 254 (604)
Q Consensus 211 ~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 254 (604)
+......+.+.......+..++.+++.++.++++++..+.....
T Consensus 164 ~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 164 PSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp TTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 65432122222222233456999999999999988876665443
No 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=7.9e-11 Score=131.59 Aligned_cols=177 Identities=18% Similarity=0.210 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|++||.+|+|||||+|+|++... .+..+.. ..+.......+..-.++..+...... .
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~--e 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNE--E 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHH--H
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchh--h
Confidence 456899999999999999999998642 1110000 00000000001111122222222221 1
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-------
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ------- 185 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~------- 185 (604)
+..|.+..+. . ..+..+ ...++||||||+.+. ...+..+++.+|++|+|+++.+.
T Consensus 227 ~~~GiTid~~--~--~~~~~~-~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSIC--T--SHFSTH-RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSCS--C--CEEECS-SCEEEEEECCSSSCH-------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEeee--e--EEEecC-CceEEEEECCCCccc-------------HHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 2223222221 1 122233 347999999998553 45566788999999998876542
Q ss_pred -cchhhHHHHhhh----cceeEEEecccCCCCCCCH----H----HHHhCCcc-ccCCCEEEEEeCChhhhhccc
Q 007422 186 -DLATSDAIKISR----ERTFGVLTKIDLMDKGTDA----A----DILEGKSY-RLKFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 186 -d~~~~~~l~l~~----~r~i~VltK~D~~~~~~~~----~----~~l~~~~~-~l~~g~~~v~~~s~~~i~~~~ 246 (604)
...+.+.+..+. .++|+|+||+|+.+..... . .++..... .....|+.+++.++.++.++.
T Consensus 289 ~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 112222333332 4599999999998632211 1 11110000 113468999999998887653
No 153
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.12 E-value=1e-10 Score=120.00 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=45.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh-H---HHHhh-----hcceeEEEe
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-D---AIKIS-----RERTFGVLT 205 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~-~---~l~l~-----~~r~i~Vlt 205 (604)
..+.+|||||.... .......+...|++++|++|+|++..+... ... . ++... ..|+++|+|
T Consensus 52 ~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 52 MTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp EEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred eEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 36899999997543 112224567888999999999887765431 111 1 12222 279999999
Q ss_pred cccCCC
Q 007422 206 KIDLMD 211 (604)
Q Consensus 206 K~D~~~ 211 (604)
|+|+.+
T Consensus 124 K~Dl~~ 129 (307)
T 3r7w_A 124 KMDLVQ 129 (307)
T ss_dssp CGGGSC
T ss_pred cccccc
Confidence 999986
No 154
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.12 E-value=3.5e-11 Score=124.14 Aligned_cols=151 Identities=18% Similarity=0.168 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|.+|+|||||+|++++..+ +.....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 467999999999999999999998765 322222222111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhh-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS- 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~- 190 (604)
+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ...
T Consensus 196 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 ---------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 000 001124679999998654 2345678999999999886654321 111
Q ss_pred -HHHHhh-----hcceeEEEecccCCCCCCCHHHHHh------------CCccccCC-CEEEEEeCChhhhhccccHHH
Q 007422 191 -DAIKIS-----RERTFGVLTKIDLMDKGTDAADILE------------GKSYRLKF-PWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 191 -~~l~l~-----~~r~i~VltK~D~~~~~~~~~~~l~------------~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 250 (604)
.++... ..|+++|+||+|+.+.......+.. ......+. .|+.+++.++.++++++..+.
T Consensus 247 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 325 (332)
T 2wkq_A 247 AKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325 (332)
T ss_dssp HTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHH
Confidence 121221 2799999999998764211110000 00011222 567777777777666555443
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.11 E-value=2.1e-10 Score=123.40 Aligned_cols=98 Identities=12% Similarity=0.222 Sum_probs=60.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--------hhhHHHHhhh---cc-eeEE
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISR---ER-TFGV 203 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--------~~~~~l~l~~---~r-~i~V 203 (604)
..++||||||..+. ...+..+++.+|++||+|++.+... .+.+.+.++. .+ +|+|
T Consensus 95 ~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL 161 (439)
T ss_pred eEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEE
Confidence 38999999997543 4445677889999999887654322 2333333333 45 8999
Q ss_pred EecccCCCCCC--C--------HHHHHhCCccc--cCCCEEEEEeCChhhhhccc
Q 007422 204 LTKIDLMDKGT--D--------AADILEGKSYR--LKFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 204 ltK~D~~~~~~--~--------~~~~l~~~~~~--l~~g~~~v~~~s~~~i~~~~ 246 (604)
+||+|+.+... . ..+++....+. ....++.+++.++.+++++.
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 99999864321 1 11111111111 12458889999888877644
No 156
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.10 E-value=5.7e-11 Score=124.04 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH-HHhhhcceeEEEecccCCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-IKISRERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~-l~l~~~r~i~VltK~D~~~~~~ 214 (604)
.++.||||||+... . ......+|.+++++++...+. .+.. ..+...+.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~-------------~---~~l~~~~d~vl~V~d~~~~~~-~~~i~~~il~~~~ivVlNK~Dl~~~~~ 229 (349)
T 2www_A 167 YDIILIETVGVGQS-------------E---FAVADMVDMFVLLLPPAGGDE-LQGIKRGIIEMADLVAVTKSDGDLIVP 229 (349)
T ss_dssp CSEEEEECCCC--C-------------H---HHHHTTCSEEEEEECCC-------------CCSCSEEEECCCSGGGHHH
T ss_pred CCEEEEECCCcchh-------------h---hhHHhhCCEEEEEEcCCcchh-HHHhHHHHHhcCCEEEEeeecCCCchh
Confidence 47899999998532 1 123568999988876654321 1111 1123467899999999874311
Q ss_pred ---CHHHHHhC--Cccc----cCCCEEEEEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHHH
Q 007422 215 ---DAADILEG--KSYR----LKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHL 285 (604)
Q Consensus 215 ---~~~~~l~~--~~~~----l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L 285 (604)
....+..+ ...+ ....++.+++.++.++++++..+.....+ ++.++ .+.....+--...+.+.+++.+
T Consensus 230 ~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~--~~~~~-~~~~~R~~~~~~~~~~~~~~~~ 306 (349)
T 2www_A 230 ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL--MLASG-ELTAKRRKQQKVWMWNLIQESV 306 (349)
T ss_dssp HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH--HHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH--HhhCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 01111110 0011 01245778888889999888887766543 33322 1222111112233446677777
Q ss_pred HHHHHhhcHH
Q 007422 286 ETVIKSRIPG 295 (604)
Q Consensus 286 ~~~i~~~LP~ 295 (604)
...+.+.+|.
T Consensus 307 ~~~~~~~~~~ 316 (349)
T 2www_A 307 LEHFRTHPTV 316 (349)
T ss_dssp HHHHHHSHHH
T ss_pred HHHHHhCcch
Confidence 7767777664
No 157
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.10 E-value=4.2e-10 Score=117.82 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhhcceeEEEecccCCCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRERTFGVLTKIDLMDKGTD 215 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~~r~i~VltK~D~~~~~~~ 215 (604)
.++.||||||+... ....+..+|.+|+++++...+....-...+...+.++|+||+|+.+....
T Consensus 172 ~~~iiiDTpGi~~~----------------~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~ 235 (355)
T 3p32_A 172 FDVILIETVGVGQS----------------EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEA 235 (355)
T ss_dssp CCEEEEEECSCSSH----------------HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHH
T ss_pred CCEEEEeCCCCCcH----------------HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHH
Confidence 47999999997542 11235889999998876554322110011233789999999998643210
Q ss_pred --HHHHHhCC-------ccccCCCEEEEEeCChhhhhccccHHHHHHHH
Q 007422 216 --AADILEGK-------SYRLKFPWIGVVNRSQADINKNVDMIAARRRE 255 (604)
Q Consensus 216 --~~~~l~~~-------~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e 255 (604)
....+... ......+++.+++.++.++++++..+.....+
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111100 00113457889999999999888877665543
No 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.10 E-value=3e-11 Score=113.95 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=56.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--ch-hhHHHHhh-----hcceeEEEeccc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LA-TSDAIKIS-----RERTFGVLTKID 208 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--~~-~~~~l~l~-----~~r~i~VltK~D 208 (604)
.+.+|||||.... ..+...|++.++++++|++..+.. +. ...++... ..|+++|.||+|
T Consensus 57 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 57 VLNVWDFAGREEF-------------YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp EEEEEEECSHHHH-------------HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEecCCCHHH-------------HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 6889999997542 334457788899888877554431 11 12232221 278899999999
Q ss_pred CCCCCCCH---HHHHhCCccccCCC----EEEEEeCChh-hhhccccHH
Q 007422 209 LMDKGTDA---ADILEGKSYRLKFP----WIGVVNRSQA-DINKNVDMI 249 (604)
Q Consensus 209 ~~~~~~~~---~~~l~~~~~~l~~g----~~~v~~~s~~-~i~~~~~~~ 249 (604)
+.+..... ...........+.. |+.+++.++. +++++...+
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHH
Confidence 86532110 11111111123333 7788887764 555555443
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.09 E-value=8.9e-11 Score=127.78 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhh---hcceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKIS---RERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~---~~r~i~VltK~D~~~ 211 (604)
..++||||||..+. ...+..++..+|++||++++.+.. ..+.+.+.++ ..|.++|+||+|+.+
T Consensus 73 ~~i~iiDtPGh~~~-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 73 YRITLVDAPGHADL-------------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEEECCCSSHHHH-------------HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred EEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 36899999997432 445567889999999988654421 1222333333 378899999999986
Q ss_pred CCC--C----HHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 212 KGT--D----AADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 212 ~~~--~----~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+.. . ..+.+... .+ ....++.+++.++.++++++..+....
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 321 0 11122111 11 135688888888888887766655443
No 160
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.08 E-value=4e-10 Score=108.92 Aligned_cols=110 Identities=24% Similarity=0.429 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|+|+|.+|+|||||+|+|++..+.+. ..+..|+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~------------------------------------- 50 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA------------------------------------- 50 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-------------------------------------
Confidence 679999999999999999999999875221 1112221110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcC----CCeEEEEEecC-CCc-
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK----PNCIILAISPA-NQD- 186 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~----~d~iIl~v~~a-~~d- 186 (604)
.+ ....+.+|||||.... +.++..|++. +|++|+|++.. +.+
T Consensus 51 -------~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 98 (218)
T 1nrj_B 51 -------DY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 98 (218)
T ss_dssp -------TG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTTC
T ss_pred -------Ee------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChHH
Confidence 00 1237899999998653 2344555554 89998888766 222
Q ss_pred chh-hHHH----Hh------hhcceeEEEecccCCCCCC
Q 007422 187 LAT-SDAI----KI------SRERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 187 ~~~-~~~l----~l------~~~r~i~VltK~D~~~~~~ 214 (604)
+.. ..++ .. ...|+++|+||+|+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 99 LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 211 1121 11 1267999999999987543
No 161
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.07 E-value=3.6e-11 Score=130.45 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..|.|+|+|..++|||||+++|.+..+.....+..|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~------------------------------------------ 40 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQH------------------------------------------ 40 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEe------------------------------------------
Confidence 57999999999999999999998755421111111100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
+.... +.. +...++||||||..++.. +...++..+|++|||++..+. ...+.+
T Consensus 41 --------i~~~~----v~~-~~~~i~~iDTPGhe~f~~-------------~~~~~~~~aD~aILVVda~~g~~~qT~e 94 (501)
T 1zo1_I 41 --------IGAYH----VET-ENGMITFLDTPGHAAFTS-------------MRARGAQATDIVVLVVAADDGVMPQTIE 94 (501)
T ss_dssp --------SSCCC----CCT-TSSCCCEECCCTTTCCTT-------------SBCSSSBSCSSEEEEEETTTBSCTTTHH
T ss_pred --------EEEEE----EEE-CCEEEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEeecccCccHHHHH
Confidence 00000 111 123789999999866532 234567889999998865432 123334
Q ss_pred HHHhhh---cceeEEEecccCCCCCC-CHHHHHhC-Cccc----cCCCEEEEEeCChhhhhccccHH
Q 007422 192 AIKISR---ERTFGVLTKIDLMDKGT-DAADILEG-KSYR----LKFPWIGVVNRSQADINKNVDMI 249 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~~~-~~~~~l~~-~~~~----l~~g~~~v~~~s~~~i~~~~~~~ 249 (604)
.+..+. .|+++|+||+|+.+... .....+.. ...+ ....++.+++.++.++++++..+
T Consensus 95 ~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I 161 (501)
T 1zo1_I 95 AIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAI 161 (501)
T ss_dssp HHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHT
T ss_pred HHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhh
Confidence 444443 88999999999975321 11111111 0111 11358888888888877665543
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.06 E-value=8.8e-11 Score=112.18 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
...+|+|+|+.|||||||+++|+|..+ +....++......
