Query 007424
Match_columns 604
No_of_seqs 155 out of 246
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 01:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.8 1.2E-20 4.1E-25 184.7 15.7 210 41-261 13-232 (242)
2 2qk1_A Protein STU2; STU2P, XM 99.8 2.5E-20 8.5E-25 186.6 16.1 207 49-263 22-246 (249)
3 4fdd_A Transportin-1; heat rep 99.8 4.6E-19 1.6E-23 202.1 22.6 248 21-270 337-613 (852)
4 2bpt_A Importin beta-1 subunit 99.8 6.1E-18 2.1E-22 189.7 25.2 249 21-271 347-626 (861)
5 1qgr_A Protein (importin beta 99.8 6.9E-17 2.4E-21 181.5 24.3 249 21-271 344-678 (876)
6 1u6g_C TIP120 protein, CAND1; 99.7 5.3E-17 1.8E-21 192.0 21.0 264 7-274 6-286 (1230)
7 2bpt_A Importin beta-1 subunit 99.7 5.4E-16 1.9E-20 173.9 24.7 259 12-271 416-710 (861)
8 1b3u_A Protein (protein phosph 99.7 3.8E-16 1.3E-20 167.1 20.2 258 8-271 242-508 (588)
9 1u6g_C TIP120 protein, CAND1; 99.7 8.6E-16 2.9E-20 181.7 21.0 257 13-269 92-400 (1230)
10 4fdd_A Transportin-1; heat rep 99.7 2.3E-15 7.8E-20 171.7 22.4 249 21-272 190-471 (852)
11 1b3u_A Protein (protein phosph 99.7 1.3E-15 4.3E-20 163.1 18.9 263 4-272 160-431 (588)
12 1qgr_A Protein (importin beta 99.6 7E-14 2.4E-18 157.1 27.6 254 22-275 581-874 (876)
13 1ibr_B P95, importin beta-1 su 99.6 1.5E-14 5.3E-19 150.0 20.7 262 4-271 90-394 (462)
14 1wa5_C Importin alpha RE-expor 99.6 1.3E-14 4.6E-19 168.4 19.2 246 21-271 377-669 (960)
15 1ibr_B P95, importin beta-1 su 99.6 2.6E-13 8.9E-18 140.7 23.7 228 19-249 188-457 (462)
16 2x1g_F Cadmus; transport prote 99.5 1.1E-13 3.9E-18 159.9 18.3 244 21-269 437-719 (971)
17 2x19_B Importin-13; nuclear tr 99.5 3.2E-13 1.1E-17 155.4 20.2 243 22-270 424-712 (963)
18 3ltm_A Alpha-REP4; protein eng 99.4 2.7E-12 9.2E-17 121.7 15.7 189 37-274 17-205 (211)
19 2qk2_A LP04448P; mini spindles 99.4 8.6E-12 2.9E-16 121.8 18.9 191 80-275 13-208 (242)
20 3ltj_A Alpharep-4; protein eng 99.4 8.9E-12 3E-16 117.3 17.3 186 42-272 13-198 (201)
21 2jdq_A Importin alpha-1 subuni 99.4 1.6E-11 5.3E-16 127.5 18.5 249 18-271 163-442 (450)
22 1wa5_B Importin alpha subunit; 99.4 1.6E-11 5.5E-16 132.5 18.8 249 17-270 227-508 (530)
23 2jdq_A Importin alpha-1 subuni 99.3 2.9E-11 1E-15 125.4 19.6 252 17-272 119-390 (450)
24 4b8j_A Importin subunit alpha- 99.3 1.9E-11 6.3E-16 131.5 18.1 253 17-270 215-494 (528)
25 1oyz_A Hypothetical protein YI 99.3 3.3E-11 1.1E-15 119.1 18.0 215 15-270 31-248 (280)
26 2qk1_A Protein STU2; STU2P, XM 99.3 7E-11 2.4E-15 118.1 19.7 198 76-276 13-224 (249)
27 1wa5_B Importin alpha subunit; 99.3 3.3E-11 1.1E-15 130.0 18.6 251 17-272 185-457 (530)
28 1oyz_A Hypothetical protein YI 99.3 6.6E-11 2.3E-15 116.9 18.1 200 37-271 21-220 (280)
29 4hxt_A De novo protein OR329; 99.3 7.6E-11 2.6E-15 112.5 17.5 218 17-240 14-250 (252)
30 3ltj_A Alpharep-4; protein eng 99.3 7.4E-11 2.5E-15 110.9 16.9 181 7-230 17-197 (201)
31 4b8j_A Importin subunit alpha- 99.2 4.1E-10 1.4E-14 121.1 20.9 247 17-270 86-356 (528)
32 3ltm_A Alpha-REP4; protein eng 99.2 2.3E-10 7.8E-15 108.4 16.7 174 18-233 32-205 (211)
33 4hxt_A De novo protein OR329; 99.2 4.5E-10 1.5E-14 107.1 17.7 231 41-276 4-245 (252)
34 4hat_C Exportin-1; heat repeat 99.2 1.6E-10 5.4E-15 136.8 16.1 225 22-248 430-693 (1023)
35 2vgl_B AP-2 complex subunit be 99.2 3.5E-09 1.2E-13 117.1 25.9 256 12-274 91-422 (591)
36 3m1i_C Exportin-1; heat repeat 99.2 1.3E-10 4.5E-15 136.4 14.7 222 22-245 430-690 (1049)
37 4db8_A Armadillo-repeat protei 99.2 5.6E-10 1.9E-14 107.6 16.4 225 40-269 13-248 (252)
38 4db6_A Armadillo repeat protei 99.2 3.7E-10 1.3E-14 106.2 14.2 186 41-231 14-209 (210)
39 4db8_A Armadillo-repeat protei 99.1 1.4E-10 4.6E-15 112.0 11.1 209 17-231 24-251 (252)
40 3ibv_A Exportin-T; karyopherin 99.1 1.3E-09 4.3E-14 128.5 16.6 247 22-276 414-732 (980)
41 3tpo_A Importin subunit alpha- 99.0 6.4E-09 2.2E-13 113.2 19.3 248 22-270 226-495 (529)
42 1w63_A Adapter-related protein 99.0 3.1E-09 1E-13 118.6 16.3 239 21-270 123-377 (618)
43 2vgl_B AP-2 complex subunit be 99.0 4.1E-08 1.4E-12 108.6 22.8 242 12-270 18-266 (591)
44 1wa5_C Importin alpha RE-expor 98.9 1.1E-08 3.8E-13 119.0 17.7 227 21-249 421-687 (960)
45 3ul1_B Importin subunit alpha- 98.9 1.1E-08 3.6E-13 111.2 16.0 248 22-270 207-476 (510)
46 3tpo_A Importin subunit alpha- 98.9 3E-08 1E-12 107.9 19.1 254 17-272 174-449 (529)
47 1xqr_A HSPBP1 protein; armadil 98.9 7.5E-08 2.6E-12 99.0 20.5 167 20-192 55-239 (296)
48 4ffb_C Protein STU2; tubulin f 98.9 2.2E-08 7.7E-13 100.2 15.7 202 48-262 14-235 (278)
49 4db6_A Armadillo repeat protei 98.9 2.1E-08 7.2E-13 94.1 13.9 189 81-270 11-207 (210)
50 3ul1_B Importin subunit alpha- 98.8 5.1E-08 1.7E-12 105.8 16.5 253 17-270 155-428 (510)
51 2db0_A 253AA long hypothetical 98.8 4.1E-07 1.4E-11 88.7 19.4 206 43-262 32-240 (253)
52 2z6g_A B-catenin; FULL-length, 98.7 2.8E-07 9.6E-12 105.6 20.2 253 9-270 117-426 (780)
53 2x1g_F Cadmus; transport prote 98.7 3.5E-07 1.2E-11 105.9 20.5 256 9-270 506-812 (971)
54 1xqr_A HSPBP1 protein; armadil 98.7 1.8E-07 6E-12 96.2 15.4 175 58-232 55-239 (296)
55 2z6h_A Catenin beta-1, beta-ca 98.7 2.5E-06 8.7E-11 94.7 24.7 244 18-270 70-334 (644)
56 1jdh_A Beta-catenin; beta-cate 98.7 2.3E-06 7.7E-11 90.8 22.7 244 18-270 73-337 (529)
57 1jdh_A Beta-catenin; beta-cate 98.7 5.8E-07 2E-11 95.3 17.8 223 41-270 229-487 (529)
58 2iw3_A Elongation factor 3A; a 98.6 1.4E-06 4.7E-11 102.7 21.9 259 16-276 25-328 (986)
59 2x19_B Importin-13; nuclear tr 98.6 2.1E-06 7.1E-11 98.9 22.9 224 21-248 465-731 (963)
60 3now_A UNC-45 protein, SD10334 98.6 7E-07 2.4E-11 103.4 18.8 254 8-270 425-735 (810)
61 3now_A UNC-45 protein, SD10334 98.6 1.2E-06 4E-11 101.6 19.7 254 17-276 507-786 (810)
62 2z6h_A Catenin beta-1, beta-ca 98.6 6.2E-07 2.1E-11 99.6 16.5 249 17-270 236-525 (644)
63 2z6g_A B-catenin; FULL-length, 98.6 1.4E-06 4.9E-11 99.8 20.0 244 18-270 206-470 (780)
64 2vgl_A Adaptor protein complex 98.6 9.5E-07 3.2E-11 99.0 17.3 236 29-270 132-396 (621)
65 1w63_A Adapter-related protein 98.5 2.8E-06 9.6E-11 94.8 20.1 237 18-272 155-414 (618)
66 2vgl_A Adaptor protein complex 98.5 1.3E-06 4.4E-11 98.0 15.5 199 21-231 54-270 (621)
67 3nmw_A APC variant protein; AR 98.5 2.3E-06 8E-11 89.9 16.3 259 4-271 47-333 (354)
68 2of3_A ZYG-9; multifunctional 98.5 1.4E-05 4.8E-10 81.5 20.9 174 56-240 59-245 (266)
69 3nmz_A APC variant protein; pr 98.5 4.1E-06 1.4E-10 91.2 17.9 231 40-270 190-448 (458)
70 3gjx_A Exportin-1; transport, 98.4 2.7E-06 9.3E-11 101.2 17.7 215 27-245 461-716 (1073)
71 2iw3_A Elongation factor 3A; a 98.4 2.1E-06 7.2E-11 101.2 15.8 217 9-231 97-324 (986)
72 1te4_A Conserved protein MTH18 98.4 1.7E-07 5.9E-12 83.4 4.0 119 42-187 11-129 (131)
73 1te4_A Conserved protein MTH18 98.4 7.1E-08 2.4E-12 85.9 1.2 123 79-229 9-131 (131)
74 3tjz_B Coatomer subunit gamma; 98.3 2.6E-06 8.8E-11 90.1 11.4 234 18-267 81-348 (355)
75 4ffb_C Protein STU2; tubulin f 98.2 2E-05 6.8E-10 78.7 14.0 178 14-194 16-216 (278)
76 1xm9_A Plakophilin 1; armadill 98.1 0.0001 3.5E-09 79.0 18.6 135 10-150 8-172 (457)
77 1xm9_A Plakophilin 1; armadill 98.1 0.00015 5E-09 77.8 19.4 258 9-268 91-445 (457)
78 3a6p_A Exportin-5; exportin-5, 98.0 3.8E-05 1.3E-09 92.3 14.5 214 22-240 440-707 (1204)
79 3nmw_A APC variant protein; AR 98.0 5.7E-05 2E-09 79.3 14.2 211 20-234 99-337 (354)
80 3m1i_C Exportin-1; heat repeat 98.0 5.5E-05 1.9E-09 88.9 15.1 185 60-246 430-635 (1049)
81 3nmz_A APC variant protein; pr 97.9 0.00012 4E-09 79.7 15.4 210 21-234 216-453 (458)
82 3ibv_A Exportin-T; karyopherin 97.9 0.00015 5E-09 85.7 16.2 228 21-249 459-748 (980)
83 4ady_A RPN2, 26S proteasome re 97.9 0.00098 3.3E-08 78.4 22.2 198 41-270 474-674 (963)
84 3l6x_A Catenin delta-1; cateni 97.8 0.00083 2.8E-08 75.3 20.2 252 18-270 147-475 (584)
85 4ady_A RPN2, 26S proteasome re 97.8 0.0011 3.9E-08 77.9 21.4 173 39-230 541-718 (963)
86 3tjz_B Coatomer subunit gamma; 97.6 0.0047 1.6E-07 65.3 21.0 234 6-258 24-265 (355)
87 3l6x_A Catenin delta-1; cateni 97.6 0.0012 4.2E-08 73.9 17.4 241 21-270 24-336 (584)
88 3b2a_A TON_1937, putative unch 97.5 0.0087 3E-07 60.3 20.3 218 37-266 31-255 (265)
89 4hat_C Exportin-1; heat repeat 97.5 0.0017 5.7E-08 77.2 17.6 196 75-270 384-616 (1023)
90 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0014 4.7E-08 73.1 13.9 202 6-227 222-432 (800)
91 3opb_A SWI5-dependent HO expre 97.4 0.0046 1.6E-07 71.4 18.6 188 82-270 457-681 (778)
92 2db0_A 253AA long hypothetical 97.2 0.017 5.8E-07 56.7 17.7 183 75-274 25-212 (253)
93 3tt9_A Plakophilin-2; cell adh 97.2 0.0045 1.5E-07 61.6 13.9 166 84-251 10-206 (233)
94 1lrv_A LRV, leucine-rich repea 97.2 9.2E-05 3.1E-09 74.3 1.6 154 51-269 82-243 (244)
95 3opb_A SWI5-dependent HO expre 97.2 0.0069 2.4E-07 69.9 17.2 189 37-231 455-683 (778)
96 2of3_A ZYG-9; multifunctional 97.0 0.059 2E-06 54.8 20.7 190 60-268 32-232 (266)
97 4gmo_A Putative uncharacterize 97.0 0.00092 3.1E-08 75.6 7.4 149 82-231 35-214 (684)
98 1vsy_5 Proteasome activator BL 96.9 0.0033 1.1E-07 74.5 11.7 151 20-175 776-951 (997)
99 3b2a_A TON_1937, putative unch 96.9 0.16 5.5E-06 51.3 21.9 183 81-274 32-220 (265)
100 3o2t_A Symplekin; heat repeat, 96.8 0.22 7.4E-06 53.2 23.7 238 6-249 24-317 (386)
101 3tt9_A Plakophilin-2; cell adh 96.8 0.031 1.1E-06 55.5 16.2 149 41-193 10-182 (233)
102 3l9t_A Putative uncharacterize 96.7 0.026 8.8E-07 56.7 14.6 148 79-240 68-216 (240)
103 3l9t_A Putative uncharacterize 96.7 0.034 1.1E-06 55.9 15.3 174 75-270 30-205 (240)
104 3oc3_A Helicase MOT1, MOT1; re 96.6 0.0076 2.6E-07 67.3 11.0 233 13-271 180-432 (800)
105 3a6p_A Exportin-5; exportin-5, 96.6 0.059 2E-06 64.8 19.0 241 3-248 88-401 (1204)
106 4gmo_A Putative uncharacterize 96.2 0.016 5.5E-07 65.5 10.4 148 39-191 34-214 (684)
107 1lrv_A LRV, leucine-rich repea 95.6 0.0026 8.7E-08 63.8 0.6 129 48-228 103-243 (244)
108 3grl_A General vesicular trans 95.5 0.31 1.1E-05 55.3 17.2 257 9-270 65-392 (651)
109 3gjx_A Exportin-1; transport, 95.4 0.095 3.2E-06 62.7 13.3 155 80-235 475-648 (1073)
110 3gs3_A Symplekin, LD45768P; he 94.9 1.4 4.7E-05 44.5 18.3 159 4-190 12-172 (257)
111 1vsy_4 Proteasome activator BL 94.9 0.8 2.7E-05 53.2 18.6 250 12-276 348-695 (799)
112 1lsh_A Lipovitellin (LV-1N, LV 94.9 0.87 3E-05 54.2 19.3 194 25-240 375-585 (1056)
113 1vsy_5 Proteasome activator BL 93.5 0.42 1.4E-05 56.8 12.7 260 6-270 555-871 (997)
114 1lsh_A Lipovitellin (LV-1N, LV 92.1 4.3 0.00015 48.3 18.8 148 25-188 312-466 (1056)
115 4atg_A TAF6; transcription, TF 91.7 3.1 0.00011 40.4 14.0 158 41-211 9-177 (196)
116 4atg_A TAF6; transcription, TF 89.9 6.5 0.00022 38.2 14.4 131 119-258 10-146 (196)
117 1w9c_A CRM1 protein, exportin 87.2 15 0.0005 38.3 15.8 157 41-198 71-255 (321)
118 3o2t_A Symplekin; heat repeat, 83.1 43 0.0015 35.6 17.4 109 79-190 60-182 (386)
119 3u0r_A Apoptosis inhibitor 5; 82.7 42 0.0014 37.0 17.3 101 17-129 40-143 (507)
120 3grl_A General vesicular trans 80.4 16 0.00054 41.6 13.4 150 80-232 19-196 (651)
121 3dad_A FH1/FH2 domain-containi 73.3 73 0.0025 33.4 15.2 168 75-252 111-305 (339)
122 3vh7_A Envelope glycoprotein G 72.4 6.7 0.00023 31.1 5.4 49 447-495 4-55 (58)
123 3ebb_A Phospholipase A2-activa 66.9 1E+02 0.0034 31.5 14.5 59 56-114 161-223 (304)
124 3gs3_A Symplekin, LD45768P; he 65.8 23 0.00078 35.5 9.2 88 141-231 32-119 (257)
125 1upk_A MO25 protein; transfera 65.5 1.4E+02 0.0047 31.4 16.4 193 52-255 87-313 (341)
126 3fga_B Serine/threonine-protei 63.8 1.6E+02 0.0054 31.5 19.6 114 121-240 248-375 (403)
127 3tj1_A RNA polymerase I-specif 49.6 2.6E+02 0.0087 31.8 15.0 135 31-170 124-262 (649)
128 1vdy_A Hypothetical protein (R 48.9 53 0.0018 30.2 7.8 73 200-272 47-130 (140)
129 1juq_A ADP-ribosylation factor 45.9 1.4E+02 0.0047 27.9 10.4 69 121-190 51-127 (171)
130 1vsy_4 Proteasome activator BL 44.6 2.2E+02 0.0074 33.0 13.8 113 121-234 340-458 (799)
131 1dvp_A HRS, hepatocyte growth 44.4 1.7E+02 0.0057 28.1 11.1 70 122-192 44-116 (220)
132 3ldz_A STAM-1, signal transduc 41.5 2E+02 0.0067 25.8 12.0 69 122-191 44-114 (140)
133 3s4w_B Protein FACD2, fanconi 41.2 5.9E+02 0.02 31.3 20.8 209 38-255 395-612 (1323)
134 1t06_A Hypothetical protein; s 40.1 25 0.00086 34.4 4.5 67 46-112 111-181 (235)
135 1mhq_A ADP-ribosylation factor 39.3 99 0.0034 28.2 8.1 76 100-192 34-117 (148)
136 3g2s_A C-terminal fragment of 39.3 2.3E+02 0.0077 25.9 11.5 69 123-192 51-127 (149)
137 1ho8_A Vacuolar ATP synthase s 38.6 39 0.0013 37.0 6.1 56 94-149 417-475 (480)
138 2b6c_A Hypothetical protein EF 38.5 44 0.0015 32.1 5.9 130 19-160 69-198 (220)
139 3dad_A FH1/FH2 domain-containi 37.8 3.7E+02 0.013 28.0 17.4 144 5-154 116-290 (339)
140 1qbz_A Protein (SIV GP41 ectod 36.7 54 0.0019 29.6 5.7 41 455-495 8-51 (123)
141 3s4w_B Protein FACD2, fanconi 35.4 7.2E+02 0.025 30.6 19.4 144 127-276 406-554 (1323)
142 1x5b_A Signal transducing adap 32.8 1.9E+02 0.0063 26.7 9.0 68 202-272 52-125 (163)
143 2npp_B PP2A, B subunit, serine 32.3 5.1E+02 0.017 27.9 18.5 142 121-276 281-436 (449)
144 3zyq_A Hepatocyte growth facto 32.1 1.3E+02 0.0044 29.2 8.1 70 121-191 46-118 (226)
145 2zfc_A HIV-1 GP41; peptide, vi 30.3 64 0.0022 24.4 4.3 16 478-493 33-48 (49)
146 1x5b_A Signal transducing adap 28.8 3.4E+02 0.012 24.9 11.0 71 121-192 53-126 (163)
147 3gae_A Protein DOA1; UFD3, CDC 24.4 2E+02 0.0068 28.4 8.0 75 55-129 102-188 (253)
148 1pyi_A Protein (pyrimidine pat 24.4 29 0.00099 28.7 1.6 29 479-507 50-78 (96)
149 3p8c_E Probable protein brick1 23.8 1.4E+02 0.0047 24.8 5.5 40 457-496 25-64 (75)
150 3p30_A HIV-1 GP41; HIV, GP41, 23.2 78 0.0027 27.3 4.1 38 454-491 12-52 (96)
151 3jxy_A Alkylpurine DNA glycosy 23.2 4.9E+02 0.017 24.8 16.3 190 5-221 5-218 (232)
152 1dvp_A HRS, hepatocyte growth 23.1 2.6E+02 0.0088 26.7 8.4 68 202-272 42-115 (220)
153 1env_A HIV-1 envelope protein 22.9 1.2E+02 0.004 27.4 5.4 41 454-494 36-79 (123)
154 3jxy_A Alkylpurine DNA glycosy 22.5 54 0.0018 31.8 3.4 133 17-161 73-206 (232)
155 1zme_C Proline utilization tra 22.5 56 0.0019 25.2 2.9 22 479-500 46-67 (70)
156 2jak_A Serine/threonine-protei 21.7 7.3E+02 0.025 26.2 12.6 39 145-183 320-359 (392)
157 2v66_B Nuclear distribution pr 20.6 2.2E+02 0.0077 25.1 6.6 54 446-499 18-71 (111)
158 2oqq_A Transcription factor HY 20.2 64 0.0022 23.9 2.5 21 479-499 5-25 (42)
159 4f52_E Glomulin; cullin-ring E 20.0 8.5E+02 0.029 27.0 12.8 107 80-191 315-431 (596)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=1.2e-20 Score=184.73 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=177.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhcc--
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVGA-- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d-- 115 (604)
+..|-..+.+...+.+|..|++++..|+.+++++ +..+++.++++.+.++| +|+++.||.+++.+++.|+..+..
