Query 007424
Match_columns 604
No_of_seqs 155 out of 246
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 2.8E-28 6E-33 280.6 22.3 267 3-269 292-591 (1075)
2 KOG2023 Nuclear transport rece 99.9 2.7E-23 5.9E-28 228.4 14.5 223 21-249 371-613 (885)
3 KOG1241 Karyopherin (importin) 99.3 2E-10 4.3E-15 129.6 19.7 245 7-251 322-688 (859)
4 KOG2171 Karyopherin (importin) 99.3 1.7E-09 3.6E-14 126.8 27.8 268 3-270 78-416 (1075)
5 PRK09687 putative lyase; Provi 99.2 3.4E-10 7.4E-15 117.5 16.3 194 41-269 25-218 (280)
6 KOG1242 Protein containing ada 99.2 1.8E-09 3.9E-14 120.3 22.6 261 16-277 145-450 (569)
7 COG5215 KAP95 Karyopherin (imp 99.1 3.6E-09 7.8E-14 116.7 19.7 232 21-252 344-689 (858)
8 PRK09687 putative lyase; Provi 99.1 3.3E-09 7.1E-14 110.2 18.3 217 14-275 30-250 (280)
9 PRK13800 putative oxidoreducta 99.1 9.6E-09 2.1E-13 121.8 22.0 114 131-270 752-865 (897)
10 KOG2023 Nuclear transport rece 99.0 8.6E-09 1.9E-13 115.3 18.0 229 41-276 213-509 (885)
11 KOG1242 Protein containing ada 99.0 2.5E-08 5.3E-13 111.3 18.4 256 4-267 213-478 (569)
12 PRK13800 putative oxidoreducta 99.0 3.1E-08 6.8E-13 117.5 20.3 209 18-269 665-896 (897)
13 PF12348 CLASP_N: CLASP N term 98.9 1.3E-08 2.9E-13 100.7 14.4 189 41-235 5-210 (228)
14 PF01602 Adaptin_N: Adaptin N 98.7 5.3E-07 1.1E-11 99.1 17.9 218 37-270 108-331 (526)
15 KOG0213 Splicing factor 3b, su 98.6 2.8E-06 6E-11 96.5 20.1 216 21-238 732-963 (1172)
16 KOG1059 Vesicle coat complex A 98.6 8.2E-07 1.8E-11 100.6 14.9 202 52-274 153-364 (877)
17 PF10508 Proteasom_PSMB: Prote 98.5 1.3E-05 2.8E-10 89.8 22.6 223 10-237 44-327 (503)
18 PF01602 Adaptin_N: Adaptin N 98.5 2.8E-06 6.2E-11 93.4 17.1 235 21-270 58-294 (526)
19 KOG2032 Uncharacterized conser 98.5 2.1E-05 4.5E-10 86.7 22.7 257 14-270 188-529 (533)
20 KOG1240 Protein kinase contain 98.5 3.6E-06 7.9E-11 99.5 18.0 222 43-269 422-682 (1431)
21 PF13513 HEAT_EZ: HEAT-like re 98.5 1E-07 2.3E-12 74.7 3.5 53 57-109 1-55 (55)
22 PLN03200 cellulose synthase-in 98.5 9.3E-06 2E-10 102.1 21.9 234 15-270 414-678 (2102)
23 PF12348 CLASP_N: CLASP N term 98.5 6.8E-06 1.5E-10 81.4 16.8 172 18-191 20-206 (228)
24 KOG1241 Karyopherin (importin) 98.4 6.1E-06 1.3E-10 94.2 17.6 226 41-266 496-757 (859)
25 PF12755 Vac14_Fab1_bd: Vacuol 98.4 1.6E-06 3.4E-11 77.1 9.8 89 59-149 2-95 (97)
26 KOG0212 Uncharacterized conser 98.4 2.2E-05 4.8E-10 87.5 18.8 254 20-276 15-283 (675)
27 COG5215 KAP95 Karyopherin (imp 98.4 4.4E-05 9.5E-10 85.3 21.0 270 1-272 87-437 (858)
28 PLN03200 cellulose synthase-in 98.4 1.7E-05 3.7E-10 99.8 20.0 218 17-241 542-776 (2102)
29 KOG0166 Karyopherin (importin) 98.3 1.2E-05 2.5E-10 89.7 15.4 253 7-268 112-389 (514)
30 PF12460 MMS19_C: RNAPII trans 98.3 6.6E-05 1.4E-09 82.0 20.8 217 4-248 189-411 (415)
31 KOG0212 Uncharacterized conser 98.3 7.8E-05 1.7E-09 83.2 20.7 265 7-276 124-407 (675)
32 PF10508 Proteasom_PSMB: Prote 98.2 0.00017 3.7E-09 80.9 22.0 215 4-231 3-231 (503)
33 PF13646 HEAT_2: HEAT repeats; 98.2 1.9E-05 4.1E-10 66.3 10.3 88 41-146 1-88 (88)
34 KOG1248 Uncharacterized conser 98.1 0.00065 1.4E-08 81.2 25.2 258 6-263 610-889 (1176)
35 KOG0915 Uncharacterized conser 98.1 0.00014 3.1E-09 88.1 18.7 220 25-248 941-1177(1702)
36 COG1413 FOG: HEAT repeat [Ener 98.0 0.00044 9.6E-09 72.4 20.2 207 18-270 22-240 (335)
37 KOG1824 TATA-binding protein-i 98.0 0.0011 2.4E-08 77.7 24.5 246 28-277 108-408 (1233)
38 KOG0915 Uncharacterized conser 98.0 8.2E-05 1.8E-09 90.1 15.6 230 41-274 816-1112(1702)
39 PF12755 Vac14_Fab1_bd: Vacuol 98.0 2.3E-05 5.1E-10 69.7 8.5 94 179-272 3-97 (97)
40 PTZ00429 beta-adaptin; Provisi 98.0 0.0011 2.4E-08 77.7 24.6 256 12-275 110-437 (746)
41 KOG1820 Microtubule-associated 98.0 0.00024 5.1E-09 83.6 18.1 197 37-240 246-453 (815)
42 COG1413 FOG: HEAT repeat [Ener 97.9 0.0016 3.5E-08 68.2 20.9 190 37-272 103-304 (335)
43 KOG0166 Karyopherin (importin) 97.9 0.00035 7.7E-09 78.2 16.1 250 21-270 211-484 (514)
44 KOG1991 Nuclear transport rece 97.8 0.0011 2.3E-08 78.2 20.2 224 23-249 389-648 (1010)
45 cd00020 ARM Armadillo/beta-cat 97.8 8.7E-05 1.9E-09 64.5 8.4 106 40-150 8-120 (120)
46 PF12717 Cnd1: non-SMC mitotic 97.8 0.00061 1.3E-08 66.1 14.8 139 56-213 1-140 (178)
47 PTZ00429 beta-adaptin; Provisi 97.8 0.0034 7.4E-08 73.8 23.4 147 80-231 138-285 (746)
48 PF13646 HEAT_2: HEAT repeats; 97.8 0.0002 4.3E-09 60.1 9.8 86 84-187 1-88 (88)
49 KOG0213 Splicing factor 3b, su 97.8 0.005 1.1E-07 71.0 23.4 248 31-281 502-879 (1172)
50 KOG1824 TATA-binding protein-i 97.8 0.0012 2.5E-08 77.6 18.4 250 21-274 451-724 (1233)
51 TIGR02270 conserved hypothetic 97.7 0.00057 1.2E-08 75.1 15.0 151 82-270 54-205 (410)
52 TIGR02270 conserved hypothetic 97.7 0.0033 7.2E-08 69.2 20.8 118 84-229 88-205 (410)
53 KOG2259 Uncharacterized conser 97.7 0.0021 4.6E-08 73.2 18.0 217 42-271 197-474 (823)
54 cd00020 ARM Armadillo/beta-cat 97.6 0.00022 4.8E-09 61.9 7.9 109 121-230 8-119 (120)
55 PF13251 DUF4042: Domain of un 97.6 0.00069 1.5E-08 66.9 11.7 105 90-194 48-177 (182)
56 PF05004 IFRD: Interferon-rela 97.6 0.01 2.2E-07 63.0 21.0 208 4-211 40-282 (309)
57 KOG4224 Armadillo repeat prote 97.6 0.0011 2.4E-08 71.4 13.5 215 13-232 175-447 (550)
58 KOG0211 Protein phosphatase 2A 97.6 0.0033 7.2E-08 73.8 18.6 228 41-273 435-665 (759)
59 COG5181 HSH155 U2 snRNP splice 97.5 0.0016 3.5E-08 73.7 14.7 253 12-276 526-798 (975)
60 COG5064 SRP1 Karyopherin (impo 97.5 0.00058 1.3E-08 72.9 9.7 206 37-253 155-383 (526)
61 KOG2956 CLIP-associating prote 97.4 0.007 1.5E-07 67.0 18.1 201 32-240 273-487 (516)
62 KOG2956 CLIP-associating prote 97.4 0.0032 7E-08 69.5 14.8 192 8-204 287-492 (516)
63 PF02985 HEAT: HEAT repeat; I 97.4 0.00021 4.5E-09 50.4 3.7 31 83-113 1-31 (31)
64 KOG0211 Protein phosphatase 2A 97.3 0.011 2.4E-07 69.4 18.3 268 2-275 153-430 (759)
65 PF05004 IFRD: Interferon-rela 97.2 0.023 5E-07 60.4 18.5 177 57-234 57-260 (309)
66 KOG1240 Protein kinase contain 97.1 0.038 8.3E-07 66.8 20.8 235 9-243 427-746 (1431)
67 COG5240 SEC21 Vesicle coat com 97.1 0.029 6.3E-07 63.6 18.4 227 41-271 262-554 (898)
68 PF12717 Cnd1: non-SMC mitotic 97.1 0.017 3.6E-07 56.2 14.6 145 25-171 8-159 (178)
69 KOG1967 DNA repair/transcripti 97.0 0.014 2.9E-07 68.9 15.8 192 83-276 816-1028(1030)
70 PF04826 Arm_2: Armadillo-like 97.0 0.0079 1.7E-07 62.3 12.6 151 36-191 9-163 (254)
71 KOG2933 Uncharacterized conser 97.0 0.0045 9.8E-08 65.5 10.8 174 41-221 86-267 (334)
72 KOG1820 Microtubule-associated 97.0 0.02 4.4E-07 67.8 17.1 187 79-274 250-445 (815)
73 KOG1248 Uncharacterized conser 96.9 0.052 1.1E-06 65.6 19.8 231 18-249 667-918 (1176)
74 COG5181 HSH155 U2 snRNP splice 96.7 0.069 1.5E-06 61.1 17.1 180 83-276 731-916 (975)
75 KOG4653 Uncharacterized conser 96.7 0.11 2.5E-06 61.1 19.4 195 51-251 735-939 (982)
76 PF12460 MMS19_C: RNAPII trans 96.7 0.04 8.8E-07 60.4 15.2 137 30-170 259-414 (415)
77 KOG1943 Beta-tubulin folding c 96.5 0.12 2.6E-06 62.1 18.6 255 8-269 342-661 (1133)
78 KOG1078 Vesicle coat complex C 96.5 0.12 2.6E-06 60.4 17.7 220 41-271 243-531 (865)
79 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0032 7E-08 49.2 3.7 54 216-269 1-54 (55)
80 PF12719 Cnd3: Nuclear condens 96.4 0.14 2.9E-06 53.8 16.8 123 24-151 6-144 (298)
81 KOG1967 DNA repair/transcripti 96.4 0.11 2.4E-06 61.6 16.8 206 17-229 786-1022(1030)
82 PF02985 HEAT: HEAT repeat; I 96.4 0.0062 1.3E-07 42.9 4.2 30 203-232 1-30 (31)
83 PF10363 DUF2435: Protein of u 96.3 0.024 5.1E-07 50.2 8.9 78 49-130 9-87 (92)
84 PF10274 ParcG: Parkin co-regu 96.3 0.025 5.4E-07 56.1 9.8 123 117-240 35-174 (183)
85 KOG1020 Sister chromatid cohes 96.3 0.16 3.4E-06 62.9 18.2 146 17-171 792-940 (1692)
86 PF10274 ParcG: Parkin co-regu 96.2 0.021 4.6E-07 56.5 8.7 100 175-276 55-168 (183)
87 KOG1943 Beta-tubulin folding c 96.1 0.2 4.4E-06 60.3 17.6 185 81-270 676-879 (1133)
88 PF14500 MMS19_N: Dos2-interac 96.0 0.99 2.2E-05 47.1 20.3 217 18-249 12-256 (262)
89 PF08167 RIX1: rRNA processing 96.0 0.16 3.6E-06 49.0 13.4 126 41-169 23-162 (165)
90 PF11865 DUF3385: Domain of un 95.8 0.068 1.5E-06 51.6 10.0 144 41-191 8-157 (160)
91 KOG1058 Vesicle coat complex C 95.6 0.68 1.5E-05 54.4 18.4 207 37-248 128-438 (948)
92 KOG1062 Vesicle coat complex A 95.6 0.46 1E-05 55.9 17.2 231 36-273 98-397 (866)
93 KOG4653 Uncharacterized conser 95.6 1.1 2.4E-05 53.3 20.1 226 8-240 728-974 (982)
94 COG5096 Vesicle coat complex, 95.5 0.27 5.8E-06 58.0 15.1 147 29-187 40-191 (757)
95 PF03378 CAS_CSE1: CAS/CSE pro 95.5 0.41 8.9E-06 53.4 15.9 208 41-255 28-258 (435)
96 KOG4535 HEAT and armadillo rep 95.3 0.61 1.3E-05 52.5 16.1 264 5-270 107-460 (728)
97 KOG4224 Armadillo repeat prote 95.3 0.22 4.7E-06 54.3 12.4 181 84-270 210-403 (550)
98 KOG2259 Uncharacterized conser 95.3 0.71 1.5E-05 53.5 16.9 207 58-272 173-439 (823)
99 PF13251 DUF4042: Domain of un 95.3 0.33 7.1E-06 48.2 12.8 136 98-233 2-176 (182)
100 KOG0567 HEAT repeat-containing 95.0 0.28 6.1E-06 51.3 11.8 205 38-271 66-279 (289)
101 KOG2274 Predicted importin 9 [ 95.0 1.4 3E-05 52.8 18.5 190 41-231 488-689 (1005)
102 COG5096 Vesicle coat complex, 95.0 2.6 5.6E-05 50.1 20.9 145 18-171 68-213 (757)
103 smart00638 LPD_N Lipoprotein N 95.0 1.4 3.1E-05 50.1 18.6 183 21-223 372-570 (574)
104 smart00802 UME Domain in UVSB 94.9 0.12 2.7E-06 46.9 8.0 56 58-115 30-87 (107)
105 PF12231 Rif1_N: Rap1-interact 94.9 7.2 0.00016 42.5 23.7 236 31-268 78-348 (372)
106 KOG2025 Chromosome condensatio 94.8 2.4 5.3E-05 49.7 19.5 109 36-145 76-188 (892)
107 PF04826 Arm_2: Armadillo-like 94.7 0.63 1.4E-05 48.4 13.7 178 87-273 17-203 (254)
108 PF08064 UME: UME (NUC010) dom 94.6 0.19 4E-06 45.5 8.3 72 56-129 28-101 (107)
109 PF05536 Neurochondrin: Neuroc 94.6 7 0.00015 44.9 22.8 221 9-234 7-264 (543)
110 KOG0803 Predicted E3 ubiquitin 94.5 1.5 3.3E-05 54.8 18.3 210 5-215 39-289 (1312)
111 KOG1991 Nuclear transport rece 94.5 3 6.5E-05 50.4 19.9 186 25-212 482-711 (1010)
112 KOG2160 Armadillo/beta-catenin 94.5 1.1 2.5E-05 48.4 15.3 191 41-233 78-284 (342)
113 PF08506 Cse1: Cse1; InterPro 94.5 0.099 2.2E-06 57.0 7.4 128 17-145 222-370 (370)
114 COG5064 SRP1 Karyopherin (impo 94.4 0.64 1.4E-05 50.4 13.0 224 4-231 68-314 (526)
115 KOG2160 Armadillo/beta-catenin 94.3 1.7 3.6E-05 47.2 16.0 173 9-190 86-281 (342)
116 COG5095 TAF6 Transcription ini 94.2 0.27 5.8E-06 52.4 9.6 66 180-245 254-330 (450)
117 cd08050 TAF6 TATA Binding Prot 94.2 0.69 1.5E-05 50.0 13.0 131 119-259 177-325 (343)
118 COG5656 SXM1 Importin, protein 94.1 3.6 7.8E-05 48.6 18.9 150 56-209 429-587 (970)
119 KOG1992 Nuclear export recepto 94.1 1.7 3.7E-05 51.6 16.5 215 17-234 373-626 (960)
120 PF08167 RIX1: rRNA processing 94.0 2 4.2E-05 41.6 14.5 133 77-211 20-164 (165)
121 PF12530 DUF3730: Protein of u 93.8 6.7 0.00014 40.0 18.8 202 13-225 9-233 (234)
122 KOG1993 Nuclear transport rece 93.8 2.3 5E-05 50.4 16.6 202 41-246 433-662 (978)
123 PF08064 UME: UME (NUC010) dom 93.8 0.43 9.2E-06 43.1 8.9 88 159-248 8-101 (107)
124 PF01347 Vitellogenin_N: Lipop 93.7 1.7 3.7E-05 49.7 15.9 183 21-225 410-616 (618)
125 PF01347 Vitellogenin_N: Lipop 93.7 3.3 7.1E-05 47.4 18.1 188 26-234 349-556 (618)
126 KOG2022 Nuclear transport rece 93.5 11 0.00025 45.3 21.8 252 18-279 522-830 (982)
127 KOG4535 HEAT and armadillo rep 93.1 1.2 2.6E-05 50.2 12.6 232 41-275 255-516 (728)
128 PF11865 DUF3385: Domain of un 92.9 1.2 2.6E-05 43.1 11.1 146 81-234 9-160 (160)
129 KOG2549 Transcription initiati 92.9 1.4 2.9E-05 50.3 12.9 125 120-254 207-350 (576)
130 PF12765 Cohesin_HEAT: HEAT re 92.7 0.11 2.5E-06 39.4 3.0 27 80-106 16-42 (42)
131 KOG2137 Protein kinase [Signal 92.5 1.6 3.5E-05 51.0 13.2 129 79-213 386-519 (700)
132 PF03224 V-ATPase_H_N: V-ATPas 92.4 1.3 2.8E-05 46.8 11.5 160 5-174 56-251 (312)
133 KOG1060 Vesicle coat complex A 92.3 16 0.00035 43.7 20.7 72 175-251 370-441 (968)
134 KOG1061 Vesicle coat complex A 92.2 5.2 0.00011 47.3 16.7 177 41-234 51-231 (734)
135 KOG1993 Nuclear transport rece 92.1 7.4 0.00016 46.4 17.6 206 3-212 521-750 (978)
136 KOG4413 26S proteasome regulat 92.0 13 0.00028 40.6 18.1 62 213-276 315-378 (524)
137 KOG2022 Nuclear transport rece 91.9 9.2 0.0002 46.0 18.3 186 21-209 439-639 (982)
138 smart00802 UME Domain in UVSB 91.8 0.79 1.7E-05 41.8 7.8 90 158-249 7-102 (107)
139 KOG2032 Uncharacterized conser 91.8 6.3 0.00014 44.7 16.1 225 4-231 255-531 (533)
140 smart00638 LPD_N Lipoprotein N 91.7 19 0.00042 41.1 20.7 216 24-267 311-540 (574)
141 KOG0392 SNF2 family DNA-depend 91.7 1.6 3.5E-05 53.9 12.2 178 99-283 750-936 (1549)
142 KOG1020 Sister chromatid cohes 91.6 3.2 6.9E-05 52.2 14.7 161 99-270 794-959 (1692)
143 KOG1062 Vesicle coat complex A 91.5 1.4 3.1E-05 52.0 11.2 121 83-211 108-228 (866)
144 KOG2062 26S proteasome regulat 91.5 5.4 0.00012 47.2 15.6 92 161-257 587-679 (929)
145 KOG1059 Vesicle coat complex A 91.3 16 0.00035 43.3 19.2 118 3-130 251-381 (877)
146 PF12074 DUF3554: Domain of un 91.2 13 0.00029 39.5 17.7 156 77-236 56-240 (339)
147 PF05918 API5: Apoptosis inhib 91.1 9.8 0.00021 44.0 17.2 104 17-130 34-140 (556)
148 PLN03076 ARF guanine nucleotid 91.0 20 0.00042 46.9 21.4 124 28-151 1071-1213(1780)
149 KOG1837 Uncharacterized conser 90.8 10 0.00022 48.2 17.9 214 21-240 1365-1620(1621)
150 KOG0168 Putative ubiquitin fus 90.6 5.8 0.00012 47.6 14.9 163 7-172 170-390 (1051)
151 KOG2933 Uncharacterized conser 90.5 3.3 7.2E-05 44.5 11.9 186 81-274 87-279 (334)
152 cd08050 TAF6 TATA Binding Prot 90.4 4.3 9.3E-05 43.9 13.1 131 18-150 190-340 (343)
153 PF01603 B56: Protein phosphat 90.3 16 0.00035 40.4 17.7 203 58-274 190-405 (409)
154 KOG2062 26S proteasome regulat 90.2 3.8 8.2E-05 48.4 12.9 197 52-272 528-729 (929)
155 PF10521 DUF2454: Protein of u 90.2 5 0.00011 42.0 13.0 141 75-215 112-278 (282)
156 KOG1060 Vesicle coat complex A 90.0 11 0.00023 45.1 16.4 229 17-263 333-562 (968)
157 KOG4413 26S proteasome regulat 89.9 20 0.00043 39.2 17.2 207 29-238 23-252 (524)
158 KOG0392 SNF2 family DNA-depend 89.8 1.8 4E-05 53.3 10.4 165 21-191 749-925 (1549)
159 PF05804 KAP: Kinesin-associat 89.7 7.1 0.00015 46.3 15.1 178 40-233 332-519 (708)
160 PF00514 Arm: Armadillo/beta-c 89.7 0.52 1.1E-05 34.7 3.9 29 83-111 13-41 (41)
161 PF10363 DUF2435: Protein of u 89.6 3.1 6.7E-05 36.8 9.4 72 82-154 3-76 (92)
162 PF12397 U3snoRNP10: U3 small 89.5 3.5 7.7E-05 37.4 10.0 72 78-152 2-76 (121)
163 COG5240 SEC21 Vesicle coat com 89.5 2.3 5E-05 48.9 10.3 141 21-169 391-536 (898)
164 KOG2025 Chromosome condensatio 89.1 55 0.0012 39.1 21.0 176 79-269 82-291 (892)
165 COG5116 RPN2 26S proteasome re 89.0 2.5 5.5E-05 48.6 10.2 121 41-174 553-674 (926)
166 COG5095 TAF6 Transcription ini 88.8 8.4 0.00018 41.5 13.3 192 79-283 198-419 (450)
167 cd00197 VHS_ENTH_ANTH VHS, ENT 88.8 2.1 4.5E-05 38.5 7.9 75 198-272 33-115 (115)
168 KOG1517 Guanine nucleotide bin 88.4 12 0.00026 46.0 15.5 219 37-268 470-728 (1387)
169 KOG2274 Predicted importin 9 [ 88.4 29 0.00063 42.1 18.5 231 5-240 2-268 (1005)
170 PF08389 Xpo1: Exportin 1-like 87.7 2.3 5E-05 38.7 7.6 112 30-145 13-148 (148)
171 PF12830 Nipped-B_C: Sister ch 87.0 17 0.00036 35.9 13.6 134 41-191 6-140 (187)
172 PF13001 Ecm29: Proteasome sta 86.9 7.9 0.00017 44.0 12.8 196 65-272 223-443 (501)
173 PF12719 Cnd3: Nuclear condens 86.8 11 0.00023 39.7 12.8 122 146-270 8-141 (298)
174 PF08767 CRM1_C: CRM1 C termin 86.6 23 0.0005 37.9 15.5 158 41-199 69-255 (319)
175 KOG1243 Protein kinase [Genera 86.4 2.8 6.2E-05 48.9 8.9 197 21-226 307-510 (690)
176 PF12530 DUF3730: Protein of u 86.1 42 0.00092 34.2 20.2 183 52-249 10-209 (234)
177 PF13001 Ecm29: Proteasome sta 86.1 17 0.00037 41.3 14.9 205 22-265 254-481 (501)
178 COG5116 RPN2 26S proteasome re 86.0 4.7 0.0001 46.5 10.1 154 86-255 520-674 (926)
179 KOG2149 Uncharacterized conser 85.3 7.6 0.00017 42.9 11.1 111 41-156 60-176 (393)
180 PF08623 TIP120: TATA-binding 85.0 7.6 0.00016 38.3 9.9 96 75-172 2-116 (169)
181 KOG1992 Nuclear export recepto 84.9 19 0.00041 43.3 14.5 191 42-234 455-671 (960)
182 PF04510 DUF577: Family of unk 84.8 11 0.00025 37.3 10.9 106 3-115 2-120 (174)
183 KOG0414 Chromosome condensatio 84.7 5.3 0.00012 49.2 10.3 168 39-215 914-1105(1251)
184 KOG2137 Protein kinase [Signal 84.7 26 0.00056 41.5 15.5 116 19-138 364-484 (700)
185 PF10521 DUF2454: Protein of u 84.4 41 0.0009 35.2 15.8 130 120-250 119-272 (282)
186 PF03224 V-ATPase_H_N: V-ATPas 83.8 6.9 0.00015 41.3 9.8 143 41-187 57-223 (312)
187 PF10350 DUF2428: Putative dea 83.8 14 0.00031 38.2 11.9 159 59-217 63-255 (255)
188 PF05327 RRN3: RNA polymerase 83.3 28 0.00061 40.2 15.2 144 22-170 53-213 (563)
189 KOG1243 Protein kinase [Genera 83.2 1.5 3.4E-05 51.0 5.0 175 4-181 326-505 (690)
190 KOG0567 HEAT repeat-containing 83.0 70 0.0015 34.1 16.5 186 12-237 72-286 (289)
191 PF14500 MMS19_N: Dos2-interac 82.2 69 0.0015 33.5 16.7 186 13-207 48-255 (262)
192 PF08161 NUC173: NUC173 domain 82.0 24 0.00053 35.4 12.4 127 136-276 15-158 (198)
193 KOG2081 Nuclear transport regu 81.7 55 0.0012 37.8 16.2 107 3-113 387-497 (559)
194 PF12074 DUF3554: Domain of un 81.7 78 0.0017 33.7 18.0 202 6-212 20-254 (339)
195 KOG1293 Proteins containing ar 80.9 39 0.00085 39.7 14.9 140 6-151 378-534 (678)
196 KOG1077 Vesicle coat complex A 80.9 1E+02 0.0023 36.9 18.2 251 5-270 109-396 (938)
197 PF08569 Mo25: Mo25-like; Int 80.8 91 0.002 33.9 17.5 105 166-270 168-281 (335)
198 cd00256 VATPase_H VATPase_H, r 80.4 1.1E+02 0.0023 34.6 19.6 164 3-174 52-240 (429)
199 PF11698 V-ATPase_H_C: V-ATPas 80.4 5.7 0.00012 37.1 6.7 69 82-150 43-115 (119)
200 PF05804 KAP: Kinesin-associat 79.7 1.5E+02 0.0032 35.7 21.2 241 17-272 382-649 (708)
201 KOG3961 Uncharacterized conser 79.4 16 0.00035 37.7 10.1 113 158-274 114-241 (262)
202 KOG0168 Putative ubiquitin fus 79.0 46 0.00099 40.4 14.8 175 75-276 145-328 (1051)
203 PF11864 DUF3384: Domain of un 78.9 1.2E+02 0.0026 34.2 19.4 143 9-190 181-329 (464)
204 KOG2081 Nuclear transport regu 78.6 36 0.00078 39.3 13.5 145 21-171 368-519 (559)
205 KOG2842 Interferon-related pro 78.5 56 0.0012 36.4 14.4 198 57-255 74-301 (427)
206 KOG1061 Vesicle coat complex A 78.0 22 0.00048 42.2 12.0 133 41-174 119-251 (734)
207 PF08389 Xpo1: Exportin 1-like 77.9 14 0.0003 33.5 8.5 63 161-226 81-148 (148)
208 PF14631 FancD2: Fanconi anaem 77.6 57 0.0012 42.0 16.3 214 38-263 430-656 (1426)
209 PF03378 CAS_CSE1: CAS/CSE pro 76.6 84 0.0018 35.4 15.7 226 3-231 25-272 (435)
210 COG5218 YCG1 Chromosome conden 76.4 88 0.0019 36.8 15.6 159 80-249 89-278 (885)
211 KOG2973 Uncharacterized conser 75.3 11 0.00023 40.8 7.9 86 48-135 8-97 (353)
212 PF11701 UNC45-central: Myosin 75.2 5.9 0.00013 38.0 5.5 147 79-228 4-156 (157)
213 KOG4524 Uncharacterized conser 74.3 20 0.00043 43.7 10.4 93 80-173 801-900 (1014)
214 KOG0891 DNA-dependent protein 73.9 1.1E+02 0.0024 41.3 17.7 114 41-155 91-209 (2341)
215 PF04388 Hamartin: Hamartin pr 73.8 42 0.0009 39.8 13.0 127 32-171 28-161 (668)
216 KOG1077 Vesicle coat complex A 73.4 2.2E+02 0.0047 34.4 23.4 95 28-129 312-413 (938)
217 KOG1949 Uncharacterized conser 72.7 1.1E+02 0.0023 36.9 15.3 151 121-276 174-335 (1005)
218 PF00514 Arm: Armadillo/beta-c 72.4 6.8 0.00015 28.7 4.1 28 203-230 13-40 (41)
219 smart00185 ARM Armadillo/beta- 72.0 4.7 0.0001 28.7 3.1 28 83-110 13-40 (41)
220 KOG1851 Uncharacterized conser 71.2 1.2E+02 0.0027 39.2 16.3 149 21-169 1503-1657(1710)
221 PF03130 HEAT_PBS: PBS lyase H 71.0 5.9 0.00013 27.1 3.2 25 98-129 1-25 (27)
222 KOG1525 Sister chromatid cohes 70.7 42 0.00091 42.5 12.5 241 21-272 201-472 (1266)
223 COG5218 YCG1 Chromosome conden 69.9 15 0.00033 42.7 7.9 80 199-278 88-167 (885)
224 PF11919 DUF3437: Domain of un 69.6 8.8 0.00019 34.0 4.8 52 58-110 4-57 (90)
225 KOG1949 Uncharacterized conser 69.3 1.1E+02 0.0024 36.8 14.5 144 46-191 177-331 (1005)
226 PF12830 Nipped-B_C: Sister ch 68.5 42 0.0009 33.1 9.9 97 159-276 5-101 (187)
227 KOG1822 Uncharacterized conser 68.5 1.1E+02 0.0024 40.3 15.3 199 36-234 868-1091(2067)
228 PF12231 Rif1_N: Rap1-interact 68.3 1.9E+02 0.0041 31.7 21.0 249 17-275 5-303 (372)
229 smart00185 ARM Armadillo/beta- 67.7 7 0.00015 27.7 3.2 28 203-230 13-40 (41)
230 PF12054 DUF3535: Domain of un 67.4 2.2E+02 0.0048 32.1 19.0 94 21-114 103-211 (441)
231 KOG1851 Uncharacterized conser 66.9 2.8E+02 0.006 36.3 18.0 175 59-240 1503-1687(1710)
232 KOG1517 Guanine nucleotide bin 66.7 71 0.0015 39.8 12.7 96 56-152 570-673 (1387)
233 KOG4500 Rho/Rac GTPase guanine 66.6 39 0.00084 38.3 9.9 135 42-177 314-460 (604)
234 PF12054 DUF3535: Domain of un 66.5 15 0.00033 41.2 7.1 53 121-173 313-365 (441)
235 KOG2021 Nuclear mRNA export fa 66.3 51 0.0011 39.6 11.2 76 21-96 506-590 (980)
236 KOG4199 Uncharacterized conser 65.2 2.3E+02 0.005 31.5 15.2 166 17-187 254-440 (461)
237 KOG1058 Vesicle coat complex C 64.9 1.7E+02 0.0037 35.4 15.0 139 7-153 282-428 (948)
238 KOG0946 ER-Golgi vesicle-tethe 64.8 1.6E+02 0.0034 35.9 14.7 196 80-275 20-245 (970)
239 PF12765 Cohesin_HEAT: HEAT re 64.1 12 0.00027 28.3 4.1 41 185-226 2-42 (42)
240 PF07571 DUF1546: Protein of u 63.8 11 0.00023 33.3 4.2 46 213-258 17-62 (92)
241 PRK14707 hypothetical protein; 63.5 5.3E+02 0.011 35.2 22.4 248 8-274 545-823 (2710)
242 KOG1822 Uncharacterized conser 62.7 3.6E+02 0.0078 36.0 18.2 242 18-270 790-1067(2067)
243 KOG1078 Vesicle coat complex C 62.1 44 0.00095 40.1 9.8 103 45-151 431-533 (865)
244 KOG2149 Uncharacterized conser 60.7 1.2E+02 0.0027 33.8 12.4 125 121-246 59-185 (393)
245 PF08623 TIP120: TATA-binding 60.6 47 0.001 32.8 8.5 119 156-276 3-152 (169)
246 PF00790 VHS: VHS domain; Int 60.6 87 0.0019 29.3 10.0 69 122-191 44-118 (140)
247 PF04118 Dopey_N: Dopey, N-ter 60.4 1.2E+02 0.0025 32.8 12.0 133 5-142 55-193 (307)
248 COG5098 Chromosome condensatio 59.9 53 0.0012 39.2 9.8 107 3-109 294-413 (1128)
249 PF11698 V-ATPase_H_C: V-ATPas 59.6 11 0.00024 35.2 3.7 68 4-71 43-114 (119)
250 KOG0413 Uncharacterized conser 59.2 29 0.00064 42.6 7.8 104 41-151 970-1074(1529)
251 PF04003 Utp12: Dip2/Utp12 Fam 58.8 25 0.00054 31.1 5.8 85 25-109 14-103 (110)
252 PF08767 CRM1_C: CRM1 C termin 58.5 2.6E+02 0.0056 30.0 14.4 96 19-115 90-198 (319)
253 COG5656 SXM1 Importin, protein 58.0 4.3E+02 0.0093 32.3 17.4 127 43-169 460-587 (970)
254 PRK09169 hypothetical protein; 57.8 6.5E+02 0.014 34.4 19.7 236 7-251 502-763 (2316)
255 KOG2549 Transcription initiati 57.0 3.4E+02 0.0073 31.8 15.3 185 41-229 205-420 (576)
256 PF11919 DUF3437: Domain of un 56.9 24 0.00051 31.3 5.1 57 218-275 5-61 (90)
257 PF12397 U3snoRNP10: U3 small 56.5 35 0.00077 30.9 6.4 70 41-112 4-75 (121)
258 cd03568 VHS_STAM VHS domain fa 56.4 1.8E+02 0.004 27.7 11.5 71 121-192 38-111 (144)
259 PF00790 VHS: VHS domain; Int 55.8 56 0.0012 30.6 7.8 73 201-273 41-119 (140)
260 PF01417 ENTH: ENTH domain; I 55.6 1.1E+02 0.0025 27.9 9.7 101 167-271 8-120 (125)
261 PF02854 MIF4G: MIF4G domain; 55.1 1.2E+02 0.0025 28.8 10.1 43 8-51 3-45 (209)
262 PF08161 NUC173: NUC173 domain 54.3 31 0.00068 34.7 6.2 72 166-237 4-77 (198)
263 PF06685 DUF1186: Protein of u 53.9 2.3E+02 0.0049 29.8 12.5 75 89-173 118-196 (249)
264 smart00543 MIF4G Middle domain 52.8 2.1E+02 0.0045 27.1 14.1 43 8-52 3-45 (200)
265 PF14631 FancD2: Fanconi anaem 52.4 4.2E+02 0.0092 34.5 16.8 91 2-96 205-295 (1426)
266 KOG1293 Proteins containing ar 52.2 3.8E+02 0.0082 32.0 14.9 185 41-229 330-531 (678)
267 PF14668 RICTOR_V: Rapamycin-i 52.1 24 0.00053 30.1 4.3 54 59-112 3-59 (73)
268 PF08506 Cse1: Cse1; InterPro 52.1 1.7E+02 0.0037 32.2 11.9 124 57-186 225-370 (370)
269 KOG2021 Nuclear mRNA export fa 51.5 5.4E+02 0.012 31.5 18.8 84 77-164 187-276 (980)
270 smart00567 EZ_HEAT E-Z type HE 50.9 25 0.00055 24.0 3.5 26 97-129 2-27 (30)
271 cd03561 VHS VHS domain family; 50.9 2.1E+02 0.0045 26.6 11.8 96 91-192 13-113 (133)
272 PF14664 RICTOR_N: Rapamycin-i 50.3 3.9E+02 0.0084 29.5 19.4 208 18-232 38-270 (371)
273 PF12031 DUF3518: Domain of un 50.3 30 0.00065 36.2 5.4 120 98-217 82-231 (257)
274 KOG0413 Uncharacterized conser 50.2 1.2E+02 0.0026 37.6 10.8 145 58-210 946-1094(1529)
275 PF12612 TFCD_C: Tubulin foldi 49.6 2.7E+02 0.0058 27.5 13.6 93 161-257 69-166 (193)
276 KOG0414 Chromosome condensatio 49.6 6.7E+02 0.015 32.0 19.2 216 41-270 194-426 (1251)
277 PF12783 Sec7_N: Guanine nucle 49.1 78 0.0017 30.2 7.8 93 20-112 37-147 (168)
278 cd03569 VHS_Hrs_Vps27p VHS dom 49.0 2.4E+02 0.0052 26.8 12.5 70 121-191 42-114 (142)
279 PF11864 DUF3384: Domain of un 48.2 4.5E+02 0.0097 29.6 22.1 234 22-264 7-278 (464)
280 PF08713 DNA_alkylation: DNA a 48.0 16 0.00034 35.8 2.9 78 81-162 119-196 (213)
281 KOG0946 ER-Golgi vesicle-tethe 46.6 6.5E+02 0.014 31.0 17.6 187 45-231 124-346 (970)
282 cd03572 ENTH_epsin_related ENT 45.1 1.2E+02 0.0026 28.4 8.1 88 21-110 17-118 (122)
283 PRK14707 hypothetical protein; 45.0 8.2E+02 0.018 33.5 17.3 177 5-188 962-1157(2710)
284 PF08713 DNA_alkylation: DNA a 44.5 92 0.002 30.4 7.7 64 45-112 122-185 (213)
285 PF07571 DUF1546: Protein of u 44.4 55 0.0012 28.9 5.5 59 55-113 18-80 (92)
286 PF10350 DUF2428: Putative dea 43.8 3.9E+02 0.0084 27.6 12.7 125 121-245 97-242 (255)
287 KOG4524 Uncharacterized conser 43.5 7.6E+02 0.016 30.9 19.7 117 158-274 799-925 (1014)
288 PF14837 INTS5_N: Integrator c 41.8 4.1E+02 0.0089 27.4 13.0 51 23-74 2-56 (213)
289 KOG1837 Uncharacterized conser 41.5 93 0.002 40.1 8.5 77 38-114 1536-1614(1621)
290 PLN03076 ARF guanine nucleotid 41.4 1E+03 0.023 31.9 21.6 255 9-268 1138-1485(1780)
291 PF06685 DUF1186: Protein of u 41.3 4.5E+02 0.0097 27.6 14.8 107 75-196 31-147 (249)
292 COG5314 Conjugal transfer/entr 41.2 74 0.0016 33.2 6.5 60 447-507 53-112 (252)
293 cd03561 VHS VHS domain family; 41.1 1.6E+02 0.0034 27.4 8.3 74 201-274 36-114 (133)
294 KOG3961 Uncharacterized conser 40.9 90 0.0019 32.5 7.0 91 121-212 115-209 (262)
295 PF02465 FliD_N: Flagellar hoo 40.9 93 0.002 27.2 6.4 54 445-498 4-57 (99)
296 KOG1525 Sister chromatid cohes 40.6 9.4E+02 0.02 31.2 20.3 69 200-272 257-326 (1266)
297 PF05536 Neurochondrin: Neuroc 40.2 3.5E+02 0.0076 31.4 12.6 174 97-275 72-264 (543)
298 cd03572 ENTH_epsin_related ENT 40.2 1.3E+02 0.0028 28.3 7.4 36 158-193 34-69 (122)
299 cd06561 AlkD_like A new struct 39.3 71 0.0015 30.8 5.9 75 85-162 108-182 (197)
300 PF12333 Ipi1_N: Rix1 complex 39.0 1.4E+02 0.0031 26.7 7.3 55 75-129 4-62 (102)
301 PF10805 DUF2730: Protein of u 38.9 59 0.0013 29.4 5.0 49 448-496 45-98 (106)
302 smart00288 VHS Domain present 38.7 3.3E+02 0.0071 25.4 10.8 70 121-191 38-111 (133)
303 cd03567 VHS_GGA VHS domain fam 38.4 3.6E+02 0.0078 25.7 11.2 69 122-191 40-116 (139)
304 PRK09169 hypothetical protein; 36.6 1.3E+03 0.029 31.7 19.1 210 7-225 544-776 (2316)
305 cd03568 VHS_STAM VHS domain fa 35.6 3.7E+02 0.008 25.7 10.0 72 81-153 36-113 (144)
306 KOG1048 Neural adherens juncti 35.1 4.9E+02 0.011 31.4 12.7 150 121-275 519-690 (717)
307 COG5098 Chromosome condensatio 35.0 9.3E+02 0.02 29.5 18.6 109 158-267 295-410 (1128)
308 KOG0891 DNA-dependent protein 34.4 1E+03 0.022 32.9 16.5 117 162-278 93-210 (2341)
309 PF11701 UNC45-central: Myosin 34.0 1.8E+02 0.0039 27.9 7.7 94 132-231 16-117 (157)
310 PF06371 Drf_GBD: Diaphanous G 33.7 78 0.0017 30.2 5.2 29 202-230 158-186 (187)
311 KOG2188 Predicted RNA-binding 33.1 3.9E+02 0.0084 31.7 11.2 42 137-178 379-422 (650)
312 PF07539 DRIM: Down-regulated 32.9 62 0.0013 30.9 4.3 57 202-271 17-73 (141)
313 KOG0889 Histone acetyltransfer 32.3 6.2E+02 0.013 36.0 14.0 72 42-113 983-1064(3550)
314 PF11791 Aconitase_B_N: Aconit 31.3 1.5E+02 0.0033 29.1 6.5 75 27-109 41-121 (154)
315 KOG1823 DRIM (Down-regulated i 31.0 9.7E+02 0.021 31.2 14.8 126 88-219 854-989 (1364)
316 PF04582 Reo_sigmaC: Reovirus 30.2 17 0.00037 39.4 0.0 63 442-508 25-87 (326)
317 PF09268 Clathrin-link: Clathr 30.1 26 0.00057 24.0 0.9 21 82-102 3-23 (24)
318 PF10046 BLOC1_2: Biogenesis o 30.1 1.6E+02 0.0034 26.3 6.2 44 445-496 42-85 (99)
319 PF14868 DUF4487: Domain of un 28.9 2.1E+02 0.0045 33.5 8.3 90 24-113 460-554 (559)
320 PF06012 DUF908: Domain of Unk 28.6 1.3E+02 0.0029 32.3 6.4 89 24-112 194-298 (329)
321 PF12333 Ipi1_N: Rix1 complex 28.4 82 0.0018 28.2 4.0 54 41-94 9-65 (102)
322 smart00288 VHS Domain present 28.3 4.9E+02 0.011 24.2 10.4 83 81-164 36-126 (133)
323 PF08324 PUL: PUL domain; Int 28.1 6.5E+02 0.014 25.6 11.6 141 8-149 43-230 (268)
324 KOG1848 Uncharacterized conser 28.1 1.5E+03 0.033 29.8 18.5 108 163-270 998-1130(1610)
325 PF14868 DUF4487: Domain of un 27.7 1.1E+03 0.023 27.9 17.3 82 146-233 466-554 (559)
326 cd03569 VHS_Hrs_Vps27p VHS dom 27.6 5.3E+02 0.012 24.4 10.1 73 80-153 39-117 (142)
327 TIGR00207 fliG flagellar motor 27.3 7.2E+02 0.016 27.0 11.7 126 57-188 10-144 (338)
328 COG5412 Phage-related protein 26.9 8.6E+02 0.019 29.0 12.6 26 88-113 213-238 (637)
329 PF14228 MOR2-PAG1_mid: Cell m 26.8 1.4E+03 0.031 29.2 17.2 152 24-187 489-645 (1120)
330 PF11935 DUF3453: Domain of un 26.7 7.1E+02 0.015 25.5 14.8 180 54-249 4-210 (239)
331 PF04513 Baculo_PEP_C: Baculov 26.6 1.8E+02 0.004 28.0 6.2 53 445-497 20-76 (140)
332 KOG3613 Dopey and related pred 26.2 7.1E+02 0.015 33.1 12.6 161 75-240 1390-1569(1749)
333 KOG3723 PH domain protein Melt 26.0 7.7E+02 0.017 29.3 11.8 79 33-113 189-268 (851)
334 KOG1988 Uncharacterized conser 25.9 1.3E+03 0.029 28.7 14.2 208 17-260 75-308 (970)
335 PF07217 Het-C: Heterokaryon i 25.5 2.9E+02 0.0063 32.5 8.6 55 75-131 420-478 (606)
336 PF07539 DRIM: Down-regulated 25.1 3.2E+02 0.007 26.0 7.6 78 121-211 17-97 (141)
337 PF01603 B56: Protein phosphat 25.1 9.8E+02 0.021 26.6 19.9 250 21-274 106-372 (409)
338 PF08146 BP28CT: BP28CT (NUC21 24.7 5.2E+02 0.011 24.8 9.1 93 137-232 37-148 (153)
339 PF08625 Utp13: Utp13 specific 24.6 1.6E+02 0.0035 28.1 5.5 49 8-56 28-78 (141)
340 PF00517 GP41: Retroviral enve 24.4 2E+02 0.0042 29.1 6.4 59 455-521 17-83 (204)
341 PF04388 Hamartin: Hamartin pr 24.4 2.6E+02 0.0055 33.4 8.2 83 42-129 69-157 (668)
342 cd03565 VHS_Tom1 VHS domain fa 24.4 6.1E+02 0.013 24.0 11.4 70 122-191 40-115 (141)
343 KOG3678 SARM protein (with ste 23.7 1.1E+03 0.024 27.5 12.3 209 9-234 225-455 (832)
344 PF12531 DUF3731: DNA-K relate 23.0 2.2E+02 0.0048 30.0 6.5 109 61-174 99-213 (249)
345 PF08146 BP28CT: BP28CT (NUC21 22.4 4.8E+02 0.01 25.0 8.3 74 22-95 38-121 (153)
346 KOG4541 Nuclear transport rece 22.2 2.6E+02 0.0055 32.9 7.2 120 62-187 576-711 (748)
347 cd00256 VATPase_H VATPase_H, r 22.1 1.5E+02 0.0033 33.4 5.6 66 84-149 355-424 (429)
348 PF05997 Nop52: Nucleolar prot 22.1 5.7E+02 0.012 25.9 9.2 70 86-155 4-77 (217)
349 PRK11072 bifunctional glutamin 22.0 7.4E+02 0.016 30.9 11.7 58 118-179 504-567 (943)
350 PF06476 DUF1090: Protein of u 21.8 60 0.0013 30.1 1.9 15 483-497 42-56 (115)
351 PF12531 DUF3731: DNA-K relate 21.7 9.6E+02 0.021 25.3 13.5 173 80-254 29-216 (249)
352 COG4889 Predicted helicase [Ge 21.6 79 0.0017 39.0 3.2 34 118-154 727-760 (1518)
353 TIGR02976 phageshock_pspB phag 21.5 56 0.0012 28.2 1.6 19 477-495 49-67 (75)
354 PF05918 API5: Apoptosis inhib 20.6 3E+02 0.0065 32.2 7.6 100 167-274 64-165 (556)
355 smart00544 MA3 Domain in DAP-5 20.5 3.8E+02 0.0081 23.6 6.8 51 41-95 38-89 (113)
356 PF06667 PspB: Phage shock pro 20.5 61 0.0013 28.0 1.6 19 477-495 49-67 (75)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-28 Score=280.57 Aligned_cols=267 Identities=15% Similarity=0.160 Sum_probs=224.1
Q ss_pred hHHHHHHHHHhhhcCCh------------h---HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDR------------D---TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHV 66 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDr------------D---T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~l 66 (604)
.+|--.++..++.+.|+ | ++++|.+.||.+|.+|+|++ +|+++.++....+|++|.+|++++++
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44555666666666544 2 99999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHcc-CCChhHHHH
Q 007424 67 IATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFT-EQDTNAQVG 140 (604)
Q Consensus 67 LGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~-eqdk~vQ~~ 140 (604)
|+++++|| .+.++|++||+.|+..|+||++.||.|||+|+|+|+..+.. ...|..++|++..++. .+++.||..
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHH
Confidence 99999999 88899999999999999999999999999999999999942 1245577776666654 457789999
Q ss_pred HHHHHHHHHhhcC-CCChhhHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC----
Q 007424 141 AALCLAATIDAAQ-DPDAGKLGRMEVRLERL-LKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS---- 213 (604)
Q Consensus 141 AA~cLaalIE~a~-d~i~~yL~~L~~RL~kl-L~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s---- 213 (604)
||.||..+.|... +.+.+||+.||.+++.+ +.++...+|..++.+|||+|. |+..|.|||+.+||.|..+|.+
T Consensus 452 Aa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 452 AAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK 531 (1075)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch
Confidence 9999999988764 55679999999955554 455577899999999999996 6678999999999999999963
Q ss_pred CcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcc---hhHHHHHHHHHHHH
Q 007424 214 QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK---VKVVREVMNKMIEA 269 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDK---vK~VRda~~~AL~~ 269 (604)
+...+|.-.+|+++.||.++| +.|.|++..+++++-....+- =-+-|.-+..+...
T Consensus 532 d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~war 591 (1075)
T KOG2171|consen 532 DLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWAR 591 (1075)
T ss_pred hhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHH
Confidence 568999999999999999999 999999999999998774332 23444444444333
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-23 Score=228.43 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
-+++.++.||.||.-+..+-++.+|+.|.+...++.|.+|+++|++||.+|||| .+.||||.++|++++.|.|--+-|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 789999999999999999889999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
|..+||||++++.|+...+-..|++|+++.|+. +.+|.||.+||.|++.+.|.+++..+|||..++..|.++| .-
T Consensus 451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k 528 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK 528 (885)
T ss_pred eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence 999999999999999876654588888887753 7899999999999999999999999999999999999999 45
Q ss_pred hhHHHH--HHHHHHHHHh-cCcCc--CCchHHHHHHHHhhhc---CCc---HHHHHHHHHHHHHHHHHcCcchhhhh---
Q 007424 176 FKAKAA--GLVVVGSVIG-SGAVD--GSGLKGLVSCLLGFLS---SQD---WAARKAAAEALWRLAVVEKDAVPEFK--- 241 (604)
Q Consensus 176 ~kaK~a--lLsaIGSiA~-ag~~f--~pyf~~lm~~L~e~L~---s~D---w~lRkaAaDaLg~LA~~~ge~f~py~--- 241 (604)
|+.|+. ++.|||.+|. +|.+. ..|.+-+||-|++.|. ++| |++ .++|.++|++.|+-|.||+
T Consensus 529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHhccccccCHHH
Confidence 777766 7789999995 76544 3889999999999884 443 884 9999999999999999997
Q ss_pred -hHHHHHHH
Q 007424 242 -GKCLKIFE 249 (604)
Q Consensus 242 -~~~i~~Le 249 (604)
.+|.++++
T Consensus 605 y~Rc~~il~ 613 (885)
T KOG2023|consen 605 YQRCFRILQ 613 (885)
T ss_pred HHHHHHHHH
Confidence 56666666
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2e-10 Score=129.61 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=188.2
Q ss_pred HHHHHHhhhcCChh------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---ccc
Q 007424 7 TSVNGLLNKLSDRD------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLS 77 (604)
Q Consensus 7 ~rvl~~L~KLsDrD------T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~ 77 (604)
=-++..|+|=++.| +++.|-.-|..+|+..--+-+|+.|..|.+.+++++|..|.+++++||-+-+|- -+.
T Consensus 322 P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 322 PVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred HHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh
Confidence 34677777743222 888888888888888777678999999999999999999999999999997777 788
Q ss_pred ccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------------------h-------------------
Q 007424 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------A------------------- 117 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------------------~------------------- 117 (604)
|..+.-+|.|++...||.-.||+++.|++|++++++.+. |
T Consensus 402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998740 0
Q ss_pred ---------hH-HHHHHHHHHHcc-----C-CChhHHHHHHHHHHHHHhhcCCCCh------------------------
Q 007424 118 ---------FV-TMLKLLSDALFT-----E-QDTNAQVGAALCLAATIDAAQDPDA------------------------ 157 (604)
Q Consensus 118 ---------~~-sllkPL~eaL~~-----e-qdk~vQ~~AA~cLaalIE~a~d~i~------------------------ 157 (604)
+. .|+.+++..|++ + ++-+...+|.-||-.+|.+.++..-
T Consensus 482 A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~ 561 (859)
T KOG1241|consen 482 AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILS 561 (859)
T ss_pred hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01 155555555542 1 2345667777777777776544321
Q ss_pred ------------------------------hhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCCchHHHHH
Q 007424 158 ------------------------------GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVS 205 (604)
Q Consensus 158 ------------------------------~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~ 205 (604)
++...||.-|+++|+++ +.-+..-++.+|+.++. .|+.|..|++.+.|
T Consensus 562 ~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~p 641 (859)
T KOG1241|consen 562 LADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKP 641 (859)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 22233555566666663 44455667778887775 67888888888888
Q ss_pred HHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 206 CLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 206 ~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
.|..-|. ..|.++=.+|.-.+|.|+++.++.|.||.+.+..+|=.|
T Consensus 642 yL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 642 YLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8888884 579999999999999999999999999998777766544
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.7e-09 Score=126.78 Aligned_cols=268 Identities=18% Similarity=0.231 Sum_probs=196.4
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+.+|..+|.++-+=.-..-++-=.+.+-.+|+++=|++-|-+|..|.++..++++..|..+++.|..+.+.. -..||+
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~ 157 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL 157 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH
Confidence 356777777776622222344445566678888755599999999999999999999999999999999988 888999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cc----hhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhc
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVG-AS----AFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~----~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a 152 (604)
+.|++...+.+.||++.||-+++.|++.++.++. +. -+..+++-++..|-. ..|..+...+.-||..+.|..
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999994 32 244477778887732 223333344455555555555
Q ss_pred CCCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhc--------------------------------------
Q 007424 153 QDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGS-------------------------------------- 192 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~a-------------------------------------- 192 (604)
+.-+.++|..++.=.++..++. +-.+|-.+|..|-+++..
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 5545677777777666666666 445777777777776642
Q ss_pred -CcCc-------------------C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 193 -GAVD-------------------G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 193 -g~~f-------------------~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
.... + ..++.+++.+..+|.+.+|.-|+||.-+|+.++.-.++.+....+.++...=+.
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 0000 1 345667788888889999999999999999999855555555555555555444
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
=-|==+.||-||.-||..+
T Consensus 398 l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 4599999999988887765
No 5
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=3.4e-10 Score=117.46 Aligned_cols=194 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|+.+|. +.++.+|.+++.+|+.+.. +.+++.+.+.++|+|+.||.+++++||+|...- .....
T Consensus 25 ~~~L~~~L~----d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD----DHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDN 90 (280)
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHH
Confidence 445555543 3344566666666555432 334444455556666666666666666654321 00112
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf 200 (604)
.++.|...+..+.++.|+..|+.+|..+..... .+.+.+.+.+..++.+++..++-+++.++| ..+.
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg---~~~~------ 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALS---VIND------ 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHh---ccCC------
Confidence 344444443455555566666666555432211 123444444555555555555555555444 2221
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+..++.|..+|.++||.+|..|+.+||.+.....+.+. ..+..| .|....||..+..+|..
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~----~L~~~L----~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIRE----AFVAML----QDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHH----HHHHHh----cCCChHHHHHHHHHHHc
Confidence 23455556666666666666666666655111111111 123333 36666666666555544
No 6
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.8e-09 Score=120.26 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=199.6
Q ss_pred cCChhHHHHHHHHHHHHHhhcCCCCh--HHHHHhhhhcCCCCCCchhHH-HHHHHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 16 LSDRDTYSQAAKELDSIAATVDPTLL--PTFLSCILSTNSSDKPGVRKE-CIHVIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 16 LsDrDT~r~A~~eLD~lA~~L~pe~i--p~fL~~L~e~~ss~kp~~RKa-aI~lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
..+-..++-|...+-.+...+.-+.+ ..||.-|.....+-+++.|++ +..++...+..- ...||+..++|.|+.-
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34444555555566666666554443 456777777777778888776 444444443322 8999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
+.|....||+|+.+|+-++...+.......++++++..|+.. ....-.++..-|..+.+.++..+.-+++.++|.+.+.
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev 303 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV 303 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH
Confidence 999999999999999999999985444445999999999644 4445567777788899999888888999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHhc-------------------------------C-cCc-----CCchHHHHHHHHhhhcC
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGS-------------------------------G-AVD-----GSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~a-------------------------------g-~~f-----~pyf~~lm~~L~e~L~s 213 (604)
|.+.+.++|.+.+.++--+-.+ + ..| .|-+.-++|.|..-|.+
T Consensus 304 l~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 304 LWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAE 383 (569)
T ss_pred HccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh
Confidence 9999999998877765432221 1 112 25566667777777777
Q ss_pred CcHHHHHHHHHHHHHHHHHc--CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHH-HHHHhCCCCC
Q 007424 214 QDWAARKAAAEALWRLAVVE--KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI-EAWKQVPDLS 277 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~--ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL-~~wK~i~~~~ 277 (604)
.+...++.++..++-|+.-+ ...+.||..+.++-|+.--.|=++.||..+.+|| -+.|.+.-..