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 43 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFA--------------------------------------- 43 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEE---------------------------------------
Confidence 357899999999999999999999875 2211111000000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-h
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~ 190 (604)
.-.+.+.+. ...+.++||||.... +.++..|.+.++++++|++..+.. ... .
T Consensus 44 ------------~~~i~~~g~-~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (199)
T 2f9l_A 44 ------------TRSIQVDGK-TIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVYDIAKHLTYENVE 97 (199)
T ss_dssp ------------EEEEEETTE-EEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEECCE-EEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 000111110 124678999997543 223456778899988877544321 111 1
Q ss_pred HHHHhh------hcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 DAIKIS------RERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 ~~l~l~------~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.++... ..+++.|+||+|+.+................+..++.+++.++.++++++..+....
T Consensus 98 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 98 RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222211 268999999999865322111110000112234466666666666666665554443
No 163
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.05 E-value=1.7e-10 Score=109.69 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=58.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh-hHHHH----hh---hcceeEEEecc
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIK----IS---RERTFGVLTKI 207 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~-~~~l~----l~---~~r~i~VltK~ 207 (604)
.+.++||+|..... +.+...|++.+|++|+|++..+.+ +.. ..++. .. ..++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~~------------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGEN------------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcchh------------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 46789999964310 123345777899998887654432 111 12221 11 26899999999
Q ss_pred cCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHH
Q 007422 208 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 252 (604)
Q Consensus 208 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 252 (604)
|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 125 Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHH
Confidence 987532211110000011233468888888888888777665543
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=9.5e-11 Score=122.91 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=48.9
Q ss_pred CceEeeCCCCccccCC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEEecCCCcchhhH--HHHhhh--c
Q 007422 137 NLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEKP-------------NCIILAISPANQDLATSD--AIKISR--E 198 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~-~q~~~~~~~i~~~~~~~i~~~-------------d~iIl~v~~a~~d~~~~~--~l~l~~--~ 198 (604)
.+++|||||+.+.... ..-..+...+......|++.+ |+++++++++...+...+ +++... .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~ 175 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKV 175 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCC
Confidence 5899999999654221 111224455555555666543 457777766555444433 233322 8
Q ss_pred ceeEEEecccCCCCCCCHH---HHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 199 RTFGVLTKIDLMDKGTDAA---DILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 199 r~i~VltK~D~~~~~~~~~---~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
++|+|+||+|+.+... .. ..+.......+..|+.+++.++.+ ++.+..
T Consensus 176 piIlV~NK~Dl~~~~e-v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~ 226 (361)
T 2qag_A 176 NIVPVIAKADTLTLKE-RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKE 226 (361)
T ss_dssp CEEEEEECCSSSCHHH-HHHHHHHHHHHTTCC-CCSCCCC----------CHH
T ss_pred CEEEEEECCCCCCHHH-HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHH
Confidence 8999999999986432 11 111111223345677777776665 444433
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.04 E-value=3.5e-10 Score=124.11 Aligned_cols=134 Identities=14% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..+.|+++|.+|||||||+|+|++..-.....+.+.... ..+..+.++... .
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~--------------------~~~~~~~d~~~~--------e 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK--------------------AARHATSDWMEL--------E 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------CCHHHHHHH--------H
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc--------------------cccceecccchh--------h
Confidence 468999999999999999999984331111111000000 000001111111 1
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
...| ..+....+.+.+ . ...++||||||..+. ...+..+++.+|++|+|+++.+. ...+..
T Consensus 64 ~~~G--iTi~~~~~~~~~--~-~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~~g~~~~t~~ 125 (528)
T 3tr5_A 64 KQRG--ISVTTSVMQFPY--K-DYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAAKGVEPRTIK 125 (528)
T ss_dssp HHHC--CSSSSSEEEEEE--T-TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred hcCC--eeEEEeEEEEEe--C-CEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 1122 222333333332 2 236999999998765 34577899999999998876653 222333
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.+..+. .|+++|+||+|+...
T Consensus 126 ~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 126 LMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHcCCCEEEEEeCCCCccc
Confidence 343333 899999999999643
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.02 E-value=7.4e-10 Score=118.28 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=60.3
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhHHHHhhh----cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~~l~l~~----~r~i~VltK~D~~ 210 (604)
.++||||||..+. ...+...+..+|++|||+++.+. ...+.+.+..+. .++++|+||+|+.
T Consensus 84 ~i~iiDtPGh~~f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 84 RVSFIDAPGHEAL-------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEECSSHHHH-------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred EEEEEECCChHHH-------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 5899999996432 33445677889999998765542 222333333333 5789999999998
Q ss_pred CCCC------CHHHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 211 DKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 211 ~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+... ++.+++.+. ......++.+++.++.++++++..+.
T Consensus 151 ~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 151 DKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp CHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 6431 112222211 11234678888877777765555443
No 167
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.02 E-value=1.4e-09 Score=116.07 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=55.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--cchhhHHHHhhh----cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--d~~~~~~l~l~~----~r~i~VltK~D~~ 210 (604)
.++||||||..+. ...+..++..+|++||++++.+. ...+.+.+..+. .++++|+||+|+.
T Consensus 82 ~i~iiDtPGh~~f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 82 RVSFVDSPGHETL-------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEECSSHHHH-------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred EEEEEECCCHHHH-------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 6899999996432 23445567788999998765542 122223333322 5799999999998
Q ss_pred CCCC--CH----HHHHhCCccccCCCEEEEEeCChhhhhccccHHH
Q 007422 211 DKGT--DA----ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 250 (604)
Q Consensus 211 ~~~~--~~----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 250 (604)
+... .. .+++.+. ......++.+++.++.++++++..+.
T Consensus 149 ~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 149 DEKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp CTTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 7542 11 2222211 11235688888888877766655544
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.01 E-value=2e-10 Score=127.54 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=43.4
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh---cceeEEEecccCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
.++||||||..++.. ++..+++.+|.+|+|++..+. ...+.+.+..++ .|+++|+||+|+.+
T Consensus 71 ~i~liDTPGhe~F~~-------------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTT-------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTT-------------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 589999999876532 233577889999998866542 122333444443 79999999999975
No 169
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.01 E-value=5e-10 Score=124.11 Aligned_cols=167 Identities=18% Similarity=0.221 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
..+.|+++|..++|||||+++|++.. +..++... +..+.|.... .
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~---------------------~~~~~D~~~~--------E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK---------------------REQLLDTLDV--------E 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc---------------------cccccccchh--------h
Confidence 46789999999999999999997531 11110000 0000000000 0
Q ss_pred hhcCCCCcccCccEEEEEecCCC--CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh
Q 007422 113 RETGRTKQISSVPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~--~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~ 189 (604)
+. .+.++....+.+.+..++. ..++||||||..+. ...+..+++.+|++|+|+++.+.. ..+
T Consensus 50 re--rGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVDa~~gv~~qt 114 (600)
T 2ywe_A 50 RE--RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLIDASQGIEAQT 114 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEETTTBCCHHH
T ss_pred hc--ccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 01 1223333444555443222 36889999999765 345667889999999987665432 222
Q ss_pred hHHHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCC---CEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
...+..+ +.|+|+|+||+|+.+.. ...+.......++. .++.+++.++.++++++..+..
T Consensus 115 ~~~~~~a~~~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~ 180 (600)
T 2ywe_A 115 VANFWKAVEQDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVN 180 (600)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHH
Confidence 2333332 27899999999987543 22211111111222 3678888888777766655443
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.01 E-value=8.3e-10 Score=118.73 Aligned_cols=98 Identities=10% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh----cceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR----ERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~----~r~i~VltK~D~~ 210 (604)
..++||||||..+. ...+..++..+|++|||++..+... .+.+.+.++. .++|+|+||+|+.
T Consensus 104 ~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 104 RKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred ceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 46999999997653 3345578899999999886654322 2223333333 4689999999998
Q ss_pred CCCCCHH-HH---HhCCccccC-----CCEEEEEeCChhhhhccc
Q 007422 211 DKGTDAA-DI---LEGKSYRLK-----FPWIGVVNRSQADINKNV 246 (604)
Q Consensus 211 ~~~~~~~-~~---l~~~~~~l~-----~g~~~v~~~s~~~i~~~~ 246 (604)
+...+.. .+ +......++ ..++.+++.++.+++++.
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 6322111 11 110001122 357788888888877654
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.99 E-value=4.4e-10 Score=124.78 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+...|+|+|..++|||||+++|++.. +..++.. . +..+.|.... .
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~-------------------~~~~~D~~~~--------E 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--M-------------------EAQVLDSMDL--------E 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--c-------------------cccccccchh--------h
Confidence 45789999999999999999998632 1111100 0 0000000000 0
Q ss_pred hhcCCCCcccCccEEEEEecCC--CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chh
Q 007422 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~ 189 (604)
+. .+.++....+.+.+...+ ...++||||||..+. ...+..+++.+|++|+|+++.+.. ..+
T Consensus 48 re--rGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa~~gv~~qt 112 (599)
T 3cb4_D 48 RE--RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAGQGVEAQT 112 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEETTTCCCTHH
T ss_pred hc--ccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCCCCCHHH
Confidence 01 122233334444444322 236899999998764 445678889999999988665432 222
Q ss_pred hHHHHhh---hcceeEEEecccCCCCCCCHHHHHhCCccccCC---CEEEEEeCChhhhhccccHHHH
Q 007422 190 SDAIKIS---RERTFGVLTKIDLMDKGTDAADILEGKSYRLKF---PWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 190 ~~~l~l~---~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
...+..+ +.|+|+|+||+|+.+.. ...+.......++. .++.+++.++.++++++..+..
T Consensus 113 ~~~~~~~~~~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~ 178 (599)
T 3cb4_D 113 LANCYTAMEMDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVR 178 (599)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhh
Confidence 2333322 28899999999997643 11111110111122 3788888888877766655443
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.96 E-value=2.2e-09 Score=112.74 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=40.5
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcch--hhHHHHhhh---cce-eEEEe-cccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISR---ERT-FGVLT-KIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~--~~~~l~l~~---~r~-i~Vlt-K~D~ 209 (604)
.++||||||..+. ...+..+++.+|++||+++ +.... +.+.+.++. .+. |+|+| |+|+
T Consensus 61 ~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 61 NMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred EEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 5899999998654 2334566799999999887 33332 334444433 566 99999 9998
No 173
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.96 E-value=1.1e-09 Score=116.82 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=45.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh---cc-eeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR---ER-TFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~---~r-~i~VltK~D~~ 210 (604)
..++||||||..+. ...+..++..+|++|+++++.+... .+.+.+..+. .| +++|+||+|+.
T Consensus 75 ~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 75 RHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp CEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 47999999998753 3455678899999999887655332 2333444443 56 78999999998
Q ss_pred C
Q 007422 211 D 211 (604)
Q Consensus 211 ~ 211 (604)
+
T Consensus 142 ~ 142 (405)
T 2c78_A 142 D 142 (405)
T ss_dssp C
T ss_pred C
Confidence 5
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.94 E-value=1.1e-09 Score=118.36 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC-CCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (604)
....|+++|.+++|||||+|+|++.. .++... .. .+..-....+..-.+++.+......+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~~-----------------~~~~~~~~~g~~~~~~a~~~d~~~~e- 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-IE-----------------KFEKEAAELGKGSFKYAWVLDKLKAE- 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-HH-----------------HHHHHGGGGSSSCCCHHHHHHHHHHH-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-HH-----------------HhhhhHHhcCCcchhhhhhhccchhH-
Confidence 34689999999999999999998641 111100 00 00000000000111233332222211
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc----
Q 007422 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---- 187 (604)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~---- 187 (604)
+..|.+..+.. ..+..++ ..++||||||..+. ...+..++..+|++|||+++.+...