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444445666666889999999999999999996 66778899999999999 599999999999999999988754
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG 193 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag 193 (604)
.+++. ++++|++.| +++++.++.+|+.||.++++..+ +..+++.|...|++.+.++|..++..|+.++. .+
T Consensus 93 ~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 93 SNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 13333 888888888 78888999999999999999753 57899999999999999999999999999775 44
Q ss_pred -c-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHH
Q 007424 194 -A-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVRE 261 (604)
Q Consensus 194 -~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRd 261 (604)
. .+.+|++.+||.|..+|.+.+|.+|++|+++|+.|+..+| +.|.+|. .-|...|.+||+...+
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l----~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL----ADVDPLKMAKIKECQE 232 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG----TTSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH----HhcCHHHHHHHHHHHH
Confidence 2 3459999999999999999999999999999999999999 5688884 4456677777766554
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.5e-20 Score=186.64 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=174.3
Q ss_pred hhcCCCCCCchhHHHHHHHHH-HHhhh--cc--cccHHHHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhc-c--c-hh
Q 007424 49 LSTNSSDKPGVRKECIHVIAT-LSNSH--NL--SPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVG-A--S-AF 118 (604)
Q Consensus 49 ~e~~ss~kp~~RKaaI~lLGv-Lae~h--~i--~p~L~kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~-d--~-~~ 118 (604)
.+..++.||..|++++..|+. +++++ +. ...+..++..+.+.| +|++..||.+|+.++|+|++.+. . . ++
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 344568899999999999999 99888 44 456678999999999 89999999999999999999986 3 3 44
Q ss_pred HH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc--
Q 007424 119 VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-- 194 (604)
Q Consensus 119 ~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-- 194 (604)
+. ++++|++.+ ++..+.|+..+..||+++++..+.... +|+..++++|+..|++++.++|.+++.+|++++...+
T Consensus 102 ~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 44 888888888 788889999999999999999765332 4599999999999999999999999999999997543
Q ss_pred --CcCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHH
Q 007424 195 --VDGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVM 263 (604)
Q Consensus 195 --~f~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~ 263 (604)
.|.+|+ +.+||.|.+++.+++..+|.+|+++|+.|+.++| +.|.|| +.-|.. -|++.|++..
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~----l~~Ld~---~k~~ki~~~~ 246 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT----LEHLDN---LKRKKIEETV 246 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH----HHHSCH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH----HHHHhH---HHHHHHHHHH
Confidence 256899 9999999999999999999999999999999999 579999 333433 3455555543
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=4.6e-19 Score=202.08 Aligned_cols=248 Identities=16% Similarity=0.173 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
.++.|++.|+.++..++.+.++.+++.|.+...+++|.+|++++.+||.+++++ .+.||++.+++.+++.|+|+++.|
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 378999999999999986668999999998888889999999999999999988 777999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 99 QATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
|.+|++++|.+++++.... +..+++.|+..| .+.++.++..|+.||..+++..++.+.+|++.|++.|.++|+..
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999875422 223667777776 57789999999999999999988888899999999999999877
Q ss_pred chhHHHHHHHHHHHHHh-cCcCcC--CchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhH----H
Q 007424 175 VFKAKAAGLVVVGSVIG-SGAVDG--SGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGK----C 244 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~-ag~~f~--pyf~~lm~~L~e---~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~----~ 244 (604)
..+....++.+|+.++. +|..+. +|++.+||.|.+ .+.+++..+| .++++|+.++..+|+.|.||... |
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~ 574 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRC 574 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 76777778999999996 555553 699999999985 4456677776 79999999999999999988766 5
Q ss_pred HHHHHhc------------cCcc-hhHHHHHHHHHHHHH
Q 007424 245 LKIFESK------------RFDK-VKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~c------------RfDK-vK~VRda~~~AL~~w 270 (604)
++.|+.+ .++. -+.+|..+..+|...
T Consensus 575 ~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l 613 (852)
T 4fdd_A 575 VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL 613 (852)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHH
Confidence 5577665 3321 345777777777655
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.79 E-value=6.1e-18 Score=189.66 Aligned_cols=249 Identities=10% Similarity=0.099 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
.++.|.+.|+.++..++...++.+++.+.+...+.+|..|++++.+||.+++++ .+.+|++.|++.+++.++|+++.
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 677899999999999986668999999998888889999999999999999875 57899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcc----ch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGA----SA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ----DPDAGKLGRMEVRLE 168 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d----~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~----d~i~~yL~~L~~RL~ 168 (604)
||.++++++|++++++.. .+ +..++++|+..| .+. +.++..||.+|..+++..+ +.+.+|++.+++.|+
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 999999999999999753 11 333788888887 444 8899999999999999875 445699999999999
Q ss_pred HHhcCC--chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHHHH
Q 007424 169 RLLKSE--VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS---------------QDWAARKAAAEALWRLA 230 (604)
Q Consensus 169 klL~s~--~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s---------------~Dw~lRkaAaDaLg~LA 230 (604)
++|++. +..+|.+++.+++.++. .+..+.||+..++|.+.+.|.. ....+|..++++|+.++
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999854 36899999999999997 5555669999998888888752 24678999999999999
Q ss_pred HHcCcchhhhhhHHHHHHHhccCcchh-HHHHHHHHHHHHHH
Q 007424 231 VVEKDAVPEFKGKCLKIFESKRFDKVK-VVREVMNKMIEAWK 271 (604)
Q Consensus 231 ~~~ge~f~py~~~~i~~Le~cRfDKvK-~VRda~~~AL~~wK 271 (604)
...|+.+.||...++..|-..=-+.-. .||+.+..++..+-
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~ 626 (861)
T 2bpt_A 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALA 626 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHH
Confidence 999988888876665543322112223 78999888887664
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.75 E-value=6.9e-17 Score=181.50 Aligned_cols=249 Identities=11% Similarity=0.085 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
.++.|+..|..++..++...++.+++.+.+...+++|.+|.+++.+||.+++++ .+.+|++.++|.+++.|+|+++.
T Consensus 344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 778999999999999985558999999988888889999999999999999876 46789999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccc----h-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------------CCChh
Q 007424 98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------------DPDAG 158 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~----~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~--------------d~i~~ 158 (604)
||.+|++++|++++++... + +..+++.|+..| .+ ++.++..|+.||..+++.+. +.+.+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~ 501 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence 9999999999999997531 2 223666666666 34 47899999999999998854 34678
Q ss_pred hHHHHHHHHHHHhcCC---chhHHHH------------------------------------------------------
Q 007424 159 KLGRMEVRLERLLKSE---VFKAKAA------------------------------------------------------ 181 (604)
Q Consensus 159 yL~~L~~RL~klL~s~---~~kaK~a------------------------------------------------------ 181 (604)
|++.+++.|++++... ...++..
T Consensus 502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~ 581 (876)
T 1qgr_A 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ 581 (876)
T ss_dssp THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence 9999999999998754 1233333
Q ss_pred --HHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcc
Q 007424 182 --GLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQD--WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 182 --lLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~D--w~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDK 255 (604)
++.+++.++. .| ..+.||++.+++.|...|.+.. |.+|..|+.+|+.|+...|+.|.||...++..|-.+=-|.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 3444444443 34 4556889899999999887664 6899999999999999999889999888877765554344
Q ss_pred -hhHHHHHHHHHHHHHH
Q 007424 256 -VKVVREVMNKMIEAWK 271 (604)
Q Consensus 256 -vK~VRda~~~AL~~wK 271 (604)
...||.++..+|..+-
T Consensus 662 ~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 6789999888877663
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.73 E-value=5.3e-17 Score=192.02 Aligned_cols=264 Identities=14% Similarity=0.161 Sum_probs=214.1
Q ss_pred HHHHHHhhhcC--ChhHHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH
Q 007424 7 TSVNGLLNKLS--DRDTYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (604)
Q Consensus 7 ~rvl~~L~KLs--DrDT~r~A~~eLD~lA~~----L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L 80 (604)
+.+.+.|.++. |.|.++.|+..|....+. +++.....++..|.+...++++.+|++|+++|+.+++... .+++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHHH
Confidence 45677888884 667899999888775542 3334455666666666667889999999999999998661 1789
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
+.|++.++..|.|++..||.+|+.+++.++..+... ....+++.|+..|.+..+..++.+|..+|..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988532 12338888888883246778999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHH
Q 007424 152 AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRL 229 (604)
Q Consensus 152 a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f~pyf~~lm~~L~e~L~s~-Dw~lRkaAaDaLg~L 229 (604)
.+..+.+|++.+++.|+..|.+++..+|.+++.++++++.. +..+ |+.+|+.|.++|.++ ++.+|..|+++|+.|
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999998863 3333 556777787777644 468999999999999
Q ss_pred HHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 230 AVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 230 A~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+..+|+.|.||...++..|-..=-|.-..||+++.+++..|-..-
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 999999899998888887766655888999999999999987654
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.71 E-value=5.4e-16 Score=173.90 Aligned_cols=259 Identities=13% Similarity=0.137 Sum_probs=208.3
Q ss_pred HhhhcCChh--HHHHHHHHHHHHHhhcC-----CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------cccc
Q 007424 12 LLNKLSDRD--TYSQAAKELDSIAATVD-----PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSP 78 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~eLD~lA~~L~-----pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------~i~p 78 (604)
.+..|.|.+ -+..|+..|-.++..++ ...++.+++.|.+...+. +.+|.++..+|+.+++.+ .+.|
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 344455554 45667778888887763 334777777777766554 889999999999998763 5789
Q ss_pred cHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccc--h-hHHHHHHHHHHHcc--------------CCChhHHH
Q 007424 79 YITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGAS--A-FVTMLKLLSDALFT--------------EQDTNAQV 139 (604)
Q Consensus 79 ~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~--~-~~sllkPL~eaL~~--------------eqdk~vQ~ 139 (604)
|++.|++.+++.|.+ ++..||.+++++++.++....+. + +..+++++++.|.. +....++.
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 999999999999985 44789999999999999987542 2 22377788877742 11345778
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF-KAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~-kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
.++.||..+++..+..+.+|++.+++.+..+|++.+. .++..++.+++.++. .|..|.||++.++|.|..+|.++++.
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 9999999999999888889999999999999998876 889999999999996 56678899999999999999989999
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcch--hHHHHHHHHHHHHHH
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKV--KVVREVMNKMIEAWK 271 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKv--K~VRda~~~AL~~wK 271 (604)
+|..|+.+|+.|+...|+.|.||...++..|-.+--|.- ..||.++..++..+-
T Consensus 655 vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 999999999999999999999999888877654432322 679999888887653
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=3.8e-16 Score=167.11 Aligned_cols=258 Identities=15% Similarity=0.118 Sum_probs=185.3
Q ss_pred HHHHHhhhc-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccc--cc
Q 007424 8 SVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS--PY 79 (604)
Q Consensus 8 rvl~~L~KL-sDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~--p~ 79 (604)
.++..|.++ .|.+ .++.|++.|..++..++++. .+.+++.+.....++++.+|++++.+||.++... ... ++
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 344444443 3443 56777777777777665432 1223333333333456677888888887777655 111 56
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
++.++|.+.+.++|+++.||.+++++++.++..+.+......+.|++..++.+.++.++..|+.+|..+++..+. ..+
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~ 399 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL 399 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHH
Confidence 778888888888888888888888888888777643222234455555555778889999999999999987643 235
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
.+.++|.|.+++++++..++.+++.+++.++. .|..+ +.+.++|.+...|.+++|.+|.+|+.+|+.++...|+.+
T Consensus 400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~- 476 (588)
T 1b3u_A 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW- 476 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh-
Confidence 67899999999999999999999999999986 45443 335689999999999999999999999999999888532
Q ss_pred hhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 239 EFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 239 py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+...++..|..+-.|.-..||.++..++..+-
T Consensus 477 -~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 477 -AHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp -HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34566777777777888899999999888764
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.68 E-value=8.6e-16 Score=181.71 Aligned_cols=257 Identities=14% Similarity=0.184 Sum_probs=210.6
Q ss_pred hhhcCChh--HHHHHHHHHHHHHhhcCCC---------ChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--cccc
Q 007424 13 LNKLSDRD--TYSQAAKELDSIAATVDPT---------LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSP 78 (604)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~lA~~L~pe---------~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~i~p 78 (604)
+..|.|.+ .+..|+..|..++..++++ ..+.+++.|.+... ++++.+|.+++.+|+.+++.. .+.|
T Consensus 92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~ 171 (1230)
T 1u6g_C 92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 171 (1230)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH
Confidence 33344444 5678899999999999876 25566666655544 567899999999999999866 7889
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
|++.+++.+...|.|+++.||.+++.+++.++....+.-+..+++.|+..|..+.+..+...|+.|+..+++..+....+
T Consensus 172 ~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 172 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999987543334478888888865544456678899999999998877789
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC------------------------
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS------------------------ 213 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s------------------------ 213 (604)
|++.+++-+++.+.+++..+|.+++.+++.++. .+..+.||++.++|.+..++..
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~ 331 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD 331 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence 999999999999998888899999999999997 4566779999999999887741
Q ss_pred -------------CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 214 -------------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 214 -------------~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
..|.+|++|+++|+.++...++.|.+|...++..|-.+=.|....||.++.++|..
T Consensus 332 ~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 332 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred hhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 13889999999999999988888999999999998877669999999988888753
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.67 E-value=2.3e-15 Score=171.67 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 21 TYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
.+..|++.|..++...+. ..++.++..|.....++++.+|+.++.+|+.+++.+ ++.||++.+++.+.+.++|++
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence 556677777666554332 225677777777777778899999999999999988 889999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhhc--c--chhH-HHHHHHHHHHc----------cC-----------CChhHHHHHHHHHHHHH
Q 007424 96 SALQATCISTVSSLSPRVG--A--SAFV-TMLKLLSDALF----------TE-----------QDTNAQVGAALCLAATI 149 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~--d--~~~~-sllkPL~eaL~----------~e-----------qdk~vQ~~AA~cLaalI 149 (604)
..||..|++.+..+++... + .+.. .+++.|+..|. ++ .+..+..+|+.||+.+.
T Consensus 270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 9999999999999987521 1 2222 25666665551 22 23457889999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
+..++ ..++.+++.+.++|.+++.++|.+++.++|+++... ..+.||++.+++.|...|.++++.+|.+|+.+|+.
T Consensus 350 ~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 350 NVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 98764 567889999999999999999999999999988633 44459999999999999999999999999999999
Q ss_pred HHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 229 LAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 229 LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
++...+ +...+|...++..|-.+=-|..+.||+++..||..+-+
T Consensus 427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999765 45566666666666655558889999999999987754
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=1.3e-15 Score=163.07 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhhc-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 4 ALKTSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KL-sDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
..+..++..|.++ .|.| .++.|++.|..++..++++. ++.+++.|.....++++.+|+.++.+|+.++...--..+
T Consensus 160 ~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 239 (588)
T 1b3u_A 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239 (588)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3455566666555 3444 68899999999999887643 344455554444566789999999999999876511235
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA- 157 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~- 157 (604)
.+.++|.+.+.+.|++..||.+++.++|.++..+....+.. +++.++..| .+.++.++.+|+.+|..+++..+....
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 67788999999999999999999999999998763222222 555555555 788899999999999999998876543
Q ss_pred -hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 158 -GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 158 -~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
.+++.++|.+.+++++++..+|.+++.+++.++. .|... +.+.++|.+..+|.++++.+|.+|+.+|+.+....|
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 396 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH
Confidence 5788899999999999999999999888888775 34321 234577888888888889999999999998888776
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+.+ ...++..|..+-.|+--.||.++.++|..+-.
T Consensus 397 ~~~---~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 397 RQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 222 22333444344447778889888888887743
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.62 E-value=7e-14 Score=157.12 Aligned_cols=254 Identities=10% Similarity=0.089 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhhcC----CCChHHHHHhhhhcCCCCC--CchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 22 YSQAAKELDSIAATVD----PTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~----pe~ip~fL~~L~e~~ss~k--p~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
...++..|..++..++ ...++.+++.|.....+.. +.+|..++.+++.++... .+.||++.+++.+++.|.|
T Consensus 581 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 4567788888988777 2235556666655544442 578999999999998866 6789999999999999999
Q ss_pred C-ChhHHHHHHHHHHhhhhhhcc--ch-hHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 007424 94 K-NSALQATCISTVSSLSPRVGA--SA-FVTMLKLLSDALFT-EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 94 p-Ds~VR~Ac~~aLg~LAe~l~d--~~-~~sllkPL~eaL~~-eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
+ +..||.+++.++|.|+..+.. .+ ...+++.|+..|.. +.+..++..++.|+..++...++...+|++.+++.|.
T Consensus 661 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~ 740 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740 (876)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8 789999999999999987753 12 22367777777743 2456788999999999999888777889999999999
Q ss_pred HHhcCCc-----------hhHHHHHHHHHHHHHhc-C----------cCcCCchHHHHHHHHhhhcCC--cHHHHHHHHH
Q 007424 169 RLLKSEV-----------FKAKAAGLVVVGSVIGS-G----------AVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAE 224 (604)
Q Consensus 169 klL~s~~-----------~kaK~alLsaIGSiA~a-g----------~~f~pyf~~lm~~L~e~L~s~--Dw~lRkaAaD 224 (604)
+.++.+. ..+|..++.+++.++.. + ..+.||++.+++.|...+.++ +..+|++|+.
T Consensus 741 ~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~ 820 (876)
T 1qgr_A 741 QASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAG 820 (876)
T ss_dssp HHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHH
T ss_pred HHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9997552 26788888888887753 3 234589988888887776666 6799999999
Q ss_pred HHHHHHHHcCc-chhhh-hhHHHHHHHh-ccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 225 ALWRLAVVEKD-AVPEF-KGKCLKIFES-KRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 225 aLg~LA~~~ge-~f~py-~~~~i~~Le~-cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
+||.|+...|. .+.+| ...++..|=. +.-|+-..||.+|..|++.++++..
T Consensus 821 ~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 821 LIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence 99999999987 88888 5565654444 7678889999999999999988763
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.5e-14 Score=149.98 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=195.0
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCC-ChHHHHHhhhhcCCCC--CCchhHHHHHHHHHHHhhh---ccc
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPT-LLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH---NLS 77 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe-~ip~fL~~L~e~~ss~--kp~~RKaaI~lLGvLae~h---~i~ 77 (604)
.+|+.++..|.. .+... +.+...|-.||...-|+ ..|-+++.|.+...++ ++.+|..++.+|+.+++.. .+.
T Consensus 90 ~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 90 EVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 466666666644 23335 77888888888875332 4444444444444445 6789999999999999854 678
Q ss_pred ccHHHHHHHHHhhccCC--ChhHHHHHHHHHHhhhhhhccc----hhHHH-HHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 78 PYITKIINSITRNFRDK--NSALQATCISTVSSLSPRVGAS----AFVTM-LKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDp--Ds~VR~Ac~~aLg~LAe~l~d~----~~~sl-lkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+|++.|++.+.+.|+|+ ++.||.+++++++.+.+++.+. .+..+ ++.|.. +..+.+..+...++.||..+++
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 6899999999999987665321 12233 444444 4467788899999999999999
Q ss_pred hcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC------------------cC---c-CCchHHHHHHH
Q 007424 151 AAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG------------------AV---D-GSGLKGLVSCL 207 (604)
Q Consensus 151 ~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag------------------~~---f-~pyf~~lm~~L 207 (604)
..++...+|++ .+++-++..+++.+..++..++..++.++... .. + .+|+..++|.|
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 88776778888 89999999998888888988998888877531 01 1 24667888988
Q ss_pred HhhhcC-------CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 208 LGFLSS-------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 208 ~e~L~s-------~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+.|.+ ++|.+|.+|+++|+.++...|+.+.+ .++..+..+=-|.--.||+++..+|..+-
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 888853 46999999999999999998853332 23444443334788899999999998774
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.60 E-value=1.3e-14 Score=168.43 Aligned_cols=246 Identities=9% Similarity=0.101 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC------CCCCchhHHHHHHHHHHHhhh-----cccc-----cHHHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS------SDKPGVRKECIHVIATLSNSH-----NLSP-----YITKII 84 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s------s~kp~~RKaaI~lLGvLae~h-----~i~p-----~L~kIl 84 (604)
.+++|.+.|+.++..++...+++++..+.+... +.+|..|.+|+++||.++++. .+.+ .+..++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 677888899999999984337888888765544 678899999999999998742 1222 566653
Q ss_pred -HHHHhhccCC---ChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-------
Q 007424 85 -NSITRNFRDK---NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ------- 153 (604)
Q Consensus 85 -~~IvrrLkDp---Ds~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~------- 153 (604)
..|+..|+|+ .+.||.+|++++|++++++...-...+++.|+..| .+.++.|+..||+||..+++...
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 4678888998 88999999999999999973211122555555555 46678899999999999998532
Q ss_pred ----CCChhhHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc-----CCcHHH
Q 007424 154 ----DPDAGKLGRMEVRLERLLKSEV-----FKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS-----SQDWAA 218 (604)
Q Consensus 154 ----d~i~~yL~~L~~RL~klL~s~~-----~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~-----s~Dw~l 218 (604)
+.+.+|++.|+++|+++|+..+ ......++.+|++++. .++.+.||+..+|+.|...|. .++...