T Consensus 384 Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 384 RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 78888999999999999977 4799999999999999999999999999999999 5555555433
No 7
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.12 E-value=3.6e-09 Score=116.75 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
+...|..-|..+|+.--..-+.+.+..+.+...+++|..|.+++++||-+-+|- -+.|+.+..+|.|.....|+---
T Consensus 344 ~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 344 PSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred hhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceee
Confidence 777888888888886555447889999999999999999999999999997776 77889999999999999998888
Q ss_pred HHHHHHHHHHhhhhhhcc---c------------------h-----------------------hHH----HHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGA---S------------------A-----------------------FVT----MLKLLSDAL 129 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d---~------------------~-----------------------~~s----llkPL~eaL 129 (604)
|...++|++|++|+++.+ + | ..+ |..-++.+|
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 999999999999999874 0 0 011 445555555
Q ss_pred cc-----CCChhHHHHHHHHHHHHHhhcCCCChhhH--------------------------------------------
Q 007424 130 FT-----EQDTNAQVGAALCLAATIDAAQDPDAGKL-------------------------------------------- 160 (604)
Q Consensus 130 ~~-----eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-------------------------------------------- 160 (604)
.+ .++-+...+++.+|..+|+..++.+.+.+
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~ai 583 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAI 583 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 42 45667888899999999988766543222
Q ss_pred ------------HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 161 ------------GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 161 ------------~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
..||.-++++|++. ..-+..-++-+|++++. -|+.|..|.+.++|.|...|...|.++=..|+-.+
T Consensus 584 ir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 584 IRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 22555555666554 33344556778887775 67889999999999999999999999999999999
Q ss_pred HHHHHHcCcchhhhhhHHHHHHHhcc
Q 007424 227 WRLAVVEKDAVPEFKGKCLKIFESKR 252 (604)
Q Consensus 227 g~LA~~~ge~f~py~~~~i~~Le~cR 252 (604)
|.||...|..|.+|.+-....|-.|-
T Consensus 664 gdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 664 GDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999877666665553
No 8
>PRK09687 putative lyase; Provisional
Probab=99.11 E-value=3.3e-09 Score=110.22 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=149.8
Q ss_pred hhcCChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhh
Q 007424 14 NKLSDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRN 90 (604)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Ivrr 90 (604)
..|.|.| .+..|+..|.. +..+. ++.+..++ .++++.+|++++.+||.+...-. ..++.++.+...
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~----~~~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~~L~~l 98 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQL----RGGQDVFRLAIELC----SSKNPIERDIGADILSQLGMAKR---CQDNVFNILNNL 98 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHh----cCcchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCcc---chHHHHHHHHHH
Confidence 3446666 35555555543 34444 56655543 35578999999999999864210 156777778776
Q ss_pred -ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 91 -FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 91 -LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
++|+|+.||.+++.+||.+...... +...++..|..++ .+.++.|+.+|+.+|..+- + +..++-|+.
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~------~~ai~~L~~ 166 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D------EAAIPLLIN 166 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C------HHHHHHHHH
Confidence 8999999999999999999654321 1223566666666 4668889999999995432 1 456778899
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
+|++++..++..++.++|.+ +. .-+.+++.|...|.+.+|.+|+.|+.+||.+... +.+.+. ++.|+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~---~~----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~--~av~~L----i~~L~ 233 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSN---KY----DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK--RVLSVL----IKELK 233 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcC---CC----CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--hHHHHH----HHHHc
Confidence 99999999999999999965 11 1236788888889999999999999999986542 344433 77777
Q ss_pred hccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 250 SKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
. -. ||-.+. .++.+|.+
T Consensus 234 ~----~~--~~~~a~---~ALg~ig~ 250 (280)
T PRK09687 234 K----GT--VGDLII---EAAGELGD 250 (280)
T ss_pred C----Cc--hHHHHH---HHHHhcCC
Confidence 3 22 565444 44555554
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.06 E-value=9.6e-09 Score=121.75 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=78.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh
Q 007424 131 TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF 210 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~ 210 (604)
.+.++.|+..|+.+|..+.... ....+.|.+++++++..+|.+++.++|.+ +.. ..+.+.|...
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~-----~~~~~~l~~a 815 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAEL---GCP-----PDDVAAATAA 815 (897)
T ss_pred cCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc-----chhHHHHHHH
Confidence 4555556655555555543321 11245677888888888998888888743 321 1234567888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 211 LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 211 L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|.++||.+|.+|+++|+.+.. .+.+.+ .+..|+ |+...||.++..||..|
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--~~a~~~----L~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--DVAVPA----LVEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--cchHHH----HHHHhc----CCCHHHHHHHHHHHhcc
Confidence 888999999999999997653 133333 366676 99999999999999887
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.6e-09 Score=115.33 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=173.9
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--- 115 (604)
|-.||.-|..-....+|.+||..-++|-.|-+.+ .+.|||+.|+.+.+++.+|+|-.|---||+=.-++|+.-+=
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~ 292 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEV 292 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHH
Confidence 3445555544456678899999999999999999 89999999999999999999998866666666666665421
Q ss_pred -chhHH-HHHHHHHHH---------cc---C-------------------------------------------CChhHH
Q 007424 116 -SAFVT-MLKLLSDAL---------FT---E-------------------------------------------QDTNAQ 138 (604)
Q Consensus 116 -~~~~s-llkPL~eaL---------~~---e-------------------------------------------qdk~vQ 138 (604)
+|+-. +++-|+..| ++ | .+.+..
T Consensus 293 L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 293 LQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred HHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 11111 333333322 11 0 015677
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHH
Q 007424 139 VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
..+|.+|+-+-.-.++ +.|+.++|-|-+.|.++..++|.+.+=|+|+||..+ ..|.||++.++|.|.++|.+.---
T Consensus 373 kCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkpl 449 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPL 449 (885)
T ss_pred hccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccc
Confidence 7777778776665555 678889999999999999999999999999999765 455699999999999999888888
Q ss_pred HHHHHHHHHHHHHHHc----C-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 218 ARKAAAEALWRLAVVE----K-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~----g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+|+++|.+|+..+.-+ + ++|.|.....++-+ .|+.|.|.||+--|.-++-+=++.
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l----lD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL----LDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999833 2 56777655555555 499999999999999888665543
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.5e-08 Score=111.32 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=195.4
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccccc
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~ 79 (604)
.+..-+..+|++.+|.+ -++.|....+.+...+++..+..||.-+..+....+|..+.+++-++|.++... -++-.
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 45566778899999887 577888889999999999887777766655555559999999999999998877 78889
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCCh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDA 157 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i~ 157 (604)
+|.|+|.+...|.|..+.||.|+-.+|-.+++.+..+.+..+++-|+++| ++.+..+. -|++.+... ......
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l-~dp~~~~~----e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL-ADPSCYTP----ECLDSLGATTFVAEVDA 367 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-cCcccchH----HHHHhhcceeeeeeecc
Confidence 99999999999999999999999999999999986555555999999999 45442222 244444433 233334
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag--~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+-|.-|+|=|-+-|...++..|..++..++=.+. ++ ....||++.++|.|..-+.+.+-++|-.|+-+|+.+-.-.|
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 6788889989999988888888777777776664 53 33459999999999999988899999999999999999887
Q ss_pred -cchhhhhhHHHHHHHhccCcchhHHHHHHHHHH
Q 007424 235 -DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 235 -e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL 267 (604)
+.|..... .++|.-+..|.-.=|.-.++.|
T Consensus 448 ~~~f~d~~p---~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 448 EVSFDDLIP---ELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred hhccccccc---HHHHhhccchhhhhhHHHhhhH
Confidence 56632223 3344444455444444444433
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=3.1e-08 Score=117.46 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|.+-+..|+..|-.++..+++ .+.++.+|. ++++.+|.+++.+|+.+..+- ...+++.|+|+|+.
T Consensus 665 d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L~----~~d~~VR~~A~~aL~~~~~~~---------~~~l~~~L~D~d~~ 729 (897)
T PRK13800 665 AAAVRRAAAEGLRELVEVLPP--APALRDHLG----SPDPVVRAAALDVLRALRAGD---------AALFAAALGDPDHR 729 (897)
T ss_pred CHHHHHHHHHHHHHHHhccCc--hHHHHHHhc----CCCHHHHHHHHHHHHhhccCC---------HHHHHHHhcCCCHH
Confidence 333667777777777665544 234444443 356788888888877653211 01234556666666
Q ss_pred HHHHHHHHHHhhhhh------hccc----------------hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 98 LQATCISTVSSLSPR------VGAS----------------AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~------l~d~----------------~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
||.+++.+|+.+... +.+. .... .+..|...+ .+.++.|+..|+.+|..+...
T Consensus 730 VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~--- 805 (897)
T PRK13800 730 VRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT-GDPDPLVRAAALAALAELGCP--- 805 (897)
T ss_pred HHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCc---
Confidence 666666666654211 0010 0001 244555444 788899999999998877432
Q ss_pred CChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 155 PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+.+.+.+..+|++++..++.+++.++|.+ +. +..++.|...|.+++|.+|+.|+.+|+.+ .+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l---~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~ 867 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGA---AA------DVAVPALVEALTDPHLDVRKAAVLALTRW---PG 867 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhc---cc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CC
Confidence 22334588899999999999988888742 21 24568888899999999999999999996 11
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+ ......|.....|.-+.||..+.+||+.
T Consensus 868 ~------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 868 D------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred C------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 1223334444449999999999999974
No 13
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.95 E-value=1.3e-08 Score=100.66 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=133.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|..++..+.....+.+|..|.+++.-|-.++.++ .+.++|..++..|++.+.|..+.|-..|+.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555544456778999999998888886666 334456677789999999999999999999999999999
Q ss_pred ccc--hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH-HHHHHHHhcCCchhHHHHHHHHHHHH
Q 007424 114 GAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKSEVFKAKAAGLVVVGSV 189 (604)
Q Consensus 114 ~d~--~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L-~~RL~klL~s~~~kaK~alLsaIGSi 189 (604)
... ++.. ++++|+..+ ++.++.+...|..||..+++..+ +.+++ .+-+...+++.+.++|..++.++..+
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 652 2322 777788777 67788899999999999999864 44566 66777889999999999999999988
Q ss_pred Hh-cC---cCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc
Q 007424 190 IG-SG---AVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (604)
Q Consensus 190 A~-ag---~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge 235 (604)
+. .+ ..+. .+++.+++.|..++.+.+-.+|.+|-.++..+....|+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 86 34 2222 34578999999999999999999999999999988774
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=5.3e-07 Score=99.13 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=120.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
.++-++.++..|.....+++|++||.|++++.-+.... -..+.- +++.+.+.|.|+|+.|+.+|+.++..+ ..- +
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~ 183 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-D 183 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-H
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-c
Confidence 44445555555555555556666666666666665544 111111 455566666666666666666666655 110 0
Q ss_pred chhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 116 SAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 116 ~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
.....++.+++..|. +..++-.|.....+|..++... ...- ..+++.+..+|.+.+.. -+++++..+.
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~----~~~~~~~~~i~~l~~~l~s~~~~---V~~e~~~~i~ 256 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME----PEDADKNRIIEPLLNLLQSSSPS---VVYEAIRLII 256 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----hhhhhHHHHHHHHHHHhhccccH---HHHHHHHHHH
Confidence 000023333333332 3445555544444443222111 1112 34555555555533322 2455555555
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 191 GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 191 ~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...... +....+++.|..+|.+.|+.+|-.|+++|..|+....+.+. ...-.+.-+++|.-..||-.+.+.|...
T Consensus 257 ~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 257 KLSPSP-ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp HHSSSH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred Hhhcch-HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 433221 25677899999999999999999999999999887643332 2233455777888899998766665544
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.60 E-value=2.8e-06 Score=96.54 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 21 TYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i-----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
-+++.+...+.+...|+...| ..++.-|+-+++++..... --+..||.++... -+.|||+.|+..|..+|+.
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 367788899999998865432 4444444444444433222 2345677777766 7899999999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccc-hhH--H-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGAS-AFV--T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE 168 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~-~~~--s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~ 168 (604)
+.+.||+-+++.++.|+--+... .+. . +=.-|.+.| ++..+.+-..--.||.+++...+ ...-+=...|+|||.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 99999999999999999887532 221 1 334566777 77788777666666666665532 111233467888999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVP 238 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~ 238 (604)
-.|++.+-|+..-.+..+|.|+--|.++.+.=++ +-=-|.+.|.+-.-..|.+|.+++|.||.++| |.+.
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 9999999999999999999999766555432222 11235666666777889999999999999998 4444
No 16
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=8.2e-07 Score=100.60 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=149.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 52 NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
.++.+|++||-||.++=-+..-| .+.|-+|++ ...|.|||++|..||+.++-.||..-.+ ++ .-|-|+|.-|
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPk-ny-L~LAP~ffkl 226 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQ-NY-LQLAPLFYKL 226 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCc-cc-ccccHHHHHH
Confidence 34779999999998888887777 888888765 7889999999999999998888877421 11 2355666555
Q ss_pred cc--CCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhc----C-cCcCCchH
Q 007424 130 FT--EQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGS----G-AVDGSGLK 201 (604)
Q Consensus 130 ~~--eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~a----g-~~f~pyf~ 201 (604)
+. .+|..... +-++.-++ .++.|.|+ +|+|.|..++++. .|...+..||-.++.+ | ........
T Consensus 227 lttSsNNWmLIK-----iiKLF~aL-tplEPRLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 227 LVTSSNNWVLIK-----LLKLFAAL-TPLEPRLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred HhccCCCeehHH-----HHHHHhhc-cccCchhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 54 34543211 12222222 22335554 4999999999664 5889999999998865 2 12234445
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
-+++-|..|+.++|..+|=.++-+|+.|+..+...++.+++-+++.|. ||-..|| .+||.++-.+.
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIR---lrALdLl~gmV 364 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIR---LRALDLLYGMV 364 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhH---HHHHHHHHHHh
Confidence 678888999999999999999999999999999999999999999999 9999999 55666654443
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.51 E-value=1.3e-05 Score=89.80 Aligned_cols=223 Identities=14% Similarity=0.198 Sum_probs=145.5
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHH
Q 007424 10 NGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (604)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~ 85 (604)
+.+|+. +++|....+.+.|+.+...+++.. ++-+...|.....++++.+|.-+++.++.+++.. ....-+ ..+++
T Consensus 44 f~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 44 FDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 344442 467788888889999999998888 7899999999999999999999999999997655 222222 56899
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH-----HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM-----LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl-----lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
.|+..|.|+|..|..+|..+|..|+.+-. ....+ +.-|...+ ...+..+.....-++..+.. ..+...+++
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~-~S~~~~~~~ 198 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIAS-HSPEAAEAV 198 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 99999999999999999999999998642 22122 23333333 33344444332222222211 122223444
Q ss_pred HH--HHHHHHHHhcCCchhHHHHHHHHHHHHHhc----------------------------------------------
Q 007424 161 GR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGS---------------------------------------------- 192 (604)
Q Consensus 161 ~~--L~~RL~klL~s~~~kaK~alLsaIGSiA~a---------------------------------------------- 192 (604)
.. +++.+++.|++++.-+|-.++..++.+|..
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 44 666666666666666666666666655531
Q ss_pred -C-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-C-cch
Q 007424 193 -G-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE-K-DAV 237 (604)
Q Consensus 193 -g-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~-g-e~f 237 (604)
. ..+...++.++..|.+++.+.|-..|..|+|+||.|+... | +.+
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 0 0000112334445555556789999999999999999833 5 444
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.51 E-value=2.8e-06 Score=93.40 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
..|++.=.|..++. -+++.+....+.|.....++++..|-.|++.++.++. ...++.+++.|.+.|.|+++.||.
T Consensus 58 ~Krl~yl~l~~~~~-~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk 132 (526)
T PF01602_consen 58 LKRLGYLYLSLYLH-EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRK 132 (526)
T ss_dssp HHHHHHHHHHHHTT-TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHH
Confidence 55555544444333 1333356666777666777888888888888888774 335577788888888888888888
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH
Q 007424 101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (604)
Q Consensus 101 Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~ 180 (604)
+|+-++..+.....+.-...+++.|...| .+.++.++.+|+.++..+ ...++.....++.+..+|.+++..++.-.+.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 88888888887753321111455555555 677888888888777777 2211111256777777888887777776666
Q ss_pred HHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhH
Q 007424 181 AGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 181 alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~ 258 (604)
.++..++.++... .... ..+++.+..+|.+.++.++-.|+.++..+.... +.+.......++.|. ++-..
T Consensus 211 ~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~lL~----s~~~n 282 (526)
T PF01602_consen 211 KILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIKLLS----SSDPN 282 (526)
T ss_dssp HHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHT----SSSHH
T ss_pred HHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-HHHHhhHHHHHHHhh----cccch
Confidence 6777666433211 1122 357788888888788888777777766443311 123333344455555 88888
Q ss_pred HHHHHHHHHHHH
Q 007424 259 VREVMNKMIEAW 270 (604)
Q Consensus 259 VRda~~~AL~~w 270 (604)
||-.+.++|..+
T Consensus 283 vr~~~L~~L~~l 294 (526)
T PF01602_consen 283 VRYIALDSLSQL 294 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred hehhHHHHHHHh
Confidence 998877776665
No 19
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=2.1e-05 Score=86.65 Aligned_cols=257 Identities=20% Similarity=0.214 Sum_probs=193.4
Q ss_pred hhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccc--ccHHHHHHHHHhhc
Q 007424 14 NKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS--PYITKIINSITRNF 91 (604)
Q Consensus 14 ~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~--p~L~kIl~~IvrrL 91 (604)
+-|+|.|++++++..|-.....--+-.++-+|.++.....+.++..|-..+--|+.+...-.+- +.|..++-.+-.+.
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka 267 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKA 267 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhc
Confidence 4478899999999988664444444358888999998999999999988877777665544333 67999999999999
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRL 167 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL 167 (604)
+||+..+|.-|+..||.+++.+.+.. -| ..+.-++-.|.++.+..||--|..||..+.|-+. +++..|+-.+--|+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 99999999999999999999964321 11 1666666667667788899999999999999964 55678999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHh-cCcC----c------------------CC------------------------ch
Q 007424 168 ERLLKSEVFKAKAAGLVVVGSVIG-SGAV----D------------------GS------------------------GL 200 (604)
Q Consensus 168 ~klL~s~~~kaK~alLsaIGSiA~-ag~~----f------------------~p------------------------yf 200 (604)
-.++++...+++.+.+.+.|.++. +|+. | .| ||
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~ 427 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLF 427 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999999999999998885 3321 1 02 11
Q ss_pred H----HHHHHHHhhhc-------------------------CCcH-HHHHHHHHHHHHHHHHcCcchhhhh--hHHHHHH
Q 007424 201 K----GLVSCLLGFLS-------------------------SQDW-AARKAAAEALWRLAVVEKDAVPEFK--GKCLKIF 248 (604)
Q Consensus 201 ~----~lm~~L~e~L~-------------------------s~Dw-~lRkaAaDaLg~LA~~~ge~f~py~--~~~i~~L 248 (604)
+ ..++..+.|.. +..| .+|.+|.-....+-..+-+..-+|+ .+....|
T Consensus 428 q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~l 507 (533)
T KOG2032|consen 428 QESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSL 507 (533)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence 1 11222222221 2468 6677776666666665544444444 6778999
Q ss_pred HhccCcchhHHHHHHHHHHHHH
Q 007424 249 ESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 249 e~cRfDKvK~VRda~~~AL~~w 270 (604)
...+||--+.|++++.+|+++.
T Consensus 508 s~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 508 STLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHccCCCchhHHHHHHHhhhH
Confidence 9999999999999999999875
No 20
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.49 E-value=3.6e-06 Score=99.54 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=149.8
Q ss_pred HHHHhhhhcCCCCC-CchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-----
Q 007424 43 TFLSCILSTNSSDK-PGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----- 116 (604)
Q Consensus 43 ~fL~~L~e~~ss~k-p~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----- 116 (604)
.|++.|..++.+-+ +..|.+||.+|..|+..-.-..-|++|+|+++-.+.||+..||.+|+.||.++-....+-
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 34444444433444 367889999998887755444579999999999999999999999999999988877652
Q ss_pred -hhHHHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhc----------------CCCC------------hhhHHHHHHH
Q 007424 117 -AFVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAA----------------QDPD------------AGKLGRMEVR 166 (604)
Q Consensus 117 -~~~sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a----------------~d~i------------~~yL~~L~~R 166 (604)
-|..|+-|-+..|..+ ....+.++=|.||+.+-+.+ .++. .+.|...+.+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence 2556888888888766 44557777777776654432 1111 1223333444
Q ss_pred -HHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhH
Q 007424 167 -LERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGK 243 (604)
Q Consensus 167 -L~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~ 243 (604)
+..+|..+...+|.+|+..|+-+-. -|.+- .-+-+++.|.-||.+.||.+|.+=.|.|.-++..+| ....+|
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey--- 656 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY--- 656 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---
Confidence 4567777788899999999876653 34321 123578999999999999999999999999988777 334433
Q ss_pred HHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 244 CLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 244 ~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
++..|...=-|--..|=..|..+|..
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~ 682 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSI 682 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHH
Confidence 12222222235445554444444443
No 21
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.48 E-value=1e-07 Score=74.69 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhh
Q 007424 57 PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (604)
Q Consensus 57 p~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~L 109 (604)
|.+|++++.+||.+++.+ .+.||++++++.++..|+|+++.||.+|++|||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998877 99999999999999999999999999999999976
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.47 E-value=9.3e-06 Score=102.08 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=171.7
Q ss_pred hcCChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----cccccHH
Q 007424 15 KLSDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYIT 81 (604)
Q Consensus 15 KLsDrDT~r~A~~eLD~lA~~-------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i~p~L~ 81 (604)
...+.|.+.-|+..|..++.+ + ....+|+|+.+|.. ++...++.++.+|+.++.+. .|.. .
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIie--a 487 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITA--A 487 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH--C
Confidence 345678888888888777743 2 33458888888873 45689999999999998655 1111 2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-hhH---HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~~~---sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
-.+|.+++.|+.++..++..|+++|+.|+.+-.+. ... ..++||++.| ...++.+|.-|+.+|..++...+.
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~--- 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADA--- 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccch---
Confidence 46778888999999999999999999999753211 111 2799999998 566888999999999999887543
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCC--chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGS--GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~p--yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..++.++.+|.+++.+.+..++.++|.+...+.. ... -....++.|.+.|.+++-..++.|+.+|+.+...
T Consensus 564 ----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 564 ----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 2336678889999989998899999988764321 111 0135789999999999999999999999999862
Q ss_pred cC---------cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 233 EK---------DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 233 ~g---------e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
-. +.+.| ++..|....|+ ||..+..||..+
T Consensus 640 ~~d~~~avv~agaIpP----LV~LLss~~~~----v~keAA~AL~nL 678 (2102)
T PLN03200 640 RQDLCESLATDEIINP----CIKLLTNNTEA----VATQSARALAAL 678 (2102)
T ss_pred ChHHHHHHHHcCCHHH----HHHHHhcCChH----HHHHHHHHHHHH
Confidence 22 23444 47778766655 566666776554
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.46 E-value=6.8e-06 Score=81.37 Aligned_cols=172 Identities=14% Similarity=0.210 Sum_probs=123.0
Q ss_pred ChhHHHHHHHHHHHHHhhc-CCCChHHHHHh-------hhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATV-DPTLLPTFLSC-------ILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L-~pe~ip~fL~~-------L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~I 87 (604)
|=+.+.-|++.|..++..- +.+..+.|+.+ |.....+..+.+-+.++.+++.++... .+.||++.++|.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3337788999999998876 33334444444 445677777889999999999998877 8999999999999
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--CCCh---hhHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--DPDA---GKLGR 162 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~--d~i~---~yL~~ 162 (604)
++++.|+...||++|..++-.|..++. ....++.+++.....+.++.+...++.+|..+++..+ .... ..++.
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 177 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQ 177 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHH
Confidence 999999999999999999999999972 1123546666665577888899999999999999977 2222 23688
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+.+-+.+++.+++..+|.++-.++..+..
T Consensus 178 l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 178 LVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887764
No 24
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.1e-06 Score=94.18 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=172.1
Q ss_pred hHHHHHhhhhcCCC---CCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCC-----------Ch--hHHHHH
Q 007424 41 LPTFLSCILSTNSS---DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDK-----------NS--ALQATC 102 (604)
Q Consensus 41 ip~fL~~L~e~~ss---~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDp-----------Ds--~VR~Ac 102 (604)
++.++..|.....- .....|-+++.+|+.+...+ .+.|-+.++..+|..+|... +. .++.--
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 55666666544222 34688999999999999888 88888888888888755331 11 266777
Q ss_pred HHHHHhhhhhhcc-chhHH-HHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh-cCCchhH
Q 007424 103 ISTVSSLSPRVGA-SAFVT-MLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKA 178 (604)
Q Consensus 103 ~~aLg~LAe~l~d-~~~~s-llkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL-~s~~~ka 178 (604)
|.+|+.+-+.... .+..+ -+--||--+|+. ..-.++.-|.+|..+++++++.....|.+.+.|=|..-| +...+++
T Consensus 576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 7777777666632 12222 233333333343 233589999999999999999988899999999999999 5568888
Q ss_pred HHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhcc---
Q 007424 179 KAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKR--- 252 (604)
Q Consensus 179 K~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~--Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cR--- 252 (604)
=.++++.+|-++. .+..|.||.+.+|..|.++|+++ +-.++-+-+-+.|-||.+.|..|.+|.+.++..|..-.
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 8999999999996 56788999999999999999986 67888889999999999999999999999998887654
Q ss_pred -----Ccc---hhHHHHHHHHH
Q 007424 253 -----FDK---VKVVREVMNKM 266 (604)
Q Consensus 253 -----fDK---vK~VRda~~~A 266 (604)
||- |-.+|+++.+|
T Consensus 736 ~d~~~~~~~dYvd~LRe~~lea 757 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEA 757 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHH
Confidence 333 44567766665
No 25
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.42 E-value=1.6e-06 Score=77.12 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCC
Q 007424 59 VRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQ 133 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eq 133 (604)
+||.++..|+.++.+- .+.+|+++||+.|++.+.|+|+-||-+||++|..++....+ .+..++..+|++|. .|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 6999999999998877 89999999999999999999999999999999999988732 22226777777774 588
Q ss_pred ChhHHHHHHHHHHHHH
Q 007424 134 DTNAQVGAALCLAATI 149 (604)
Q Consensus 134 dk~vQ~~AA~cLaalI 149 (604)
++.|+.+|.. |++++
T Consensus 81 d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAEL-LDRLL 95 (97)
T ss_pred chhHHHHHHH-HHHHh
Confidence 9999988865 55543
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=2.2e-05 Score=87.47 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=181.7
Q ss_pred hHHHHHHHHHHHHHhhc----CCCChHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhcc
Q 007424 20 DTYSQAAKELDSIAATV----DPTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR 92 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L----~pe~ip~fL~-~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLk 92 (604)
+-++.|+.+|+.+++++ +-++|..+++ ...++..++....||.++..++.++-+- ...+|+.+|++-|+.-+.
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 47899999999999998 2334888888 5588888999999999988777764443 566799999999999999
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCCh-h-hHHHHHHHH
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA-G-KLGRMEVRL 167 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~-~-yL~~L~~RL 167 (604)
|+|..||--||+++-.++.-. ++.+..++.-+|++|- .+.+.+|+.||-+ |++++......-. . .++.++|=|
T Consensus 95 D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHH
Confidence 999999999999999988765 3344457777777763 5778788876655 8888876432221 1 356666655
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHH
Q 007424 168 ERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKC 244 (604)
Q Consensus 168 ~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~ 244 (604)
-+-+.-.+..++..+++-|.-+-.+-. .+..|++.+++.|-.+|+++.-++|..+=-+|+.+-..+. ..+..| .+.
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~-~~~ 251 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY-DDM 251 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc-ccc
Confidence 555555567788899988876555443 3458999999999999999999999988888888666443 233244 445
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
++++=..=---....+.-+..=|+-.=.|++.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 55554333334444555554444444445443
No 27
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.35 E-value=4.4e-05 Score=85.29 Aligned_cols=270 Identities=16% Similarity=0.164 Sum_probs=173.8
Q ss_pred CchHHHHHHHH-HhhhcCChh--HHHHHHHHHHHHHh-hcCCCChHHHHHhhhhcCCC-CCCchhHHHHHHHHHHHhhh-
Q 007424 1 MAHALKTSVNG-LLNKLSDRD--TYSQAAKELDSIAA-TVDPTLLPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH- 74 (604)
Q Consensus 1 m~~eLk~rvl~-~L~KLsDrD--T~r~A~~eLD~lA~-~L~pe~ip~fL~~L~e~~ss-~kp~~RKaaI~lLGvLae~h- 74 (604)
|..|.|+.|.. +|.-|.... -..+|.+.|-.||. .||....|-|+.-+....-. +....+.+++..+|..|+..
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~ 166 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA 166 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC
Confidence 45666766654 455565554 56789999999988 47888889998888665433 34477999999999999877
Q ss_pred --cccccHHHHHHHHHhhcc--CCChhHHHHHHHHHHhhhhhhcc--------------------ch-------------
Q 007424 75 --NLSPYITKIINSITRNFR--DKNSALQATCISTVSSLSPRVGA--------------------SA------------- 117 (604)
Q Consensus 75 --~i~p~L~kIl~~IvrrLk--DpDs~VR~Ac~~aLg~LAe~l~d--------------------~~------------- 117 (604)
.+...-..|+-.|+.+-. .+++.||-|++.+|..-..+... .+
T Consensus 167 Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 167 PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 344445566666665443 36678999998888763333221 00
Q ss_pred -----hHHHHHHHHHHHc----c----CCChhHHHHHHHHHHHHHhhcCCC--Chhh---------------HHHHHHHH
Q 007424 118 -----FVTMLKLLSDALF----T----EQDTNAQVGAALCLAATIDAAQDP--DAGK---------------LGRMEVRL 167 (604)
Q Consensus 118 -----~~sllkPL~eaL~----~----eqdk~vQ~~AA~cLaalIE~a~d~--i~~y---------------L~~L~~RL 167 (604)
.+.|++|.++..+ + .++..+..-|.-=-..++|.--|. ...| ...++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 1114455444321 1 222222111111111222221110 0122 23488889
Q ss_pred HHHhcCC-------chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhh
Q 007424 168 ERLLKSE-------VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPE 239 (604)
Q Consensus 168 ~klL~s~-------~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~p 239 (604)
++||... +.....++-+|+.-.++..+.. .+.+++..+.+-+.+++|.-|-+|+-++|++..-.- +.+.+
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~ 404 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK 404 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence 9998652 2235556677888777754442 133455666666788999999999999999887544 68888
Q ss_pred hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
|-.+.++.+++--.|-+-.|.+.+..++..+-.
T Consensus 405 ~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 405 IVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred hHHhhhHHHHHhcccceeehhhHHHHHHHHHHH
Confidence 989999999999999999999999999887754
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.35 E-value=1.7e-05 Score=99.79 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=166.8
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---ccccc---HHHHHHHHHhh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPY---ITKIINSITRN 90 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~---L~kIl~~Ivrr 90 (604)
+|....+.|+..|-.++.+-+++++++++..+. ++++..+..++.++|.+.... .+... -...++.+++.
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 577789999999999999888888988887653 556788888999998885533 11111 13578899999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHH-HH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGR-ME 164 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~-L~ 164 (604)
|+.++..++.-|++++..++..-.+.. .. ..++||+..| ...+..++..||.||..+..+..+.- ..++.. .+
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 999999999999999999988543321 11 2799999999 45666799999999999987654432 233443 78
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE 239 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p 239 (604)
+.|+++|++++..++..++.+++.++..+.. +.. ...++.|.++|.+..-..|..|+-+|..|..... +.|..
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 8899999999999999999999999975522 221 2457889999998999999999999999998554 44554
Q ss_pred hh
Q 007424 240 FK 241 (604)
Q Consensus 240 y~ 241 (604)
|.
T Consensus 775 ~~ 776 (2102)
T PLN03200 775 SV 776 (2102)
T ss_pred HH
Confidence 54
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=1.2e-05 Score=89.72 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=166.4
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccc
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS 77 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~ 77 (604)
.++.++|..=.+...+--|+-.|-.||.. .+...+|.|+.++. ++...+|..|+-+||.++... .+.
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCChHHH
Confidence 45666666533355666677778888873 24444899999987 456689999999999996544 111
Q ss_pred cc--HHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhcc-chhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 78 PY--ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 78 p~--L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d-~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
.| =..+|+.+...|..++. ...+-+.|+|..|+..--- +++.. +|+-|... +.+.|..|..=||.||.-+.+
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhc
Confidence 11 12345556666666665 4555667999999998732 23322 33333333 367899999999999999999
Q ss_pred hcCCCChhh-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhc-CCcHHHHHHHHHHH
Q 007424 151 AAQDPDAGK-LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLS-SQDWAARKAAAEAL 226 (604)
Q Consensus 151 ~a~d~i~~y-L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~-s~Dw~lRkaAaDaL 226 (604)
+..+.+--. -..++|||.++|.++..++...+|-+||-|+..-....+.+ ...+|+|..+|+ +..-..||.||.+|
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 876655222 23499999999999999999899999998553322222111 236788888888 44555999999999
Q ss_pred HHHHHHcCcchh-----hhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 227 WRLAVVEKDAVP-----EFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 227 g~LA~~~ge~f~-----py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
+-|..--.+.+. ......+.+|++.=|| .|-.|.-||.
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~----~rKEAawaIs 389 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFD----IRKEAAWAIS 389 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchH----HHHHHHHHHH
Confidence 998871111111 1224457888866654 4444444444
No 30
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.29 E-value=6.6e-05 Score=81.98 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCchhHHHHHHHHHHHhhh--ccccc
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~-ss~kp~~RKaaI~lLGvLae~h--~i~p~ 79 (604)
++.++++.....-.|..++..+.+.|=.++.-++.+. +..+|..+.+.. ....+..|..++..+.-+..+- --.|.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~ 268 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL 268 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch
Confidence 4555666666665666666666666666777665554 666666665554 4445566777777775554444 33455
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
-.+++..++..|.| +.+...++++++.|..... +.| .. ...| .|--+.. --+
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~------------~~l-~~--------~~~a---~vklLyk--QR~ 320 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD------------DVL-NK--------ENHA---NVKLLYK--QRF 320 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH------------Hhc-Cc--------cccc---hhhhHHh--HHH
Confidence 66666666666655 4455555555555544421 001 00 0000 0000000 024
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
+..++|+|++.++..+-..|...+.|+..+.. +-.. ..++++.++|.|.+.|..+|..+|.+++++|..+.....+.+
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 56688888888887776688888888888885 4433 349999999999999999999999999999999999888999
Q ss_pred hhhhhHHHHHH
Q 007424 238 PEFKGKCLKIF 248 (604)
Q Consensus 238 ~py~~~~i~~L 248 (604)
.+|....+..|
T Consensus 401 ~~hl~sLI~~L 411 (415)
T PF12460_consen 401 SEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHH
Confidence 99988888766
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=7.8e-05 Score=83.22 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=195.9
Q ss_pred HHHHHHhhhc-CChh-HHHHHHHHHHHHHhhcCCC---C--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccc
Q 007424 7 TSVNGLLNKL-SDRD-TYSQAAKELDSIAATVDPT---L--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS 77 (604)
Q Consensus 7 ~rvl~~L~KL-sDrD-T~r~A~~eLD~lA~~L~pe---~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~ 77 (604)
..+..+|-|| +|.| +-+-|++.||.+.+.+..+ + ++.|++.|.+-....+|..|..-+.-|-+|=..- .+.
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 4456677777 4766 8899999999999998322 2 7999999999988889999999999999984444 666
Q ss_pred ccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH----HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~----sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
.|+|.+++-+.+.|.|+...||..|-.+++.+-..+...|.. ....-|...+ +.+++-+|..|-.=+..+|.-.+
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999998887776543322 1344444444 46678899888777888888888
Q ss_pred CCChhhHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHh-cCcCc---CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 154 DPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVVVGSVIG-SGAVD---GSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 154 d~i~~yL~~L~~RL~klL~s~~~k-aK~alLsaIGSiA~-ag~~f---~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.+.+.|+..++..++.++.+...+ +|.......+.+-. ++..+ .--+..+|..|..+|+++.-++|.++.+=+..
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 888999999999999999877554 55444333333221 11111 12345899999999999999999999999999
Q ss_pred HHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 229 LAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 229 LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+-.-.+ +.+- +.+++-..|=.--.|.=- +.+..+|.+...|...
T Consensus 363 l~~~~p~ql~~-h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 363 LYHKAPGQLLV-HNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS 407 (675)
T ss_pred HHhhCcchhhh-hccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence 888555 6554 444443333322234433 4577888888887744
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.20 E-value=0.00017 Score=80.92 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=148.6
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcC-CCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-PTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~-pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L 80 (604)
+|.+..+..|. ..+..--++.+|..-+..-+ -+. .+.++.|+... +...=..+..+|..+-.......-+
T Consensus 3 ~~~~~~l~~l~---~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l~ 75 (503)
T PF10508_consen 3 EWINELLEELS---SKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSLL 75 (503)
T ss_pred hHHHHHHHHHh---cccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHHH
Confidence 34444444433 33555555666666444433 222 35577777744 2233345556666665544333348
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+.+.+.+.++|..|++.||.-|++++++++.+-... ..+.+++.++..| .+.+..+...|+.+|..+...-
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~---- 150 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHP---- 150 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCc----
Confidence 999999999999999999999999999998764221 1223777788888 6778889999999999998742
Q ss_pred hhhHHHH-----HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 157 AGKLGRM-----EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 157 ~~yL~~L-----~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
+++..| ...|..++..++-.+|--+++++..++........+.. .+++.+...|.++|--+|..|+|+|+.|
T Consensus 151 -~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 151 -EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred -hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 233334 78888888886666666688888877765433333333 3788888899999999999999999999
Q ss_pred HH
Q 007424 230 AV 231 (604)
Q Consensus 230 A~ 231 (604)
|.
T Consensus 230 a~ 231 (503)
T PF10508_consen 230 AE 231 (503)
T ss_pred Hc
Confidence 98
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.16 E-value=1.9e-05 Score=66.33 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=70.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
|+.|+..|.. ++++.+|.+++.+||.+ .-++.++.+++.|+|+++.||.+|+++||.+... .
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~-------~ 62 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDP-------E 62 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH-------H
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-------H
Confidence 4666776643 56789999999999933 2347789999999999999999999999999654 4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLA 146 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLa 146 (604)
.+..|.+.|..+.+..++..|+.+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888866667778888888874
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00065 Score=81.20 Aligned_cols=258 Identities=19% Similarity=0.209 Sum_probs=183.0
Q ss_pred HHHHHHHhhhc-CChh---HHHHHHHHHHH---HHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh--h--
Q 007424 6 KTSVNGLLNKL-SDRD---TYSQAAKELDS---IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--H-- 74 (604)
Q Consensus 6 k~rvl~~L~KL-sDrD---T~r~A~~eLD~---lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--h-- 74 (604)
-..+...+..+ +|-| -....++.||. +|...+.+++..++.......++..+.++|-+.++|+.++.. .
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~ 689 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEG 689 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhh
Confidence 33444444444 3443 23344455554 555667777888887777777777889999999999999777 3
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc--cCCChhHHHHHHHHHHHHH--h
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATI--D 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~--~eqdk~vQ~~AA~cLaalI--E 150 (604)
++..++.-|...+...+++....+|...+.+|-.|-+.+..-..+.+.+.+-|+++ .+.+-.....|+.||.-++ .
T Consensus 690 ~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999887741112235556666665 3445567778888887776 3
Q ss_pred hc----CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHH
Q 007424 151 AA----QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAE 224 (604)
Q Consensus 151 ~a----~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaD 224 (604)
.. .++....+++.+.-|...|-.+....++.-|-+++.+.+- +.. ..+++..++..+..||++..-+.|++|+.
T Consensus 770 ~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~ 849 (1176)
T KOG1248|consen 770 SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG 849 (1176)
T ss_pred hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 32 2222446777777777777666666666658888888753 222 23899999999999999999999999999
Q ss_pred HHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHH
Q 007424 225 ALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVM 263 (604)
Q Consensus 225 aLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~ 263 (604)
.|..+....+ ..+.+|.+.++..+=.-=-|+=-+||-.+
T Consensus 850 fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 850 FIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988777 67777775555555444446444444443
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00014 Score=88.09 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhcC-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHH
Q 007424 25 AAKELDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQAT 101 (604)
Q Consensus 25 A~~eLD~lA~~L~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~A 101 (604)
-.+||=.||..|. |+-+--||+.-- .+--|..||.+.-=||.++.-. .+.||+++++|-+.|-==|||..||+|
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a 1017 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDA 1017 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHH
Confidence 3579999999995 555888887653 3445889999999999998888 999999999999999999999999998
Q ss_pred HHHHHHhhhhhhccc-h--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHhcCCchh
Q 007424 102 CISTVSSLSPRVGAS-A--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 102 c~~aLg~LAe~l~d~-~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
--.--+.|...-... . +..++.-|+..| ++...-|..++|+||.-++++=+ +.+.+.+++|-..+++..++=.--
T Consensus 1018 M~sIW~~Li~D~k~~vd~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1018 MTSIWNALITDSKKVVDEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665442100 0 111455555555 57778899999999999999843 334677888888888888543333
Q ss_pred HHHH---HHHHHHHHHh-cCcC-cCCchHHHHHHHHhhh-----cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHH
Q 007424 178 AKAA---GLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFL-----SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKI 247 (604)
Q Consensus 178 aK~a---lLsaIGSiA~-ag~~-f~pyf~~lm~~L~e~L-----~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~ 247 (604)
+|.| +..+++.+.. ++.. .+--...++..+.+|| .+.--++|+.++-+|..|+...|..+.||....|..
T Consensus 1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPL 1176 (1702)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHH
Confidence 5555 3445554442 2211 1122233444444444 256689999999999999999998888887555444
Q ss_pred H
Q 007424 248 F 248 (604)
Q Consensus 248 L 248 (604)
|
T Consensus 1177 l 1177 (1702)
T KOG0915|consen 1177 L 1177 (1702)
T ss_pred H
Confidence 3
No 36
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.05 E-value=0.00044 Score=72.42 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=129.2
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
..++.-.++.+++.......+..+..++..+. +.++.+|..+...+|.+.. ...++.+.+.|.|.++.
T Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~----~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~ 89 (335)
T COG1413 22 EAAAALQALAELDDLILELAPEAADELLKLLE----DEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPR 89 (335)
T ss_pred hhhHHHHHHhccchhhcccchhhHHHHHHHHc----CCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHH
Confidence 33344344444444444443233555554444 4477889998888776543 45566777889999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch-
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF- 176 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~- 176 (604)
||.+++++||.+.... .+++|+..|..+.+..+...|+.+|..+.+.- -+..++.+++++..
T Consensus 90 vr~~a~~aLg~~~~~~-------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~ 152 (335)
T COG1413 90 VRDAAADALGELGDPE-------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSG 152 (335)
T ss_pred HHHHHHHHHHccCChh-------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhh
Confidence 9999999999987663 68888888855678889999999998776532 13334444443321
Q ss_pred -----------hHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHH
Q 007424 177 -----------KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 177 -----------kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i 245 (604)
.++.+++.+++ ..|. +..++.+++++.+.+..+|.+|+.+|+.+.... ........
T Consensus 153 ~a~~~~~~~~~~~r~~a~~~l~---~~~~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~ 219 (335)
T COG1413 153 SAAAALDAALLDVRAAAAEALG---ELGD------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLV 219 (335)
T ss_pred hhhhhccchHHHHHHHHHHHHH---HcCC------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHH
Confidence 23333333333 2222 234566777777777888888888888766543 11112234
Q ss_pred HHHHhccCcchhHHHHHHHHHHHHH
Q 007424 246 KIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 246 ~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.++ |---.||-++..+|...
T Consensus 220 ~~~~----~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 220 KALS----DESLEVRKAALLALGEI 240 (335)
T ss_pred HHhc----CCCHHHHHHHHHHhccc
Confidence 4444 77788887777766554
No 37
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.04 E-value=0.0011 Score=77.71 Aligned_cols=246 Identities=15% Similarity=0.202 Sum_probs=174.8
Q ss_pred HHHHHHhhcCC--------CChHHHHHhhhhcCCCC--CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 28 ELDSIAATVDP--------TLLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 28 eLD~lA~~L~p--------e~ip~fL~~L~e~~ss~--kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
.|.....++|| ..++.|+..+.+++.-+ ....|=+++-.++.+-.-+ ++-++=..|+.++.-.|.-+-
T Consensus 108 ~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R 187 (1233)
T KOG1824|consen 108 GLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPR 187 (1233)
T ss_pred HHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChH
Confidence 35556666765 33688888887775543 3456777777777664444 666677778888888888888
Q ss_pred hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC---CC-hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE---QD-TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e---qd-k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
..||.=++.++|.++..+.+ .++.-+++.|+.+ .. ...-..-..||++++..++.....++++++|-+....
T Consensus 188 ~aVrKkai~~l~~la~~~~~----~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCNR----DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 89999999999999999743 2444445554322 22 2233455678999999988888888888888888777
Q ss_pred ---cCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC--------------------------------C-
Q 007424 172 ---KSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS--------------------------------Q- 214 (604)
Q Consensus 172 ---~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s--------------------------------~- 214 (604)
+.++-..+...|.+++++.. --.+..||.+.++..+.+|++- +
T Consensus 264 ~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD 343 (1233)
T KOG1824|consen 264 NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDED 343 (1233)
T ss_pred cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccc
Confidence 67788899999999999885 3456679999999999998830 0
Q ss_pred -cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHH-HHHHHhCCCCC
Q 007424 215 -DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKM-IEAWKQVPDLS 277 (604)
Q Consensus 215 -Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~A-L~~wK~i~~~~ 277 (604)
.|-+|.+|+-+|..+-..-.|.+..+-...-.++=.+=-|+-..|+--+.+| ++++|+++..-
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 2999999999999987755566655543333333222226677788666665 57788887654
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=8.2e-05 Score=90.12 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=173.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHH-HHHHHHH--Hhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 41 LPTFLSCILSTNSSDKPGVRKEC-IHVIATL--SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaa-I~lLGvL--ae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+-.|+..|.--..+++|-.|+++ |=+|.++ +.-+ -+.-++++|...-.+.|.|.|--+++.|+.+||.+=+-...+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 56667777666788999999985 4566665 3334 777899999999999999999999999999998653322111
Q ss_pred hhHHHHHHHHHHHc--------------------------------------------------------cC-CChhHHH
Q 007424 117 AFVTMLKLLSDALF--------------------------------------------------------TE-QDTNAQV 139 (604)
Q Consensus 117 ~~~sllkPL~eaL~--------------------------------------------------------~e-qdk~vQ~ 139 (604)
-..+++.-|++.|. .+ .-.+-..
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 11112222222221 11 1234457
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
|||--+.++.+.+.+.+.||+++|+|||++.==+|+.+++.+..+--+.++.-. ....-|++.++.-|..-|++.+|-+
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 899999999999999999999999999999998999999999888888877643 3334899999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-----CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 219 RKAAAEALWRLAVVE-----KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 219 RkaAaDaLg~LA~~~-----ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
|-++|-||.-|-.-. .|.+..|-....+++. |==-.||+|+-.|...+-.|-
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD----DIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD----DIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987732 2455556677777776 555679999999988876643
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.02 E-value=2.3e-05 Score=69.66 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHH-hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchh
Q 007424 179 KAAGLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVK 257 (604)
Q Consensus 179 K~alLsaIGSiA-~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK 257 (604)
|.+.+-++++++ ..+....+|++.+|+.+..+++++||.+|-.|+|+|+.|+.+.++.+-+|...+...|-..=.|--.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 334444555554 4555667999999999999999999999999999999999999877777889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 007424 258 VVREVMNKMIEAWKQ 272 (604)
Q Consensus 258 ~VRda~~~AL~~wK~ 272 (604)
.||.++..--+++|+
T Consensus 83 ~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 83 NVRSAAELLDRLLKD 97 (97)
T ss_pred hHHHHHHHHHHHhcC
Confidence 999998776666663
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=98.02 E-value=0.0011 Score=77.74 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=145.1
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhh
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRN 90 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~Ivrr 90 (604)
...-|.|.++.--|+ .|..|..--.++-++.++..|.....+.+|++||.|++++.-+-... -+.+ -..+++.+.+.
T Consensus 110 l~KDl~d~Np~IRaL-ALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-~~~~~~~L~~L 187 (746)
T PTZ00429 110 FLQDTTNSSPVVRAL-AVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-QQDFKKDLVEL 187 (746)
T ss_pred HHHHcCCCCHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-ccchHHHHHHH
Confidence 333445555332222 24444444455557888888888888899999999999999986544 1111 12455667777
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhcc-----------------------c-----------h-hH----HHHHHHHHHHcc
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGA-----------------------S-----------A-FV----TMLKLLSDALFT 131 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d-----------------------~-----------~-~~----sllkPL~eaL~~ 131 (604)
|.|+|+.|...|+.+|-.+.+...+ + | .. .++.-+...| .
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q 266 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRM-S 266 (746)
T ss_pred hcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-c
Confidence 9999999999998888888654210 0 0 00 0111122222 2
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcC------------
Q 007424 132 EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDG------------ 197 (604)
Q Consensus 132 eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~------------ 197 (604)
+.++.|..+|+-++-.+....+... ..++.+|..-++.|+ +.+..+|-.++..|-.+++.- ..|.
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~D 345 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSD 345 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCC
Confidence 4556666666666554443221111 112222223333333 333445555555555444321 1111
Q ss_pred ------------------CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHH
Q 007424 198 ------------------SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVV 259 (604)
Q Consensus 198 ------------------pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~V 259 (604)
--+..++.-|.+|+++.|-+.|..|+.+||.+|.-.. ..+.+|++.|-..=-+++..|
T Consensus 346 p~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~----~~a~~cV~~Ll~ll~~~~~~v 421 (746)
T PTZ00429 346 PPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD----SVAPDCANLLLQIVDRRPELL 421 (746)
T ss_pred cHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCchhH
Confidence 1134567778888888899999999999999997543 345666666654433566566
Q ss_pred HHHHHHHHHHHHhCCC
Q 007424 260 REVMNKMIEAWKQVPD 275 (604)
Q Consensus 260 Rda~~~AL~~wK~i~~ 275 (604)
-+++...-.+.+..|.
T Consensus 422 ~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHCcc
Confidence 5655444444454443
No 41
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.98 E-value=0.00024 Score=83.64 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=157.3
Q ss_pred CCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhh
Q 007424 37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (604)
Q Consensus 37 ~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~ 112 (604)
++.. ++-+-..+.....+.+|..|++++.-+--..+.. ....+..-+...+--+++|.+..|-.-++..|..||.-
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 4444 4555556666677899999999998887776665 66778888888888999999999999999999999988
Q ss_pred hccc--hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007424 113 VGAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (604)
Q Consensus 113 l~d~--~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSi 189 (604)
+... ++.. .++.|++.+ .+..+.+...+--|++++++. --|..+++-++.++++.+.++|.-+...+.-.
T Consensus 326 lr~~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred cchhhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 8542 3333 788888888 677888999999999999983 24788999999999999999998877766655
Q ss_pred Hh-cCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 190 IG-SGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 190 A~-ag~~--f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
.. -+.. +..-...++|.+.....+.+-++|++|.++++.|..++| +.|.-|
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 54 3322 335566788888888889999999999999999999999 566655
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0016 Score=68.21 Aligned_cols=190 Identities=21% Similarity=0.285 Sum_probs=107.0
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCC------------hhHHHHHHH
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN------------SALQATCIS 104 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpD------------s~VR~Ac~~ 104 (604)
++..+++++.++.. +++..+|..+.++||.+.....+.| ++.-++|.. ..||.++..
T Consensus 103 ~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~~~--------l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 DPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERALDP--------LLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred ChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhhHH--------HHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 44446666666654 4455677777777776655442222 222223322 246666666
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHH
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV 184 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLs 184 (604)
+++.+.+.- ...+|.+.+ .+.+..++..|+.+|..+.... ..+.+.+.+++.+++..++...+.
T Consensus 172 ~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 172 ALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred HHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 666665552 455566665 4555567777777776666543 455567777777777777666555
Q ss_pred HHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHH
Q 007424 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMN 264 (604)
Q Consensus 185 aIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~ 264 (604)
++| ..|. ...+..+..++.+++|.+|..+...++ +..........+..+ +|-...||-.+.
T Consensus 236 ~l~---~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~----~~~~~~~~~~~~ 296 (335)
T COG1413 236 ALG---EIGD------EEAVDALAKALEDEDVILALLAAAALG------ALDLAEAALPLLLLL----IDEANAVRLEAA 296 (335)
T ss_pred Hhc---ccCc------chhHHHHHHHHhccchHHHHHHHHHhc------ccCchhhHHHHHHHh----hcchhhHHHHHH
Confidence 555 2221 244566666666677777666666665 111111112223333 366777777777
Q ss_pred HHHHHHHh
Q 007424 265 KMIEAWKQ 272 (604)
Q Consensus 265 ~AL~~wK~ 272 (604)
.+++..++
T Consensus 297 ~~l~~~~~ 304 (335)
T COG1413 297 LALGQIGQ 304 (335)
T ss_pred HHHHhhcc
Confidence 77766654
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00035 Score=78.15 Aligned_cols=250 Identities=12% Similarity=0.159 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhhc-CCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccc-cHHHHHHHHHhhccC
Q 007424 21 TYSQAAKELDSIAATV-DPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSP-YITKIINSITRNFRD 93 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p-~L~kIl~~IvrrLkD 93 (604)
..|.++=.|-.|-++- |+.. +.++|+.|.--..+.++.+...+.-++..|+.+- .+.- ---.++|.++..|.-
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 5677777777777776 3222 5666666666666777788888888888887655 1111 123566777778888
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLE 168 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~ 168 (604)
++..|+-.|+.++|.++..-..+.... +|+-|...|......++..-||..+-.++.+....+-.++. -|+|-|+
T Consensus 291 ~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li 370 (514)
T KOG0166|consen 291 SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI 370 (514)
T ss_pred CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH
Confidence 888888888888888776654332222 44444444432445556777999998888765544433332 3899999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCc-CCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch---hhhh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV---PEFK 241 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f---~py~ 241 (604)
.+|.+..|+.|.-+.=||+-+...|..- ..|+-. +|+.+.+.|+-.|-.+=..+.|+|+.|-.+.. +.- .+|.
T Consensus 371 ~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~ 450 (514)
T KOG0166|consen 371 NLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLA 450 (514)
T ss_pred HHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 9999999999988888888655444311 255533 68888889988888888899999999877543 111 3343
Q ss_pred -----hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 -----GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 -----~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...+..+|.+++-.--.+.+.+..-|+.+
T Consensus 451 ~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 451 IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 33466777778777777888877777776
No 44
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0011 Score=78.17 Aligned_cols=224 Identities=16% Similarity=0.190 Sum_probs=149.9
Q ss_pred HHHHHH-HHHHHhhcCCCChHHHHHhhhhcCC--------CCCCchhHHHHHHHHHHHhhh-c---ccccHHHHH-HHHH
Q 007424 23 SQAAKE-LDSIAATVDPTLLPTFLSCILSTNS--------SDKPGVRKECIHVIATLSNSH-N---LSPYITKII-NSIT 88 (604)
Q Consensus 23 r~A~~e-LD~lA~~L~pe~ip~fL~~L~e~~s--------s~kp~~RKaaI~lLGvLae~h-~---i~p~L~kIl-~~Iv 88 (604)
..|+.. |-.++.-=-.+.||.+|+.+.+-.. ..++..+..|++.+|.||+.- . ...+|+.|+ ++|.
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 334433 3444443345567777776655433 345667778999999999766 3 334577665 4777
Q ss_pred hhccCCChhHHHHHHHHHHhhh-hhhccch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC---CChhhHHHH
Q 007424 89 RNFRDKNSALQATCISTVSSLS-PRVGASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD---PDAGKLGRM 163 (604)
Q Consensus 89 rrLkDpDs~VR~Ac~~aLg~LA-e~l~d~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d---~i~~yL~~L 163 (604)
=-+++|-..+|.=||+.+++++ ....++. +...+......|.++++-.|+.-||.||..+|.+... .+.+.++.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 8889999999999999999999 4444433 3336777777776677888999999999999998653 356889999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhh----c------CCcHHHHHHHHHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFL----S------SQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L----~------s~Dw~lRkaAaDaLg~LA~~ 232 (604)
|+.|+++.+.-... .+..++-.++. -+.+..||...+++.|.+.. . +.+-..--+|.-+|.+|-++
T Consensus 549 mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 549 MQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred HHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 99999998654332 34456666664 45666799999888886643 1 12344445666666666652
Q ss_pred c------CcchhhhhhHHHHHHH
Q 007424 233 E------KDAVPEFKGKCLKIFE 249 (604)
Q Consensus 233 ~------ge~f~py~~~~i~~Le 249 (604)
+ ++.+......|+.++.
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~ 648 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIG 648 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
Confidence 2 2445544455555443
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.82 E-value=8.7e-05 Score=64.49 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=81.0
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.++.++.++.+. ++..|+.++.+|+.++... .....+. .+++.+++.|.|+++.|+..|+++|+.|+......
T Consensus 8 ~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 478888888654 3799999999999998763 2233344 78889999999999999999999999999875321
Q ss_pred h--hHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 117 A--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 117 ~--~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
. +.. +++-|+..| .+.+..++..|+.+|..+++
T Consensus 84 ~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 1 111 677777777 55577899999999988764
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.80 E-value=0.00061 Score=66.14 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=91.9
Q ss_pred CCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCCh
Q 007424 56 KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDT 135 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk 135 (604)
+|.+|-.++.++|-||--| ...+++.++.+.+.|+|+++.||..|+..|..|...-.-.....++.-++..| .|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~--~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY--PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC--cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCCCH
Confidence 4678999999999998888 33345556678899999999999999999999865421111112445555555 68899
Q ss_pred hHHHHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC
Q 007424 136 NAQVGAALCLAATIDAA-QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a-~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s 213 (604)
.++..|..++..+.... +..+...+++++-.|-....++.+ +.....-+..++..|.+++..
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~----------------~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY----------------GPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc----------------cccCHHHHHHHHHHHHHHcCc
Confidence 99999999999888873 333344555555544444433332 111113345667777777763
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=97.79 E-value=0.0034 Score=73.80 Aligned_cols=147 Identities=16% Similarity=0.075 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
++.++..|.+.|.|+++.||.+|+.++..+-..-.+- +...++.-|.+ |+.|.++.|+..|..+|..+.+..++. ..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~ 215 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVNDYGSEK-IE 215 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHHHhCchh-hH
Confidence 3444445555555555555555555555553322110 00113333333 224555555555555555554433221 12
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.....+.+|+..|..-+--.+-.++.++.. -..........++..+.++|.+.+-.+--+|+-++..++.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 233333444444432222222333333321 1000012233566666666666666666666666555543
No 48
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.79 E-value=0.0002 Score=60.12 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=68.5
Q ss_pred HHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 84 INSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 84 l~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|+.+++.| +|+++.||..+++++|.+... ..++.|+..| .+.++.++..|+.+|..+.. ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~----------~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-------EAIPALIELL-KDEDPMVRRAAARALGRIGD----------PE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-------HHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HH
Confidence 57788888 999999999999999977544 4678888877 78899999999999987742 56
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHHH
Q 007424 163 MEVRLERLLKSE-VFKAKAAGLVVVG 187 (604)
Q Consensus 163 L~~RL~klL~s~-~~kaK~alLsaIG 187 (604)
.++.|.+++.++ +..++.+++.++|
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777888888775 5566888777765
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.78 E-value=0.005 Score=71.05 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=162.4
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHh
Q 007424 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSS 108 (604)
Q Consensus 31 ~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~ 108 (604)
..|.+|--+.+.+||..++.+.. -|..|.-||++.-.+|..- .+-|||..++.+|-.+|.|-..-||-.++.+++.