T Consensus 67 -r~~GiTi~~~~----~~~~~~~-~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf 127 (458)
T 1f60_A 67 -RERGITIDIAL----WKFETPK-YQVTVIDAPGHRDF-------------IKNMITGTSQADCAILIIAGGVGEFEAGI 127 (458)
T ss_dssp -HHTTCCCSCSC----EEEECSS-EEEEEEECCCCTTH-------------HHHHHHSSSCCSEEEEEEECSHHHHHHHT
T ss_pred -HhcCcEEEEEE----EEEecCC-ceEEEEECCCcHHH-------------HHHHHhhhhhCCEEEEEEeCCcCcccccc
Confidence 22333222221 1233332 37999999997542 4456678999999999886543211
Q ss_pred ----hhhHHHHhhh---c-ceeEEEecccCCCCCCCH--------HHHHhCCccc-cCCCEEEEEeCChhhhhccc
Q 007422 188 ----ATSDAIKISR---E-RTFGVLTKIDLMDKGTDA--------ADILEGKSYR-LKFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 188 ----~~~~~l~l~~---~-r~i~VltK~D~~~~~~~~--------~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~ 246 (604)
.+.+.+.++. . ++|+|+||+|+.+...+. .+++...... -...|+.+++.++.++.++.
T Consensus 128 ~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 128 SKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp CTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 2223333333 4 489999999998422111 1111110000 12578999999888887654
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=3.7e-09 Score=112.36 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=89.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (604)
.+.|++||.+||||||||++|+|....-.+...+|..|..-.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-------------------------------------- 198 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-------------------------------------- 198 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE--------------------------------------
Confidence 467999999999999999999997531111122333331110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhh---
Q 007422 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (604)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~--- 190 (604)
+...+...++++||||+......... +. ......++.++.+++++..........
T Consensus 199 ----------------V~~~~~~~~~l~DtpGli~~a~~~~~--L~----~~fl~~~era~~lL~vvDls~~~~~~ls~g 256 (416)
T 1udx_A 199 ----------------VEVSEEERFTLADIPGIIEGASEGKG--LG----LEFLRHIARTRVLLYVLDAADEPLKTLETL 256 (416)
T ss_dssp ----------------EECSSSCEEEEEECCCCCCCGGGSCC--SC----HHHHHHHTSSSEEEEEEETTSCHHHHHHHH
T ss_pred ----------------EEecCcceEEEEeccccccchhhhhh--hh----HHHHHHHHHHHhhhEEeCCccCCHHHHHHH
Confidence 11111236899999999754322110 11 112344678999988876542111111
Q ss_pred --HHHHh----hhcceeEEEecccCCCCCCCHHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 191 --DAIKI----SRERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 191 --~~l~l----~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+...+ +..|.++|+||+|.... .....+.. .....+..++.+++.+..++++++..+....
T Consensus 257 ~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~-~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 257 RKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALAD-ALAREGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHH-HHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHH-HHHhcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 11222 23899999999998764 21222211 1112234678888888887777766655443
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=5e-10 Score=106.32 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
....|+|+|+.|||||||++.|+|..+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999875
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=3.2e-09 Score=101.85 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=56.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhh---cCCCeEEEEEecCCCcch-hhHH---HHhhhcceeEEEecccC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI---EKPNCIILAISPANQDLA-TSDA---IKISRERTFGVLTKIDL 209 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i---~~~d~iIl~v~~a~~d~~-~~~~---l~l~~~r~i~VltK~D~ 209 (604)
++.++||||+..... +......++..+..|+ ..++.++++++....... .... +.....+.++|.||+|+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 688999999864211 1112233444455555 456777776654332111 1122 22233788899999998
Q ss_pred CCCCCCH--HHHHhCC--ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 210 MDKGTDA--ADILEGK--SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 210 ~~~~~~~--~~~l~~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
...+... ...+... .......++.+++..+.+++++...+..
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 8654211 1111110 1112234566777766666666655443
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.89 E-value=3.5e-09 Score=113.84 Aligned_cols=98 Identities=18% Similarity=0.321 Sum_probs=60.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc------c--hhhHHHHhhh----cceeEE
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD------L--ATSDAIKISR----ERTFGV 203 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d------~--~~~~~l~l~~----~r~i~V 203 (604)
..++||||||..+. ...+..+++.+|++|+|+++.+.. + .+.+.+.++. .++++|
T Consensus 84 ~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivv 150 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVA 150 (435)
T ss_dssp CEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEE
T ss_pred eEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 47999999998663 345667899999999988766521 1 1222233322 468899
Q ss_pred EecccCCCCCC--C--------HHHHHhCCccc-cCCCEEEEEeCChhhhhccc
Q 007422 204 LTKIDLMDKGT--D--------AADILEGKSYR-LKFPWIGVVNRSQADINKNV 246 (604)
Q Consensus 204 ltK~D~~~~~~--~--------~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~ 246 (604)
+||+|+.+... + ..+.+....+. ....|+.+++.++.++.+..
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 99999987321 1 11111111111 12458889988888876654
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.88 E-value=4.6e-09 Score=109.22 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=57.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhhcceeEEEecccCCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISRERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~~r~i~VltK~D~~~~~~ 214 (604)
.++.||||||+.... . .....+|.+++++++...+. ..... .....+.++|+||+|+.+..
T Consensus 149 ~~i~liDTpG~~~~~-------------~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-~~~~~p~ivv~NK~Dl~~~~- 210 (341)
T 2p67_A 149 YDVVIVETVGVGQSE-------------T---EVARMVDCFISLQIAGGGDDLQGIKK-GLMEVADLIVINKDDGDNHT- 210 (341)
T ss_dssp CSEEEEEEECCTTHH-------------H---HHHTTCSEEEEEECC------CCCCH-HHHHHCSEEEECCCCTTCHH-
T ss_pred CCEEEEeCCCccchH-------------H---HHHHhCCEEEEEEeCCccHHHHHHHH-hhhcccCEEEEECCCCCChH-
Confidence 479999999986531 1 13588999988887643321 11000 11236889999999987531
Q ss_pred CHHH---HHhCC--ccc-----cCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 215 DAAD---ILEGK--SYR-----LKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 215 ~~~~---~l~~~--~~~-----l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
+... -+... ... ....++.+++.++.++++++..+....
T Consensus 211 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 211 NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111 11100 001 012457788888888888887766543
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.86 E-value=4.2e-09 Score=115.62 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=46.5
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||..+. ...+..+++.+|++|+|+++.+.. ..+...+..+. .|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 37899999999664 234667899999999988766532 22333444443 78999999999976
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 149 ~ 149 (529)
T 2h5e_A 149 R 149 (529)
T ss_dssp S
T ss_pred c
Confidence 4
No 181
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.84 E-value=3.1e-09 Score=112.92 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh---cc-eeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR---ER-TFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~---~r-~i~VltK~D~~ 210 (604)
..++||||||..+. ...+..+++.+|++|+++++.+... .+.+.+.+++ .+ +++|+||+|+.
T Consensus 66 ~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 66 RHYAHTDCPGHADY-------------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp CEEEEEECSSHHHH-------------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred eEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 47999999997542 3455678899999999887655322 2233333333 56 68999999998
Q ss_pred C
Q 007422 211 D 211 (604)
Q Consensus 211 ~ 211 (604)
+
T Consensus 133 ~ 133 (397)
T 1d2e_A 133 Q 133 (397)
T ss_dssp S
T ss_pred C
Confidence 5
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.84 E-value=1.1e-10 Score=130.19 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC--------cchhhHHHHhhh---c-ceeEE
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--------DLATSDAIKISR---E-RTFGV 203 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~--------d~~~~~~l~l~~---~-r~i~V 203 (604)
..++||||||+.+.... +..++..+|++||||++... ...+.+.+.++. . ++|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 47899999998764221 23566789999998866542 222333333333 4 48999
Q ss_pred EecccCCCCCCCH--------HHHH-hCCccc-cCCCEEEEEeCChhhhhcc
Q 007422 204 LTKIDLMDKGTDA--------ADIL-EGKSYR-LKFPWIGVVNRSQADINKN 245 (604)
Q Consensus 204 ltK~D~~~~~~~~--------~~~l-~~~~~~-l~~g~~~v~~~s~~~i~~~ 245 (604)
+||+|+.+..... .+.+ ...... -...|+.+++.++.++.+.
T Consensus 322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 9999998632211 1111 110110 1235789999998887653
No 183
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=3.8e-09 Score=109.89 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCccccccccccc
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p 71 (604)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874223333466666
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.80 E-value=3.7e-09 Score=105.34 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred CCCeEEEEEecCCC---cchhh-HHHHhh-------hcceeEEEecccCCCCCCCHHHHHhCCcc-ccCCCEEEEEeCCh
Q 007422 172 KPNCIILAISPANQ---DLATS-DAIKIS-------RERTFGVLTKIDLMDKGTDAADILEGKSY-RLKFPWIGVVNRSQ 239 (604)
Q Consensus 172 ~~d~iIl~v~~a~~---d~~~~-~~l~l~-------~~r~i~VltK~D~~~~~~~~~~~l~~~~~-~l~~g~~~v~~~s~ 239 (604)
++|++|+|++..+. .+... .++... ..|+++|+||+|+.+... ..+. ..... ..+..|+.+++.++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v~~~-~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-IRDA-HTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-HHHH-HHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-HHHH-HHHHHhcCCCeEEEEECCCC
Confidence 69999998876553 22221 222211 278999999999864321 1111 11111 12457899999988
Q ss_pred hhhhccccHHH
Q 007422 240 ADINKNVDMIA 250 (604)
Q Consensus 240 ~~i~~~~~~~~ 250 (604)
.++++++..+.
T Consensus 240 ~gv~elf~~l~ 250 (255)
T 3c5h_A 240 VNVDLAFSTLV 250 (255)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88887766554
No 185
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=2.3e-08 Score=103.66 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=55.8
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH-HhhhcceeEEEecccCCCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI-KISRERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l-~l~~~r~i~VltK~D~~~~~~ 214 (604)
.++.||||||+.... . .....+|.+++++++...+. .+... .....+.++|+||+|+.+...
T Consensus 148 ~~~iliDT~Gi~~~~-------------~---~v~~~~d~vl~v~d~~~~~~-~~~i~~~i~~~~~ivvlNK~Dl~~~~~ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE-------------T---AVADLTDFFLVLMLPGAGDE-LQGIKKGIFELADMIAVNKADDGDGER 210 (337)
T ss_dssp CCEEEEEECSSSSCH-------------H---HHHTTSSEEEEEECSCC-------CCTTHHHHCSEEEEECCSTTCCHH
T ss_pred CCEEEEECCCCCcch-------------h---hHHhhCCEEEEEEcCCCccc-HHHHHHHHhccccEEEEEchhccCchh
Confidence 389999999996521 1 12367898888776542221 00000 011256788889999765322
Q ss_pred CH----HHHHh--CCccc----cCCCEEEEEeCChhhhhccccHHHHHH
Q 007422 215 DA----ADILE--GKSYR----LKFPWIGVVNRSQADINKNVDMIAARR 253 (604)
Q Consensus 215 ~~----~~~l~--~~~~~----l~~g~~~v~~~s~~~i~~~~~~~~~~~ 253 (604)
.. .++.. ....+ ..-..+.+++.++.+++++...+....
T Consensus 211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 11110 00011 012457788888888888888776654
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.77 E-value=5.9e-09 Score=118.26 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||+.+. ...+..+++.+|++|+++++.+.. ..+...+..+. .|.++|+||+|+..
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 47999999999764 234567888999999988765532 22333333333 89999999999976
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 142 ~ 142 (693)
T 2xex_A 142 A 142 (693)
T ss_dssp C
T ss_pred c
Confidence 4
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.74 E-value=1.2e-08 Score=110.65 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--------chhhHHHHhhh---cc-eeEE
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISR---ER-TFGV 203 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--------~~~~~~l~l~~---~r-~i~V 203 (604)
..++||||||..+. ...+..++..+|++|||++..+.. ..+.+.+.++. .+ +|+|
T Consensus 121 ~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv 187 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV 187 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred eEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 46899999998654 233456789999999988665432 12233333333 44 8999
Q ss_pred EecccCCCCCC--C--------HHHHHhCC-ccc--cCCCEEEEEeCChhhhhcccc
Q 007422 204 LTKIDLMDKGT--D--------AADILEGK-SYR--LKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 204 ltK~D~~~~~~--~--------~~~~l~~~-~~~--l~~g~~~v~~~s~~~i~~~~~ 247 (604)
+||+|+.+..- + ..+.+... .+. ....|+.+++.++.++.++.+
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 99999965321 1 11122110 000 124588888888888877653
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.71 E-value=1.5e-08 Score=117.83 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHHHhhh---cc-eeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISR---ER-TFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l~l~~---~r-~i~VltK~D~~ 210 (604)
..++||||||..+. ...+..++..+|++|||++..+... .+.+.+.++. .| +|+|+||+|+.