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 3357999999999999998751 2234689999999996 567788999999999998884 357888
Q ss_pred HHHHHHHHHHHHHHcC-cchhhhhhHHHHH----HHhccCcchhHHHHHHHHHHHHHH
Q 007424 219 RKAAAEALWRLAVVEK-DAVPEFKGKCLKI----FESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 219 RkaAaDaLg~LA~~~g-e~f~py~~~~i~~----Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+..++++|+.|+...+ +.+.+|...++.+ |+.+-.| +++.+.+.+..+-
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~----~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE----FIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT----THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh----hHHHHHHHHHHHH
Confidence 8889999999999865 6777777666654 4443333 4444455544443
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=2.6e-13 Score=140.74 Aligned_cols=228 Identities=11% Similarity=0.151 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHhhc----CCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHHHHHhh
Q 007424 19 RDTYSQAAKELDSIAATV----DPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRN 90 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L----~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~~Ivrr 90 (604)
.+-+..|++.|-.++..+ +...+ ..++..|.+...++++.+|+.++.+|+.+++.+ .+.+|++ .+++.++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776654322 22222 335777777777788899999999999999988 7889999 999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhc-----------------c--chh-----HHHHHHHHHHHcc------CCChhHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVG-----------------A--SAF-----VTMLKLLSDALFT------EQDTNAQVG 140 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~-----------------d--~~~-----~sllkPL~eaL~~------eqdk~vQ~~ 140 (604)
++|.+..||..|++.++.+++... . ..+ ..+++.|+..|.. +.+..+..+
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 999999999999999999988641 0 001 2255555555532 224578899
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHhhhcCCcHHH
Q 007424 141 AALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 141 AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
|+.||..+++..++ ..++.+++.+...|++++.++|.+++.++|+++... ..+.++++.++|.|...|.++++.+
T Consensus 348 a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 348 AGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99999999999874 678889999999999999999999999999988522 2345889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcch--hhhhhHHHHHHH
Q 007424 219 RKAAAEALWRLAVVEKDAV--PEFKGKCLKIFE 249 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ge~f--~py~~~~i~~Le 249 (604)
|.+|+.+|+.++...++.+ .+|...++..|-
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 9999999999999887544 578777777664
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.53 E-value=1.1e-13 Score=159.90 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhcc-
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR- 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss-----~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLk- 92 (604)
.++.+.+.|+.++..++.+.++.++..|.+...+ .+|..|++++.+||.+++++ ...++|++|++ ++-.|.
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc
Confidence 3456677788888877744478888887766543 68999999999999999998 66799999999 555555
Q ss_pred -CCChhHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 93 -DKNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 93 -DpDs~VR~Ac~~aLg~LAe~l~d~~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
|+.+.||.++++++|++++++.+.+ ...+++-|+..| + +.++..||.|+..+++.....+.+|++.|+..+.+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6799999999999999999996533 112445555555 2 77999999999999999887788999999999999
Q ss_pred HhcCC--chhHHHHHHHHHHHHHhc-C-cCcCCchHHHHHHHHhhhc----CC--cHHHHHHHHHHHHHHHHH---cC--
Q 007424 170 LLKSE--VFKAKAAGLVVVGSVIGS-G-AVDGSGLKGLVSCLLGFLS----SQ--DWAARKAAAEALWRLAVV---EK-- 234 (604)
Q Consensus 170 lL~s~--~~kaK~alLsaIGSiA~a-g-~~f~pyf~~lm~~L~e~L~----s~--Dw~lRkaAaDaLg~LA~~---~g-- 234 (604)
+++.+ +...+..++++||.++.+ + ....||+..+++.+.+.|. .. +-..+..++++|+.|+.+ ++
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 99985 567899999999999974 3 3445888887777766553 22 333566666666666653 32
Q ss_pred -----------cchhhhhhHHHHHHHhc--cCcchhHHHHHHHHHHHH
Q 007424 235 -----------DAVPEFKGKCLKIFESK--RFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 235 -----------e~f~py~~~~i~~Le~c--RfDKvK~VRda~~~AL~~ 269 (604)
+.+.+|...++.++... .+.+-..|.+.+..++..
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 24666776676655543 244445777777766665
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.51 E-value=3.2e-13 Score=155.42 Aligned_cols=243 Identities=13% Similarity=0.055 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcC----CCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTN----SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~----ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
++.+.+.|+.++..++.+.++.++..+.+.. .+.+|..|.+++.+||.++++. ...++|+.|++.+ -.|.++.
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCc
Confidence 4566677888887777555788888776655 6678999999999999999998 6678999999955 4677778
Q ss_pred hhHHHHHHHHHHhhhhhhccchhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcC
Q 007424 96 SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s 173 (604)
+.||.++++++|++++++.+.+.. .+++-|+..| + ++.++..||.||..+++.....+.+|++.|+..|.+++..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-G--NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-T--CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 899999999999999998643311 1444555555 2 3789999999999999998888889999999999999986
Q ss_pred C--chhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcC-----CcH---HHHHHHHHHHHHHHHHcCcc-----
Q 007424 174 E--VFKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSS-----QDW---AARKAAAEALWRLAVVEKDA----- 236 (604)
Q Consensus 174 ~--~~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s-----~Dw---~lRkaAaDaLg~LA~~~ge~----- 236 (604)
+ ....+..++.+||.++. ++ ..+.||+..+|+.+.+.|.. .+- ..+..++++|+.++..++..
T Consensus 580 ~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 4 56789999999999997 44 45679999999988887741 233 34457788888888877631
Q ss_pred -----------------hhhhhhHHHHH----HHhccCcchhHHHHHHHHHHHHH
Q 007424 237 -----------------VPEFKGKCLKI----FESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 237 -----------------f~py~~~~i~~----Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.++...++++ |+..- .-..|++.+..++..+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~v~e~~~~~l~~~ 712 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL--NDAQVVEAVCAIFEKS 712 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHH
Confidence 34444555544 44322 2237788777777665
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.42 E-value=2.7e-12 Score=121.71 Aligned_cols=189 Identities=20% Similarity=0.298 Sum_probs=145.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+++.++.++..|. ++++.+|..++.+||.+.. +..++.+++.|.|+++.||.+++++||.+...
T Consensus 17 ~~~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 80 (211)
T ss_dssp CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----
T ss_pred CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 5556888888875 4578999999999998754 35567788899999999999999999999754
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..+++|+..| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++.+++.++|.+ +.
T Consensus 81 ---~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-- 141 (211)
T 3ltm_A 81 ---RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI---GD-- 141 (211)
T ss_dssp ---GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC--
T ss_pred ---HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC--
Confidence 3577777777 77889999999999987743 23456778899999999999999888865 22
Q ss_pred CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+..++.|.++|.++++.+|..|+.+|+.+.. + .....+.+.|+ |.-..||.++.+||..++.-+
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---RVRAAMEKLAE----TGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---HHHHHHHHHHH----HCCHHHHHHHHHHHHC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCC
Confidence 2467888899999999999999999999843 1 12223344444 888999999999988775433
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=8.6e-12 Score=121.81 Aligned_cols=191 Identities=10% Similarity=0.076 Sum_probs=160.2
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+.+|-+.+.+.+.|.+..+|.+++.+|..+.+...+ ..+..++.-|...|..+.+..+..+|+.||..++..++...
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 444556788899999999999999999999886322 22334666666666237888999999999999999988777
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-c
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D 235 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e 235 (604)
.+|+..++|.|++.|.+++..++.++..++..++... .++.+++.|...|.+.+|.+|..++..|+.++...+ +
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999887532 367899999999999999999999999999887765 3
Q ss_pred -chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 236 -AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 236 -~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
.+.+|...++..|-.|=-|..+.||+++.++|..+-..-+
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 6778888888888888889999999999999988755443
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=8.9e-12 Score=117.26 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=141.2
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM 121 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl 121 (604)
+.....+.+...++++.+|..++.+||.+.. +..++.+++.|.|+++.||.+++++|+.+... ..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------~~ 77 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------RA 77 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------HH
Confidence 3334444444557788999999999998764 24467778889999999999999999998654 35
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK 201 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~ 201 (604)
+++|...| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++.+++.++|.+. . +
T Consensus 78 ~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~------~ 137 (201)
T 3ltj_A 78 VEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---D------E 137 (201)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C------G
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C------H
Confidence 77777777 67888999999999987643 234566778889999999999888888652 1 2
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..++.|.++|.++++.+|..|+.+|+.+.. +. ....+.+.|+ |.-..||.++.+||..++.
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999832 11 2223344454 7789999999999887653
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.36 E-value=1.6e-11 Score=127.47 Aligned_cols=249 Identities=11% Similarity=0.127 Sum_probs=182.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC--------ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATVDPT--------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINS 86 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe--------~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~ 86 (604)
+.+.++.|+..|-.|+..-.+. .+|.++..+. +.++.+|..++.+|+.++... .....+ ..+++.
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 4557888999999998765221 2566665554 556789999999999998754 111111 347788
Q ss_pred HHhhccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-H
Q 007424 87 ITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-G 161 (604)
Q Consensus 87 IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~ 161 (604)
+++.|++++..||.+|+++|+.|+....+.. .. .++++|+..| .+.++.++..|+.||..+..+..+.....+ .
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 8899999999999999999999997643211 11 2777777777 567889999999999999874322222223 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc---
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--- 235 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--- 235 (604)
.+++.|+.+|++++..+|..++.+|+.++..+. ....++ ..+++.|.+.|.+.++.+|..|+++|+.|+.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 397 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Confidence 578889999999999999999999998886431 212222 24789999999999999999999999999985432
Q ss_pred ----chhhhhhHH-----HHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 236 ----AVPEFKGKC-----LKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 236 ----~f~py~~~~-----i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+.+|...+ ++.|+....+.-..||+.+..+|..+=
T Consensus 398 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 398 RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 234565554 566777778888899999999998764
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.36 E-value=1.6e-11 Score=132.53 Aligned_cols=249 Identities=14% Similarity=0.146 Sum_probs=184.9
Q ss_pred CChhHHHHHHHHHHHHHhhc-CCC-------ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV-DPT-------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L-~pe-------~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~ 85 (604)
.|.+..+.|+..|-.|+..- +.. .+|.|+..| .+.++.+|..++.+|+.|+... .+...+. .+++
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI----YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT----TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 45667888999999998765 221 245555555 4556899999999999998764 2222222 6788
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.++..|.+++..||.+|+++|+.|+..-... .+. .++++|+..| .+.++.++..|+.||..+.....+....++
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999998653221 111 2778888877 566888999999999999875332222222
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge 235 (604)
..+++.|+.+|.++++.++..++.+|+.++..+.. ...++-. +++.|...|.+.+..+|..|+++|..|......
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 24788899999989999999999999998875432 2233322 789999999999999999999999999885431
Q ss_pred -------chhhhhh-----HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 236 -------AVPEFKG-----KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 236 -------~f~py~~-----~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+.+|.. .+++.|+....|.-..|++.+..+|..+
T Consensus 462 ~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 462 DKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2234432 3578899999999999999999998765
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.35 E-value=2.9e-11 Score=125.43 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=180.7
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L--------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~ 85 (604)
.|.+.+..|+..|-.|+..- ....++.|+.++.+ +.++.+|+.++.+|+.++... .-...+..++|
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 195 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 35567888999998888753 23458888888863 346789999999999999653 22334578889
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hh--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AF--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|+++|..||..++++|+.|+....+. .+ ..++++|+..| .+.++.++..|+.||..+....++.....+
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 9999999999999999999999999864221 11 12788888887 577888999999999999875322111112
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f 237 (604)
..+++.|.++|++++..++..++.+|+.++...... ...+ ..++|.|.+.|.+++..+|+.|+.+|+.|+.... +.+
T Consensus 275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 148899999999999999999999999877421111 1122 2578888888888999999999999999987532 322
Q ss_pred hhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 238 PEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 238 ~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..+. ..++..|-..=-|+-..||..+..||..+-.
T Consensus 355 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2221 1233333322226678899999999986643
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.34 E-value=1.9e-11 Score=131.54 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=185.3
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH-HHHHHHHHhh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN 90 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L-~kIl~~Ivrr 90 (604)
.|.+..+.|+..|-.|+..-+... +..+++.|.....+.++.++..++.+|+.++.+. .+...+ ..+++.+++.
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 355678888899988888754322 1223334444445667899999999999998765 211111 2478899999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccch--h--HHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCChhhH-HHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASA--F--VTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKL-GRME 164 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~--~--~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~ 164 (604)
|.++++.|+..|+.+|+.|+....... . ..++++|+..|. +. ++.++..|+.+|..+.....+.....+ ..++
T Consensus 295 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 999999999999999999997542211 1 126888888884 55 889999999999999874222111112 2478
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc------
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD------ 235 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge------ 235 (604)
|.|+++|.+.+..++..++.+|+.++..+ .....|+ ..+++.|.+.|.+.|+.+|..|+++|+.|......
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 89999999999999999999999998764 3333444 34789999999999999999999999999875532
Q ss_pred -chhhhh-----hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 236 -AVPEFK-----GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 236 -~f~py~-----~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...+|. ...++.|+....+.-..|++.+...|+.+
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 122232 23477888888889999999999999866
No 25
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.33 E-value=3.3e-11 Score=119.08 Aligned_cols=215 Identities=12% Similarity=0.083 Sum_probs=154.5
Q ss_pred hcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHH-hhc
Q 007424 15 KLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSIT-RNF 91 (604)
Q Consensus 15 KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Iv-rrL 91 (604)
-|.|.| .+..|+..|-.+. +++.++.++.++. ++++.+|..++.+||.+.... ..++.+++.+. ..+
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~---~~~~~l~~~L~~~~~ 100 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICK---KCEDNVFNILNNMAL 100 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCT---TTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHc----CCCHHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHh
Confidence 344444 5667777776664 3444788777765 456789999999998875322 34566777777 367
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
+|+++.||.+++++||.+...... ....++++|...| .+.++.++..|+.+|..+.+ +..++.|.++|
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l 168 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLL 168 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHH
Confidence 899999999999999999854310 0113677777777 67888999999999876643 12566778889
Q ss_pred cCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 172 KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 172 ~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
++++..++..++.++|.+ +. .-+.+++.|...|.++++.+|..|+.+|+.+.. .+.+ ...++.|+.
T Consensus 169 ~d~~~~vr~~a~~aL~~~---~~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--~~~~----~~L~~~l~d- 234 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININ---KY----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--KRVL----SVLCDELKK- 234 (280)
T ss_dssp TCSSHHHHHHHHHHHHHH---TC----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--GGGH----HHHHHHHTS-
T ss_pred cCCCHHHHHHHHHHHHhh---cc----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--HhhH----HHHHHHhcC-
Confidence 999999999988888865 21 124678889999999999999999999998762 1222 334666653
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
..||..+.+||..+
T Consensus 235 -----~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 235 -----NTVYDDIIEAAGEL 248 (280)
T ss_dssp -----SSCCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHhc
Confidence 23898888888766
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.32 E-value=7e-11 Score=118.07 Aligned_cols=198 Identities=8% Similarity=0.036 Sum_probs=164.7
Q ss_pred ccccHHHHHHHHHhhccCCChhHHHHHHHHHHh-hhhhhcc-----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 76 LSPYITKIINSITRNFRDKNSALQATCISTVSS-LSPRVGA-----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 76 i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~-LAe~l~d-----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
|.+.||+ -....|.+++..-|.+++.+|+. +.+...+ ..+..++.-|...|-.+.+..+...|+.||..+.
T Consensus 13 i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 13 ILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp CGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3445554 55677899999999999999999 8764322 2334477777777745888889999999999999
Q ss_pred hhcC-CCCh-hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHHHHHHHhhhcCCcHHHHHHHHHH
Q 007424 150 DAAQ-DPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGLVSCLLGFLSSQDWAARKAAAEA 225 (604)
Q Consensus 150 E~a~-d~i~-~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDa 225 (604)
+++. +... +|...++|.++..|++....++.++..|+-+++. ...... +|++.+|+.|.++|.+..|++|..++.+
T Consensus 90 ~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 90 DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 9998 7887 9999999999999999888898888888888886 433333 5699999999999999999999999999
Q ss_pred HHHHHHHcC---cchhhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 226 LWRLAVVEK---DAVPEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 226 Lg~LA~~~g---e~f~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
|+.++...+ +.|.+|. ..++..|..|=-|.-+.||+++.++|..+-.+-|.
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999999887 4577887 88888888888899999999999999998766554
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.32 E-value=3.3e-11 Score=130.04 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=182.0
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~ 85 (604)
.|.+.+..|+..|-.|+.. +....+++|+.+|.+ .++.+|+.++.+|+.|+... .-......+++
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 4666788888888888864 234458888888875 46789999999999999764 23345677899
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|.++|..||..++++|+.|+....+ ..+. .+++.|+..| .+.++.++..|+.+|..++...+......+
T Consensus 261 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999975322 1111 2677777777 567888999999999988864322111122
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc--c
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--A 236 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--~ 236 (604)
..+++.|+.+|.+++..++..++.+|+.++....... .++ ..+++.|...|.+.++.+|..|+.+|+.|+..... .
T Consensus 340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 419 (530)
T 1wa5_B 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419 (530)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHH
Confidence 2488899999999999999999999998775322111 122 24678888888889999999999999999986432 1
Q ss_pred hhhh--hhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 237 VPEF--KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 237 f~py--~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...+ ...++..|-..=-++...||..+..||..+=.
T Consensus 420 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 420 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 1111 12344444444447788999999999987643
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.30 E-value=6.6e-11 Score=116.89 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=149.8
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
....++.++.+|. ++++.+|..++.+||.+.. +..++.+++.|+|+++.||.+|+++||.+...- .
T Consensus 21 ~~~~i~~L~~~L~----~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~ 86 (280)
T 1oyz_A 21 KKLNDDELFRLLD----DHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K 86 (280)
T ss_dssp HTSCHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T
T ss_pred HHhhHHHHHHHHH----cCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c
Confidence 3445888888875 4577999999999998863 567888899999999999999999999987431 1
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
....+++.|...+..+.++.++..|+.+|..+....+ .+.+.+++.|.++|++++..++.+++.++|.+ +.
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~---~~-- 157 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI---ND-- 157 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc---CC--
Confidence 1222444444445578899999999999999886432 34567889999999999999998888888743 22
Q ss_pred CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+..++.|.+.|.++++.+|..|+.+|+.+.... .......++.|+ |.-..||..+..+|..+.
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDN----SDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----HHHHHHHHHHTT----CSCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----HHHHHHHHHHhc----CCCHHHHHHHHHHHHHhC
Confidence 135788888899999999999999999874211 112223344554 888999999999987663
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.30 E-value=7.6e-11 Score=112.45 Aligned_cols=218 Identities=18% Similarity=0.192 Sum_probs=159.1
Q ss_pred CChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~--------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~ 85 (604)
.|.+.+..|+..|..++..-+ ...++.++.+|. ++++.+|..++.+|+.++... ....++ ...++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 456678888888888876533 223677777775 345789999999999998764 211222 24688
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|++++..||..|+++|+.|+..-.+. .+. ..+++|+..| .+.++.++..|+.||..+....++. ...+
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~ 167 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEA-IKAIV 167 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHH-HHHHH
Confidence 9999999999999999999999999643221 111 2788888877 5778889999999999998753211 1222
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
..+++.|..+|.+++..++..++.+++.++........++ ..+++.|.+.+.+++..+|..|+.+|+.|+...+..+
T Consensus 168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccc
Confidence 2388899999999999999999999998875222111111 2368999999999999999999999999999776444
Q ss_pred hhh
Q 007424 238 PEF 240 (604)
Q Consensus 238 ~py 240 (604)
.+|
T Consensus 248 ~~~ 250 (252)
T 4hxt_A 248 HHH 250 (252)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 30
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=7.4e-11 Score=110.92 Aligned_cols=181 Identities=16% Similarity=0.211 Sum_probs=140.0
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHH
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~ 86 (604)
..+++.|.- .|.+.+..|+..|-.+. +++.++.++.+|. ++++.+|..++.+||.+.. +..++.
T Consensus 17 ~~~i~~L~~-~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~--------~~~~~~ 80 (201)
T 3ltj_A 17 EMYIKNLQD-DSYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEP 80 (201)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHH
Confidence 344444432 34446777777766543 3455888888775 4578999999999998853 245677
Q ss_pred HHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 87 IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
+++.|.|+++.||.+|+++|+.+... ..++.|...| .+.++.++..|+.+|..+.+ +..++.
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~ 142 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEP 142 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHH
Confidence 78889999999999999999998764 3567777776 67889999999999988743 245667
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
|.++|++++..++.+++.++|.+ +. +..++.|.+++.++++.+|.+|+++|+.|.
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~---~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH---CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh---Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999865 22 467888999999999999999999999864
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.23 E-value=4.1e-10 Score=121.08 Aligned_cols=247 Identities=11% Similarity=0.105 Sum_probs=179.7
Q ss_pred CChhHHHHHHHHHHHHHhhcC-C--------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHH
Q 007424 17 SDRDTYSQAAKELDSIAATVD-P--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~-p--------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl 84 (604)
+|.+.+..|+..|..++..-+ + ..+|.|+.+|... +.+.+|.+++.+|+.++.+. .....+. ..+
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 456678889999988866443 1 2378888888632 23789999999999999864 1111111 488
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
+.+++.|++++..||..|+++|+.|+...... .+. ..+++|+..|..+.++.++..|+.||..++...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999998653211 111 27889998885567888999999999999987655555667
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
..+++.|.++|.+++..++..++.+++.++....... ..+ ..+++.|...|.+.++.+|..|+.+|+.|+....+...
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999998898888888887764321111 111 13688899999999999999999999999873222111
Q ss_pred h-----hhhHHHHHHHhccCcc-hhHHHHHHHHHHHHH
Q 007424 239 E-----FKGKCLKIFESKRFDK-VKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p-----y~~~~i~~Le~cRfDK-vK~VRda~~~AL~~w 270 (604)
. ....++..|. +. -..||..+..+|.-+
T Consensus 323 ~~~~~~~l~~L~~lL~----~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLT----QNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHTTTHHHHHHHHHH----SCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHc----CCCcHHHHHHHHHHHHHH
Confidence 1 1244456665 33 567888877777765
No 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=2.3e-10 Score=108.37 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|.+.+..|+..|-.+. +++.++.|+.+|. ++++.+|..++.+||.+.. +..++.+++.|+|+++.
T Consensus 32 ~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGW 96 (211)
T ss_dssp SHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHH
T ss_pred CHHHHHHHHHHHHHhC---CccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHH
Confidence 4446666666665543 3556888888776 3578999999999998864 34567778889999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
||.+++++|+.+... ..++.|+..| .+.++.++..|+.+|..+.+ +..++.|.++|++++..
T Consensus 97 vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~ 158 (211)
T 3ltm_A 97 VRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGW 158 (211)
T ss_dssp HHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCcH-------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHH
Confidence 999999999999764 3567777766 78899999999999988743 23566778889999999
Q ss_pred HHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 178 aK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
++.+++.+++.+ +. +..++.|.+++.++++.+|..|+++|+.+....
T Consensus 159 vr~~a~~aL~~~---~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 159 VRQSAADALGEI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHH---CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHh---Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 999988888855 22 467888999999999999999999999887643
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.21 E-value=4.5e-10 Score=107.09 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=162.9
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
|+.|+.+|. ++++..|..++.+|+.++... .....+ ..+++.+++.|++++..||..|+++|+.|+..-.+..
T Consensus 4 i~~L~~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLT----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 677777775 345789999999999998765 111222 2478999999999999999999999999997632211
Q ss_pred --hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 118 --FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 118 --~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
+. ..+++|+..| .+.++.++..|+.+|..+....++.....+ ...++.|+++|++++..++..++.+++.++..