T Consensus 502 vvasalgip~llpfLkavc~Skk--SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 502 VVASALGIPALLPFLKAVCGSKK--SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHHHHhCcHHHHHHHHHHhcccc--chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence 45666655567888888886543 3689999999999987765 8889999999999999999999999999999999
Q ss_pred hhhhhcc---chhHHHHHHHHHHHccCCChhHH----------------HHHHHH---HHHHHhhc--CC----------
Q 007424 109 LSPRVGA---SAFVTMLKLLSDALFTEQDTNAQ----------------VGAALC---LAATIDAA--QD---------- 154 (604)
Q Consensus 109 LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ----------------~~AA~c---LaalIE~a--~d---------- 154 (604)
|++...- ..|.++|+||-+.+-.+-.+... .+..+. |-.++... +|
T Consensus 580 laeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKV 659 (1172)
T KOG0213|consen 580 LAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKV 659 (1172)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence 9998742 23666888888776322222100 001111 11111111 11
Q ss_pred --------CC-hhhHHH-HHHHHHHHh---------------------------------------cCCchhHHHHHHHH
Q 007424 155 --------PD-AGKLGR-MEVRLERLL---------------------------------------KSEVFKAKAAGLVV 185 (604)
Q Consensus 155 --------~i-~~yL~~-L~~RL~klL---------------------------------------~s~~~kaK~alLsa 185 (604)
.+ ..|+.. ++|.+++.+ ++.+-+-+.+..++
T Consensus 660 v~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~et 739 (1172)
T KOG0213|consen 660 VKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAET 739 (1172)
T ss_pred HHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHH
Confidence 01 122211 333333222 22222112222221
Q ss_pred HHHHHh-------------------------------------------cCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 186 VGSVIG-------------------------------------------SGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 186 IGSiA~-------------------------------------------ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
+.-++. -|+...||+++++..+.-.|.+..-.+|..|
T Consensus 740 v~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqa 819 (1172)
T KOG0213|consen 740 VSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQA 819 (1172)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHH
Confidence 111111 0222248988888888888899999999999
Q ss_pred HHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCCCCC
Q 007424 223 AEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEAS 281 (604)
Q Consensus 223 aDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~ 281 (604)
+|.++.||.+.+ ..+. ....|-.+|.+.-=.-.+.|-.++.-||.++-.+-|+.--++
T Consensus 820 adlis~la~Vlktc~ee~-~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 820 ADLISSLAKVLKTCGEEK-LMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHHHHHhccHHH-HHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 999999999876 3444 337778888877778889999999999999988887754443
No 50
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.76 E-value=0.0012 Score=77.61 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHhhcCC---CC----hHHHHHhhhhcCCCCCCchhHHHHH-HHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 21 TYSQAAKELDSIAATVDP---TL----LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---e~----ip~fL~~L~e~~ss~kp~~RKaaI~-lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
|....+..|-.++..+|. +. +|-+..-+.|..+ -...++.++- +++.|+... -+.||++.+.|.+.-.
T Consensus 451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs--ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~a 528 (1233)
T KOG1824|consen 451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS--SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAA 528 (1233)
T ss_pred chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc--hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHH
Confidence 788888889889988862 22 3444444444433 2356777764 444443322 8899999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhcc--ch--h--HHHHHHHHHHHc-----cCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGA--SA--F--VTMLKLLSDALF-----TEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d--~~--~--~sllkPL~eaL~-----~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
..||-..|-.-|+.+..++...+-. +| + ..++++++...+ .+.|..|...|..|+.-+|-+.+|.....
T Consensus 529 V~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e 608 (1233)
T KOG1824|consen 529 VGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE 608 (1233)
T ss_pred hcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999998899999999988854 21 2 227888877664 46788899999999988888888777666
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f--~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
|+..++-|++-|.+.- .+-+++-|+.-||.++-.+ .|.+..+++.|.+|+....-.+|-+...++-.|....++.+
T Consensus 609 L~~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 609 LPRTLPILLERLGNEI--TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred hHHHHHHHHHHHhchh--HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777777775553 3445566777677666555 38999999999999999999999999999999999989888
Q ss_pred hhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 238 PEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 238 ~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
..+. +.++.-|-..=.+--++|-.-+..-|-.+-.++
T Consensus 687 ~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 687 PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 8775 444555554445666777666555555554433
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.74 E-value=0.00057 Score=75.13 Aligned_cols=151 Identities=17% Similarity=0.036 Sum_probs=90.2
Q ss_pred HHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 82 KIINSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 82 kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
..++.++..| .|+++.|+.+|+.++....... .+..|+++| .+.+..+..+++.+|..+- .
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~-------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~----------~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQEDAL-------DLRSVLAVL-QAGPEGLCAGIQAALGWLG----------G 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCChH-------HHHHHHHHh-cCCCHHHHHHHHHHHhcCC----------c
Confidence 4455666667 4666777777666665443221 366777777 4556667777777665322 2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+...+.|.++|++++..++.+++.++|- -+.. ..+.|...|.++|-.+|..|+.+||.|... +....
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~~-------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~- 182 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGA---HRHD-------PGPALEAALTHEDALVRAAALRALGELPRR--LSEST- 182 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHh---hccC-------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH-
Confidence 4455667777777777777666655552 1111 123455556677777777777777776542 22221
Q ss_pred hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 241 KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 241 ~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|...+.|..+.||.+++.++...
T Consensus 183 -------L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 183 -------LRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -------HHHHHcCCCHHHHHHHHHHHHHc
Confidence 22335577777777777777554
No 52
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.73 E-value=0.0033 Score=69.20 Aligned_cols=118 Identities=23% Similarity=0.126 Sum_probs=56.1
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L 163 (604)
+..+++.|.|++..||.+++++||.+-.. .....|...| .+.++.++.++..++..... + -
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-------~a~~~L~~~L-~~~~p~vR~aal~al~~r~~---~--------~ 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-------QAEPWLEPLL-AASEPPGRAIGLAALGAHRH---D--------P 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-------HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc---C--------h
Confidence 45555566666666666666666654333 1333444444 44455555444433332111 0 0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.+.+.++|+++++.++..++.++|.+-.. ..++.|...+.+.|-.+|.+|+.+|+.+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12344445555555555555555532211 1233344445555555555555555444
No 53
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0021 Score=73.22 Aligned_cols=217 Identities=17% Similarity=0.186 Sum_probs=148.6
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGA----- 115 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----- 115 (604)
.....+|..+..+.++.+|++|+..|=.|.+|. .|++ +....++.++|.+..||.||+..+--++...+-
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 345566777788889999999999998998876 2333 456788999999999999998888777766631
Q ss_pred ch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHH---------HHh----------
Q 007424 116 SA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLE---------RLL---------- 171 (604)
Q Consensus 116 ~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~---------klL---------- 171 (604)
+. ....+.-+..++ .+-+-.|..-||-+|..+-....+.+.+.|.+ +|-++- +.|
T Consensus 273 ~~e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 11 112566667777 44444455556666655544333323333333 444221 111
Q ss_pred -------------------------------cCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 172 -------------------------------KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 172 -------------------------------~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+..=+.++.|++..++++|..... +....+..|.+.+.++.-.+|-
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccHHHHHHH
Confidence 122234788888888888764332 3356788899999999999999
Q ss_pred HHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 221 AAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 221 aAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
-|+-+|-.|+.. +..=..+...++++|+ |....||+++.+.|...+
T Consensus 429 ~ai~aL~~Is~~-l~i~eeql~~il~~L~----D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 429 KAIFALTMISVH-LAIREEQLRQILESLE----DRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHH-heecHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Confidence 999999999986 3333346677899999 999999999998887653
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.62 E-value=0.00022 Score=61.92 Aligned_cols=109 Identities=28% Similarity=0.184 Sum_probs=82.4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC-
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS- 198 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p- 198 (604)
++++|++.| .+.++.+...|+.||..+....++....++. .+++.|.++|++++..++..++.+++.++..+.....
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 567777777 4556778888888888888764333333444 5888999999999999999999999998865432211
Q ss_pred ch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 199 GL-KGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 199 yf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
+. ..+++.|.++|.+.+..+|..|+.+|..|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11 236888999999899999999999999875
No 55
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.59 E-value=0.00069 Score=66.87 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=83.1
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhcc------------chhHH-----------HHHHHHHHHccCCChhHHHHHHHHHH
Q 007424 90 NFRDKNSALQATCISTVSSLSPRVGA------------SAFVT-----------MLKLLSDALFTEQDTNAQVGAALCLA 146 (604)
Q Consensus 90 rLkDpDs~VR~Ac~~aLg~LAe~l~d------------~~~~s-----------llkPL~eaL~~eqdk~vQ~~AA~cLa 146 (604)
.++||++.||.|++.++..|=+.... ..|.+ +=.-|+.+|..|++..+.....-||+
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 37899999999999999998766431 11221 33444555556778888888999999
Q ss_pred HHHhhcCCCC--hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc
Q 007424 147 ATIDAAQDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194 (604)
Q Consensus 147 alIE~a~d~i--~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~ 194 (604)
.+|++.++.- .+++.+++..+..++.+.+..++.+.+.++|.++.+..
T Consensus 128 ~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 128 VLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 9999988753 47899999999999999999999999999999887643
No 56
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.57 E-value=0.01 Score=63.05 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHH-HHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh---
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDS-IAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--- 73 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~-lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--- 73 (604)
.+-.++.++++.|.|+- |+..|++.|-. |..+.-++. ...|+.++.-.....++..+..|.++++++|--
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 44556778888887655 66777777755 334444333 355666666666555555666677888888544
Q ss_pred -hcccccHHHHHHHHHhhccCCCh--hHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc----c--CC---------C
Q 007424 74 -HNLSPYITKIINSITRNFRDKNS--ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF----T--EQ---------D 134 (604)
Q Consensus 74 -h~i~p~L~kIl~~IvrrLkDpDs--~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~----~--eq---------d 134 (604)
......+..+.|++.+.+.|... .+|.+|+.+||.++-.....+... -+-..++.+| . +. +
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 23345567788888888999764 479999999999988765432111 2223444332 1 11 2
Q ss_pred hhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc----CcC-CchHHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA----VDG-SGLKGLVSCLL 208 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~----~f~-pyf~~lm~~L~ 208 (604)
+.+..+|..|-.-++-.+++. +..++...+|+|..+|++++..++-++=.+|+-+...+. .|. +..+.++..|.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 345555555555555444432 346678899999999999999999999999988876442 332 44444555554
Q ss_pred hhh
Q 007424 209 GFL 211 (604)
Q Consensus 209 e~L 211 (604)
+.-
T Consensus 280 ~La 282 (309)
T PF05004_consen 280 ELA 282 (309)
T ss_pred HHH
Confidence 433
No 57
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0011 Score=71.37 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=147.2
Q ss_pred hhhcCChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHH
Q 007424 13 LNKLSDRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYIT 81 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~ 81 (604)
|+|--|.-.++.|+..|-.|... | ..-.+|.+.+.+. +.++.+|..|-.+++.++-.. .++.-=|
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 44444666889999999888765 3 3334788877776 456788999988888874433 7777789
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc---c------------------c----------------h-----h-
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVG---A------------------S----------------A-----F- 118 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~---d------------------~----------------~-----~- 118 (604)
|++|.++....|+++.|.--|..||+.|+.... + . | +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 999999999999999999888999999986542 0 0 0 1
Q ss_pred -HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 119 -VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 119 -~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..|++||...|--..+..+|..|..-|-.+--........+... -+|++.+++-..+..++.-+-.||.-++-.. .+
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~ 409 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-ND 409 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-cc
Confidence 12889999888433344577777666643332211111111111 4567777777776777766666666555332 22
Q ss_pred CCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 197 GSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 197 ~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..||- .++|.|++.+.++.-++|..|+.+|+-+..-
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 22332 3688999999999999999999999988763
No 58
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=0.0033 Score=73.76 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=169.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
+++++..+........+.+|-..+.-+..+-..- -+..+-+..+|.|...-.|...-||.|..+.+.+++..+...-
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~ 514 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF 514 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH
Confidence 6666666655555666778877774333321111 4566778888899999988888899999999999998874211
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~ 197 (604)
+...+.+|+..-+.+..-.++.+|+.+|.++++..+ ..-+-..+.++++....++++..+-+.+.+|-.+|.+.+. .
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-e 591 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-E 591 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-H
Confidence 222344444443334445689999999999999987 2235688999999999999999999999999999976542 1
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhC
Q 007424 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i 273 (604)
-+-+.++|.+.+...+..-.+|.-+|..|..+...+.. .-..+.++.+++...-|--..||=.+..|+++....
T Consensus 592 i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 592 ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 23456788888888888999999999999998876542 223466778888888899999999999999988653
No 59
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.52 E-value=0.0016 Score=73.68 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=153.4
Q ss_pred HhhhcCChh--HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCchhHHHHHHHHHH--HhhhcccccHHH
Q 007424 12 LLNKLSDRD--TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITK 82 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~-----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~k 82 (604)
+|+-++|.- -+++++...+.+...|+--. ...++..|+-++++++... +-.+.+||.+ +-+....|||+.
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHH
Confidence 444444443 23455666666666654222 2444444444444433221 1233556654 223378899999
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--H-HHHHHHHHHccCCChhHH---HHHHHHHHHHHhhcCCC
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--T-MLKLLSDALFTEQDTNAQ---VGAALCLAATIDAAQDP 155 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--s-llkPL~eaL~~eqdk~vQ---~~AA~cLaalIE~a~d~ 155 (604)
|++.|.++|+.+-+.||.-+++.+|.|+--+.... +. . +=.-|.+.| ++..+.+- .+|..|+-.+...-.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~-- 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL-GEDYPEVLGSILKAICSIYSVHRFRS-- 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc--
Confidence 99999999999999999999999999998875322 11 1 333456666 66666655 355555555554321
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
.-|-...|+|+|.-.|++.+-|+..-.+..+|.|+--+....+.=++ +-=-|.+.|.+-+-+.|.+|.+++|.|+.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11223567777888899999999888888999887543322111111 1223566677777889999999999999999
Q ss_pred C--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 234 K--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 234 g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
| |.+.-. ++=|+ =.-.+-|--..-||...-+..+.
T Consensus 762 GPqdvL~~L----lnnLk----vqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 762 GPQDVLDIL----LNNLK----VQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred CHHHHHHHH----Hhcch----HHHHHhhhhhhhhhhhhHhhcCc
Confidence 8 333322 22222 11133444455566666555544
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.00058 Score=72.89 Aligned_cols=206 Identities=17% Similarity=0.272 Sum_probs=133.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh---hh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN---SH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae---~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~L 109 (604)
+...+|.|++.|+++. -.+|..++-+||.+|. +| .-.--|+.++..+.. .-++.+.-+-+-|+|..|
T Consensus 155 d~~AVPlfiqlL~s~~----~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s--s~~~ismlRn~TWtLSNl 228 (526)
T COG5064 155 DAGAVPLFIQLLSSTE----DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS--SAIHISMLRNATWTLSNL 228 (526)
T ss_pred eCCchHHHHHHHcCch----HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh--ccchHHHHHHhHHHHHHh
Confidence 5666899999998543 3799999999999943 33 333346666666552 123334333456888888
Q ss_pred hhhhccch---hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCCchhHHHHHHH
Q 007424 110 SPRVGASA---FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLV 184 (604)
Q Consensus 110 Ae~l~d~~---~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~~~kaK~alLs 184 (604)
++----+| -.+ .++-|+..+ -.-|+.+-.-||.|+.-+.++..+.+-..+.- +++||+++|.|++.++..-+|.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 76532122 122 444444444 55688888999999999888866555444544 7789999999999999888888
Q ss_pred HHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH---------HcCcchhhhhhHHHHHHHhccC
Q 007424 185 VVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV---------VEKDAVPEFKGKCLKIFESKRF 253 (604)
Q Consensus 185 aIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~---------~~ge~f~py~~~~i~~Le~cRf 253 (604)
.||-|+.....-.+.. -..++.+...|++.--.+||.||.+|+-|-. +.-+.++|+ +.+|+..-|
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL----i~lls~ae~ 383 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL----IHLLSSAEY 383 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH----HHHHHHHHH
Confidence 8887653221111100 1234555566777666999999999988753 222556665 666665444
No 61
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.44 E-value=0.007 Score=66.95 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=139.2
Q ss_pred HHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHH-HHHHHHhhh--cccccHHHHHHHHHhhccC-CChhHHHHHHH
Q 007424 32 IAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCIS 104 (604)
Q Consensus 32 lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~-lLGvLae~h--~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~ 104 (604)
...++.|+. .+...+.|.+...+.+...||+|+. +++++|++- .--.|..+||-.++.-|.| -+...+.-|+.
T Consensus 273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr 352 (516)
T KOG2956|consen 273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR 352 (516)
T ss_pred chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 344454544 4556666666666778899999997 899999987 4456899999999999999 77788999999
Q ss_pred HHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH
Q 007424 105 TVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (604)
Q Consensus 105 aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~ 180 (604)
.|+-+...=.. ..+.++++-|-.+- +..+.+-..|+-|+-.++-... +...+--++|.|+. .+.+.-.
T Consensus 353 vL~~ml~~Q~~~l~DstE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt----~D~~~~~ 424 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT----ADEPRAV 424 (516)
T ss_pred HHHHHHHhchHhhhchHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc----CcchHHH
Confidence 88888776321 12333566555554 3344455555555444444321 12334445555444 4444444
Q ss_pred HHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 181 AGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 181 alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
++|-.+.-+++ .- +...+.++.++|++.+...+....+||.|.=+|-+|...+| +.+.||
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 55555555553 32 22347788899999999999999999999999999999999 999999
No 62
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.39 E-value=0.0032 Score=69.51 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=133.4
Q ss_pred HHHHHhhhcCCh---hHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC-CCCchhHHHHHHHHHHHhhh--ccc
Q 007424 8 SVNGLLNKLSDR---DTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH--NLS 77 (604)
Q Consensus 8 rvl~~L~KLsDr---DT~r~A~~eLD~lA~~L~p---e~-ip~fL~~L~e~~ss-~kp~~RKaaI~lLGvLae~h--~i~ 77 (604)
-|.+.|.++++. |.++.|+.+|-.|...=.- ++ |-.+|..+.|.... .+..-|+.|++.|+-+++.- .+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 355667777654 5889999998777652110 33 67777777777655 56788999999999998866 555
Q ss_pred ccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-
Q 007424 78 PYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP- 155 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~- 155 (604)
.+-.--+.-++..-+|++. ++|.|.-+++..++.++....+. .+.|++- +..+| .-..+.-++.+++|.+..+
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Il---t~D~~-~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLIL---TADEP-RAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHh---cCcch-HHHHHHHHHHHHHhhcCHHH
Confidence 5655555566666678776 57888888888888887432222 3333332 33343 2223333889999997643
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hcC-cCcCCchHHHH
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSG-AVDGSGLKGLV 204 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA-~ag-~~f~pyf~~lm 204 (604)
+...++.++|.+++..++.+.-+|.+++=|+=++. .+| +++.|||..+-
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 45789999999999999998888877766666665 588 77789998763
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.38 E-value=0.00021 Score=50.36 Aligned_cols=31 Identities=3% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|||.+++.|+||++.||.||+.++|.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999874
No 64
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.27 E-value=0.011 Score=69.43 Aligned_cols=268 Identities=12% Similarity=0.138 Sum_probs=183.5
Q ss_pred chHHHHHHHHHhhhcC-ChhH--HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHH-HHHHHHHhhhcc
Q 007424 2 AHALKTSVNGLLNKLS-DRDT--YSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECI-HVIATLSNSHNL 76 (604)
Q Consensus 2 ~~eLk~rvl~~L~KLs-DrDT--~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI-~lLGvLae~h~i 76 (604)
+++.-..++..|..|. +.+| +.-++..|-..+..++++. ...|...+.-.... ++...|-.. -+++.+.- .+
T Consensus 153 ~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~--~~ 229 (759)
T KOG0211|consen 153 GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYV--SL 229 (759)
T ss_pred chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhcc--CC
Confidence 3566777788888874 7777 8889999999999998887 35555555432222 444433222 33333321 11
Q ss_pred c-ccHH-HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 77 S-PYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 77 ~-p~L~-kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
. +-+. ++.+...+.-+|-.+.||.|++.-+|.+|..+......+.+.|.+..|..|....|+..|.-++..+.+...+
T Consensus 230 ~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 230 PDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred ChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 1 2222 3444455556778889999999999999999976445558888888887665557999999999998888776
Q ss_pred CChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 155 PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
+. +....+++.++++.+..+-.+..++...--.+.. .|.. .+-....+.....+.++.|..|.+++--...++...
T Consensus 310 ~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 310 DD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 55 6677899999999999888777665553333332 3331 122245666777778899999999999999999877
Q ss_pred C-cchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 234 K-DAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 234 g-e~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
. +.+... ...++..+..+=-|...+||.+...-+--.+-+-+
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~ 430 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP 430 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC
Confidence 6 444433 34555777778889999999987665554444443
No 65
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.21 E-value=0.023 Score=60.36 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc--c--chhHH-HHHHHHH
Q 007424 57 PGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG--A--SAFVT-MLKLLSD 127 (604)
Q Consensus 57 p~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~--d--~~~~s-llkPL~e 127 (604)
...|.+++..|-.+-..| ++..+..-|+..+.+.|+=..+.=+..|+.+++.++=.+. . ..+.. +.++|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 578999998887776555 7777888899999999998887667778888999888864 2 11222 5555555
Q ss_pred HHccCCC--hhHHHHHHHHH--HHHHhhcCCCChhhHHHHHHHHHHHh--cCC----------chhHHHHHHHHHHHHHh
Q 007424 128 ALFTEQD--TNAQVGAALCL--AATIDAAQDPDAGKLGRMEVRLERLL--KSE----------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 128 aL~~eqd--k~vQ~~AA~cL--aalIE~a~d~i~~yL~~L~~RL~klL--~s~----------~~kaK~alLsaIGSiA~ 191 (604)
.+. +.. ..+...++.|| ..++-+.+.....-+-+.|.-++... +.. +..+..++|.+-+-++.
T Consensus 137 ~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 137 ILT-DSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 553 333 23323333344 45554333222222224555443322 221 23577888888887775
Q ss_pred -cCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 192 -SGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 192 -ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+.. .+..+....+|.|.+.|.++|-.+|.+|-++|+-|-....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 216 TLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 332 1335567789999999999999999999999998866443
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.13 E-value=0.038 Score=66.83 Aligned_cols=235 Identities=12% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh-hh-----cccccHH
Q 007424 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSN-SH-----NLSPYIT 81 (604)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae-~h-----~i~p~L~ 81 (604)
+..|+--|--.+|..-|+..|-.+++.++-+. |-.+|+++.-....+.+.+|-.|+..|..+-. .- ...=+.+
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 44566666678888899999999999987655 43333333333334556889888877766522 22 1112567
Q ss_pred HHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhcc------------------------c-------hhHHHHHHHHHHH
Q 007424 82 KIINSITRNFRD-KNSALQATCISTVSSLSPRVGA------------------------S-------AFVTMLKLLSDAL 129 (604)
Q Consensus 82 kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d------------------------~-------~~~sllkPL~eaL 129 (604)
-|+|.|...+.| ....||-|-+..|++||.-.-+ + ..+..+.-++-.|
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH
Confidence 778888888999 6667999999999999876531 0 0111233333344
Q ss_pred ccCCChhHHHHHHHHHHHHHhh-----cCCCChhhH--------------------------------HHHHHHHHHHhc
Q 007424 130 FTEQDTNAQVGAALCLAATIDA-----AQDPDAGKL--------------------------------GRMEVRLERLLK 172 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~-----a~d~i~~yL--------------------------------~~L~~RL~klL~ 172 (604)
+.+..+.|..+-...+.-++-. ..|.++..| .-|+|=|.+.|.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 4444444433322222222221 122221111 113344444444
Q ss_pred CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---------cchhhhhhH
Q 007424 173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---------DAVPEFKGK 243 (604)
Q Consensus 173 s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---------e~f~py~~~ 243 (604)
.+--.+-.-+|+++..++.-|-.-.++.-.+++...++|-..+..+|.+++..|.+++.-.+ .++.||..+
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc
Confidence 44222222333344444433322237777788888888888888899999999999998433 356666543
No 67
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.029 Score=63.57 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=147.2
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|-+.|..-.++---.+--++.+++-.+++...-...+...++.+.-.|+-+..+.|-+|...|.+||-.. +....
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~ 339 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVS 339 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceee
Confidence 4444444444444322355666777766666655334457888999999999999999999999999999886 34445
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHH---------HHHhh-------cCCCC----hhhHHHHHHH-----------HHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLA---------ATIDA-------AQDPD----AGKLGRMEVR-----------LER 169 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLa---------alIE~-------a~d~i----~~yL~~L~~R-----------L~k 169 (604)
.|.|=++.|..+.++++...|..-|- +++.- ..|.. ++.+..|+-. |..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 88888888887777776655544441 11111 11111 2223322221 222
Q ss_pred -HhcCCchhHHHHHHHHHHHHHh-cC---cC-------cC---CchHHH--------------------HHHHHhhhcCC
Q 007424 170 -LLKSEVFKAKAAGLVVVGSVIG-SG---AV-------DG---SGLKGL--------------------VSCLLGFLSSQ 214 (604)
Q Consensus 170 -lL~s~~~kaK~alLsaIGSiA~-ag---~~-------f~---pyf~~l--------------------m~~L~e~L~s~ 214 (604)
|++...++-|.+.+.||.-++. .. +. |. .|-+.+ +..+-..+.-+
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE 499 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE 499 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh
Confidence 3334488888888888887664 10 00 10 111111 11222222235
Q ss_pred cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 215 DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 215 Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+--+|.+|..||..+|....+.+.| .++..+|..|--|+--.|||-|.=+|..+.
T Consensus 500 N~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 500 NNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7788999999999999988888874 588999999999999999999999988886
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.07 E-value=0.017 Score=56.15 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHH
Q 007424 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~ 104 (604)
|+-.|--|+.-.| .-+.++++.|.....+++|.+|+.|+++|.-|....++ ..=+.++..+.+.|.|+|+.||++|..
T Consensus 8 ~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~ 85 (178)
T PF12717_consen 8 AIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENPEIRSLARS 85 (178)
T ss_pred HHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCHHHHHHHHH
Confidence 3444433444333 23556666666666677899999999999998665522 222444566677789999999999999
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHccCC-Ch----hHHHHHHHHHHHHHhhcC-CCC-hhhHHHHHHHHHHHh
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFTEQ-DT----NAQVGAALCLAATIDAAQ-DPD-AGKLGRMEVRLERLL 171 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~eq-dk----~vQ~~AA~cLaalIE~a~-d~i-~~yL~~L~~RL~klL 171 (604)
.+..+........+...++.++..|.+.. .+ .....--.-+.-+++.+. +.. ...+.+||+|+....
T Consensus 86 ~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 86 FFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999988633446668888888884321 11 112222333455666665 322 234566666666554
No 69
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.04 E-value=0.014 Score=68.91 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=139.4
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---------------chhHHHHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA---------------SAFVTMLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---------------~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
|--.++..|++| .+=.++++++..+...... |.+-.-+-|.+...+..+......-=-.+|.-
T Consensus 816 ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 816 IAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 344455566554 4556677777776655432 12222223333333332211122223456788
Q ss_pred HHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCc---HHHHHHH
Q 007424 148 TIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQD---WAARKAA 222 (604)
Q Consensus 148 lIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~D---w~lRkaA 222 (604)
++-+.+.++ .+.++.|.|=|++.|..++.-+|-..+.+|--..- .+.-..-|+..++|.+...=.+.| ..+|-.|
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 888877654 68899999999999999999999888888876553 444445788888888877655555 7899999
Q ss_pred HHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 223 AEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 223 aDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+.+|+.|.+..+ ..+.||...+|+.|+-|-=||=..||.-|.++=|.|-.|...
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~s~ 1028 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLGSK 1028 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcccC
Confidence 999999999877 899999999999999999999999999999999999887654
No 70
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.04 E-value=0.0079 Score=62.28 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=112.1
Q ss_pred cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH--HHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 36 VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 36 L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~--kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|+++.|..|+.+|.. +.+|..++.++.++|..+..-+-...+. -.++.|.+.|.+|++.||.-|++|+..|+...
T Consensus 9 l~~~~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 677778887777763 4578999999999999755222222222 25778999999999999999999999998886
Q ss_pred ccchhH-HHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 114 GASAFV-TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 114 ~d~~~~-sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
..+... .++..+++.+... -+..+|.++..+|..+. ..+..-..+...++.|+.+|.+.+-++|..++-++.-++.
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 544322 3788888876543 47789988888887773 2333345677788889999999998999888887776663
No 71
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0045 Score=65.47 Aligned_cols=174 Identities=21% Similarity=0.183 Sum_probs=117.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
-..-|.....-.++.+|...=.++..|-.|++.| .+.+.|.+++-+|++.++.+-+.|-.|+|.|++.|...+-+. +
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-I 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344444445566788999999999999999999 999999999999999999999999999999999999998431 1
Q ss_pred HHHHHHHHHHHcc--CC-ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHh--c
Q 007424 119 VTMLKLLSDALFT--EQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA-AGLVVVGSVIG--S 192 (604)
Q Consensus 119 ~sllkPL~eaL~~--eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~-alLsaIGSiA~--a 192 (604)
...+..|+-.|++ .+ +.-+...|--||-+|+..... .++++.|.-.+.+....++. +.+-....++. +
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 1267777777763 22 444777788888899887643 44555555555554333321 11111121221 2
Q ss_pred CcCcCCchHHHHHHHHhhhcCCcHHHHHH
Q 007424 193 GAVDGSGLKGLVSCLLGFLSSQDWAARKA 221 (604)
Q Consensus 193 g~~f~pyf~~lm~~L~e~L~s~Dw~lRka 221 (604)
.+.-.+|...+++.+++-+.+.-..+|++
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~ 267 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREA 267 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccc
Confidence 22233566667777777776654444433
No 72
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.00 E-value=0.02 Score=67.82 Aligned_cols=187 Identities=15% Similarity=0.110 Sum_probs=149.4
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-c--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-A--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
-+++|-+.+...+.|++..=|..+++.|....+.-. + .....++..++...+-|.|.++-.-||.||..+.-.+...
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 377888899999999999999999999988877653 1 2344588888888876778888899999999999999888
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
..+|...+.|.|+..|...-..++.+++.++-++..+. .+...++.+.+++.+-.-+.|......+...-.-.+
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 88899999999999998887788888888887666532 245788999999999999999998888888776554
Q ss_pred -----cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 -----DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 -----e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.+...+..|+.... |+-+.||.|+.+++-....+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHh
Confidence 233334455555555 999999999999998776643
No 73
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.052 Score=65.63 Aligned_cols=231 Identities=12% Similarity=0.176 Sum_probs=162.3
Q ss_pred ChhHHHHHHHHHHHHHhh-----cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 18 DRDTYSQAAKELDSIAAT-----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~-----L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
+.-+++=|.+.|+.+... +....+--+.+.|.+..++...+.|+..+.+|-.|.+.| ...-.+++.||-++=.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 334778888889888776 333336777888888888888899999999999998888 5556789999988877
Q ss_pred ccCCChhHHH---HHHHHHHhhhhhhccc--h----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC-CChhhH
Q 007424 91 FRDKNSALQA---TCISTVSSLSPRVGAS--A----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-PDAGKL 160 (604)
Q Consensus 91 LkDpDs~VR~---Ac~~aLg~LAe~l~d~--~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-~i~~yL 160 (604)
++|-+..-|+ +|+.-+|++...+.+. + ...|+.-|...|.++.- .+-..--.|+..++..-.. ...+++
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~-~~~as~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST-RVVASDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHhccccHHHH
Confidence 7998876555 5555556444444432 2 11277777777765432 2222224444444433222 234899
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f 237 (604)
++|+.-+.-.|.+.+-++..++|+.|.-++.. -..- .||.+.+||.+...+.+---..|+.+--.|-.|..-.| +.+
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999988888888877766653 2222 39999999999996666688899999999999999887 655
Q ss_pred hhhh-hHHHHHHH
Q 007424 238 PEFK-GKCLKIFE 249 (604)
Q Consensus 238 ~py~-~~~i~~Le 249 (604)
.+|. +.--+.|.
T Consensus 906 e~~~pee~~klL~ 918 (1176)
T KOG1248|consen 906 ESFLPEEDMKLLT 918 (1176)
T ss_pred HhhCHHHHHHHHH
Confidence 5554 33344444
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.68 E-value=0.069 Score=61.06 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|.=-++..|+.-+-.+|++|..++|.+++-+ +|. .+|--|++.| .-|+.....+.+.|+.-+.|..+. -.
T Consensus 731 IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai--GPq-dvL~~LlnnL-kvqeRq~RvctsvaI~iVae~cgp------fs 800 (975)
T COG5181 731 ICFELVDSLKSWNKEIRRNATETFGCISRAI--GPQ-DVLDILLNNL-KVQERQQRVCTSVAISIVAEYCGP------FS 800 (975)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc--CHH-HHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhcCc------hh
Confidence 3333444455555567777777777777776 332 2455555555 234444445555555555554331 23
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH---cC--cc
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV---EK--DA 236 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~---~g--e~ 236 (604)
++|-|+.=-..|...+++.+|-++.=..+ .|.+..-|.-.+.|.|.+.|++.|---|..|+..|--|+.- .| |+
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 55556666677777788888888877665 66666788888999999999999999999999999998872 23 34
Q ss_pred hhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 237 VPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 237 f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+. +.+++|=..=||-.++|-.+..|.++.+.++-+.
T Consensus 881 ~I----HLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 881 AI----HLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HH----HHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44 3478888888999999999999999999776544
No 75
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.11 Score=61.13 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHh--hhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q 007424 51 TNSSDKPGVRKECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA 128 (604)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvLae--~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~ea 128 (604)
+..++-++.|-+|++-|.-+.+ .+.-.-+..+++.+....|+|-|+-|.--|..++..|++.+.+ .+++-|.+.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~e~ 810 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLSEE 810 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHHHH
Confidence 3556778999999999999988 5533347889999999999999999999999999999999743 478888885
Q ss_pred HccCCChh-----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHH
Q 007424 129 LFTEQDTN-----AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKG 202 (604)
Q Consensus 129 L~~eqdk~-----vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~ 202 (604)
...+.+++ ...| -|+-++++..++-...|+..|..-+++-++.|+-.-|...++.+|-+-+.- .....+|-.
T Consensus 811 Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 54433332 2233 678888898888888999999999999999887777777777777665521 111135666
Q ss_pred HHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhh-hhhHHHHHHHhc
Q 007424 203 LVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPE-FKGKCLKIFESK 251 (604)
Q Consensus 203 lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~p-y~~~~i~~Le~c 251 (604)
+..+|....+ ++.-.+|.+|++.|..+-...|+.+.| +....+...+.|
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 6666666554 667899999999999999988855555 333344444444
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.66 E-value=0.04 Score=60.39 Aligned_cols=137 Identities=19% Similarity=0.323 Sum_probs=105.1
Q ss_pred HHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh---------h------cccccHHHHHHHHHhhccCC
Q 007424 30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---------H------NLSPYITKIINSITRNFRDK 94 (604)
Q Consensus 30 D~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~---------h------~i~p~L~kIl~~IvrrLkDp 94 (604)
+.++.-.+|.. ..++..|.+...+ +..+..+-++|+++... | +-.-+...++|.+++..++.
T Consensus 259 KaLv~R~~~~~-~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 259 KALVMRGHPLA-TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred HHHHHcCCchH-HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence 33344345543 3334444444443 56799999999999655 2 23345778899999999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
+..++.+++.||+.+-.++..+ ....+++-|+++| .-.+..++.++-.+|..+++..++.+.+|+..|+++|+++
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 9889999999999999998642 2334899999999 6677789999999999999998777789999999999875
No 77
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.12 Score=62.14 Aligned_cols=255 Identities=17% Similarity=0.162 Sum_probs=146.3
Q ss_pred HHHHHhhhcCChhH--HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc-cH
Q 007424 8 SVNGLLNKLSDRDT--YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YI 80 (604)
Q Consensus 8 rvl~~L~KLsDrDT--~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p-~L 80 (604)
-+...|.-|.|.|| +-+|++-+-.++..||++- |.-.++++.+.. .+..=-.+.++||.||..-.+-| -+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e---~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE---DDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC---chhHHHHHHHHHHHHHhcCCcchHHH
Confidence 34456677788884 6899999999999999654 344444443332 12333378899999987664444 68
Q ss_pred HHHHHHHHhhccCCC--------hhHHHHHHHHHHhhhhhhccchhHHHHH-----HHHHHHccCCChhHHHHHHHHHHH
Q 007424 81 TKIINSITRNFRDKN--------SALQATCISTVSSLSPRVGASAFVTMLK-----LLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 81 ~kIl~~IvrrLkDpD--------s~VR~Ac~~aLg~LAe~l~d~~~~sllk-----PL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
+.++|.|++.|.=.+ ..||+|||..+=++++-.......-++. .|+.|+| |.+-+...+|+.|+..
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHHHHHHHH
Confidence 999999999997644 4599999999999988874211111333 3334444 6677888899999877
Q ss_pred HHhhcCCC---C-----hhh-------------------HHHHHHHHHHHh-cCC----chhHHHHHHHHHHHHHhcCcC
Q 007424 148 TIDAAQDP---D-----AGK-------------------LGRMEVRLERLL-KSE----VFKAKAAGLVVVGSVIGSGAV 195 (604)
Q Consensus 148 lIE~a~d~---i-----~~y-------------------L~~L~~RL~klL-~s~----~~kaK~alLsaIGSiA~ag~~ 195 (604)
.|---+.. + ..| ++.++..++.-| .+. +.+.+....-++.=+..-
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~--- 574 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT--- 574 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---
Confidence 76542221 1 112 122333333322 222 223444333333322111
Q ss_pred cCCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhh--------hHHHHHHHhccCcch--hHHHHH
Q 007424 196 DGSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFK--------GKCLKIFESKRFDKV--KVVREV 262 (604)
Q Consensus 196 f~pyf~-~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~--------~~~i~~Le~cRfDKv--K~VRda 262 (604)
-+-|+. ..+|-|.++.-..|-..|-.+.-+.|.+..... +..-++. .+++.-+...+|++= -..|.+
T Consensus 575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~ 654 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA 654 (1133)
T ss_pred hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence 123443 345666666666777777777777777666543 2112222 123445555566655 234444
Q ss_pred HHHHHHH
Q 007424 263 MNKMIEA 269 (604)
Q Consensus 263 ~~~AL~~ 269 (604)
....++.
T Consensus 655 ~~~~Ie~ 661 (1133)
T KOG1943|consen 655 TLKFIEQ 661 (1133)
T ss_pred HHHHHHH
Confidence 4444443
No 78
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.12 Score=60.39 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=128.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
+.+|+..|.....+-.-.+=-++-+++-.+.... .++| -++++.-.|.-|.+.+|-||..+|-.+|..... .
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~--~ 316 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ--A 316 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc--c
Confidence 4444444444333322233334444444443322 4445 566777778889999999999999999987632 2
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHH---------HH-------HHhhcCCCC----hhhHH----------H-HHHHH
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCL---------AA-------TIDAAQDPD----AGKLG----------R-MEVRL 167 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cL---------aa-------lIE~a~d~i----~~yL~----------~-L~~RL 167 (604)
...+.+=++.|..+.++.+..-|-.-| ++ ++-...|.. ++.+. . +|.=|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 234555555555555544332222222 11 111111211 11111 1 44446
Q ss_pred HHHhcCC-chhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHh------------hh---------------------c
Q 007424 168 ERLLKSE-VFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLG------------FL---------------------S 212 (604)
Q Consensus 168 ~klL~s~-~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e------------~L---------------------~ 212 (604)
..+|+.. .|.-|.+.+.+|-.++.-.... .+-+..++..+.+ .| .
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 6777766 8889999999999988621111 1222222222211 11 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 213 SQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
-++.-+|.+|.-+|+.++ .+ +... .+++-+|..|-+|+.-.|||.|.-+|..+.
T Consensus 477 LEn~ivRaaAv~alaKfg--~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFG--AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHh--cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 257888999999999998 33 2222 567899999999999999999999988876
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.46 E-value=0.0032 Score=49.16 Aligned_cols=54 Identities=24% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 216 WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 216 w~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
|.+|.+|+.+||.++...++.+.||...++..|-.+=-|.-..||.++..||..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 899999999999988888889999999999999988888888999999999863
No 80
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.44 E-value=0.14 Score=53.78 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCCCC-hHHHH-HhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHH
Q 007424 24 QAAKELDSIAATVDPTL-LPTFL-SCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~-ip~fL-~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR 99 (604)
++...|+..-..+++.. +.-++ ..|.+...+.++.+|+.|+++||.+|-.. .-..|++-++..+.+ | +..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence 34455666666676655 65656 45578999999999999999999998877 666677777666633 3 88899
Q ss_pred HHHHHHHHhhhhhhcc-----chh-------HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 100 ATCISTVSSLSPRVGA-----SAF-------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d-----~~~-------~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
-.|+.++.-+.-...- ... ..+++-+...|. ..++.+|..|+-+++++.=+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence 9999999888766542 111 237777777774 44778999999999998765
No 81
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.36 E-value=0.11 Score=61.59 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=153.6
Q ss_pred CChhHHHHHHHHHHHHHhhc----CCCChH---HHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---------------
Q 007424 17 SDRDTYSQAAKELDSIAATV----DPTLLP---TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------------- 74 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L----~pe~ip---~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--------------- 74 (604)
|..|-.-+|.+.|--+.+.| .|+..+ .||.+|. + |...+.+..+|.++....
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls----~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riL 859 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS----G--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRIL 859 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC----C--ccccchHHHhhHhhhccChHHhhhccccchhHH
Confidence 34455666776664444443 555544 4444443 2 567778888898873322
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+-.-+.-.|+|.+++.+.-.+..++.--+.+|..+-.+... +.+..+++.|+++| +-.|..++..+-.|+.-++.
T Consensus 860 ykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 860 YKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHH
Confidence 22335677899999999966666777777777776666644 23556899999999 67888899999999999888
Q ss_pred hcCCCChhhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHH
Q 007424 151 AAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEA 225 (604)
Q Consensus 151 ~a~d~i~~yL~~L~~RL~klL~s~~---~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDa 225 (604)
..+.-..+|+..+.|.++-+=.+++ --++..+|.+++++.. .- ....||-+.++..|...|.+.---+|+.|+++
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 8888788999999999999887775 4588999999999886 33 33359999999999999999999999999998
Q ss_pred HHHH
Q 007424 226 LWRL 229 (604)
Q Consensus 226 Lg~L 229 (604)
=+.-
T Consensus 1019 R~~W 1022 (1030)
T KOG1967|consen 1019 RQNW 1022 (1030)
T ss_pred hhhh
Confidence 6543
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.35 E-value=0.0062 Score=42.86 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
++|.+.+.+.+++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999863
No 83
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.34 E-value=0.024 Score=50.15 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=65.9
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhhhc-ccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q 007424 49 LSTNSSDKPGVRKECIHVIATLSNSHN-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSD 127 (604)
Q Consensus 49 ~e~~ss~kp~~RKaaI~lLGvLae~h~-i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~e 127 (604)
.....++.+++|-+|+..|.-|.+... ..-++++|+......|+|+|+-|.-+|..+++.|++...+ ..++-|++
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~~L~~ 84 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLPILLD 84 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHHHHHH
Confidence 344567789999999999999999884 6778999999999999999999999999999999999732 36666666
Q ss_pred HHc
Q 007424 128 ALF 130 (604)
Q Consensus 128 aL~ 130 (604)
...
T Consensus 85 ~y~ 87 (92)
T PF10363_consen 85 EYA 87 (92)
T ss_pred HHh
Confidence 653
No 84
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.33 E-value=0.025 Score=56.08 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA-AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG---- 191 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~-a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~---- 191 (604)
+++-+|+-+++-|.....| -.--|..+...+++. .++.+++.+++|+.-|-++|++.+..+..+.|.++.-++.
T Consensus 35 dy~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3556888899999544444 444556666677777 7788899999999999999999999999999998888742
Q ss_pred cCcCcCCchHHHHHHHHhhhcCC-----------cHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 192 SGAVDGSGLKGLVSCLLGFLSSQ-----------DWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~s~-----------Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
+|.+..||+.+++|.+.-|.... .-.++-...|+|..|-...| ++|...
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nI 174 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINI 174 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHH
Confidence 45555699999999998666432 24556667778888877777 666543
No 85
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.16 Score=62.94 Aligned_cols=146 Identities=11% Similarity=0.202 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDK 94 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDp 94 (604)
-|+|+++.++..| |.+-+-.+ |-++|..|.-....+.+..|--|+++|..+++.- .|. -.+.+-..|..|+.|+
T Consensus 792 ~d~~~a~li~~~l---a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL-~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYL---AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL-SRPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHH---HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh-cCHHHHHHHHHhhccc
Confidence 3566666666544 22223333 7778888887777888999999999999999977 332 3466778999999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 95 NSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
..+||+||++=+|++.-.. +... -|..-+.+-+. |..-.|...+---|-.+++.-++- +..+.+|.|++.-.
T Consensus 868 sasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSI--PELIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRV 940 (1692)
T ss_pred hhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHh
Confidence 9999999999999887664 2211 27777777774 445567788888888888876553 33344444444333
No 86
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.22 E-value=0.021 Score=56.53 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH---HHHcCcchhhhhhHHHHHHH--
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL---AVVEKDAVPEFKGKCLKIFE-- 249 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L---A~~~ge~f~py~~~~i~~Le-- 249 (604)
.|-|.......+-. .++....|.++++|..|...|...|-++..+++.+|..| ...+|+.+-||-.+++.+|+
T Consensus 55 ~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 55 RFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66677666666653 234445699999999999999999999999999999999 66889999999998888888
Q ss_pred -hcc--------CcchhHHHHHHHHHHHHHHhCCCC
Q 007424 250 -SKR--------FDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 250 -~cR--------fDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+++ |.|-+.++|.+.++|+++-+-.|.
T Consensus 133 ~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 133 KNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 233 467789999999999999876654
No 87
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.2 Score=60.33 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=125.0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD- 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i- 156 (604)
.+..-.|.+.+.+|+ .+|+++.++++.++.-+-. ..+.. ++.-.+..+-...+..+..|-.+++..+ +...
T Consensus 676 e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~l----p~~~i 750 (1133)
T KOG1943|consen 676 ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVL----PSELI 750 (1133)
T ss_pred HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccC----cHHhh
Confidence 334445556667888 9999999999999887754 22222 3344444553333445555655555443 3222
Q ss_pred -hhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cC-----cCcCCchHHHHHHHHhhhcCC----cHHHHHHHHH
Q 007424 157 -AGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SG-----AVDGSGLKGLVSCLLGFLSSQ----DWAARKAAAE 224 (604)
Q Consensus 157 -~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag-----~~f~pyf~~lm~~L~e~L~s~----Dw~lRkaAaD 224 (604)
.++...+|..++..+-+. ...++.+.+.++..+.. .+ +.+..|++.++.+|.+|.++. -..+|++|+-
T Consensus 751 ~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~ 830 (1133)
T KOG1943|consen 751 HRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMK 830 (1133)
T ss_pred chHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHH
Confidence 245566777777777666 56677777776666554 22 223478888889999998764 3778999999
Q ss_pred HHHHHHHHc--Ccchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 225 ALWRLAVVE--KDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 225 aLg~LA~~~--ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+|..+-... ++.|.+. ...|+.-|=.-=+|||+.-|+-+..+++..
T Consensus 831 al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 831 ALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 999998855 3677664 466676677788899999999988888765
No 88
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.01 E-value=0.99 Score=47.07 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC-----ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhc
Q 007424 18 DRDTYSQAAKELDSIAATVDPT-----LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe-----~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
|..++.-|+..|-.+...+|++ ++..++..+.+-.. +...=..++..+-.|..-. +-.....+|+..|.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 4446777888888888888854 36777777776663 3334444477777777544 44556777777777755
Q ss_pred cCCC--hhHHHHHHHHHHhhhhhhcc--chh-HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 92 RDKN--SALQATCISTVSSLSPRVGA--SAF-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 92 kDpD--s~VR~Ac~~aLg~LAe~l~d--~~~-~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
.-+. ..+|..+..-+-.|.++..+ ... ..|+.-++.++-||.||---.-++--+..++...+ +....+.
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~------~~~~~e~ 163 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD------ISEFAED 163 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc------cchhHHH
Confidence 4433 35798888888888777532 111 13888888888889999766666766666666543 1334444
Q ss_pred HHHHhc--------CC---ch-----hHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 167 LERLLK--------SE---VF-----KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 167 L~klL~--------s~---~~-----kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
++..+. .| .+ ..|.++..|+. +... |.+.++|.|.+-|.++.-.++.-++++|..-.
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----s~~~---fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----STPL---FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----CcHh---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 444442 11 11 24444444444 2222 33568999999999998889999999999988
Q ss_pred HHcC-cchhhhhhHHHHHHH
Q 007424 231 VVEK-DAVPEFKGKCLKIFE 249 (604)
Q Consensus 231 ~~~g-e~f~py~~~~i~~Le 249 (604)
...| +.+.||...+...|.
T Consensus 237 ~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 237 ENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHCCHHHHHHHHHHHHHHHH
Confidence 8887 788999888877765
No 89
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.96 E-value=0.16 Score=49.00 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=88.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccc
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+..+...|.....+..+..|-.|+.+++++++.+ .+..|-...+..+++-|+.+++ .+..+|+.++..|-.++.+-
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7778888888888888999999999999998885 5556667777777777777776 58999999999999988752
Q ss_pred h----------hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 117 A----------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 117 ~----------~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
| ...|+.+++..+- + ......+.-+|..++..-+....++..++-.-+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~-~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ-D--SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 2 2225555555541 1 34555666667777776555555555554444433
No 90
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.81 E-value=0.068 Score=51.59 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=85.4
Q ss_pred hHHHHHhhhhcCCCC-CCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhh--ccCCChhHHHHHHHHHHhh--hhhhcc
Q 007424 41 LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRN--FRDKNSALQATCISTVSSL--SPRVGA 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~-kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Ivrr--LkDpDs~VR~Ac~~aLg~L--Ae~l~d 115 (604)
.|.||..|.....+. .+..|+|++++||+|... .||.-|.+..-... -.+.+....+......+.. .+..
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL---DP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~-- 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL---DPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY-- 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc---CcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH--
Confidence 566666665553333 378999999999999764 46665532211111 1122222333333222221 1111
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+.. .+.-|+..|-+..-......+..|+-.++..++....+||++++|.++..+.+.....+..++.-++.++.
T Consensus 83 --y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 --YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 112 45556665522222334457788888888877777799999999999999986655777777777776653
No 91
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.68 Score=54.36 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=126.5
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHH--------HHHH
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCI--------STVS 107 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~--------~aLg 107 (604)
.|+-+.+|++.+.+...+..+++||.||.+++.+=... .+.|--|.|+...+-+=+||. --|+|-. .|+.
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN 206 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence 45557888999999999999999999999999986655 667888999887776555554 1233321 1222
Q ss_pred hhhhhhcc-----------------------chhHH-HHHHHHHHHcc----------------CCChhHHHHHHHHHHH
Q 007424 108 SLSPRVGA-----------------------SAFVT-MLKLLSDALFT----------------EQDTNAQVGAALCLAA 147 (604)
Q Consensus 108 ~LAe~l~d-----------------------~~~~s-llkPL~eaL~~----------------eqdk~vQ~~AA~cLaa 147 (604)
-+.....+ +.... |++-++..|+. .+++.+-.+||.|+-.
T Consensus 207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID 286 (948)
T ss_pred HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence 22222111 01111 45555555532 3467788899999877
Q ss_pred HHhhcCCCC----------------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-------------------
Q 007424 148 TIDAAQDPD----------------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS------------------- 192 (604)
Q Consensus 148 lIE~a~d~i----------------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a------------------- 192 (604)
+++...|.- ...+..|.--++.+|+++++.++.-.++.+--++..
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence 776644321 122455666677888888776654444432222211
Q ss_pred --------------------CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 193 --------------------GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 193 --------------------g~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
.-.|+.+...+++.|.+|+++.+-. +|.+.|..+-.+. +.|+..+..+|.-|
T Consensus 367 ~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~---aas~vl~FvrE~i-ek~p~Lr~~ii~~l 438 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEA---AASDVLMFVREAI-EKFPNLRASIIEKL 438 (948)
T ss_pred cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHH---HHHHHHHHHHHHH-HhCchHHHHHHHHH
Confidence 1224566677888899999877654 5777777766644 45555555554443
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.46 Score=55.89 Aligned_cols=231 Identities=14% Similarity=0.146 Sum_probs=130.1
Q ss_pred cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 36 L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|+.++ +--+.++|..-..+++-++-=-|+-+||.+|.. ...+-+.|-|.+.|+-+++.||.=|+-++.++-...
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 35555 455667777777777767666677777766442 234455556666678888888887776666665554
Q ss_pred ccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--------------------------------ChhhH
Q 007424 114 GASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--------------------------------DAGKL 160 (604)
Q Consensus 114 ~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~--------------------------------i~~yL 160 (604)
+.... |+.+--..| .+.+..|-.+..--+-.+|+..++. ..|+|
T Consensus 174 --P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 174 --PDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred --chHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 22223 444444444 4444443332222223333321110 12445
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-------cCcCc--------------CCchHHHHHHHHhhhcCCcHHHH
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-------SGAVD--------------GSGLKGLVSCLLGFLSSQDWAAR 219 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-------ag~~f--------------~pyf~~lm~~L~e~L~s~Dw~lR 219 (604)
+--+-||+++|.+.+-.+....-..++=++. +|.+. .+-..-.+.+|..||.+.|-.+|
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee
Confidence 5555555566655554444443344443332 12111 12233456777888888888888
Q ss_pred HHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc-------------cCcchhHHHHHHHHHHHHHHhC
Q 007424 220 KAAAEALWRLAVVEKDAVPEFKGKCLKIFESK-------------RFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 220 kaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c-------------RfDKvK~VRda~~~AL~~wK~i 273 (604)
=.|+.+|..+......+...+...+++.|+.- +.=+-.-||.-|.|.|..+-..
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS 397 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Confidence 88888888887777778888888888877711 1112234666666666666544
No 93
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=1.1 Score=53.33 Aligned_cols=226 Identities=12% Similarity=0.096 Sum_probs=148.9
Q ss_pred HHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 8 SVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 8 rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+.-.++..+.|+. +.-.|+++|..++++=.+.+ -.-+|....++..+.++++==.||+.+..||+.+ .|-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il--- 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL--- 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH---
Confidence 3455677777776 77889999999998654444 2556777778888899999999999999999986 332
Q ss_pred HHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC
Q 007424 81 TKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 81 ~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
|.+.......=+- +|-.++ .-+|++.++... ++... |.-+|+...+ .+++-...+.++..|..++....-
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lk--VGEai~k~~qa~--Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLK--VGEAILKVAQAL--GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHHhcccCCCccceeh--HHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3333322221111 233222 115555555554 23223 5666666554 455545678888888888887654
Q ss_pred CChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCC----chHHHHHHHHhhhc-CCcHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGS----GLKGLVSCLLGFLS-SQDWAARKAAAEALW 227 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~p----yf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg 227 (604)
..-..+.++...+..+...+ .+.+|-+++..|..+-. .|....| |+-.+...+..+.. .+|=.+|.-|+.+|-
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44457888888888888766 78899999998887775 5544445 33334444445554 456778888999988
Q ss_pred HHHHHcC-cchhhh
Q 007424 228 RLAVVEK-DAVPEF 240 (604)
Q Consensus 228 ~LA~~~g-e~f~py 240 (604)
.+-.+.. ..++|-
T Consensus 961 ei~a~l~n~~~~pq 974 (982)
T KOG4653|consen 961 EIQAALENDDDSPQ 974 (982)
T ss_pred HHHHHHHhcccChh
Confidence 8877765 666663
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.27 Score=58.05 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=95.1
Q ss_pred HHHHHhhcC-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH-HHHHHHhhccCCChhHHHHHHHHH
Q 007424 29 LDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTV 106 (604)
Q Consensus 29 LD~lA~~L~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k-Il~~IvrrLkDpDs~VR~Ac~~aL 106 (604)
++.|..++. .+.++-+++-+.....+-+...||=+..-+-+.++.+ |++-. -+.++.+-|+||++-+|..|..++
T Consensus 40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lLavNti~kDl~d~N~~iR~~AlR~l 116 (757)
T COG5096 40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALLAVNTIQKDLQDPNEEIRGFALRTL 116 (757)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 555555553 3337666666655555667788888888777777776 54333 256888888889999998888888
Q ss_pred HhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH--HHHHHHHhcCCchhHHHHHH
Q 007424 107 SSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM--EVRLERLLKSEVFKAKAAGL 183 (604)
Q Consensus 107 g~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L--~~RL~klL~s~~~kaK~alL 183 (604)
+.|-..- +.. ++.|+-..+ ++.++.|...||+|+.++-+--+ .+++.+ +.-+-.++...+..+++.++
T Consensus 117 s~l~~~e----l~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 117 SLLRVKE----LLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK----DLYHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred HhcChHH----HHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH----hhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence 8875442 112 566666666 67778888888888888876533 233333 33444555555666665544
Q ss_pred HHHH
Q 007424 184 VVVG 187 (604)
Q Consensus 184 saIG 187 (604)
.++.
T Consensus 188 ~sl~ 191 (757)
T COG5096 188 ASLA 191 (757)
T ss_pred HHHH
Confidence 4443
No 95
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.47 E-value=0.41 Score=53.38 Aligned_cols=208 Identities=12% Similarity=0.126 Sum_probs=121.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccc-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGAS- 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~- 116 (604)
+..++..+....+..+.+.=|.-+|.+.++.+.. +....|++++..+..-.+. ++|..-+=+.+++|.+-.+..+.
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 4556666655445667788888888888876665 3223333333333333333 46789999999999999987652
Q ss_pred h-----hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHh--cCCchhHHHHHHHHHH
Q 007424 117 A-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLL--KSEVFKAKAAGLVVVG 187 (604)
Q Consensus 117 ~-----~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~klL--~s~~~kaK~alLsaIG 187 (604)
+ +.. +++|+...| .+.-..-.-..+.-|+-++|.-+ +.+.+....|.+.|+.-- +... --++++..+.