T Consensus 359 ~kI~IIDTPGHedF-------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 359 RHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp CEEEEEECCCHHHH-------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred EEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 47999999997543 3455678999999999887654322 2333444433 56 78999999998
Q ss_pred CCCCC-------HHHHHhCCcc-ccCCCEEEEEeCCh
Q 007422 211 DKGTD-------AADILEGKSY-RLKFPWIGVVNRSQ 239 (604)
Q Consensus 211 ~~~~~-------~~~~l~~~~~-~l~~g~~~v~~~s~ 239 (604)
+.... ..+++..... .-...++.+++.++
T Consensus 426 ~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 426 DDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKA 462 (1289)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTT
T ss_pred cchhhHHHHHHHHHHHHHhccccccceeEEEEEeccC
Confidence 63211 1112211111 01246888888876
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.70 E-value=2e-08 Score=113.97 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..++||||||..+. ...+..+++.+|.+|+++++.+.. ..+...+..+. .|.++|+||+|+..
T Consensus 77 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 77 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred eEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 47999999998664 456778899999999988766543 22333333333 89999999999975
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 144 ~ 144 (691)
T 1dar_A 144 A 144 (691)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.68 E-value=4.3e-08 Score=100.22 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHH----HHhh-----hcceeEEEec
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA----IKIS-----RERTFGVLTK 206 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~----l~l~-----~~r~i~VltK 206 (604)
..+.||||||..+.... .. +...|.++++++|+|++..+.-...... +..+ ..++++|.||
T Consensus 46 v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK 115 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115 (331)
T ss_dssp SCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred EEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEEC
Confidence 57999999998765210 00 3578999999999988766541111122 2222 1688999999
Q ss_pred ccCCCC
Q 007422 207 IDLMDK 212 (604)
Q Consensus 207 ~D~~~~ 212 (604)
+|+.++
T Consensus 116 ~DL~~~ 121 (331)
T 3r7w_B 116 VDGLSE 121 (331)
T ss_dssp CCSSCS
T ss_pred cccCch
Confidence 999764
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.66 E-value=7.5e-08 Score=109.32 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
..+.||||||..++ ...+..+++.+|.+|+++++.+.. ..+...+..+. .|.++|+||+|+..
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 47999999998764 445678889999999988765532 22333444443 88999999999875
Q ss_pred C
Q 007422 212 K 212 (604)
Q Consensus 212 ~ 212 (604)
.
T Consensus 149 ~ 149 (704)
T 2rdo_7 149 A 149 (704)
T ss_pred c
Confidence 4
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=6.6e-08 Score=102.76 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~l 60 (604)
.|+|||+.|||||||+|+|+|..+.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5899999999999999999998753
No 193
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.65 E-value=9.7e-09 Score=107.86 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999986
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.65 E-value=1.3e-08 Score=103.91 Aligned_cols=120 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCceEeeCCCCccccCC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEEecCC--CcchhhHHHHhhh--
Q 007422 136 VNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEKP-------------NCIILAISPAN--QDLATSDAIKISR-- 197 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~-~q~~~~~~~i~~~~~~~i~~~-------------d~iIl~v~~a~--~d~~~~~~l~l~~-- 197 (604)
..++++||||+...... ..-..+...+......|++.. +++++++.|.. .|....+.++...
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~ 155 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNK 155 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhc
Confidence 46899999999532211 111223333444444555432 34666666543 3332223333222
Q ss_pred cceeEEEecccCCCCCCC--HHHHHhCCccccCCCEEEEEeCChhhhhccccHHHHHHHHH
Q 007422 198 ERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRER 256 (604)
Q Consensus 198 ~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~e~ 256 (604)
.++++|+||.|+..+..- ..+.........+..|+.+++.++ ++++.+..+.....+.
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 589999999999764321 011111111223456788888887 8888776665544443
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.65 E-value=2.2e-08 Score=115.96 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc-chhhHHHHhhh---cceeEEEecccCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d-~~~~~~l~l~~---~r~i~VltK~D~~ 210 (604)
..+.||||||..+. ...+..+++.+|++|+|++..+.. ..+...+..+. .+.++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 36899999999775 345678899999999988765532 22333333332 7889999999987
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.64 E-value=5.6e-08 Score=109.79 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
....|+|+|..++|||||+++|++........|.+ ..+..+.++.....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V------------------------~~g~~~~d~~~~e~------- 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV------------------------EEGTTTTDYTPEAK------- 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG------------------------GGTCCSSCCSHHHH-------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee------------------------cCCcccccCCHHHH-------
Confidence 45689999999999999999999654210011100 00112222221110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
..| .++...... +... ...+.||||||..+. ...+..+++.+|.+++++++.+. +..+..
T Consensus 57 -~~g--iti~~~~~~--~~~~-~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~ 117 (665)
T 2dy1_A 57 -LHR--TTVRTGVAP--LLFR-GHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSAEAGVQVGTER 117 (665)
T ss_dssp -HTT--SCCSCEEEE--EEET-TEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHH
T ss_pred -hcC--CeEEecceE--EeeC-CEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcCCcccchhHHH
Confidence 111 122222222 2222 236899999998764 45577888999999998875442 333444
Q ss_pred HHHhhh---cceeEEEecccCC
Q 007422 192 AIKISR---ERTFGVLTKIDLM 210 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~ 210 (604)
.+..+. .+.++|+||+|+.
T Consensus 118 ~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 118 AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHccCCEEEEecCCchh
Confidence 444443 7899999999987
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.63 E-value=2.6e-08 Score=104.57 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-...- ++.. +..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--------------~~~r---~~~l~-------- 75 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--------------PDER---FDFLC-------- 75 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--------------CCHH---HHHHH--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--------------CCcc---ceeec--------
Confidence 3468999999999999999999998762223335666664322110 0000 00000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a 183 (604)
....... . ....++||||||+...... .+.+...+..+++++|+|++|++..
T Consensus 76 ~~~~p~~----------~---~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 76 QYHKPAS----------K---IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp HHHCCSE----------E---ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cccCccc----------c---cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEecC
Confidence 0000000 0 0125899999999874332 1223345678999999999987653
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.56 E-value=1.7e-07 Score=103.37 Aligned_cols=132 Identities=16% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCC-CCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
.-.|+|||...+|||||.++|+-.. ...+ .|.+...- ..+..+.|+..+.+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~-~G~V~~~~--------------------~~~~~~~D~~~~Er------- 82 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQM-AGSVKARK--------------------AARHATSDWMAMER------- 82 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHH-HHHHHHC------------------------------------------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccc-cceeecCc--------------------cccccccCChHHHH-------
Confidence 4569999999999999999997221 0000 00000000 00011222222221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhH
Q 007422 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~ 191 (604)
-++-++....+.+.+.+ ..+.||||||..++.. -+.+.++-+|.+|+||++... ...+..
T Consensus 83 ---eRGITI~s~~~~~~~~~---~~iNlIDTPGHvDF~~-------------Ev~raL~~~DgAvlVvda~~GV~~qT~~ 143 (548)
T 3vqt_A 83 ---ERGISVTTSVMQFPYRD---RVVNLLDTPGHQDFSE-------------DTYRVLTAVDSALVVIDAAKGVEAQTRK 143 (548)
T ss_dssp --------CTTTEEEEEETT---EEEEEECCCCGGGCSH-------------HHHHHHHSCSEEEEEEETTTBSCHHHHH
T ss_pred ---HCCCcEeeceEEEEECC---EEEEEEeCCCcHHHHH-------------HHHHHHHhcCceEEEeecCCCcccccHH
Confidence 12334555556655532 3699999999998742 356778899999998866543 344455
Q ss_pred HHHhhh---cceeEEEecccCCCC
Q 007422 192 AIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 192 ~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.++.+. .|.|+++||+|....
T Consensus 144 v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 144 LMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHHHHHhCCceEEEEecccchhc
Confidence 566655 899999999998543
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.56 E-value=3.3e-08 Score=103.72 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999999864
No 200
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=9.5e-08 Score=101.23 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.|.++|||..|||||||+|+|+|..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 35589999999999999999999854
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.54 E-value=1.1e-07 Score=99.54 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=61.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
.+|++||.+|+|||||+|+|+|..........||..|+.-.. ..+ + ..+.. .....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~------------------~-~~l~~----~~~~~ 57 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLE------------------D-ERLYA----LQRTF 57 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECC------------------C-HHHHH----HHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecC------------------h-HHHHH----HHHHh
Confidence 479999999999999999999875322233356777754331 110 0 01100 00001
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~ 184 (604)
... .... ......+.||||||+......+. .+ .+....+++.+|+|++|++..+
T Consensus 58 ~~~-~~~~---------~~~~~~i~lvDtpGl~~~a~~~~--~l----g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 58 AKG-ERVP---------PVVPTHVEFVDIAGLVKGAHKGE--GL----GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CBT-TBCC---------CEECCEEEEEECCSCCCCCCSSS--CT----THHHHHHHHTCSEEEEEEECCC
T ss_pred ccc-cccc---------ccCCceEEEEECCCccccccccc--hH----HHHHHHHHHhCCEEEEEEECCC
Confidence 100 0000 00012589999999987543321 12 2344567899999999876544
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.49 E-value=4.9e-08 Score=94.36 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhhcceeEEEecccCCCCC-
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRERTFGVLTKIDLMDKG- 213 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~~r~i~VltK~D~~~~~- 213 (604)
..++.+|||||....+. .+-..++.++++++..+.+............+.++|+||+|+.+..
T Consensus 108 ~~d~iiidt~G~~~~~~----------------~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~ 171 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV----------------DFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVG 171 (221)
T ss_dssp TCSEEEEEEEEBSSGGG----------------GCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCCc----------------hhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchh
Confidence 35789999999522111 0112456677776654432111111222348899999999986531
Q ss_pred CCHHHHHhCC-ccccCCCEEEEEeCChhhhhccccHHHH
Q 007422 214 TDAADILEGK-SYRLKFPWIGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 214 ~~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 251 (604)
.+...+.... .......++.+++.++.++++++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence 2222221100 1111345778888888888777665543
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.47 E-value=7.2e-07 Score=88.53 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh-----CCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV-----GKDF 59 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~-----G~~~ 59 (604)
..+.++++|..|+||||++++|. |.++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 56778889999999999999998 6665
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.46 E-value=1.3e-07 Score=106.18 Aligned_cols=128 Identities=22% Similarity=0.200 Sum_probs=77.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (604)
-.|+|+|...+|||||.++|+-.. |...+.- . -..+..+.|+....++
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~g-----------~-------v~~g~~~~D~~~~Ere-------- 50 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNS------GAITELG-----------S-------VDKGTTRTDNTLLERQ-------- 50 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHH------TCCSSCS-----------S-------CCCSCCSTTCSTTHHH--------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc------CCCcccc-----------c-------cccCCcccCCcHHHHh--------
Confidence 358999999999999999996211 1111000 0 0012223343333221
Q ss_pred cCCCCcccCccEEEEEecCCCCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHH
Q 007422 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAI 193 (604)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l 193 (604)
.| -++....+.+.+ +...++||||||..++ ..-+...++-+|.+|++|++... ...+...+
T Consensus 51 RG--ITI~s~~~~~~~---~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~ 112 (638)
T 3j25_A 51 RG--ITIQTGITSFQW---ENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILF 112 (638)
T ss_dssp HS--SCSSCCCCCCBC---SSCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH
T ss_pred CC--CcEEeeeEEEEE---CCEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH
Confidence 12 223333333332 2246999999999887 33456778999999888765442 34445556
Q ss_pred Hhhh---cceeEEEecccCCCC
Q 007422 194 KISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 194 ~l~~---~r~i~VltK~D~~~~ 212 (604)
+.+. .|.|+++||+|....