T Consensus 80 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 2788888887 567889999999999999863221111111 23788999999999999999999999987753
Q ss_pred CcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 193 GAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 193 g~~f~py--f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
....... -..+++.|.++|.++++.+|..|+.+|+.|+....+....+ ...++..|-..=-+.-..||+.+..+|.-
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 2211111 12478999999999999999999999999986322222111 12233333333236667999999999988
Q ss_pred HHhCCCC
Q 007424 270 WKQVPDL 276 (604)
Q Consensus 270 wK~i~~~ 276 (604)
+-.-...
T Consensus 239 l~~~~~~ 245 (252)
T 4hxt_A 239 IKSGGWL 245 (252)
T ss_dssp HHHTCBC
T ss_pred HHcCCCc
Confidence 8665533
No 34
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.18 E-value=1.6e-10 Score=136.75 Aligned_cols=225 Identities=9% Similarity=-0.004 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhcc----
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR---- 92 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLk---- 92 (604)
.+..=+.|..++.-+.++.++.+++.+.+... +.+|..|.+++.+||.++++. ...++|+.+++.++..+.
T Consensus 430 f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 33333666666655555558888888866533 368999999999999999877 478999999999998776
Q ss_pred -CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCC--------ChhhH
Q 007424 93 -DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDP--------DAGKL 160 (604)
Q Consensus 93 -DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~--------i~~yL 160 (604)
|+...||+.+++++|++++|+... ..+|+|++..|+. +.++.+|..||.|+..+++..... ..+|+
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~ 587 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 577789999999999999999542 2478888888864 567889999999999999985432 24699
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcC--------------CcHHHHHH-H
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSS--------------QDWAARKA-A 222 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~lm~~L~e~L~s--------------~Dw~lRka-A 222 (604)
+.|+..+.+.+..-..+....++.+||.++++.+. -..|+..+|+.+.+.|.. .|...+-+ -
T Consensus 588 ~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~i 667 (1023)
T 4hat_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1023)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHH
Confidence 99999999998766777778899999999975432 125676677666655521 11122222 3
Q ss_pred HHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 223 AEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 223 aDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
++++.+++...|..|.|++..+...|
T Consensus 668 l~~~~~v~~~lg~~f~~~~~~i~~~~ 693 (1023)
T 4hat_C 668 IKTNVAVCTSMGADFYPQLGHIYYNM 693 (1023)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 67888889999999999986554433
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.18 E-value=3.5e-09 Score=117.15 Aligned_cols=256 Identities=13% Similarity=0.172 Sum_probs=171.4
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhh
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRN 90 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~Ivrr 90 (604)
....|.|.++.--++. |..|+.--.++-.+.++..|.....+++|++||.|+.+++.++... -+.++ +.+++.+.+.
T Consensus 91 l~kdL~~~n~~ir~~A-L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~l 168 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALA-VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRDL 168 (591)
T ss_dssp HGGGSSSSSHHHHHHH-HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHHH
Confidence 3445677775332222 5666665566667777777777777889999999999999998855 22222 3689999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccc---h-hHHHHH---------------------------------HHHHHH---c
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLK---------------------------------LLSDAL---F 130 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~---~-~~sllk---------------------------------PL~eaL---~ 130 (604)
|.|+|+.|+.+|+.+++.++..-.+. . .+..+. .+++.| +
T Consensus 169 L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 169 IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRL 248 (591)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCS
T ss_pred hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999998763211 0 000111 122222 2
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--CCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCC--------
Q 007424 131 TEQDTNAQVGAALCLAATIDAA--QDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGS-------- 198 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a--~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~p-------- 198 (604)
.+.+..|...|+.|+-.+.+.. ... +...+..+.+.|+.+++ ++..+|-.++.+|+.++... ..+.+
T Consensus 249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~ 327 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK 327 (591)
T ss_dssp CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC
T ss_pred cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheec
Confidence 4556677777777777665433 111 22344566677777665 66788999999999888532 22211
Q ss_pred ----------------------chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcch
Q 007424 199 ----------------------GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKV 256 (604)
Q Consensus 199 ----------------------yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKv 256 (604)
..+.+++.|.+|+.+.|+..|+.++.+|+.+|...++.+.-|.+..++.|. |+.
T Consensus 328 ~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~----~~~ 403 (591)
T 2vgl_B 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ----TKV 403 (591)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCC
T ss_pred cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc----ccc
Confidence 234578888899999999999999999999997654444445455555555 888
Q ss_pred hHHHHHHHHHHHH-HHhCC
Q 007424 257 KVVREVMNKMIEA-WKQVP 274 (604)
Q Consensus 257 K~VRda~~~AL~~-wK~i~ 274 (604)
..|++.+..+|.. ++..|
T Consensus 404 ~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHCc
Confidence 8998877666543 34444
No 36
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.17 E-value=1.3e-10 Score=136.39 Aligned_cols=222 Identities=10% Similarity=0.003 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhh--c-ccccHHHHHHHHHhhc-----
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNF----- 91 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h--~-i~p~L~kIl~~IvrrL----- 91 (604)
++.+.+.|+.++...+.+.++.++..|..... +.+|..|.+++.+||.++++. . -.++++.|++.+....
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 45677788888854444347888888876653 467899999999999998766 2 2456899999888733
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCCh--------hhH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA--------GKL 160 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~--------~yL 160 (604)
+|+.+.||..+++++|++++|+...+ .++++++..|+ .+.++.||..||.||.++++.....+. +|+
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 25677888889999999999985433 35666666554 466899999999999999998654433 999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc---CcCCchHHHHHHHHhhhcC------------CcHHHHHH---H
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA---VDGSGLKGLVSCLLGFLSS------------QDWAARKA---A 222 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~---~f~pyf~~lm~~L~e~L~s------------~Dw~lRka---A 222 (604)
+.|+..+..++..-.......++.+||.++.+.+ ...+|+..+|+.+.+.|.. .|-...+. .
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 9999999999987666667788999999997543 2458888888777665521 12222222 3
Q ss_pred HHHHHHHHHHcCcchhhhhhHHH
Q 007424 223 AEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 223 aDaLg~LA~~~ge~f~py~~~~i 245 (604)
+.++..++...|+.|.|+...+.
T Consensus 668 l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 668 IKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777788888988888865433
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.17 E-value=5.6e-10 Score=107.63 Aligned_cols=225 Identities=15% Similarity=0.162 Sum_probs=159.5
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHH-HHhhh-cccccH-HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIAT-LSNSH-NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv-Lae~h-~i~p~L-~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.++.|+..|. ++++..|..++.+|.. ++... .+...+ ..+++.+++.|+++++.||..|+++|+.|+..-.+.
T Consensus 13 ~~~~~~~~L~----s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 13 ELPQMTQQLN----SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp SHHHHHHHHH----SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3888888887 4466899999999965 44322 111111 257899999999999999999999999999753221
Q ss_pred --hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 117 --AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 117 --~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.+. ..+++|+..| .+.++.++..|+.||..+...........+. ..++.|+++|++++..++..++.+++.++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 111 1788888877 5678899999999999997653221111222 278999999999999999999999998775
Q ss_pred cCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 192 SGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 192 ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
........+ ..+++.|.+.|.+++..+|..|+.+|+.|+....+....+ ...++..|-..=.+.-..||..+..+|.
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 322111111 2468889999999999999999999999985332222222 2335566665556777899999888876
Q ss_pred H
Q 007424 269 A 269 (604)
Q Consensus 269 ~ 269 (604)
-
T Consensus 248 ~ 248 (252)
T 4db8_A 248 K 248 (252)
T ss_dssp T
T ss_pred H
Confidence 4
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.16 E-value=3.7e-10 Score=106.15 Aligned_cols=186 Identities=14% Similarity=0.165 Sum_probs=138.5
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS- 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~- 116 (604)
.+.|..+|. ++++.+|.+++.+|+.++.+. .....+ ...++.+++.|+++++.||..|+++|+.|+..-.+.
T Consensus 14 ~~~l~~LL~----s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 14 LPQMVQQLN----SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHhc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 555555554 557899999999999998655 111111 157899999999999999999999999998643221
Q ss_pred -hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 117 -~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
.+. ..+++|+..| .+.++.++..|+.||..+....++.....+ ..+++.|+++|++++..++..++.+++.++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 1788888888 667889999999999999864322111122 23789999999999999999999999988864
Q ss_pred CcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 193 GAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 193 g~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.......+ ...++.|.+.+.+++..+|..|+.+|+.|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 32221111 2478899999999999999999999998863
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.15 E-value=1.4e-10 Score=111.98 Aligned_cols=209 Identities=14% Similarity=0.187 Sum_probs=152.9
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--HHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--kIl~ 85 (604)
+|.+.+..|+..|..++.. +....++.|+..|.. +++.+|.+++.+|+.++.+. .....+- ..++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 4666888888888554332 123337788877763 34789999999999998754 2222222 3789
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc-h-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|+++++.||..|+++|+.|+..-... . +. ..+++|+..| .+.++.++..|+.||..+....++. ...+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~ 177 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-IQAVI 177 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence 9999999999999999999999998764321 1 11 1788888887 6678899999999999998653211 1122
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf~-~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
..+++.|+++|++++..++..++.+++.++....... ...+ .+++.|.+.+.+++..+|..|+.+|+.|+.
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 3368899999999999999999999998874321111 1122 378999999999999999999999998753
No 40
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.07 E-value=1.3e-09 Score=128.48 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhhcCCCC-hH----HHHHhhhhcC---CCCCCchhHHHHHHHHHHHhhh-c-------ccccHHHHHH
Q 007424 22 YSQAAKELDSIAATVDPTL-LP----TFLSCILSTN---SSDKPGVRKECIHVIATLSNSH-N-------LSPYITKIIN 85 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~-ip----~fL~~L~e~~---ss~kp~~RKaaI~lLGvLae~h-~-------i~p~L~kIl~ 85 (604)
+|--+..|......+.|+. +. .+...+.++. .+.+|..++++|.+|+.++|++ . ..+++|+|++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 4444446655666666666 56 5555665554 2457999999999999999987 2 1368999999
Q ss_pred HHHhhcc-----CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCC
Q 007424 86 SITRNFR-----DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 86 ~IvrrLk-----DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~-----eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
.+.+.+. ++.+.||.++++++|++++|+...+ .+++|++.+++. +.++.++..||+++..+|+.+...
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 9998876 8999999999999999999996533 589999999875 567789999999999999999988
Q ss_pred ChhhHHHHHHHHHHHhcCC---------------------chhHHHHHHHHHHHHHhcCcC----cCCchHHHHHHHHhh
Q 007424 156 DAGKLGRMEVRLERLLKSE---------------------VFKAKAAGLVVVGSVIGSGAV----DGSGLKGLVSCLLGF 210 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~---------------------~~kaK~alLsaIGSiA~ag~~----f~pyf~~lm~~L~e~ 210 (604)
+.+|++.|+..+..+|.-. .|.-.-.+..+||.++++.+. -..|+..+++-+..-
T Consensus 572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~ 651 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGK 651 (980)
T ss_dssp CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888631 133456699999999976432 125666655544333
Q ss_pred ----hcC---C-cHHHHHHHHHHH---HHHHHHcCc----------chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 211 ----LSS---Q-DWAARKAAAEAL---WRLAVVEKD----------AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 211 ----L~s---~-Dw~lRkaAaDaL---g~LA~~~ge----------~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+.. . +-.. .+.+.| |+++....+ .|.+-..-++.+|+. |-+...|||++..+++-
T Consensus 652 l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~--~~~~~~irea~~~~~~r 727 (980)
T 3ibv_A 652 ANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDR--MGFNEDIRGAVRFTSGR 727 (980)
T ss_dssp HHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHH--SCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHH
Confidence 321 1 2222 333444 555553321 233444555666674 56888999999999887
Q ss_pred HHhCCCC
Q 007424 270 WKQVPDL 276 (604)
Q Consensus 270 wK~i~~~ 276 (604)
+ |+..
T Consensus 728 ~--i~~l 732 (980)
T 3ibv_A 728 I--INVV 732 (980)
T ss_dssp H--TTTT
T ss_pred H--HHHc
Confidence 6 5544
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.03 E-value=6.4e-09 Score=113.17 Aligned_cols=248 Identities=14% Similarity=0.189 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCC
Q 007424 22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDp 94 (604)
.+.|+..|-.++.+-.+.. +..+++.|.....+.++.++..+..+|+.++.+. ..... -..+++.++..|.++
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 4566667777776543322 2445555555556778899999999999998765 11111 134677888999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLER 169 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~k 169 (604)
+..|+..|+.+|+.|+..-.... .. ..+++|...| .+.++.++..||.||..+..+..+.....+. .++|.|+.
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 99999999999999986532211 11 1677777777 6778889999999999998753322211222 27889999
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcC-cCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C--cchhhhh
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K--DAVPEFK 241 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~-f~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g--e~f~py~ 241 (604)
+|.+.++.+|..++.+|+-++..+.. ...|+- .+|+.|.+.|.+.|..++..++++|..|.... + +.+..+.
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 99999999999988899887754321 112221 25888999999999999999999999987643 2 1222222
Q ss_pred h--HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 G--KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 ~--~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. ..++.||...+++-..|++.+...|+.|
T Consensus 465 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 2478899999999999999999999887
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.02 E-value=3.1e-09 Score=118.62 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
.+..|+..|-.|. .++-++.++..|.....+.+|++||.|+.+++.+...+ -..++.+++.+.+.|.|+|+.|+.
T Consensus 123 vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~ 197 (618)
T 1w63_A 123 VQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLH 197 (618)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHH
Confidence 3445555555544 33334555666666666778999999999999998876 122346777888899999999999
Q ss_pred HHHHHHHhhhhhhccc--hhHHHHHHHHHHHcc--------------CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 007424 101 TCISTVSSLSPRVGAS--AFVTMLKLLSDALFT--------------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (604)
Q Consensus 101 Ac~~aLg~LAe~l~d~--~~~sllkPL~eaL~~--------------eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~ 164 (604)
+|+.+++.++..-.+. .+..+++.|+..|.. ..++-.|....-+|..++..-++ ..+.+..++
T Consensus 198 ~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L 276 (618)
T 1w63_A 198 TSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDIL 276 (618)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 9999999998763211 122245555554421 24677888877777777653110 111223344
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
+++++-+........+.+++|+..+...... ......++..|..||.+.|-.+|-+|+++|+.|+...++.|.+|..
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~-- 353 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS-- 353 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH--
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH--
Confidence 4444322222223344556666666654321 1122357788899999888999999999999999987888888744
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+..|..|.-..||..+.+.|..+
T Consensus 354 --~i~~~l~d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 354 --TIVDCLKDLDVSIKRRAMELSFAL 377 (618)
T ss_dssp --HHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred --HHHHHccCCChhHHHHHHHHHHHH
Confidence 445555699999998877766555
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.97 E-value=4.1e-08 Score=108.64 Aligned_cols=242 Identities=14% Similarity=0.120 Sum_probs=159.9
Q ss_pred HhhhcCChh--HHHHHHHH-HHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHH
Q 007424 12 LLNKLSDRD--TYSQAAKE-LDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSI 87 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~e-LD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~I 87 (604)
+-++|.++| ..+-|+.- +..++...+.+. ++.++. ..++++...||-+.+.++.++... ...+.-+++.+
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~----l~~s~~~~~Krl~yl~l~~~~~~~--~e~~~l~~n~l 91 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN----CMQTDNLELKKLVYLYLMNYAKSQ--PDMAIMAVNSF 91 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH----TTSSSCHHHHHHHHHHHHHHHHHS--HHHHHTTHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccC--chHHHHHHHHH
Confidence 334454444 33333333 333444444433 444444 456778899999999999998864 11223446788
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
.+.|+|+++.||..|+.+++.+... .+.. +++++...| .+.++.|+..|+.||.++.+..++.+ +. ..+++.
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~~----~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~~~-~~-~~~~~~ 164 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRVD----KITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQMV-ED-QGFLDS 164 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCSG----GGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCCCH-HH-HHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHcCChH----HHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhhChhhc-cc-ccHHHH
Confidence 8999999999999999999998633 2222 566666666 78899999999999999999554322 21 468999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~-~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
|.++|++++..++.+++.+++-++.... . ..+.....++.|...|.+.+-..+...+++|+.++ +.. .+....+
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~ 240 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSI 240 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHH
Confidence 9999999999999999999998775322 1 22333445555665555444334555666665443 211 1234566
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
++.|..+--+.-..||-.+..+|-.+
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 77777777788888887766666554
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.94 E-value=1.1e-08 Score=118.95 Aligned_cols=227 Identities=8% Similarity=0.021 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhhc-----CCC------ChHHH-HHhhhhcCCCC---CCchhHHHHHHHHHHHhhhcccccHHHHHH
Q 007424 21 TYSQAAKELDSIAATV-----DPT------LLPTF-LSCILSTNSSD---KPGVRKECIHVIATLSNSHNLSPYITKIIN 85 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-----~pe------~ip~f-L~~L~e~~ss~---kp~~RKaaI~lLGvLae~h~i~p~L~kIl~ 85 (604)
....|+-.|-.++..+ +.. .+..| ...+.+...++ .|.+|..++.++|..++.. -..+++.+++
T Consensus 421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~ 499 (960)
T 1wa5_C 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLIELMP 499 (960)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHHHHHH
Confidence 5567888888888653 222 55444 44554444444 7899999999999998753 3358999999
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhc----------cchhHHHHHHHHHHHc---cCCC---h--hHHHHHHHHHHH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVG----------ASAFVTMLKLLSDALF---TEQD---T--NAQVGAALCLAA 147 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~----------d~~~~sllkPL~eaL~---~eqd---k--~vQ~~AA~cLaa 147 (604)
.+++.|.|++..||.+|+.|+..|++... ...+.-++.+|+..|+ .+.. . .....+..||..
T Consensus 500 ~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~ 579 (960)
T 1wa5_C 500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579 (960)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHH
Confidence 99999999999999999999999998532 1112226666666654 2210 1 134678999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHhcC----C-chhHHHHHHHHHHHHHhc-Cc-CcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 148 TIDAAQDPDAGKLGRMEVRLERLLKS----E-VFKAKAAGLVVVGSVIGS-GA-VDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 148 lIE~a~d~i~~yL~~L~~RL~klL~s----~-~~kaK~alLsaIGSiA~a-g~-~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+++.+++.+.+|+..|+++|...+.. + +......++++|++++.+ +. .+.+|.+.++|.+...|..+.....-
T Consensus 580 vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~ 659 (960)
T 1wa5_C 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIP 659 (960)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 99999999999999999998877743 3 444556799999999986 32 34478888999999988776556677
Q ss_pred HHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 221 AAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 221 aAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
.+.+.++.+.... +.|.+|..++...|.
T Consensus 660 ~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 660 YVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 7899999988776 566666665555444
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.93 E-value=1.1e-08 Score=111.21 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCC
Q 007424 22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDp 94 (604)
.+.|+..|-.++.+-.+.. +..+++.|.....+.++.++..+..+|+.|+... ..... -..+++.+++.|.++
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 4556667777776543322 2445555555566778899999999999998765 11111 124678888999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLER 169 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~k 169 (604)
+..|+..|+.+|+.|+..-.... .. ..+++|...| .+.+..++..||.+|..+..+..+...... ..++|.|+.
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 99999999999999986542211 11 1566666655 677888999999999998765322111112 237889999
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcC-cCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C--cchhhhh
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K--DAVPEFK 241 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~-f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g--e~f~py~ 241 (604)
+|.+.++.+|..+..+|+-++..+.. ...|+ ..+++.|.+.|.+.|..++..++++|..|.... + +.+..+.
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 445 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH
Confidence 99999999999988899887754321 11222 135788999999999999999999999988643 2 1222222
Q ss_pred --hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 --GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 --~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...++.||.+++++-..|++.+...|+.|
T Consensus 446 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 446 EECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23578899999999999999999999877
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.92 E-value=3e-08 Score=107.92 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=173.8
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-c--ccccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-N--LSPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-~--i~p~L~kIl 84 (604)
.|.+....|+..|-.|+.+ +....+++++.+|..... .......+.+..+|..++.+. . -...+..++
T Consensus 174 ~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 4666888888889888864 234458999999865432 223345677788888888765 2 223467899
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccch-h---HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-F---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~---~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
|.+++.|.+++..|+..|+++|+.++..-.+.. . ..++++|++.| .+.+..++..|+.||..++...+. ....+
T Consensus 254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i 331 (529)
T 3tpo_A 254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE-QTQKV 331 (529)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchH-HHHHH
Confidence 999999999999999999999999987643211 1 12788888888 677888999999999888754221 11111
Q ss_pred --HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-c
Q 007424 161 --GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D 235 (604)
Q Consensus 161 --~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e 235 (604)
...++.|.++|++++..+|..+..+|+-++....... ... ..++|.|...|.+.++.+|+.|+.+|+.++.... +
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~ 411 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE 411 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 1256678899999998999888888888774322111 111 2478899999999999999999999999987433 2
Q ss_pred chhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 236 AVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 236 ~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...-+ ...+|+.|-..=..+-..|+..+.+||.-+=+
T Consensus 412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22111 12233333332235567788888888766543
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.91 E-value=7.5e-08 Score=99.00 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHhhcC-------CCChHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--HHHHHHH
Q 007424 20 DTYSQAAKELDSIAATVD-------PTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIINSIT 88 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~-------pe~ip~fL~-~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--kIl~~Iv 88 (604)
+....|+..|..++.+++ ...+|+|+. +|. ++++.+|..|+.+||.++... ...-.+- ..+|.++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 466778888888887654 223788888 664 567899999999999998754 1111111 4677777
Q ss_pred hhcc-CCChhHHHHHHHHHHhhhhhhccc--hhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-
Q 007424 89 RNFR-DKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR- 162 (604)
Q Consensus 89 rrLk-DpDs~VR~Ac~~aLg~LAe~l~d~--~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~- 162 (604)
+.|+ +++..||..|++||+.|+..-... .+.. .+++|+..| .+.+..+|..||.||..++.. ......++-+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHc
Confidence 7887 578899999999999998754321 2222 788888888 567889999999999999987 3333445544
Q ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 163 -L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
.++.|+.+|.+++..++..++.+|+.++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999865
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.2e-08 Score=100.16 Aligned_cols=202 Identities=14% Similarity=0.102 Sum_probs=144.0
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhh-------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---- 116 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h-------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---- 116 (604)
|.+-..|-+|-.|++|+-.|..+.... -..+.+..+++.+.+.+.|++..|...++.++..++..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 346677889999999998887765544 122235566778889999999999999999999999876431
Q ss_pred ----hh-HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 117 ----AF-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 117 ----~~-~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.. ..+++.|++-.+++..+.+...|..||..+++... .+..+++-+...+++.+.+++.+.+..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 12677777764467777787788888888887643 234566778889999999999999999988775
Q ss_pred -cCcCc---CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHH
Q 007424 192 -SGAVD---GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREV 262 (604)
Q Consensus 192 -ag~~f---~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda 262 (604)
-|... .+.++.+++.|..+|.+.|-.+|.+|+++++.|-..+|+.+... .+ -=+|++|++--.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~----~~----~~l~~lkp~~~k 235 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLL----EE----ILFKKLKPIQVK 235 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-------------------CTTSSCHHHHH
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhh----hh----hhhhcCCHHHHH
Confidence 34222 24566788888888999999999999999999999888544211 11 114777776543
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.88 E-value=2.1e-08 Score=94.14 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=133.5
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+...+.+++.|+++|+.||..|+++|+.|+..-.+. .+. ..+++|+..| .+.++.++..|+.||..+....++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 344567888899999999999999999998653221 111 2788888888 56688999999999999875322111
Q ss_pred hhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cc-hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 157 AGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 157 ~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-py-f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
...+ ...++.|+++|++++..++..++.+|+.++....... .. -..+++.|.+.|.+++..+|..|+.+|+.|+...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 1111 1267899999999999999999999998774221111 11 1247899999999999999999999999998743
Q ss_pred Ccchhh-hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 234 KDAVPE-FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 234 ge~f~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+.... ....++..|-..--+.-..||+.+..||..+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 221111 1233455555554578889999999998765
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.82 E-value=5.1e-08 Score=105.85 Aligned_cols=253 Identities=13% Similarity=0.124 Sum_probs=171.6
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-cc--cccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-NL--SPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L--------~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-~i--~p~L~kIl 84 (604)
.|.+.+..|+..|-.|+.+- ....+++++.+|..... .......+.+..++..++.+. .. ...+..++
T Consensus 155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 234 (510)
T 3ul1_B 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 46678889999998888642 34458899988865432 223345777888888888766 22 22457899
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccch-h---HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-F---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~---~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
|.+++.|.+++..|+..|+++|+.|+..-.+.. . ..++++|++.| .+.+..++..|+.||..++...+......+
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 999999999999999999999999997643211 1 11788888887 677888999999999888654221111111
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cc
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DA 236 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~ 236 (604)
...++.|.++|++++..+|..+..+|+-++....... ..+ ..++|.|...|.+.++.+|+.|+.+|+.++.... +.