T Consensus 108 ~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g--niPalvrLL~ 184 (435)
T PF03378_consen 108 PEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG--NIPALVRLLQ 184 (435)
T ss_dssp HH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT--THHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC--CcCcHHHHHH
Confidence 2 333 555555555 33222234455666788888866 344344444444444221 1111 1267888888
Q ss_pred HHHhcCcC-c--CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHH----HhccCcc
Q 007424 188 SVIGSGAV-D--GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIF----ESKRFDK 255 (604)
Q Consensus 188 SiA~ag~~-f--~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~L----e~cRfDK 255 (604)
+.+..+.. + ..+++.++...+..+.+ .|.. +.+.|.+|-...+ +.+.||...++.+| .+.|-+|
T Consensus 185 a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~----gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 185 AYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY----GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH----HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 87764433 2 27888999999888875 3544 7999999999887 77888877766654 5556665
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.31 E-value=0.61 Score=52.45 Aligned_cols=264 Identities=15% Similarity=0.092 Sum_probs=153.4
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+-..++.+|..=....|...-++-|-.++++-|-++ +--|..++..++.+.++++|-.++.++|.++..|...|-
T Consensus 107 ~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pe 186 (728)
T KOG4535|consen 107 LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPE 186 (728)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHH
Confidence 334455666665555566666667777777777777 355778889999999999999999999999998855555
Q ss_pred HHHHHHH----------------HHhhccCCC------------------------------------------------
Q 007424 80 ITKIINS----------------ITRNFRDKN------------------------------------------------ 95 (604)
Q Consensus 80 L~kIl~~----------------IvrrLkDpD------------------------------------------------ 95 (604)
+.-.+.. -.+.|.|.+
T Consensus 187 i~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~ 266 (728)
T KOG4535|consen 187 VQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY 266 (728)
T ss_pred HHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc
Confidence 5544432 224454443
Q ss_pred --hhHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHH
Q 007424 96 --SALQATCISTVSSLSPRVGA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-----AGKLGRMEVR 166 (604)
Q Consensus 96 --s~VR~Ac~~aLg~LAe~l~d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-----~~yL~~L~~R 166 (604)
+.||--|...|..||.|+.= .-+.-+..-+...+ ++.++.++..++.||+++...+.... ..-+..=+-+
T Consensus 267 ~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 267 EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 45888888899999888731 11112444444444 68899999999999999988864211 1111111112
Q ss_pred HH--------HHhcCCchhHHHHHHHHHHHHHhcC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 167 LE--------RLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 167 L~--------klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
+. .+-++..+-.+.++-.++.+|-.+. ..| |.- -.++-.+..|-.+++--+|.+|+-+++.+....+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l-pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL-PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC-CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 22 2334445555555433333322211 111 221 1233344444434455566666666665544444
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..-.-+...|-+.+-..=|||---||+-+.-++.-+
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 222223334444444444487777888777666554
No 97
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.22 Score=54.28 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=114.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGA-----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+|+++..|+-.|.-||--|+.+++.++-.-.. +...-+++-|++.+ .+.++.++.-|.+||-.+---. +
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt-----~ 283 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDT-----E 283 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccc-----h
Confidence 56888899999999999999999999855421 22333788888877 6778889988888886553322 3
Q ss_pred hHHH-----HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH-HHHHHHhhhcCCc-HHHHHHHHHHHHHHHH
Q 007424 159 KLGR-----MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG-LVSCLLGFLSSQD-WAARKAAAEALWRLAV 231 (604)
Q Consensus 159 yL~~-----L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~-lm~~L~e~L~s~D-w~lRkaAaDaLg~LA~ 231 (604)
|..+ -+|-++++|.++..+.-.+-+.||.-|+-......+..+. .+.-|...|...| -+..-.|.++|.-||.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 4333 3567889998887776666777886555332111111111 2333455555444 3377889999999998
Q ss_pred HcCcchhhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 232 VEKDAVPEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 232 ~~ge~f~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
........+. .-.|..|-..-.|---.||+-+.-++..+
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 4432222221 12233333333488888999888877665
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.71 Score=53.53 Aligned_cols=207 Identities=13% Similarity=0.063 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHHHhhhcccccHHHHHHH-HHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChh
Q 007424 58 GVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTN 136 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p~L~kIl~~-IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~ 136 (604)
..|-.++...+.++....-.+|-++-+.- ++.-..|.|+.||.+|+++|=+|++ ..+-+ ....+-..+.| .+.+..
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~-~~~Y~~A~~~l-sD~~e~ 249 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLS-KACYSRAVKHL-SDDYED 249 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-ccccc-HHHHHHHHHHh-cchHHH
Confidence 34555555555554444333566655554 8888999999999999999999988 32211 12445555555 343444
Q ss_pred HHHHHHHHHHHHHhhcC-CCC------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch--------
Q 007424 137 AQVGAALCLAATIDAAQ-DPD------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-------- 200 (604)
Q Consensus 137 vQ~~AA~cLaalIE~a~-d~i------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-------- 200 (604)
|..+|...+ -+.-+.. -+. ........-+++..++.-+..++..+.-++|.+-++...|. +-+
T Consensus 250 VR~aAvqlv-~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~l 328 (823)
T KOG2259|consen 250 VRKAAVQLV-SVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRL 328 (823)
T ss_pred HHHHHHHHH-HHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhh
Confidence 555544333 2222211 000 11223334444455544444444444444444333321110 000
Q ss_pred --------------------------------------HHHH-----HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 201 --------------------------------------KGLV-----SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 201 --------------------------------------~~lm-----~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
..+| ..++.-|.++-.++|++|.+.|+.||..-+.
T Consensus 329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-- 406 (823)
T KOG2259|consen 329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-- 406 (823)
T ss_pred hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC--
Confidence 0111 1122233446689999999999999986543
Q ss_pred hhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 238 PEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
|+.+++..|-.-=.|-|-.||--++.||..+-.
T Consensus 407 --FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 407 --FAVRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred --cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 445566666555569999999888777765543
No 99
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.26 E-value=0.33 Score=48.16 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhhhccchhHH---------------HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--------
Q 007424 98 LQATCISTVSSLSPRVGASAFVT---------------MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-------- 154 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~s---------------llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-------- 154 (604)
||.++...+..++.......++. .-.+|+..++.|.++.++.+|+.+|+.++|+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 78888888888888854311111 3445666676788999999999999999998411
Q ss_pred C--C---h-------hhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcC--cCcC-CchHHHHHHHHhhhcCCcHHH
Q 007424 155 P--D---A-------GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSG--AVDG-SGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 155 ~--i---~-------~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag--~~f~-pyf~~lm~~L~e~L~s~Dw~l 218 (604)
. - . ..+.++=..|..+|..+ +..+-.+++-++..++++- .... .++..++..+..++.+.|-.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 0 0 11222333466666666 6666678888999888753 2333 677889999999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 007424 219 RKAAAEALWRLAVVE 233 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ 233 (604)
|-++.-+|+.+..+.
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999988754
No 100
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.28 Score=51.33 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=109.6
Q ss_pred CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 38 pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.+.+|++..-+.+. ++.|-+|-++-.+||.+. + .+.++|.|+ .+||-..|+..|.-|+.++-..-.-.
T Consensus 66 ~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~~~~~~l~k~-------~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DPESLEILTKY-------IKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--chhhHHHHHHH-------hcCCccccchHHHHHHHHHHHhhccc
Confidence 34477777777754 557888888888888776 3 444455444 57888888988888888874332100
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHH---HHHHhcC
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVV---GSVIGSG 193 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaI---GSiA~ag 193 (604)
.. .--.|... .++.+..-.+. +..+=+.+-|.-.+.+.+. .-++.+=+...-.+-.+++.-+ .++...+
T Consensus 135 ~~-~~~~p~~S---vdPa~p~~~ss---v~~lr~~lld~t~~l~~Ry-~amF~LRn~g~EeaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 135 KI-ANSSPYIS---VDPAPPANLSS---VHELRAELLDETKPLFERY-RAMFYLRNIGTEEAINALIDGLADDSALFRHE 206 (289)
T ss_pred cc-cccCcccc---CCCCCcccccc---HHHHHHHHHhcchhHHHHH-hhhhHhhccCcHHHHHHHHHhcccchHHHHHH
Confidence 00 00001000 11111100111 1111111111111222222 1122222222111111111111 1111111
Q ss_pred cCc--CC-chHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 194 AVD--GS-GLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 194 ~~f--~p-yf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+| ++ --+..||.|++-|.+ +.--+|--|+++||.||. +.|+++|...=-|-...||++..-||.
T Consensus 207 vAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 207 VAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111 11 113458888888854 678999999999999987 578888888888999999999999998
Q ss_pred HHH
Q 007424 269 AWK 271 (604)
Q Consensus 269 ~wK 271 (604)
.+-
T Consensus 277 m~e 279 (289)
T KOG0567|consen 277 MLE 279 (289)
T ss_pred HHH
Confidence 764
No 101
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.98 E-value=1.4 Score=52.77 Aligned_cols=190 Identities=16% Similarity=0.113 Sum_probs=128.6
Q ss_pred hHHHHHhhhhc-CCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch--
Q 007424 41 LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-- 117 (604)
Q Consensus 41 ip~fL~~L~e~-~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-- 117 (604)
+..||...... ..+..++.|-.+++++.-.|..|.+.|.+|+|+-.|.....+...-|-.+..+||...+..=.+-+
T Consensus 488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as 567 (1005)
T KOG2274|consen 488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS 567 (1005)
T ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence 56666655433 445567899999999998888778899999999999999999888888888888888877643311
Q ss_pred hHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHh
Q 007424 118 FVTMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK----AKAAGLVVVGSVIG 191 (604)
Q Consensus 118 ~~sllkPL~eaL~~--eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k----aK~alLsaIGSiA~ 191 (604)
..+.+-|++-++|- ..||.|-.-+=-|+..+++.+. --.+|...++|-|+..|..++-+ .-..++..|..+..
T Consensus 568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 22367777777774 4578777777778888888642 12367888999999999888633 33445666665555
Q ss_pred cCcCcC--CchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHH
Q 007424 192 SGAVDG--SGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 192 ag~~f~--pyf~~lm~~L~e~-L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.+.--. -....+.|.+..+ |.++|-++=-.|-|||.++-.
T Consensus 647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 432211 1112233333333 345666666667777766544
No 102
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.98 E-value=2.6 Score=50.10 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=102.8
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|-.-.|+=.-.|..+|+.=|.+.+- .++.+....+++++..|=.||+.++.+-.. ..++.+++.|.+.|.|+.+.
T Consensus 68 d~ElKrL~ylYl~~yak~~P~~~lL-avNti~kDl~d~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ay 142 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKPELALL-AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAY 142 (757)
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHH-HHHHHHhhccCCCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHH
Confidence 4445566666677777765543333 367777778899999999999999988653 46788899999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHH-HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 98 LQATCISTVSSLSPRVGASAFVTM-LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sl-lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
||+.|+.|++.+=+.--+ =.+.. +--+...|..|.+|.|-..|..+|..+.+. ...+|+..++.++-.+.
T Consensus 143 VRk~Aalav~kly~ld~~-l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 143 VRKTAALAVAKLYRLDKD-LYHELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHHHHHHHHHHHhcCHh-hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhhcc
Confidence 999999999987543210 01222 333444555788999887777777766654 34578777777666544
No 103
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.95 E-value=1.4 Score=50.12 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-c---------ccccHHHHHHHH
Q 007424 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-N---------LSPYITKIINSI 87 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~---------i~p~L~kIl~~I 87 (604)
+..-|++.|-.+...+ .|.. +..|+..+........+..|..|++++|.++..+ . +..+++.+...+
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 3344555555555555 2332 6777776655445556789999999999998743 1 122344444444
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL 167 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL 167 (604)
....++.|...+.+++.|||.++...+ ...+.|++..= .+....++..|..||..+.+..+ .++.+.+
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l 519 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDP-------RKVQEVL 519 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHH
Confidence 444455677789999999999987641 12455554410 12355688999999998877544 3344455
Q ss_pred HHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHH
Q 007424 168 ERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAA 223 (604)
Q Consensus 168 ~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAa 223 (604)
+.++.+. +..+|-+++-++- .. .|-. ..+..|.+.+. +.+-+++....
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~lm---~t----~P~~-~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVLM---ET----KPSV-ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHHH---hc----CCCH-HHHHHHHHHHhhcCcHHHHHHhH
Confidence 5555544 6667755444333 11 1222 45566666664 45677766543
No 104
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.90 E-value=0.12 Score=46.94 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
..||.+|+++|.+.+.+ .+...+|+|+.++...|..|+ +|..|+.+-..|...+.+
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 55999999999998877 999999999999999998776 999999999999999854
No 105
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.88 E-value=7.2 Score=42.50 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=127.9
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccC--CChhHHHHHHH
Q 007424 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRD--KNSALQATCIS 104 (604)
Q Consensus 31 ~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~ 104 (604)
.++..|+.+....|+....+...+++ .-+--+...+-+|+... ++..+.+..+-.++..+.+ +..+|-.=.+.
T Consensus 78 ~i~~~l~~d~~~~~i~~~i~~l~~~~-~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 78 EIVSTLSDDFASFIIDHSIESLQNPN-SPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred HHHhhCChHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 35566666554433333333333222 12223333344443322 5666666655565655665 33333333333
Q ss_pred HHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--------------CCCC--hhhHHHHHH
Q 007424 105 TVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--------------QDPD--AGKLGRMEV 165 (604)
Q Consensus 105 aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--------------~d~i--~~yL~~L~~ 165 (604)
++-.|.....+ ......+++|+..|++ ..+.++..|..++..+.-.+ .... ..|...+++
T Consensus 157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~-~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHADIWFPILFPDLLS-SAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 44444444332 1122267777777763 33344443333332222111 1111 146777999
Q ss_pred HHHHHhcC-CchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh--
Q 007424 166 RLERLLKS-EVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE-- 239 (604)
Q Consensus 166 RL~klL~s-~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p-- 239 (604)
||.+++.+ ..++.-.-+=+++-.+..... .-.+|+...+...+.|+.+.|-++|.+|..+...+..+.. +...+
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~ 315 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKR 315 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHH
Confidence 99999988 444432222222222221111 1238999999999999999999999999999999988554 22211
Q ss_pred ---hhhHHHHHHHhccCcchh-HHHHHHHHHHH
Q 007424 240 ---FKGKCLKIFESKRFDKVK-VVREVMNKMIE 268 (604)
Q Consensus 240 ---y~~~~i~~Le~cRfDKvK-~VRda~~~AL~ 268 (604)
....+.-.++..+-+|+| .||+.+...+.
T Consensus 316 l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~ 348 (372)
T PF12231_consen 316 LKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLC 348 (372)
T ss_pred HHHHHHHHHHHhCccccccccHHHHHHHHHHHh
Confidence 113345567777788888 89998877553
No 106
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=2.4 Score=49.71 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=79.8
Q ss_pred cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 36 L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
+|++- +..++.+|.-...+.+-.+|.-++.+|+.+...- +=-.-..+|.-.+..||.|-.+.||--|+.+|..+-+
T Consensus 76 ~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 76 LDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred cCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 34444 6788888888888888899999999999997633 2223467888899999999999999999999998865
Q ss_pred hhccchhHHHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 112 RVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 112 ~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
.-.+... -...-+...+..++++.|..+|-.|+
T Consensus 156 d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 156 DPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 3222211 13444444444567777888888877
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.71 E-value=0.63 Score=48.36 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=112.0
Q ss_pred HHhhccC-CChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--CChhhHH
Q 007424 87 ITRNFRD-KNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--PDAGKLG 161 (604)
Q Consensus 87 IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d--~i~~yL~ 161 (604)
++..|+. .|+.++..++.|+|..+.+-..+.+.. =..+++..|+...++.++..|..||+.+-.+.+. .+..|++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 3444553 678999999999999988864433222 3445555555788899999999999877444322 2235666
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH---HcCcchh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV---VEKDAVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~---~~ge~f~ 238 (604)
.+|..+.-. .-+..++-+.+.+++.+.- -.....-+...|+.+...|...+-.+|-.+.-+|.-|+. ..++.+.
T Consensus 97 ~Vc~~~~s~--~lns~~Q~agLrlL~nLtv-~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 97 QVCEETVSS--PLNSEVQLAGLRLLTNLTV-TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHccCC-CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 666655431 1145566677777776532 222223445567888888888888999999999999887 2234444
Q ss_pred hhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhC
Q 007424 239 EFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 239 py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i 273 (604)
.-. .+.+..|+.+ .=++...++|-..-.|
T Consensus 174 ~q~~~~~~~Lf~~~------~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 174 AQVLSSFLSLFNSS------ESKENLLRVLTFFENI 203 (254)
T ss_pred ccchhHHHHHHccC------CccHHHHHHHHHHHHH
Confidence 322 3445555521 1245556666666665
No 108
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.57 E-value=0.19 Score=45.45 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
....|+.+|+++|.+.+.+ .+.+.+|+|+.++...|..+ .+|..|+.+-..|...+.+.....++..++.++
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3477999999999998866 99999999999999999888 799999999999999985433223444444443
No 109
>PF05536 Neurochondrin: Neurochondrin
Probab=94.56 E-value=7 Score=44.94 Aligned_cols=221 Identities=16% Similarity=0.083 Sum_probs=140.3
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhcCCCC------------h-HHHHHhhhhcCCCCCCc-hhHHHHHHHHHHHhh
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL------------L-PTFLSCILSTNSSDKPG-VRKECIHVIATLSNS 73 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L~pe~------------i-p~fL~~L~e~~ss~kp~-~RKaaI~lLGvLae~ 73 (604)
+-+|+.=| +-+||.|.|. |-.+.+-++++. | +.||.-|.-+...+... ..-..-+++.+|+..
T Consensus 7 l~~c~~lL~~~~D~~rfag--L~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAG--LLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCCcHHHHHH--HHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33444444 2448888876 333333333222 1 46788787665544322 222222445555555
Q ss_pred h-----cccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccch--hHH--HHHHHHHHHccCCChhHHHHHHH
Q 007424 74 H-----NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASA--FVT--MLKLLSDALFTEQDTNAQVGAAL 143 (604)
Q Consensus 74 h-----~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~--~~s--llkPL~eaL~~eqdk~vQ~~AA~ 143 (604)
+ .-.|.+-.-+|.++.-+..++. .+-.=|...|..++.+= ++. +.. -++.|++++.. .+.....|..
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 5 5568888999999999988777 77777777777777432 222 111 78899999853 3344555666
Q ss_pred HHHHHHhhcCCCC----hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc---Cc----CCchHHHHHHHHhhhc
Q 007424 144 CLAATIDAAQDPD----AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA---VD----GSGLKGLVSCLLGFLS 212 (604)
Q Consensus 144 cLaalIE~a~d~i----~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~---~f----~pyf~~lm~~L~e~L~ 212 (604)
.|..++-..+... ...+..++++|.+.+...+-..|-.++..++.+-.-.. .- ......+...|...|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 6655555543221 24567888999999987777778888888888774221 11 1455566677777776
Q ss_pred CC-cHHHHHHHHHHHHHHHHHcC
Q 007424 213 SQ-DWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 213 s~-Dw~lRkaAaDaLg~LA~~~g 234 (604)
+. .-.-|..|....+.|..+.|
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC
Confidence 53 56679999999999999888
No 110
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=1.5 Score=54.78 Aligned_cols=210 Identities=21% Similarity=0.148 Sum_probs=141.9
Q ss_pred HHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCCh----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cc
Q 007424 5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLL----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL 76 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~i----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i 76 (604)
+...+..++-||+=+| |.--|+++|-.+..+.+.+.. |.+...+.+..-+++..+|......+..+.... .+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777887666 999999999999998876663 334444456677778899999999999998888 89
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-----c---------------C---
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF-----T---------------E--- 132 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-----~---------------e--- 132 (604)
+|||..+||.+.=...|++..|..||..++-...+.-- .+... ++.|-+..+. . +
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek-~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK-DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhh-hHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 99999999999999999999999999998877665211 12111 3333333321 0 0
Q ss_pred CChhHHHHHHHHHHHHH-hhcCCCChh---h-HHH--HHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHH
Q 007424 133 QDTNAQVGAALCLAATI-DAAQDPDAG---K-LGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGL 203 (604)
Q Consensus 133 qdk~vQ~~AA~cLaalI-E~a~d~i~~---y-L~~--L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~l 203 (604)
.-+-+-..+-.+|.+++ +.+.+.... + +.. --..+-+++++++..+|.++..++-++.+ ....+. +.-..+
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l 277 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYL 277 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHh
Confidence 01235566777777777 333332222 1 222 33468899999998999999998888876 322223 222334
Q ss_pred HHHHHhhhcCCc
Q 007424 204 VSCLLGFLSSQD 215 (604)
Q Consensus 204 m~~L~e~L~s~D 215 (604)
.+.+.....+.|
T Consensus 278 ~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 278 KPVLLGSIDSLD 289 (1312)
T ss_pred hHHHHccccccc
Confidence 455555554444
No 111
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=3 Score=50.36 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=107.9
Q ss_pred HHHHHHHHH-hhcCCCC-hHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-----cccccHHHHHHHHHhhccCCCh
Q 007424 25 AAKELDSIA-ATVDPTL-LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 25 A~~eLD~lA-~~L~pe~-ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-----~i~p~L~kIl~~IvrrLkDpDs 96 (604)
|.-.|-.++ .+++-.. +.-.+.+...... +..-++|=+|..+|-.+.+.+ ++.||+|.||..+.+..++-+.
T Consensus 482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 444555555 4453333 6666666665555 444699999999999984444 7999999999999999988775
Q ss_pred hHHH-HHHHHHHhhhhhhccchhHH-HHHHHHHHHc---c------CCChhHHHHHHHHH---HHHHhhcCCC--ChhhH
Q 007424 97 ALQA-TCISTVSSLSPRVGASAFVT-MLKLLSDALF---T------EQDTNAQVGAALCL---AATIDAAQDP--DAGKL 160 (604)
Q Consensus 97 ~VR~-Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~---~------eqdk~vQ~~AA~cL---aalIE~a~d~--i~~yL 160 (604)
-.-. .--.-++.+++.+ .|+.. ++..|..... . +.+..-+.+|..|| ..++..+.+- +..++
T Consensus 562 d~Lt~vme~iV~~fseEl--sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l 639 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCKFSEEL--SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL 639 (1010)
T ss_pred hHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3322 2223345666766 56555 6666666543 1 11233556666666 4555554432 33444
Q ss_pred HH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---------------c----CCchHHHHHHHHhhhc
Q 007424 161 GR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---------------D----GSGLKGLVSCLLGFLS 212 (604)
Q Consensus 161 ~~-L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---------------f----~pyf~~lm~~L~e~L~ 212 (604)
.. +.|=+..+|++.-..+-.-+++.+-+.-..... | .-||...|+.|..|++
T Consensus 640 e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 640 EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 44 444455566555444433444433322211111 1 2677777888877775
No 112
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=1.1 Score=48.41 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=120.7
Q ss_pred hHHHHHhh---hhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 41 LPTFLSCI---LSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 41 ip~fL~~L---~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+..++..+ ..+.++..+..|..|+--|..+++-. .+.++ . -|..++..|+++++.||..|++++|..+..=
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence 45555552 22245556778888999999998876 22222 2 2334455899999999999999999999886
Q ss_pred cc-chhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH-HHHHHHHhcC--CchhHHHHHHHHH
Q 007424 114 GA-SAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKS--EVFKAKAAGLVVV 186 (604)
Q Consensus 114 ~d-~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L-~~RL~klL~s--~~~kaK~alLsaI 186 (604)
.+ +.... ++..|+.+|..+..-.+...|-+|+-.+|.+-.+.....+.-- ..-|..+|.+ .+.+.|.=++-.|
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44 12221 8999999996555555778999999999998654433222110 2235566666 3455555556666
Q ss_pred HHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 187 GSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 187 GSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
+.+.+.-..-...+.. .-..+..+....+|+.+-.|.+++-++....
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6666532110001111 1233445556779999999999998887743
No 113
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.46 E-value=0.099 Score=57.01 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHH-HHHHhhcCCCChHHHHHhhhhc------CCCCCCchhHHHHHHHHHHHhhh--------ccccc--
Q 007424 17 SDRDTYSQAAKEL-DSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH--------NLSPY-- 79 (604)
Q Consensus 17 sDrDT~r~A~~eL-D~lA~~L~pe~ip~fL~~L~e~------~ss~kp~~RKaaI~lLGvLae~h--------~i~p~-- 79 (604)
+|-+|.|.|+.+| ..+++.......+.++..+... ..+.+|..+-.||.++|.++.-. .+.++
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 6777777666655 6788887655555655555443 44667888999999999995433 11111
Q ss_pred HHHHH-HHHHhhcc---CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 80 ITKII-NSITRNFR---DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 80 L~kIl-~~IvrrLk---DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
+..++ .+|.--|+ +..+.+|..|++.+..+..++.+.....+++.|+..| ..++..|...||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 22222 22333344 3456799999999999999986544445888888888 677778999999885
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.64 Score=50.41 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=133.8
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHh--hcCC-------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAA--TVDP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN 72 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~--~L~p-------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae 72 (604)
+++..+-+.+..|-.+| .+..|+-....+-. +-|| -.+|.|+..+.+. +.-...-+|--+|..++.
T Consensus 68 q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaS 144 (526)
T COG5064 68 QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIAS 144 (526)
T ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhcc
Confidence 33343444444443233 55566666655432 1233 2267777777532 222344477788888888
Q ss_pred hhcccccH---HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCCh--hHHHHHHH
Q 007424 73 SHNLSPYI---TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDT--NAQVGAAL 143 (604)
Q Consensus 73 ~h~i~p~L---~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk--~vQ~~AA~ 143 (604)
|..-.+++ ---+|..++.|.+++--||+-++||||.+|-.-..-..+. .|.||+..|. ++.. ..-.-|..
T Consensus 145 Gtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TW 223 (526)
T COG5064 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATW 223 (526)
T ss_pred CcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHH
Confidence 87111111 1245677888999999999999999999987653322222 7899999885 3333 34457788
Q ss_pred HHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchH-HHHHHHHhhhcCCcHHHHH
Q 007424 144 CLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLK-GLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 144 cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~-~lm~~L~e~L~s~Dw~lRk 220 (604)
-|..++.+-..++ -.-..+.+|-|+||+.+.+..+-.-+.=||.=+.-.. +.....++ .+++.|.+.|++++-.+.-
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 8899998854443 4567888999999998876654322222222211111 11111111 2567789999888777666
Q ss_pred HHHHHHHHHHH
Q 007424 221 AAAEALWRLAV 231 (604)
Q Consensus 221 aAaDaLg~LA~ 231 (604)
-|+-++|-|.+
T Consensus 304 PalR~vGNIVT 314 (526)
T COG5064 304 PALRSVGNIVT 314 (526)
T ss_pred HHHHhhcCeee
Confidence 66666666544
No 115
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=1.7 Score=47.18 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=115.0
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhcCCCC-------hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cc---
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL-------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NL--- 76 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L~pe~-------ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i--- 76 (604)
.+..++-. .|-+...-|+++|..++.+++.-. +.+++. +..+.++..|+.|...+|.++.-- .+
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56667766 488899999999999999986433 344444 566778899999999999996544 11
Q ss_pred ---cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-H-----HHHHHHHHcc-CCChhHHHHHHHHHH
Q 007424 77 ---SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M-----LKLLSDALFT-EQDTNAQVGAALCLA 146 (604)
Q Consensus 77 ---~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-l-----lkPL~eaL~~-eqdk~vQ~~AA~cLa 146 (604)
.-.|.+++..+. +|.+-.||..++.|++.+-.+- ++-.. | +.-|.++|-. ..++..|..|+.=++
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 224666655554 5555579999999999988775 22111 1 3445666632 256778888888889
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Q 007424 147 ATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI 190 (604)
Q Consensus 147 alIE~a~d~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA 190 (604)
.+++.-...-...-...+++...-+.+. ++.++.+++.++-+..
T Consensus 237 ~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 237 LLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 9988754322233344555555555444 6667777777666655
No 116
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.23 E-value=0.27 Score=52.42 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhc-----C-----CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHH
Q 007424 180 AAGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLS-----S-----QDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 180 ~alLsaIGSiA~ag~~f~-pyf~~lm~~L~e~L~-----s-----~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i 245 (604)
..++..+.|+-.--..|. ||+.++||.|.-||- + +-+++|+.|++.|+.+..-.+......+.++.
T Consensus 254 tTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvt 330 (450)
T COG5095 254 TTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVT 330 (450)
T ss_pred HHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHH
Confidence 445556666555456776 999999999999983 1 24889999999999988876655444544443
No 117
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.18 E-value=0.69 Score=49.96 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHh
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-------~~kaK~alLsaIGSiA~ 191 (604)
..|+.=+.+++.++ +.... ..||..+-. + +.++.|+|+|+..+... +...-..++..+.|+..
T Consensus 177 q~yf~~It~a~~~~-~~~~r---~~aL~sL~t--D----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 177 QLYFEEITEALVGS-NEEKR---REALQSLRT--D----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHhCC-CHHHH---HHHHHHhcc--C----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 34777788888643 22222 123333211 1 23444555544444222 23333445666666664
Q ss_pred cCcCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHH
Q 007424 192 SGAVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVV 259 (604)
Q Consensus 192 ag~~f~-pyf~~lm~~L~e~L~----------s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~V 259 (604)
=...+. ||+-.+||.+..|+. ++.|.+|..|+..|+.|..-.+........++++.|-.-=+|..+++
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 334444 999999999999993 35799999999999999998886555566666666665555766664
No 118
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=3.6 Score=48.60 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=104.3
Q ss_pred CCchhHHHHHHHHHHHhhh-cccc---cHHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH-NLSP---YITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDAL 129 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h-~i~p---~L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL 129 (604)
++.+...|++.++-+...- ..+| -++. |+++|+-.++++-.-++.-+|+.+..+.+...+..+-. .+......|
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4566777888888886622 2233 2333 45567777899999999999999999988876655433 555555556
Q ss_pred ccCCChhHHHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHH
Q 007424 130 FTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSC 206 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a--~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~ 206 (604)
. +++-.|+.-||+||.-++-+. ++..-++++..|++|+.+-+.=...+ +-+++-+++. -..+..||.+.++..
T Consensus 509 ~-nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~---LS~vMe~fVe~fseELspfa~eLa~~ 584 (970)
T COG5656 509 K-NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP---LSMVMESFVEYFSEELSPFAPELAGS 584 (970)
T ss_pred h-cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH---HHHHHHHHHHHhHHhhchhHHHHHHH
Confidence 3 467779999999999998653 44445788999999998875433332 3344455443 345567999999988
Q ss_pred HHh
Q 007424 207 LLG 209 (604)
Q Consensus 207 L~e 209 (604)
|.+
T Consensus 585 Lv~ 587 (970)
T COG5656 585 LVR 587 (970)
T ss_pred HHH
Confidence 866
No 119
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=1.7 Score=51.57 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=133.9
Q ss_pred CChhHHH-HHHHHHHHHHhhcCCCChHHHHHhhh----hc--CCCCCCchhHHHHHHHHHHHhh-------h----cccc
Q 007424 17 SDRDTYS-QAAKELDSIAATVDPTLLPTFLSCIL----ST--NSSDKPGVRKECIHVIATLSNS-------H----NLSP 78 (604)
Q Consensus 17 sDrDT~r-~A~~eLD~lA~~L~pe~ip~fL~~L~----e~--~ss~kp~~RKaaI~lLGvLae~-------h----~i~p 78 (604)
+|-||+| .|...+.-|.++......+.|-..+. ++ +.+-+|..+.-+|-++-.++.- + .+.+
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 6788765 55555677999986544555544442 22 4466788888888777766332 2 2223
Q ss_pred cHHHHHHHHHhhccCC----ChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHH---
Q 007424 79 YITKIINSITRNFRDK----NSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATI--- 149 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDp----Ds~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalI--- 149 (604)
-..-....|..-|..| .+.++.++.+=+-.+=.++ ++++. +++-|+..| .-....+-..||.|++++.
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--~~~~lm~~~p~li~~L-~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--GKEHLMALLPRLIRFL-EAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC--ChHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHhccccc
Confidence 2333333444444443 3567766665554444444 34444 555555555 4456789999999998875
Q ss_pred hhc------CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcC-----CcHH
Q 007424 150 DAA------QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSS-----QDWA 217 (604)
Q Consensus 150 E~a------~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s-----~Dw~ 217 (604)
|+. ...+.+++..++..|++.++.+.-.=-..+.-||--++.+.. +..|+++.+++.|.+++.. .+-.
T Consensus 530 e~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 530 ENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred cCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 331 223457888899999999988754323556778877777554 4459999999999999842 2222
Q ss_pred HHHHHHHHHHHHHHHcC
Q 007424 218 ARKAAAEALWRLAVVEK 234 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~g 234 (604)
-=---.|++|.+-+..+
T Consensus 610 fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTC 626 (960)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 23345777777766443
No 120
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.99 E-value=2 Score=41.60 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh----HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF----VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~----~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
...+++++.-|...|+++++.-|-+.+.-++.+.++..-.-+ ..++.-|+..|-....+.+-..|+.+|..+.+.+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999988888621112 1266666666643345567889999999999886
Q ss_pred CCCC-------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhh
Q 007424 153 QDPD-------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 153 ~d~i-------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L 211 (604)
...+ .+.++++.+-++++++. ..+...++.++..+.. -...|.||...+-..+.++|
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 4322 46788899999999975 3456788889998886 44667799888777776655
No 121
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.84 E-value=6.7 Score=40.02 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=111.3
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhc
Q 007424 13 LNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
+.|-.|.......++.|-.++.+=. ..+++++..|..-...++...+--+++++..+-..- -.-|+|.+++.....+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 5555555566666666666666544 447888888766555544444556778888886655 33389998888755442
Q ss_pred c----CCCh--hHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 007424 92 R----DKNS--ALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (604)
Q Consensus 92 k----DpDs--~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L 163 (604)
. +.+. .+.-+++.++..++....+ +. ++++|...|.++.+..++.-|.-+|+.++++.--++.....-|
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl 164 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVL 164 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2 2222 2344555566666665432 33 7777777773455666776666677777865322222233334
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHh--cCcCc--C---CchHHHHHHHHhhhcCCc-------HHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIG--SGAVD--G---SGLKGLVSCLLGFLSSQD-------WAARKAAAEA 225 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~--ag~~f--~---pyf~~lm~~L~e~L~s~D-------w~lRkaAaDa 225 (604)
.+++ . ..-++.++..+.++.. ..+.+ . -....++..+-++....+ ..+|.+|.++
T Consensus 165 ~~~l----~---~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 165 QKKL----S---LDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred HHhc----C---CccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence 4433 2 2234555555555443 11222 2 223345556656655554 3456655554
No 122
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=2.3 Score=50.44 Aligned_cols=202 Identities=16% Similarity=0.103 Sum_probs=130.2
Q ss_pred hHHHHHhhhhcCCC--------CCCchhHHHH-HHHHHHHhhh-ccccc----HHHHHHHHHhhccCCC-h-hHHHHHHH
Q 007424 41 LPTFLSCILSTNSS--------DKPGVRKECI-HVIATLSNSH-NLSPY----ITKIINSITRNFRDKN-S-ALQATCIS 104 (604)
Q Consensus 41 ip~fL~~L~e~~ss--------~kp~~RKaaI-~lLGvLae~h-~i~p~----L~kIl~~IvrrLkDpD-s-~VR~Ac~~ 104 (604)
+|+++..|....+- .+...+|.|| -++|..+-.- .+.++ ...++|-+. .|.+ . .+|+=.++
T Consensus 433 vP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~---~~~~~~RiiRRRVa~ 509 (978)
T KOG1993|consen 433 VPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA---NDHGNSRIIRRRVAW 509 (978)
T ss_pred hHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh---hcccchhHHHHHHHH
Confidence 67888887444222 2345666665 7788775544 33333 222233222 2222 2 35666666
Q ss_pred HHHhhhhhhccch-hHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHhcCC-chhH
Q 007424 105 TVSSLSPRVGASA-FVTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAA---QDPDAGKLGRMEVRLERLLKSE-VFKA 178 (604)
Q Consensus 105 aLg~LAe~l~d~~-~~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a---~d~i~~yL~~L~~RL~klL~s~-~~ka 178 (604)
-+|+-...=.... ...+..-++..| .++ |..|..+++..|..+||-. .+...+|++.+-.-++++|+.- .+..
T Consensus 510 ilg~Wvsvq~~~e~k~l~Y~a~lnLL-~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dt 588 (978)
T KOG1993|consen 510 ILGQWVSVQQKLELKPLLYCAFLNLL-QDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDT 588 (978)
T ss_pred HHhhhhheechHhHHHHHHHHHHHhc-CccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 6666554211111 111222233333 555 8889999999999999874 4556789988888888888655 6778
Q ss_pred HHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcC---cchhhhhhHHHH
Q 007424 179 KAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLK 246 (604)
Q Consensus 179 K~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~--s~Dw~lRkaAaDaLg~LA~~~g---e~f~py~~~~i~ 246 (604)
|..+++.++.++. ++.-..||...+++.|...|. .++--+|-+-+-+|--+..+.| ..+.|+.=.+|+
T Consensus 589 k~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 589 KTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 9999999999885 776666999888888888874 3566778888888888888887 466666544444
No 123
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=93.75 E-value=0.43 Score=43.14 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 159 KLGRMEVRLERLLKS----EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 159 yL~~L~~RL~klL~s----~~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
++--++.++-..+.+ .+..-|..++.+|+.++..++.. .++.+++|.+|+..|..+ ++|..|+++...+...+
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence 444466677766666 47778889999999999866554 488888999999988776 89999999999999988
Q ss_pred C-cchhhhhhHHHHHH
Q 007424 234 K-DAVPEFKGKCLKIF 248 (604)
Q Consensus 234 g-e~f~py~~~~i~~L 248 (604)
. +.+.|+.++++-++
T Consensus 86 ~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAIL 101 (107)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7 78888888877665
No 124
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.72 E-value=1.7 Score=49.66 Aligned_cols=183 Identities=12% Similarity=0.108 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----------------cccccHH
Q 007424 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------------NLSPYIT 81 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----------------~i~p~L~ 81 (604)
+-.-|.+.|-.++..+ -|.. |..|+..+........+..|..|++.+|.++..+ ....+++
T Consensus 410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 410 TDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp -HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 4455667777777776 4544 5555555532222335678999999999985544 2223555
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e--qdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
.+...+.......|...+.+++.|||.+...- .++.|...+.++ ....++..|..||.++.+. +
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-------~ 555 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-------C 555 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCCch-------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-------C
Confidence 55555555666777788999999999997542 344444444333 3556777888888766442 2
Q ss_pred HHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHH
Q 007424 160 LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEA 225 (604)
Q Consensus 160 L~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDa 225 (604)
-.++-+-|+.++.+. +..+|-|++.+|- .. .|-. ..+..|..+|. +.+-+++....-.
T Consensus 556 ~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm---~~----~P~~-~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 556 PEKVREILLPIFMNTTEDPEVRIAAYLILM---RC----NPSP-SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---HT-------H-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCChhHHHHHHHHHH---hc----CCCH-HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 235566677777655 5667765544333 21 1222 35555666664 4567776655433
No 125
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.70 E-value=3.3 Score=47.41 Aligned_cols=188 Identities=18% Similarity=0.134 Sum_probs=100.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHH
Q 007424 26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST 105 (604)
Q Consensus 26 ~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~a 105 (604)
+-.|-.+.+.|+.++|..+...+.... .+...|+--+-+|+.+..... +. +|...|...+-.--. +...
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a----v~----~i~~~I~~~~~~~~e-a~~~ 417 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA----VK----FIKDLIKSKKLTDDE-AAQL 417 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH----HH----HHHHHHHTT-S-HHH-HHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH----HH----HHHHHHHcCCCCHHH-HHHH
Confidence 666777777777777777777775432 345677777777777755431 11 222222222221111 2234
Q ss_pred HHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC-C------------C-ChhhHHHHHHHHH
Q 007424 106 VSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ-D------------P-DAGKLGRMEVRLE 168 (604)
Q Consensus 106 Lg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~-d------------~-i~~yL~~L~~RL~ 168 (604)
+..|...... |-..++.-+++.+. ...++.+...|.+++..++-... . . ...|++.|...+.
T Consensus 418 l~~l~~~~~~-Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 418 LASLPFHVRR-PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHhhcCC-CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 4444444322 22234444444442 13456677888888888876631 1 1 1245566666666
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcC
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~---Dw~lRkaAaDaLg~LA~~~g 234 (604)
...+..+...+-..|-||| .+|- +.+++.|..++.+. .-.+|.+|+.+|..++....
T Consensus 497 ~~~~~~~~~~~~~~LkaLg---N~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALG---NLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHH---HHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHhhccCHHHHHHHHHHhh---ccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 6666767777888888888 3331 24566666666554 57777777777776654433
No 126
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=11 Score=45.30 Aligned_cols=252 Identities=14% Similarity=0.188 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 18 DRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L--~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
..+..+.+.+.+..++.-| .|-.+++.|+.|-+... ++..-.+++.-+-.+|+.| -+.||+..+++++..-+.-
T Consensus 522 n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~ 599 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK 599 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc
Confidence 7789999999999999887 34457777888777654 3345557777889999999 8999999999999888865
Q ss_pred CC--hhHHHHHHHHHHhhhhhhccch-----hHHHHHHHHHHHccC-----CCh------hHHHHHHHHHHHHHhhcCC-
Q 007424 94 KN--SALQATCISTVSSLSPRVGASA-----FVTMLKLLSDALFTE-----QDT------NAQVGAALCLAATIDAAQD- 154 (604)
Q Consensus 94 pD--s~VR~Ac~~aLg~LAe~l~d~~-----~~sllkPL~eaL~~e-----qdk------~vQ~~AA~cLaalIE~a~d- 154 (604)
.. .++|-....++|-+-..+- ++ .+.++.|++..|-.. +++ +.|..+..+|..-..+-.+
T Consensus 600 ~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 600 SNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred cccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44 3578888888888777663 11 223777887777311 122 2344455555333322111
Q ss_pred ----------------CChhhHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcC-----cCcC-CchHHHHHHHHhhh
Q 007424 155 ----------------PDAGKLGRMEVRLERLLKSEVFKAK-AAGLVVVGSVIGSG-----AVDG-SGLKGLVSCLLGFL 211 (604)
Q Consensus 155 ----------------~i~~yL~~L~~RL~klL~s~~~kaK-~alLsaIGSiA~ag-----~~f~-pyf~~lm~~L~e~L 211 (604)
+++..+.++|+=+-+.++. -++ ...++++.++...| ..|. |+++.+++.+..|+
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~---~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM---WLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 2234456666666666641 122 33555555554433 2342 55556666665555
Q ss_pred cCCcHHHHHHHHHHHHHHHHH----------cCcchhhhhhHHHHHHHhccC-cchhHHHHHHHHHHHHHHhCCCCCCC
Q 007424 212 SSQDWAARKAAAEALWRLAVV----------EKDAVPEFKGKCLKIFESKRF-DKVKVVREVMNKMIEAWKQVPDLSEE 279 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~----------~ge~f~py~~~~i~~Le~cRf-DKvK~VRda~~~AL~~wK~i~~~~~~ 279 (604)
+...-. +++....++.+ ++..|.......+.++|.-=| +-+-.+-.-+----+.||.+|+..++
T Consensus 756 ~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 756 TSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred cchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence 443222 22222222221 112445555788888887763 33333444444444789999977544
No 127
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.09 E-value=1.2 Score=50.17 Aligned_cols=232 Identities=17% Similarity=0.108 Sum_probs=137.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-----
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG----- 114 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~----- 114 (604)
....+.|+.... ..+++|-+|+..|-.++... ...-|+-++.-.|...+-|+++.+..=++.-|-.+...++
T Consensus 255 ~~~~~~~~~~~~--~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P 332 (728)
T KOG4535|consen 255 GSDAGSAAGSTY--EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKP 332 (728)
T ss_pred hhhHHhhhcCcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCC
Confidence 455666765432 24589999999999999977 8888999999999999999999886555544444444443
Q ss_pred c--------chhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHH-HHHhcCCchhHHHHHH
Q 007424 115 A--------SAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL-ERLLKSEVFKAKAAGL 183 (604)
Q Consensus 115 d--------~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL-~klL~s~~~kaK~alL 183 (604)
+ .+|-. +.+|+-.++.+...+..+.++|.++-.+.-..-+....--+..++-+ ..+=++.+.-+|.+++
T Consensus 333 ~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~ 412 (728)
T KOG4535|consen 333 DSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAAS 412 (728)
T ss_pred CcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHH
Confidence 1 12322 34466565544445567888888886665443222111112233222 2222444445666665
Q ss_pred HHHHHHH-hcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc--C-cchhhhh--------hHHHHHHHh
Q 007424 184 VVVGSVI-GSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE--K-DAVPEFK--------GKCLKIFES 250 (604)
Q Consensus 184 saIGSiA-~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~--g-e~f~py~--------~~~i~~Le~ 250 (604)
.+.+-.+ +-+-.- ..+...+-..+...|.+....+|.-|+-++|-|..++ | .....+. ..-+..-..
T Consensus 413 Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~ 492 (728)
T KOG4535|consen 413 RALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIE 492 (728)
T ss_pred hhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5554322 112111 1233334444444455567888999999999987744 3 2311132 233344445
Q ss_pred ccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 251 KRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 251 cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
|--||-| ||+-+.+||...-+|-+
T Consensus 493 ~~Ad~dk-V~~navraLgnllQvlq 516 (728)
T KOG4535|consen 493 ASADKDK-VKSNAVRALGNLLQFLQ 516 (728)
T ss_pred hhhhhhh-hhhHHHHHHhhHHHHHH
Confidence 5556654 78888999887777664
No 128
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.95 E-value=1.2 Score=43.07 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCCh
Q 007424 81 TKIINSITRNFRDKN-SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDA 157 (604)
Q Consensus 81 ~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i~ 157 (604)
|.++..+.+-|+-.. ..+|..+.+++|.|+.-= +-. .+-....+ .+...+.....+-+...-. ......
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD--P~~---~k~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALD--PYK---HKSIQKSL---DSKSSENSNDESTDISLPMMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC--cHH---HhcccccC---CccccccccccchhhHHhhccCCCchH
Confidence 677777777777654 689999999999997541 111 11000000 0000111112222222221 111234
Q ss_pred hhHHH-HHHHHHHHhcCCchh-HHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 158 GKLGR-MEVRLERLLKSEVFK-AKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 158 ~yL~~-L~~RL~klL~s~~~k-aK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+|.+. .+..|.+.|+.++.. -+.+++.+|-.|.. .|-...||++.+||.+...+..-+-.+|..-..-|+.|..+++
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk 160 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 56555 677788999888543 33578888888775 4444469999999999999985444999998888888877653
No 129
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.90 E-value=1.4 Score=50.31 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHh
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~--------~~kaK~alLsaIGSiA~ 191 (604)
.|++-+++++.+ ++......|-.+|+. + +-|+.|+|++...+... ++..=..++..+.|+..
T Consensus 207 lYy~~It~a~~g-~~~~~r~eAL~sL~T-----D----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 207 LYYKEITEACTG-SDEPLRQEALQSLET-----D----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhhcc-----C----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 388888888865 343333334333321 1 34566666666665322 23333445556666665
Q ss_pred cCcCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCc
Q 007424 192 SGAVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 192 ag~~f~-pyf~~lm~~L~e~L~----------s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfD 254 (604)
=-..|. ||+-.+||.+.-|+. ++.|++|..|+..|..|....++.....+.++++.|..-=.|
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 455665 999999999999984 356999999999999999988866555666666666533333
No 130
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.73 E-value=0.11 Score=39.41 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHH
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTV 106 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aL 106 (604)
-+.|+..|.++|.|+++.||+||++.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 358999999999999999999999764
No 131
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.52 E-value=1.6 Score=50.99 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHH-ccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDAL-FTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL-~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
...+|+|.|.+.++|.+..++..|+..++.+++.+. .++.. .+-|.+..| +.+.+..++..+..|++.+++.++.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~-- 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK-- 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH--
Confidence 368899999999999999999999999999999974 33333 455555544 3456778999999999999988753
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh--cCc-CcCCchHHHHHHHHhhhcC
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG--SGA-VDGSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~--ag~-~f~pyf~~lm~~L~e~L~s 213 (604)
...-..++.+++..+..+..++-..+.++-.++- -++ .+. ...++|.+......
T Consensus 463 -~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~--~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 463 -AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM--AENVLPLLIPLSVA 519 (700)
T ss_pred -HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee--hhhhhhhhhhhhhc
Confidence 1122233445666666665555554444444332 122 222 23566666554443
No 132
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.43 E-value=1.3 Score=46.78 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhcCC--------------CChHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 007424 5 LKTSVNGLLNKL-SDRDTYSQAAKELDSIAATVDP--------------TLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 5 Lk~rvl~~L~KL-sDrDT~r~A~~eLD~lA~~L~p--------------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv 69 (604)
...-++..|+++ ++.||.+..+..++-|...-|. +-+.+|+. ...+++++....+..+|+.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~----ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK----LLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH----H-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 344567888899 8999999999999888776541 11344444 3445688999999999999
Q ss_pred HHhhh---cc---cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cchh--HHHHHHHHHHH------ccCCC
Q 007424 70 LSNSH---NL---SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAF--VTMLKLLSDAL------FTEQD 134 (604)
Q Consensus 70 Lae~h---~i---~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~~~--~sllkPL~eaL------~~eqd 134 (604)
+.... .- ...|+.++..+...++.++..++..|+.+++.|...=. +..+ ...+++|+..| -+..+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 86655 11 24577777777777766777888999999988864311 0111 22777777766 12234
Q ss_pred hhHHHHHHHHH------HHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 135 TNAQVGAALCL------AATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 135 k~vQ~~AA~cL------aalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
...|-.+..|+ ..+++.+.. .+ +++.|.++++..
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~~~~~~~~~---~~---~i~~L~~i~~~~ 251 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEPEIAEELNK---KY---LIPLLADILKDS 251 (312)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHT---TS---HHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHhc---cc---hHHHHHHHHHhc
Confidence 44667888888 334443321 22 666777776544
No 133
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=16 Score=43.67 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
..++|..-|..+..+|..+. ...+++-++.|+.+.|...=.+|+.+||.-|...+..-..-.+..+..|++.
T Consensus 370 p~~vk~lKleiLs~La~esn-----i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh 441 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESN-----ISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH 441 (968)
T ss_pred HHHHHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc
Confidence 33444444444444443322 2345666677777777766667777777777755543332233334455544
No 134
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=5.2 Score=47.25 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=120.2
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHH-HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKI-INSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kI-l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~ 119 (604)
||-++.|.. ..+-..+|=+.+-+..-+.++ |.+..+ +.++++-..|+++.+|.-|..++|.+--.- -..
T Consensus 51 F~dvvk~~~----T~dlelKKlvyLYl~nYa~~~---P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---i~e 120 (734)
T KOG1061|consen 51 FPDVVKCMQ----TRDLELKKLVYLYLMNYAKGK---PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---ITE 120 (734)
T ss_pred hHHHHhhcc----cCCchHHHHHHHHHHHhhccC---chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH---HHH
Confidence 455555543 556778888888777777776 444433 568899999999999999999988875432 122
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcC-
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDG- 197 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~- 197 (604)
-++.||...+ .+.++.++..|+.|.+++-.--.+ ...-.-+++.|-.++.+++..+-+.++.++..|..... ...
T Consensus 121 y~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 121 YLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3899999999 678899999999999998764221 11123377778888887777777777777777765332 111
Q ss_pred CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC
Q 007424 198 SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 198 pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
-.-..++..+.+.|. .++|. -+..|..++....
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWG----QIFILDCLAEYVP 231 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCC
Confidence 111234455555554 36888 4778888887665
No 135
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=7.4 Score=46.41 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=135.8
Q ss_pred hHHHHHHHHHhhhc-CCh-h--HHHHHHHHHHHHHhhc--CCCChHHHHHhhhh-------cCCCCCCchhHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKL-SDR-D--TYSQAAKELDSIAATV--DPTLLPTFLSCILS-------TNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 3 ~eLk~rvl~~L~KL-sDr-D--T~r~A~~eLD~lA~~L--~pe~ip~fL~~L~e-------~~ss~kp~~RKaaI~lLGv 69 (604)
.|+|-.+..++.+| .|. | +.-.+++.|..++.+. .+++|-+++..+-. ..+. -..|-..+.+|+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 46777777766666 565 3 6677888899888864 56666555443322 2222 2467788888888
Q ss_pred HHhhh--cccccHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHccCCChhHH--HHH
Q 007424 70 LSNSH--NLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQ--VGA 141 (604)
Q Consensus 70 Lae~h--~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~--~~sllkPL~eaL~~eqdk~vQ--~~A 141 (604)
+.+-. .|+||..+|++++-..-+. .++.+|-|.+.+|.+|..-+..++ +..|+-|.++.=.+-+.|.++ ..=
T Consensus 599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 86655 8889999998887765544 556799999999999999997754 555888988876443444433 222
Q ss_pred HHHH-HHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHHHHHHHhhhc
Q 007424 142 ALCL-AATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGLVSCLLGFLS 212 (604)
Q Consensus 142 A~cL-aalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~lm~~L~e~L~ 212 (604)
++.| ..++++. ..+.|-|-.|+|-+.-.++...-.. +.++..|-|-+- -+.+|. -|+..+...+.++|.
T Consensus 679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5556665 3344666678888887776543332 345556665553 345565 777777777777774
No 136
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=13 Score=40.62 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHc-C-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 213 SQDWAARKAAAEALWRLAVVE-K-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~-g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
..|-..-.+|+|+||-|+... | +.+.---...-+-+=.+-||.-++-.. .-||..+-.|.+.
T Consensus 315 mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakq--eaaihaLaaIage 378 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQ--EAAIHALAAIAGE 378 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchH--HHHHHHHHHhhcc
Confidence 357788899999999999844 4 443311111222233455677776543 2244444445543
No 137
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=9.2 Score=46.05 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC----CCCCC-chhHHHHHHHHHHHhhh--cccccHHHHHHHHHh-hc
Q 007424 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTN----SSDKP-GVRKECIHVIATLSNSH--NLSPYITKIINSITR-NF 91 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~----ss~kp-~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivr-rL 91 (604)
.+|-+..++-...=++-.+. +..+..-|.+.. .++.. ..=.+|+-.+-.+++-. --.+.+++++..+-+ .+
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 45555555544333333344 444444444442 23333 33455566666666644 667788888776543 34
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
.-+++.+-..|.+.+|.++.|+.+.|+.. .++-|+.+| +..+-.+| |..-|.+++|.....+.+|...++.-...
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 45688899999999999999998877554 677777777 32222344 33449999999988888998887777777
Q ss_pred HhcCCchh--HHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHh
Q 007424 170 LLKSEVFK--AKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLG 209 (604)
Q Consensus 170 lL~s~~~k--aK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e 209 (604)
.+...+.+ .+..++.+||=+.+.- ++..-|+..++..+.+
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ 639 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILS 639 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHH
Confidence 77554322 3455777777666521 2223455554444433
No 138
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.81 E-value=0.79 Score=41.77 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~----~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
+++=-++.++...+++.+ +.-|...+.+|+-++..+ +....+.++++.+|+..|..++ +|..|++++..+...
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~ 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence 455557778887776664 345788899999999844 4445888899999999997665 999999999999998
Q ss_pred cC-cchhhhhhHHHHHHH
Q 007424 233 EK-DAVPEFKGKCLKIFE 249 (604)
Q Consensus 233 ~g-e~f~py~~~~i~~Le 249 (604)
+. +.+.|..++++-++-
T Consensus 85 L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 85 LKEEELGPLLDQIFAAIL 102 (107)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 87 788888888776654
No 139
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=6.3 Score=44.68 Aligned_cols=225 Identities=17% Similarity=0.139 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhc-CCCCCCchhHHHHHHHHHHHhhh---
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSH--- 74 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~-~ss~kp~~RKaaI~lLGvLae~h--- 74 (604)
.|+.-++...+|..|.+ .++.|+.-|-.+|.-.|.+. .+.++..|.-. ....+..+-=+++.+|..+.+-.
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 46666777788888887 56677777777777655333 23333333111 12223577888888888886665
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---hHH----HHHHHHHHHccCCChhHH-HHHHHHHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT----MLKLLSDALFTEQDTNAQ-VGAALCLA 146 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~---~~s----llkPL~eaL~~eqdk~vQ-~~AA~cLa 146 (604)
.+.+|+-.|-=.+...+.|-++.+|-|+-..+|+|+.....+- |.. -+.||+..| +|++.+ ..||....
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl---~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL---QDPNPYVARACRSEL 411 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee---CCCChHHHHHHHHHH
Confidence 7778888887777888888889999999999999999987532 222 244666666 455444 34455444
Q ss_pred HHH-hhcC-CCChhhHH----HHHHHHHHHhcC-------Cch-------------------hHHHHHHHHHHHHH-hcC
Q 007424 147 ATI-DAAQ-DPDAGKLG----RMEVRLERLLKS-------EVF-------------------KAKAAGLVVVGSVI-GSG 193 (604)
Q Consensus 147 alI-E~a~-d~i~~yL~----~L~~RL~klL~s-------~~~-------------------kaK~alLsaIGSiA-~ag 193 (604)
.++ +++. +....|++ ..++++.+..++ -++ .++.++...-+... +..
T Consensus 412 ~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 412 RTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 432 3321 11112333 234333333322 111 22333222222111 111
Q ss_pred cCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 194 AVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 194 ~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.+.- -....+...|+.++.+.--++++.|..+++.+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 1111 1224566777778888888899999999887653
No 140
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.74 E-value=19 Score=41.06 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHH
Q 007424 24 QAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCI 103 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~ 103 (604)
..+-.|-.+.+.++.++|..+...+.. .. ...|+--+-+|+.+.... -+. +|.+.++..+-.-. -+.
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~----a~~----~i~~~i~~~~~~~~-ea~ 377 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPP----ALK----FIKQWIKNKKITPL-EAA 377 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHH----HHH----HHHHHHHcCCCCHH-HHH
Confidence 344456666777788888887777754 21 456666667766665433 222 22223333322111 122
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcC--CC------ChhhHHHHHHHHHHHhc
Q 007424 104 STVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQ--DP------DAGKLGRMEVRLERLLK 172 (604)
Q Consensus 104 ~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~--d~------i~~yL~~L~~RL~klL~ 172 (604)
..+..+...+.. |-..++.-+++.+.. ...+.+..+|.++++.++.... .. ..+|++.|...|.++.+
T Consensus 378 ~~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~ 456 (574)
T smart00638 378 QLLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS 456 (574)
T ss_pred HHHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh
Confidence 233333333321 222355555555532 2355677888888888887431 11 12456666666666665
Q ss_pred CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-C--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-S--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 173 s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
..+..-+...|-+|| .+|- +..++.|..++. + -.-.+|.+|+.+|..+|....+.+.+. .+.++.