T Consensus 113 ~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 113 HALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHcCCCeEEEEeccccccC
Confidence 6655 788999999998654
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.44 E-value=3e-07 Score=104.72 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcccccccccccEEEEEEecCCCCcceeeeccCCCCccCChHHHHHHHHHhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (604)
+.-.|+|||...+|||||.++|+-.. |...+.. .+. .+..+.|+....+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~-----------------~~~~~~D~~~~E~------- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH-----------------DGAATTDWMVQEQ------- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec-----------------CCCccCCChHHHH-------
Confidence 34579999999999999999997321 1111100 000 0112233322221
Q ss_pred hhcCCCCcccCccEEEEEecCC----CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cc
Q 007422 113 RETGRTKQISSVPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DL 187 (604)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~----~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~ 187 (604)
-++-++....+.+.+.+.. ...+.||||||..++ ..-+...++-+|.+|++|++... ..
T Consensus 61 ---eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvVDaveGV~~ 124 (709)
T 4fn5_A 61 ---ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVFCGTSGVEP 124 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred ---HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEEECCCCCch
Confidence 1334455666777765543 235899999999887 33456778889999888766543 34
Q ss_pred hhhHHHHhhh---cceeEEEecccCCC
Q 007422 188 ATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 188 ~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
.+...++.+. .|.++|+||+|...
T Consensus 125 qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 125 QSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred hHHHHHHHHHHcCCCeEEEEccccccC
Confidence 4455566655 89999999999854
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.40 E-value=8.1e-07 Score=89.04 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
+.++|||+.|||||||+|+|+|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999975
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=5.6e-07 Score=94.67 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCcc-cccccccccEE
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPR-GSGIVTRRPLV 73 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~-~~~~~Tr~p~~ 73 (604)
.-..|++||.+|||||||+|+|+|..+.+. ....||..|+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 346899999999999999999999875233 33456777744
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.35 E-value=1.6e-06 Score=94.11 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=43.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cc-eeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR--ER-TFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r-~i~VltK~D~~~~ 212 (604)
.+++||||||..... ......+.... .++ .+|.+++|+++... ........... .+ +++|+||+|....
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa~~g-~~~~~~a~~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDASIG-QACEAQAKAFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEETTCC-TTHHHHHHHHHHHHCCCCEEEECTTSCCC
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEecccc-ccHHHHHHHHHhhcCceEEEEeCCccccc
Confidence 379999999987531 11222333322 223 78988887765442 22222222222 46 5899999998866
Q ss_pred CCCHHHH
Q 007422 213 GTDAADI 219 (604)
Q Consensus 213 ~~~~~~~ 219 (604)
+..+..+
T Consensus 256 ~g~~l~~ 262 (504)
T 2j37_W 256 GGGALSA 262 (504)
T ss_dssp CTHHHHH
T ss_pred hHHHHHH
Confidence 5444443
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.22 E-value=1.2e-06 Score=84.82 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
..|.|+|+|.+|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999764
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=6.9e-07 Score=90.11 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
...+|++||.+|+|||||+|+|+|.....++
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 3468999999999999999999998753333
No 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.13 E-value=7.6e-06 Score=86.61 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
..+.++++|+.|||||||+|+|+|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999999964
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=4e-06 Score=92.52 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
..++|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 467899999999999999999999874
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.07 E-value=9.1e-05 Score=78.77 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh---cceeEEEecccCCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR---ERTFGVLTKIDLMDK 212 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~---~r~i~VltK~D~~~~ 212 (604)
.++.||||||..... ......+..+ ..+..+|.++||+++... ........... ..+.+|+||+|....
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i--~~~~~pd~vlLVvDA~~g-q~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI--SNVIHPHEVILVIDGTIG-QQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEEGGGG-GGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH--HHhhcCceEEEEEeCCCc-hhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 489999999976531 1123333332 223468888887765432 11111111111 566789999998776
Q ss_pred CCCHHHHHhCCccccCCCEEEEEeCChhhhhcccc
Q 007422 213 GTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 247 (604)
Q Consensus 213 ~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 247 (604)
+..+..+... .+.+...+. .+++++++..
T Consensus 255 gG~~ls~~~~----~g~PI~fig--~Ge~vddL~~ 283 (443)
T 3dm5_A 255 GGGALSAVAA----TGAPIKFIG--TGEKIDDIEP 283 (443)
T ss_dssp HHHHHHHHHT----TCCCEEEEE--CSSSTTCEEE
T ss_pred ccHHHHHHHH----HCCCEEEEE--cCCChHHhhh
Confidence 5544544432 233333333 2556655544
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.99 E-value=4.2e-06 Score=83.37 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.++++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999875
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.87 E-value=6.9e-05 Score=79.63 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=44.2
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh---cceeEEEecccCCC
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR---ERTFGVLTKIDLMD 211 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~---~r~i~VltK~D~~~ 211 (604)
.+++.||||||....+. +......+..+. ..+ .++.++||+++.... .......... ..+.+|+||+|...
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVlDa~~gq-~a~~~a~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVIDASIGQ-KAYDLASRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEEEGGGGG-GGHHHHHHHHHHCSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEEeCccch-HHHHHHHHHhcccCCcEEEEecccccc
Confidence 35899999999754111 122333444432 222 578888877665421 1111112222 67889999999876
Q ss_pred CCCCHHHHH
Q 007422 212 KGTDAADIL 220 (604)
Q Consensus 212 ~~~~~~~~l 220 (604)
.+..+..+.
T Consensus 253 ~~G~als~~ 261 (433)
T 3kl4_A 253 KGGGALSAV 261 (433)
T ss_dssp CHHHHHHHH
T ss_pred cchHHHHHH
Confidence 654444443
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.86 E-value=3.4e-05 Score=82.35 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+|+||||++++|.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.66 E-value=0.00025 Score=72.03 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=46.8
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cceeEEEecccCCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR--ERTFGVLTKIDLMDKGT 214 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r~i~VltK~D~~~~~~ 214 (604)
++.++||+|....... .......+...+.+..+..|+.+++++++............+.+ ..+++++||.|....+.
T Consensus 186 d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg 264 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGG 264 (304)
T ss_dssp SEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCT
T ss_pred CEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccccccc
Confidence 5679999998543211 11112222233444556678878777665443222222222222 67899999999877666
Q ss_pred CHHHHH
Q 007422 215 DAADIL 220 (604)
Q Consensus 215 ~~~~~l 220 (604)
.+..+.
T Consensus 265 ~~l~i~ 270 (304)
T 1rj9_A 265 VLIPIV 270 (304)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 555554
No 218
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.63 E-value=1.6e-05 Score=84.76 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..-.|+|+|.+++|||||+|.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4557899999999999999999974
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00056 Score=69.20 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+|+||||++..|.+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999854
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.46 E-value=0.00059 Score=69.99 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=43.0
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK~D~~ 210 (604)
++.++||+|...... .....+..+.+.. .+|-.++++++... ++++..++ ..+++|+||.|..
T Consensus 213 d~vliDtaG~~~~~~-----~l~~eL~~i~ral--~~de~llvLDa~t~----~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETNR-----NLMDEMKKIARVT--KPNLVIFVGDALAG----NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTTT-----CHHHHHHHHHHHH--CCSEEEEEEEGGGT----THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHHH-----HHHHHHHHHHHHh--cCCCCEEEEecHHH----HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 577899999865322 2444444443322 36777777765433 23333322 6679999999986
Q ss_pred CCCCCHHHHH
Q 007422 211 DKGTDAADIL 220 (604)
Q Consensus 211 ~~~~~~~~~l 220 (604)
..+.....++
T Consensus 282 a~~G~~l~~~ 291 (328)
T 3e70_C 282 ARGGAALSIS 291 (328)
T ss_dssp SCCHHHHHHH
T ss_pred cchhHHHHHH
Confidence 6554444443
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.45 E-value=0.00046 Score=74.13 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=43.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHH---HHhh-cCCCeEEEEEecCCCcchhhHHHHhhh------cceeEEEec
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMV---RSYI-EKPNCIILAISPANQDLATSDAIKISR------ERTFGVLTK 206 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~---~~~i-~~~d~iIl~v~~a~~d~~~~~~l~l~~------~r~i~VltK 206 (604)
++.||||+|...... .....+..++ +... ..++.++|++++... ++.+..++ ..+.+|+||
T Consensus 377 DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDattG----q~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 377 DVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG----QNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp SEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT----HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCccc----HHHHHHHHHHHhhcCCCEEEEEc
Confidence 688999999864311 1222222222 2121 236677777654432 22323322 567899999
Q ss_pred ccCCCCCCCHHHHHh
Q 007422 207 IDLMDKGTDAADILE 221 (604)
Q Consensus 207 ~D~~~~~~~~~~~l~ 221 (604)
.|....+..+..++.
T Consensus 448 LD~takgG~~lsi~~ 462 (503)
T 2yhs_A 448 LDGTAKGGVIFSVAD 462 (503)
T ss_dssp GGGCSCCTHHHHHHH
T ss_pred CCCcccccHHHHHHH
Confidence 998777666666653
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.40 E-value=0.0012 Score=70.25 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHH-HHhhcCCCeEEEEEecCCCcchhhHHHHhhh--cc-eeEEEecccCCC
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMV-RSYIEKPNCIILAISPANQDLATSDAIKISR--ER-TFGVLTKIDLMD 211 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~-~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--~r-~i~VltK~D~~~ 211 (604)
.++.||||||..... ...+..+. ...+..++.+++|+.+.. ........+... .+ +-+|+||+|...
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda~~-g~~~~~~~~~f~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDAMT-GQDAANTAKAFNEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEETTB-CTTHHHHHHHHHHHSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeecch-hHHHHHHHHHHhccCCCeEEEEecCCCCc
Confidence 379999999975431 11222221 134557888888776543 211111111111 34 457999999876
Q ss_pred CCCCHHHH
Q 007422 212 KGTDAADI 219 (604)
Q Consensus 212 ~~~~~~~~ 219 (604)
.+..+..+
T Consensus 255 ~~g~~l~i 262 (433)
T 2xxa_A 255 RGGAALSI 262 (433)
T ss_dssp CCTHHHHH
T ss_pred cHHHHHHH
Confidence 55434433
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.00023 Score=72.31 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+|+||||++..|.+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 5779999999999999999975
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.0017 Score=65.57 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.|+++|.+|+||||++..|.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999875
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.91 E-value=0.0019 Score=65.49 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=43.9
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHH-Hhhh--cceeEEEecccCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI-KISR--ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l-~l~~--~r~i~VltK~D~~~~~ 213 (604)
+..++||.|+...... .+.++..+...+.+..+.+++-++|+++|. ........+ .+.+ ..+++++||.|....+
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDpt-sglD~~~~~~~~~~~~g~t~iiiThlD~~~~~ 262 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGN-TGLNMLPQAREFNEVVGITGLILTKLDGSARG 262 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEEGG-GGGGGHHHHHHHHHHTCCCEEEEECCSSCSCT
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEeCC-CCcCHHHHHHHHHHhcCCCEEEEeCCCCCCcc
Confidence 3578999998643211 011122222223333455788677777743 222222222 2222 6789999999987666
Q ss_pred CCHHHHH
Q 007422 214 TDAADIL 220 (604)
Q Consensus 214 ~~~~~~l 220 (604)
.....+.
T Consensus 263 g~~l~~~ 269 (302)
T 3b9q_A 263 GCVVSVV 269 (302)
T ss_dssp HHHHHHH
T ss_pred ChheehH
Confidence 5555544
No 226
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.88 E-value=0.0077 Score=61.44 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|.+|+||||++..|.+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999874
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.86 E-value=0.0023 Score=67.83 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+|+||||++..|.+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999874
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0042 Score=64.33 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=46.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC-cchhhHHHHhhh--cceeEEEecccCCCCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISR--ERTFGVLTKIDLMDKG 213 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~-d~~~~~~l~l~~--~r~i~VltK~D~~~~~ 213 (604)
+..++||.|+...... .+.++..+...+.+..+..++-++|+++|... |..++ ...+.+ ..+++++||.|....+
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t~iiiThlD~~~~g 319 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGITGLILTKLDGSARG 319 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCCEEEEESCTTCSCT
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCeEEEEecCcccccc
Confidence 4578999998653211 11122223333444556678877777774322 32222 222222 6789999999987766
Q ss_pred CCHHHHH
Q 007422 214 TDAADIL 220 (604)
Q Consensus 214 ~~~~~~l 220 (604)
.....+.