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 1245667889999998899888888887664221111 111 2478899999999999999999999999987433 22
Q ss_pred hhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 237 VPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 237 f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..-+ ...+++.|-..=-.+-..|+..+.+||.-+
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1111 122333333333356677888888887654
No 51
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.78 E-value=4.1e-07 Score=88.72 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=154.8
Q ss_pred HHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 43 ~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
.||..+..+...+-|-++|.+|.++-++++.+ .+.|.+.|++.-+-+ +...-.-++...++|++|..= +....
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~--Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK--PELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC--HHHHH
Confidence 46777777777888999999999999999999 888888888765543 233346789999999999873 22222
Q ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCc
Q 007424 121 -MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG 199 (604)
Q Consensus 121 -llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~py 199 (604)
.++-||..+ .--++.+.++.+|+|..+.-+-+ ..++.+...++-+|.+++-.-|-+++..|+ +.|....-|
T Consensus 107 ~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~---alGen~~~y 178 (253)
T 2db0_A 107 SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIE---AMGENSFKY 178 (253)
T ss_dssp HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCTTTHHH
T ss_pred hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHhccCccc
Confidence 444444444 23388899999999988876542 456778888999999999888999999888 445444456
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHH
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREV 262 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda 262 (604)
..+.+|.|...|.+.|--+|..|.++|+.+|+.- +.|.+.....++-|+..--+=++.||++
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHCCCSCHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6667788899999999999999999999999854 3488777777777774444444455544
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.75 E-value=2.8e-07 Score=105.64 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=165.0
Q ss_pred HHHHhhhcCC--hhHHHHHHHHHHHHHhh-cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHH
Q 007424 9 VNGLLNKLSD--RDTYSQAAKELDSIAAT-VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITK 82 (604)
Q Consensus 9 vl~~L~KLsD--rDT~r~A~~eLD~lA~~-L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~k 82 (604)
+...+.+|.+ .+-++.+++.|..+... +....+|.|+.+|. +.++.+|+.|+.+|+.|+... ......+.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~----~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC----CCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 3455666643 34556677777654332 33333888888886 456799999999999998754 11123457
Q ss_pred HHHHHHhhccCC-ChhHHHHHHHHHHhhhhhhccc-hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 83 IINSITRNFRDK-NSALQATCISTVSSLSPRVGAS-AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 83 Il~~IvrrLkDp-Ds~VR~Ac~~aLg~LAe~l~d~-~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+++.|++.|++. ++.+|..|+.+|..|+..-... .+. ..+++|++.| .+.++.++..|+.||..+.......-..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 899999999754 8899999999999988653111 111 2788888888 5667889999999999998764332112
Q ss_pred hH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC----------cCc-----------------------------CC
Q 007424 159 KL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG----------AVD-----------------------------GS 198 (604)
Q Consensus 159 yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag----------~~f-----------------------------~p 198 (604)
+. ...++.|+++|++++.+++..++.++..++... +.. ..
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 22 247888999998888777777666666544210 000 00
Q ss_pred chH-----HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GLK-----GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf~-----~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.. .+++.|..+|.+.+..++..|+.+|..|+.... +.+.......++.|+ ++-..||..+..+|..+
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~----~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNL 426 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHc----CCCHHHHHHHHHHHHHH
Confidence 011 246888888888888899999999999987553 223333344444454 67788999888888766
No 53
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.73 E-value=3.5e-07 Score=105.88 Aligned_cols=256 Identities=11% Similarity=0.126 Sum_probs=177.4
Q ss_pred HHHHhhhcC--Chh--HHHHHHHHHHHHHhhcC--CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 9 VNGLLNKLS--DRD--TYSQAAKELDSIAATVD--PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 9 vl~~L~KLs--DrD--T~r~A~~eLD~lA~~L~--pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+++.|..|. |.+ -+..|+..|-.++..+. ++.++.+|+.|.... + +.++.+|..+|..+|+.+ .+.||+
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 455666665 323 45777888888888875 555888888887776 2 789999999999999988 888999
Q ss_pred HHHHHHHHhhccCC--ChhHHHHHHHHHHhhhhhhc-c--ch-hHHHHHHHHHHHc---cCC--Ch---hHHHHHHHHHH
Q 007424 81 TKIINSITRNFRDK--NSALQATCISTVSSLSPRVG-A--SA-FVTMLKLLSDALF---TEQ--DT---NAQVGAALCLA 146 (604)
Q Consensus 81 ~kIl~~IvrrLkDp--Ds~VR~Ac~~aLg~LAe~l~-d--~~-~~sllkPL~eaL~---~eq--dk---~vQ~~AA~cLa 146 (604)
+.|+..+.+.+..+ +..++..+.+++|.++..+. + .+ +..++.|++..+. ... +. .....+-.+|.
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 99999999999884 56899999999999988653 1 12 3348888888763 111 21 22233444556
Q ss_pred HHHhhcC-------------CCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhh
Q 007424 147 ATIDAAQ-------------DPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGF 210 (604)
Q Consensus 147 alIE~a~-------------d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~ 210 (604)
.++.... +...+|++.+++-+.++|+.- +..+...+..+++.++. .|+.+.||++.+++.|...
T Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS 742 (971)
T ss_dssp HHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH
T ss_pred HHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH
Confidence 6666543 245678888999888888532 45677888889999885 5777889999999999888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCc----------chhhhhhHHHHHHHhc---cCcchhHHHHHHHHHHHHH
Q 007424 211 LSSQDWAARKAAAEALWRLAVVEKD----------AVPEFKGKCLKIFESK---RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 211 L~s~Dw~lRkaAaDaLg~LA~~~ge----------~f~py~~~~i~~Le~c---RfDKvK~VRda~~~AL~~w 270 (604)
+..... ..+++.++.+....|. .|.++...++..|..+ -+|-.+.||++...-+..+
T Consensus 743 ~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~ 812 (971)
T 2x1g_F 743 FQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQI 812 (971)
T ss_dssp CC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHH
T ss_pred HhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHH
Confidence 876443 3477777777776653 2233345556666665 4555677887776665544
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.71 E-value=1.8e-07 Score=96.20 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHHhhhcccccH--HHHHHHHHh-hccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHc
Q 007424 58 GVRKECIHVIATLSNSHNLSPYI--TKIINSITR-NFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALF 130 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p~L--~kIl~~Ivr-rLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~ 130 (604)
..|..++..|..+++....+.-+ --.+|.++. .|+.+++.||..|+++||.++..-.+. -+. ..++||+..|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 35666777777777644111111 134677777 999999999999999999998753221 111 28899998885
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH--HHHHHH
Q 007424 131 TEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCL 207 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~--~lm~~L 207 (604)
.+.+..++..|++||..++.+-++.....+ ...++-|..+|++++++++..++.+|+.++........++- .+++.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 455788999999999999875332111122 13788899999999999999999999988754333222332 378899
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 208 LGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 208 ~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
.+.|.+.|..+|..|+.+|+.|+..
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999975
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.68 E-value=2.5e-06 Score=94.68 Aligned_cols=244 Identities=13% Similarity=0.054 Sum_probs=171.3
Q ss_pred ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+.+ + ....++.|+.+|. ++++.+|+.++.+|+.++... .....+ ..+++.+
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L 145 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 145 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH
Confidence 667888899888887754 1 2323788777775 346789999999999998764 111111 4678999
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR- 162 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~- 162 (604)
++.|+++++.++.+++.+|..|+..-.+. .+. ..+++|+..|.......++..++.+|..+..+ .....++-.
T Consensus 146 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~~~~l~~~ 223 (644)
T 2z6h_A 146 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 223 (644)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC--TTHHHHHHHT
T ss_pred HHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence 99999999999999999999998532111 111 26888888885444456777888888777642 222333322
Q ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchh
Q 007424 163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVP 238 (604)
Q Consensus 163 -L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~ 238 (604)
.++.|+++|++.+..++..++.+++.++...... .....+++.|...|.++++.+|..|+.+|+.|+.... +.+.
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~ 302 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6889999999988888888888888887543222 3446789999999999999999999999999986321 1111
Q ss_pred h--hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 E--FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p--y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. .....++.|.... ....||..+..||.-+
T Consensus 303 ~~g~v~~Lv~lL~~~~--~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 303 QVGGIEALVRTVLRAG--DREDITEPAICALRHL 334 (644)
T ss_dssp HTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHccC--CcHHHHHHHHHHHHHH
Confidence 1 1244566666431 1257888888888766
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.66 E-value=2.3e-06 Score=90.76 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=160.6
Q ss_pred ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+.. + ....+|.|+.+|. ++++..|+.++.+|+.++... .....+ ...+|.+
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 666778888888777653 1 2223677777665 345778888888888887754 212222 4567888
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++.|++++..|+.+++.++..|+..-.+ ..+. ..+++|+..|........+..++.+|..+... +.....+ .
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~ 226 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 226 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence 8888888888888888888887753111 0111 15777777774444455666677777666542 2222222 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~ 238 (604)
..++.|.++|++++..++..++.+++.++...... .....++|.|.+.|.+++..+|..|+.+|+.|+.... +.+.
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 37888999999888888888888888877543222 2346789999999999999999999999999976321 2221
Q ss_pred h--hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 E--FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p--y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. .....++.|..... ...||..+..+|.-+
T Consensus 306 ~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGD--REDITEPAICALRHL 337 (529)
T ss_dssp HTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHccCC--HHHHHHHHHHHHHHH
Confidence 1 12455666664321 256888877777665
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.65 E-value=5.8e-07 Score=95.27 Aligned_cols=223 Identities=9% Similarity=0.108 Sum_probs=142.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--chh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~ 118 (604)
++.++..+. +.++..++.++.+|+.++....-...+..++|.+++.|.++++.||..|+++|+.|+..-.+ ..+
T Consensus 229 ~~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 229 MQALGLHLT----DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp HHHHHTTTT----SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 555555554 44678999999999999887611224578999999999999999999999999999885321 111
Q ss_pred H--HHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCC--hhhH--HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHH
Q 007424 119 V--TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLKSEV-FKAKAAGLVVVGSVI 190 (604)
Q Consensus 119 ~--sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i--~~yL--~~L~~RL~klL~s~~-~kaK~alLsaIGSiA 190 (604)
. ..+++|+..|... .++.++..|+.||..+....++.. ...+ ...++.|.++|.++. ..++..++.+|+-++
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1 2688888888542 347899999999999865432210 0111 125788999999886 478888888888776
Q ss_pred hcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHH----------------------HHHHcC--cchhhhhhHH
Q 007424 191 GSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWR----------------------LAVVEK--DAVPEFKGKC 244 (604)
Q Consensus 191 ~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~----------------------LA~~~g--e~f~py~~~~ 244 (604)
. +......+ ..++|.|.+.|.+.++.+|+.|+.+|+. |+.... ..+.. ..+
T Consensus 385 ~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~--~~~ 461 (529)
T 1jdh_A 385 L-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG--LNT 461 (529)
T ss_dssp T-SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH--TTC
T ss_pred c-ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhc--cCC
Confidence 4 21111111 1367888888888889998877655443 222100 01111 123
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+..|-..=.|....||..+..+|..+
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 34444444588899999988887765
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.64 E-value=1.4e-06 Score=102.72 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=187.7
Q ss_pred cCChhHHHHHHHHHHHHHhh-cCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHh
Q 007424 16 LSDRDTYSQAAKELDSIAAT-VDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITR 89 (604)
Q Consensus 16 LsDrDT~r~A~~eLD~lA~~-L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~Ivr 89 (604)
.+|.+..+.|+..|-.+... .....+ .-++..|.....+-|+. ..|+.+++.||+.. -+-||+-.++|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 25 VATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 35566667777777665552 222112 34666666655544444 88999999998544 557888888999999
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 90 NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 90 rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
.+-|-+..||.||-.|+-+|...+.-.....+++.|+++|-..+......+|..+|+.+++.+++.+.-+|+.++|-+..
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 182 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE 182 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh
Confidence 99999999999999999999998832223449999999996556778999999999999999877777789999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHH----------------------------------HhhhcC
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCL----------------------------------LGFLSS 213 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L----------------------------------~e~L~s 213 (604)
++-+....+|.++..++-.+.. .+ .+..|+.+.+|.+| ..-|..
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNE 262 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTS
T ss_pred hcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhcc
Confidence 9988777788887777776554 32 23334444444444 444445
Q ss_pred CcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHh-ccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 214 QDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFES-KRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~-cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
....++..++-.+.-|..-+. ....||....+.-|+. +--=--+.||+.+.+|+..++.+.+.
T Consensus 263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 566666667777888887664 4666776666666653 22223578999999999999999877
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.63 E-value=2.1e-06 Score=98.92 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCCh
Q 007424 21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs 96 (604)
....|+-.|-.++..++.+. ++.++..|.. ...+.+.+|..++.++|..++.. .-..||+.+++.|++.|.| +
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~ 541 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--P 541 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--G
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--c
Confidence 56667888888998886432 6777876654 34357789999999999998754 2236899999999999977 7
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERL 170 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~e--qdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~kl 170 (604)
.|+.+|+.++..|++.+.+ .+.-++.+|+..|+ .. -+...+....-|+..++..++ +...+|+..+|+.+...
T Consensus 542 ~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 542 ELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987643 12224555555442 22 355678888889999998776 44568888888776665
Q ss_pred hc----CC-chhHH---HHHHHHHHHHHhc-CcC----------------------cCCchHHHHHHHHhhhc--CCcHH
Q 007424 171 LK----SE-VFKAK---AAGLVVVGSVIGS-GAV----------------------DGSGLKGLVSCLLGFLS--SQDWA 217 (604)
Q Consensus 171 L~----s~-~~kaK---~alLsaIGSiA~a-g~~----------------------f~pyf~~lm~~L~e~L~--s~Dw~ 217 (604)
++ .+ +...+ ..++++|++++.+ +.. +.+++..+++.+...|. .++-.
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 700 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH
Confidence 53 22 22222 3577788888753 321 12467778888777664 24568
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
++..++.+++.++...|+.|.||...+++.+
T Consensus 701 v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l 731 (963)
T 2x19_B 701 VVEAVCAIFEKSVKTLLDDFAPMVPQLCEML 731 (963)
T ss_dssp HHHHHHHHHHHHHHHSSSTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 8999999999999999988888876655543
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.63 E-value=7e-07 Score=103.40 Aligned_cols=254 Identities=9% Similarity=0.047 Sum_probs=170.3
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhcCCC---------------------------------------C-hHHHHHh
Q 007424 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPT---------------------------------------L-LPTFLSC 47 (604)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe---------------------------------------~-ip~fL~~ 47 (604)
++++.|. -+|.....-|+..|-.|+..-+.. . +|+|+.+
T Consensus 425 ~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 425 ALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444443 256677778888888888743211 2 6777766
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhhcccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-c-----hhH
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-S-----AFV 119 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~-----~~~ 119 (604)
+. ++++.+|+.++.+|+.+|...-...++ .-.+|.+++.|++.+..++..|++||+.|+..... . ...
T Consensus 504 L~----s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~ 579 (810)
T 3now_A 504 AK----TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579 (810)
T ss_dssp HT----CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred Hc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence 65 556899999999999998533111111 13577888889999999999999999999865321 1 112
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
..++||+..|..+.+...+.-|+.||..+....++.....+. ..+++|..+|.+++..++.+++.+|+-++........
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 378999998743334344567889998887653211111121 2678999999999999999999999988752111112
Q ss_pred ch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---c-chh--hhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---D-AVP--EFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e-~f~--py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+. ...++.|..+|.+++..+|++|+.+|+.|+.... . .+. ......+++|. +.-..||..+..||.-+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~----s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA----NPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT----CSSHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC----CCCHHHHHHHHHHHHHH
Confidence 22 2478999999999999999999999999987322 1 222 13345566665 45666777777776544
No 61
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.60 E-value=1.2e-06 Score=101.62 Aligned_cols=254 Identities=10% Similarity=0.088 Sum_probs=180.3
Q ss_pred CChhHHHHHHHHHHHHHhh-------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---c-c-cccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT-------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---N-L-SPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~-------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~-i-~p~L~kIl 84 (604)
++.+.+..|+..|-.||.+ +....+|+|+.+|.+. .+..|+.|..+|+.|+... . + .......+
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 5677888899999999864 1233389999998642 3578999999999998764 2 1 11234588
Q ss_pred HHHHhhccCCCh-hHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 85 NSITRNFRDKNS-ALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 85 ~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
|.++..|..... ..+..+++||+.|+..-.+ ..+. ..+++|.+.|. +.++.+|..|+.||..++-+-. ....+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~-~~~~~ 660 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSED-VIKMF 660 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChH-HHHHH
Confidence 999999874433 4456789999999976321 1111 17888888885 5677899999999999876421 11122
Q ss_pred H--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 160 L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 160 L--~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+ ...++-|+++|++++..+|.++..+|+.++.. .......+ ...++.|.++|.++|..+|+.|+.+|+.|+...+
T Consensus 661 v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 2 13677899999999999999988998888752 21111112 3578999999999999999999999999987433
Q ss_pred cchhh-hhhHHHHHHHhcc-Cc--chhHHHHHHHHHHHHHHhCCCC
Q 007424 235 DAVPE-FKGKCLKIFESKR-FD--KVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 235 e~f~p-y~~~~i~~Le~cR-fD--KvK~VRda~~~AL~~wK~i~~~ 276 (604)
+...- ...-+++.|..+- .- |-..|++.+.+||+.+-++.-.
T Consensus 741 e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 741 EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 32211 1256788888873 32 5788999999999887665544
No 62
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.59 E-value=6.2e-07 Score=99.60 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=164.0
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhcc
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFR 92 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLk 92 (604)
++.+..+.|+..|-.|+..-+... +..++..|.....+.++.+|+.+..+|+.|+... .....+ ...++.+++.|.
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 355678888888988888754322 3444444444445667899999999999998753 111111 236777888887
Q ss_pred CC-C-hhHHHHHHHHHHhhhhhhcc----ch-h--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 93 DK-N-SALQATCISTVSSLSPRVGA----SA-F--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 93 Dp-D-s~VR~Ac~~aLg~LAe~l~d----~~-~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++ + ..||..|+.+|+.|+....+ +. + ...+++|+..|..+.++.++..|+.+|..+..+... ...+ .
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~--~~~i~~~ 393 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN--HAPLREQ 393 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG--HHHHHHT
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH--HHHHHHc
Confidence 63 3 68999999999999864321 11 1 126888888884444568999999999988764221 1222 2
Q ss_pred HHHHHHHHHhcCCchh----------------------HHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHH
Q 007424 162 RMEVRLERLLKSEVFK----------------------AKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 162 ~L~~RL~klL~s~~~k----------------------aK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~ 217 (604)
.+++.|+++|.+.++. ++.+++.+++.++... ....++ ...++.|.++|.+.+..
T Consensus 394 ~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~ 472 (644)
T 2z6h_A 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIEN 472 (644)
T ss_dssp THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHH
Confidence 2677788888764433 3445555666554321 100111 23678899999999999
Q ss_pred HHHHHHHHHHHHHHHc--CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 218 ARKAAAEALWRLAVVE--KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~--ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+|+.|+.+|+.|+... .+.|. ....+..|..+-.|.-..||..+..||..+
T Consensus 473 v~~~a~~aL~~l~~~~~~~~~i~--~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 473 IQRVAAGVLCELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHH--HcCChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999988521 11221 133567788888899999999999888765
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.59 E-value=1.4e-06 Score=99.79 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=161.8
Q ss_pred ChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L-------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+..- ....|+.|+.+|. +.++.+|++++.+|+.|+... .....+ ..+++.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence 6678888888888776531 1223677776665 345788999999999998765 222222 3578888
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++.|++++..|+..++.+|..++..-.+. .+. ..+++|+..|........+..++.+|..+... ......+ .