T Consensus 457 ~~~~~~~~~~LkaLG---N~g~------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~i~~ 524 (574)
T smart00638 457 KGDEEEIQLYLKALG---NAGH------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLPIYL 524 (574)
T ss_pred cCCchheeeHHHhhh---ccCC------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHc
Confidence 556555666777777 4442 244555666664 2 356799999999999987666555543 456665
Q ss_pred hccCcchhHHHHHHHHHH
Q 007424 250 SKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL 267 (604)
+-. .-..||=+|.-+|
T Consensus 525 n~~--e~~EvRiaA~~~l 540 (574)
T smart00638 525 NRA--EPPEVRMAAVLVL 540 (574)
T ss_pred CCC--CChHHHHHHHHHH
Confidence 443 3456787766554
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=91.71 E-value=1.6 Score=53.86 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhhhhhccc---hhHHHHHHHHHHHccCCChh----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 99 QATCISTVSSLSPRVGAS---AFVTMLKLLSDALFTEQDTN----AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~---~~~sllkPL~eaL~~eqdk~----vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
|.-|--+|-.|+.+.... ....+..=|+++|.++-+-+ --......++... ++...+ +..+.|+|+.++
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m---~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLM---HSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhh---hhhhhh-hhhhhhHHHHhc
Confidence 777888888888887421 01112222333332211111 0111222222222 222223 667889999999
Q ss_pred cCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH-HHHHcCcchhhhhhHHHHHHH
Q 007424 172 KSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR-LAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 172 ~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~-LA~~~ge~f~py~~~~i~~Le 249 (604)
.+.+..+|.++..|||-.+.++ .+.. ..++..+...+.+.+--.|+++++.+.. +.....-.+-||..-.+..|=
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m---~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETM---ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 9999999999999999887643 3322 2233333444444454555555555544 444445677778777777777
Q ss_pred hccCcchhHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 007424 250 SKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPP 283 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~~p 283 (604)
.|=.|-+-.||+++.++.-...-+.+...+.++|
T Consensus 903 r~msd~~d~vR~aat~~fa~lip~~~le~g~~~p 936 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDP 936 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhcccccccCCCCC
Confidence 7888999999999999999998877775555544
No 142
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.61 E-value=3.2 Score=52.17 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh
Q 007424 99 QATCISTVSSLSPRVG-ASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~-d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
++++.+.+-.++.+-. -+.|..||+-++..| +++...+...|--||..++|.- +.+=..+.+-..+-.-|...+..
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l-~e~~ialRtkAlKclS~ive~D--p~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVL-GENAIALRTKALKCLSMIVEAD--PSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcC--hHhhcCHHHHHHHHHhhccchhH
Confidence 4555554444444321 034555888888888 7888889999999999999953 22223355555666777788899
Q ss_pred HHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc--chhhhhhHHHHHHHhccCc
Q 007424 178 AKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--AVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 178 aK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--~f~py~~~~i~~Le~cRfD 254 (604)
+|.|++.+||-.+.+-.+. ..|++ +|.+-+.++.-.+||-|+-.|-.|....++ .+.......|.-.+ |
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~----D 942 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVN----D 942 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc----c
Confidence 9999999999766543332 24554 455555668899999999999999987763 44444444444444 6
Q ss_pred chhHHHHHHHHHHH-HH
Q 007424 255 KVKVVREVMNKMIE-AW 270 (604)
Q Consensus 255 KvK~VRda~~~AL~-~w 270 (604)
---.|-+-|.+.+. +|
T Consensus 943 EEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 943 EEGNIKKLVRETFLKLW 959 (1692)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 66667777777654 45
No 143
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=1.4 Score=52.05 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|..+|.+-|+-++..|--.|+-|+|+|+.. ++.--|-|.++-|+..+++.+...|++|+.++|.-.++ .+.-
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~----l~e~ 179 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD----LVEH 179 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch----HHHH
Confidence 556888999999999999999999999753 22236778888887889999999999999999997764 3444
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L 211 (604)
+.+...++|...+.-+=.+.+..+..+...+.+...||..+++.+...|
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5666777776665444344444444444444444456666666665555
No 144
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=5.4 Score=47.16 Aligned_cols=92 Identities=17% Similarity=0.073 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhh
Q 007424 161 GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE 239 (604)
Q Consensus 161 ~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~p 239 (604)
+..||+++.+|... ++++|-.+.-|+| |+.+|.. ....+..|.+...+..--+|..|+-+++-|..-.-+..-|
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALG-IaCAGtG----~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALG-IACAGTG----LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHh-hhhcCCC----cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 77999999999766 8899988888888 5566643 2456666666666778889999999999998866554444
Q ss_pred hhhHHHHHHHhccCcchh
Q 007424 240 FKGKCLKIFESKRFDKVK 257 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK 257 (604)
--..+.+.|+.-=-||-.
T Consensus 662 kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hHHHHHHHHHHHhhhhhh
Confidence 434445555443336543
No 145
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=16 Score=43.29 Aligned_cols=118 Identities=10% Similarity=0.140 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh---------cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAAT---------VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLS 71 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~---------L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa 71 (604)
+.|..+++.-|+.|=.. -.|+..|-..+.+ +|.+. +..-++-|.....++++..|-=++++|+-++
T Consensus 251 PRLgKKLieplt~li~s---T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMES---TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred chhhhhhhhHHHHHHHh---hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 34556666666665332 2344445443333 22222 4444455566677888899999999999999
Q ss_pred hhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 72 NSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 72 e~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
-.| ++.-|.+ .|++-|.|-|.++|-=|++=|-.|... .....+++-|+..+.
T Consensus 328 ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVsk---kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 328 KTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVSK---KNLMEIVKTLMKHVE 381 (877)
T ss_pred hhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Confidence 999 8888877 677889999999998887776666544 445558888888874
No 146
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.22 E-value=13 Score=39.50 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=83.3
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHH-HHHHHHHHHc---cCCChhHH---HHHHHHHH
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVT-MLKLLSDALF---TEQDTNAQ---VGAALCLA 146 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~s-llkPL~eaL~---~eqdk~vQ---~~AA~cLa 146 (604)
..--++++..+.++|+|..+.||.+-...+|.+...... ..+.. |+++|++.+- ...-+.+| ..+|+|+.
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 455688899999999999999999999999998751100 12222 6777776662 12223333 34455554
Q ss_pred HHHhhcCCC--------------ChhhHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-cCcCcCCc-hHHHHHHHHh
Q 007424 147 ATIDAAQDP--------------DAGKLGRMEVRLERLLKS-EVFKAKAAGLVVVGSVIG-SGAVDGSG-LKGLVSCLLG 209 (604)
Q Consensus 147 alIE~a~d~--------------i~~yL~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~-ag~~f~py-f~~lm~~L~e 209 (604)
.+.....+. ..+- --+-+|++..|.+ +... -++.++-+++. ......+. ....-..+.-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~kps-~ll~~kvyskl~~~~d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 ALSSWKLDKIDSKNISFWSLALDPKPS-FLLSEKVYSKLASEEDLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred HhccccchhhhhhhhhhhhhccCCCcc-hhcCHHHHhccCCHhHHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 411100000 0000 0123355544322 2322 23333333331 11111111 1233455555
Q ss_pred hhcCC--cHHHHHHHHHHHHHHHHHcCcc
Q 007424 210 FLSSQ--DWAARKAAAEALWRLAVVEKDA 236 (604)
Q Consensus 210 ~L~s~--Dw~lRkaAaDaLg~LA~~~ge~ 236 (604)
++.+. .|.+|+.|.++|..+....+..
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 56666 8999999999999987765543
No 147
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.07 E-value=9.8 Score=43.98 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD 93 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD 93 (604)
++.-+-++|++-|-.+..+.|.=+ |..+|.++. .++..+|+.||+.|-.+|... ..|++||.-++++.|+-
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE----Ded~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE----DEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQT 107 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-----SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhc
Confidence 677789999999999999887433 666666655 456789999999999998865 45899999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
.|+..+.++-.+|-.|-..=.+ ..|..||..+.
T Consensus 108 dd~~E~~~v~~sL~~ll~~d~k----~tL~~lf~~i~ 140 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLLKQDPK----GTLTGLFSQIE 140 (556)
T ss_dssp --HHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHH
Confidence 9999999999998777555321 25666666664
No 148
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.01 E-value=20 Score=46.89 Aligned_cols=124 Identities=10% Similarity=0.152 Sum_probs=86.4
Q ss_pred HHHHHHh---hcCCCChHHHHHhhhhcCCCC---CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHh----hccCCC
Q 007424 28 ELDSIAA---TVDPTLLPTFLSCILSTNSSD---KPGVRKECIHVIATLSNSH--NLSPYITKIINSITR----NFRDKN 95 (604)
Q Consensus 28 eLD~lA~---~L~pe~ip~fL~~L~e~~ss~---kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivr----rLkDpD 95 (604)
.+|.+-. .|+.+.|..|+.+|.+-.... ...-|-.++..|..++..- -+.-.+.+||.++.. --..++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 4455433 578888999999987542111 1245888888887776655 333356676665543 334556
Q ss_pred hhHHHHHHHHHHhhhhhhccch------hH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 96 SALQATCISTVSSLSPRVGASA------FV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~------~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
..|+--|++.|.+++-...+.. |. .||+|+...|-...+..++....-|+..+|++
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 7799999999999998876532 22 39999998886556777888999999888876
No 149
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=10 Score=48.17 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCchhHHHHHHHHH---HHhhh--cccccHHHHHHHHHhh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIAT---LSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss-----~kp~~RKaaI~lLGv---Lae~h--~i~p~L~kIl~~Ivrr 90 (604)
..++...-.-.++..|.-..|.|++.-+.+-..+ .....+.-.|..|+. +++.+ .+.||...++-..+-.
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5667777777888888877774444444332221 111223333444443 37777 7788877777655544
Q ss_pred ccCCCh------------hHHHHHHHHHHhhhhhhcc--------------chhHHHHHHHHHHHcc---C--CChhHHH
Q 007424 91 FRDKNS------------ALQATCISTVSSLSPRVGA--------------SAFVTMLKLLSDALFT---E--QDTNAQV 139 (604)
Q Consensus 91 LkDpDs------------~VR~Ac~~aLg~LAe~l~d--------------~~~~sllkPL~eaL~~---e--qdk~vQ~ 139 (604)
|+--+. ..| -+..+|+|+-.+.. ..+..+..|+...|.. + ....+-.
T Consensus 1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence 443332 234 33344444433321 2233467788777753 1 1122333
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
..+.|++.+--..++. +++|..++++...+.+.++|-.+|-.+--++.--+++ .+.+++++|.|.+.+.++|-++
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4444444433333332 7888888888888888899988888888777644444 4888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcchhhh
Q 007424 219 RKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ge~f~py 240 (604)
--.+.+.+..+=...||.|..|
T Consensus 1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHhchhhhhc
Confidence 8888888888888999987766
No 150
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=5.8 Score=47.57 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=88.6
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHH-HHh-------hcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--c
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDS-IAA-------TVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~-lA~-------~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~ 75 (604)
+++|+-|.-=+|.-.+--|+.||=. |.. .+|-++ +|.++..|... .++..--.|.++|..||+.+ .
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccch
Confidence 3455555554555555556666532 221 246666 46666666432 23566778889999999888 1
Q ss_pred ccccHH-HHHHHHHhhccCCC----------------------------------------hhHHHHHHHHHHhhhhhhc
Q 007424 76 LSPYIT-KIINSITRNFRDKN----------------------------------------SALQATCISTVSSLSPRVG 114 (604)
Q Consensus 76 i~p~L~-kIl~~IvrrLkDpD----------------------------------------s~VR~Ac~~aLg~LAe~l~ 114 (604)
++--+. --||+++.+|.--. ..++++|.-+++.++..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111111 13445555544332 1233333333333333332
Q ss_pred cchhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC--hhhH--HHHHHHHHHHhc
Q 007424 115 ASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLK 172 (604)
Q Consensus 115 d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i--~~yL--~~L~~RL~klL~ 172 (604)
-..|+ .=..||+..|+..+++..-..+|.|+.+++|++...+ .+.| +.|+.+...||.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 11222 2345677777778898999999999999999964322 1211 235556666654
No 151
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=3.3 Score=44.45 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=103.6
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
..-+....+.|.+.|..+---.+..+.+|+++=.+ .-++.++.-+...+ ......|..+||+|++.+.++.++-+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666655555556666666666322 11222333333333 233446888999999999999876554
Q ss_pred hhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 158 GKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 158 ~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
..+..++-.|+.-= .++.| ++..+.-|+-+... +-. ..+++.|+.++....-.+|.-++-+....---.|
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrF-vreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRF-VREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 43333222222111 12223 34444445554442 322 2467777777776666666666655544333232
Q ss_pred -cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 -DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 -e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
....+|...-+..+-+-=-||...+|++++-++.-.|.+-
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence 3333454455677777777999999988888777766654
No 152
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.41 E-value=4.3 Score=43.91 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCC-C--CCchhHHHHHHH-HHHHhhh-cccccHHHHHHHHHhhc
Q 007424 18 DRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSS-D--KPGVRKECIHVI-ATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss-~--kp~~RKaaI~lL-GvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
+.++.+.++ |+.|..+-.=.+ +|.|+..|.+.... . +...=...++.+ +.+..-+ ++.|||-.|||.|+.-|
T Consensus 190 ~~~~~r~~a--L~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltcl 267 (343)
T cd08050 190 SNEEKRREA--LQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCL 267 (343)
T ss_pred CCHHHHHHH--HHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHh
Confidence 455555544 667766544445 68888888766332 1 122212222222 2223333 88899888888777444
Q ss_pred ----------cCCChhHHHHHHHHHHhhhhhhccc--hhHH-HHHHHHHHHccCCChh-HHHHHHHHHHHHHh
Q 007424 92 ----------RDKNSALQATCISTVSSLSPRVGAS--AFVT-MLKLLSDALFTEQDTN-AQVGAALCLAATID 150 (604)
Q Consensus 92 ----------kDpDs~VR~Ac~~aLg~LAe~l~d~--~~~s-llkPL~eaL~~eqdk~-vQ~~AA~cLaalIE 150 (604)
-|....+|+-++..|+.++...... .... +..-|..+|++...+. ..-||..+|.++..
T Consensus 268 v~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 268 VAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 2233479999999999999998652 2222 6777888887554444 47888888888753
No 153
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.25 E-value=16 Score=40.43 Aligned_cols=203 Identities=10% Similarity=0.104 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh-HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc--
Q 007424 58 GVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA-LQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-- 131 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~-VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~-- 131 (604)
..=-+.+..||-+..|. .-..|..-+..+|+-..+-+... ..+.-...+.++.+.= ..+..+++..|+.
T Consensus 190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-----p~l~~~~i~~llk~W 264 (409)
T PF01603_consen 190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-----PSLAEPVIKGLLKHW 264 (409)
T ss_dssp STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH------GGGHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHhC
Confidence 44445556666665554 22223344444445555544433 2455555555554431 2366666777653
Q ss_pred -CCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHh
Q 007424 132 -EQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLG 209 (604)
Q Consensus 132 -eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e 209 (604)
..+..-|..--.=+..+++..++. ...+...|+.++.++++++++++-..++.....-.-. ..+..+-..++|.|.+
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFP 343 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHH
Confidence 334445555555556666665432 2467788999999999999999855544422211000 0112344567777777
Q ss_pred hhcC---C--cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 210 FLSS---Q--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 210 ~L~s---~--Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
.|.. . +-.+|..|..+|..+...-++.|.. |.+.+. ++.+.-.+...+-.+.|++|.
T Consensus 344 ~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~----~~~~~~----~~~~~~~~~~~~r~~~W~~i~ 405 (409)
T PF01603_consen 344 ALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK----CAQKYK----EKEQKEKAREKKRKKKWKKIE 405 (409)
T ss_dssp HHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH----HHHHHH----HHHHHHHHSSHHHHHHHTT-S
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 7642 3 3458999999999999877777664 344443 233333334456677898876
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=3.8 Score=48.39 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=114.3
Q ss_pred CCCCCCchhHHHHHHHHHH--HhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 52 NSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
..+.+|-.|..++..++.. +.+. ..-+.++|++ .++|++--||+||+.|+|-+.-.- | ..|+-..+.|
T Consensus 528 ~~dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d---p--~~~~s~V~lL 597 (929)
T KOG2062|consen 528 LRDKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD---P--EQLPSTVSLL 597 (929)
T ss_pred hcCCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC---h--hhchHHHHHH
Confidence 3455789999999766654 3333 1122333333 267899999999999999875442 2 2333344444
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHH
Q 007424 130 FTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLL 208 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~ 208 (604)
...-|++|..|||+||.-.|-+.+... . -.|++.| .+.+ +|--+.|+|+.---++|--...-|-...+...+.
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~~e--A-i~lLepl---~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~ 671 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGLKE--A-INLLEPL---TSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLE 671 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCcHH--H-HHHHhhh---hcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 333499999999999999888766421 1 1122222 2344 5554555554333334554444466666666666
Q ss_pred hhhcC--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 209 GFLSS--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 209 e~L~s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..+.+ +|-.+.--|+-+=|- ..+.|..+. |.+...-..+|++.|=..+ -=+|.|==
T Consensus 672 kvI~dKhEd~~aK~GAilAqGi-ldaGGrNvt------islqs~tg~~~~~~vvGl~-~Flq~WyW 729 (929)
T KOG2062|consen 672 KVINDKHEDGMAKFGAILAQGI-LDAGGRNVT------ISLQSMTGHTKLDAVVGLV-VFLQYWYW 729 (929)
T ss_pred HHhhhhhhHHHHHHHHHHHhhh-hhcCCceEE------EEEeccCCCCchHHHHHHH-HHHHHHHH
Confidence 66653 555555555544332 234454443 3444667778888887764 45677643
No 155
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.17 E-value=5 Score=42.04 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=96.0
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---hHH--HHHHHHHHHc---c--------CCChhHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT--MLKLLSDALF---T--------EQDTNAQ 138 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~---~~s--llkPL~eaL~---~--------eqdk~vQ 138 (604)
.+..|++-++|.|...+-|.++.++--.+..|..|...+.... +.. +...+.++|+ - ++...+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 8889999999999999999999999999999999998774322 111 2333333332 1 3344566
Q ss_pred HHHHHHHHHHHhhcCCC-C---hhhHHHHHHH-HHHHhcCC----chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHH
Q 007424 139 VGAALCLAATIDAAQDP-D---AGKLGRMEVR-LERLLKSE----VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLL 208 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~-i---~~yL~~L~~R-L~klL~s~----~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~ 208 (604)
..|.-||-.++...... . ...+.+++-. ++.-+.+. ...+..+++..+..++. .|-...-|+..+++.|.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77788887776653211 1 1233443333 55555444 35677888888888886 55555589999999999
Q ss_pred hhhcCCc
Q 007424 209 GFLSSQD 215 (604)
Q Consensus 209 e~L~s~D 215 (604)
+++.+.+
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9887754
No 156
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=11 Score=45.11 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=141.0
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCCh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs 96 (604)
+.+..+.+-++.+-.|+.. .|.-|-+++.-+.= .+++...++.-=|..|..|+... .+..|+.-+.--++++|-
T Consensus 333 s~~~vqyvvL~nIa~~s~~-~~~lF~P~lKsFfv-~ssDp~~vk~lKleiLs~La~es----ni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 333 SNREVQYVVLQNIATISIK-RPTLFEPHLKSFFV-RSSDPTQVKILKLEILSNLANES----NISEILRELQTYIKSSDR 406 (968)
T ss_pred cCCcchhhhHHHHHHHHhc-chhhhhhhhhceEe-ecCCHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHHhcCch
Confidence 4555666655555555542 23334444433321 22222244555555566666544 445566666666788887
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-c
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-V 175 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-~ 175 (604)
.|-.+++.|+|+.|..+..-+ ..-+.=|+..| ...+..|-..|+..+..+++.-+. .-.+++-+|+++|.+- .
T Consensus 407 ~faa~aV~AiGrCA~~~~sv~-~tCL~gLv~Ll-sshde~Vv~eaV~vIk~Llq~~p~----~h~~ii~~La~lldti~v 480 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGSVT-DTCLNGLVQLL-SSHDELVVAEAVVVIKRLLQKDPA----EHLEILFQLARLLDTILV 480 (968)
T ss_pred hHHHHHHHHHHHHHHhhCchh-hHHHHHHHHHH-hcccchhHHHHHHHHHHHHhhChH----HHHHHHHHHHHHhhhhhh
Confidence 888999999999988874321 12556666666 334667888889999999997543 2245677788888543 4
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcc
Q 007424 176 FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDK 255 (604)
..||+.+|=.||-.+.. . .-..+.++..+..-++++.-.+|-+.+....+|-..-.+- .+--+..+|+-.|||-
T Consensus 481 p~ARA~IiWLige~~e~--v-pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~---~kll~~Yv~~L~~yD~ 554 (968)
T KOG1060|consen 481 PAARAGIIWLIGEYCEI--V-PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ---TKLLVQYVFELARYDL 554 (968)
T ss_pred hhhhceeeeeehhhhhh--c-chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh---HHHHHHHHHHHhccCC
Confidence 44666655566633321 1 1223466777777778888888877766665554422222 4455677999999999
Q ss_pred hhHHHHHH
Q 007424 256 VKVVREVM 263 (604)
Q Consensus 256 vK~VRda~ 263 (604)
-=.|||-+
T Consensus 555 sYDiRDRa 562 (968)
T KOG1060|consen 555 SYDIRDRA 562 (968)
T ss_pred CcchhHHH
Confidence 99999975
No 157
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=20 Score=39.24 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=108.7
Q ss_pred HHHHHhhcCCCChHHHHHhhhh---cCCCCCCchhHH---HHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHH
Q 007424 29 LDSIAATVDPTLLPTFLSCILS---TNSSDKPGVRKE---CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATC 102 (604)
Q Consensus 29 LD~lA~~L~pe~ip~fL~~L~e---~~ss~kp~~RKa---aI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac 102 (604)
+-+.-+-||--.+|.+...|.- -..=.+-.+|+. |+.+|..|-..-.=+-..|.++|.+.++|.-+|.+|.--+
T Consensus 23 ehSVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLa 102 (524)
T KOG4413|consen 23 EHSVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILA 102 (524)
T ss_pred HhHHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhh
Confidence 3334444454446666555531 112223457777 6666666633222233467788999999999999999999
Q ss_pred HHHHHhhhhhhcc--ch---h--H-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCC--hhhHHHHHHHHHHH
Q 007424 103 ISTVSSLSPRVGA--SA---F--V-TMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPD--AGKLGRMEVRLERL 170 (604)
Q Consensus 103 ~~aLg~LAe~l~d--~~---~--~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i--~~yL~~L~~RL~kl 170 (604)
|..+|++-+.+.- .. . . .+++.+++.+.++.+ .|..+|.-.+.++--. +-+.+ -+.+..+--|=+.+
T Consensus 103 ckqigcilEdcDtnaVseillvvNaeilklildcIggedd-eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa 181 (524)
T KOG4413|consen 103 CKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD-EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA 181 (524)
T ss_pred HhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh
Confidence 9999999998752 11 1 1 178899999965544 4555554444322111 00000 00111111110000
Q ss_pred hcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH-cC-cchh
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV-EK-DAVP 238 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s-~Dw~lRkaAaDaLg~LA~~-~g-e~f~ 238 (604)
-. +.-++--+++.|--+..+......|. ..++..|..-|+. +|--+|...++....+|.. +| +++.
T Consensus 182 kc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 182 KC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred hh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 00 11233334444444443332221122 1245555544543 7888888888888888873 35 4433
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=89.77 E-value=1.8 Score=53.35 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHH----hhh-cccccHHHHHHHHHhhcc
Q 007424 21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLS----NSH-NLSPYITKIINSITRNFR 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa----e~h-~i~p~L~kIl~~IvrrLk 92 (604)
+++-|-..|..|++.+-++- +|.|-+||.+..+..-+.- -.-+.-|++.= ..+ .+.| +-..+|.+..-++
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 45667777788888775433 5666555543322211110 14555555541 222 4444 5556667777888
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhH---HHHHHHHHHHccCCChhHHHHHHHH-HHHHHhhcCCCChhhHHHHHHHHH
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALC-LAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~---sllkPL~eaL~~eqdk~vQ~~AA~c-LaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
-+.+.||-||+.++|.++.-....... .-+.|+++++ +.-+...++.| +.-+.+.+.-.+.+|.+-|.+-|+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~----~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL----DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 999999999999999998877542222 2456666665 43444444444 455556566677899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ 191 (604)
..+....--++.++-.+...++-
T Consensus 903 r~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhc
Confidence 99988877788888888888884
No 159
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.70 E-value=7.1 Score=46.35 Aligned_cols=178 Identities=17% Similarity=0.169 Sum_probs=98.3
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH--HHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK--IINSITRNFRDKNSALQATCISTVSSLSPRVG-AS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k--Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~ 116 (604)
.++.++..+. +.+...+..++++|..|+-...+.++|-+ ++|.++..|.|++ .|..|...|-.|+..=. +.
T Consensus 332 iV~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 332 IVEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS 405 (708)
T ss_pred CHHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH
Confidence 3777666664 34557899999999999776644555555 6677777787764 66778888887776321 01
Q ss_pred hhH--HHHHHHHHHHccCCChhHHHH-HHHHH--HHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 117 AFV--TMLKLLSDALFTEQDTNAQVG-AALCL--AATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 117 ~~~--sllkPL~eaL~~eqdk~vQ~~-AA~cL--aalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
-|. .-++.|+..|+...+..++.. .|+|+ +.--.++.-.. ...|+.|+.|.++ ..+ +.++-+|.-++
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~~D----~lLlKlIRNiS 478 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---TRD----PLLLKLIRNIS 478 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---ccc----HHHHHHHHHHH
Confidence 111 156777777765444444432 22222 11111110000 1346666666543 221 45666888888
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHc
Q 007424 191 GSGAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 191 ~ag~~f~pyf~~lm~~L~e~L~s~-Dw~lRkaAaDaLg~LA~~~ 233 (604)
+-.+....-|...|.-|...+... ++ ...+|+||.|+-..
T Consensus 479 ~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 479 QHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLT 519 (708)
T ss_pred hcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcc
Confidence 644322122223333333444433 33 35899999999843
No 160
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.67 E-value=0.52 Score=34.75 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=26.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
.+|.+++.|++++..|+..|++||+.|+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999874
No 161
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.65 E-value=3.1 Score=36.85 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
..+..+..-|.||.+-||.-++..|..|.+.-. ... ...++.-++. .+.++|+.+.-.|.-||+++++..++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345677888999999999999999999988764 211 1124444444 44789999999999999999997654
No 162
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=89.52 E-value=3.5 Score=37.41 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhhcc-CCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhH-HHHHHHHHHHHHhhc
Q 007424 78 PYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNA-QVGAALCLAATIDAA 152 (604)
Q Consensus 78 p~L~kIl~~IvrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~v-Q~~AA~cLaalIE~a 152 (604)
.+++.|+|++.++|+ -..+-.|-||.-.++.|+... +.. .++..|++++........ +..+-.||..+.+.=
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 378999999999999 677789999999999999986 333 388888888875443333 377888998888763
No 163
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.48 E-value=2.3 Score=48.91 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCh---HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLL---PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i---p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
-..++...|.+|....|.++. ..+.+-|.+ .-.-..+|+.+-++.-+.+- +-..=++++..+|.-+.|.+
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDce-- 463 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCE-- 463 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcc--
Confidence 456777888888888887772 222233333 22335677777766655442 22234566677777775544
Q ss_pred HHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLER 169 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~k 169 (604)
..+.+++-||.|.+...+.+... |+.-+..-++=| +-.+..+|..||.++.=+..+... +-+..++-|.+.
T Consensus 464 y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln 536 (898)
T COG5240 464 YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN 536 (898)
T ss_pred hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh
Confidence 56667777777777777655444 555555555323 335777777777777777666554 345555655553
No 164
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.14 E-value=55 Score=39.08 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=106.1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
.+..++-+|+|+...+|-.||--||--++.+.....+.+. .++.-|.+.|+ -+..|+|.+-|..||.++=+.-.++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 5778889999999999999999999999999886543221 24444444443 2678899999999999998644443
Q ss_pred ChhhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhcCcCcCCch----------------H--------------HHH
Q 007424 156 DAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGSGL----------------K--------------GLV 204 (604)
Q Consensus 156 i~~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~ag~~f~pyf----------------~--------------~lm 204 (604)
-.+..+ -+.-++ +.|+..++.++++.|.- ..-..||. + .-+
T Consensus 161 e~~v~n----~l~~liqnDpS~EVRRaaLsnI~v----dnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv 232 (892)
T KOG2025|consen 161 ECPVVN----LLKDLIQNDPSDEVRRAALSNISV----DNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRV 232 (892)
T ss_pred cccHHH----HHHHHHhcCCcHHHHHHHHHhhcc----CcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 333222 222333 45588899888876641 00001111 1 122
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 205 SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 205 ~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
..|..-|.+-+..+|+++.++|.. +.+.--...+++.|+..-----..|+-.+.+||=.
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 333444456678888888888765 22222223455555533333333466666666543
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=2.5 Score=48.58 Aligned_cols=121 Identities=11% Similarity=0.188 Sum_probs=83.0
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccchhH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFV 119 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~~~ 119 (604)
+..+|+. +.+..+-.+||+|+-+||.+|=-- +..++-++..|.| .+..||-+.+.|||..+.-..+
T Consensus 553 v~~lLh~---avsD~nDDVrRAAViAlGfvc~~D------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 553 VSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred Hhhhhee---ecccCchHHHHHHHHheeeeEecC------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 4555544 123334479999999999875322 1223445555665 5678999999999998877643
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
.....++++|..+.+.-|..+|+.|+.-+.---.+.+.+-+..+..++..++...
T Consensus 620 ~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 620 KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 2455666777656666688899999887765556666677788888888888654
No 166
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.82 E-value=8.4 Score=41.50 Aligned_cols=192 Identities=12% Similarity=0.120 Sum_probs=95.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCC----ChhHH--HHHHHHHHHHHhhc
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ----DTNAQ--VGAALCLAATIDAA 152 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eq----dk~vQ--~~AA~cLaalIE~a 152 (604)
|.+|+++.+ +-+.+...|+||...|.. +.+.|.+++-.+..+ .+| =++.+ ..-..-.-++..+-
T Consensus 198 YF~kvisal---~dEs~~~~r~aAl~sLr~------dsGlhQLvPYFi~f~-~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 198 YFDKVISAL---LDESDEQTRDAALESLRN------DSGLHQLVPYFIHFF-NEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhcc------CccHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 445555444 445677899999876643 244555444444433 222 11222 11122223334442
Q ss_pred CCCChhhHHHHHHHHHHHh------cCC----chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHh-----hhcC-CcH
Q 007424 153 QDPDAGKLGRMEVRLERLL------KSE----VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLG-----FLSS-QDW 216 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL------~s~----~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e-----~L~s-~Dw 216 (604)
.=.+.||++.|||-|+.+| +.+ ++.++..+...++= +-..|+.....+-|.+.. ||.. .-.
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~y---V~~~F~~~YktLkPRvtrTllKafLD~~k~~ 344 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKY---VFSNFSSSYKTLKPRVTRTLLKAFLDREKTE 344 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH---HHhhhhHhhhhhchHHHHHHHHHHHhccccc
Confidence 2233599999999988666 222 33344333333331 334554323344444433 3322 234
Q ss_pred HHHHHHHHHHHHHHHHc-----Ccchhhhh---hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 007424 217 AARKAAAEALWRLAVVE-----KDAVPEFK---GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPP 283 (604)
Q Consensus 217 ~lRkaAaDaLg~LA~~~-----ge~f~py~---~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~~p 283 (604)
.+.-.|+-.|..|...+ +..+.-|. ...++-.++--.|.-..|=|+...||-.+|.=.-..+-+.||
T Consensus 345 sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpnqr~~~~ 419 (450)
T COG5095 345 STQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPNQRTLPP 419 (450)
T ss_pred chhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCCccCCCC
Confidence 44556777777776522 22222232 223333334444555678899999999888632222344444
No 167
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.82 E-value=2.1 Score=38.53 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=59.8
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccC--------cchhHHHHHHHHHHHH
Q 007424 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRF--------DKVKVVREVMNKMIEA 269 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRf--------DKvK~VRda~~~AL~~ 269 (604)
.++..++..|...|.+.+|.+.--|+..|-++..-.|+.|..+..+-.-..+-+|| |.=..||+.+.+.+++
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998777766554555555554 3345899999999999
Q ss_pred HHh
Q 007424 270 WKQ 272 (604)
Q Consensus 270 wK~ 272 (604)
|.+
T Consensus 113 w~~ 115 (115)
T cd00197 113 WAS 115 (115)
T ss_pred HhC
Confidence 974
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.42 E-value=12 Score=46.02 Aligned_cols=219 Identities=16% Similarity=0.075 Sum_probs=128.9
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccc-cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSP-YITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p-~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
||+|+|+.|+.|..- .+|--|+.+||..-..- .|.= .=--|.|+|+|.|+.+-.-+|..-++--+.|-.-
T Consensus 470 PPeQLPiVLQVLLSQ------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv- 542 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV- 542 (1387)
T ss_pred ChHhcchHHHHHHHH------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-
Confidence 899999999988732 56777777777641111 1100 1124889999999999998998887766554321
Q ss_pred ccch-------------hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCC-chhH
Q 007424 114 GASA-------------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSE-VFKA 178 (604)
Q Consensus 114 ~d~~-------------~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~-~~ka 178 (604)
|+. |..++.|= .+ -++.....||--|+.+|.+-.-.-...|+. |+.--++.|+++ ..-.
T Consensus 543 -D~SCQ~dLvKe~g~~YF~~vL~~~-~~----~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 543 -DPSCQADLVKENGYKYFLQVLDPS-QA----IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred -CchhHHHHHhccCceeEEEEecCc-CC----CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 111 11122220 01 134566788888999999843322333433 444445666664 4456
Q ss_pred HHHHHHHHHHHHh--cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhH-------------
Q 007424 179 KAAGLVVVGSVIG--SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGK------------- 243 (604)
Q Consensus 179 K~alLsaIGSiA~--ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~------------- 243 (604)
|.=+.-|+|-+-+ -.+.+..-=...-..|...|+++--++|.+|.=|||++.....+.|..-+..
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~ 696 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTS 696 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhh
Confidence 6666668886654 1122211112234556666777889999999999999887543333322211
Q ss_pred -------HHHHHHhccCcchhHHHHHHHHHHH
Q 007424 244 -------CLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 244 -------~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
|+-.|=....|-..-||..+..+|.
T Consensus 697 ~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 697 IEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 1113333445777888888877764
No 169
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.38 E-value=29 Score=42.12 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=131.2
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC--CchhHHHHHHHHHHHhhh-------c
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH-------N 75 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~k--p~~RKaaI~lLGvLae~h-------~ 75 (604)
.|+.++.+|.-+-+.|+.--+..|.-..-..+++ . |-..|.+...+.. -+.|..++..|-...+.| +
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-~---f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTE-G---FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhccccch-H---HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 5788899998886666544444433222222222 2 4444444433332 266888887776666666 4
Q ss_pred cccc-----HHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 76 LSPY-----ITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 76 i~p~-----L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
..|. ..+ |-..+.+.|-|++..+|.|.+.++..+|.+--=.....+++-+++.| ..-+.+.--+|-.||+-+.
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l-~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL-SSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH-hccchhhhhhHHHHHHHHH
Confidence 4444 222 23355667779999999999999999998852111233677777777 3355566778899998877
Q ss_pred hhcCC----CChhhHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHh----cCc-------Cc-CCchHHHHHHHHhhh
Q 007424 150 DAAQD----PDAGKLGRMEVRLERLLKSEVFK--AKAAGLVVVGSVIG----SGA-------VD-GSGLKGLVSCLLGFL 211 (604)
Q Consensus 150 E~a~d----~i~~yL~~L~~RL~klL~s~~~k--aK~alLsaIGSiA~----ag~-------~f-~pyf~~lm~~L~e~L 211 (604)
+...+ .+.+....=|-+++++....+.. ++.+-+-...+++. .++ .| .+.+.+.|..+...+
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 65421 11222223345666666555444 33332233333332 121 11 144444444444444
Q ss_pred c---CCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 212 S---SQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 212 ~---s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
. -++|.+|..-+-++..+..-.+....||
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 3 2579998888887777666554444444
No 170
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.67 E-value=2.3 Score=38.68 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=69.5
Q ss_pred HHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------------------cccccHHHHHHHHHhhc
Q 007424 30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------------NLSPYITKIINSITRNF 91 (604)
Q Consensus 30 D~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------------------~i~p~L~kIl~~IvrrL 91 (604)
-.|+..-=|+.-|-|+..+.+...+ .+......+.+|..+.+.. .+..+++.|+.++.+.|
T Consensus 13 ~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l 91 (148)
T PF08389_consen 13 AEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQIL 91 (148)
T ss_dssp HHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443344444444444443333 3566667777777775544 24556788888888888
Q ss_pred cCCC----hhHHHHHHHHHHhhhhhhccchhH--HHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 92 RDKN----SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 92 kDpD----s~VR~Ac~~aLg~LAe~l~d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
.... ..+..++.++++.+..|+.-..+. .++.-++..| +++..+..|+-||
T Consensus 92 ~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl 148 (148)
T PF08389_consen 92 SQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL---QSPELREAAAECL 148 (148)
T ss_dssp HHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence 7766 567888888888888876211111 1677777766 3455688888886
No 171
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.00 E-value=17 Score=35.87 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=85.5
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|+..|.+..-+++..+|..|+.+++.+.+.-++.| ...+|+++-...||++.||..|...+..+.+.... +
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s--~-- 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES--L-- 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH--H--
Confidence 45667777777777888999999999999988777755 56899999999999999999999998888877521 0
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+-..+.+ .++ .|+.+..-+...... ........+.++..+++ ++-+-|...+..|-....
T Consensus 80 v~~~~~~--------gi~--~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 80 VESRYSE--------GIR--LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHH--------HHH--HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence 1111111 122 233333333321110 01114556777777877 334555666666555443
No 172
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=86.93 E-value=7.9 Score=43.96 Aligned_cols=196 Identities=17% Similarity=0.068 Sum_probs=116.7
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc----------CCC
Q 007424 65 HVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT----------EQD 134 (604)
Q Consensus 65 ~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~----------eqd 134 (604)
..+-.++.+. .+.=..+++.|+-. .|++..|-+.+-+.|-++.-.+-+ ..++..|+...+| .-+
T Consensus 223 ~il~fL~sg~--f~d~~~~~~~liAs-ad~~~~V~~~ae~~LKr~~~~~ed---~~~V~~L~~Ly~G~~~~~~~~~~pa~ 296 (501)
T PF13001_consen 223 AILKFLASGF--FPDEERFPPLLIAS-ADSNSSVSDRAEDLLKRLSVSLED---PDLVDRLFDLYLGKGIPPENGRPPAS 296 (501)
T ss_pred HHHHHHHhcC--CCcHhHHhheeeEE-eCCcchHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCCchhcCCCCCC
Confidence 3444455555 34445566666655 888888988888888888766533 2477777777762 123
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHH---HHHHhcCc-CcC-CchHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVV---GSVIGSGA-VDG-SGLKGLVSCL 207 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaI---GSiA~ag~-~f~-pyf~~lm~~L 207 (604)
+.+|..-..-|-+-+.++. ..+.++.=+...|.++ +.++|...+..+ ..+....+ ... ..-+.+...+
T Consensus 297 ~~lq~kIL~~L~kS~~Aa~-----~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 297 PRLQEKILSLLSKSVIAAT-----SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred HHHHHHHHHHHHHhHHHHh-----CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 4455554444544444332 2344444445556566 678888888877 44443211 110 1111122222
Q ss_pred Hhhh--------cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 208 LGFL--------SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 208 ~e~L--------~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...+ .+++-.+|..|-++||.|+.-.+..|..=.+-+-..|.++ -+--..||-++.+||..|-.
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHH
Confidence 2222 1358999999999999999987766633234444444444 46788889888888888753
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.77 E-value=11 Score=39.71 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHhhcCCCCh--hhHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 146 AATIDAAQDPDA--GKLGRMEVRLE-RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 146 aalIE~a~d~i~--~yL~~L~~RL~-klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
..++|+...... ..+..|+..|+ ..+.+++..+|..++.|+|-..-..... ....++.+...+..++-.+|..|
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---AKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555443322 24567777766 7888998899999999999776555432 23334445555555799999999
Q ss_pred HHHHHHHHHHcC-cchhhhhh--------HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 223 AEALWRLAVVEK-DAVPEFKG--------KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 223 aDaLg~LA~~~g-e~f~py~~--------~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.+|--|....| +.|..... .++++|...=.+-...||..+.|++--+
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999988 66655543 5666666665555777999988887543
No 174
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=86.60 E-value=23 Score=37.89 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=103.2
Q ss_pred hHHHHHhh-hhcCCCCCCchhHHHH-HHHHHHHhhh--cccccHHHHHHHHHh----hccC---CChhHHHHHHHHHHhh
Q 007424 41 LPTFLSCI-LSTNSSDKPGVRKECI-HVIATLSNSH--NLSPYITKIINSITR----NFRD---KNSALQATCISTVSSL 109 (604)
Q Consensus 41 ip~fL~~L-~e~~ss~kp~~RKaaI-~lLGvLae~h--~i~p~L~kIl~~Ivr----rLkD---pDs~VR~Ac~~aLg~L 109 (604)
+|+++..+ .||..+ .|..|..-+ .+++.++.-. .+.++++.|+..|.. -+.+ .-|-.|..--.=+.++
T Consensus 69 i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp HHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 78888855 677654 567776655 6677776655 788999998887663 3333 2267888888888888
Q ss_pred hhhhccc--hhH-HHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC---CC-----hhhHHHHHHHHHHHhcCC-
Q 007424 110 SPRVGAS--AFV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD---PD-----AGKLGRMEVRLERLLKSE- 174 (604)
Q Consensus 110 Ae~l~d~--~~~-sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d---~i-----~~yL~~L~~RL~klL~s~- 174 (604)
.+++... ... ..++.+++++. .+.++.+...+..+|..++++... .. ..|+-.++..++..+..+
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 8876431 111 14555555553 578889999999999999888644 11 245566777777777554
Q ss_pred ---chhHHHHHHHHHHHHHhcCcCcCCc
Q 007424 175 ---VFKAKAAGLVVVGSVIGSGAVDGSG 199 (604)
Q Consensus 175 ---~~kaK~alLsaIGSiA~ag~~f~py 199 (604)
.|+....++..+-.++..+....|-
T Consensus 228 Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l 255 (319)
T PF08767_consen 228 HKSGFKLQSQILSNLFRLVESGSIQVPL 255 (319)
T ss_dssp -GGGHHHHHHHHHHHHHHHHTT-SSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 5566677777777666665444343
No 175
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=86.39 E-value=2.8 Score=48.95 Aligned_cols=197 Identities=14% Similarity=0.239 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccc--cHHHHHHHHHhhccCCCh
Q 007424 21 TYSQAAKELDSIAATVDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP--YITKIINSITRNFRDKNS 96 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p--~L~kIl~~IvrrLkDpDs 96 (604)
-++-.+.-|=.+++.|+.+.+ .-|+.+|..-..+++-..|- ++|-.+=..- .+.+ .-.+|+|++..++.|.++
T Consensus 307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~ 383 (690)
T KOG1243|consen 307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA 383 (690)
T ss_pred cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH
Confidence 444555556667777765542 33455555555555545553 2332221111 2222 356899999999999999
Q ss_pred hHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 97 ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
.+|.-++.++..|+..+....... +++=+...= .|+...+..--..||.++-.-+.... .=+-|.-++.+.|+++-
T Consensus 384 ~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf 460 (690)
T KOG1243|consen 384 TLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPF 460 (690)
T ss_pred HHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhC-ccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCC
Confidence 999999999999999885421111 333222221 23333344444445544333221100 00114446677888887
Q ss_pred hhHHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 176 FKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~ag~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
..+|.|.+-++.+. ..-|. -....++|.|.....+.+-.+|..|..++
T Consensus 461 ~paR~a~v~~l~at---~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 461 VPARKAGVLALAAT---QEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred CCchhhhhHHHhhc---ccccchhhhhhhccccccccccCcccchhhHHHHHH
Confidence 77777655555532 22221 23345778888888888888887776554
No 176
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.11 E-value=42 Score=34.19 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=112.4
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHc
Q 007424 52 NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALF 130 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~ 130 (604)
....+|......+.+|+.+|..-. ...+.++..|......+...++..+..-+..+-.. .+.+ .++++++.-+.
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~---~~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA---NDRHFPFLQPLLLLLI 84 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHH
Confidence 345566777788888887766323 67888888888888877776654444444444333 3322 36666665521
Q ss_pred ---------cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhcCcCcCCch
Q 007424 131 ---------TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (604)
Q Consensus 131 ---------~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~ag~~f~pyf 200 (604)
++.....+.+.|.++..+|...++ +-..+++.|..+| ++.+-.+++..+.+|.++-.++- .-|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v---vd~ 157 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV---VDF 157 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh---ccH
Confidence 122344778889999999998765 6677888888888 66677788888888887774321 123
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC------cchhhhhhHHHHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK------DAVPEFKGKCLKIFE 249 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g------e~f~py~~~~i~~Le 249 (604)
..+-..|...| +...|-..+..|..+-..++ +....++..++..|=
T Consensus 158 ~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW 209 (234)
T PF12530_consen 158 YSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLW 209 (234)
T ss_pred HHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHH
Confidence 34445555555 33334445555555554332 334445555555543
No 177
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=86.08 E-value=17 Score=41.29 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhcCCCC-hHHHHHhhh--hc-CCCCCCchh-HHHHHHHHHHHhhhcccccHHHHHHHHHhhccCC--
Q 007424 22 YSQAAKELDSIAATVDPTL-LPTFLSCIL--ST-NSSDKPGVR-KECIHVIATLSNSHNLSPYITKIINSITRNFRDK-- 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~-ip~fL~~L~--e~-~ss~kp~~R-KaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDp-- 94 (604)
...|-..|+++.-.+.-.. +..++.... .. ..+.-++++ .--++.|++|+....-....+.++.++..+|..+
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~ 333 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNT 333 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCcc
Confidence 4556666676666664434 555555555 21 111122332 2336788888776644556788888888888887
Q ss_pred ChhHHHHHHHHH---HhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 95 NSALQATCISTV---SSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 95 Ds~VR~Ac~~aL---g~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
.+-+|..+..-+ .....++ .......+..+|++ .+.+++
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~------------------------~~~~l~~l~~~i~~--------------~g~p~~ 375 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHI------------------------SPQILKLLRPVILS--------------QGWPLI 375 (501)
T ss_pred ccccchhcchhhhcchHHhhhc------------------------CHHHHHHHHHHHHh--------------cCcccc
Confidence 556666665444 2222221 01111122333332 222233
Q ss_pred --------cCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh----
Q 007424 172 --------KSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP---- 238 (604)
Q Consensus 172 --------~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~---- 238 (604)
.+.+...|...+.+||.++... ..|..- -.++..|-+-|.+++-++|.+.-|||+.|+.+..+.-.
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~ 454 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDE 454 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhH
Confidence 2346678999999999998643 333211 13555555566778999999999999999997764333
Q ss_pred hhhhHHHHHHHhccCcchhHHHHHHHH
Q 007424 239 EFKGKCLKIFESKRFDKVKVVREVMNK 265 (604)
Q Consensus 239 py~~~~i~~Le~cRfDKvK~VRda~~~ 265 (604)
........++...-.+.+..+|=++.+
T Consensus 455 ~~~~~~~~l~~~~~~~~~~~~R~~avk 481 (501)
T PF13001_consen 455 QKRLLLELLLLSYIQSEVRSCRYAAVK 481 (501)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 222222223333333555666655443
No 178
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=4.7 Score=46.52 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=102.0
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV 165 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~ 165 (604)
.|.+.|.|-||.+|-+-+.+++.- -... . -...++-|+-.-..+.|..|..+|..||.-+|= .| +.+++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alA-y~GT-g-n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D------~~~lv 588 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALA-YVGT-G-NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD------RDLLV 588 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHH-HhcC-C-cchhHhhhheeecccCchHHHHHHHHheeeeEe--cC------cchhh
Confidence 566779999999999888887632 1111 1 112455555443356666788888777765542 33 45778
Q ss_pred HHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 166 RLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 166 RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
+++++|... +|+++.+..-++| ||.+|... +.++..|.....+..--+|-+|+=+++.|..-.-+.+-|--..+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLG-iacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALG-IACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhh-hhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 888888766 8999988888888 45565321 23444444444566778999999999998887765555544777
Q ss_pred HHHHHhccCcc
Q 007424 245 LKIFESKRFDK 255 (604)
Q Consensus 245 i~~Le~cRfDK 255 (604)
++-|+.-=-||
T Consensus 664 ~k~f~~vI~~K 674 (926)
T COG5116 664 IKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHhhh
Confidence 77777655565
No 179
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=7.6 Score=42.91 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--- 115 (604)
+--+|.++. +.+..+|+.++.=|=-+--.| .+..|+-.+++-+.-++.|-|..||++....+--+...++.
T Consensus 60 lkeLl~qlk----HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQLK----HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhhc----CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 445555554 677899999998777765557 67779999999999999999999999999888877766653
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
.++.. ++.-+..|| .+-.+.+|.-++.=|.-+++..++..
T Consensus 136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHH
Confidence 23333 555566666 67788899888888888888765433
No 180
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=85.02 E-value=7.6 Score=38.30 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=69.1
Q ss_pred cccccHHHHHHHHHhhccC-C-----------------ChhHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHccCCCh
Q 007424 75 NLSPYITKIINSITRNFRD-K-----------------NSALQATCISTVSSLSPRVGAS-AFVTMLKLLSDALFTEQDT 135 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkD-p-----------------Ds~VR~Ac~~aLg~LAe~l~d~-~~~sllkPL~eaL~~eqdk 135 (604)
.|.|||+.|+|.|..-++= + .--+|.+|.+++-.+-+.+... ....|+.-+...| .| +.
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~~ 79 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-EH 79 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--H
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-cH
Confidence 4679999999999855442 2 2458999999999987766432 2333666666666 45 66
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~ 172 (604)
.++.-+..-|.+++...+..+...|..|++.|-+.|+
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 7888899999999988877777777788888777774
No 181
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.85 E-value=19 Score=43.28 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=121.1
Q ss_pred HHHHHhhhhcCCC----CCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--
Q 007424 42 PTFLSCILSTNSS----DKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-- 115 (604)
Q Consensus 42 p~fL~~L~e~~ss----~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-- 115 (604)
..|-..+.+...+ +.|-.|-++|+ ++++-+-+.=.+||=.++|.+++.|+-+..+|+.=|+.++-.+-..-..
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIK-y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIK-YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccc-eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 4444555554444 34445555544 4555554555678899999999999999999988777777655322111
Q ss_pred ---------chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh----cCC-chhHHH
Q 007424 116 ---------SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE-VFKAKA 180 (604)
Q Consensus 116 ---------~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL----~s~-~~kaK~ 180 (604)
.|+.. ++..||+++- -.++.--..-.-|+-+++--+++.+.++.+.++.+|.+++ ++| +.+.--
T Consensus 534 ~~if~~~~iap~~~~ll~nLf~a~s-~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnH 612 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLTNLFKALS-LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNH 612 (960)
T ss_pred ccccchhhcchHHHHHHHHHHHhcc-CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHH
Confidence 23333 6777777773 2222111234456777777777878788888777777666 455 445556
Q ss_pred HHHHHHHHHHh-cCcCc---CC-chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 181 AGLVVVGSVIG-SGAVD---GS-GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 181 alLsaIGSiA~-ag~~f---~p-yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
.+...||.++. .+..- .+ +-..++|.++..|.+|-.+.=--+...|+.+....+
T Consensus 613 YLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 613 YLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999885 44332 23 334577888888877766655667777777776554
No 182
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=84.76 E-value=11 Score=37.29 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHH-hhh
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS-NSH 74 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa-e~h 74 (604)
.+||--++.||+. .+|..+.++.|-.++.++ +-+.-+-+.+||..-. ..+| ..|+..|--|. ..+
T Consensus 2 ~eikplLIsCL~~---q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 2 REIKPLLISCLTM---QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLY 74 (174)
T ss_pred cchHHHHHHHHHh---hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhh
Confidence 3688999999987 455566666666655542 4455788889997533 2222 45666676665 435
Q ss_pred --cccccHHHHHHHHHhhccCCCh---hHHHHHHHHHHhhhhhhcc
Q 007424 75 --NLSPYITKIINSITRNFRDKNS---ALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 75 --~i~p~L~kIl~~IvrrLkDpDs---~VR~Ac~~aLg~LAe~l~d 115 (604)
++.|+|.++++.+.++|.+|.. ...-.|..+.-.++=++.+
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e 120 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE 120 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999954 2233344333344444443
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.75 E-value=5.3 Score=49.21 Aligned_cols=168 Identities=11% Similarity=0.162 Sum_probs=102.6
Q ss_pred CC-hHHHHHhhhhc----CCCCCCchhHHHHHHHHHHHhh-h-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 39 TL-LPTFLSCILST----NSSDKPGVRKECIHVIATLSNS-H-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 39 e~-ip~fL~~L~e~----~ss~kp~~RKaaI~lLGvLae~-h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
.+ +..|.+.+.+- ....+|..+.+|.++||-+.-. + |+..|+|-++.++-+ -|++.||.-|+-|+|-|+-
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhh
Confidence 44 44444444332 3445678899999999987433 3 777888877666543 5889999888888888876
Q ss_pred hhccchhHHHHHHHHHHH---ccCCChhHHHHHHHHHHHHHhhcCCCChh--------------hHHHHHHHHHHHhcCC
Q 007424 112 RVGASAFVTMLKLLSDAL---FTEQDTNAQVGAALCLAATIDAAQDPDAG--------------KLGRMEVRLERLLKSE 174 (604)
Q Consensus 112 ~l~d~~~~sllkPL~eaL---~~eqdk~vQ~~AA~cLaalIE~a~d~i~~--------------yL~~L~~RL~klL~s~ 174 (604)
.. + .++.|-.+.| ++|.++.|+..|.+-|.-+|=+--=.+.+ -...|...+++-|.+.
T Consensus 991 ~f--p---nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 991 RF--P---NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred hc--c---cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 64 2 2444444443 36888889998888887776542111122 3344555666666666
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCc
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQD 215 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~D 215 (604)
+-.+-+.+-..|+-+..-+-.+.+| ..+|..|++++..++
T Consensus 1066 ~n~iynlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1066 GNTIYNLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred ccchhhhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 5333333334444322222223344 589999999887653
No 184
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=84.66 E-value=26 Score=41.46 Aligned_cols=116 Identities=11% Similarity=0.225 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cc-cccHHHHHHHHHhhccC
Q 007424 19 RDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL-SPYITKIINSITRNFRD 93 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i-~p~L~kIl~~IvrrLkD 93 (604)
.++.-+=++-+|.|.+-++++. ...+|..|..+..+.....-..++..++.+++.- ++ .+-||+|... -++-
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l---~~~t 440 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL---AFKT 440 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc---hhcc
Confidence 3466677888999999999888 6888999988888888888999999999998877 22 2234444333 4556
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ 138 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ 138 (604)
.+..|+..|+.+++.+.+.+........+.|++..+ .-.++.+-
T Consensus 441 t~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv 484 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIV 484 (700)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHH
Confidence 777899999999999997764433333777777777 22344433
No 185
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.41 E-value=41 Score=35.21 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC---h---hhHHHHHHHHHHHhc--------CCchhHHHHHHHH
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---A---GKLGRMEVRLERLLK--------SEVFKAKAAGLVV 185 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i---~---~yL~~L~~RL~klL~--------s~~~kaK~alLsa 185 (604)
.+++|++..+ ++.++.+...++.||..+++..+... . ++..-+-+-|..+|- ..+..+=.+++.|
T Consensus 119 liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3666666666 78888999999999999999876554 2 223334445666665 4455666777888
Q ss_pred HHHHHhcC--cCcCCchHHHHHHHHh-hh----cCC---cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHh
Q 007424 186 VGSVIGSG--AVDGSGLKGLVSCLLG-FL----SSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES 250 (604)
Q Consensus 186 IGSiA~ag--~~f~pyf~~lm~~L~e-~L----~s~---Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~ 250 (604)
+-+++.+- ....++...+...|.+ .| ... .-.+|...++.|..+....|-...-|..+++.+|.+
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88887642 2222444444444444 22 223 488899999999999999996666677888877753
No 186
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.79 E-value=6.9 Score=41.32 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=82.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--------HHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--------KIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--------kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
...|+++|... +.+....++.+-+++-+.... ...+.+- ..+...++.|.-+|..+...++..++.|..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66777777765 567789999999999987766 2222221 266677778888999999999999999999
Q ss_pred hhccchhH---HHHHHHHHHHccC---CChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHh------cCC-ch
Q 007424 112 RVGASAFV---TMLKLLSDALFTE---QDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLL------KSE-VF 176 (604)
Q Consensus 112 ~l~d~~~~---sllkPL~eaL~~e---qdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL------~s~-~~ 176 (604)
+....... .++++++..|... .+...|..|..||..+...-.. ...+ ...++.|..+| .++ ++
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~--R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY--RQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH--HHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh--HHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 87654433 4788888888432 2345778889999988864211 1111 34555566666 222 45
Q ss_pred hHHHHHHHHHH
Q 007424 177 KAKAAGLVVVG 187 (604)
Q Consensus 177 kaK~alLsaIG 187 (604)
+..-.++-|+=
T Consensus 213 Ql~Y~~ll~lW 223 (312)
T PF03224_consen 213 QLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55444444444
No 187
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=83.77 E-value=14 Score=38.15 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHhhh----------cccccHHHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhhcc---chhHH----
Q 007424 59 VRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRVGA---SAFVT---- 120 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h----------~i~p~L~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l~d---~~~~s---- 120 (604)
.=|++-.+||.+++.. .-..++.+|--.++.-|..-- -++=.++..++..+++.+.. +....
T Consensus 63 ~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~ 142 (255)
T PF10350_consen 63 SIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEE 142 (255)
T ss_pred HHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 4477888888887422 333467777777777665532 45777888999999999873 22222
Q ss_pred HHHHHHHHHccC-CCh--hHH--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch--------hHHHHHHHHHH
Q 007424 121 MLKLLSDALFTE-QDT--NAQ--VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF--------KAKAAGLVVVG 187 (604)
Q Consensus 121 llkPL~eaL~~e-qdk--~vQ--~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~--------kaK~alLsaIG 187 (604)
.+.-+++.+.++ +.. ... +|--+++.+++-+.+....+.|+..|.+|+++.+.+.. -.+..++.++.