T Consensus 320 G~~lsi~ 326 (359)
T 2og2_A 320 GCVVSVV 326 (359)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5555554
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.57 E-value=0.00076 Score=68.39 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999999974
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.0066 Score=56.97 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|..|||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999985
No 231
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.30 E-value=0.0012 Score=68.32 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc---------hhhHHHHhh---------
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKIS--------- 196 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~---------~~~~~l~l~--------- 196 (604)
...+.+|||+|..+. +.++..|.++++++|+|++.++.|. ...++..+.
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 346899999997654 5667889999999999987766331 112222221
Q ss_pred -hcceeEEEecccCC
Q 007422 197 -RERTFGVLTKIDLM 210 (604)
Q Consensus 197 -~~r~i~VltK~D~~ 210 (604)
..++|+|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 17899999999985
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.21 E-value=0.0088 Score=60.27 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|..|+||||++..|.|.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999875
No 233
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.13 E-value=0.003 Score=65.66 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc--------c-hhhHHHHhh----------
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------L-ATSDAIKIS---------- 196 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d--------~-~~~~~l~l~---------- 196 (604)
..+.+|||||.... +.++..|.++++++|+|++.++.| . ...++..+.
T Consensus 201 ~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 201 VPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 47899999998543 566788999999999998776632 1 111222211
Q ss_pred hcceeEEEecccCC
Q 007422 197 RERTFGVLTKIDLM 210 (604)
Q Consensus 197 ~~r~i~VltK~D~~ 210 (604)
..++|+|+||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 16899999999986
No 234
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.03 E-value=0.0028 Score=67.24 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~ 55 (604)
.-.|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4467799999999999999776
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.85 E-value=0.0079 Score=60.83 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
-.++++|..|||||||+|+|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999999
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0046 Score=58.37 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCCCCc----cccccccccc
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLP----RGSGIVTRRP 71 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~~lP----~~~~~~Tr~p 71 (604)
.-..|+++|+.|||||||+++|.+. +| .....+||-|
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~--~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ--NPEKFVYPVPYTTRPP 58 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCEECSCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh--CCccEEeeecccccCC
Confidence 3446889999999999999999975 34 2233456666
No 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.56 E-value=0.0027 Score=64.24 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=59.1
Q ss_pred CceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchh---hHHHHhh---hcceeEEEecccCC
Q 007422 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKIS---RERTFGVLTKIDLM 210 (604)
Q Consensus 137 ~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~---~~~l~l~---~~r~i~VltK~D~~ 210 (604)
.+.+||| ..+. +.++..|++++|++|+|++..+.+... ..++..+ ..+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 2221 234557999999999988766544221 2333332 38899999999997
Q ss_pred CCCC--CHHHHHhCCccccCCCEEEEEeCChhhhhccccH
Q 007422 211 DKGT--DAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 248 (604)
Q Consensus 211 ~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 248 (604)
++.. +..+..... ... ..|+.+++.++.+++++++.
T Consensus 129 ~~~~v~~~~~~~~~~-~~~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 129 DEDDLRKVRELEEIY-SGL-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp CHHHHHHHHHHHHHH-TTT-SCEEECCTTTCTTHHHHHHH
T ss_pred CchhHHHHHHHHHHH-hhh-CcEEEEECCCCcCHHHHHHH
Confidence 5421 011221110 011 67899999998888766543
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.27 E-value=0.0087 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999963
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.17 E-value=0.0071 Score=56.55 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHhhhhCCC--CCccccccccccc
Q 007422 37 IAVVGGQSSGKSSVLESIVGKD--FLPRGSGIVTRRP 71 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~~--~lP~~~~~~Tr~p 71 (604)
|+|+|+.|||||||++.|+... -+......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233344567766
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.14 E-value=0.0093 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999963
No 241
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.09 E-value=0.012 Score=58.33 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999996
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.08 E-value=0.013 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999964
No 243
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.06 E-value=0.011 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999963
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.04 E-value=0.0084 Score=56.51 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.03 E-value=0.0087 Score=55.40 Aligned_cols=23 Identities=13% Similarity=0.501 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..++++|+.|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.02 E-value=0.014 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999963
No 247
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.02 E-value=0.011 Score=58.85 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999996
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.01 E-value=0.0094 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.01 E-value=0.012 Score=56.40 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999996
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.95 E-value=0.012 Score=57.32 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999973
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.94 E-value=0.012 Score=58.15 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999996
No 252
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.92 E-value=0.013 Score=56.77 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.01 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999995
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.85 E-value=0.013 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|+.|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999986
No 255
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.83 E-value=0.014 Score=56.92 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999963
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.82 E-value=0.015 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999963
No 257
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.78 E-value=0.016 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
-.++++|+.|||||||+|+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999975
No 258
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.78 E-value=0.013 Score=60.10 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||+++|+|. +|...|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g 200 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEER 200 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCc
Confidence 5899999999999999999996 344444
No 259
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.77 E-value=0.014 Score=57.42 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999963
No 260
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.75 E-value=0.015 Score=57.60 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999996
No 261
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.73 E-value=0.045 Score=54.63 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCCeEEEEEecCCCcchh-hHHHHhhh-cceeEEEecccCCCCCC--CHHHHHhCCccccCCCEEEEEeCC
Q 007422 163 ENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISR-ERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNRS 238 (604)
Q Consensus 163 ~~~~~~~i~~~d~iIl~v~~a~~d~~~-~~~l~l~~-~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s 238 (604)
...+...++++|+|+.|+++.+..... ....++.. .+.++|+||+|+.+... .+.+.+. ..+..++.+++.+
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~----~~g~~~i~iSA~~ 89 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFE----NQGIRSLSINSVN 89 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHH----TTTCCEEECCTTT
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHH----hcCCcEEEEECCC
Confidence 566788899999998887654432222 23333333 89999999999987421 1233332 1223567777777
Q ss_pred hhhhhccccHHHHH
Q 007422 239 QADINKNVDMIAAR 252 (604)
Q Consensus 239 ~~~i~~~~~~~~~~ 252 (604)
+.+++++...+...
T Consensus 90 ~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 90 GQGLNQIVPASKEI 103 (282)
T ss_dssp CTTGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 77777666655443
No 262
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.71 E-value=0.014 Score=60.47 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||+++|+|. +|...+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g 204 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQR 204 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCce
Confidence 6899999999999999999995 344444
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.69 E-value=0.015 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999996
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.69 E-value=0.015 Score=57.11 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~T 68 (604)
.++++|+.|||||||++.|.|. +|..+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS--SCCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 5789999999999999999996 344445443
No 265
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.65 E-value=0.032 Score=57.12 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=45.0
Q ss_pred CCCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCC---------cchhhHHHHhh---------
Q 007422 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---------DLATSDAIKIS--------- 196 (604)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~---------d~~~~~~l~l~--------- 196 (604)
...+.+|||+|-.+. +.++..|.++++++|+|++.+.. .-...+++.+.
T Consensus 160 ~v~l~iwDtaGQe~~-------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQRSE-------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSCHHH-------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCcccc-------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 357899999997543 78899999999999999866521 11111222211
Q ss_pred -hcceeEEEecccCCC
Q 007422 197 -RERTFGVLTKIDLMD 211 (604)
Q Consensus 197 -~~r~i~VltK~D~~~ 211 (604)
..++++|+||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 168999999999864
No 266
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.64 E-value=0.017 Score=57.37 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||++.|.|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999996
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.61 E-value=0.013 Score=55.08 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999986
No 268
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.58 E-value=0.018 Score=57.50 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999996
No 269
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.56 E-value=0.017 Score=57.15 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999996
No 270
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.53 E-value=0.015 Score=63.16 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~T 68 (604)
.|+|+|++||||||++++|+|. +|.+.+.+|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3899999999999999999995 465555433
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.52 E-value=0.013 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.|+|+|.+|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999985
No 272
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.50 E-value=0.014 Score=56.11 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.++|+|+.|||||||++.|.|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999996
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.47 E-value=0.014 Score=55.82 Aligned_cols=22 Identities=14% Similarity=0.527 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999995
No 274
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.47 E-value=0.018 Score=56.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999996
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.46 E-value=0.015 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 276
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.45 E-value=0.013 Score=59.84 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---------CcchhhHHHHhh----------
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---------QDLATSDAIKIS---------- 196 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~---------~d~~~~~~l~l~---------- 196 (604)
..+.+|||.|-.+. +.++..|.++++++|+|++-+. ..-...+++.+.
T Consensus 167 v~l~iwDtgGQe~~-------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 167 VIFRMVDVGGQRSE-------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EEEEEEEECCSHHH-------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEcCCchhH-------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 47899999997543 6778899999999999984331 111111222221
Q ss_pred hcceeEEEecccCCC
Q 007422 197 RERTFGVLTKIDLMD 211 (604)
Q Consensus 197 ~~r~i~VltK~D~~~ 211 (604)
..++++|+||+|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 168999999999864
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.34 E-value=0.021 Score=55.50 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999996
No 278
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.26 E-value=0.015 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|||+.|||||||++.|.|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999996
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.19 E-value=0.022 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++++|..|||||||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 578999999999999998664
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.19 E-value=0.021 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|.++|+|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999975
No 281
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.08 E-value=0.025 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999973
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.08 E-value=0.02 Score=51.91 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999996
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.08 E-value=0.025 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.98 E-value=0.027 Score=55.53 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999974
No 285
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.94 E-value=0.016 Score=58.58 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHhhcCCCeEEEEEecCCCcchhh---HHHHhh---hcceeEEEecccCCCCCC-C-HHHHHhCCccccCCCEEEEEe
Q 007422 165 MVRSYIEKPNCIILAISPANQDLATS---DAIKIS---RERTFGVLTKIDLMDKGT-D-AADILEGKSYRLKFPWIGVVN 236 (604)
Q Consensus 165 ~~~~~i~~~d~iIl~v~~a~~d~~~~---~~l~l~---~~r~i~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~ 236 (604)
+.+.|+.++|.+++|++..+.+.... .++..+ ..+.++|+||+|+.++.. . ...... .....+..++.+++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~-~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS-IYRDAGYDVLKVSA 150 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH-HHHHTTCEEEECCT
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH-HHHHCCCeEEEEEC
Confidence 34468999999998876654433222 334333 388999999999986431 0 111111 11123346788888
Q ss_pred CChhhhhcccc
Q 007422 237 RSQADINKNVD 247 (604)
Q Consensus 237 ~s~~~i~~~~~ 247 (604)
.++.+++++..
T Consensus 151 ~~g~gi~~L~~ 161 (302)
T 2yv5_A 151 KTGEGIDELVD 161 (302)
T ss_dssp TTCTTHHHHHH
T ss_pred CCCCCHHHHHh
Confidence 88887776554
No 286
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.88 E-value=0.043 Score=57.03 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCCcchh-hHHHHhh-hcceeEEEecccCCCCCCC---HHHHHhCCccccCC---CE
Q 007422 160 QDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKIS-RERTFGVLTKIDLMDKGTD---AADILEGKSYRLKF---PW 231 (604)
Q Consensus 160 ~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~-~~~l~l~-~~r~i~VltK~D~~~~~~~---~~~~l~~~~~~l~~---g~ 231 (604)
+..+.+...+.+.++++++|++..+.+..- .+..+.. ..++++|+||+|+.++... ..+.+.......+. .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 355777888888899998887665422111 1112222 3889999999999876432 11221111111222 46
Q ss_pred EEEEeCChhhhhccccHHHH
Q 007422 232 IGVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 232 ~~v~~~s~~~i~~~~~~~~~ 251 (604)
+.+++.++.+++++...+..