T Consensus 282 v~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~ 359 (780)
T 2z6g_A 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 359 (780)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TTHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hHHHHHHHHh
Confidence 88999888889998888888777421110 011 26777888774444445666777777777643 1111222 1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc---chh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD---AVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge---~f~ 238 (604)
..++.|+.+|.+.+..++..++.+++.++.....+ .....+++.|...|.+++|.+|..|+.+|+.|+....+ .+.
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 26788999999888777777788888777543222 23467999999999999999999999999999763211 111
Q ss_pred --hhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 --EFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 --py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.....+++.|.... ....||+.+..+|.-+
T Consensus 439 ~~g~i~~Lv~lL~~~~--~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAG--DREDITEPAICALRHL 470 (780)
T ss_dssp TTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 12245566665321 1137888887777655
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.57 E-value=9.5e-07 Score=99.05 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=145.2
Q ss_pred HHHHHhhcCCCChHHHHHhhhhcC--CCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHH
Q 007424 29 LDSIAATVDPTLLPTFLSCILSTN--SSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCIST 105 (604)
Q Consensus 29 LD~lA~~L~pe~ip~fL~~L~e~~--ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~a 105 (604)
|..|+.--.|+-++.++..|.... .+.+|++||.|+.++.-+...+ -+.++ +.+++.+.+.|.|+|+.|..+|+.+
T Consensus 132 Lr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~ 210 (621)
T 2vgl_A 132 LHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-GDWTSRVVHLLNDQHLGVVTAATSL 210 (621)
T ss_dssp HHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-CSCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-hhHHHHHHHHhCCCCccHHHHHHHH
Confidence 334444334444555555555555 6778999999999999998866 33342 4566777888999999999999999
Q ss_pred HHhhhhhhccchhHHHHHHHHHHH---ccC--C-----------ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 106 VSSLSPRVGASAFVTMLKLLSDAL---FTE--Q-----------DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 106 Lg~LAe~l~d~~~~sllkPL~eaL---~~e--q-----------dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
+..++..-.+ .+..+++.++..| +.. - ++-.|...--.|..+...-+....+.+..++++++.
T Consensus 211 l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 211 ITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9888775321 1112333333322 111 1 455665544444433321011112344555556654
Q ss_pred Hhc-CC---chh----HHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh
Q 007424 170 LLK-SE---VFK----AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE 239 (604)
Q Consensus 170 lL~-s~---~~k----aK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p 239 (604)
.+. .+ ..+ ..+-+++|+..+...+ .+.++...++..|..+|.+.|-.+|-.|+++|..|+...+ +.|.+
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~ 368 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT 368 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH
Confidence 432 22 111 1244677777777654 2336677889999999999999999999999999987665 56666
Q ss_pred hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|...++..| ++|.-..||.-+.+.|-.+
T Consensus 369 ~~~~i~~~L---~~d~d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 369 HIETVINAL---KTERDVSVRQRAVDLLYAM 396 (621)
T ss_dssp THHHHHHHH---TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCHhHHHHHHHHHHHH
Confidence 655544444 4577788887665554433
No 65
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.54 E-value=2.8e-06 Score=94.77 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=158.6
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccC---
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD--- 93 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkD--- 93 (604)
+.--++.|+-.|-.+... .|+.++.|++.|.+...+.++.++-+|+.+|+.++... -...++.+++|.+++.|++
T Consensus 155 ~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp CHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHc
Confidence 344677888888888774 56677888888888888889999999999999997654 2223445556666665553
Q ss_pred ------------CChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHcc-CC----ChhHHHHHHHHHHHHHhhcCCC
Q 007424 94 ------------KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFT-EQ----DTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 94 ------------pDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~-eq----dk~vQ~~AA~cLaalIE~a~d~ 155 (604)
+++-++-..++.++.++..- +.... ++..|...+-. +. +..+...|+.|+..+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~- 306 (618)
T 1w63_A 234 SGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KS- 306 (618)
T ss_dssp SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CC-
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CC-
Confidence 57788888999999988652 21111 33333332210 11 223444555554332 21
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
..+.....+..|.++|.+++..+|-+++.+++.++... ..+.+|. ..+..+|.++|..+|+.|+|+|+.|+..
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~~-- 380 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVNG-- 380 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCCS--
T ss_pred CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHccc--
Confidence 12233456778888999888899999999999998743 3333444 4566667789999999999999998763
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+.+.......++.+++ .-..+|..+..+|..+-.
T Consensus 381 ~nv~~iv~eL~~~l~~----~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 381 NNIRGMMKELLYFLDS----CEPEFKADCASGIFLAAE 414 (618)
T ss_dssp SSTHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHH
Confidence 3455555666666763 345788888888877744
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.48 E-value=1.3e-06 Score=97.96 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=142.8
Q ss_pred HHHHHHHHH-HHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKEL-DSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eL-D~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
..+-++.-| -.+...-|-+. ++..+.++ ++++...||-+++.+..+++.. ...+--++..+.+-|+|+++.+
T Consensus 54 ~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~----~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~~i 127 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDIDFGHMEAVNLL----SSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNPTF 127 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSCHHHHHHGG----GCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHh----cCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCHHH
Confidence 344444333 23333334333 44444444 4678899999999999998876 2334566789999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch
Q 007424 99 QATCISTVSSLSPRVGASAFVT-MLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF 176 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~ 176 (604)
|..|+.+++.+... .+.. +++++...|. .+.++.|...|++|+.++.+-.++.+ ++ +.++++|.++|++++.
T Consensus 128 r~lALr~L~~i~~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~ 201 (621)
T 2vgl_A 128 MGLALHCIANVGSR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHL 201 (621)
T ss_dssp HHHHHHHHHHHCCH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCH
T ss_pred HHHHHHHhhccCCH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCc
Confidence 99999999999653 2222 6666666663 57899999999999999999654322 22 3688899999999899
Q ss_pred hHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCC-------------cHHHHHHHHHHHHHHHH
Q 007424 177 KAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQ-------------DWAARKAAAEALWRLAV 231 (604)
Q Consensus 177 kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~-------------Dw~lRkaAaDaLg~LA~ 231 (604)
.++.+++.++..++... ..+.++++.++..|..++... +-+++-..++.|+.++.
T Consensus 202 ~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 202 GVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 99999999999988643 456688888888887776431 33456666777766553
No 67
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.48 E-value=2.3e-06 Score=89.90 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=165.3
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCchhHHHHHHHHHHHhhh-c
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-N 75 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~-------~ss~kp~~RKaaI~lLGvLae~h-~ 75 (604)
+.+...+.+|-+|+-.+..|-++-+ ...+++++..|... ..+.++..++++..+|..||.+. -
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~ 117 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH---------cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3444555566666432333433322 22377777777421 12234678999999999998765 1
Q ss_pred cccc---HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh-cc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 76 LSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRV-GA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 76 i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l-~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
.... ..-+||.+++.|+.++..|+..++++|+.|+..- .+ ..+. ..++||+..|....+..++..|+.||-.
T Consensus 118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222 2456899999999999999999999999998641 11 1111 2799999987666677889888888887
Q ss_pred HHhhcCCCChhhH--HHHHHHHHHHhcCCch----hHHHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcH
Q 007424 148 TIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KAKAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDW 216 (604)
Q Consensus 148 lIE~a~d~i~~yL--~~L~~RL~klL~s~~~----kaK~alLsaIGSiA~---ag~~f~pyf--~~lm~~L~e~L~s~Dw 216 (604)
+.-..++.-.... .-.+|-|.++|.+.+. .++..+..++..++. ........+ ...+|.|.+.|.+.+.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 7652111111222 3477889999987643 366666666666653 121111111 1368899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcchhh-hhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 217 AARKAAAEALWRLAVVEKDAVPE-FKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 217 ~lRkaAaDaLg~LA~~~ge~f~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+++.|+-+|+.|+....+.... ...-++..|-..=.++-+.||+.+..||.-+-
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999998421111111 11344555555555677888999888887664
No 68
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.46 E-value=1.4e-05 Score=81.49 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=135.8
Q ss_pred CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-----h--hHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-----A--FVTMLKLLS 126 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-----~--~~sllkPL~ 126 (604)
++..|-+++-.|-...+.. .+...++-++..+.-|+.|++..|-..|++.|..+...+.+. . ...+++.|+
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv 138 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 5556666664444433333 556678888888888999999999999999999998888652 1 123899999
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHH-
Q 007424 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLV- 204 (604)
Q Consensus 127 eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm- 204 (604)
+-| |++...+...+-.+|..+.+..+ ..++.+.+++.+++.+.++|...+..|++++. .|..+ ...+
T Consensus 139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 999 78877788888777866665432 25588889999999999999999999999996 44332 3356
Q ss_pred --HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 205 --SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 205 --~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+.+..++.+.|-.+|.+|+.+|..+=..+||.+--|
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 889999999999999999999999999999766555
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.45 E-value=4.1e-06 Score=91.16 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=153.4
Q ss_pred ChHHHHHhhhhc-------CCCCCCchhHHHHHHHHHHHhhh-ccccc---HHHHHHHHHhhccCCChhHHHHHHHHHHh
Q 007424 40 LLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-NLSPY---ITKIINSITRNFRDKNSALQATCISTVSS 108 (604)
Q Consensus 40 ~ip~fL~~L~e~-------~ss~kp~~RKaaI~lLGvLae~h-~i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~ 108 (604)
.+++++..|... ..+.++..++++..+|..||.+. ..... ..-+||.+++.|+.++..|+..|+++|+.
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 378888888421 11234568999999999999765 12222 34578999999999999999999999999
Q ss_pred hhhhhc-c--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCCch----h
Q 007424 109 LSPRVG-A--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVF----K 177 (604)
Q Consensus 109 LAe~l~-d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~~~----k 177 (604)
|+..-. + ..+. ..++||+..|....+..++..|+.||..+.-..++.-.... .-.+|-|.++|.+.+. .
T Consensus 270 Ls~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~ 349 (458)
T 3nmz_A 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349 (458)
T ss_dssp HTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTH
T ss_pred HhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHH
Confidence 986411 1 1111 27999999886666778999999999887652111111121 2367788899987643 3
Q ss_pred HHHHHHHHHHHHHh--cC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhc
Q 007424 178 AKAAGLVVVGSVIG--SG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESK 251 (604)
Q Consensus 178 aK~alLsaIGSiA~--ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~c 251 (604)
++..+..+|..++. ++ ......+ ...+|.|.+.|.+.+..+++.|+-+|+.|+....+..... ..-++..|-..
T Consensus 350 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 56666666666654 12 1111111 1368889999999999999999999999985222211111 13445555555
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
--.+-+.||+.+..||.-+
T Consensus 430 L~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 4467778898888888765
No 70
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.44 E-value=2.7e-06 Score=101.24 Aligned_cols=215 Identities=10% Similarity=0.016 Sum_probs=151.8
Q ss_pred HHHHHHHhhcCCCC-hHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhhc----ccccHHHHHHHHHhhccCC-----
Q 007424 27 KELDSIAATVDPTL-LPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSHN----LSPYITKIINSITRNFRDK----- 94 (604)
Q Consensus 27 ~eLD~lA~~L~pe~-ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h~----i~p~L~kIl~~IvrrLkDp----- 94 (604)
+.|.-+ .+|.++. +..+++.|..... ...|..+.+.+-++|.++ |+. =.++|+.||+.++.....+
T Consensus 461 d~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 461 ETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhcccccccccch
Confidence 334444 3666554 7777777765432 346899999999999998 452 3478999999999777443
Q ss_pred ChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------ChhhHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGKLGRM 163 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~--------i~~yL~~L 163 (604)
-+.|+...++++|++.+|+... ..||+|++..|+ .+.++.+|.+||.|+..+++..... ..+|+..|
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i 616 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI 616 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence 4678888899999999999543 247777777775 4678899999999999999986543 24688888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC-c--CCchHHHHHHHHhhhc--------------CCcHHHHHH-HHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-D--GSGLKGLVSCLLGFLS--------------SQDWAARKA-AAEA 225 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~-f--~pyf~~lm~~L~e~L~--------------s~Dw~lRka-AaDa 225 (604)
+..+......=..+..-.++.+||.++.+-+. - ..|+..+|+-+.+.|. +.++-.+-+ .+++
T Consensus 617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~ 696 (1073)
T 3gjx_A 617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKT 696 (1073)
T ss_dssp HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhh
Confidence 88888777554555667799999999974332 2 3566666655555442 223322222 2356
Q ss_pred HHHHHHHcCcchhhhhhHHH
Q 007424 226 LWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 226 Lg~LA~~~ge~f~py~~~~i 245 (604)
..+++...|..|.|+...+.
T Consensus 697 n~~v~~~~g~~f~~~~~~i~ 716 (1073)
T 3gjx_A 697 NVRACKAVGHPFVIQLGRIY 716 (1073)
T ss_dssp HHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHhhcchhHHHHHHHHH
Confidence 66788899999998886663
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.42 E-value=2.1e-06 Score=101.18 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=167.1
Q ss_pred HHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--cccccHHHH
Q 007424 9 VNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKI 83 (604)
Q Consensus 9 vl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~i~p~L~kI 83 (604)
+-.+|+.++|.+ -...|...++.|+..++|+.+..+|+.|.++.. +.||..+-+++.+|+.+++.+ .+.-.||.|
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence 345677778866 566677789999999999997777777766654 348999999999999999887 888999999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCChhhHH
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLG 161 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--~d~i~~yL~ 161 (604)
+|++....-|.-+-|..|+..++..++.-+....+.-|++-|+++|. +++. +. -|+..+-... .+...+-|.
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~-~p~~-~~----~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA-DPTE-VP----ETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH-CTTH-HH----HHHHHHTTCCCCSCCCHHHHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc-Chhh-hH----HHHHHhhcCeeEeeecchhHH
Confidence 99999999999999999999999999988754334448999999994 4443 22 3455555442 333457889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc--CcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA--VDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~--~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~ 231 (604)
-|.|=|.+-|+......|-.....|.-+.. +.. ..-||++.++|.|..... -.|-++|..|..++.+|-.
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999988877777665556665554 332 223888888999887664 4689999999888888754
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.38 E-value=1.7e-07 Score=83.36 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM 121 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl 121 (604)
+..+..|.....++++.+|..++.+||.+... . ++.+++.|+|+++.||.+++++||.+... ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------~a 74 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----A----FEPLLESLSNEDWRIRGAAAWIIGNFQDE-------RA 74 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------HH
Confidence 33444444445567889999999998865432 1 37788899999999999999999999754 36
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
+++|+..| .+.++.|+..|+.+|..+.+ +..++.|.++|++++..++.+++.+++
T Consensus 75 ~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78888888 67888999999999987742 345667777888777788877777665
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.36 E-value=7.1e-08 Score=85.88 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=90.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+.+.-++.++..|+|+++.||.+++++|+.+.... +++|+..| .+.++.++..|+.+|..+.+
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSSTT--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC--------
Confidence 45556678889999999999999999999886542 47777777 68899999999998876542
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
+..++.|.++|++++..++.+++.++|.+ +. +..++.|.+.|.++|+.+|..|+.+|+.|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~---~~------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHH---CS------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 34567788888889999999988888854 32 35788899999999999999999998753
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.30 E-value=2.6e-06 Score=90.12 Aligned_cols=234 Identities=14% Similarity=0.086 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|-.-.|+..-.|..++.. +++.| ...+.|..-.+++++.+|--||+.|+-+.. ...++.|.+.|.+.|.|.++.
T Consensus 81 d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~py 154 (355)
T 3tjz_B 81 DPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPS 154 (355)
T ss_dssp CHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHH
Confidence 444778888888888886 44445 667778777788899999999999998876 346788899999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----------CCC-C-hhhH---
Q 007424 98 LQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA-----------QDP-D-AGKL--- 160 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a-----------~d~-i-~~yL--- 160 (604)
||.+|+.++..|.....+ .. .|+.-+-+++ .+.++.||..|..+|..+.+.- ... + .++.
T Consensus 155 VRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~ 231 (355)
T 3tjz_B 155 VSSSALVSSLHLLKCSFD--VVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCM 231 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH--HHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHH
Confidence 999999999887666422 11 2777777776 6788889976666665555421 110 0 0111
Q ss_pred -----------------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHH
Q 007424 161 -----------------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAA 223 (604)
Q Consensus 161 -----------------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAa 223 (604)
..+++.|...|++.+..+ +++|+..|..........+...+..|+-||.+.|-.+|-+|+
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aV---vyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaL 308 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV---VYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAV 308 (355)
T ss_dssp HHHHHTCC-----------------CCCCCSSHHH---HHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHH
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHH---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 123333444444444333 455555554322211123344567788889999999999999
Q ss_pred HHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHH
Q 007424 224 EALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 224 DaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL 267 (604)
+.|..|+...++.+... -.-+|+|=-|--+.++--|..+|
T Consensus 309 r~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 309 RTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HCC-----------------------------------------
T ss_pred HHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 99999999888887765 44455555588777766655443
No 75
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2e-05 Score=78.68 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=127.7
Q ss_pred hhcCChh--HHHHHHHHHHHHHhhcCCCC--------hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--------c
Q 007424 14 NKLSDRD--TYSQAAKELDSIAATVDPTL--------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------N 75 (604)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~lA~~L~pe~--------ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--------~ 75 (604)
.+|.+.. .+.-|+++|..+....+... +..++..+.....+.+..+-..++.++..++..+ .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3555555 77889999988777643221 2122233333444557788999999999887654 3
Q ss_pred ccccHHHHHHHHHhh-ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 76 LSPYITKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 76 i~p~L~kIl~~Ivrr-LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
..+++..++|.|+.+ |.|+...+|.++..++-.+++... +...++..|+.++ ...++.++.++..+|..+++..+.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence 446788899988865 899999999999999988887652 2223455555555 677899999999999999988554
Q ss_pred CC---hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc
Q 007424 155 PD---AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA 194 (604)
Q Consensus 155 ~i---~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~ 194 (604)
.. .+.++.+++-+.++|++.+..+|.+++.+++.+-. .|.
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 32 34678899999999999999999999999998775 553
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.09 E-value=0.0001 Score=78.97 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=91.1
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhcCC--------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH
Q 007424 10 NGLLNKLSDRDTYSQAAKELDSIAATVDP--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI 80 (604)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~lA~~L~p--------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L 80 (604)
+..|.. +|.+.+..|+..|..|+.+-++ ..||.|+.+|. ++++..++++..+|..|+... .....+
T Consensus 8 v~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 8 VQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344432 5777888888888888754332 12688887776 456789999999999998753 111111
Q ss_pred --HHHHHHHHhhcc-CCChhHHHHHHHHHHhhhhhhccch--hH-HHHHHHHHHHcc--------C-------CChhHHH
Q 007424 81 --TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASA--FV-TMLKLLSDALFT--------E-------QDTNAQV 139 (604)
Q Consensus 81 --~kIl~~IvrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~--~~-sllkPL~eaL~~--------e-------qdk~vQ~ 139 (604)
.-.+|.+++.|+ .++..|+..++++|+.|+.. .+.. +. ..++||+..|.. . .+..++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 134678888898 78899999999999999987 3211 11 378888888831 1 2345556
Q ss_pred HHHHHHHHHHh
Q 007424 140 GAALCLAATID 150 (604)
Q Consensus 140 ~AA~cLaalIE 150 (604)
.|+.||..+..
T Consensus 162 ~a~~aL~nLs~ 172 (457)
T 1xm9_A 162 NATGCLRNLSS 172 (457)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77777766554
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.07 E-value=0.00015 Score=77.77 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=155.9
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhcCCC-------ChHHHHHhhhh------cCCC------CCCchhHHHHHHHHH
Q 007424 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPT-------LLPTFLSCILS------TNSS------DKPGVRKECIHVIAT 69 (604)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe-------~ip~fL~~L~e------~~ss------~kp~~RKaaI~lLGv 69 (604)
+++.|.+=+|.+....|+..|-.|+.+ +.- .+|+|+.+|.. ...+ .++...+.++.+|..
T Consensus 91 Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~n 169 (457)
T 1xm9_A 91 AVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRN 169 (457)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHH
Confidence 344554445778899999999999986 322 26888888832 0111 245667799999999
Q ss_pred HHhhh----cccccHHHHHHHHHhhccC------CChhHHHHHHHHHHhhhhhhc-------------------------
Q 007424 70 LSNSH----NLSPYITKIINSITRNFRD------KNSALQATCISTVSSLSPRVG------------------------- 114 (604)
Q Consensus 70 Lae~h----~i~p~L~kIl~~IvrrLkD------pDs~VR~Ac~~aLg~LAe~l~------------------------- 114 (604)
||... .+... +.+++.++..|++ ++..+.+.|+.+|..|+..+.
T Consensus 170 Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (457)
T 1xm9_A 170 LSSADAGRQTMRNY-SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248 (457)
T ss_dssp HTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred HccCHHHHHHHHHc-CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence 98654 22210 1344555555542 555566667666777653210
Q ss_pred -------------------------cch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh----hH-
Q 007424 115 -------------------------ASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG----KL- 160 (604)
Q Consensus 115 -------------------------d~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~----yL- 160 (604)
++. ....+++|+..|....++.++..|+.||..++-+-...... .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~ 328 (457)
T 1xm9_A 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328 (457)
T ss_dssp -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence 000 01267888888865667889999999999988653221111 12
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcH------HHHHHHHHHHHHHHHHc
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDW------AARKAAAEALWRLAVVE 233 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw------~lRkaAaDaLg~LA~~~ 233 (604)
...+|.|+++|.++++.++..++.+|+-++.-...-.-.-...||.|.+.|...+. .+-.+|+.+|+.|....