T Consensus 143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr 222 (255)
T PF10350_consen 143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILR 222 (255)
T ss_pred HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHH
Confidence 666777777433 221 222 34556667777775544347899999999999988743 36677889999
Q ss_pred HHHhc---CcCcCCchHHHHHHHHhhhcCCcHH
Q 007424 188 SVIGS---GAVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 188 SiA~a---g~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
+|..- +....||++..+..-.+.+.+++|+
T Consensus 223 ~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 223 AIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 98863 3444599999888888888899984
No 188
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=83.31 E-value=28 Score=40.18 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
.+.=+++|-..+..|+.+ ...|+..|..... .-++..+++-+..++.|+..| ..|++.++..+++.+..+......
T Consensus 53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~--~~yl~~vl~~LV~~f~p~~~~~~~ 129 (563)
T PF05327_consen 53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ--PKYLSPVLSMLVKNFIPPPSSIAE 129 (563)
T ss_dssp HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH---GGGHHHHHHHHHHGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhccCCCccccc
Confidence 333444555555567777 7777888876544 334567788888888888877 779999999999999887765332
Q ss_pred --------------HHHHHHHhhhhhhccchhHHHHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 007424 101 --------------TCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (604)
Q Consensus 101 --------------Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e--qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~ 164 (604)
-+-.+|..|.... |.-...+.|++..-|-. .....+..=...|=.+++.++..-.+.+.-++
T Consensus 130 ~~~~~~~~~~~~~~~vH~~L~~Il~lv--P~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi 207 (563)
T PF05327_consen 130 WPGCPPEKRREIYERVHDALQKILRLV--PTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLII 207 (563)
T ss_dssp ---------------HHHHHHHHHHH---GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHH
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3556666666554 33334677777666632 23445555555566666666433345677777
Q ss_pred HHHHHH
Q 007424 165 VRLERL 170 (604)
Q Consensus 165 ~RL~kl 170 (604)
.|++++
T Consensus 208 ~rLi~i 213 (563)
T PF05327_consen 208 ERLIKI 213 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 189
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.24 E-value=1.5 Score=51.05 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhhc---CChhHHHHHHHHHHHHHhhcCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KL---sDrDT~r~A~~eLD~lA~~L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+.-++++-+|.|| -||.++-.=++-++.++.+|+++++ ..+++++.--....++..|..+++.|.+|+.--.-...
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3445666677666 6888999999999999999997663 45555555555555779999999999999875511122
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
=..++-++-+.=.|.+..+|--.-..+|-++.++.-.... .+.-+..-+| .+.-.....++-++|.+..+..+. .+
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~~~--~~ 482 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYFDQ--SE 482 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccccch--hh
Confidence 3345555555555888999999999999999997421111 1344444456 344445777888888888875432 34
Q ss_pred hHHHHHHHHHHHhcCCchhHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAA 181 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~a 181 (604)
.-.+|+|++.-+.-.+...++..
T Consensus 483 va~kIlp~l~pl~vd~e~~vr~~ 505 (690)
T KOG1243|consen 483 VANKILPSLVPLTVDPEKTVRDT 505 (690)
T ss_pred hhhhccccccccccCcccchhhH
Confidence 45677777777776665554433
No 190
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.98 E-value=70 Score=34.10 Aligned_cols=186 Identities=21% Similarity=0.245 Sum_probs=104.8
Q ss_pred HhhhcCChh----HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------cccccHH
Q 007424 12 LLNKLSDRD----TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYIT 81 (604)
Q Consensus 12 ~L~KLsDrD----T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------~i~p~L~ 81 (604)
....|.|.+ -++-|...|+.+. .++. ++.+..+.+.+...+|.-|..++..+=... ..+||..
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~---~~~~----~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S 144 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG---DPES----LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS 144 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc---chhh----HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc
Confidence 344555555 2344777777765 3332 333444445677789999999999884444 2334432
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-----------------HHHHHHHHHccCCChhHHHHHHHH
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-----------------MLKLLSDALFTEQDTNAQVGAALC 144 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-----------------llkPL~eaL~~eqdk~vQ~~AA~c 144 (604)
.||-+. |....+..|...+.|...+. -+.-|++.| ....+-.+.-+|+|
T Consensus 145 ----------vdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l-~~~SalfrhEvAfV 210 (289)
T KOG0567|consen 145 ----------VDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGL-ADDSALFRHEVAFV 210 (289)
T ss_pred ----------CCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhc-ccchHHHHHHHHHH
Confidence 455543 34444555555555432111 122233333 22233344444454
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 145 LAATIDAAQDPDAGKLGRMEVRLERLLKS--EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 145 LaalIE~a~d~i~~yL~~L~~RL~klL~s--~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
|.-+.. +.-+|.|.+.|.. .+..++--+..|+|+|+. +.+++.|++|+.+++--+|..+
T Consensus 211 fGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 211 FGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred Hhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHH
Confidence 433322 1123444444432 367788778888886552 3688999999999999999988
Q ss_pred HHHHHHHHHHcCcch
Q 007424 223 AEALWRLAVVEKDAV 237 (604)
Q Consensus 223 aDaLg~LA~~~ge~f 237 (604)
.-+|-.+-..-++.|
T Consensus 272 ~valdm~eyens~~~ 286 (289)
T KOG0567|consen 272 EVALDMLEYENSKEF 286 (289)
T ss_pred HHHHHHHHHhccccc
Confidence 877766554444444
No 191
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.20 E-value=69 Score=33.52 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=105.1
Q ss_pred hhhcCChhHHHHHHHHHHHHHh--hcCCCChHHHHHhhhhc--CCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHH
Q 007424 13 LNKLSDRDTYSQAAKELDSIAA--TVDPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINS 86 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~--~L~pe~ip~fL~~L~e~--~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~ 86 (604)
++||.|..+...|++-|..|+. .++++....++..|.+. .++.-...|..++.+|..+.+-| .+...=+.++..
T Consensus 48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~ 127 (262)
T PF14500_consen 48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG 127 (262)
T ss_pred HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence 4688899999999999999884 34666677777777653 23334578999999999998887 443333444444
Q ss_pred HHh---hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc-------c--CCChh--HHHHHHHHHHHHHhhc
Q 007424 87 ITR---NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF-------T--EQDTN--AQVGAALCLAATIDAA 152 (604)
Q Consensus 87 Ivr---rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~-------~--eqdk~--vQ~~AA~cLaalIE~a 152 (604)
++. +=+||-=. --+.+-+..+.... ++..+..-||+.++ . .+++. ...--..+|...+-+.
T Consensus 128 ~i~~~~gEkDPRnL--l~~F~l~~~i~~~~---~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 128 FIQLIDGEKDPRNL--LLSFKLLKVILQEF---DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHhccCCCHHHH--HHHHHHHHHHHHhc---ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 333 33444421 11222222232222 12236666666664 1 22331 1111122222222111
Q ss_pred CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcC-cCCchHHHHHHH
Q 007424 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKGLVSCL 207 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~-f~pyf~~lm~~L 207 (604)
..+-+..+|-|++.|.+....+|.-.+..+...+.. |.. ..||...+-..|
T Consensus 203 ----~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 203 ----PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred ----HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 134466888888999999888998888887766643 221 225554444444
No 192
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=81.98 E-value=24 Score=35.44 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcC-c--------------CCc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAV-D--------------GSG 199 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~-f--------------~py 199 (604)
.+-.-....+.++.+.++..-.+++.+++..|.++-++++|..|..+=.+||+.+. +|.+ + .+-
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ 94 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcc
Confidence 34455566677778877766668999999999999999999999999999999886 4522 2 111
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhCCCC
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKR-FDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cR-fDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
=.+++|.|.+++...... ...+.|-|.+..|-+.-..+. -.+.-..+.--.-.-|+|--+|+-
T Consensus 95 raWLLPlLr~~i~~~~L~--------------fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~F 158 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLS--------------FFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGF 158 (198)
T ss_pred cchhHHHHHHhccCCChH--------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHh
Confidence 134667776666554333 223455555444444333211 112222222223445889888854
No 193
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.71 E-value=55 Score=37.85 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+.||+-.+...+--.+-.....|+--|..++.+++|+. +|-+|..|..-.. ..+.|..+++++|.+++--...|.
T Consensus 387 e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 387 ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHHHHHHHHHHHhCcH
Confidence 34444444444423345577888889999999998777 7999999885432 334999999999999776644454
Q ss_pred -HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 80 -ITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 80 -L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+..++..+..++++.. .-.|+..+.-.++..+
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 4555567777887766 5555555555555554
No 194
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.67 E-value=78 Score=33.74 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=114.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHH-HHHHHHhhc---CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh----h-h--
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAK-ELDSIAATV---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN----S-H-- 74 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~-eLD~lA~~L---~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae----~-h-- 74 (604)
-.++++.|..+-..++.-.|+. +++.+..++ ..+--..++..+.....+-+++.||.-+.++|.+.. . .
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3455555555544554444433 346666665 222246666777777778888999999999999864 2 2
Q ss_pred cccccHHHHHHHHHhhccCCChhHHH---HHHHHHHhhhhhhcc--------------chhHH-HHHHHHHHHccC-CCh
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQA---TCISTVSSLSPRVGA--------------SAFVT-MLKLLSDALFTE-QDT 135 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~---Ac~~aLg~LAe~l~d--------------~~~~s-llkPL~eaL~~e-qdk 135 (604)
++.+.++.++..+.+...-|-+.... .|+.++-.+...-.+ .+..+ |+.|= ++.. .+.
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~k---vyskl~~~ 176 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEK---VYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHH---HHhccCCH
Confidence 77788888888888888777665321 122222111111110 00011 11111 1112 233
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhh-HHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGK-LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS 212 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~y-L~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~ 212 (604)
....-.+.+|.++.....+...+- ...+-.-++-++-++ +..+|..++.++..+....... .-..++..+..+|.
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKWLS 254 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHH
Confidence 344556777777776654433222 344555677777777 8899999999998777543321 23345666666663
No 195
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=80.93 E-value=39 Score=39.69 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=94.9
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhc-------C-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccc
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATV-------D-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS 77 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-------~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~ 77 (604)
+..++.++..+.|-|-.+.|.-.|..+++.+ . .+...++++.+. .+...+.+.++-+|-.++-.+ +
T Consensus 378 t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~----dp~~~i~~~~lgai~NlVmef--s 451 (678)
T KOG1293|consen 378 TESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM----DPEIMIMGITLGAICNLVMEF--S 451 (678)
T ss_pred HHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh----CcchhHHHHHHHHHHHHHhhc--c
Confidence 3456677788889998888888777776653 2 222577777773 333455555555555444444 4
Q ss_pred ccHHHH-----HHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007424 78 PYITKI-----INSITRNFRDKNSALQATCISTVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (604)
Q Consensus 78 p~L~kI-----l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaal 148 (604)
++=.++ +-.|..-+.|+|+.+|.-++|+|..+.-...+ ++..-+-..++.-+.+++++.||..+..-|-.+
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444443 45788899999999999999999998766532 222225556666666889999999888877777
Q ss_pred Hhh
Q 007424 149 IDA 151 (604)
Q Consensus 149 IE~ 151 (604)
+.+
T Consensus 532 ~c~ 534 (678)
T KOG1293|consen 532 TCN 534 (678)
T ss_pred hcC
Confidence 655
No 196
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=1e+02 Score=36.89 Aligned_cols=251 Identities=20% Similarity=0.198 Sum_probs=144.7
Q ss_pred HHHHHHHHhhhcCChhHHH--HHHHHHHH-----HHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--c
Q 007424 5 LKTSVNGLLNKLSDRDTYS--QAAKELDS-----IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r--~A~~eLD~-----lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~ 75 (604)
+|.-+.++-+.|..||+-. .|++.+-. +++.+.++ ||- .|- +.++ -+.+|+.+.++|=.|-+.. .
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~K---lLv-S~~~-~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPK---LLV-SGSS-MDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHH---HHh-CCcc-hHHHHHHHHHHHHHHHhcCccc
Confidence 5666677777887777443 34433322 23333221 332 222 2222 3466666665555554434 3
Q ss_pred ccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-------c---------CCChhHH
Q 007424 76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF-------T---------EQDTNAQ 138 (604)
Q Consensus 76 i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-------~---------eqdk~vQ 138 (604)
+.| ..-..-|+..|.|.+-.|--|+.-=+-+|+.+-. +... -+++-+.-|. . =+.|-.|
T Consensus 183 ~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 VNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 333 2233456778999998887777776777766652 2211 1122111111 1 1245566
Q ss_pred HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhc----CC---chhHHHH-HHHHHHHHHhcCcCcCCchHHHHHHHHh
Q 007424 139 VGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLK----SE---VFKAKAA-GLVVVGSVIGSGAVDGSGLKGLVSCLLG 209 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~----s~---~~kaK~a-lLsaIGSiA~ag~~f~pyf~~lm~~L~e 209 (604)
...+..|..+ ..-.|+ ....|.+++++++...+ +. +..||.| +.++|.-+++.-.. ..-+..++..|.+
T Consensus 259 vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e-~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 259 VKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE-PELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 6666666554 222222 13456666666665554 22 2336766 45677766664322 2345678999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 210 FLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 210 ~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
||++.+..+|=-|.|.+..|+.... |.+.-+.+.+|..|. -+|--.||.-+.+-|-++
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk---terDvSirrravDLLY~m 396 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK---TERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHH
Confidence 9999999999999999999999643 777777777776665 566677777666666555
No 197
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=80.76 E-value=91 Score=33.95 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=57.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHh----cCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchh
Q 007424 166 RLERLLKSEVFKAKAAGLVVVGSVIG----SGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVP 238 (604)
Q Consensus 166 RL~klL~s~~~kaK~alLsaIGSiA~----ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~ 238 (604)
++++.+..++|.+-+-+...+..+.. +.+.| ...++.........|.++++-+|..++..||.|-..-. ....
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 35555555566554444443333331 11222 24566777777888888888888888888888775221 3333
Q ss_pred hhh--hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 EFK--GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 py~--~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
-|. ...++++-..=-||-|.||=-|.......
T Consensus 248 ~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 343 33455555555599999885444444433
No 198
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=80.40 E-value=1.1e+02 Score=34.59 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcC-------------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-------------PTLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~-------------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv 69 (604)
+...+-.+.+|.+.+..||.+..+..++-|.+..| ++...+|+..|. +++.+.--.+...++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~----~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN----RQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc----CCchhHHHHHHHHHHH
Confidence 34556678889999999999999999998888754 344566666553 4566777777777777
Q ss_pred HHhhh---cccccHHHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhh-ccchhHH--HHHHHHHHHccCC-ChhHHHHH
Q 007424 70 LSNSH---NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRV-GASAFVT--MLKLLSDALFTEQ-DTNAQVGA 141 (604)
Q Consensus 70 Lae~h---~i~p~L~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l-~d~~~~s--llkPL~eaL~~eq-dk~vQ~~A 141 (604)
+.... .-...++.++..+...|+.++ ......|+..+..|...= -+.-|.. .+++|+..|-... +...|--+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 74322 222356667778888887654 445666666665553321 0011111 6778888774322 44567788
Q ss_pred HHHHH--HHHhhcCCCChhhH--HHHHHHHHHHhcCC
Q 007424 142 ALCLA--ATIDAAQDPDAGKL--GRMEVRLERLLKSE 174 (604)
Q Consensus 142 A~cLa--alIE~a~d~i~~yL--~~L~~RL~klL~s~ 174 (604)
..|+= ++-+.+ .+.+ ..+++.|..+++..
T Consensus 208 ll~lWlLSF~~~~----~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 208 IFCIWLLTFNPHA----AEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred HHHHHHHhccHHH----HHhhccccHHHHHHHHHHhh
Confidence 88872 222111 1111 34777777777554
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.36 E-value=5.7 Score=37.07 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 82 KIINSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 82 kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+++..+++.| ...|+.+-..||.=+|.++.++..+.... =.+..+..|+.+.|+.|+.-|-.|+.+++-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666677777 33478899999999999999986532221 467888888889999999999999988763
No 200
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=79.66 E-value=1.5e+02 Score=35.68 Aligned_cols=241 Identities=15% Similarity=0.179 Sum_probs=120.4
Q ss_pred CChhHHHHHHHHHHHHHhh------cC-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----ccc--ccHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT------VD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLS--PYITKI 83 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~------L~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~--p~L~kI 83 (604)
.|.+.+.+++..|-.|... +. .+.+|.++.+|.+. +++.+..+.+-++-.|+... .+. .-|+.+
T Consensus 382 ~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~---~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L 458 (708)
T PF05804_consen 382 KDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN---SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSL 458 (708)
T ss_pred CCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC---CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHH
Confidence 4555666677777666553 22 23488888888764 23445555555444453333 221 124444
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~ 161 (604)
|... ++-.|+. ..+.+..++.|-.. ..|..|+.||...+..+.+.....-...+|+.+--. +.....++.
T Consensus 459 ~~ra---~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~ 530 (708)
T PF05804_consen 459 MKRA---LKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQ 530 (708)
T ss_pred HHHH---HhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHH
Confidence 4333 3333332 12344455555311 235559999999885433333333333333333211 112234565
Q ss_pred H--HHHHHHHHhcCCch--hHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHc-
Q 007424 162 R--MEVRLERLLKSEVF--KAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVE- 233 (604)
Q Consensus 162 ~--L~~RL~klL~s~~~--kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~- 233 (604)
+ ++|-|.++|..... .+--.++-.+|+++.-.. +..-+=..+++.|.+.|.. +|-+. .++.++.+-..+
T Consensus 531 ~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~---VlQil~~f~~ll~ 607 (708)
T PF05804_consen 531 EYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEI---VLQILYVFYQLLF 607 (708)
T ss_pred hCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHH---HHHHHHHHHHHHc
Confidence 4 88888888864422 122224446666663211 1110012356666666642 33332 344555444422
Q ss_pred -C---cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 234 -K---DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 234 -g---e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+ +.+. ...++...|=..--||.+.||..+..+|...-+
T Consensus 608 h~~tr~~ll-~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 608 HEETREVLL-KETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred ChHHHHHHH-hccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 2221 113344444444449999999999999988743
No 201
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=16 Score=37.66 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH---c
Q 007424 158 GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV---E 233 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~---~ 233 (604)
.||+....=|.+ ++++ .|-++..+...+- ..|+-..|.++++|.-|...|...|-++-..+..+|.-|... +
T Consensus 114 ~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl---~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 114 PYLPLFFDGLAE-TDHPYRFVARQGITDLLL---AGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred HHHHHHhhhhhh-cCCCcchhhhhcHHHHHH---hcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 445544444433 4555 6777777666554 334445699999999999999999999999999999988774 5
Q ss_pred CcchhhhhhHHHHHHHhcc-----------CcchhHHHHHHHHHHHHHHhCC
Q 007424 234 KDAVPEFKGKCLKIFESKR-----------FDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 234 ge~f~py~~~~i~~Le~cR-----------fDKvK~VRda~~~AL~~wK~i~ 274 (604)
|..+-||-.+.+.+|+..| |||--.+=|..++.|+.+-.-.
T Consensus 190 G~aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~G 241 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSG 241 (262)
T ss_pred chhhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcC
Confidence 6888898899999988765 6788888899999999885433
No 202
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.01 E-value=46 Score=40.42 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=102.2
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA-- 152 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a-- 152 (604)
.+.+..|+|+..+-+++.-.+++ -++-|+..|..+.|+..|.-| |-.++|.+
T Consensus 145 l~g~lgprv~~ll~rt~~~sasS-----------------------k~kkLL~gL~~~~Des~Qlea---l~Elce~L~m 198 (1051)
T KOG0168|consen 145 LFGRLGPRVLQLLHRTIGSSASS-----------------------KAKKLLQGLQAESDESQQLEA---LTELCEMLSM 198 (1051)
T ss_pred cccccchhHHHHhhhcccccchH-----------------------HHHHHHHhccccCChHHHHHH---HHHHHHHHhh
Confidence 55566677777777777655543 467778888666688777544 44555553
Q ss_pred -CCCChhh--HHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhc-CCcHHHHHHHHHH
Q 007424 153 -QDPDAGK--LGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLS-SQDWAARKAAAEA 225 (604)
Q Consensus 153 -~d~i~~y--L~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~--~lm~~L~e~L~-s~Dw~lRkaAaDa 225 (604)
.+..+.. +..+.|-|+++|++. +|.+-..+.-|+.=+..|-......+- ..||+|++.|. =+=..+=-++.+|
T Consensus 199 gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqA 278 (1051)
T KOG0168|consen 199 GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQA 278 (1051)
T ss_pred cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHH
Confidence 3333332 466999999999998 665554444444433333222111111 26788877664 2444555677888
Q ss_pred HHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 226 LWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 226 Lg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
|-.|.+.++..+-. ++.+..+|.=.-|=-+-.=|-|..-|-+..|+|+..
T Consensus 279 LE~iSR~H~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 279 LEKISRRHPKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred HHHHHhhccHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888766632221 122222222222444666677777777777777755
No 203
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.91 E-value=1.2e+02 Score=34.18 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHh--hcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHH
Q 007424 9 VNGLLNKLSDRDTYSQAAKELDSIAA--TVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (604)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~lA~--~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~ 86 (604)
++.+-.+-++.+-.+..++.||.++. .+|.+.++.++.-|+...... ...+.+-+++-.|+..| +=..++-.
T Consensus 181 i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~----~g~~~i~~ 254 (464)
T PF11864_consen 181 ICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH----LGHSAIRT 254 (464)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCc----cHHHHHHH
Confidence 33333444455555666777777766 567666777666666553332 44555556665555544 22333334
Q ss_pred HHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh--HH--H
Q 007424 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK--LG--R 162 (604)
Q Consensus 87 IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y--L~--~ 162 (604)
++.-|.+++.. ...+.++-.||...|..++-+.+..-.+. +. -
T Consensus 255 L~~iL~~~~~~---------------------------------~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 255 LCDILRSPDPQ---------------------------------NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred HHHHHcccCcc---------------------------------ccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 44444322221 01233445566666655555442222111 22 3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+++-|...|+.++..+-..++.++-.+.
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 7777777777665544444444454444
No 204
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.57 E-value=36 Score=39.28 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC-CC-hh
Q 007424 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD-KN-SA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD-pD-s~ 97 (604)
.+....+.|.-++--+..+. +.....-+.+ .+..|..=++++-.|..++. .+.|+=..+||.|++.+.. |. ..
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~--~~~~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAK--NVSPEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhc--cCCccccchHHHHHHHHhCCccchh
Confidence 44555555666666666665 6555555554 34456777788877776655 4456655566666665554 33 34
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHHh
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-EQDTNAQVGAALCLAATIDAAQDPD---AGKLGRMEVRLERLL 171 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~-eqdk~vQ~~AA~cLaalIE~a~d~i---~~yL~~L~~RL~klL 171 (604)
||.+++--+|.+++|+...| .++.|+...++. -+.+..+.+||.|...++....+.. .+++-.+..-+...+
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p--~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~ 519 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHP--ELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ 519 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999995543 356666666542 2455588899999999888754332 344444444433333
No 205
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=78.50 E-value=56 Score=36.40 Aligned_cols=198 Identities=16% Similarity=0.077 Sum_probs=112.8
Q ss_pred CchhHHHHHHHHHHHh-hh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---ch-hHHHHHHHHHH
Q 007424 57 PGVRKECIHVIATLSN-SH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SA-FVTMLKLLSDA 128 (604)
Q Consensus 57 p~~RKaaI~lLGvLae-~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~-~~sllkPL~ea 128 (604)
.-.|.+++.-+.+.+. -| +|.+.--.+...+.+-++-|.+-=...+.-.+|.++-.+.= .. ...-+.|++..
T Consensus 74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~l 153 (427)
T KOG2842|consen 74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLAL 153 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHH
Confidence 4679999988777644 33 77788778888889999999887666666666776666631 11 11133444444
Q ss_pred HccCCChhHH--HHHHHHHHHHHhhc-CCCChhhHHHHHHH-----HHHHhcCCc-----hhHHHHHHHHHH-----HHH
Q 007424 129 LFTEQDTNAQ--VGAALCLAATIDAA-QDPDAGKLGRMEVR-----LERLLKSEV-----FKAKAAGLVVVG-----SVI 190 (604)
Q Consensus 129 L~~eqdk~vQ--~~AA~cLaalIE~a-~d~i~~yL~~L~~R-----L~klL~s~~-----~kaK~alLsaIG-----SiA 190 (604)
++.+++..++ ..+|.||+-.+=.+ .+.+.-+.--+|-+ .. ++.... +.+-..++.|+. -.+
T Consensus 154 i~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti 232 (427)
T KOG2842|consen 154 ILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVY-LEDDETVVVCACQNLGLLLTCLTAWSLLLTI 232 (427)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-cccCCCccccccchhHHHHHHHHHHHHHHHc
Confidence 4456665554 46666665554333 33222222222222 22 333321 111122222222 222
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-cchhhhhhHHHHHHHhccCcc
Q 007424 191 GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 191 ~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g-e~f~py~~~~i~~Le~cRfDK 255 (604)
..............|.|-.+|..+.-..|.+|.+++..++.+. . +.+-|-.++++..|+.-.-|-
T Consensus 233 ~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latds 301 (427)
T KOG2842|consen 233 CPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDS 301 (427)
T ss_pred CccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhh
Confidence 1111000111224478888889999999999999999888744 2 566667788888888766653
No 206
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.04 E-value=22 Score=42.22 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=71.0
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..+...|.....+..|++||.+..+++-+-..+.-.-+=.-++..+...+.|+++.|-..|+-||..+.+.-.+.....
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 45555666666667778888888777776633330001122233344444668888887777777777776653211111
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
+.++++..|+.--+....-+-+..|+.+.+..+.+.. -+..+|.|+.-.|.|.
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~-ea~~i~~r~~p~Lqh~ 251 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSR-EAEDICERLTPRLQHA 251 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCch-hHHHHHHHhhhhhccC
Confidence 3333333333222334455556777777777655442 2233444444444333
No 207
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=77.89 E-value=14 Score=33.51 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhcCcCcCCch-HHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 161 GRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSGAVDGSGL-KGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 161 ~~L~~RL~klL~s~~----~kaK~alLsaIGSiA~ag~~f~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
+.++.-+.++|.... .....+++.++++.+.-.... ..+ ..+++.+..+|.+++. |.+|+|+|
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-LIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-HHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-HhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 444444555554432 456677888888877522111 001 1367777888866665 88899886
No 208
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=77.60 E-value=57 Score=42.03 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=114.0
Q ss_pred CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc-cHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhcc
Q 007424 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 38 pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p-~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d 115 (604)
.+.|+.||+....-..+.++.++..|..+|-.+=..+ .. +-+.|+..++.-+.. .++.| ++|+++|-.|+..-.+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f--ds~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF--DSYCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHH
Confidence 3468999998888888889888988888888875544 11 224444444444422 34445 7999999999986443
Q ss_pred --chhHHHHHHHHHHHccCCChhHHHHHHH---HHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH-HHHHHHHHH
Q 007424 116 --SAFVTMLKLLSDALFTEQDTNAQVGAAL---CLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA-AGLVVVGSV 189 (604)
Q Consensus 116 --~~~~sllkPL~eaL~~eqdk~vQ~~AA~---cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~-alLsaIGSi 189 (604)
.++..+++.+++.| +.-+. .|+...+ |.-++-+ .......-..|.--+-|.|.+++.+.|. .+|+|+.-+
T Consensus 507 ~l~~fa~~l~giLD~l-~~Ls~-~qiR~lf~il~~La~~~--~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 507 ELQPFATFLKGILDYL-DNLSL-QQIRKLFDILCTLAFSD--SSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HHHHTHHHHHGGGGGG-GG--H-HHHHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hcCCH-HHHHHHHHHHHHHhcCC--cccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 45667999999988 33222 3333222 2223333 1111223455666778999999888773 244433332
Q ss_pred HhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchhhhhhHHHHHHHhccCcc--hhHHHHHH
Q 007424 190 IGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIFESKRFDK--VKVVREVM 263 (604)
Q Consensus 190 A~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~py~~~~i~~Le~cRfDK--vK~VRda~ 263 (604)
-..+..... .+.... + -.+-.-..++.+...|..+-...+ +..+-|-+..-.++..+++|+ +.++-+.+
T Consensus 583 ~~la~~~~~-~~~~~~---~-~~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~~~~~~wi~~~i 656 (1426)
T PF14631_consen 583 KHLAAKNSE-SDSSSS---E-RSNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLDPKFLEWIGEHI 656 (1426)
T ss_dssp HHTT-----------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---HHHHHHHHHHH
T ss_pred HHHHHHhcc-CCcccc---c-cccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 233322110 000000 0 000112335566666665555433 566666688888888888776 34555554
No 209
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=76.64 E-value=84 Score=35.38 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCC-CCchhHHHHHHHHHHHhhh-
Q 007424 3 HALKTSVNGLLNKLSDR---DTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSH- 74 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDr---DT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~-kp~~RKaaI~lLGvLae~h- 74 (604)
++|=+.+++++.+=+.. .--|+-++.|-.+-..+-|-. +..|...+..-..+| ||..=-...-.+|.|.+..
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 45556666666663322 144555555544444443322 344444444333333 5555666667788874432
Q ss_pred -----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---ch-hHHHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 75 -----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SA-FVTMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 75 -----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
.+..+-+.++|.+..-|+..-.-.--=+.--+++|-+.... ++ +..+++||+..-+-+..-++ -+...-|
T Consensus 105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 45555666777666666543222222223344455554431 11 23377777776654544445 3334456
Q ss_pred HHHHhhcCCCCh--hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc-CcCCchHHHHHHHHhhhcCC-cHHHHH
Q 007424 146 AATIDAAQDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA-VDGSGLKGLVSCLLGFLSSQ-DWAARK 220 (604)
Q Consensus 146 aalIE~a~d~i~--~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~-~f~pyf~~lm~~L~e~L~s~-Dw~lRk 220 (604)
.++++-.+..+. +++..++..+-||+.+..... .....+.+++. ... ...||++.++..|...|.+. -....+
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~ 261 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVK 261 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 777777655553 688999999999998875332 34456777775 444 34599999999998888643 333344
Q ss_pred HHHHHHHHHHH
Q 007424 221 AAAEALWRLAV 231 (604)
Q Consensus 221 aAaDaLg~LA~ 231 (604)
.-+-.++.++.
T Consensus 262 ~fv~F~~~~~~ 272 (435)
T PF03378_consen 262 RFVVFLSLFAI 272 (435)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 210
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.39 E-value=88 Score=36.85 Aligned_cols=159 Identities=11% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~---~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
...++-+|+|++..+|-.||--|+--++.+.....+.. +..++.-|.+-++ +-++.|..-|.-||..+-|-..++-
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhccCChH
Confidence 44577899999999999999999999999999873211 1113334444443 6678899999999988877544322
Q ss_pred hhhHHHHHHHHHHHh-cCCchhHHHHHHHHHH-------HHHh----cCcCcC-CchHHHHHHHHhhh------------
Q 007424 157 AGKLGRMEVRLERLL-KSEVFKAKAAGLVVVG-------SVIG----SGAVDG-SGLKGLVSCLLGFL------------ 211 (604)
Q Consensus 157 ~~yL~~L~~RL~klL-~s~~~kaK~alLsaIG-------SiA~----ag~~f~-pyf~~lm~~L~e~L------------ 211 (604)
..+..-|.-++ +.|+..++.+++.-|. -|.. +.++.- -....++|.+.++=
T Consensus 168 ----n~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~e 243 (885)
T COG5218 168 ----NRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLME 243 (885)
T ss_pred ----HHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhh
Confidence 11222222223 4456667755443221 1110 111111 12235566664422
Q ss_pred ---cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 212 ---SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 212 ---~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
.+.+..+|++++|+|.. +...|.-...+++||
T Consensus 244 wgl~dRe~sv~~a~~d~ia~------~w~~~~d~~lveLle 278 (885)
T COG5218 244 WGLLDREFSVKGALVDAIAS------AWRIPEDLRLVELLE 278 (885)
T ss_pred hcchhhhhhHHHHHHHHHHH------HhcccccccHHHHHH
Confidence 24477889999998876 444444456677777
No 211
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.31 E-value=11 Score=40.75 Aligned_cols=86 Identities=22% Similarity=0.357 Sum_probs=59.3
Q ss_pred hhhcCCCCCCchhHHHH-HHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cch-hHHHHH
Q 007424 48 ILSTNSSDKPGVRKECI-HVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASA-FVTMLK 123 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI-~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~~-~~sllk 123 (604)
|-+...++.|++|++|+ .++|..+++. .+..+=.+.|+.|.+.++|+++ -+-++.|++.++..-. ... ...|++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k 85 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLK 85 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44556677889999999 7778877766 7888889999999999999999 3344566777666531 001 112666
Q ss_pred HHHHHHccCCCh
Q 007424 124 LLSDALFTEQDT 135 (604)
Q Consensus 124 PL~eaL~~eqdk 135 (604)
-|+.-+.+.+.+
T Consensus 86 ~l~~~~~~p~~~ 97 (353)
T KOG2973|consen 86 VLMDMLTDPQSP 97 (353)
T ss_pred HHHHHhcCcccc
Confidence 666666544443
No 212
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.15 E-value=5.9 Score=38.01 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+++-|+..+..+ .....||..+.-++.++- ...+..+...+...++.++.+.+..-...++.+|.++....++...+
T Consensus 4 ~l~~lL~~L~~~--~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDML--RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCT--TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhccc--CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445555555541 234568888888888883 22223455577788888875544445666777777777665432222
Q ss_pred hH--HHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHH-HHHHHHHHHHH
Q 007424 159 KL--GRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWA-ARKAAAEALWR 228 (604)
Q Consensus 159 yL--~~L~~RL~klL~--s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~-lRkaAaDaLg~ 228 (604)
.+ ..+++-+..+.. .++-....+++.+|.+...-..--.-..+..++.|.+.+. +++-. +|..|+-.|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 11 224555555665 6677788888888885442111111334556777888884 33333 67777766654
No 213
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.29 E-value=20 Score=43.71 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc------chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA------SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d------~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
+.+|+-..++.|.+++-.+|-++++.+.--...+.. +-.|.+++++++.+ ...|+-+-..|+.|+..|++-++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHHhh
Confidence 567888888999999999999999999887777765 23666999999999 56788888899999999999999
Q ss_pred CCChh-hHHHHHHHHHHHhcC
Q 007424 154 DPDAG-KLGRMEVRLERLLKS 173 (604)
Q Consensus 154 d~i~~-yL~~L~~RL~klL~s 173 (604)
|-+.. .+..++|++-.++..
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 87743 566677777766643
No 214
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=73.88 E-value=1.1e+02 Score=41.34 Aligned_cols=114 Identities=10% Similarity=0.124 Sum_probs=77.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--- 115 (604)
...+-+.+.....+-+...=+-+...+|.++.++ +-+......+-.++..+.+-.-.=|.|++.-+..++.+..-
T Consensus 91 ~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~ 170 (2341)
T KOG0891|consen 91 ISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFY 170 (2341)
T ss_pred hHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHH
Confidence 3444444433333335555556667777777767 66667777777788777444444578888888888888632
Q ss_pred chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 116 ~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
+.++.|++.++.++ -+++++++..||+||.++.-++.+.
T Consensus 171 ~~~~~~~~~i~~~~-~~~~~~i~~~a~~al~~~~~~~~~~ 209 (2341)
T KOG0891|consen 171 PYVNKFFKNIFAAL-RDPKPAIRLQACSALHAVLSSLAQR 209 (2341)
T ss_pred HHHHHHHHHHHHhc-cCCChhhhHHHHHHHHHHHhhhhhc
Confidence 22444777777777 4788999999999998887775443
No 215
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.82 E-value=42 Score=39.81 Aligned_cols=127 Identities=12% Similarity=0.152 Sum_probs=88.1
Q ss_pred HHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 32 IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 32 lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
+-.++..+.=+.|++.|.+|.-+. ....++.+|+..- .||=..++..|..-+..+. -|-.++.-||.|..
T Consensus 28 ~~~~~~~~~~~~l~~~l~~y~~~t------~s~~~~~il~~~~--~P~~K~~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~ 97 (668)
T PF04388_consen 28 LQELLNSDREPWLVNGLVDYYLST------NSQRALEILVGVQ--EPHDKHLFDKLNDYFVKPS--YRLQALTLLGHFVR 97 (668)
T ss_pred HHHHhhccchHHHHHHHHHHHhhc------CcHHHHHHHHhcC--CccHHHHHHHHHHHHcCch--hHHHHHHHHHHHHh
Confidence 344456665566677776663322 2345556665443 6777778888888887664 55555555555544
Q ss_pred hhccch-------hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 112 RVGASA-------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 112 ~l~d~~-------~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
. +| .+.+++-|+..|..|.+..+-..|.+||-.++=-.+..+.+||+.|+.=+..++
T Consensus 98 ~---qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 98 S---QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred c---CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 3 33 222777888888778888899999999999999888888899999888877777
No 216
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.37 E-value=2.2e+02 Score=34.43 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=71.5
Q ss_pred HHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhcc-CCChhHHH
Q 007424 28 ELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFR-DKNSALQA 100 (604)
Q Consensus 28 eLD~lA~~L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLk-DpDs~VR~ 100 (604)
|.-.+|-++|++. +..-+.+|.+..++-.+..|--++--+..||..- .+..|.+ .|+..|+ +.|.+||+
T Consensus 312 eaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d----~Ii~sLkterDvSirr 387 (938)
T KOG1077|consen 312 EAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQD----TIINSLKTERDVSIRR 387 (938)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHH----HHHHHhccccchHHHH
Confidence 4566888898877 7888999999999888899988887777775433 5555644 6777888 99999999
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 101 TCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 101 Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
-+++-|=.|++.- .-..++.-|+.+|
T Consensus 388 ravDLLY~mcD~~---Nak~IV~elLqYL 413 (938)
T KOG1077|consen 388 RAVDLLYAMCDVS---NAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHHHhchh---hHHHHHHHHHHHH
Confidence 9999999888763 2112455555555
No 217
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.72 E-value=1.1e+02 Score=36.89 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCC--hhhHHHHHHH----HHHHhcCCchhHHHHHHHHHHHHHh-
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPD--AGKLGRMEVR----LERLLKSEVFKAKAAGLVVVGSVIG- 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--~d~i--~~yL~~L~~R----L~klL~s~~~kaK~alLsaIGSiA~- 191 (604)
+++|++--=+.-.|.+||..||.- ++|.- .++. .+-...+|++ |.++|+++-..++..++--+.-+..
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~l---f~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~ 250 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALL---FVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK 250 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHH---HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 555554332245577788777654 44442 2222 2444445554 7899999977777554443332221
Q ss_pred cCcCcC-CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 192 SGAVDG-SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 192 ag~~f~-pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
-=...+ -.+..+|..+.+-+. +.-..+|-+..+.|..|+...- . -|..+..++.|.-.-.||+-.||=||.++|-.
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-s-h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-S-HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc-c-hhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 101111 223344555555554 3456999999999999887421 1 12335557777777779999999999999888
Q ss_pred HHhCCCC
Q 007424 270 WKQVPDL 276 (604)
Q Consensus 270 wK~i~~~ 276 (604)
+|.+...
T Consensus 329 ik~vra~ 335 (1005)
T KOG1949|consen 329 IKAVRAA 335 (1005)
T ss_pred HHhhhhh
Confidence 8876644
No 218
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=72.45 E-value=6.8 Score=28.74 Aligned_cols=28 Identities=36% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
.||.|.++|.+.+-.+|+.|+.+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677777777777777777777777765
No 219
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.00 E-value=4.7 Score=28.67 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhh
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLS 110 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LA 110 (604)
.++.+++.|+.++..|+..|+++|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566777777888999999999999886
No 220
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.16 E-value=1.2e+02 Score=39.16 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhh-cCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCC
Q 007424 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILS-TNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e-~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpD 95 (604)
+..+|+-..+.++....... .+.|+..+.. +..+..+.+|-+.+.-+-.+.=.+ +..++.+.|.-.+.+.|.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 77888888899999886555 7888888873 334445677777666555554333 446678899999999999999
Q ss_pred hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHH-HHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ-VGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ-~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
-.||.-++.+|.-|-..---.-...--++....+.......++ -||+..|.++|=+.+......+++.+.-+..
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~ 1657 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSS 1657 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHh
Confidence 9999999999887754421100001123333333222222233 4788999999988877654444444333333
No 221
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=70.95 E-value=5.9 Score=27.09 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
||.+|.++||.+.+. ..+++|+++|
T Consensus 1 VR~~Aa~aLg~igd~-------~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDP-------RAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SH-------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH-------HHHHHHHHHh
Confidence 799999999999885 4688888877
No 222
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.73 E-value=42 Score=42.52 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc-HHHHHHHHHhhccCCChhHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY-ITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~-L~kIl~~IvrrLkDpDs~VR 99 (604)
-.+.|...+..+|.++-+.-=..|.+++..+.+..- . -.+....++-+.+.++|+ |--++|.+..-|.-.+-.+|
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~-~---~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~R 276 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQS-S---LKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVR 276 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccccc-c---hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHH
Confidence 567788888889988887666778888887765222 2 234455566666666676 78899999999999999999
Q ss_pred HHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch
Q 007424 100 ATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF 176 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~ 176 (604)
--|...+|.|-......-+ .-.+|++.+.++ +....|.....-+.--.+-+-++ ....+..-+.......++
T Consensus 277 l~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~----~~~~~~~~~~l~~~~~D~ 351 (1266)
T KOG1525|consen 277 LKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS----IAKASTILLALRERDLDE 351 (1266)
T ss_pred HHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch----hhhHHHHHHHHHhhcCCh
Confidence 9999999988665432111 124455555542 44444443333222222222111 111111112222222233
Q ss_pred hHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH-------HcCc-chhhhh------
Q 007424 177 KAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV-------VEKD-AVPEFK------ 241 (604)
Q Consensus 177 kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~-------~~ge-~f~py~------ 241 (604)
.++-....+|.. ..-..| ..|.+.++..+.+.+.+--|.+|+.|+..|..+=. +.+. .-.+|-
T Consensus 352 ~~rir~~v~i~~--~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kL 429 (1266)
T KOG1525|consen 352 DVRVRTQVVIVA--CDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKL 429 (1266)
T ss_pred hhhheeeEEEEE--eehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhH
Confidence 333221111110 001122 25555578888888889999999999999987765 1222 222221
Q ss_pred ------------hHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 242 ------------GKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 242 ------------~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..+..+|..+=|.---.+++.|..-++++..
T Consensus 430 L~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 430 LHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 2223455555666666677777777666643
No 223
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.91 E-value=15 Score=42.72 Aligned_cols=80 Identities=23% Similarity=0.195 Sum_probs=67.5
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCC
Q 007424 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSE 278 (604)
Q Consensus 199 yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~ 278 (604)
+..+++..+..++.+.|-.+|+-.++.|+.+...+|+.=....+..+..|.++=||+-|.||--|..+|-.+++..+..+
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 44566677777788899999999999999999999864444557778899999999999999999999999998877654
No 224
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=69.64 E-value=8.8 Score=34.03 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhh
Q 007424 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS 110 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LA 110 (604)
..|-++|+.|+.++..+ .+-|+||++|..+.+...|| ..|+..+-++++.+=
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-QPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Confidence 35778889999998888 77789999999999999984 457878777777663
No 225
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.31 E-value=1.1e+02 Score=36.79 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=96.1
Q ss_pred HhhhhcCCCCCCchhHHHHHHHHHHHh--h---h--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--c
Q 007424 46 SCILSTNSSDKPGVRKECIHVIATLSN--S---H--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--S 116 (604)
Q Consensus 46 ~~L~e~~ss~kp~~RKaaI~lLGvLae--~---h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~ 116 (604)
.||.-...-.+..+|-.|..+|=.+-- + | .+..-|++=.-.+.+.|+|+-+.||..+...+-.+-...=+ +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 455556777788899888877655411 1 1 22333455555778899999999999998887766544322 2
Q ss_pred h--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 117 A--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 117 ~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+ ...+++-+++-|..+....|..+.+-||--+..+ ....+.|..++|++--+|..++-+++-|.+..|.-|-.
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2 2226777777775444445666666666666553 33357788889999999988899999888877665443
No 226
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.52 E-value=42 Score=33.07 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
..++.+++++++.-+++.+++-+++..|+.+..-|=.. | ..++|.|+-..++++-.+|+.|...+..+..-.+..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-P--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-h--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 45778888999999999999999999999988766433 2 36889999988999999999999999988775443322
Q ss_pred hhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 239 EFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 239 py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
. ..-+.+..|.+.-+.+.+.
T Consensus 82 ~------------------~~~~gi~~af~~~~~l~~~ 101 (187)
T PF12830_consen 82 S------------------RYSEGIRLAFDYQRRLSSD 101 (187)
T ss_pred H------------------HHHHHHHHHHHHHHHhcCC
Confidence 1 1344566677777766654
No 227
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.49 E-value=1.1e+02 Score=40.26 Aligned_cols=199 Identities=16% Similarity=0.104 Sum_probs=125.4
Q ss_pred cCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh-HHHHHHHHHHhhhhhh
Q 007424 36 VDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA-LQATCISTVSSLSPRV 113 (604)
Q Consensus 36 L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~-VR~Ac~~aLg~LAe~l 113 (604)
+.|+.+ ..-+.++......++|-.|=++..++|.++-..--.|++..+...++++|++.+.. -|---.-++|.+=.|.
T Consensus 868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv 947 (2067)
T KOG1822|consen 868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV 947 (2067)
T ss_pred cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 345553 44455556667788999999999999999877766788999999999999996655 4666778899998887
Q ss_pred ccc--hhHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-chh--HHHHHHHH-
Q 007424 114 GAS--AFVT-MLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFK--AKAAGLVV- 185 (604)
Q Consensus 114 ~d~--~~~s-llkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-~~k--aK~alLsa- 185 (604)
... ..|- -.--++.+|..|. .|.||..+-.+|+-++|.......-|....+--+.++|-+. .+. +....=.+
T Consensus 948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 541 1221 1122445554554 55899999999999999876555455555555555555332 222 22221112
Q ss_pred -----HHHHHh-cCcCcCCch---------HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 186 -----VGSVIG-SGAVDGSGL---------KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 186 -----IGSiA~-ag~~f~pyf---------~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
++.++. +|....|-+ ..++-...=.+..+|--...+|+.+|.-+.....
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFap 1091 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAP 1091 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcc
Confidence 223442 444433222 2222222222345677788899999999888543
No 228
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.31 E-value=1.9e+02 Score=31.65 Aligned_cols=249 Identities=16% Similarity=0.099 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHHHHHhh---cCC-----CChHHHHHhhhhcCCC-------CCCchhHHHHHHHHHHHhhh----ccc
Q 007424 17 SDRDTYSQAAKELDSIAAT---VDP-----TLLPTFLSCILSTNSS-------DKPGVRKECIHVIATLSNSH----NLS 77 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~---L~p-----e~ip~fL~~L~e~~ss-------~kp~~RKaaI~lLGvLae~h----~i~ 77 (604)
+||+.+-=|...|-..-+. +|. ++++.|++++.....+ .+...--+|+++||.+-.-- .+.
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 3666666666666554433 222 2367788877554443 35566789999999985422 222
Q ss_pred c-cHHHHHHHHHhhccCCChh--HHHHHHHHHHhhhhhhccchh-HH-HHHHHHHHHc--cC--CChhHHHHHHHHHHHH
Q 007424 78 P-YITKIINSITRNFRDKNSA--LQATCISTVSSLSPRVGASAF-VT-MLKLLSDALF--TE--QDTNAQVGAALCLAAT 148 (604)
Q Consensus 78 p-~L~kIl~~IvrrLkDpDs~--VR~Ac~~aLg~LAe~l~d~~~-~s-llkPL~eaL~--~e--qdk~vQ~~AA~cLaal 148 (604)
. +...++-..+..|.++... +..++.+ .|+..=..+.+ .. ...-|+.++. .+ +..++...+..++.++
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~---~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLW---CLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 2 2334788888888887752 3333333 33333221111 11 4444555443 12 4567888999999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcCc----------Cc------CCchHHHHHHHHhh
Q 007424 149 IDAAQDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGA----------VD------GSGLKGLVSCLLGF 210 (604)
Q Consensus 149 IE~a~d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~ag~----------~f------~pyf~~lm~~L~e~ 210 (604)
++..+.........=+|-++..+=+. ....++..++..... ..+. .+ .-|.+.+.+.|...
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~m 240 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK-CLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEM 240 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HhChhHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 99877655444333333333333222 233332222211111 1111 11 02334445556665
Q ss_pred hcC-CcHHHHHHHHHHHHHHHHHcCcc---hhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 211 LSS-QDWAARKAAAEALWRLAVVEKDA---VPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 211 L~s-~Dw~lRkaAaDaLg~LA~~~ge~---f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
+.+ ++. +.|.+..+.+-...|.. --+|.+.-+.+.|.|=-..-+.||-. |+.+||.+-.
T Consensus 241 i~~~~~~---~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~---A~~aW~~liy 303 (372)
T PF12231_consen 241 IKSKDEY---KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQ---AFKAWRRLIY 303 (372)
T ss_pred HhCcCCc---chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHH
Confidence 555 332 34777777777766632 22356788999999988988899955 6777888764
No 229
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.69 E-value=7 Score=27.74 Aligned_cols=28 Identities=36% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
.++.|.++|.+++..+++.|+.+|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777889999999999999876
No 230
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=67.41 E-value=2.2e+02 Score=32.12 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCCCh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDKNS 96 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~-~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDpDs 96 (604)
++-.|++.|=.+...++.+.+..++. .|..+..+.-...|--+-+.+..-|... ...+. .+.+.+.+..-|.++.+
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~ 182 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP 182 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence 66778888888999998888777776 4777777777778888888888777766 33333 36677777777876652
Q ss_pred -----------hHHHHHHHHHHhhhhhhc
Q 007424 97 -----------ALQATCISTVSSLSPRVG 114 (604)
Q Consensus 97 -----------~VR~Ac~~aLg~LAe~l~ 114 (604)
.||.-|..=+..+.++..
T Consensus 183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 183 PYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 256666666666666553
No 231
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.95 E-value=2.8e+02 Score=36.27 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHhhhcccccH-HHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccC
Q 007424 59 VRKECIHVIATLSNSHNLSPYI-TKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTE 132 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h~i~p~L-~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~e 132 (604)
..+.++.+.+.++.. .+.+|+ +.++..+.....|+.+ .||.|.+.=+..+.-.-+-. ....+-+-++.+| .+
T Consensus 1503 a~~~a~~~~~lm~~~-~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l-~D 1580 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLS-WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL-ND 1580 (1710)
T ss_pred HHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH-cc
Confidence 334444443333332 555654 4455555545556554 69999666555444332211 1112566666666 56
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHH
Q 007424 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK---SEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLL 208 (604)
Q Consensus 133 qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~---s~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~ 208 (604)
.+..+..-||-||+.++.+..-.... ..-.++.+-+. .+-.++..|++ .+|+++-+-. .++-+++..+..|.
T Consensus 1581 ~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~Hgavl-gLgA~VlafPy~vP~wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1581 DQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVL-GLGAIVLAFPYVVPLWIPKPLMNLS 1656 (1710)
T ss_pred hHHHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHH-HHHHHHHhccccchhhhHHHHHHHH
Confidence 66679999999999999986433222 11111111111 11223333333 3444443321 11223333344444
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 209 GFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 209 e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
.|..+. -+++.++-.++...-+...|.+...
T Consensus 1657 ~fa~e~-~~i~~tvkktvseFrrth~D~W~~~ 1687 (1710)
T KOG1851|consen 1657 SFARES-AAIKQTVKKTVSEFRRTHADTWREH 1687 (1710)
T ss_pred hhcCCc-hHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444433 6677777788877777666655544
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.71 E-value=71 Score=39.79 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccch----hHHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASA----FVTMLKLLSD 127 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~----~~sllkPL~e 127 (604)
.+.+|-=|.-.|++++.++ --+-.=..+|.+...-|.| +++-+|+=+|-.||.|=+...... ......-|+.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 3577888888899998888 1111234567777888888 579999999999999987775421 1113444555
Q ss_pred HHccCCChhHHHHHHHHHHHHHhhc
Q 007424 128 ALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 128 aL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
.| .|+-+.|..+|..||..++.+.
T Consensus 650 ~L-sD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 650 LL-SDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred Hh-cCccHHHHHHHHHHHHHHhccc
Confidence 55 5777889999999999999874
No 233
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=66.63 E-value=39 Score=38.31 Aligned_cols=135 Identities=18% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----cc-cccHHHHHHHHHh-hccCCChhHHHHHHHHHHhhhhhhc
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NL-SPYITKIINSITR-NFRDKNSALQATCISTVSSLSPRVG 114 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i-~p~L~kIl~~Ivr-rLkDpDs~VR~Ac~~aLg~LAe~l~ 114 (604)
|.||..+.+...|.+...--.+.+++|..++-- ++ ...+.|+|..+.+ .--|.+..+++||+-||..|+=..+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 558888888888888888889999999997644 33 2358899999988 7778888899999999999876554
Q ss_pred cc-hhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh--HHHHHHHHHHHhcCCchh
Q 007424 115 AS-AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK--LGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 115 d~-~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y--L~~L~~RL~klL~s~~~k 177 (604)
.. .+.. +..-++..|--++- .++-.--.-|-.++++-++...+. =+++.+||..--++++|.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~p-pv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASP-PVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred chhhccccchHHHHHHHHHhcCC-cchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 21 0110 22222222211223 344333333444444322111111 155777777777777665
No 234
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.52 E-value=15 Score=41.16 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcC
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s 173 (604)
+++||++.+-.|++...|..+|.+|+.+|+-....-..--.||+-.|+.+|-.
T Consensus 313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~ 365 (441)
T PF12054_consen 313 IIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCV 365 (441)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhcc
Confidence 89999999988889999999999999999986533333347888888888843
No 235
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=66.30 E-value=51 Score=39.61 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHh---hc--CCCChHHHHHhhhhc--CCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhc
Q 007424 21 TYSQAAKELDSIAA---TV--DPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF 91 (604)
Q Consensus 21 T~r~A~~eLD~lA~---~L--~pe~ip~fL~~L~e~--~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrL 91 (604)
...+++--++.+++ -. .+..||.+|.++.+. ..+.+-.+|.-+--+|-..+..- .+.|++++|+.-|...|
T Consensus 506 h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 506 HELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred chHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655 23 344489999888766 45666788888887887776665 78899999999888888
Q ss_pred cCCCh
Q 007424 92 RDKNS 96 (604)
Q Consensus 92 kDpDs 96 (604)
..+-+
T Consensus 586 ~~~vt 590 (980)
T KOG2021|consen 586 HIKVT 590 (980)
T ss_pred cCcCC
Confidence 54433
No 236
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=2.3e+02 Score=31.53 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=99.8
Q ss_pred CChhHHHHHHHHHHHHHh------hcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----cccc-cHHHH
Q 007424 17 SDRDTYSQAAKELDSIAA------TVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSP-YITKI 83 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~------~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i~p-~L~kI 83 (604)
-|.|..-.+...|..||- .+.... +..++.||.++..+.+-..-|.|+.+|-.|+..- ++.. -+++|
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHH
Confidence 478877666666666653 454444 9999999998766544345588888888886544 3322 37888
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-------HHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCC
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-------MLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-------llkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
+....+-+.|| .|-++.+-.+..|+-. .|.|+ .-...+.+|-.+ +...+|.-||+.+-.++-.....
T Consensus 334 i~l~~~h~~~p--~Vi~~~~a~i~~l~LR---~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 334 ITLALRHSDDP--LVIQEVMAIISILCLR---SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHcCCCh--HHHHHHHHHHHHHHhc---CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 88888877544 4555555555555544 33332 233445566433 45679999999887776553333
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
-...|..=.+.|+..-+..+--+..++-.|+.
T Consensus 409 ~~~~l~~GiE~Li~~A~~~h~tce~~akaALR 440 (461)
T KOG4199|consen 409 RTILLANGIEKLIRTAKANHETCEAAAKAALR 440 (461)
T ss_pred cchHHhccHHHHHHHHHhcCccHHHHHHHHHH
Confidence 33444444445554444444445544444444
No 237
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.88 E-value=1.7e+02 Score=35.42 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=79.8
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHH
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~ 86 (604)
++.+.++-|.+|..-.-+-+.-|-.|. ...-.-+.-+.--+....++++-.+|+.++-..=-|++.| .+..|+.+
T Consensus 282 ~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----Nvediv~~ 356 (948)
T KOG1058|consen 282 STYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----NVEDIVQF 356 (948)
T ss_pred HHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----cHHHHHHH
Confidence 456666777776665554444333333 1111113333333344567788889999997666677766 34556666
Q ss_pred HHhhccC-------CChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 87 ITRNFRD-------KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 87 IvrrLkD-------pDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
+.+.+.+ .+..-|+.-.+++...|-.. +...+ .++-|++.| ++.+.....+.-.=+-.++|..+
T Consensus 357 Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F--p~~aatvV~~ll~fi-sD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 357 LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF--PEVAATVVSLLLDFI-SDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhCc
Confidence 6665543 34457999999999888776 33333 777788888 55554322222222344445443
No 238
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=1.6e+02 Score=35.92 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcC----
Q 007424 80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQ---- 153 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~---- 153 (604)
-..-++.+|.|+..+.- .=|++|+.+|-.++..+-......=++||+..|-.| .|+.+-..+---|.-++-.-+
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 34455667777754432 349999999999999985433333799999999654 355444333222233332211
Q ss_pred --CC-----ChhhH-------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcC---cCCchHHHHHHHHhhhcCCc
Q 007424 154 --DP-----DAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV---DGSGLKGLVSCLLGFLSSQD 215 (604)
Q Consensus 154 --d~-----i~~yL-------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~---f~pyf~~lm~~L~e~L~s~D 215 (604)
+. ....+ +..+.-++..++..+|++|-+.+..|.++..- +-. ..-.++.-|..|.+.|.+.-
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 11 01112 23555678888999999999999999988752 322 22445567888888888888
Q ss_pred HHHHHHHHHHHHHHHHHcC--c---chhhhhhHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhCCC
Q 007424 216 WAARKAAAEALWRLAVVEK--D---AVPEFKGKCLKIFESKR-FDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 216 w~lRkaAaDaLg~LA~~~g--e---~f~py~~~~i~~Le~cR-fDKvK~VRda~~~AL~~wK~i~~ 275 (604)
-..|-.|+-.|..+...-+ + +|...-++...++|+-- .|==-.|-|.+.-...++|.-..