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHhhhhh
Confidence 78888888888877766543
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.88 E-value=0.022 Score=56.20 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||+++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999995
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.88 E-value=0.02 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-..|+|+|.+||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999764
No 289
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.85 E-value=0.025 Score=56.70 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999996
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.82 E-value=0.023 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 291
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.77 E-value=0.09 Score=49.05 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhh--------cceeEEEecc
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR--------ERTFGVLTKI 207 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~--------~r~i~VltK~ 207 (604)
.+++||||||.... .+...+..+|.+|+++.+...+......++..+ .+..+|+|++
T Consensus 76 yD~viiD~~~~~~~---------------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV---------------ITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSSH---------------HHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCCH---------------HHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 47899999986531 233456668998888766554422222333332 3557899999
Q ss_pred cCC
Q 007422 208 DLM 210 (604)
Q Consensus 208 D~~ 210 (604)
|.-
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.73 E-value=0.025 Score=57.10 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999984
No 293
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.69 E-value=0.045 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.-++++|++|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999885
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.63 E-value=0.027 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 295
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.63 E-value=0.028 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+++.|.|.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999986
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.014 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+.|+|||..|||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999985
No 297
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.56 E-value=0.034 Score=57.46 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57899999999999999999964
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.54 E-value=0.022 Score=54.14 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.39 E-value=0.031 Score=51.77 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++++|.+|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 300
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.37 E-value=0.039 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999974
No 301
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.36 E-value=0.044 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~ 63 (604)
.++++|+.|||||||++.|.|.. |.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCC
Confidence 67899999999999999999974 653
No 302
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.36 E-value=0.041 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh---CCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV---GKD 58 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~---G~~ 58 (604)
...|+|+|.+||||||+++.|. |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999999 975
No 303
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.32 E-value=0.037 Score=57.09 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999964
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.31 E-value=0.032 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999764
No 305
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.20 E-value=0.046 Score=57.35 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=44.3
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCc---------chhhHHHHhh----------
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKIS---------- 196 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d---------~~~~~~l~l~---------- 196 (604)
..+.+|||+|-.+. +.++..|.++++++|+|++..+.| -...++..+.
T Consensus 217 v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 47899999998664 567789999999999998766521 1111222111
Q ss_pred hcceeEEEecccCCC
Q 007422 197 RERTFGVLTKIDLMD 211 (604)
Q Consensus 197 ~~r~i~VltK~D~~~ 211 (604)
..++++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 168999999999853
No 306
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.19 E-value=0.043 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57899999999999999999964
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.043 Score=56.77 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999964
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.16 E-value=0.049 Score=51.84 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~ 65 (604)
.++|+|+.|||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 578999999999999999998543344433
No 309
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.11 E-value=0.047 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999999963
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.08 E-value=0.048 Score=49.15 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCCHHHHHhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESI 54 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL 54 (604)
+.|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 311
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.08 E-value=0.046 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999999963
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.04 E-value=0.035 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 6789999999999999999985
No 313
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.01 E-value=0.036 Score=57.31 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999985
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.97 E-value=0.03 Score=53.79 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.1
Q ss_pred eEEEEcCCCCCHHHHHhhhh-CC
Q 007422 36 AIAVVGGQSSGKSSVLESIV-GK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~-G~ 57 (604)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999 86
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.92 E-value=0.095 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
...|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999874
No 316
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.91 E-value=0.059 Score=55.95 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCcchh-hHHHHhh-hcceeEEEecccCCCCCCCH---HHHHhCCccccCC---CEEE
Q 007422 162 IENMVRSYIEKPNCIILAISPANQDLAT-SDAIKIS-RERTFGVLTKIDLMDKGTDA---ADILEGKSYRLKF---PWIG 233 (604)
Q Consensus 162 i~~~~~~~i~~~d~iIl~v~~a~~d~~~-~~~l~l~-~~r~i~VltK~D~~~~~~~~---~~~l~~~~~~l~~---g~~~ 233 (604)
.+++...+.+.++++++|++..+.+... .+..+.. ..++++|+||+|+.++.... .+.+.......+. .++.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 4667777888899998888765543221 1122222 38999999999998764321 1221111111222 3578
Q ss_pred EEeCChhhhhccccHHHHHHHHHHHhccCCCCchhhhccChHHHHHHHHHH
Q 007422 234 VVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKH 284 (604)
Q Consensus 234 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~ 284 (604)
+++.++.+++++...+..... ....+---....|...|.+.|...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 888888888877765543321 110000002357777776665543
No 317
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.90 E-value=0.05 Score=56.52 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999964
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.84 E-value=0.042 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999975
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.63 E-value=0.05 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.56 E-value=0.064 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999964
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.51 E-value=0.046 Score=50.18 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.....+|+|+.|||||||++||.+.
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999999874
No 322
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.49 E-value=0.042 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999999974
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.45 E-value=0.05 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|..||||||+.++|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 324
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=92.42 E-value=0.13 Score=48.68 Aligned_cols=105 Identities=7% Similarity=0.061 Sum_probs=51.2
Q ss_pred ceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCCcc--hhhHH---HHhh-------hcceeEEEe
Q 007422 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA---IKIS-------RERTFGVLT 205 (604)
Q Consensus 138 l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~~d~--~~~~~---l~l~-------~~r~i~Vlt 205 (604)
+-..-+|| +...+|| ..++.+++.|.+++|+||+||++++.+. +..+. ..+. ..+.++..|
T Consensus 98 ~~~~~~~~--~~~~GGQ-----~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 98 MFSRHNEG--DDQQGSR-----YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp --------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cccccCCC--ccccCcH-----HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 33445566 3333444 3568999999999999999998876532 22222 1111 156777789
Q ss_pred cc-cCCCCCCCHHHHHhCCc-cccCCCEE--EEEeCChhhhhccccHHH
Q 007422 206 KI-DLMDKGTDAADILEGKS-YRLKFPWI--GVVNRSQADINKNVDMIA 250 (604)
Q Consensus 206 K~-D~~~~~~~~~~~l~~~~-~~l~~g~~--~v~~~s~~~i~~~~~~~~ 250 (604)
|- |+...- ...++.+... ..++..|+ +.++.+++++.+.++++.
T Consensus 171 KqqDlp~Am-s~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~ 218 (227)
T 3l82_B 171 ISQGDVKRM-PCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL 218 (227)
T ss_dssp ESSTTSCBC-CHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHT
T ss_pred CCcCccCCC-CHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHH
Confidence 96 553222 2333322111 11235665 567777888887776553
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.35 E-value=0.077 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|.|+++|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 326
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.31 E-value=0.052 Score=56.01 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCceEeeCCCCccccCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC--------Cc-chhhHHHHhh----------
Q 007422 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN--------QD-LATSDAIKIS---------- 196 (604)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~q~~~~~~~i~~~~~~~i~~~d~iIl~v~~a~--------~d-~~~~~~l~l~---------- 196 (604)
..+.+|||+|-.+. +.++..|.++++++|+|++-.. .+ -...++..+.
T Consensus 183 v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 183 EVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 249 (354)
T ss_dssp -EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred eeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence 46899999998654 5667889999999999986541 01 1111221111
Q ss_pred hcceeEEEecccCCC
Q 007422 197 RERTFGVLTKIDLMD 211 (604)
Q Consensus 197 ~~r~i~VltK~D~~~ 211 (604)
..++++|+||+|+..
T Consensus 250 ~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFE 264 (354)
T ss_dssp SCEEEEEEECHHHHH
T ss_pred CCeEEEEEECcchhh
Confidence 178999999999853
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.29 E-value=0.053 Score=52.70 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.19 E-value=0.054 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh---CCCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV---GKDF 59 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~---G~~~ 59 (604)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8653
No 329
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.18 E-value=0.053 Score=57.29 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|+.||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 330
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.16 E-value=0.039 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999963
No 331
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.14 E-value=0.054 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.14 E-value=0.047 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.++|+|+.|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999996
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.13 E-value=0.072 Score=49.97 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 334
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.06 E-value=0.041 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
..|.++|+|..|||||||+|.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999863
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.04 E-value=0.059 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.90 E-value=0.078 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999985
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.87 E-value=0.067 Score=50.09 Aligned_cols=22 Identities=50% Similarity=0.545 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 338
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.72 E-value=0.061 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999984
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.71 E-value=0.085 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999975
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.70 E-value=0.091 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.67 E-value=0.068 Score=51.52 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++++|+.|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.61 E-value=0.075 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999999985
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.48 E-value=0.06 Score=48.14 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-..++++|++|+|||||+++|.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999985
No 344
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.41 E-value=0.085 Score=55.13 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6889999999999999999996
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.38 E-value=0.072 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+|+|..||||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999873
No 346
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.07 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.-+.++|+|+.|||||||++.|.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999999973
No 347
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.36 E-value=0.092 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
+.+..+|+|+.||||||+++||.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999986
No 348
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.36 E-value=0.087 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+++||+.|||||||++.|.|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999963
No 349
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.11 E-value=0.1 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999753
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.07 E-value=0.096 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.05 E-value=0.11 Score=57.30 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+++||+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999963
No 352
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.05 E-value=0.1 Score=57.79 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 353
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.00 E-value=0.1 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999999963
No 354
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.92 E-value=0.084 Score=56.64 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-.++++|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46889999999999999999995
No 355
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.88 E-value=0.13 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~ 55 (604)
.+.|+++|.+||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999995
No 356
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.82 E-value=0.15 Score=55.76 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~ 67 (604)
.++|+|..|||||||+++|.|. +|...|.+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i 343 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKI 343 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCeEE
Confidence 6789999999999999999996 34444543
No 357
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.80 E-value=0.14 Score=56.01 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCcccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~ 66 (604)
.++++|..|||||||+++|.|.. +...|.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 324 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGS 324 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 57899999999999999999963 444443
No 358
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.79 E-value=0.11 Score=47.80 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 359
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.77 E-value=0.12 Score=47.52 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.68 E-value=0.096 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|.+|||||||++.|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999774
No 361
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.62 E-value=0.14 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999653
No 362
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.60 E-value=0.1 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
+.+..+|+|+.|||||||+++|+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44568899999999999999997
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.60 E-value=0.13 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
|.|+++|.+||||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999884
No 364
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.58 E-value=0.1 Score=57.91 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+++||+.|||||||++.|.|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999999963
No 365
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.54 E-value=0.097 Score=57.97 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+++||+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.17 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68899999999999999999963
No 367
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.47 E-value=0.16 Score=56.21 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCccccccc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP~~~~~~ 67 (604)
.++++|+.|||||||++.|.|. ++-..|.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEE
Confidence 5789999999999999999996 34334433
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.39 E-value=0.14 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+.|+++|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 369
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.38 E-value=0.13 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999853
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.31 E-value=0.14 Score=47.01 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.21 E-value=0.31 Score=44.07 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+-++++|++|+|||++++++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 372
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.21 E-value=0.14 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 373
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.16 E-value=0.12 Score=50.83 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCeEEEEEecCCCcchhhHHHHhhhcceeEEEecccCCCCCC--CHHHHHhCCccccCCCEEEEEeCChh
Q 007422 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISRERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVVNRSQA 240 (604)
Q Consensus 163 ~~~~~~~i~~~d~iIl~v~~a~~d~~~~~~l~l~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~ 240 (604)
...+...+.++|+||.|+++..........+.+...+.++|+||+|+.++.. .+.+.+. ..+... .+++.++.
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~~~~~~~~~~~----~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFK----KQGKRV-ITTHKGEP 86 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHH----HTTCCE-EECCTTSC
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHHHHHHHHHHHH----HcCCeE-EEECCCCc
Confidence 3456788999999988876543211110000012789999999999987421 1233332 122345 67777766
Q ss_pred hhhccc
Q 007422 241 DINKNV 246 (604)
Q Consensus 241 ~i~~~~ 246 (604)
+++++.