T Consensus 329 ~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408 (457)
T ss_dssp TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence 23578999999999999999989999987752211111123578889999986543 46667888888876533
Q ss_pred Ccchhhhh-hHHHHHHHhccCcc-hhHHHHHHHHHHH
Q 007424 234 KDAVPEFK-GKCLKIFESKRFDK-VKVVREVMNKMIE 268 (604)
Q Consensus 234 ge~f~py~-~~~i~~Le~cRfDK-vK~VRda~~~AL~ 268 (604)
.+....+. ...++.|.+....+ -..||..+...|+
T Consensus 409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 32222111 22333333333333 3456666666665
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.00 E-value=3.8e-05 Score=92.30 Aligned_cols=214 Identities=13% Similarity=0.020 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhh----hhcCC---------------------CCCCchhHHHHHHHHHHHhhh--
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCI----LSTNS---------------------SDKPGVRKECIHVIATLSNSH-- 74 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L----~e~~s---------------------s~kp~~RKaaI~lLGvLae~h-- 74 (604)
++.....|+.++.-.|...+..++..| ..... ++.+....+.+..++.+.+++
T Consensus 440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~ 519 (1204)
T 3a6p_A 440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR 519 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556677777766665565444444 32111 112234566778888887777
Q ss_pred cc-cccHH-HHHHHHHhhc---cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---C------------CC
Q 007424 75 NL-SPYIT-KIINSITRNF---RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT---E------------QD 134 (604)
Q Consensus 75 ~i-~p~L~-kIl~~IvrrL---kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---e------------qd 134 (604)
.. .++++ .+++.++..| ...++.+|..+...+|.+++|+...| .+++|+++.|+. + .+
T Consensus 520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 23 36666 3555555553 44688899999999999999986533 477877777652 2 34
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHhc-CcC--cCCchHHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGS-GAV--DGSGLKGLVSCLL 208 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~---~kaK~alLsaIGSiA~a-g~~--f~pyf~~lm~~L~ 208 (604)
+.++..||.||..+++.+++...+|++.|...+..++.... -+-+-.+..+++.++.. +.. -..|+..+++-+.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 67999999999999999988888999999999999997554 45566688888877642 321 1367899999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 209 GFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 209 e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
+.|.+++|+. +..+. ..++..+| +...+|
T Consensus 678 ~~w~~~~~~~--~~s~~-~~f~~~~G~~~~~~~ 707 (1204)
T 3a6p_A 678 SIWLSQDMHR--VLSDV-DAFIAYVGTDQKSCD 707 (1204)
T ss_dssp HHHSCHHHHH--HHHCH-HHHHHHHTSSCC--C
T ss_pred HHHccHHHHH--hhcCH-HHHHHHhCCCCCccc
Confidence 9999888884 33333 34445555 444333
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.00 E-value=5.7e-05 Score=79.33 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH--HHHHHH
Q 007424 20 DTYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI--TKIINS 86 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~--------pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L--~kIl~~ 86 (604)
+.++.|+..|-.|+..=+ ... ||+|+.+|. ++++.+++.+.-+|+.|+.+. .....+ ...+|.
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence 356778888888775321 223 677777665 567789999999999998641 111111 135677
Q ss_pred HHhh-ccCCChhHHHHHHHHHHhhhhhhcc--chhH---HHHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCCC
Q 007424 87 ITRN-FRDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQDP 155 (604)
Q Consensus 87 Ivrr-LkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~---sllkPL~eaL~~eqdk---~vQ~~AA~cLaalIE~--a~d~ 155 (604)
+++. ++.++..++..++.+|..|+.+..+ ..+. ..+++|...|....+. .++..|+.||..+.-. ..+.
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 254 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH
Confidence 7776 4567888999999999999985422 2222 2788999988533222 4888889999877642 1111
Q ss_pred ChhhHH--HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 156 DAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 156 i~~yL~--~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
....+. ..++.|+++|.+.+..++..++.+|+-++.-......++ ...+|.|.+.|.+.+-.+|+.|+.+|..|+.
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 112221 268899999999999999988888887763111111122 2368999999999999999999999999998
Q ss_pred HcC
Q 007424 232 VEK 234 (604)
Q Consensus 232 ~~g 234 (604)
.-+
T Consensus 335 ~~~ 337 (354)
T 3nmw_A 335 NRP 337 (354)
T ss_dssp TCC
T ss_pred CCH
Confidence 544
No 80
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.98 E-value=5.5e-05 Score=88.94 Aligned_cols=185 Identities=7% Similarity=-0.034 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc--C---
Q 007424 60 RKECIHVIATLSNSHNLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT--E--- 132 (604)
Q Consensus 60 RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~--e--- 132 (604)
||++--+|-.++... -.+-++.+++.+.+.+.. ++...++||+.++|++++.+.+.....++..++..|.. +
T Consensus 430 ~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 555555666665322 123345556666666653 56789999999999999876432122245555555432 1
Q ss_pred ---CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCc--------CCch
Q 007424 133 ---QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVD--------GSGL 200 (604)
Q Consensus 133 ---qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f--------~pyf 200 (604)
..+.++..+++++.++.+-... ..+||+.+++.|+..|.+++..++.++..++..++. .+..+ .||+
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 2333555677888766654322 237999999999999999889999999999999886 33333 3999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLK 246 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~ 246 (604)
+.++..|...+..-+-..+....++++.|+...+ +...+|....+.
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999998887666667788999999999887 457777665443
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.93 E-value=0.00012 Score=79.71 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh--hcccccH--HHHHHHH
Q 007424 21 TYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--HNLSPYI--TKIINSI 87 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~--------pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--h~i~p~L--~kIl~~I 87 (604)
..+.|+..|-.|+..=+ ... ||+|+.+|. ++++.++..+.-+|+.|+.+ ......+ ...+|.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 46777788888775422 122 666666665 56678999999999999764 1111111 2357778
Q ss_pred Hhhc-cCCChhHHHHHHHHHHhhhhhhcc--chhH---HHHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCCCC
Q 007424 88 TRNF-RDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQDPD 156 (604)
Q Consensus 88 vrrL-kDpDs~VR~Ac~~aLg~LAe~l~d--~~~~---sllkPL~eaL~~eqdk---~vQ~~AA~cLaalIE~--a~d~i 156 (604)
++.| +.++..++..++.+|+.|+.+..+ ..+. ..+++|...|....+. .++..|+.||..+.-. ..+..
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 8864 556788999999999999985432 2222 2788999888533322 4888899999877642 11111
Q ss_pred hhhHH--HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 157 AGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 157 ~~yL~--~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
...+. ..+|.|+++|.+.++.++..++.+|+-++........++ ...+|.|.+.|.+.+..+|+.|+.+|..|+..
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 22222 268899999999999999999999988773221211222 23689999999999999999999999999875
Q ss_pred cC
Q 007424 233 EK 234 (604)
Q Consensus 233 ~g 234 (604)
-+
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 43
No 82
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.88 E-value=0.00015 Score=85.67 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHhhcCC---------CChHHHHHhhhhc-----CCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHH
Q 007424 21 TYSQAAKELDSIAATVDP---------TLLPTFLSCILST-----NSSDKPGVRKECIHVIATLSNSH-NLSPYITKIIN 85 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---------e~ip~fL~~L~e~-----~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~ 85 (604)
....|+-.|-.+++.+.. +.+|.++..|..- ...+.|.+|..++.++|..++-. .=..||+.+|+
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~ 538 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIE 538 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 455666666777777653 2355555554332 22456788999988888877755 33468999999
Q ss_pred HHHh--hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---c---CC--C----------------hhHHH
Q 007424 86 SITR--NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---T---EQ--D----------------TNAQV 139 (604)
Q Consensus 86 ~Ivr--rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~---eq--d----------------k~vQ~ 139 (604)
.++. ++.+++..||.+|+.++..|++.+.. ....++.+++..|. . ++ + -.-|.
T Consensus 539 ~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 617 (980)
T 3ibv_A 539 YFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQL 617 (980)
T ss_dssp HHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHH
T ss_pred HHhccccccCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHH
Confidence 9999 99999999999999999999998843 12226666666652 1 11 0 12477
Q ss_pred HHHHHHHHHHhhcCCC---ChhhHHHHHH----HHHHHhcCC----chhHH-HHHHHHHHHHHhcCcC----cC---Cch
Q 007424 140 GAALCLAATIDAAQDP---DAGKLGRMEV----RLERLLKSE----VFKAK-AAGLVVVGSVIGSGAV----DG---SGL 200 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~---i~~yL~~L~~----RL~klL~s~----~~kaK-~alLsaIGSiA~ag~~----f~---pyf 200 (604)
.-.-|+..++...+.+ ...|+..|++ ++.+++... .-.++ ..++.+||.++..=.. .. ..|
T Consensus 618 ~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f 697 (980)
T 3ibv_A 618 YLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF 697 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH
Confidence 7888888888886542 2356655554 455666432 11122 1466778887752111 12 356
Q ss_pred HHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 201 KGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 201 ~~lm~~L~e~L~--s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
..+++.+...|. ..+..+|-+++-++..+....|+.+.||....++.|=
T Consensus 698 ~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 698 NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 677777777776 5789999999999999999999888888888777665
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.85 E-value=0.00098 Score=78.39 Aligned_cols=198 Identities=10% Similarity=0.096 Sum_probs=122.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHH--HhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
+..++..|.+. ++..|..+..+||.+ ..+. ..-+..|+..+.. |.+..||++++.+||.+.-.- +
T Consensus 474 ~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn--~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~--~-- 540 (963)
T 4ady_A 474 YEALKEVLYND----SATSGEAAALGMGLCMLGTGK--PEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGR--Q-- 540 (963)
T ss_dssp HHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC--G--
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCC--h--
Confidence 56666666532 235677777777776 2222 1223455555443 344567777888888663221 1
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
..+..|++.|..+.++.+..+|++++.-..-+.++ ...+++|+..+. ++.+-.+|.+++-+||-|. .|..
T Consensus 541 -e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~-~g~~--- 610 (963)
T 4ady_A 541 -ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVL-LRDY--- 610 (963)
T ss_dssp -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT-SSSC---
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhc-cCCH---
Confidence 25777788886677888888888887655544444 223333333332 3445557777777777432 3321
Q ss_pred chHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GLKGLVSCLLGFL-SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf~~lm~~L~e~L-~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..++.+.+.| .+.||.+|..|+.+||.+...-|. ..++..|+..-.|....||..|..||...
T Consensus 611 ---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 611 ---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp ---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 2245555544 468999999999999987643221 34455666666799999999999999887
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.82 E-value=0.00083 Score=75.30 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHHhhcC------CCChHHHHHhhh-hc-------------CCCCCCchhHHHHHHHHHHHhhh---
Q 007424 18 DRDTYSQAAKELDSIAATVD------PTLLPTFLSCIL-ST-------------NSSDKPGVRKECIHVIATLSNSH--- 74 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~------pe~ip~fL~~L~-e~-------------~ss~kp~~RKaaI~lLGvLae~h--- 74 (604)
|.+..+.|+..|-.|+.+=+ ...||+|+..|. ++ ....++.+++.+.-+|..|+...
T Consensus 147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~ 226 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226 (584)
T ss_dssp SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence 45567777777777765311 123688887762 11 12334688999999999997543
Q ss_pred --ccccc---HHHHHHHHHhhc--cCCChhHHHHHHHHHHhhhhhhcc-----------------------c-h----hH
Q 007424 75 --NLSPY---ITKIINSITRNF--RDKNSALQATCISTVSSLSPRVGA-----------------------S-A----FV 119 (604)
Q Consensus 75 --~i~p~---L~kIl~~IvrrL--kDpDs~VR~Ac~~aLg~LAe~l~d-----------------------~-~----~~ 119 (604)
.|..+ ++.++..+...+ .+++..+.+-|+.+|..|+..+.. . . .+
T Consensus 227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~ 306 (584)
T 3l6x_A 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306 (584)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence 22211 233333333332 346667888889999888866421 0 0 11
Q ss_pred -HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---ChhhH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Q 007424 120 -TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 120 -sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~---i~~yL--~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag 193 (604)
..+++|+..|....++.++..|+.||..++-+-... +...+ ...+|.|++||.+++..++..+..+|+-++.-.
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 257788888854567889999999999998642111 11122 346889999999999999999999999888532
Q ss_pred cCcCCchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCcchhh-----hhhHHHHHHHhccCcchhHHH
Q 007424 194 AVDGSGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPE-----FKGKCLKIFESKRFDKVKVVR 260 (604)
Q Consensus 194 ~~f~pyf~~lm~~L~e~L~s~--------Dw~lRkaAaDaLg~LA~~~ge~f~p-----y~~~~i~~Le~cRfDKvK~VR 260 (604)
..-...-...||.|.+.|.+. .-.+...|+-+|+.|...-.+...- ....++.+|++.. ++.+.++
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k 465 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVR 465 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHH
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHH
Confidence 211122356889999999765 3577888888888876532221111 1133455555432 2445555
Q ss_pred HHHHHHHHHH
Q 007424 261 EVMNKMIEAW 270 (604)
Q Consensus 261 da~~~AL~~w 270 (604)
.|+.---.+|
T Consensus 466 ~Aa~vL~nl~ 475 (584)
T 3l6x_A 466 AAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444455
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.79 E-value=0.0011 Score=77.86 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=89.4
Q ss_pred CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 39 e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
+.++.++..|.. +.+|.+|..++.++|..+.|- . ..-+++||..+. .|++..||++|+.+||-++-.- +
T Consensus 541 e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~~g~---~ 610 (963)
T 4ady_A 541 ELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVLLRD---Y 610 (963)
T ss_dssp GGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTSSS---C
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhccCC---H
Confidence 345555555543 234555666555555554443 1 112233333222 3555566666666666543221 1
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--cC
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG--AV 195 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag--~~ 195 (604)
..++.+++.|....++.+..+|++||.-+.-+-+. ++++.-|.+++++++..++..++-++|-|- +| .+
T Consensus 611 --e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig-~gtnna 681 (963)
T 4ady_A 611 --TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL-IQQTEK 681 (963)
T ss_dssp --SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS-TTCCTT
T ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh-cCCccc
Confidence 13455555555555666666776666655533222 444444555555566666655555555322 22 12
Q ss_pred cCCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHH
Q 007424 196 DGSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLA 230 (604)
Q Consensus 196 f~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA 230 (604)
..|.+..++..|..++.+ +|-.+|-.|+-+.|-|-
T Consensus 682 ~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 682 LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 235666666666666653 46666666666666654
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.61 E-value=0.0047 Score=65.28 Aligned_cols=234 Identities=11% Similarity=0.104 Sum_probs=137.0
Q ss_pred HHHHHHHhhhcCCh--hHHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007424 6 KTSVNGLLNKLSDR--DTYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (604)
Q Consensus 6 k~rvl~~L~KLsDr--DT~r~A~~eLD~lA~~L~pe~i-----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p 78 (604)
|..++|-...+.+. |+.++--..-+.|...+-.+.| ..++.-+..-.++.+...||=+++.+-.++... .
T Consensus 24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~ 100 (355)
T 3tjz_B 24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---E 100 (355)
T ss_dssp HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---S
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---H
Confidence 45577777777665 5665432222223332223343 344444445566888899999999998887764 1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
..=-...++.+-++||++.+|..|..+|+.+.+.- +. .+.+++-.+| .+.++.|...|+.|...++.-.++
T Consensus 101 e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~----m~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe--- 172 (355)
T 3tjz_B 101 DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDST----MLQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD--- 172 (355)
T ss_dssp CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT----THHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH---
T ss_pred HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH----HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH---
Confidence 11145678999999999999999999999997542 22 2566666666 788999999999999999876543
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
.+...++.+..++.+.+..+...++.++--+..... ..+..+++.+.+.--.+.|.. +..|-.++....+..
T Consensus 173 -~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 173 -VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---LAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLEDED 244 (355)
T ss_dssp -HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC-----
T ss_pred -HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---HHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhccccc
Confidence 455677788899988887776555555554443221 123344555444211246662 444444433332222
Q ss_pred hhhhhHHHHHHHhccCcchhH
Q 007424 238 PEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~ 258 (604)
...+..+++.|+.+--.+-..
T Consensus 245 ~~~~~~~~~~l~~~L~~~~~a 265 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLRNKHEM 265 (355)
T ss_dssp ------------CCCCCSSHH
T ss_pred hhhHHHHHHHHHHHHcCCChH
Confidence 223456677777665444333
No 87
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.61 E-value=0.0012 Score=73.94 Aligned_cols=241 Identities=11% Similarity=0.026 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhc
Q 007424 21 TYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNF 91 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrL 91 (604)
..|-++..||.+-++=| ...||.|+.+|. +.++..+.+|..+|..+|.+. ...-. -...||.+++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~----s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL 99 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLG----FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL 99 (584)
T ss_dssp ----------------CCCCCCCCCCHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG
T ss_pred cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH
Confidence 45677888999877522 233899998886 345678888999999998654 11111 124578999999
Q ss_pred cCCChhHHHHHHHHHHhhhhhh-ccc--hh--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRV-GAS--AF--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEV 165 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l-~d~--~~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~ 165 (604)
+.++..|+..|++||+.|+..- .+. .+ ...++||+..|....+..+|..|+.||..+--. +.. ...+..-+|
T Consensus 100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~~alp 177 (584)
T 3l6x_A 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHALH 177 (584)
T ss_dssp GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHhccHH
Confidence 9999999999999999999741 111 11 127999999995446778899999999877542 221 122233345
Q ss_pred HHHHHh------------------cCCchhHHHHHHHHHHHHHhcCcCc-------CCchHHHHHHHHhhhc--CCcHHH
Q 007424 166 RLERLL------------------KSEVFKAKAAGLVVVGSVIGSGAVD-------GSGLKGLVSCLLGFLS--SQDWAA 218 (604)
Q Consensus 166 RL~klL------------------~s~~~kaK~alLsaIGSiA~ag~~f-------~pyf~~lm~~L~e~L~--s~Dw~l 218 (604)
-|+++| ...+..++..+..+|..++...... ....+.+|..|...+. ..+...
T Consensus 178 ~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 178 ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp HHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred HHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH
Confidence 555544 1224567777777888777543211 1112234444443331 234445
Q ss_pred HHHHHHHHHHHHHHc---------------------------C-cch-hh-hhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 219 RKAAAEALWRLAVVE---------------------------K-DAV-PE-FKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 219 RkaAaDaLg~LA~~~---------------------------g-e~f-~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
...|+-+|..|+... | +.+ .+ .....+.+|..+ .-+.|++.+..||+
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s---~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES---KTPAILEASAGAIQ 334 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 555666665555321 0 100 00 012236667655 24789999999997
Q ss_pred HH
Q 007424 269 AW 270 (604)
Q Consensus 269 ~w 270 (604)
-+
T Consensus 335 nL 336 (584)
T 3l6x_A 335 NL 336 (584)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.53 E-value=0.0087 Score=60.34 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=152.8
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+.+.+..++..|. ..++-++-.++.+|+.+-... .-...+.++++.|++.+++.|--|--=|.++++.|-+..
T Consensus 31 ~e~~l~~L~~LL~----dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAG----EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHh----ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 3444666666665 446689999999999986663 445689999999999999999877666667777766654
Q ss_pred cc--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 114 GA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 114 ~d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.= ..+.-+..-|.+.+ ..++.-...-||-.|..+ .+....++++..++.++++.+.++|.+.+.++-.+++
T Consensus 107 pL~~~~y~Kl~~aL~dli-k~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLL-ESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CBCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 21 11222455555555 477777888888877777 3334468899999999999999999999999998886
Q ss_pred cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-CcchhhhhhHHHHHHHhcc-CcchhHHHHHHHHH
Q 007424 192 SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE-KDAVPEFKGKCLKIFESKR-FDKVKVVREVMNKM 266 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~-ge~f~py~~~~i~~Le~cR-fDKvK~VRda~~~A 266 (604)
-.++ ...++.+..-+.++|.++|-.++.-|.++|-.|+... .+.+.+-...+++...+.= .-+-+.+|+-|-.-
T Consensus 180 ~S~D-~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 180 SSAD-SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GCSS-CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3322 2345667788999999999999999999999988832 2333333345555555444 33444566655443
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.51 E-value=0.0017 Score=77.18 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=128.8
Q ss_pred cccccHHHHHHHHHhhccCCC-------------------h---hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc-
Q 007424 75 NLSPYITKIINSITRNFRDKN-------------------S---ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT- 131 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpD-------------------s---~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~- 131 (604)
...|++.++++.++++++=|+ + ..-....++|..++.-..+.-+..++.-|-..+.+
T Consensus 384 ~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~ 463 (1023)
T 4hat_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1023)
T ss_dssp GGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC
Confidence 567999999999999988664 0 11112236665555443211111234444444433
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHhcCcCcCCchHHHHH
Q 007424 132 EQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKS-----EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVS 205 (604)
Q Consensus 132 eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s-----~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~ 205 (604)
+.+.....++++|+.++.++..+. ..++++.+++-|+.++++ +...++..+.-+||....-=.....|++.+|.
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~ 543 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 357888999999999999986644 457899999999999875 23344445556666544311223478999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch--------hhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 206 CLLGFLSSQDWAARKAAAEALWRLAVVEKDAV--------PEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 206 ~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f--------~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.|.+++.++.-.+..+||++|..|+...++.+ .||.+.++..+..+--+=-..-+..+.+|+..+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999766544 478888777776643221123334555555544
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.40 E-value=0.0014 Score=73.12 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=139.1
Q ss_pred HHHHHHHhhhcCChh-------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007424 6 KTSVNGLLNKLSDRD-------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (604)
Q Consensus 6 k~rvl~~L~KLsDrD-------T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p 78 (604)
|.-++-+|++.+|== -+-.|+|.|-.+ .+||++ +..+...+ .....+.|.+|-.+++.|-.+ .. ++..
T Consensus 222 RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL-~D-LL~~ 296 (800)
T 3oc3_A 222 KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL-KE-FVED 296 (800)
T ss_dssp HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT-GG-GCCC
T ss_pred HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH-HH-HHHH
Confidence 444566788887622 456677777777 999988 55544444 345667799999999999999 22 3322
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHH-HHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAAL-CLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~-cLaalIE~a~d~i~ 157 (604)
|+.+++.++.+|+|+|=-||.+|+.+|--++ . ......++.-|.+.|.+..|-.+-.++.+ -|++++..-...
T Consensus 297 -Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~-p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a-- 370 (800)
T 3oc3_A 297 -KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--I-TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL-- 370 (800)
T ss_dssp -HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--C-SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--
T ss_pred -HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--c-hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--
Confidence 9999999999999999999999999999998 1 12344578888888853333233333333 346665542211
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHH-HhhhcCCcHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCL-LGFLSSQDWAARKAAAEALW 227 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L-~e~L~s~Dw~lRkaAaDaLg 227 (604)
...+.++|||.-.|.|+-..+|.+++.++..+. ...+++.+ +..|-+++-++|..+.++..
T Consensus 371 ~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 371 SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 112389999999999998889999888876433 22344333 55666788888888888774
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0046 Score=71.37 Aligned_cols=188 Identities=8% Similarity=0.041 Sum_probs=121.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCCh--hHHHHHHHHHHHHHhhcCCCC
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDT--NAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk--~vQ~~AA~cLaalIE~a~d~i 156 (604)
.++|.++..++.+++.+|..++++++.|+..-.... +. ..++||+..|...... .++..||.||+++.-..+...