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 9999999999999887544 2 44444466677777655 78777889999999999987543
No 239
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=64.12 E-value=12 Score=28.31 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 185 aIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
+|+.++..-.... .-+.++..+...|.+++..+|++|.|.|
T Consensus 2 ~l~~iv~~dp~ll-~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL-DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc-chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3555554433322 1236788899999999999999999875
No 240
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=63.84 E-value=11 Score=33.34 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhH
Q 007424 213 SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~ 258 (604)
+++|++|..|++.|+.|....++.....+.++++.|-..=+|.-|+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~ 62 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKP 62 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCC
Confidence 5789999999999999999888666666666777766665666553
No 241
>PRK14707 hypothetical protein; Provisional
Probab=63.47 E-value=5.3e+02 Score=35.15 Aligned_cols=248 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHH-------HhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----c
Q 007424 8 SVNGLLNKLSDRDTYSQAAKELDSI-------AATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----N 75 (604)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~l-------A~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~ 75 (604)
.++..|.|=.|.+..+.|+..|... ...|...+|+.+++.|+ |++.+.+|..++..|+.-. .
T Consensus 545 ~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS------KWP~~~aC~~Aa~~LA~~l~~~~~l 618 (2710)
T PRK14707 545 NTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS------KWPDTAVCAEAVNALAERLVDEPDL 618 (2710)
T ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc------cCCCcHHHHHHHHHHHHHhccChhh
Confidence 3566777878888888888777654 23466666888888887 4455556666655554443 2
Q ss_pred ccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccc-----hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007424 76 LSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGAS-----AFVT-MLKLLSDALFTEQDTNAQVGAALCLAAT 148 (604)
Q Consensus 76 i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~-----~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaal 148 (604)
...+-++=+..++..|.- |+. .+|..++..|+.++..- .|.. =+..++.+|..=.+..+-..|+.+|+..
T Consensus 619 r~~l~~q~lan~lNALSKWP~s---~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~r 695 (2710)
T PRK14707 619 RKELDPVDVTNVLNALSKWPGT---EVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAER 695 (2710)
T ss_pred hhhccHHHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Confidence 233345556666666633 554 58889999998887431 1222 4677778884324555666788888766
Q ss_pred HhhcCCCCh----hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc---CcCcC-CchHHHHHHHHhhhcCCcHHHHH
Q 007424 149 IDAAQDPDA----GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS---GAVDG-SGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 149 IE~a~d~i~----~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a---g~~f~-pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+..-+..-. +-+..++.-|.|.-.. ..++.++...-+-++.- -.+|. +.+.+++..|...- ++-.-|+
T Consensus 696 La~~~~Lr~al~pQ~vAN~LNALSKWP~~--~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANaLNALSKWP--d~~~C~~ 771 (2710)
T PRK14707 696 LAADPGLRKELNPVDVANALNALSKWPRT--PVCAAVASALAARVVAEPRLRKAFDAQQVATALNALSKWP--DNQACAA 771 (2710)
T ss_pred HhcChhhHhhcCHHHHHHHHhhhhcCCCc--HHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHhhcCC--CchHHHH
Confidence 655222111 2233333334444333 33444444444443321 12233 33334444443311 1112233
Q ss_pred HHHHHHH-HHHHHcC--cchhh-hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 221 AAAEALW-RLAVVEK--DAVPE-FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 221 aAaDaLg-~LA~~~g--e~f~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+| ++|. .++...+ ..|.| ....+++.|. |-+.-.+...-|+.+...|.
T Consensus 772 AA-~aLA~rLa~~~~Lr~aL~pQ~vAn~LNALS-----KWPe~~~Cr~AA~~LA~rLa 823 (2710)
T PRK14707 772 AA-NTLAERQLREPDVRDVLKPREMTNALNALS-----KWPDTPACAAAASALAARVA 823 (2710)
T ss_pred HH-HHHHHHHhhCcchhhhcCHHHHHHHHHHhh-----cCCCchHHHHHHHHHHHHHh
Confidence 33 3333 3444322 34444 4577788876 54444444444555555554
No 242
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.72 E-value=3.6e+02 Score=35.95 Aligned_cols=242 Identities=15% Similarity=0.155 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHHHh-------hcCCCChHHHHHhhhhcCCCCCCchhHHHHHH-----------HHHHHhhh---cc
Q 007424 18 DRDTYSQAAKELDSIAA-------TVDPTLLPTFLSCILSTNSSDKPGVRKECIHV-----------IATLSNSH---NL 76 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~-------~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~l-----------LGvLae~h---~i 76 (604)
++-.-..|+..||.-.+ ++++..-..++..+.++..+.|.. |+.++.+ |+.+++.- .+
T Consensus 790 ~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~e~~~~~~l 868 (2067)
T KOG1822|consen 790 VPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLAEFKGATSL 868 (2067)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 44444555666665333 234433455567777777776766 6665543 33333322 23
Q ss_pred ccc-HHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 77 SPY-ITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 77 ~p~-L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
.|+ +.+ .+..++..|--+++..|=++.+++++|+....+++|.. ..+.+|+-|-.-.++....+-.+||.-+-...+
T Consensus 869 g~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg 948 (2067)
T KOG1822|consen 869 GPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG 948 (2067)
T ss_pred CHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 332 112 23356677888999999999999999999998888766 999999999766788777777777766555433
Q ss_pred CCC-hhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCC---cHHHHHHHHHHH-
Q 007424 154 DPD-AGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQ---DWAARKAAAEAL- 226 (604)
Q Consensus 154 d~i-~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~---Dw~lRkaAaDaL- 226 (604)
... .+.+..=..-|+.+-..+ ...++.-.|-++.-++. .|.-+.-|.+.++..+...|-+. .-+++..---++
T Consensus 949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen 949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc
Confidence 222 234444333344444444 33677777777766665 34555567777777666666432 222222221122
Q ss_pred -----HHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 227 -----WRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 227 -----g~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.+-+.+|+.+.| +.+-|+++-+|...+-+.-+.
T Consensus 1029 ~~~~~~alittlgpeL~~----------N~~~d~t~~~rts~la~~all 1067 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGP----------NGDKDSTSTLRTSCLAACALL 1067 (2067)
T ss_pred cchhHHHHHHhcccccCC----------CCcccchhHHHHHHHHHHHHh
Confidence 2444444443333 123357888887766555444
No 243
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.13 E-value=44 Score=40.13 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHH
Q 007424 45 LSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKL 124 (604)
Q Consensus 45 L~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkP 124 (604)
|..|++++. +..++.-+.+.|+.|...+-.+|--.+-+.+|..|+-=.+..||.||+-+|..++..- .....++..-
T Consensus 431 L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l~~sI~vl 507 (865)
T KOG1078|consen 431 LEHLCEFIE--DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VVLLPSILVL 507 (865)
T ss_pred HHHHHHHHH--hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCccccHHHH
Confidence 445555544 2356666777777776666555555566666677766667777777777777776111 0001112222
Q ss_pred HHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 125 LSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 125 L~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
|.-.+ .+++-.+...|..+|..+-+.
T Consensus 508 lkRc~-~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 508 LKRCL-NDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred HHHHh-cCchHHHHHHHHHHHHHhhhh
Confidence 22222 355556666666666555543
No 244
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.72 E-value=1.2e+02 Score=33.79 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=93.9
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc-CcCC
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA-VDGS 198 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~-~f~p 198 (604)
.++=|+.-| .+.+-++..-|-+-|..++-+-++.+...+..|.+++..++-..++.++.+++.++-.++- ++. .-.|
T Consensus 59 tlkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455555556 4556566666666666665552232334678899999999999999999998888877663 443 3459
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHH
Q 007424 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK 246 (604)
Q Consensus 199 yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~ 246 (604)
.+..+|+++.-.++.---+.|.-++-.|..++...++.|.-++..+++
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~ 185 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILE 185 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999999999999889999999999999999999888877655443
No 245
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=60.62 E-value=47 Score=32.80 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHHHhc------------------CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHH
Q 007424 156 DAGKLGRMEVRLERLLK------------------SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~------------------s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
+.++|+.|+|.++.-+. .++..+|.++.+++-++......-.. +..++..+..-|.+ +..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~-~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID-ISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS--HHHHHHHHHHTTSS--HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHhhcCC-cHH
Confidence 45788889999885543 23455999999999998864322222 34557777777877 999
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc-----cCcchhH-------HHHHHHHHHHHH-HhCCCC
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK-----RFDKVKV-------VREVMNKMIEAW-KQVPDL 276 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c-----RfDKvK~-------VRda~~~AL~~w-K~i~~~ 276 (604)
.|-.+..+|..++...++.+.+..+..++.|+.- +-+-||. ---++.+++..+ +.+++.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~ 152 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGA 152 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999866544444434333333321 2233333 333445555555 555544
No 246
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.60 E-value=87 Score=29.29 Aligned_cols=69 Identities=19% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCC-chh---HHHHHHHHHHHHHh
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSE-VFK---AKAAGLVVVGSVIG 191 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~-~~k---aK~alLsaIGSiA~ 191 (604)
++-|-.-| .+.++++|.-|..-|+.++.+.++.....+ .+.+..|.+++... ... +|.-++..|..-+.
T Consensus 44 ~~~l~krl-~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRL-KHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHH-TTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 33344444 568899999999999999999876443222 34778889988755 333 78888888887665
No 247
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=60.37 E-value=1.2e+02 Score=32.76 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=92.3
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh-hh-cccc
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSN-SH-NLSP 78 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae-~h-~i~p 78 (604)
+=+|+-|||+---=.--++-|++.-+.|=+.+.++. ++.++.=|.+..+.....+|...+.++..--- .- .+.|
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 345666666654444467778888887777776665 45565656665555556788888887776421 11 7779
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHH
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAA 142 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA 142 (604)
.++-|+..+.-+|.|..+-+.+-+...+-.+...+.+ ..|+.-++.++. .++.+..+|-
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---~~F~~~lwl~ii--~sp~~Rl~al 193 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---KYFWQCLWLCII--TSPSRRLGAL 193 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHh--cCcchhHHHH
Confidence 9999999999999999998988888888888877632 147788888886 3444444443
No 248
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.86 E-value=53 Score=39.20 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhhhcCChh--HHHHHHHHH-HHHHhhc--CC-------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDRD--TYSQAAKEL-DSIAATV--DP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATL 70 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrD--T~r~A~~eL-D~lA~~L--~p-------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvL 70 (604)
+.+..|-+..+.+|=|.. |.|+++=|. -.++.++ ++ .++..++..|.+-.+...|+.|-.++..+.-+
T Consensus 294 p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~ki 373 (1128)
T COG5098 294 PGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKI 373 (1128)
T ss_pred chHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455666778888887777 788876443 4455554 32 14678899999999999999999999998888
Q ss_pred Hhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhh
Q 007424 71 SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (604)
Q Consensus 71 ae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~L 109 (604)
+.-- ....-=.++..-++++|+|-.+.||+-+..-+.-|
T Consensus 374 fdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 374 FDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 7766 33345678999999999999999998776655443
No 249
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=59.56 E-value=11 Score=35.17 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHH---HHHhhhhcCCCCCCchhHHHHHHHHHHH
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPT---FLSCILSTNSSDKPGVRKECIHVIATLS 71 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~---fL~~L~e~~ss~kp~~RKaaI~lLGvLa 71 (604)
++-.+++++|.+=.|..+..+|...|-.++++.|.-. +.. .-..|-+-..++++.+|++|++++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4556777888666678899999999999999986533 210 1122333345788899999999988764
No 250
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=59.17 E-value=29 Score=42.55 Aligned_cols=104 Identities=11% Similarity=0.188 Sum_probs=68.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV- 119 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~- 119 (604)
+|.|...|.-. .....|-.-|.++|-+|..| .-.+++-+|-|..+|+||++.||.-+..-|++|-.+-+- .+.
T Consensus 970 ~P~lvkeLe~~---~~~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v-Kw~G 1043 (1529)
T KOG0413|consen 970 MPMLVKELEYN---TAHAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIV-KWNG 1043 (1529)
T ss_pred HHHHHHHHHhh---hHHHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhh-hcch
Confidence 77777777542 34578989999999999888 112455555778999999999999888777776544320 000
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
.++-=.+.+|+ +.++.+..-|=.|++.+...
T Consensus 1044 ~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1044 ELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 12222333343 44556777777778777765
No 251
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=58.79 E-value=25 Score=31.06 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccc---ccHHHHHHHHHhhccCCChhHH
Q 007424 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS---PYITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~---p~L~kIl~~IvrrLkDpDs~VR 99 (604)
-..+++..+..||+..++.||..|.+.....+++.=..+++-+=.+...| ++. |.+...+..+.+.++.--..++
T Consensus 14 ~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~ 93 (110)
T PF04003_consen 14 PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLS 93 (110)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999998666456666667777777777777 333 3466677777777766555566
Q ss_pred HHHHHHHHhh
Q 007424 100 ATCISTVSSL 109 (604)
Q Consensus 100 ~Ac~~aLg~L 109 (604)
+.|-.-+|.|
T Consensus 94 ~l~~~n~~~L 103 (110)
T PF04003_consen 94 KLLDLNLGRL 103 (110)
T ss_pred HHHHHhHHHH
Confidence 6666555554
No 252
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=58.54 E-value=2.6e+02 Score=30.01 Aligned_cols=96 Identities=16% Similarity=0.309 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCchhHHHHHHHHHHHhhh--c---c-cccHHHHHH
Q 007424 19 RDTYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH--N---L-SPYITKIIN 85 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~-------~ss~kp~~RKaaI~lLGvLae~h--~---i-~p~L~kIl~ 85 (604)
.+...+....+..+-..++ +.++.++..+-+. +-..=|..|.+-..+|..+.+.| . + ..++..++-
T Consensus 90 ~evL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Confidence 3344455555555555444 4566666655333 23335889999999999999987 2 2 235789999
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
+|+-+++.++..|-..|+.++..|......
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 253
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=57.99 E-value=4.3e+02 Score=32.29 Aligned_cols=127 Identities=6% Similarity=0.051 Sum_probs=86.6
Q ss_pred HHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-chhHHH
Q 007424 43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVTM 121 (604)
Q Consensus 43 ~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~~~~sl 121 (604)
.+++++.+...++--..|-.+.--+..+.+....--.+-.+...+.+-|++++--|+--|+.|+-.+-.+..- ..+...
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 4455666666665555555555555666444444456777888888999998888998888898888766521 224448
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
+++.++.|+.=.+.---..-..||+.+||.-.+.+-|+-++|+..|.+
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 999999887433322334467899999999888887777776665544
No 254
>PRK09169 hypothetical protein; Validated
Probab=57.82 E-value=6.5e+02 Score=34.38 Aligned_cols=236 Identities=20% Similarity=0.212 Sum_probs=122.2
Q ss_pred HHHHHHhhhcCChhHHHHHHHHH-------HHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccc
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKEL-------DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP 78 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eL-------D~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p 78 (604)
-+++..|.|+.+.+..+.|+..| ..++..+.|..|.-.|..|..- .+.+.-|+++..+.+.++... ....
T Consensus 502 AN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKW--P~~~~cr~AA~aLA~~la~~~~l~~~ 579 (2316)
T PRK09169 502 ANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKW--PEEPDCRAAAEALAARLARRPDLRSA 579 (2316)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHhcChhhhhc
Confidence 35788899999999887777766 3456667887788888888732 234556888887777775543 2222
Q ss_pred cHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccc-----hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHH-h
Q 007424 79 YITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGAS-----AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATI-D 150 (604)
Q Consensus 79 ~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~-----~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalI-E 150 (604)
+=++=|+.++..|.= |+ ..+|..+.-.|++.+.+- .+.. -+-.++.+|..=.+...-..|+.+|+..+ +
T Consensus 580 ~naQ~LAN~LnALSKWP~---~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~ 656 (2316)
T PRK09169 580 LNAQGLANLLNALSKWPD---EDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLR 656 (2316)
T ss_pred cCHHHHHHHHHHHhhCCC---chhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 222333333333322 43 245555555566665431 1222 45666667732122222233444454333 2
Q ss_pred h---cCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---cCcC-CchHHHHHHHHhhhcCCcHHHHHHHH
Q 007424 151 A---AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---AVDG-SGLKGLVSCLLGFLSSQDWAARKAAA 223 (604)
Q Consensus 151 ~---a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag---~~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAa 223 (604)
. ..+...+.|..++.-|.|.-+.+ .++.+++.+...++..+ .+|. +.+.+++..|...- .++ .-|.++.
T Consensus 657 ~~~l~~af~aQ~LaN~LnALSKWp~~~--~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp-~~~-acr~A~~ 732 (2316)
T PRK09169 657 DAGLPRAFDAQGLANALNALSKWPDEA--ACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWP-EEE-ACRAAAE 732 (2316)
T ss_pred cchhHHhcCcHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhcc-Ccc-HHHHHHH
Confidence 1 11122345555555555555433 34444444444333322 2333 44455555554422 122 3566666
Q ss_pred HHHHHHHHHcC--cchhh-hhhHHHHHHHhc
Q 007424 224 EALWRLAVVEK--DAVPE-FKGKCLKIFESK 251 (604)
Q Consensus 224 DaLg~LA~~~g--e~f~p-y~~~~i~~Le~c 251 (604)
..-+.|+...+ ..|.+ -....++.|..+
T Consensus 733 ~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKw 763 (2316)
T PRK09169 733 ALAGRLAADADLRQAMNPQGLANSLNALSKW 763 (2316)
T ss_pred HHHHHHhcChHHHhhcCHHHHHHHHHHHHhC
Confidence 66666665221 33443 346667777643
No 255
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=57.04 E-value=3.4e+02 Score=31.77 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=108.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--- 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~--- 117 (604)
+..|+..|.+...+.++..|++|+-.|+.=...|.+ ||.++.+|....+-.=..=--+-+..|..+..-|.+.|
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~TDsGL~~L---lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLETDSGLQQL---LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCccHHHH---HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 456777777777778889999999988876665533 34444444444433211111245666777777776633
Q ss_pred ----hHHHHHHHHHHHcc---------CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHH
Q 007424 118 ----FVTMLKLLSDALFT---------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV 184 (604)
Q Consensus 118 ----~~sllkPL~eaL~~---------eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLs 184 (604)
.|.+++-++-.+.+ |+...+...||.-|+.++...++.-...-++|..-+.|.|-++. +.=.+.++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhh
Confidence 34466666665542 44556888999999999988765333333445555666665541 22245677
Q ss_pred HHHHHHhcCcC----c-CCchHHHHHHHHhhhcC----------CcHHHHHHHHHHHHHH
Q 007424 185 VVGSVIGSGAV----D-GSGLKGLVSCLLGFLSS----------QDWAARKAAAEALWRL 229 (604)
Q Consensus 185 aIGSiA~ag~~----f-~pyf~~lm~~L~e~L~s----------~Dw~lRkaAaDaLg~L 229 (604)
+|.-+..-|+. + .|.+......|+.-|.. +.|.++.+-.+++..|
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~i 420 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPI 420 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHH
Confidence 77766655432 1 25555544444444421 3466666666666663
No 256
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=56.86 E-value=24 Score=31.34 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
.|-+++-.|+++..+.+-.+.++...++..|-.+-.| ..+||.++.++|+-||..-.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 4678889999999988888899999999999999997 99999999999999997653
No 257
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=56.48 E-value=35 Score=30.86 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=51.7
Q ss_pred hHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhh
Q 007424 41 LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (604)
Q Consensus 41 ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~ 112 (604)
++.+|+.+.+... +..+..|=+|++.+++|+.-. +=..-+..++..|++....... ...+.-++..+...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 6677777777766 666789999999999999888 5556678888888888766665 34455566666644
No 258
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.44 E-value=1.8e+02 Score=27.72 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhc
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~a 192 (604)
.++-|..-| .+.++++|..|-.-|+++++|.+......+ ...+..|.+++.. .+..+|.-++..|..-+.+
T Consensus 38 a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 344444555 567899999999999999999987553222 3477789999988 5888999999999977753
No 259
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.83 E-value=56 Score=30.59 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhh------hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhC
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE------FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~p------y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i 273 (604)
..++..|...|.+.+-.+.--|+..|-.+..-.|+.|.. |.+...+++.....+...+||+-+.+.|+.|..-
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888877755533 3456666666666666666999999999999763
No 260
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=55.59 E-value=1.1e+02 Score=27.86 Aligned_cols=101 Identities=12% Similarity=0.148 Sum_probs=66.2
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh---cCCcHHHHHHHHHHHHHHHHHcCcchhhhh--
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL---SSQDWAARKAAAEALWRLAVVEKDAVPEFK-- 241 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L---~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~-- 241 (604)
+-++.++.+..+...++.-|.....-. -.+..+|..|...| ....|-.--=|+-.|-.|.....+.|....
T Consensus 8 v~eAT~~d~~gp~~~~l~eIa~~t~~~----~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~ 83 (125)
T PF01417_consen 8 VREATSNDPWGPPGKLLAEIAQLTYNS----KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD 83 (125)
T ss_dssp HHHHTSSSSSS--HHHHHHHHHHTTSC----HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 445555556666666666555322111 34567899999999 557899888889999999887775554443
Q ss_pred -hHHHHHHHhccC------cchhHHHHHHHHHHHHHH
Q 007424 242 -GKCLKIFESKRF------DKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 242 -~~~i~~Le~cRf------DKvK~VRda~~~AL~~wK 271 (604)
...|+.|.+.++ |....||+.|.+.++++.
T Consensus 84 ~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 84 HIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp THHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 456777777766 566679999999998874
No 261
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=55.14 E-value=1.2e+02 Score=28.76 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc
Q 007424 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST 51 (604)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~ 51 (604)
++-.+|+||++..-..+. ++|..+....+++.+..++..|.+.
T Consensus 3 ~v~~~lnklt~~n~~~~~-~~l~~~~~~~~~~~~~~i~~~i~~~ 45 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESII-DELIKLNWSDDPETLKEIVKLIFEK 45 (209)
T ss_dssp HHHHHHHHCSSTTHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHhhh
Confidence 567788999855544444 4444444444555567777777654
No 262
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=54.32 E-value=31 Score=34.65 Aligned_cols=72 Identities=24% Similarity=0.205 Sum_probs=56.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch
Q 007424 166 RLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (604)
Q Consensus 166 RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f 237 (604)
-+.++|+-.--.+-..++..++++.. .|..+.|+|..++..|.+.-.+++...|+.+=++||+-..+.| +.|
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~v 77 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQV 77 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHH
Confidence 34455533333456778889998886 5666779999999999999899999999999999999888888 544
No 263
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.95 E-value=2.3e+02 Score=29.78 Aligned_cols=75 Identities=9% Similarity=0.101 Sum_probs=43.6
Q ss_pred hhccCCCh--hHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 007424 89 RNFRDKNS--ALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (604)
Q Consensus 89 rrLkDpDs--~VR~Ac~~aLg~LAe~l~d~~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~ 164 (604)
+.+.|++. -||.||..||+.++..-.... ...+++.++...+..++.. ....+|.++-+ =|..+|+
T Consensus 118 ~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~-------~~~~Lv~~~~d---L~~~EL~ 187 (249)
T PF06685_consen 118 ELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF-------LWGSLVADICD---LYPEELL 187 (249)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH-------HHHHHHHHHHh---cCHHHhH
Confidence 45777775 489999999999988754322 3337888887754333322 22233322211 2445666
Q ss_pred HHHHHHhcC
Q 007424 165 VRLERLLKS 173 (604)
Q Consensus 165 ~RL~klL~s 173 (604)
|.+-+++..
T Consensus 188 ~~I~~~f~~ 196 (249)
T PF06685_consen 188 PEIRKAFED 196 (249)
T ss_pred HHHHHHHHc
Confidence 666666643
No 264
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=52.82 E-value=2.1e+02 Score=27.12 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=26.0
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcC
Q 007424 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTN 52 (604)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ 52 (604)
++...++||++ +.....+++|..+.... ++....++..+.+..
T Consensus 3 ~v~~~lnkLs~-~n~~~~~~~l~~~~~~~-~~~~~~l~~~i~~~~ 45 (200)
T smart00543 3 KVKGLINKLSP-SNFESIIKELLKLNNSD-KNLRKYILELIFEKA 45 (200)
T ss_pred HHHHHHhhCCH-HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHH
Confidence 57788999985 44444455555544332 334677777776553
No 265
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=52.38 E-value=4.2e+02 Score=34.52 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=53.9
Q ss_pred chHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH
Q 007424 2 AHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT 81 (604)
Q Consensus 2 ~~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~ 81 (604)
+..++.-+++.|-++=|++.+.-++.+|..|-.. +++-..++|.+|..-.=++ ....+---++++.|...- ...||
T Consensus 205 p~~lq~eiI~~LPeIl~ds~h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~Ls~-~~l~~vr~~vl~~L~s~~--~e~LP 280 (1426)
T PF14631_consen 205 PVELQKEIISSLPEILDDSQHDEVVEELLELLQE-NPELTVPILDALSNLNLSP-ELLEEVREKVLEKLSSVD--LEDLP 280 (1426)
T ss_dssp -TTTHHHHHHTHHHHS-GGGHHHHHHHHHHHHHH--STTHHHHHHHHHHS---H-HHHHHHHHHHHHSTTSS---TTHHH
T ss_pred CHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc-CCchhhhHHHHHhcCCCCH-HHHHHHHHHHHHHHhcCC--hhhhH
Confidence 3567778888888887777777777777665543 3434677788887643321 122223334455554322 34588
Q ss_pred HHHHHHHhhccCCCh
Q 007424 82 KIINSITRNFRDKNS 96 (604)
Q Consensus 82 kIl~~IvrrLkDpDs 96 (604)
-++.+|.+.+...|.
T Consensus 281 ~lirFLL~s~t~~da 295 (1426)
T PF14631_consen 281 VLIRFLLQSITPSDA 295 (1426)
T ss_dssp HHHHHHHHS-SSTTH
T ss_pred HHHHHHHHhCCcccH
Confidence 888888887776663
No 266
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=52.22 E-value=3.8e+02 Score=31.96 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=109.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----c----ccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----N----LSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~----i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
++.||-+..+..+ ..+..|+=.+.-.-.+...+ . +-.+--+..-...-.++| .-++.|+|..+-.++.
T Consensus 330 ~~ellf~~~sl~a-~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd--~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 330 TTELLFICASLAA-SDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKD--HDFVAAALLCLKSFSR 406 (678)
T ss_pred HHHHHHHHHHHhh-cchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHHHHH
Confidence 5666666665433 34455554443222221111 1 222222333333344544 4477777777766665
Q ss_pred hhc--c-ch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCCchhHHHHHHHHH
Q 007424 112 RVG--A-SA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVV 186 (604)
Q Consensus 112 ~l~--d-~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~~~kaK~alLsaI 186 (604)
-.. + .. ......||+..| .+++--++.++-.||-.+|=.-.+.--.++.. .+..+.+++..+.+..|.-.+-++
T Consensus 407 sV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 407 SVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 442 1 11 222778888888 57777899999999988764333211122222 567788899888888887777777
Q ss_pred HHHHh-cCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 187 GSVIG-SGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 187 GSiA~-ag~~--f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.-+.- .-.. +.+|-.--+..|.++..++||++..++...|--+
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 75542 2222 3466666678888888999999888877766554
No 267
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=52.14 E-value=24 Score=30.13 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhhhcccccHH--HHHHHHHhhccCCC-hhHHHHHHHHHHhhhhh
Q 007424 59 VRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKN-SALQATCISTVSSLSPR 112 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h~i~p~L~--kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~ 112 (604)
..|+++-++|-++..-.=.++|+ .+++.|++.....+ .+||-.|..+||-++.-
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 47899999999977552223444 58888888887644 58999999999999865
No 268
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.08 E-value=1.7e+02 Score=32.19 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=70.5
Q ss_pred CchhHHHHHHHHHHHhhhcccccH-HHHHHHHHhhcc----CC--ChhHHHHHHHHHHhhhhhhcc---c--------hh
Q 007424 57 PGVRKECIHVIATLSNSHNLSPYI-TKIINSITRNFR----DK--NSALQATCISTVSSLSPRVGA---S--------AF 118 (604)
Q Consensus 57 p~~RKaaI~lLGvLae~h~i~p~L-~kIl~~IvrrLk----Dp--Ds~VR~Ac~~aLg~LAe~l~d---~--------~~ 118 (604)
-..|++|.-++=.||+-+ ...+ +-++.+|...|. +| +.--.++|+.-++.||....- + .+
T Consensus 225 ~TrR~AA~dfl~~L~~~~--~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKF--EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp -SHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CCcHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 466889998888887755 1122 222233333343 44 345789999999999998842 0 11
Q ss_pred HH----HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 007424 119 VT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVV 186 (604)
Q Consensus 119 ~s----llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaI 186 (604)
.. .+.|-+.. -....|-+++.|+-.+..+-.-+ ..+.+..++|-+..+|.++++-++..+..||
T Consensus 303 ~~Ff~~~v~peL~~-~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQP-DVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcc-cCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12 23333321 01234445555554444444433 3578999999999999999988887665554
No 269
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=51.54 E-value=5.4e+02 Score=31.52 Aligned_cols=84 Identities=18% Similarity=0.348 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHhhccCC-ChhHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 77 SPYITKIINSITRNFRDK-NSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDp-Ds~VR~Ac~~aLg~LAe~l~d~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
.|.|-+.|=.|++.-+.. ++.+-.-|++.+|++..|+ +-..++ |++.|++.|. -..+..+||.|+-++|---
T Consensus 187 ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWI-dInLIaNd~f~nLLy~fl~---ieelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 187 IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWI-DINLIANDYFLNLLYKFLN---IEELRIAACNCILAIVSKK 262 (980)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhh-hhhhhhchhHHHHHHHHHh---HHHHHHHHHHHHHHHHhcC
Confidence 355555555566666666 8889999999999999997 333333 6666677663 5568899999999998763
Q ss_pred CCCC--hhhHHHHH
Q 007424 153 QDPD--AGKLGRME 164 (604)
Q Consensus 153 ~d~i--~~yL~~L~ 164 (604)
-++. .+.|+.|+
T Consensus 263 MkP~dKL~lln~L~ 276 (980)
T KOG2021|consen 263 MKPMDKLALLNMLN 276 (980)
T ss_pred CChhHHHHHHHHHH
Confidence 3332 35566663
No 270
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=50.95 E-value=25 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
.||.+++++||.+... ..+.+|.++|
T Consensus 2 ~vR~~aa~aLg~~~~~-------~a~~~L~~~l 27 (30)
T smart00567 2 LVRHEAAFALGQLGDE-------EAVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHHcCCH-------hHHHHHHHHh
Confidence 5899999999998554 3567777777
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.90 E-value=2.1e+02 Score=26.56 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHH-HHHHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLG-RMEVRLE 168 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~-~L~~RL~ 168 (604)
+.++|...--..|+.+..-... -...++-|-.-| ...++++|..|..-|+.++.+.++... ++-. +-+..|.
T Consensus 13 ~~~~D~~~il~icd~I~~~~~~-----~k~a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 13 LEEPDWALNLELCDLINLKPNG-----PKEAARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred cCCccHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence 4456655555555555433111 112555566666 467899999999999999999887553 3332 3555688
Q ss_pred HHhcC---CchhHHHHHHHHHHHHHhc
Q 007424 169 RLLKS---EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 169 klL~s---~~~kaK~alLsaIGSiA~a 192 (604)
+++.. .+..+|.-++..|..-+.+
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 88875 3777888899999887764
No 272
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=50.35 E-value=3.9e+02 Score=29.50 Aligned_cols=208 Identities=12% Similarity=0.117 Sum_probs=118.8
Q ss_pred ChhHHHHHHHHHHHHHhhc------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhh
Q 007424 18 DRDTYSQAAKELDSIAATV------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRN 90 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~Ivrr 90 (604)
+..-+..|++.|.-++.+- -.-+++.|+-.=.+. .+..-..|.+|++++=.+.+.. .....-.-++..|+.-
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvai 116 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAI 116 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHH
Confidence 3556666777665555421 111222222221221 1223478999999998887775 3333345567777777
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHH--HHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGR--MEVR 166 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~--L~~R 166 (604)
..+++-..|.+|.+++..|+-.=.+--.+. -+++|++++.+ ...+ .+-.++..++.-++.+. ..|+.. =++.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d---~~~~-~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID---GSFS-ISESLLDTLLYLLDSPRTRKYLRPGFDLES 192 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh---ccHh-HHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence 888998999999999998876632111122 57889999853 2222 34445566666655443 233322 2233
Q ss_pred HHHHhcCC--------c-h-hHHHHHHHHHHHHHh--cCc-CcC-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 167 LERLLKSE--------V-F-KAKAAGLVVVGSVIG--SGA-VDG-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 167 L~klL~s~--------~-~-kaK~alLsaIGSiA~--ag~-~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
++..+... . . +.+ ...-+|.++-. .|= .|. +-| ..+..|.++|.-..-.+|++..|.|..+-.+
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 33333222 1 1 221 12223333332 231 122 434 6788899999988889999999999987764
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=50.30 E-value=30 Score=36.24 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHcc--------CCCh----------hHHHHHHHHHHHHH--hhcCC--
Q 007424 98 LQATCISTVSSLSPRVGASAFV-TMLKLLSDALFT--------EQDT----------NAQVGAALCLAATI--DAAQD-- 154 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~--------eqdk----------~vQ~~AA~cLaalI--E~a~d-- 154 (604)
+|+-+..+++.++-++-=..+. ++..|+++.|++ -+|+ .-|.-|--+|.+++ |+--|
T Consensus 82 lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDli 161 (257)
T PF12031_consen 82 LRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDLI 161 (257)
T ss_pred HhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCccee
Confidence 5666666666666655212222 388999999973 1222 24666666666654 33222
Q ss_pred ---CChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhcCCcHH
Q 007424 155 ---PDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 155 ---~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f---~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
++-..+.+|+..|.++|..+ +...+..++..+..+++++..+ ..+-..+|..|..|+.+.+-.
T Consensus 162 LaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 162 LATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred eeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 22356889999999999877 7778899999998888766443 244456788888888654433
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=50.17 E-value=1.2e+02 Score=37.65 Aligned_cols=145 Identities=10% Similarity=0.134 Sum_probs=101.4
Q ss_pred chhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCCh
Q 007424 58 GVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDT 135 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk 135 (604)
..|-.++.-||-+|-.| .....+.||.+++-|.-.+- .||.-.+-|++-|+.++. .+.. |.+.+...| -+.++
T Consensus 946 ~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L-~Dp~~ 1020 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASL-CDPSV 1020 (1529)
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHh-cCchH
Confidence 35677777788888777 22345688888999987765 599999999999988873 1222 777777777 67888
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHhh
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLGF 210 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~--f~pyf~~lm~~L~e~ 210 (604)
.|..-+..-|+++++.- +..+=+.|+-|++-.|-..+-.++.-+==+||++-+..+- |...|-..|=.|.+|
T Consensus 1021 iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~ 1094 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQA 1094 (1529)
T ss_pred HHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHH
Confidence 88888899899999852 2234467888888777677777777777788888876532 223444444444333
No 275
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=49.64 E-value=2.7e+02 Score=27.45 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHH-HcC--c
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLAV-VEK--D 235 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~--s~Dw~lRkaAaDaLg~LA~-~~g--e 235 (604)
....|+++++|.-+.+. .+.+.+.+. .+|+....-....-..|.+|+. +++-.....-+..|..+.. ..+ .
T Consensus 69 ~~~F~~l~~LL~~~~y~-~~ll~Glv~---S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dR 144 (193)
T PF12612_consen 69 SEYFPRLVKLLDLPEYR-YSLLSGLVV---SAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDR 144 (193)
T ss_pred HHHHHHHHHHhccHHHH-HHHHhHHHh---cCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556677778776554 233344443 4555333334445566777774 3443333444444444444 444 4
Q ss_pred chhhhhhHHHHHHHhccCcchh
Q 007424 236 AVPEFKGKCLKIFESKRFDKVK 257 (604)
Q Consensus 236 ~f~py~~~~i~~Le~cRfDKvK 257 (604)
.+-|...-+-.+|++.=||.+.
T Consensus 145 v~vP~l~tl~~Ll~~~~~~~~~ 166 (193)
T PF12612_consen 145 VVVPLLKTLDFLLSSGVFDSLP 166 (193)
T ss_pred eeecHHHHHHHHHhCcchhccc
Confidence 7778878888888887777744
No 276
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.57 E-value=6.7e+02 Score=32.05 Aligned_cols=216 Identities=12% Similarity=0.139 Sum_probs=114.4
Q ss_pred hHHHHHhhhhcCCCC----CCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 41 LPTFLSCILSTNSSD----KPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~----kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
++.|..+++-..+++ +...|-+-...||...-.| .....=-+||..+-.--.+. +. .++++..+...+
T Consensus 194 lsl~~~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~---~~--~ad~v~l~~sky-- 266 (1251)
T KOG0414|consen 194 LSLIVDPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLA---VH--VADAVTLVRSKY-- 266 (1251)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHhc--
Confidence 455566655444443 3344555557777776666 55455555555443332111 11 112222233322
Q ss_pred chhHHHHHHHHHHHccCCChhH-HHHHHHHHHHHHhhcCCCChhhHHHHHH----HHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 116 SAFVTMLKLLSDALFTEQDTNA-QVGAALCLAATIDAAQDPDAGKLGRMEV----RLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 116 ~~~~sllkPL~eaL~~eqdk~v-Q~~AA~cLaalIE~a~d~i~~yL~~L~~----RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+..+++.-++..+- ...++. ..+..-....+.-.+. ..+|.||- .|+.+|++.++..+.+++.++|-+.
T Consensus 267 -~~~sl~~~Iir~I~-~~~~~~~d~~g~k~v~~fL~elS----~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V 340 (1251)
T KOG0414|consen 267 -GSVSLAGNIIRSIG-SPEPNEKDCAGPKIVGNFLVELS----ERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLV 340 (1251)
T ss_pred -ccHHHHHHHHHHhc-ccchhcccccchhhHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 23346666666662 222111 1111111222222221 23344443 3667889999999999999988766
Q ss_pred hc---CcCcCCch----HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHH
Q 007424 191 GS---GAVDGSGL----KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVM 263 (604)
Q Consensus 191 ~a---g~~f~pyf----~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~ 263 (604)
.. +.+..+.. ..++..|.+.+.+-.--+|--+.+.+..|-.-.-.... ....++...=.|=-||-..||-.|
T Consensus 341 ~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~DkSslVRk~A 419 (1251)
T KOG0414|consen 341 ASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLEDKSSLVRKNA 419 (1251)
T ss_pred HHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccccccHHHHHHH
Confidence 32 11111111 13566777777788899999999999998874432222 123334433333339999999986
Q ss_pred HHHHHHH
Q 007424 264 NKMIEAW 270 (604)
Q Consensus 264 ~~AL~~w 270 (604)
..=+.-+
T Consensus 420 i~Ll~~~ 426 (1251)
T KOG0414|consen 420 IQLLSSL 426 (1251)
T ss_pred HHHHHHH
Confidence 6554433
No 277
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.09 E-value=78 Score=30.22 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhhcC-----CCChHHHH--------HhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHH
Q 007424 20 DTYSQAAKELDSIAATVD-----PTLLPTFL--------SCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKII 84 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~-----pe~ip~fL--------~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl 84 (604)
.+...|++.|..+.++-. .+..+.|+ .+|.....+..+..=..+++++..+...+ .+..+++-++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888777642 21112333 33333344444666667888888887767 8888999999
Q ss_pred HHHHhhccCCCh---hHHHHHHHHHHhhhhh
Q 007424 85 NSITRNFRDKNS---ALQATCISTVSSLSPR 112 (604)
Q Consensus 85 ~~IvrrLkDpDs---~VR~Ac~~aLg~LAe~ 112 (604)
+.|+.++-+++. .-|..+++++..++..
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 999997766554 3577788888888765
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=49.03 E-value=2.4e+02 Score=26.76 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhH-HHHHHHHHHHhc-CCchhHHHHHHHHHHHHHh
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLK-SEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL-~~L~~RL~klL~-s~~~kaK~alLsaIGSiA~ 191 (604)
.++-|-.-| ...++++|.-|..-|+.++.+.+.... ++- .+++.+|.+++. ..+..+|.-++.+|.+-+.
T Consensus 42 a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 344444445 457899999999999999999876543 232 347788888886 4477899999999987774
No 279
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=48.17 E-value=4.5e+02 Score=29.62 Aligned_cols=234 Identities=13% Similarity=0.140 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCC-chhHHHHHHHHHHHhhhcc-cccHHHHHHHHHhhccCCCh-hH
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKP-GVRKECIHVIATLSNSHNL-SPYITKIINSITRNFRDKNS-AL 98 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp-~~RKaaI~lLGvLae~h~i-~p~L~kIl~~IvrrLkDpDs-~V 98 (604)
+--|+++|-..+...+.+.++.+-.+..+-....+| ..|++++.+|-.++....- ..-+. ....+.+.++.. ..
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R---~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR---AEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH---HHHHHHHhcCCCchh
Confidence 344666676667777888888888888887776666 5899999999999887722 22222 233444444321 23
Q ss_pred HHHHHHHHHhhhhhhccc--------hhH-HHHHHHHHHHcc-----C-----CChh--H---HHHHHHHH-HHHHhhc-
Q 007424 99 QATCISTVSSLSPRVGAS--------AFV-TMLKLLSDALFT-----E-----QDTN--A---QVGAALCL-AATIDAA- 152 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~--------~~~-sllkPL~eaL~~-----e-----qdk~--v---Q~~AA~cL-aalIE~a- 152 (604)
=..-+++|-.|.++.-+- ++- .++.+++.+.-. . +.++ . ......-| .=+++..
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK 163 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK 163 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 345555555565555441 111 155555533310 0 0000 0 11111222 2222221
Q ss_pred ---CCCChhhHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 153 ---QDPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 153 ---~d~i~~yL~~L~~RL~klL~s~~~k-aK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.....+.+..|+.+++.+-...+.. .=.+.+..+.+++.-|......+..++..|....... .+.+.+-.+|..
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~n 241 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRN 241 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHH
Confidence 1222356777888888774433222 2256788888888766655577888888887776555 555667777777
Q ss_pred HHH-HcC-cchhhhhhHHHHHH--Hhc-cCcchhHHHHHHH
Q 007424 229 LAV-VEK-DAVPEFKGKCLKIF--ESK-RFDKVKVVREVMN 264 (604)
Q Consensus 229 LA~-~~g-e~f~py~~~~i~~L--e~c-RfDKvK~VRda~~ 264 (604)
|+. ..| ..+.-. ..+| +.- ..+-+..+|.|+.
T Consensus 242 L~~S~~g~~~i~~L----~~iL~~~~~~~~~~~~~lRGAv~ 278 (464)
T PF11864_consen 242 LLKSHLGHSAIRTL----CDILRSPDPQNKRDINVLRGAVF 278 (464)
T ss_pred HHcCccHHHHHHHH----HHHHcccCccccccHHHHhhHHH
Confidence 775 334 333322 4455 211 2334555676643
No 280
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=48.04 E-value=16 Score=35.79 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
+.+.+.+.+=+.+++.-+|.++..++-.+... .....+-.++..++++.+..+|.+.+.+|..+...-++...+||
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 44555555666677777777776666666665 12234444555544666667777777777666655444444444
Q ss_pred HH
Q 007424 161 GR 162 (604)
Q Consensus 161 ~~ 162 (604)
.+
T Consensus 195 ~~ 196 (213)
T PF08713_consen 195 QK 196 (213)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.64 E-value=6.5e+02 Score=31.01 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=99.7
Q ss_pred HHhhhhcCCCCCCchhHHHHHHHHHH--Hhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH
Q 007424 45 LSCILSTNSSDKPGVRKECIHVIATL--SNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (604)
Q Consensus 45 L~~L~e~~ss~kp~~RKaaI~lLGvL--ae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~ 119 (604)
+.||..+.+..+-.+|.++|.+|..+ +++- .+.--.|.=++.++-.|.|.--.||+++.--|-.|..........
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 34444444455668999999999988 3322 111123455677788899999999999988888777665321112
Q ss_pred HHHHHHHHHHcc--CCChhHH--HHHHHHHHHHHhhcCCCC--hhhHHH--HHHHHHHHhcCCchh---------HH---
Q 007424 120 TMLKLLSDALFT--EQDTNAQ--VGAALCLAATIDAAQDPD--AGKLGR--MEVRLERLLKSEVFK---------AK--- 179 (604)
Q Consensus 120 sllkPL~eaL~~--eqdk~vQ--~~AA~cLaalIE~a~d~i--~~yL~~--L~~RL~klL~s~~~k---------aK--- 179 (604)
..+...|+-||. +.+.+.. +.+--||--+---+.+.. -.|+.+ .+|||.++|.-.-|. -|
T Consensus 204 VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~N 283 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQN 283 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHH
Confidence 245555555542 2222111 122233322211122222 234544 778888888533111 11
Q ss_pred -HHHHHHHHHHHhcCcCcC---Cc---h--HHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHH
Q 007424 180 -AAGLVVVGSVIGSGAVDG---SG---L--KGLVSCLLGFLSSQD--WAARKAAAEALWRLAV 231 (604)
Q Consensus 180 -~alLsaIGSiA~ag~~f~---py---f--~~lm~~L~e~L~s~D--w~lRkaAaDaLg~LA~ 231 (604)
-.+|.+|.+++.-|.... .. + ..+|..|...|.+++ -.++..++-+++.+.+
T Consensus 284 v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 284 VIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 235667777665442211 11 1 125677777776664 4445555555554443
No 282
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=45.08 E-value=1.2e+02 Score=28.44 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhc------c
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF------R 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrL------k 92 (604)
|--.-+.||-.+... ++..+.-++..|..-..+..|.++.-++++|-.||+.. .+.-.+.+=.. +++.+ -
T Consensus 17 ~pgy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~-~Ik~~~~f~g~~ 94 (122)
T cd03572 17 TPGYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA-QIRECANYKGPP 94 (122)
T ss_pred CchHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-HHHHHHHcCCCC
Confidence 555566677777666 55668888888888888777899999999999987655 22233333322 22222 2
Q ss_pred CC------ChhHHHHHHHHHHhhh
Q 007424 93 DK------NSALQATCISTVSSLS 110 (604)
Q Consensus 93 Dp------Ds~VR~Ac~~aLg~LA 110 (604)
|| ...||.+|-+++..|-
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHh
Confidence 32 2358999988887764
No 283
>PRK14707 hypothetical protein; Provisional
Probab=45.01 E-value=8.2e+02 Score=33.54 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHH-HH------hhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cc
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDS-IA------ATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NL 76 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~-lA------~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i 76 (604)
---..|..|.|--|.+..+.|+..|-. |+ ..|++..+.-.|+.|+.- .+.+.-|.+++.+-+.|+... ..
T Consensus 962 ~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKW--Pd~~~Cr~AA~~LA~rLa~ep~L~ 1039 (2710)
T PRK14707 962 NLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKW--LQMPVCAATVEALAARLSNDPGLC 1039 (2710)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcC--CCchHHHHHHHHHHHHhccCHhhh
Confidence 344567778888888888888766633 32 457887788889999853 455677888888888887766 55
Q ss_pred cccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccch-----hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 77 SPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASA-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~-----~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
..+-+.=|+..+..|+= |+. ..|..|.-.|+.++.+.+ +.. -+-..+.+|..=++...-..|+.+|+..+
T Consensus 1040 ~amdaQ~lan~LNALSKWPde---~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL 1116 (2710)
T PRK14707 1040 KALSSQGLTTVLNALCKWPEM---PVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRL 1116 (2710)
T ss_pred hhcchHHHHHHHHhhccCCCc---hhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 55555666666666644 543 456666666666766522 111 45566677743344455666788887777
Q ss_pred hhcCCC----ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007424 150 DAAQDP----DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGS 188 (604)
Q Consensus 150 E~a~d~----i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGS 188 (604)
-..... ....+..++.-|.|....+.+ +.++...-+-
T Consensus 1117 ~~~~~l~~~fd~q~vA~~LNALSKWp~~~~c--r~Aa~~LA~R 1157 (2710)
T PRK14707 1117 TDDAGLRHVFDPINVSQALNALSKWPGTQAC--ESAIDVLAAT 1157 (2710)
T ss_pred ccccchhccCCHHHHHHHHHHHhcCCCchHH--HHHHHHHHHH
Confidence 543221 234456666666666655543 3344443333
No 284
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.46 E-value=92 Score=30.37 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhh
Q 007424 45 LSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (604)
Q Consensus 45 L~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~ 112 (604)
...+.+-..++++..||.++.++-- ++...+++.++..+...+.|++--||.|..++|..++..
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~----~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLR----YIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTT----HGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 3444444556667777777655421 133367777777777777777777777777777777666
No 285
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=44.42 E-value=55 Score=28.85 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChh--HHHHHHHHHHhhhhhh
Q 007424 55 DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSA--LQATCISTVSSLSPRV 113 (604)
Q Consensus 55 ~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~--VR~Ac~~aLg~LAe~l 113 (604)
..+..|..|-.+|+.+|.-+ .....-++|+..+.+.|.||... .+=-|..+|..|....
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988 44445679999999999998864 5667777777776655
No 286
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=43.76 E-value=3.9e+02 Score=27.64 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC---CC-ChhhHHHHHHHHHHHhcCC--c---hhHHHHHH-HHHHHHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ---DP-DAGKLGRMEVRLERLLKSE--V---FKAKAAGL-VVVGSVI 190 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~---d~-i~~yL~~L~~RL~klL~s~--~---~kaK~alL-saIGSiA 190 (604)
+..-++..|+.-..+.+-..++-++.++++.+- ++ +.+...+.+..++..+.+. . .-=|.|-| -+|.+|.
T Consensus 97 ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL 176 (255)
T PF10350_consen 97 IGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAIL 176 (255)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHH
Confidence 444455555544566777788888888888753 22 2234455777777777766 2 12234433 4666666
Q ss_pred hcCcCcC-CchHHHHHHHHhhhcCCcH--------HHHHHHHHHHHHHHH--HcCcchhhhhhHHH
Q 007424 191 GSGAVDG-SGLKGLVSCLLGFLSSQDW--------AARKAAAEALWRLAV--VEKDAVPEFKGKCL 245 (604)
Q Consensus 191 ~ag~~f~-pyf~~lm~~L~e~L~s~Dw--------~lRkaAaDaLg~LA~--~~ge~f~py~~~~i 245 (604)
.++.... +.|..+|..|.+....+.- .-|--|+.+|-.|-. ..++...||.+..+
T Consensus 177 ~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 177 SAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 6654332 7888889999888754211 245556666666555 33466777755444
No 287
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=7.6e+02 Score=30.93 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh--cC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG--SG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~--ag--~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
.++.+++.|-..+|.+++...+-.+|.++....- +. ..+.|-.-..=|.+++++..+|--+=--|+.+|..|....
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 4678899999999999988888888887765332 11 2234666666677777777777666677899999999888
Q ss_pred Ccchhh-hhhHHHHHHHhccCc-----chhHHHHHHHHHHHHHHhCC
Q 007424 234 KDAVPE-FKGKCLKIFESKRFD-----KVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 234 ge~f~p-y~~~~i~~Le~cRfD-----KvK~VRda~~~AL~~wK~i~ 274 (604)
||++.. +...++.-|+..=-| +-|++|.-..+=--..|-|.
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~ 925 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSIS 925 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 876553 334444444422112 34666655443333334343
No 288
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=41.84 E-value=4.1e+02 Score=27.37 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCC----ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh
Q 007424 23 SQAAKELDSIAATVDPT----LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH 74 (604)
Q Consensus 23 r~A~~eLD~lA~~L~pe----~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h 74 (604)
+-++++|..+..+..+. ....+..+-..-..+ =|..|-+.+.-|+.+..++
T Consensus 2 q~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~lL~~-lPaaR~AVley~~~vf~ea 56 (213)
T PF14837_consen 2 QNLLDELKSFIRGVRPCYSNKSVEDLVKCALSLLRS-LPAARDAVLEYFGLVFDEA 56 (213)
T ss_pred chHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHH
Confidence 34677888888886541 233333222222221 3678888888888886665
No 289
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=93 Score=40.13 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc
Q 007424 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (604)
Q Consensus 38 pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~ 114 (604)
++.++++...+..+.-+..+..|-.+|..+-.+..-- .+.++||.++|+|...+.|-+-.|-..|.+.+-++=+.+.
T Consensus 1536 ~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1536 KDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 3338888888876666666677777887777775544 7789999999999999999999999999998887766664
No 290
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=41.36 E-value=1e+03 Score=31.92 Aligned_cols=255 Identities=12% Similarity=0.105 Sum_probs=143.2
Q ss_pred HHHHhhhcC-ChhHHHHHHHHHH---HHHhhc-CC-C--------C-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh
Q 007424 9 VNGLLNKLS-DRDTYSQAAKELD---SIAATV-DP-T--------L-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS 73 (604)
Q Consensus 9 vl~~L~KLs-DrDT~r~A~~eLD---~lA~~L-~p-e--------~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~ 73 (604)
+-..+++.+ .++ ..+|+-.|| .++..+ +- | . +.+|...+.. +....+|.-.+.++..+...
T Consensus 1138 l~~hf~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~---s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1138 LSDFFVTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK---SNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHH
Confidence 334466653 334 234555555 555543 21 1 1 4566555542 34568999999999988666
Q ss_pred h--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-chh--HHHHHHHHHHHc--cCC--ChhHHHHHHHH
Q 007424 74 H--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAF--VTMLKLLSDALF--TEQ--DTNAQVGAALC 144 (604)
Q Consensus 74 h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~~~--~sllkPL~eaL~--~eq--dk~vQ~~AA~c 144 (604)
+ .|..=+.-|+.++.....|....+-..+.+++..+...... -+. ...+.-+++.|. ..+ +.++-..|..-
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 6 77778999999999888898887777788888776554321 110 124445555552 111 22222222211
Q ss_pred H----HHHHhhc-------------------------------C-CCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007424 145 L----AATIDAA-------------------------------Q-DPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGS 188 (604)
Q Consensus 145 L----aalIE~a-------------------------------~-d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGS 188 (604)
| ..+.++- + +....+--.|+..|.++...+...+|..+|..+--
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2 2222210 0 00013445577788888888888899888887777
Q ss_pred HHh-cCcCcCCch-----HHHHHHHHhhhc------------------------CCcHHHHHHHHHHHHHHHHHcC---c
Q 007424 189 VIG-SGAVDGSGL-----KGLVSCLLGFLS------------------------SQDWAARKAAAEALWRLAVVEK---D 235 (604)
Q Consensus 189 iA~-ag~~f~pyf-----~~lm~~L~e~L~------------------------s~Dw~lRkaAaDaLg~LA~~~g---e 235 (604)
+.. -|..|.|-| ..++--|-+.+. ...|- .-....+|..|..... +
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 664 567776533 222222222221 01353 3445555555555443 5
Q ss_pred chhhhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 236 AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 236 ~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+.++.+.++.+|..|-.--....=..-..+|+
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~ 1485 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFV 1485 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 666677888999998876554444333344444
No 291
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=41.31 E-value=4.5e+02 Score=27.63 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=55.3
Q ss_pred cccccHHHHHHHHHhhc----cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 75 NLSPYITKIINSITRNF----RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrL----kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
-+.|+|-++|...+.+. .|++....-=+..-|+++-+. .-++||+..+..+.+.. -.+.-+.+.|
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~-------~A~~~li~l~~~~~~~~----~~l~GD~~tE 99 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE-------RALPPLIRLFSQDDDFL----EDLFGDFITE 99 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh-------hhHHHHHHHHcCCcchH----HHHHcchhHh
Confidence 66788888888766443 233332222223334444222 36777877773222210 0111111111
Q ss_pred hcCCCChhhHHHHHH----HHHHHhcCCc--hhHHHHHHHHHHHHHhcCcCc
Q 007424 151 AAQDPDAGKLGRMEV----RLERLLKSEV--FKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 151 ~a~d~i~~yL~~L~~----RL~klL~s~~--~kaK~alLsaIGSiA~ag~~f 196 (604)
. ....|..++. .|.+++++++ --+|.+++.+++.++..|...
T Consensus 100 ~----l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 100 D----LPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred H----HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1122222222 4567777773 348999999999999887654
No 292
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=41.23 E-value=74 Score=33.20 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCcc
Q 007424 447 LSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRM 507 (604)
Q Consensus 447 ~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~deis~dla~ssgr~ 507 (604)
+..|-+|+.||.||=.-++||||---+-+-+...-|+.=+.-|+.++|+.++ ++..-|-+
T Consensus 53 leqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg-~afdvg~i 112 (252)
T COG5314 53 LEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQG-YAFDVGSI 112 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhH
Confidence 3345555555555556677788877788888888999999999999999765 55554534
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=41.13 E-value=1.6e+02 Score=27.39 Aligned_cols=74 Identities=15% Similarity=-0.003 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhh-hhh-HHHHHHHhccCcc---hhHHHHHHHHHHHHHHhCC
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE-FKG-KCLKIFESKRFDK---VKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~p-y~~-~~i~~Le~cRfDK---vK~VRda~~~AL~~wK~i~ 274 (604)
..++..|...|.+.+-.+...|+..|-.+..-.|+.|.. +.. .++.-|...-..+ -..||+-+.+.|+.|..--
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 357788888888888888888999999999988875533 333 3333344333342 4579999999999998733
No 294
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=90 Score=32.45 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----cCcCc
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG----SGAVD 196 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~----ag~~f 196 (604)
+|+-+++.|-.-..+. .--|-.-..-++...+..+++.||+|+.-|-..|.+.+-.++--.|-+|.-+.. +|.+.
T Consensus 115 yLp~F~dGL~e~~hpy-rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPY-RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCc-chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 6666777773212221 112222234455556788889999999999999999888877666666655543 45666
Q ss_pred CCchHHHHHHHHhhhc
Q 007424 197 GSGLKGLVSCLLGFLS 212 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~ 212 (604)
.||..+++|.+.-|=.
T Consensus 194 VPfYRQlLp~~n~~k~ 209 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFKN 209 (262)
T ss_pred hhHHHHhhhhhhhhcc
Confidence 6999999998876653
No 295
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=40.85 E-value=93 Score=27.23 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHH
Q 007424 445 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISY 498 (604)
Q Consensus 445 ~~~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~deis~ 498 (604)
=|+..|=+||.++|++.-..|+-=+.-...-++.+..|.+.+..|--+++.+..