T Consensus 87 gi~~L~ 92 (262)
T 3cnl_A 87 RKVLLK 92 (262)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 665443
No 374
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.16 E-value=0.16 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.08 E-value=0.15 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999994
No 376
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.91 E-value=0.2 Score=46.68 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.3
Q ss_pred CCC-eEEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLP-AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP-~IvVvG~~saGKSSLlnaL~G 56 (604)
..| .|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445 688999999999999999853
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.90 E-value=0.15 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 378
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.85 E-value=0.14 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.578 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+++||+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999963
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.84 E-value=0.21 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
-..|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999964
No 380
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.81 E-value=0.17 Score=46.59 Aligned_cols=22 Identities=50% Similarity=0.620 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~ 55 (604)
.+.|+++|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.80 E-value=0.13 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|..||||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.77 E-value=0.16 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 383
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.72 E-value=0.3 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998764
No 384
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.70 E-value=0.13 Score=50.94 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.66 E-value=0.17 Score=47.66 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.58 E-value=0.14 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999965
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.55 E-value=0.17 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|++.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.52 E-value=0.18 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
+.|+++|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 389
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.52 E-value=0.14 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
++++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 390
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.29 E-value=0.18 Score=55.93 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999999963
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.16 E-value=0.19 Score=46.23 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.15 E-value=0.085 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 393
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.14 E-value=0.14 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999986
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.13 E-value=0.19 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999764
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.05 E-value=0.2 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+.|+++|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 396
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.05 E-value=0.21 Score=44.89 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.|++.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.02 E-value=0.2 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|+++|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999885
No 398
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=88.98 E-value=0.5 Score=46.99 Aligned_cols=89 Identities=9% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCcc-hhhHHH----Hh-------hhcceeEEEecc-cCCCCCCCHHHHHhCCc-ccc
Q 007422 162 IENMVRSYIEKPNCIILAISPANQDL-ATSDAI----KI-------SRERTFGVLTKI-DLMDKGTDAADILEGKS-YRL 227 (604)
Q Consensus 162 i~~~~~~~i~~~d~iIl~v~~a~~d~-~~~~~l----~l-------~~~r~i~VltK~-D~~~~~~~~~~~l~~~~-~~l 227 (604)
++.+++.|.+++|+||+||++++.+- ...+.+ .+ ...+.++..||- |+...- ...++.+... ..+
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am-s~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-PCFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC-CHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC-CHHHHHHHcCCccC
Confidence 48899999999999999998876542 111111 11 225777778974 764322 2333322111 112
Q ss_pred CCCEE--EEEeCChhhhhccccHHHH
Q 007422 228 KFPWI--GVVNRSQADINKNVDMIAA 251 (604)
Q Consensus 228 ~~g~~--~v~~~s~~~i~~~~~~~~~ 251 (604)
+..|+ +.++.+++|+.+.++++..
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHH
Confidence 34564 5677888998888777654
No 399
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.80 E-value=0.19 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.72 E-value=0.18 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
-..|+++|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999965
No 401
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.64 E-value=0.24 Score=54.79 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHhhhhCCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~~ 58 (604)
++++|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999974
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.52 E-value=0.22 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCCHHHHHhhhh
Q 007422 34 LPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~ 55 (604)
...|+++|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999996
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.49 E-value=0.21 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.26 E-value=0.22 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
..+..+|+|+.+|||||+++||.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34578899999999999999985
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.25 E-value=0.19 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
++++|++|+|||||+++|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.24 E-value=0.23 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.21 E-value=0.22 Score=45.64 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
+.|+++|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999985
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.20 E-value=0.23 Score=46.91 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|+|..||||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 409
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.15 E-value=0.22 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
...++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999874
No 410
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.12 E-value=0.2 Score=50.47 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=31.6
Q ss_pred HHhhcCCCeEEEEEecCCCcchhhH---HHHhh---hcceeEEEecccCCCCC
Q 007422 167 RSYIEKPNCIILAISPANQDLATSD---AIKIS---RERTFGVLTKIDLMDKG 213 (604)
Q Consensus 167 ~~~i~~~d~iIl~v~~a~~d~~~~~---~l~l~---~~r~i~VltK~D~~~~~ 213 (604)
+..+.+.|.+++|++....+..... .+..+ ..+.++|+||+|+.++.
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 3468899999887765444444332 22222 38899999999998763
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.12 E-value=0.23 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.08 E-value=0.27 Score=46.57 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
No 413
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.02 E-value=0.28 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
|.|++.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.94 E-value=0.25 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 456899999999999999999853
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.93 E-value=0.34 Score=45.10 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
...|+|+|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999863
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.87 E-value=0.2 Score=51.99 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999973
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.85 E-value=0.2 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|||||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.71 E-value=0.23 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|.+||||||+...|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999974
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.68 E-value=0.22 Score=48.65 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+|+|.+|||||||..+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999964
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.38 E-value=0.24 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998
No 421
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.32 E-value=0.05 Score=52.42 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
++|+|+.|||||||+++|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578899999999999999996
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.30 E-value=0.49 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+-+++.|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 423
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.27 E-value=1.8 Score=50.31 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHhhh
Q 007422 36 AIAVVGGQSSGKSSVLESI 54 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL 54 (604)
.++|+|+.++||||+++.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999999999
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.27 E-value=0.24 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999764
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.21 E-value=0.31 Score=46.42 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 426
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.20 E-value=0.22 Score=45.43 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|++.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999986
No 427
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.12 E-value=0.19 Score=58.39 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 428
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.09 E-value=0.69 Score=44.65 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|++.|.+||||||+.+.|.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999996
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.01 E-value=0.25 Score=47.19 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCCCc
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~lP 61 (604)
.++++|++|+|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 57899999999999999999853334
No 430
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.97 E-value=0.27 Score=59.54 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5899999999999999999996
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.95 E-value=0.24 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.++++|+.|+|||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999963
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.83 E-value=0.33 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
....|++.|.+||||||+-+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999984
No 433
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.67 E-value=0.3 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 434
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.65 E-value=0.63 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999753
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.51 E-value=0.34 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G 56 (604)
.-..|+++|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.32 E-value=0.26 Score=59.78 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|++||+.|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999995
No 437
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=86.21 E-value=0.32 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
+..-.+++|+.||||||+++||.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999985
No 438
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.08 E-value=0.67 Score=49.93 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCCCCCCCCC-eEEEEcCCCCCHHHHHhhhhCC
Q 007422 6 SLVNKIQRACTALGDHGEASALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP-~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+....++++...++... .+..+....| -|+++|++|+|||+|+++|.|.
T Consensus 38 ~~k~~l~~lv~~l~~~~---~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPS---RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCGG---GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchh---hhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44555666655555421 1112222333 3899999999999999999875
No 439
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.07 E-value=0.11 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
....++++|+.|||||||+++|.+.
T Consensus 59 ~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 59 GGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999999764
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.03 E-value=0.38 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|+++|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.00 E-value=0.32 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|.++++|++|+||||++++|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.97 E-value=0.41 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
...|+++|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999963
No 443
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.86 E-value=0.25 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999999753
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.78 E-value=0.38 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|++.|.+||||||+++.|.+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36888999999999999999864
No 445
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.71 E-value=0.43 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+.|+|+|+++||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 356899999999999999999743
No 446
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.23 E-value=0.3 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+....+++|+.|||||||++||...
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999853
No 447
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.19 E-value=0.4 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G 56 (604)
.-|.++|+|.+|||||+++|+|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999975
No 448
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=85.13 E-value=0.31 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+....+++|+.|+||||++++|.+.
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHh
Confidence 4457889999999999999999863
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.07 E-value=0.38 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
...+|+|+.|+|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468899999999999999999853
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.97 E-value=0.57 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4566899999999999999999875
No 451
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.95 E-value=0.34 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999986
No 452
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.92 E-value=1.2 Score=39.00 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999754
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.79 E-value=0.51 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhh
Q 007422 35 PAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~ 55 (604)
..|+++|.+||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.53 E-value=0.39 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-|+++|++|+||||+..+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 455
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.49 E-value=0.92 Score=39.72 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999764
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.46 E-value=0.51 Score=45.21 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G 56 (604)
....|+++|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.31 E-value=0.48 Score=45.92 Aligned_cols=22 Identities=55% Similarity=0.622 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+|.|.+||||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998854
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.29 E-value=0.7 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+.|+|+|+++||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.15 E-value=0.49 Score=47.03 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.98 E-value=0.6 Score=46.26 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999997
No 461
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.97 E-value=0.58 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+-+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999753
No 462
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=83.91 E-value=0.46 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhh
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~ 55 (604)
+..-.+++|+.||||||+++||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44678899999999999999984
No 463
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.81 E-value=0.58 Score=44.10 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|+|||||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988743
No 464
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.46 E-value=0.51 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|.++|.|++|+|||||++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.65 E-value=0.61 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+++||+.|||||||++.|.|..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999963
No 466
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.62 E-value=0.53 Score=52.79 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHhhhh
Q 007422 36 AIAVVGGQSSGKSSVLESIV 55 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~ 55 (604)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58899999999999999875
No 467
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.59 E-value=0.73 Score=42.70 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.-|++.|++|+|||+|+.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999864
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.49 E-value=0.33 Score=53.09 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5789999999999999999986
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.49 E-value=0.52 Score=54.81 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~~ 59 (604)
.++++|+.|||||||++.|.|..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999996433
No 470
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=82.37 E-value=0.72 Score=43.90 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred CCCe-EEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLPA-IAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~-IvVvG~~saGKSSLlnaL~G 56 (604)
.-|+ |+|+|+|||||+|.-..|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 56789999999999988874
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.24 E-value=0.64 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999753
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.62 E-value=0.68 Score=43.65 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
-+++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888864
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.58 E-value=0.76 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-..|+++|++++|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345889999999999999999865
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.37 E-value=1.3 Score=43.28 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.+-+.+.|++|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999753
No 475
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.80 E-value=0.78 Score=47.64 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.-+.++|+|.+|||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999753
No 476
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.50 E-value=0.93 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+-++|.|++|+||||++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999975
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.50 E-value=0.79 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999999999974
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.46 E-value=0.81 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhCC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G~ 57 (604)
+.|+|+|.++||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.32 E-value=0.65 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHhhhhCCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGKD 58 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~~ 58 (604)
.+.|+|++|||||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999864
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.30 E-value=1.2 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|.+++.|++|+||||++.++.+.
T Consensus 58 ~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 58 LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999875
No 481
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.26 E-value=0.82 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G 56 (604)
..|.++|+|.+|||||+++|+|+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999875
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.21 E-value=0.81 Score=43.92 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5888999999999999999753
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.00 E-value=0.52 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G 56 (604)
.+.|+|.|..||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 484
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.97 E-value=1.6 Score=42.69 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..-+.+.|++|+|||+|..++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999754
No 485
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=79.94 E-value=1.9 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.++|+|+.+|||||+++.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5789999999999999998643
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.64 E-value=1.5 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-|+++|++|+|||+|..++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.45 E-value=0.88 Score=43.33 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhC
Q 007422 36 AIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G 56 (604)
.++|+|++|+|||||...++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999777653
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.14 E-value=1.1 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.5
Q ss_pred CCCeEE-EEcCCCCCHHHHHhhhhC
Q 007422 33 SLPAIA-VVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 33 ~lP~Iv-VvG~~saGKSSLlnaL~G 56 (604)
..|..+ +.|++|+|||+|..+|..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566655 459999999999999974
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.94 E-value=0.96 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+.|+|+|.++||||||-..|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 490
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.63 E-value=2.2 Score=42.88 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 33 ~lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..+.|++.|++|+|||++..++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456899999999999999999643
No 491
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.34 E-value=0.86 Score=45.06 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
..-|++.|++|+|||++.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347899999999999999999864
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.14 E-value=0.8 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHhh--hhCC
Q 007422 36 AIAVVGGQSSGKSSVLES--IVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlna--L~G~ 57 (604)
.++|+|+.|||||||++. +.|.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999 5574
No 493
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.12 E-value=1.9 Score=42.68 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
-++++|++|+|||++..+|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999874
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.12 E-value=1.1 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
+.|+|+|+++||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4678899999999999999974
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.88 E-value=1.1 Score=41.91 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|+++|.+||||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=77.71 E-value=1.2 Score=42.17 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHhhhhC
Q 007422 35 PAIAVVGGQSSGKSSVLESIVG 56 (604)
Q Consensus 35 P~IvVvG~~saGKSSLlnaL~G 56 (604)
..|++-|..||||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3688889999999999999864
No 497
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=77.67 E-value=1.1 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHhhhhCC
Q 007422 36 AIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 36 ~IvVvG~~saGKSSLlnaL~G~ 57 (604)
.|+++|.+||||||+.+.|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999753
No 498
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.19 E-value=0.9 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHhhhhCC
Q 007422 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 34 lP~IvVvG~~saGKSSLlnaL~G~ 57 (604)
...++|.|++|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999874
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=77.14 E-value=1.2 Score=41.00 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
|.|+|.++||||++-+.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999743
No 500
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.12 E-value=1.5 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhhhhCC
Q 007422 37 IAVVGGQSSGKSSVLESIVGK 57 (604)
Q Consensus 37 IvVvG~~saGKSSLlnaL~G~ 57 (604)
|++.|++|+|||++..+|.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999999999753
Done!