T Consensus 4 ~D~~~lv~~l~~~e~~~~~~l~~~~~~~~~k~sa~~~l~s~l~~l~~~~~~L~~ 57 (99)
T PF02465_consen 4 IDTESLVDQLMQAERAPIDRLQQKKTSLEWKQSAYGSLNSKLSTLQSALSDLNS 57 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 378889999999999999888888888999999999999999999988877754
No 296
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.59 E-value=9.4e+02 Score=31.16 Aligned_cols=69 Identities=20% Similarity=0.101 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+-.++|.|..-|.+++-+.|+-|...+|.|-..-+ ..+..| ..+...+=.+=+|+..+||=+ .++..|+
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~-~~~~~~fl~r~~D~~~~vR~~---~v~~~~~ 326 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETY-DDLWSAFLGRFNDISVEVRME---CVESIKQ 326 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccc-hHHHHHHHHHhccCChhhhhh---HHHHhHH
Confidence 34567888888889999999999999999887555 333333 344444444556999999955 4444444
No 297
>PF05536 Neurochondrin: Neurochondrin
Probab=40.24 E-value=3.5e+02 Score=31.38 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhhhhhh--c-cchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhc
Q 007424 97 ALQATCISTVSSLSPRV--G-ASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLK 172 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l--~-d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~ 172 (604)
.-++-++-.+++|+..= . ++.+..-++.|++.+....+..+..=+..||.+++ +.++.....+. .-++.|++.+.
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH
Confidence 34555555555555410 0 12344588888888854444367777888898888 33332212221 14455555555
Q ss_pred CCchhHHHHHHHHHHHHHh-cCc----CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC----------cch
Q 007424 173 SEVFKAKAAGLVVVGSVIG-SGA----VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK----------DAV 237 (604)
Q Consensus 173 s~~~kaK~alLsaIGSiA~-ag~----~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g----------e~f 237 (604)
+..+ .+..++.++..+.. .+. .....+..+++.|..-+....-..+-.+++.|+.+-...+ ...
T Consensus 151 ~~~~-~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 NQSF-QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred hCcc-hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4433 34444444444333 331 1224444555666555554444445556666666554321 123
Q ss_pred hhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 238 PEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
.....-+..+|.+ |-- +.-|+.+......+=++-|
T Consensus 230 ~~l~~gl~~iL~s-r~~--~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 230 SDLRKGLRDILQS-RLT--PSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHHHhc-CCC--HHHHHHHHHHHHHHHHHhC
Confidence 3333445555653 222 3347777766666655543
No 298
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.21 E-value=1.3e+02 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag 193 (604)
.-+.++|.-|.+-|++.+.++|-=+|-+|--+..-|
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 447777777888888777777776666666555444
No 299
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=39.27 E-value=71 Score=30.75 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=53.3
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
+.+.+=+.+++.-+|+++..++..+... ......+-.+++.+.++.+..||.+.+.||..+.-.-++...+|+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 5666668888888888888888877766 22234566677777677788888888888877776666555555544
No 300
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=39.04 E-value=1.4e+02 Score=26.68 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=44.4
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--h--hHHHHHHHHHHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--A--FVTMLKLLSDAL 129 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~--~~sllkPL~eaL 129 (604)
.+.||++.|+.+|...+.--.+.||.-++..|..|-+++.+. + ...+++..++.|
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998542 1 222677766666
No 301
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.91 E-value=59 Score=29.44 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhHH-----HHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007424 448 STIRNQLVQIEQQQSSL-----LDLLQRFIGRSESGMQSLETRVLGLELALDEI 496 (604)
Q Consensus 448 ~~ir~ql~qiE~qQs~l-----~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~dei 496 (604)
....+.|.+||.+-.+| +.-||.-|+.-.--|..|+.++.|+++.++=+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33489999999999888 88899999998888999999998888877643
No 302
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.70 E-value=3.3e+02 Score=25.36 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=51.7
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhH-HHHHHHHHHHhcCC-chh-HHHHHHHHHHHHHh
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLKSE-VFK-AKAAGLVVVGSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL-~~L~~RL~klL~s~-~~k-aK~alLsaIGSiA~ 191 (604)
.++-|-.-| ...++++|..|..-|+.++.+.+.... ++. .+.+.+|.++++.+ +.. +|.-++.+|..-+.
T Consensus 38 a~r~l~krl-~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRL-NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 344444555 467899999999999999999887653 332 33788899999876 333 78888888887765
No 303
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.37 E-value=3.6e+02 Score=25.68 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHh
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s------~~~kaK~alLsaIGSiA~ 191 (604)
++-|..-| .+.++++|.-|-..|+++++|.+......+ ...+..|.+++.. .+..+|.-++.+|..-+.
T Consensus 40 ~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 40 VRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34444444 577899999999999999999987553222 2255667788752 467888888888887664
No 304
>PRK09169 hypothetical protein; Validated
Probab=36.63 E-value=1.3e+03 Score=31.75 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=120.2
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHH-H------HhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccc
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDS-I------AATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP 78 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~-l------A~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p 78 (604)
-+++-.|.|+.|.+.++.|+..|=. + ...+.+..+.-.|..|..- ...+.-|+++..+.+.+++.. ....
T Consensus 544 AN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKW--P~~~acr~Aa~aLA~rla~~~~~~~a 621 (2316)
T PRK09169 544 ANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKW--PDEDACRAAAEALAGRLARDAGLLDA 621 (2316)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhC--CCchhHHHHHHHHHHHHHhccccccc
Confidence 4567789999999888888877633 3 3456776688888888743 223456777877777777655 4444
Q ss_pred cHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccch-----hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 79 YITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASA-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 79 ~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~-----~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
+-+.=|..+...|.= |+. ..|..+...|+..+.+.+ |.. -+-.++.+|..=.+......|+.+|+.-+-.
T Consensus 622 fn~Q~lAN~LnALSKWP~~---~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~ 698 (2316)
T PRK09169 622 FNAQDLANLLNGLSKWPDE---DDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAR 698 (2316)
T ss_pred cCHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhc
Confidence 444444544444432 443 467777777777775421 111 4566667774334444666677777655432
Q ss_pred c----CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---cCcC-CchHHHHHHHHhhhcCCcHHHHHHHH
Q 007424 152 A----QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---AVDG-SGLKGLVSCLLGFLSSQDWAARKAAA 223 (604)
Q Consensus 152 a----~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag---~~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAa 223 (604)
. .+...+-+..++.-|.|....+. ++.+.....+.++... .+|. +.+..++..|..+. ++..-|.++.
T Consensus 699 ~~~~~~~f~aq~lAn~LnAlsKwp~~~a--cr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp--~~~~c~~a~~ 774 (2316)
T PRK09169 699 EAGLRQAFDAQGVANALNALSKWPEEEA--CRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWP--QEPACQQAAL 774 (2316)
T ss_pred chhhhhhcCHHHHHHHHHHHHhccCccH--HHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 2 12223456666666777765543 5555555555444421 1233 45555555555543 3344444443
Q ss_pred HH
Q 007424 224 EA 225 (604)
Q Consensus 224 Da 225 (604)
..
T Consensus 775 ~L 776 (2316)
T PRK09169 775 LL 776 (2316)
T ss_pred HH
Confidence 33
No 305
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=35.65 E-value=3.7e+02 Score=25.65 Aligned_cols=72 Identities=10% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH----H--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----T--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~----s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
...+..|.+||+.+++.|.--++.-|-.++..+.. .|| + |+.-|...+....++.|+......+..--+...
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45677889999999999988899999999888853 233 2 777766666433466777777777777766654
No 306
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=35.13 E-value=4.9e+02 Score=31.43 Aligned_cols=150 Identities=13% Similarity=-0.025 Sum_probs=89.1
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-c
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-S 192 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-a 192 (604)
+++|-+..|-...+.++..++|.||..+.-+..... .|+ .+.+|-|+++|..++-.+.-++.++++=++. +
T Consensus 519 vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~-~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 519 VVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS-EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch-hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 566645555334578899999999988877643222 232 2356779999999988877777778875552 1
Q ss_pred C-cCcCCchHHHHHHHHhhhcC------CcHHHHHHHHHHHHHHHHHc----Ccchhh-hhhHHHHHHHhccCcchhHHH
Q 007424 193 G-AVDGSGLKGLVSCLLGFLSS------QDWAARKAAAEALWRLAVVE----KDAVPE-FKGKCLKIFESKRFDKVKVVR 260 (604)
Q Consensus 193 g-~~f~pyf~~lm~~L~e~L~s------~Dw~lRkaAaDaLg~LA~~~----ge~f~p-y~~~~i~~Le~cRfDKvK~VR 260 (604)
- ... .-...|+-|.++|.+ -+|++=.+++-+|..|.+.- .+.|.- ..+..+.+.-+ ++-.|.++
T Consensus 598 rnk~l--igk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~S~k~~k 673 (717)
T KOG1048|consen 598 RNKEL--IGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QHSPKEFK 673 (717)
T ss_pred hhhhh--hhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cCCHHHHH
Confidence 1 111 113467777777742 46888778888887776421 233322 11333333333 66677777
Q ss_pred HHHHHH--HHHHHhCCC
Q 007424 261 EVMNKM--IEAWKQVPD 275 (604)
Q Consensus 261 da~~~A--L~~wK~i~~ 275 (604)
-+..-. |-.+|++-.
T Consensus 674 aAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 674 AASSVLDVLWQYKELHF 690 (717)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 654443 344445543
No 307
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.01 E-value=9.3e+02 Score=29.50 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh--cC-cCcC----CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG--SG-AVDG----SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~--ag-~~f~----pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
+..-+=+..+.++|++.+|-.+-+.+.+.|-++. +- ++.. +-+..+|..|.+.|.+...-+|--|+..+..|-
T Consensus 295 ~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kif 374 (1128)
T COG5098 295 GIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIF 374 (1128)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 3444456779999999999999999998887763 21 2222 344556777777778888999999999999887
Q ss_pred HHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHH
Q 007424 231 VVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 231 ~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL 267 (604)
.--..+.. -+..++...-.|-.||-..||.-+..-.
T Consensus 375 dl~sk~~~-~r~ev~~lv~r~lqDrss~VRrnaikl~ 410 (1128)
T COG5098 375 DLNSKTVG-RRHEVIRLVGRRLQDRSSVVRRNAIKLC 410 (1128)
T ss_pred hCcccccc-hHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 63322222 3345555555566699999998776543
No 308
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=34.38 E-value=1e+03 Score=32.87 Aligned_cols=117 Identities=18% Similarity=0.068 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
++-..+..+|.+.+...=....-++|..+..++... .+++..+..+.+-+.+..-.-|-+|+-.+..++..++..|-|+
T Consensus 93 ~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~ 172 (2341)
T KOG0891|consen 93 RLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPY 172 (2341)
T ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHH
Confidence 344444555544433322233345555444445444 5666778888887755566667888999999999999888889
Q ss_pred hhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCC
Q 007424 241 KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSE 278 (604)
Q Consensus 241 ~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~ 278 (604)
...+.+-+-.-=.|.=..+|+.+..||.+.-.+....+
T Consensus 173 ~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 173 VNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred HHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 88888888888889999999999999999877766644
No 309
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=34.02 E-value=1.8e+02 Score=27.88 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhc----C-cCcCCchHHHHH
Q 007424 132 EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGS----G-AVDGSGLKGLVS 205 (604)
Q Consensus 132 eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~a----g-~~f~pyf~~lm~ 205 (604)
.+.+.+...|..|+.++.+...+ -..+.+..+++.+ .......+-.++.++.++..+ | ..|. -+.+++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~--~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAARE----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL--SEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC--TTTHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh--hhhHHH
Confidence 46778999999999999766543 3444444444333 333333444455555555432 2 1222 123556
Q ss_pred HHHhhhc--CCcHHHHHHHHHHHHHHHH
Q 007424 206 CLLGFLS--SQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 206 ~L~e~L~--s~Dw~lRkaAaDaLg~LA~ 231 (604)
.|.+... .++-.+..+++++|..=+.
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 6666666 6788888889998887443
No 310
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.69 E-value=78 Score=30.17 Aligned_cols=29 Identities=31% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
..+..|..+|.+.+..+|+.|+|.|+.|.
T Consensus 158 ~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 158 DSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34778888888999999999999999875
No 311
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=33.08 E-value=3.9e+02 Score=31.75 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHHhcCCchhH
Q 007424 137 AQVGAALCLAATIDAAQD--PDAGKLGRMEVRLERLLKSEVFKA 178 (604)
Q Consensus 137 vQ~~AA~cLaalIE~a~d--~i~~yL~~L~~RL~klL~s~~~ka 178 (604)
++-+|.--|.++|+.+.+ .+.+.+.+|-|++-.+|++...-+
T Consensus 379 ~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gV 422 (650)
T KOG2188|consen 379 VHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGV 422 (650)
T ss_pred hCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchH
Confidence 344667778899998764 345788999999999998886554
No 312
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.94 E-value=62 Score=30.89 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=43.6
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+-..+...|++.|-++++.|.+||.+.-. +.+.||++...++++ |+ ..|| .|-.|.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~Lld----d~--~frd----eL~~f~ 73 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLENLLD----DK--TFRD----ELTTFN 73 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHHHcC----cc--hHHH----HHHhhc
Confidence 345667788899999999999999987322 689999999999999 53 4454 455663
No 313
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.31 E-value=6.2e+02 Score=36.00 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=50.9
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
..|+++|.+...+.+...++.+++++.++-+.+ ...|..+.+++.++..=-|+.-.=+..-+.++++|.+
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 467788888888888899999999999984433 4556777777777777777765555555555555554
Q ss_pred hh
Q 007424 112 RV 113 (604)
Q Consensus 112 ~l 113 (604)
.+
T Consensus 1063 ~~ 1064 (3550)
T KOG0889|consen 1063 SM 1064 (3550)
T ss_pred hc
Confidence 44
No 314
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.26 E-value=1.5e+02 Score=29.05 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCC-----h-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 27 KELDSIAATVDPTL-----L-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 27 ~eLD~lA~~L~pe~-----i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
..||.|....||-. + --||..|..-.....-..+..++.+||.+-.|+.|.|. +..|...|..+-.
T Consensus 41 ~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~L--------I~~L~~~d~~lA~ 112 (154)
T PF11791_consen 41 FLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPL--------IDLLKSDDEELAE 112 (154)
T ss_dssp HHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHH--------HHGG--G-TTTHH
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHH--------HHHHcCCcHHHHH
Confidence 56888999888765 2 46888887655555557799999999999999976554 4567777888888
Q ss_pred HHHHHHHhh
Q 007424 101 TCISTVSSL 109 (604)
Q Consensus 101 Ac~~aLg~L 109 (604)
+|+++|...
T Consensus 113 ~Aa~aLk~T 121 (154)
T PF11791_consen 113 EAAEALKNT 121 (154)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHHhh
Confidence 888887654
No 315
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=31.00 E-value=9.7e+02 Score=31.16 Aligned_cols=126 Identities=16% Similarity=0.072 Sum_probs=80.6
Q ss_pred HhhccCCCh---hHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 88 TRNFRDKNS---ALQATCISTVSSLSPRVGA-SAFVTMLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 88 vrrLkDpDs---~VR~Ac~~aLg~LAe~l~d-~~~~sllkPL~eaL~-~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
.++..+.-+ -.-+++.+++..+-..... .-..+.+.-|..... +.+++.-|.-++.|+.+++-- ....+-|.+
T Consensus 854 ~~~~~gs~~~~~el~q~~~k~~t~lI~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r--~i~~~eL~~ 931 (1364)
T KOG1823|consen 854 RKRHSGSPSTNFELCQDSFKGFTALIAQVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSR--KIMLPELYE 931 (1364)
T ss_pred HHhhcCCCcccHHHHHHHHHHHHHHHHHhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc--cccchHHHH
Confidence 355555222 3677888888777666532 112225555555553 357888999999999999863 223455899
Q ss_pred HHHHHHHHhcCCch-----hHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHH
Q 007424 163 MEVRLERLLKSEVF-----KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAAR 219 (604)
Q Consensus 163 L~~RL~klL~s~~~-----kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lR 219 (604)
+|..+.+.+..++. +++...+..+|| +....|++...+..|..-..++--.+|
T Consensus 932 imd~v~e~~v~~~~~~~r~qcre~~~~~~~s----~s~~~k~~~~~V~~l~~~~esg~esvr 989 (1364)
T KOG1823|consen 932 IMDKVRETMVRNHSKEIRLQCREVFYSFLGS----KSKLEKQMEFMVDNLLYEVESGRESVR 989 (1364)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhh----cchhhHHHHHHHHHhhhhhhcccchhc
Confidence 99999998866543 477778888882 223346777766666655555555556
No 316
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=30.24 E-value=17 Score=39.37 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCccc
Q 007424 442 KDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMT 508 (604)
Q Consensus 442 ~~~~~~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~deis~dla~ssgr~~ 508 (604)
-+++||..||+-|.-||-.+.+| +.=+++-..-|..|+++...|+.+|+++.-+|.--++.+.
T Consensus 25 ~s~GDLs~I~eRLsaLEssv~sL----~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~ 87 (326)
T PF04582_consen 25 TSPGDLSPIRERLSALESSVASL----SDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVT 87 (326)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999998876 3446666666777777777777777777666655444444
No 317
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=30.08 E-value=26 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.4
Q ss_pred HHHHHHHhhccCCChhHHHHH
Q 007424 82 KIINSITRNFRDKNSALQATC 102 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac 102 (604)
.|+|+|...|+++|-.+|-|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRLAS 23 (24)
T ss_dssp THHHHHHHTT--HHHHHHHHH
T ss_pred cchhHHHhccCCHHHHHHHhc
Confidence 689999999999998888664
No 318
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.07 E-value=1.6e+02 Score=26.29 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007424 445 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEI 496 (604)
Q Consensus 445 ~~~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~dei 496 (604)
.-..-|++.+.+++.+...|-..||. +.-+|..|..||.+++++
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~--------Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQ--------IDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 44566788888888888777666664 678999999999887654
No 319
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=28.86 E-value=2.1e+02 Score=33.51 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC-CchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhH
Q 007424 24 QAAKELDSIAATVDPTLLPTFLSCILSTNSSDK-PGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~k-p~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
.-+..+..+.+.+.|+.|...+.++.....+.. ...|-+...-|+.++... .-.+-+|.++....-.|+|.+.-|
T Consensus 460 ~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll 539 (559)
T PF14868_consen 460 LLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLL 539 (559)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHH
Confidence 334445566677888888777888776653333 346666677777776555 222456666666677899999999
Q ss_pred HHHHHHHHHhhhhhh
Q 007424 99 QATCISTVSSLSPRV 113 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l 113 (604)
++-|++|.|.+|+..
T Consensus 540 ~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 540 HQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999876
No 320
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.55 E-value=1.3e+02 Score=32.29 Aligned_cols=89 Identities=11% Similarity=0.180 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhh--cCCCChHHHHHhhhhcCCCCCCchhHHHH--HHHHHHHhhh---------cccccHHHHHHHHHhh
Q 007424 24 QAAKELDSIAAT--VDPTLLPTFLSCILSTNSSDKPGVRKECI--HVIATLSNSH---------NLSPYITKIINSITRN 90 (604)
Q Consensus 24 ~A~~eLD~lA~~--L~pe~ip~fL~~L~e~~ss~kp~~RKaaI--~lLGvLae~h---------~i~p~L~kIl~~Ivrr 90 (604)
...+.++.+... +|++.-=.|+..|.=+..=.+...|+.++ +++++.+-.| .+..+=|.++..++..
T Consensus 194 s~~~i~~~~~~~~~iP~~~~f~ll~riR~A~af~~~~~R~~~l~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eL 273 (329)
T PF06012_consen 194 SLQQILDKLMEDYNIPKESRFELLHRIRVAKAFSSSSYRRQLLQIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVEL 273 (329)
T ss_pred CHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHH
Confidence 456778899998 89888434455553222222334477655 5555554433 1222333455666666
Q ss_pred ccCCCh---hHHHHHHHHHHhhhhh
Q 007424 91 FRDKNS---ALQATCISTVSSLSPR 112 (604)
Q Consensus 91 LkDpDs---~VR~Ac~~aLg~LAe~ 112 (604)
|+-.+. .||-+|..+|.+|+.+
T Consensus 274 i~~~~~v~~~i~~~Al~~L~ai~~~ 298 (329)
T PF06012_consen 274 ISPEEKVPMDIQTAALRALEAISHK 298 (329)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 655443 2677777777776664
No 321
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=28.43 E-value=82 Score=28.20 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=46.0
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--c-ccccHHHHHHHHHhhccCC
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRDK 94 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~-i~p~L~kIl~~IvrrLkDp 94 (604)
++.|+.++.-...|-.+.+|..+++.|.++-+.+ . +..+..+|++..+..|.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 5677777777788999999999999999999888 3 7788899999888888665
No 322
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.32 E-value=4.9e+02 Score=24.20 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=53.8
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH------HHHHHHHHHccCCChh-HHHHHHHHHHHHHhhcC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT------MLKLLSDALFTEQDTN-AQVGAALCLAATIDAAQ 153 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s------llkPL~eaL~~eqdk~-vQ~~AA~cLaalIE~a~ 153 (604)
...+..|.+||+.+++.|.--|+..|..+...+.. +||. |+..|...+....... |+..+...+..--+...
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 34456789999999999998899999999988743 2332 7777776664333322 66666666666655543
Q ss_pred -CCChhhHHHHH
Q 007424 154 -DPDAGKLGRME 164 (604)
Q Consensus 154 -d~i~~yL~~L~ 164 (604)
++..+++..+.
T Consensus 115 ~~~~~~~i~~~y 126 (133)
T smart00288 115 NDPDLSQIVDVY 126 (133)
T ss_pred CCCCchHHHHHH
Confidence 33344444433
No 323
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=28.13 E-value=6.5e+02 Score=25.58 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHhhhcCChhH----HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC----------------------------CC
Q 007424 8 SVNGLLNKLSDRDT----YSQAAKELDSIAATVDPTL-LPTFLSCILSTN----------------------------SS 54 (604)
Q Consensus 8 rvl~~L~KLsDrDT----~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~----------------------------ss 54 (604)
.+.+.++.+....+ ...-...+..+..+.|++. ||. |+.+.=.. .+
T Consensus 43 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~-lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 121 (268)
T PF08324_consen 43 SLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPA-LDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS 121 (268)
T ss_dssp HHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHH-HHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT
T ss_pred HHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhH-HhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC
Confidence 35555566555443 4445566667777788877 443 44332111 11
Q ss_pred CCCchhHHHHHHHHHHHhhh----cccccHH-HHHHHHHhhccCC---ChhHHHHHHHHHHhhhhhhccch----hHH-H
Q 007424 55 DKPGVRKECIHVIATLSNSH----NLSPYIT-KIINSITRNFRDK---NSALQATCISTVSSLSPRVGASA----FVT-M 121 (604)
Q Consensus 55 ~kp~~RKaaI~lLGvLae~h----~i~p~L~-kIl~~IvrrLkDp---Ds~VR~Ac~~aLg~LAe~l~d~~----~~s-l 121 (604)
..+..+-=++|+|..+-... .+..|.. .|+..+....... +..+|-|++-.+=.+|-++.+.+ ... +
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 22333444445555552211 4445555 5666666555554 67788888877777776665422 111 3
Q ss_pred HHHHHHHHcc-CCChhHHHHHHHHHHHHH
Q 007424 122 LKLLSDALFT-EQDTNAQVGAALCLAATI 149 (604)
Q Consensus 122 lkPL~eaL~~-eqdk~vQ~~AA~cLaalI 149 (604)
+.-+.+.+.. +.++.+.-.+..||..++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 3333332211 234445555555555555
No 324
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=1.5e+03 Score=29.80 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHH--HHHHHHhhhc------CCcHHHHHH-------HHHHH
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKG--LVSCLLGFLS------SQDWAARKA-------AAEAL 226 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~--lm~~L~e~L~------s~Dw~lRka-------AaDaL 226 (604)
|.-.|.++-++..+.+|+.+...+--|+. -|-.+++.... +...|.+.|. -++|+-.+. .+-+|
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 55667788888899999887776666664 45555542221 2233344443 145554443 67889
Q ss_pred HHHHHHcCcchhhhh---------hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 227 WRLAVVEKDAVPEFK---------GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 227 g~LA~~~ge~f~py~---------~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.||....+.|..+. +..+..|...-||--+.+-=|++.++|.+
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 999998887777654 55666666777899999999999999864
No 325
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=27.72 E-value=1.1e+03 Score=27.87 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=52.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHh----hhcCCcHHH
Q 007424 146 AATIDAAQDPDAGKLGRMEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLG----FLSSQDWAA 218 (604)
Q Consensus 146 aalIE~a~d~i~~yL~~L~~RL~klL~-s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e----~L~s~Dw~l 218 (604)
+.++....+ ..+.+++-.+..++. ++.-.+|.+++..++++.. .|. +-. +.+.|.|.+ .|.+.+|.+
T Consensus 466 ~~~~~~l~~---~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~---~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll 539 (559)
T PF14868_consen 466 SFFIQLLDP---QLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGK---LFIPESDQNPVSPALSELFHMLLADRHWLL 539 (559)
T ss_pred HHHHHhcCh---HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhcc---ccCCccccchhhhHHHHHHHHHhcCCcHHH
Confidence 444444443 345556666677774 3455699999999996653 222 111 134444433 457899999
Q ss_pred HHHHHHHHHHHHHHc
Q 007424 219 RKAAAEALWRLAVVE 233 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ 233 (604)
+--|+++.+.+|..-
T Consensus 540 ~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 540 HQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998743
No 326
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=27.64 E-value=5.3e+02 Score=24.42 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH------HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT------MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s------llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
-..-+..|.+||+.+++.|.--|+..|-.+...+.. +||. |+.-|...+....++.|+..+...+..--+...
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 345667889999999999988889999999888743 2332 676666655334456677777777766666544
No 327
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=27.26 E-value=7.2e+02 Score=27.01 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=71.0
Q ss_pred CchhHHHHHHHHH----HHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc--cchhHHHHHHHHHHH
Q 007424 57 PGVRKECIHVIAT----LSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG--ASAFVTMLKLLSDAL 129 (604)
Q Consensus 57 p~~RKaaI~lLGv----Lae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~--d~~~~sllkPL~eaL 129 (604)
+...|+|+.++.+ .++.. .+.|.=-+-|..-+.+|..-++....+.+.-+-....... -.+-..|++-+++.-
T Consensus 10 sg~qKAAilLl~lGee~aa~vlk~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~a 89 (338)
T TIGR00207 10 TGKQKAAILLISIGEDRSAEVFKHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKA 89 (338)
T ss_pred ChHhHHHHHHHHhCcHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHh
Confidence 4678899988776 34444 5555544556666777888777655444332222221110 011223656555544
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHH-HHHHhcCCchhHHHHHHHHHHH
Q 007424 130 FTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVR-LERLLKSEVFKAKAAGLVVVGS 188 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~R-L~klL~s~~~kaK~alLsaIGS 188 (604)
+++. + |..-|+.+....... ..++|..+=|+ |..+|.+.+.+.-+.+|+.++.
T Consensus 90 lg~~-~-----a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~EhPQ~iAliLs~L~p 144 (338)
T TIGR00207 90 LGEE-K-----AASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQEHPQTIALILSHLDP 144 (338)
T ss_pred cCHH-H-----HHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHccCHHHHHHHHHcCCH
Confidence 4321 1 223344444332222 35677777664 7889999999988888887775
No 328
>COG5412 Phage-related protein [Function unknown]
Probab=26.91 E-value=8.6e+02 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=13.7
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
-..+++.-..|-+--..++++++..+
T Consensus 213 ~e~Fr~~v~~Vid~I~~gf~ql~~~~ 238 (637)
T COG5412 213 SESFRNAVRGVIDTIAQGFVQLAWSL 238 (637)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555
No 329
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.79 E-value=1.4e+03 Score=29.15 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhHH
Q 007424 24 QAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~VR 99 (604)
+|-..|..|..+- ++-+...+... -.+ ++.+-.. .|.++|+.+ +..-...+||..+.=.+-|++..||
T Consensus 489 lgr~AL~nLL~~N-~dLl~~~IdrC---Yss-~~~va~g---YF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR 560 (1120)
T PF14228_consen 489 LGRRALKNLLEHN-PDLLDWVIDRC---YSS-SPRVAEG---YFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIR 560 (1120)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHh---cCC-ChhHHHH---HHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHH
Confidence 3555565555432 22233333333 222 2344344 445555554 3333577999999999999999999
Q ss_pred HHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhH
Q 007424 100 ATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKA 178 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~ka 178 (604)
..|..=|..|................-..+ ...-|.+...+..-|.+-.-...... .+.+-+++.|++..+.. ..
T Consensus 561 ~~A~qLL~~Le~R~~~~s~~~~~~~f~~si-~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~~~~~---~~ 636 (1120)
T PF14228_consen 561 SKAMQLLRALEERFFSSSGSEKSGDFRESI-SSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFNAVPP---DA 636 (1120)
T ss_pred HHHHHHHHHHHHHhhcccccccccceehhc-cCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCh---hH
Confidence 999998888875542111000112222233 34455666666666655555544333 34566666666655533 23
Q ss_pred HHHHHHHHH
Q 007424 179 KAAGLVVVG 187 (604)
Q Consensus 179 K~alLsaIG 187 (604)
|..+|.++-
T Consensus 637 rr~mL~~Ll 645 (1120)
T PF14228_consen 637 RRDMLAYLL 645 (1120)
T ss_pred HHHHHHHHH
Confidence 444444443
No 330
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.71 E-value=7.1e+02 Score=25.53 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=89.7
Q ss_pred CCCCchhHHHHHHHHHHHhhh----cccccHHHHH-------HHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHH
Q 007424 54 SDKPGVRKECIHVIATLSNSH----NLSPYITKII-------NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122 (604)
Q Consensus 54 s~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl-------~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sll 122 (604)
++++.+-|.+|.+++.+=... ...+....+| ..|+..+.+..++||-+|.+=+-.+.-.....+.
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~---- 79 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSS---- 79 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---T----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCC----
Confidence 457788889998888874443 2344444443 4566777777788888887655555433321110
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh--hhH----HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA--GKL----GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 123 kPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~--~yL----~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
+..+.-....-..|+.+-.+ .+++ ..| ..|+.+|+..|.+++ ..-..+..+|.+++...+.=
T Consensus 80 ---------~~~~~~~~~~d~SL~~vp~~--Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~insL~~Iak~R 147 (239)
T PF11935_consen 80 ---------DSPPRRGSPNDFSLSSVPPN--HPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINSLSNIAKQR 147 (239)
T ss_dssp ---------TS---GGGTTS--GGGS-TT---SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHHS
T ss_pred ---------CCccccccccCCCHHHcCCC--CCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHh
Confidence 00000000001112211111 1111 112 458888899998776 22234555666666544444
Q ss_pred CCchHHHHHHHHhhhcCC-------cHHHHHHHHH-HHHHHH-HHcC-cchhhhhhHHHHHHH
Q 007424 197 GSGLKGLVSCLLGFLSSQ-------DWAARKAAAE-ALWRLA-VVEK-DAVPEFKGKCLKIFE 249 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~s~-------Dw~lRkaAaD-aLg~LA-~~~g-e~f~py~~~~i~~Le 249 (604)
+.|+..++++|..|-.+. ...+-+..++ +|-..- ...+ ....||.+++.+.|+
T Consensus 148 P~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 148 PQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp GGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHH
Confidence 567778888888876532 1222222222 222211 1233 444589899999988
No 331
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=26.55 E-value=1.8e+02 Score=28.05 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhh----HHHhhhhhHHHHHHHHH
Q 007424 445 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQ----SLETRVLGLELALDEIS 497 (604)
Q Consensus 445 ~~~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~----~Le~rV~gLE~a~deis 497 (604)
+=|..||-|.+||=-|=+.++|.+|.=.+.-..-+. .+++|+-.|..+|++.-
T Consensus 20 nvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~al 76 (140)
T PF04513_consen 20 NVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDAL 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988864444444333 36667776666665543
No 332
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=26.17 E-value=7.1e+02 Score=33.08 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=110.1
Q ss_pred cccccHHHHHHHHHhhccC---CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHH---HHH
Q 007424 75 NLSPYITKIINSITRNFRD---KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL---AAT 148 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkD---pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL---aal 148 (604)
.+.|-+..|+..|+--|+. ++...-.||+..|+.|+.+-- ..-.++-.+--||.++.. -..-..|+ ..+
T Consensus 1390 kv~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~y---~rkaWrKe~~eLF~D~~f--Fqmd~s~l~~W~~I 1464 (1749)
T KOG3613|consen 1390 KVVPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQY---TRKAWRKEFLELFLDNSF--FQMDLSCLRHWSSI 1464 (1749)
T ss_pred hhhhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCch---hHHHHHHHHHHHhcCcch--heeeHHHHHHHHHH
Confidence 4567777777766655555 445577899999999988841 111455555556544432 22224455 888
Q ss_pred HhhcCCCChhhHHHHHHHHH-------HHhcCC--chhHHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHhhhc-CCcH
Q 007424 149 IDAAQDPDAGKLGRMEVRLE-------RLLKSE--VFKAKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLGFLS-SQDW 216 (604)
Q Consensus 149 IE~a~d~i~~yL~~L~~RL~-------klL~s~--~~kaK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e~L~-s~Dw 216 (604)
++.+-......+..||.|+. .++.+. .+..|+++|==|.=++-.+ ..+.+|++.++.+|.+.|. +.+-
T Consensus 1465 id~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~ 1544 (1749)
T KOG3613|consen 1465 IDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSP 1544 (1749)
T ss_pred HHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCc
Confidence 88875555568999999854 455443 4667888776665444333 4567999999999999998 7899
Q ss_pred HHHHHHHHHHHHHHHHc-Ccchhhh
Q 007424 217 AARKAAAEALWRLAVVE-KDAVPEF 240 (604)
Q Consensus 217 ~lRkaAaDaLg~LA~~~-ge~f~py 240 (604)
-+|++..-.+-.|+.-. ++.+.++
T Consensus 1545 ~lk~~vFL~~RVLLLR~Sp~hL~~L 1569 (1749)
T KOG3613|consen 1545 KLKKAVFLFFRVLLLRISPDHLTSL 1569 (1749)
T ss_pred hHHHHHHHHHHHHHHhcCHhhcccc
Confidence 99999999999988744 4777766
No 333
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.03 E-value=7.7e+02 Score=29.34 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=50.2
Q ss_pred HhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhh
Q 007424 33 AATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSP 111 (604)
Q Consensus 33 A~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe 111 (604)
+-.-.|+.+-|+++.+..+....+|..| +.+..|-+|..- .--.-|.+.+|+++-.|+|++- .++-..+.-++.+..
T Consensus 189 Vye~~P~~i~PhlP~l~~lL~q~~p~~~-~ll~~l~~LI~Q-k~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~p 266 (851)
T KOG3723|consen 189 VYEKQPQPINPHLPELLALLSQLEPEQY-HLLRLLHVLIKQ-KQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEP 266 (851)
T ss_pred HHhcCCCccCcccHHHHHHhcCCCHHHH-HHHHHHHHHHHh-ccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCc
Confidence 3344666776667777777777776554 444444443221 1234588999999999999985 467666666666654
Q ss_pred hh
Q 007424 112 RV 113 (604)
Q Consensus 112 ~l 113 (604)
-+
T Consensus 267 v~ 268 (851)
T KOG3723|consen 267 VA 268 (851)
T ss_pred cc
Confidence 43
No 334
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=1.3e+03 Score=28.65 Aligned_cols=208 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhcc
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR 92 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLk 92 (604)
|+++-+=.-++....--.+|++=- .--|+.++.-...+-+|..|.-.++.+|.+.... ...+|+ |-.+|.
T Consensus 75 Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhl------Ir~sl~ 148 (970)
T KOG1988|consen 75 GNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHL------IRISLD 148 (970)
T ss_pred CcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHH------HHHHhc
Q ss_pred CCChhHHHHHHHHHHhhhhhhcc-------------------chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh-c
Q 007424 93 DKNSALQATCISTVSSLSPRVGA-------------------SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA-A 152 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d-------------------~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~-a 152 (604)
.++-.=-+|++.|..++++.-.+ .+....+-|.|..| +.....+-.+--.|+.-+-.. .
T Consensus 149 S~helE~eaa~~Aaa~Faa~sk~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M-~c~at~A~ra~~l~m~lv~~tps 227 (970)
T KOG1988|consen 149 SHHELEVEAAEFAAACFAAQSKDFACSICGKISDMIEFLDLPVPMKLSLIPVFSHM-HCHATGASRAFGLCMSLVSGTPS 227 (970)
T ss_pred CccchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHh-cchhhhhHHHHHHHHHHhcCCCc
Q ss_pred CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q 007424 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~ 231 (604)
.+-...||..+..+ |+.++..+.+. +..|.+|+. ++--.+|+.+++.+..++.
T Consensus 228 ~d~~v~fL~stT~L------------------asrs~~ai~eq--------~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 228 IDRVVAFLYSTTNL------------------ASRSLVAISEQ--------SDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred ccceeeehhhhHHH------------------HHHHHHHhHHH--------HHHHHHhhcCCchhHHHHHHHHHHHHHhh
Q ss_pred HcC-cchhhhhhHHHHHHHhccCcchhHHH
Q 007424 232 VEK-DAVPEFKGKCLKIFESKRFDKVKVVR 260 (604)
Q Consensus 232 ~~g-e~f~py~~~~i~~Le~cRfDKvK~VR 260 (604)
.+- -.+.+....+. +..+==.|++||
T Consensus 282 r~~l~l~s~~rd~a~---~~s~~~~~~~vr 308 (970)
T KOG1988|consen 282 RLALHLLSCERDFAS---EDSSDLEMASVR 308 (970)
T ss_pred hhhheeccchhhhhc---ccchhhhHHHHH
No 335
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=25.51 E-value=2.9e+02 Score=32.51 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh---ccchhHH-HHHHHHHHHcc
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV---GASAFVT-MLKLLSDALFT 131 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l---~d~~~~s-llkPL~eaL~~ 131 (604)
.++||+..||..+-..|+...+.|-+++.+. ++--|- +.-|-|+ +-|-=|..+++
T Consensus 420 ~laPfi~Pii~q~~~~L~~gSs~Vi~ss~~~--Q~evf~d~~~sDPTHSmLSKDHFsNILN 478 (606)
T PF07217_consen 420 LLAPFIRPIIKQVSSELKTGSSEVIDSSADD--QYEVFNDPNCSDPTHSMLSKDHFSNILN 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhc--ccccccCCCCCCCchhhhhhhhhhHHHh
Confidence 6789999999999999998888775554321 221111 1135555 66766776663
No 336
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.09 E-value=3.2e+02 Score=26.04 Aligned_cols=78 Identities=24% Similarity=0.182 Sum_probs=50.9
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc--Cc-C
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA--VD-G 197 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~--~f-~ 197 (604)
-+.-++..|+.+.+..+|..|--||-+.=+ +++.+.-+.|..+++...|+- . +..+....+ .. .
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~-------~~l~pY~d~L~~Lldd~~frd--e----L~~f~~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD-------PYLTPYKDNLENLLDDKTFRD--E----LTTFNLSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHhHHHHHHHHcCcchHHH--H----HHhhcccCCcCCCCH
Confidence 344455566688899999999888876433 577888889999998877663 2 333332221 12 2
Q ss_pred CchHHHHHHHHhhh
Q 007424 198 SGLKGLVSCLLGFL 211 (604)
Q Consensus 198 pyf~~lm~~L~e~L 211 (604)
.+-+.+||.+...|
T Consensus 84 ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 84 EHRPELMPVVLRIL 97 (141)
T ss_pred HHHhHHHHHHHHHH
Confidence 45556777777766
No 337
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.05 E-value=9.8e+02 Score=26.59 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhhcCCCC----h-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccC-
Q 007424 21 TYSQAAKELDSIAATVDPTL----L-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD- 93 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~----i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkD- 93 (604)
..+...+.|-.+..+-+.+. | ..|+..|.+-..+++|..|......|=.+-.-+ ...++|-+.+..+.-+.-+
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e 185 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 34677788888888765433 5 578888888899999999986655554443333 3344444444433333322
Q ss_pred CC-hhHHHHHHHHHHhhhhhhcc--chhHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 007424 94 KN-SALQATCISTVSSLSPRVGA--SAFVT-MLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 94 pD-s~VR~Ac~~aLg~LAe~l~d--~~~~s-llkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
.+ ..--.-+++-+|.+-.-..- .+.|. ++.-.+--|...+ -..-..--++|+..+++.-+ .+...++..|+
T Consensus 186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~ll 261 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLL 261 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHH
Confidence 22 22334455566655544321 11221 2222222221111 11223456788888888643 23444555566
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH--HHHHcCcchhhhhhHH
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR--LAVVEKDAVPEFKGKC 244 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~--LA~~~ge~f~py~~~~ 244 (604)
+.-=-.+..-....|.-|..+.... ..|......+...|..++.++.+++=..|+..+.. +...+.+.-.....-+
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i 341 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPII 341 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHH
Confidence 6653445554567888888887632 45567777888999999999999985555544432 1222222212122234
Q ss_pred HHHHHh-ccCcchhHHHHHHHHHHHHHHhCC
Q 007424 245 LKIFES-KRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 245 i~~Le~-cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
...|+. .+-.=-+.||..+..++..+.++.
T Consensus 342 ~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 342 FPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 555543 444446779999999999998765
No 338
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=24.75 E-value=5.2e+02 Score=24.79 Aligned_cols=93 Identities=8% Similarity=0.084 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcC-------CchhHH-HHHHHHHHHHHh-cCcCcCCchHHHHHHH
Q 007424 137 AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS-------EVFKAK-AAGLVVVGSVIG-SGAVDGSGLKGLVSCL 207 (604)
Q Consensus 137 vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s-------~~~kaK-~alLsaIGSiA~-ag~~f~pyf~~lm~~L 207 (604)
+...+..|+-++|--+.+ .-+.+|.-||+.--.. .....| -+....+.+++. -.+.|.||+..++...
T Consensus 37 vE~~v~~~~~~lV~KLnE---~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~ 113 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNE---ATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNA 113 (153)
T ss_pred HHHHHHHHHHHHHHHccc---chhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555 2334444444433321 122223 223344444443 2356679998888888
Q ss_pred HhhhcC------Cc----HHHHHHHHHHHHHHHHH
Q 007424 208 LGFLSS------QD----WAARKAAAEALWRLAVV 232 (604)
Q Consensus 208 ~e~L~s------~D----w~lRkaAaDaLg~LA~~ 232 (604)
.+.|.. ++ |.++...+.+|......
T Consensus 114 ~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 114 VDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 888842 34 99999999999876554
No 339
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=24.61 E-value=1.6e+02 Score=28.14 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=37.9
Q ss_pred HHHHHhhhcC--ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC
Q 007424 8 SVNGLLNKLS--DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDK 56 (604)
Q Consensus 8 rvl~~L~KLs--DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~k 56 (604)
+++.++.++- +.|...++-..|+.++..|+.+++..+|.++.+-+.+.+
T Consensus 28 ~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr 78 (141)
T PF08625_consen 28 RLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSR 78 (141)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccc
Confidence 4556666654 344444489999999999999999999999998877655
No 340
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=24.40 E-value=2e+02 Score=29.11 Aligned_cols=59 Identities=34% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHH-------HHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCcccCCCCCCCc-cccCC
Q 007424 455 VQIEQQQSSLLDLL-------QRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGAT-CCILP 521 (604)
Q Consensus 455 ~qiE~qQs~l~~ll-------Q~Fmg~s~~~m~~Le~rV~gLE~a~deis~dla~ssgr~~~~~~~~~~-cc~lp 521 (604)
..|=.||++|++.. |-=.=+..+++..|+.||..||.-+++.. .| +.-++.+.. +|-.|
T Consensus 17 ~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~-ll-------~~wGC~~k~~iC~T~ 83 (204)
T PF00517_consen 17 NGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQ-LL-------NIWGCSGKQHICHTP 83 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------SBSS-SSSS-S--B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHH-HH-------HhcccCCCcceeCCC
Confidence 33444444444443 33344666788889999999999887643 22 222355555 78754
No 341
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.38 E-value=2.6e+02 Score=33.39 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=55.5
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHH-----HHHHhh-ccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKII-----NSITRN-FRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl-----~~Ivrr-LkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
-.||..|.++.. ++.+|-.++.+||.++..+ -|||.+|+ ..|++- ..|.+..|-.+|+-+|..|--++..
T Consensus 69 K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~q--p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 69 KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQ--PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcC--CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 467888888877 5789999999999998876 23333332 233332 5688888888888888877666531
Q ss_pred chhHHHHHHHHHHH
Q 007424 116 SAFVTMLKLLSDAL 129 (604)
Q Consensus 116 ~~~~sllkPL~eaL 129 (604)
....+|+-||..+
T Consensus 145 -~l~~~L~~Lf~If 157 (668)
T PF04388_consen 145 -SLGPHLPDLFNIF 157 (668)
T ss_pred -hhhHHHHHHHHHH
Confidence 1222566666555
No 342
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.38 E-value=6.1e+02 Score=23.99 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=47.5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHH-HHHHhcC---CchhHHHHHHHHHHHHHh
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVR-LERLLKS---EVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~R-L~klL~s---~~~kaK~alLsaIGSiA~ 191 (604)
++-|-.-|....++++|.-|-.-|+++++|.+......+ ...+.. |.+++.. .+..+|.-++..|.+-+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 334444443345788998888888999999886553222 235555 6777753 356789999999998775
No 343
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=23.69 E-value=1.1e+03 Score=27.55 Aligned_cols=209 Identities=20% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHhhhcC-ChhHHHHHHHHHHHHHhhcCCCChHH----HHHhhhhcCCCCCCchhHHHHHHHHHHHhh-h------cc
Q 007424 9 VNGLLNKLS-DRDTYSQAAKELDSIAATVDPTLLPT----FLSCILSTNSSDKPGVRKECIHVIATLSNS-H------NL 76 (604)
Q Consensus 9 vl~~L~KLs-DrDT~r~A~~eLD~lA~~L~pe~ip~----fL~~L~e~~ss~kp~~RKaaI~lLGvLae~-h------~i 76 (604)
++-+|+|+- -.|-+|..+..|+.|-+|-..-.... -|..+.=.....+|..=++|.++||.++-- + ++
T Consensus 225 ~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv 304 (832)
T KOG3678|consen 225 VILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV 304 (832)
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 444555542 33455555555555554421111000 011221122233466677777777776321 1 22
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc------chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA------SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d------~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
..-.++-+ .-.-..-|-.+|--+|-|+..|+..--- ...-.++.||+..+ ||.--.. +
T Consensus 305 eKr~~EWL---F~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~----DP~~FAR---------D 368 (832)
T KOG3678|consen 305 EKRAAEWL---FPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL----DPGRFAR---------D 368 (832)
T ss_pred Hhhhhhhh---hhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc----Ccchhhh---------h
Confidence 22222111 1111122555666666677666654210 11112666666665 2211100 1
Q ss_pred hcCCCChhhHHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 151 AAQDPDAGKLGRMEVRLERLLKSEVFKAK--AAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 151 ~a~d~i~~yL~~L~~RL~klL~s~~~kaK--~alLsaIGSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
+.+---+--+.-++||+-+|++....++ .|..-+.-+.+.....-.-.|.. .|+.|.+..++.|-..-|.|-++|
T Consensus 369 -~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 369 -AHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEAL 447 (832)
T ss_pred -hhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1110011224556777778876654443 11111111122111111233433 578888888888888888899999
Q ss_pred HHHHHHcC
Q 007424 227 WRLAVVEK 234 (604)
Q Consensus 227 g~LA~~~g 234 (604)
-.|...++
T Consensus 448 tviGEEVP 455 (832)
T KOG3678|consen 448 TVIGEEVP 455 (832)
T ss_pred HHhccccC
Confidence 88877554
No 344
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=23.03 E-value=2.2e+02 Score=29.97 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-chhHH-----HHHHHHHHHccCCC
Q 007424 61 KECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVT-----MLKLLSDALFTEQD 134 (604)
Q Consensus 61 KaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~~~~s-----llkPL~eaL~~eqd 134 (604)
.+-++++|.|=... ..+=-++..-++++|+-++. ..+.-+|||+|+....- ++.|. .+...++.|+.. +
T Consensus 99 ~emvRl~asLErL~--~~~K~elg~wll~rL~~~~~--~~~~wWAlGRlgaR~p~yGs~h~Vvp~~~~~~wl~~ll~~-d 173 (249)
T PF12531_consen 99 DEMVRLAASLERLP--VEDKIELGEWLLKRLQKPSE--SAQHWWALGRLGARVPFYGSAHNVVPPEVAEQWLDALLAL-D 173 (249)
T ss_pred HHHHHHHHhhccCC--HHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHhcCcccCCcccccCHHHHHHHHHHHHhc-C
Confidence 45666666663322 12233556677888877773 44566999999987532 12111 566677777632 2
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
..-...++.|+..+..-.+|-....-..+-.++++.|+..
T Consensus 174 wk~~~~a~fA~~q~aR~TgDR~rDl~~~~R~~v~~~L~~~ 213 (249)
T PF12531_consen 174 WKKPPPAAFAAVQMARMTGDRARDLPDALRQKVIEKLKAS 213 (249)
T ss_pred CCCCchHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHhC
Confidence 2222245556666665555544444455556666666544
No 345
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=22.35 E-value=4.8e+02 Score=25.03 Aligned_cols=74 Identities=11% Similarity=0.210 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-------CCCCchhHHHH-HHHHHHHhhh--cccccHHHHHHHHHhhc
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS-------SDKPGVRKECI-HVIATLSNSH--NLSPYITKIINSITRNF 91 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s-------s~kp~~RKaaI-~lLGvLae~h--~i~p~L~kIl~~IvrrL 91 (604)
...+.+.+-.|+.-|+-..|-||+..|.+-.. ......|.-++ +++..+++-. ++.||..-++..++.-|
T Consensus 38 E~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L 117 (153)
T PF08146_consen 38 ESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLL 117 (153)
T ss_pred HHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888998888666666655432 22234444443 6666667766 88999999999988888
Q ss_pred cCCC
Q 007424 92 RDKN 95 (604)
Q Consensus 92 kDpD 95 (604)
+.-+
T Consensus 118 ~~~~ 121 (153)
T PF08146_consen 118 KQFN 121 (153)
T ss_pred HHhh
Confidence 6654
No 346
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.16 E-value=2.6e+02 Score=32.92 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhh--cccccHHHHHHHHH--hhc---cCCChhHHHHHHHHHHhhhhhhccc-----h-hHH--HHHHHH
Q 007424 62 ECIHVIATLSNSH--NLSPYITKIINSIT--RNF---RDKNSALQATCISTVSSLSPRVGAS-----A-FVT--MLKLLS 126 (604)
Q Consensus 62 aaI~lLGvLae~h--~i~p~L~kIl~~Iv--rrL---kDpDs~VR~Ac~~aLg~LAe~l~d~-----~-~~s--llkPL~ 126 (604)
.-++++-.+|+.+ .++.+=.+++..++ -+| -...+.+-+.|.+++-.+++.+.++ + |-+ ||+-+|
T Consensus 576 ~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~efL~tvf 655 (748)
T KOG4541|consen 576 DDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREFLRTVF 655 (748)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHHHHHHH
Confidence 3456777788888 78788888888888 444 3455678889999999999888763 1 222 888899
Q ss_pred HHHc-cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 127 DALF-TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 127 eaL~-~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
+.|+ .+-+...-..||-||-.+|-.-+ ....+|...|+..=.+|+ +|.-+..|..
T Consensus 656 ~~ll~~~~~t~l~s~a~~Aly~LI~~e~----~~y~elvneL~skq~np~--~~qrLa~Af~ 711 (748)
T KOG4541|consen 656 HFLLFEDYSTDLVSTAADALYPLILCEP----NLYQELVNELISKQANPN--FKQRLANAFQ 711 (748)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHhCH----HHHHHHHHHHHhhccChH--HHHHHHHHHH
Confidence 8875 44466677888888888876543 234555555554444444 4444444444
No 347
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=22.13 E-value=1.5e+02 Score=33.39 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=47.5
Q ss_pred HHHHHhhcc-CCChhHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 84 INSITRNFR-DKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 84 l~~IvrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
+..+++-|. ..|+.+-..||.=+|.++.+...+.... =.|..+..|+++.|+.|+.-|-.|+.+++
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344444452 3466777888999999999985433221 25677777778899999999999998874
No 348
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=22.09 E-value=5.7e+02 Score=25.94 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=51.9
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc-h---hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A---FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~---~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
.+++.|...|..+|+.|.++|...=..-... . +--+.+=|+-+|-....+-+|..-|.-|+.++....+.
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4678899999999999999666543332221 2 22288889988876666779999999999999987654
No 349
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=21.97 E-value=7.4e+02 Score=30.88 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH------HHHHHHHHHHhcCCchhHH
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL------GRMEVRLERLLKSEVFKAK 179 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL------~~L~~RL~klL~s~~~kaK 179 (604)
+..+++-|+.+|....+| ..+...+..++|+..... .|| +.++.+|+.++....+-+.
T Consensus 504 l~~llP~ll~~l~~~~dP---d~~L~~~~~l~e~i~~~~-~yl~lL~~~p~~l~~L~~l~~~S~~la~ 567 (943)
T PRK11072 504 LDALMPRLLEAACAREDA---DVTLERLLDLLEAISRRT-TYLELLSENPGALKRLISLCAASPWIAE 567 (943)
T ss_pred HHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHhccchH-HHHHHHHHCHHHHHHHHHHHHhCHHHHH
Confidence 334888899998655666 456777888888865422 333 4578888888877766543
No 350
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=21.81 E-value=60 Score=30.10 Aligned_cols=15 Identities=53% Similarity=0.807 Sum_probs=13.0
Q ss_pred HhhhhhHHHHHHHHH
Q 007424 483 ETRVLGLELALDEIS 497 (604)
Q Consensus 483 e~rV~gLE~a~deis 497 (604)
+.||.|||.||+++-
T Consensus 42 ~~rv~GLe~AL~~v~ 56 (115)
T PF06476_consen 42 QHRVAGLEKALEEVK 56 (115)
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999983
No 351
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=21.73 E-value=9.6e+02 Score=25.33 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhccCC-ChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCC--Ch----hHHHHHHHHHHHHHhhc
Q 007424 80 ITKIINSITRNFRDK-NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ--DT----NAQVGAALCLAATIDAA 152 (604)
Q Consensus 80 L~kIl~~IvrrLkDp-Ds~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eq--dk----~vQ~~AA~cLaalIE~a 152 (604)
+.++++....+++-+ |..|+.-=-.--.++|--|.+.....++..+...|.... ++ ..+..+..-|-.++-++
T Consensus 29 v~qlW~l~~~g~q~~~~~q~w~ewW~lWRRiAGGL~~~qQ~~l~~~ia~~l~p~~~~~~~~~~~~~~~~~~emvRl~asL 108 (249)
T PF12531_consen 29 VEQLWKLYQQGIQFPKDAQVWSEWWTLWRRIAGGLNEGQQEQLFDDIAPYLQPAAQRNRKKPKGPQPQSYDEMVRLAASL 108 (249)
T ss_pred HHHHHHHhhcccCCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcccccccccccccCccCHHHHHHHHHhh
Confidence 889999999999988 766654322222333333322223347777777774211 11 12222333332222233
Q ss_pred CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG----SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~----ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.-...++=-+|...|++-|..++... +..=|||-|+. -|....-.-+..+....+.|-..||.....|+-++.-
T Consensus 109 ErL~~~~K~elg~wll~rL~~~~~~~--~~wWAlGRlgaR~p~yGs~h~Vvp~~~~~~wl~~ll~~dwk~~~~a~fA~~q 186 (249)
T PF12531_consen 109 ERLPVEDKIELGEWLLKRLQKPSESA--QHWWALGRLGARVPFYGSAHNVVPPEVAEQWLDALLALDWKKPPPAAFAAVQ 186 (249)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHhcCcccCCcccccCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 22233444556667777776665332 33356665553 2332211113455556666666889999999999999
Q ss_pred HHHHcCc----chhhhhhHHHHHHHhccCc
Q 007424 229 LAVVEKD----AVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 229 LA~~~ge----~f~py~~~~i~~Le~cRfD 254 (604)
||+..|| .=..+...+++.|+..+-.
T Consensus 187 ~aR~TgDR~rDl~~~~R~~v~~~L~~~~ap 216 (249)
T PF12531_consen 187 MARMTGDRARDLPDALRQKVIEKLKASKAP 216 (249)
T ss_pred HHHhcCCcccCcCHHHHHHHHHHHHhCCCC
Confidence 9998884 3344678888888866543
No 352
>COG4889 Predicted helicase [General function prediction only]
Probab=21.60 E-value=79 Score=38.97 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
.|.+-+|+|+|||++..++ -.+.||++|++.+.+
T Consensus 727 qHlITkPiFdALFa~~~qN---Pvsqam~kmv~~l~~ 760 (1518)
T COG4889 727 QHLITKPIFDALFAENIQN---PVSQAMDKMVDKLSD 760 (1518)
T ss_pred HhhhhhhHHHHHhhhcccC---hHHHHHHHHHHHHhh
Confidence 4458999999999765322 235678888888644
No 353
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.50 E-value=56 Score=28.20 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=16.4
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 007424 477 SGMQSLETRVLGLELALDE 495 (604)
Q Consensus 477 ~~m~~Le~rV~gLE~a~de 495 (604)
+...-||.||.-||.+||+
T Consensus 49 ~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 49 AKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999985
No 354
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.65 E-value=3e+02 Score=32.23 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHH
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCL 245 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i 245 (604)
++.|.+..+..++..+|-.|- ........+...+...|.+.|..+|-.-+.++-.+|..|...-. ..+..+..+++
T Consensus 64 ~~DLcEDed~~iR~~aik~lp---~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 64 QLDLCEDEDVQIRKQAIKGLP---QLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHT-SSHHHHHHHHHHGG---GG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHhHH---HHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445556666666655444443 44444456888899999999999999989999999999888665 66666655555
Q ss_pred HHHHhccCcchhHHHHHHHHHHH-HHHhCC
Q 007424 246 KIFESKRFDKVKVVREVMNKMIE-AWKQVP 274 (604)
Q Consensus 246 ~~Le~cRfDKvK~VRda~~~AL~-~wK~i~ 274 (604)
..-+ .| -.||+-+...|. -++.++
T Consensus 141 ~~~~---~d--e~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 141 SSKS---GD--EQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---H---S---HHHHHHHHHHHHHHGGGS-
T ss_pred hccc---Cc--hHHHHHHHHHHHHHHhhCc
Confidence 3211 24 469999888884 344443
No 355
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.54 E-value=3.8e+02 Score=23.57 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=35.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCC
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpD 95 (604)
+..++.|..+. +..+|+....++..|+... .-..++.+-+--+++.+.|-.
T Consensus 38 v~~~i~~~le~----~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~ 89 (113)
T smart00544 38 VKVLLTCALEE----KRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLE 89 (113)
T ss_pred HHHHHHHHHcC----CccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhh
Confidence 34444444432 4579999999999999777 555677777777777776643
No 356
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.48 E-value=61 Score=28.00 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.2
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 007424 477 SGMQSLETRVLGLELALDE 495 (604)
Q Consensus 477 ~~m~~Le~rV~gLE~a~de 495 (604)
+.+.-||.||.-||.+||.
T Consensus 49 ~~a~rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 49 EQAERMEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999984
Done!