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 477888888999999999999999999997732111 11 2899999999643332 278899999999986543221
Q ss_pred h--hh-HHHHHHHHHHHhcC-Cch-------------hHHHHHHHHHHHHHhcC----cCc-CCchH--HHHHHHHhhhc
Q 007424 157 A--GK-LGRMEVRLERLLKS-EVF-------------KAKAAGLVVVGSVIGSG----AVD-GSGLK--GLVSCLLGFLS 212 (604)
Q Consensus 157 ~--~y-L~~L~~RL~klL~s-~~~-------------kaK~alLsaIGSiA~ag----~~f-~pyf~--~lm~~L~e~L~ 212 (604)
. .| ....++.|+++|.. +.. ..+--++-|++-+|... +.. .-.+. ..++.|.++|.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 1 11 12678889999973 221 12445566777777643 111 11232 47899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHc-C--cchh----hhhhHHHHHH-HhccCcchhHHHHHHHHHHHHH
Q 007424 213 SQDWAARKAAAEALWRLAVVE-K--DAVP----EFKGKCLKIF-ESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~-g--e~f~----py~~~~i~~L-e~cRfDKvK~VRda~~~AL~~w 270 (604)
+++..+|++|+++|..|+... + ..|. |-..+.++.| .=++. .-..+|.+|.-||--+
T Consensus 617 s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnL 681 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANI 681 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999732 1 1232 1111123333 22233 4557777777777655
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.017 Score=56.65 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=132.6
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---c--CCChhHHHHHHHHHHHHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---T--EQDTNAQVGAALCLAATI 149 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~--eqdk~vQ~~AA~cLaalI 149 (604)
..+.|=..++-.+++.|-|.-..||.-+...+..+++... . +..|+..-|+ . +.-+-.|. -|.++..+.
T Consensus 25 ~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~--e---l~epl~~kL~vm~~ksEaIpltqe-Ia~a~G~la 98 (253)
T 2db0_A 25 IMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE--D---LYEPMLKKLFSLLKKSEAIPLTQE-IAKAFGQMA 98 (253)
T ss_dssp HHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG--G---GHHHHHHHHHHHHHHCCSHHHHHH-HHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH--H---HHHHHHHHHHHHHhhcccCchHHH-HHHHHhHHH
Confidence 4556677788889999988888999999999999888873 2 4444444433 2 22333343 233344333
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.-- .+.+..+.|-|+.=+.-.+.|+|--.-.+++-|+.+... .+..+..-+...|++.|-.=|.+|..-|+.|
T Consensus 99 ~i~----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~---l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 99 KEK----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM---LMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHC----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred HhC----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 321 246677888888888777889998888888888776532 2234455556667888988899999999988
Q ss_pred HHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 230 AVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 230 A~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.....++.||..+.+..|. ||-..||-++.|+|.-+-.++
T Consensus 172 Gen~~~yv~PfLprL~aLL~----D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLH----DGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGG----CSSHHHHHHHHHHHHHHHTSC
T ss_pred hccCccccCcchHHHHHHHc----CcchhhhHHHHHHHHHHHHcC
Confidence 88877999999888888887 999999999999998775443
No 93
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.19 E-value=0.0045 Score=61.63 Aligned_cols=166 Identities=9% Similarity=0.040 Sum_probs=110.8
Q ss_pred HHHHHhhccCCCh--hHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 84 INSITRNFRDKNS--ALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 84 l~~IvrrLkDpDs--~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
+|.+++.|+.+|+ .|+..++.++..|+..-.+. .+. ..++||+..| ...++.+|..|+.||..+.-.-++ -.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~-nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDND-NK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 6788889998888 88888888999888653221 111 1688999888 567889999999999988642111 11
Q ss_pred hhHHH--HHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc----------------CCcHHH
Q 007424 158 GKLGR--MEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS----------------SQDWAA 218 (604)
Q Consensus 158 ~yL~~--L~~RL~klL~-s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~----------------s~Dw~l 218 (604)
..+.+ -+|.|+++|. +++..++..+.+++..++.....-.......||.|.+.+. ..+-.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22222 6788999997 5688899998889998875432111223345677766442 136689
Q ss_pred HHHHHHHHHHHHHHc---Ccchhhh---hhHHHHHHHhc
Q 007424 219 RKAAAEALWRLAVVE---KDAVPEF---KGKCLKIFESK 251 (604)
Q Consensus 219 RkaAaDaLg~LA~~~---ge~f~py---~~~~i~~Le~c 251 (604)
+..|+.+|..|+... ...+... .+..+.+|..|
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 999999999998632 2333322 24556666665
No 94
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.19 E-value=9.2e-05 Score=74.35 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=84.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
-..++++.+|..+...|+ + +.+.+.++|+|..||.+++..+ .. +++..|.
T Consensus 82 L~~D~~~~VR~~aA~~L~---------~------~~L~~ll~D~d~~VR~~aA~~l---~~------------~~L~~L~ 131 (244)
T 1lrv_A 82 LIRDSDEVVRRAVAYRLP---------R------EQLSALMFDEDREVRITVADRL---PL------------EQLEQMA 131 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC---------S------GGGGGTTTCSCHHHHHHHHHHS---CT------------GGGGGGT
T ss_pred HccCcCHHHHHHHHHHCC---------H------HHHHHHHcCCCHHHHHHHHHhC---CH------------HHHHHHH
Confidence 345667788887775421 1 2456668888888888877743 11 1223344
Q ss_pred cCCChhHHHHHHHHHHH-HHhh-cCCCChhhH-----HHHHH-HHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH
Q 007424 131 TEQDTNAQVGAALCLAA-TIDA-AQDPDAGKL-----GRMEV-RLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG 202 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaa-lIE~-a~d~i~~yL-----~~L~~-RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~ 202 (604)
.+.++.|+.+++..+.. .+.. +.|.. +.+ ..+.+ -|..++++++..++.+++..+ .
T Consensus 132 ~D~d~~VR~~aA~~l~~~~l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l----------~----- 195 (244)
T 1lrv_A 132 ADRDYLVRAYVVQRIPPGRLFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL----------R----- 195 (244)
T ss_dssp TCSSHHHHHHHHHHSCGGGGGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC----------C-----
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC----------C-----
Confidence 66677777766664310 0000 11111 000 00111 122444555555555544331 0
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
.+.|...+.+++|++|.+++..|+ +..|... -|....||.++.++|.+
T Consensus 196 -~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 196 -GDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp -GGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred -HHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 134666778888999999888865 1334445 59999999999887654
No 95
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0069 Score=69.89 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=127.3
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChh---HHHHHHHHHHhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSA---LQATCISTVSSL 109 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~---VR~Ac~~aLg~L 109 (604)
....+|+|+.++. +..+..|..++.+|+.++..- .+..+ -.++.++..|...... +|..|+.||+.|
T Consensus 455 eaGvIp~Lv~Ll~----S~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 455 RTELISFLKREMH----NLSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp TTTHHHHHHHHGG----GSCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 4444788777764 346789999999999997543 22222 3456677777765443 899999999998
Q ss_pred hhhhc-c---c--hhHHHHHHHHHHHccCCC------------hhH-HHHHHHHHHHHHhhcC---CCC-hhhHH--HHH
Q 007424 110 SPRVG-A---S--AFVTMLKLLSDALFTEQD------------TNA-QVGAALCLAATIDAAQ---DPD-AGKLG--RME 164 (604)
Q Consensus 110 Ae~l~-d---~--~~~sllkPL~eaL~~eqd------------k~v-Q~~AA~cLaalIE~a~---d~i-~~yL~--~L~ 164 (604)
.-..- . + .....++||++.|....+ +.. +.-|++||..+...-+ +.+ ...+. ..+
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 84321 0 0 112478999988841111 112 5578899888876532 112 22344 378
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCc----CcC-CchHH---HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGA----VDG-SGLKG---LVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~----~f~-pyf~~---lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
+.|..+|.+++..++.++..+|.-++.-.. .|. ..-+. -++.|..++.++|..+|.+|+-+|+.++.
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999986322 221 11112 37889999999999999999999999865
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.04 E-value=0.059 Score=54.81 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCCh
Q 007424 60 RKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDT 135 (604)
Q Consensus 60 RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk 135 (604)
|.+.+..|-.....+ +.+. +...|-..|..-|.++++.|-...+.-.+ .... +++=+..-+ -+.+.
T Consensus 32 ~~e~v~~L~~~~~~~-~~~~-------~~~~lfs~d~k~~~~ale~L~~~l~~~~~-~~~~~lDll~kw~~lr~-~d~N~ 101 (266)
T 2of3_A 32 TDEHISQLQTLLGNQ-AKVS-------LMSQLFHKDFKQHLAALDSLVRLADTSPR-SLLSNSDLLLKWCTLRF-FETNP 101 (266)
T ss_dssp CHHHHHHHHHHHHTT-BCHH-------HHHHHTCSCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHHHHHHHHT-TSCCH
T ss_pred CHHHHHHHHHHHHHh-ccHH-------HHHHhcCCCHHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHHHHHHH-hCCCH
Confidence 556665444433322 3333 34456677888888888777765443211 1111 222222233 36788
Q ss_pred hHHHHHHHHHHHHHhhc---CCCChhh-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007424 136 NAQVGAALCLAATIDAA---QDPDAGK-LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a---~d~i~~y-L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L 211 (604)
.+...+.-.|..+++.+ ++...+| ...++|-|+.-|.++.-++|.++..++..+..+.. ...+.+.+.+.+
T Consensus 102 ~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ 176 (266)
T 2of3_A 102 AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHH
Confidence 88888888888887775 3445566 57899999999988888888888888877665421 124778888899
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCcchhhhh---hHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 212 SSQDWAARKAAAEALWRLAVVEKDAVPEFK---GKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~---~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+-+|-+|-..++.|+.+-...|-...-+. ..+.+.|+ |+-..||++|..++.
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~----D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG----DKDVNVRNAAINVLV 232 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG----CSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 999999999999999999988884333344 45555666 999999999988876
No 97
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.98 E-value=0.00092 Score=75.61 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=85.2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC--
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-- 156 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-- 156 (604)
+|+|.| +.|+.+|+.+|..||.||+.|++.-.... +. ..+.|++..++.+.+..|+..|+.||..+....++.+
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 445544 34788888888888888888875421111 11 1677777776677777888888888877765543332
Q ss_pred -------hhhHHHHHHHHHHHhcCC--c------------hhHHHHHHHHHHHHHhcCcCcCCc--hHHHHHHHHhhhcC
Q 007424 157 -------AGKLGRMEVRLERLLKSE--V------------FKAKAAGLVVVGSVIGSGAVDGSG--LKGLVSCLLGFLSS 213 (604)
Q Consensus 157 -------~~yL~~L~~RL~klL~s~--~------------~kaK~alLsaIGSiA~ag~~f~py--f~~lm~~L~e~L~s 213 (604)
.+.|-.++.++...+... . +..-..++.++.+++........+ -...++.|..+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 222333333333322211 0 011123556666666433221101 12456666666643
Q ss_pred ---CcHHHHHHHHHHHHHHHH
Q 007424 214 ---QDWAARKAAAEALWRLAV 231 (604)
Q Consensus 214 ---~Dw~lRkaAaDaLg~LA~ 231 (604)
....++.+|+++|+.+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHhc
Confidence 247899999999999876
No 98
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.92 E-value=0.0033 Score=74.53 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=109.4
Q ss_pred hHHHH-HHHHHHHHHhhc-CCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--c-ccccHHHHHHHHHhhccC
Q 007424 20 DTYSQ-AAKELDSIAATV-DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRD 93 (604)
Q Consensus 20 DT~r~-A~~eLD~lA~~L-~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~-i~p~L~kIl~~IvrrLkD 93 (604)
|=++. |...|..|+... +++.++.++..|.+... ++.| +|...+..+-++.--| . -..+-.+|+.+|++.|.|
T Consensus 776 eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 776 ALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 33455 566677777655 44458999999988766 6788 9999988888876656 3 334456899999999999
Q ss_pred CC-hhHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHccCCCh---------------hHHHHHHHHHHHHHhhcCCCC
Q 007424 94 KN-SALQATCISTVSSLSPRV-GASAFVTMLKLLSDALFTEQDT---------------NAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 94 pD-s~VR~Ac~~aLg~LAe~l-~d~~~~sllkPL~eaL~~eqdk---------------~vQ~~AA~cLaalIE~a~d~i 156 (604)
+. .-||++|+.+|+-|-... .. ..+..++..+...-.+ ...-||.++|.|+|.+.+..+
T Consensus 855 ~q~~EVRe~Aa~tLsgll~c~~~~----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v 930 (997)
T 1vsy_5 855 EQFVEVRVRAASILSDIVHNWKEE----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF 930 (997)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS
T ss_pred CccHHHHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99 999999999999886553 11 1122344433211101 244689999999999998876
Q ss_pred --hhhHHHHHHHHHHHhcCCc
Q 007424 157 --AGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 157 --~~yL~~L~~RL~klL~s~~ 175 (604)
.+++|+++..|.....+++
T Consensus 931 P~P~w~P~~l~~La~~~~~~~ 951 (997)
T 1vsy_5 931 PLPPWIPKNLSNLSSWARTSG 951 (997)
T ss_dssp SCCTHHHHHHHHHHTTSSSCS
T ss_pred CCCcccHHHHHHHHHHhCCCC
Confidence 6799999988888887754
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.91 E-value=0.16 Score=51.26 Aligned_cols=183 Identities=10% Similarity=0.111 Sum_probs=140.9
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---hhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+..+..+...|.|-|+.|+-.++.+++.+-..+.+. ... -++.-++..+ -+.|..+...|.-||-.++++.+ ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vp-L~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVP-MG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCC-BC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCC-CC
Confidence 346678888999999999999999999887775221 111 1555555555 46677899999999999999753 22
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-- 234 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-- 234 (604)
.+.+.+++.-|..++++++--..-.+...+|.+ .+ ..+ ...++..|...+.+.|.++..+|+-+|-.||...+
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv---~~~-~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP---LED-SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---SCC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---ccc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 367789999999999988888888888888876 21 112 35678888888889999999999999999999776
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.+.+....+-..|. -+-++++|-|..+|.-+=..|
T Consensus 185 ~i~~~I~~eI~elL~----~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQ----NDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCGGGTTTTHHHHHT----CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCc
Confidence 577777777788887 447899999888888774443
No 100
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.83 E-value=0.22 Score=53.24 Aligned_cols=238 Identities=17% Similarity=0.155 Sum_probs=148.4
Q ss_pred HHHHHHHhhhc---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH
Q 007424 6 KTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK 82 (604)
Q Consensus 6 k~rvl~~L~KL---sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k 82 (604)
+-|++..||.- +| +..-.-+..+..|+.+-+|+-++-||..|.+....++..+||.++--|+..|..+ ..++++
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~~~ 100 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 45677777665 44 4444455666667777788779999999998877778899999999888887655 456899
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chh------HH-----HHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------VT-----MLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~------~s-----llkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
+++.+...|+|.|+.|-..+..+.+.+=..+.+ .+. .. -+|--+-.++...+..+...+.=-+..
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 999999999999998877777777776533332 110 11 233333334444566777777777777
Q ss_pred HHhhc----CC---------CC--------hhhH---------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC
Q 007424 148 TIDAA----QD---------PD--------AGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (604)
Q Consensus 148 lIE~a----~d---------~i--------~~yL---------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~ 197 (604)
+|..- .+ ++ -+++ ..|+.+|++.|.++.... ..+..+|+|++.....-.
T Consensus 181 VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~Iak~RP 259 (386)
T 3o2t_A 181 LIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANIARQRP 259 (386)
T ss_dssp HHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHHHHHSG
T ss_pred HHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHhcH
Confidence 77431 01 00 0111 458889999998763322 344556666665443334
Q ss_pred CchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 198 SGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~--------Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
.|...++++|..+-.+- --.+||..=-.|..+... ..-.||..++...|+
T Consensus 260 ~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~--p~s~~~~~~I~~~L~ 317 (386)
T 3o2t_A 260 MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH--PASLEFQAQITTLLV 317 (386)
T ss_dssp GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS--GGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHH
Confidence 56777888887654321 122344444444443332 333477777777777
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.83 E-value=0.031 Score=55.53 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=96.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
||.++..|.. .++++.++..+...|..++... -....+ ...||.+++.|+.++..|+..+++||..|+..-.+..
T Consensus 10 i~~lV~lL~s--~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEA--DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCS--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCC--CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888887752 2222267788888999988665 111111 2357999999999999999999999999987532211
Q ss_pred ----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhc----------------CCch
Q 007424 118 ----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLK----------------SEVF 176 (604)
Q Consensus 118 ----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~klL~----------------s~~~ 176 (604)
....++||+..|....+..+|..|+.+|-.+-- .+... .....-+|.|..+|- ..+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS--NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 112899999999534577899999988877742 22221 122223444444431 1244
Q ss_pred hHHHHHHHHHHHHHhcC
Q 007424 177 KAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 177 kaK~alLsaIGSiA~ag 193 (604)
.++.-+.+++..++.++
T Consensus 166 ~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 67777777888777654
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.72 E-value=0.026 Score=56.70 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=111.1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHH-HccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA-LFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~ea-L~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
.++.+++...+..+|+.=.||-+|++.+|++ ... .-+-|++.. +..+.+-.|+..+|.++..++...+..
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 4888888888888888889999999999998 322 223444444 556778889999999999998744331
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
.+++.+.+.++++++.++-+++..+.--+.. ..+.-..+.++|.|.....++++.+||+.+.+|.-++..-++.+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 2556788899999999998877765421111 22334556788999998899999999999999999998766665
Q ss_pred hhh
Q 007424 238 PEF 240 (604)
Q Consensus 238 ~py 240 (604)
..+
T Consensus 214 ~~~ 216 (240)
T 3l9t_A 214 KIE 216 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.70 E-value=0.034 Score=55.88 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=117.3
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
.=..|+.+.+..+.+.|..-+-+.+..--.|..-+...- ...+.+|+..|..+..-.++..|+..|..+ .
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~-----~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---- 99 (240)
T 3l9t_A 30 MGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND-----GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---- 99 (240)
T ss_dssp ----CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----
Confidence 445677788888888887766554333333333333321 136789999998655556887777766555 1
Q ss_pred CChhhHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLER-LLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 155 ~i~~yL~~L~~RL~k-lL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
-+..+++-+.. +-..+++.++..+..+++.++. ++.+ .+++.+.+.+.+++..+|.+|++.+---+..
T Consensus 100 ----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 100 ----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp ----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred ----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 12556666666 5667799999999999998875 5432 3677888888899999999999987532221
Q ss_pred cCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 233 EKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 233 ~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..|...-+.++.+|+..+-|+-.+||.|+.-+|.=+
T Consensus 170 --~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 170 --PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp --TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred --chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 234444577899999999999999999999888755
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.64 E-value=0.0076 Score=67.33 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred hhhcCChh--HHHHHHHHHHHHHhhcC--------CC-C-hHH-----HHHhhhhcCCCC-CCchhHHHHHHHHHHHhhh
Q 007424 13 LNKLSDRD--TYSQAAKELDSIAATVD--------PT-L-LPT-----FLSCILSTNSSD-KPGVRKECIHVIATLSNSH 74 (604)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~lA~~L~--------pe-~-ip~-----fL~~L~e~~ss~-kp~~RKaaI~lLGvLae~h 74 (604)
+..|=|.. +++-|+-.|..|.+.-. .. . ... .|.-+.|+.++. =.|+|+.|-.+||.+ .|
T Consensus 180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~h 257 (800)
T 3oc3_A 180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YP 257 (800)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TT
T ss_pred HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--Hh
Confidence 34444443 66666666666655432 11 2 222 233345665543 369999999999999 66
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
.-.+ -+++-.+++.+..+...||+..+-+|.-+.+.+.+ +..+++.++..| .+.+-.|+..||.+|--++
T Consensus 258 Lp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA----- 327 (800)
T 3oc3_A 258 LIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP----- 327 (800)
T ss_dssp TSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC-----
T ss_pred CChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc-----
Confidence 3333 35666666778888999999999999988554432 455777777777 6777789999988885555
Q ss_pred CChhhHHHHHHHHHHHhcCC-c-hhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLERLLKSE-V-FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~-~-~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..+.++.|+..+-.+|.+- + ......++.+++.+..-..... -.+.++|.|-+||...-..+|+++..+|.++.
T Consensus 328 -~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~-~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-- 403 (800)
T 3oc3_A 328 -ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS-IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-- 403 (800)
T ss_dssp -CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC-CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--
T ss_pred -chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc-cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--
Confidence 2256777777777776542 1 2234556666666665332211 01289999999999999999999999998765
Q ss_pred cCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 233 EKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 233 ~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.++.+.- ++.+.=++.-..||+. ++++|+
T Consensus 404 ~~~~LRL-------IFQNILLE~neeIl~l---S~~VWk 432 (800)
T 3oc3_A 404 EESIDFL-------VAEVVLIEEKDEIREM---AIKLLK 432 (800)
T ss_dssp CHHHHHH-------HHHHHHHCSCHHHHHH---HHHHHH
T ss_pred hhhHHHH-------HHHHHHhCCcHHHHHH---HHHHHH
Confidence 2233332 2223333555666665 667786
No 105
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.56 E-value=0.059 Score=64.84 Aligned_cols=241 Identities=15% Similarity=0.192 Sum_probs=146.7
Q ss_pred hHHHHHHHHHhhhcC------ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--
Q 007424 3 HALKTSVNGLLNKLS------DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-- 74 (604)
Q Consensus 3 ~eLk~rvl~~L~KLs------DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-- 74 (604)
+.+|+.+++.|.... +.--.....+.|-.|+..-=|+.-|-|+..|.+...+ ++..+..++.+|..+++..
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 468889999887752 2223334455566666664345555555555544333 4567888999999998873
Q ss_pred --------------cccccHHHHHHHHHhhccCC-------------------ChhHHHHHHHHHHhhhhhhccchhH--
Q 007424 75 --------------NLSPYITKIINSITRNFRDK-------------------NSALQATCISTVSSLSPRVGASAFV-- 119 (604)
Q Consensus 75 --------------~i~p~L~kIl~~IvrrLkDp-------------------Ds~VR~Ac~~aLg~LAe~l~d~~~~-- 119 (604)
.+..+++.|++.+...|++. +..++.++++++..+..|+.- .+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~ 245 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITA 245 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHh
Confidence 23556778888888777652 345788899999888888521 111
Q ss_pred ---HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC-----CChhhH-HHHHHHHHHHhc-------CC-chh-H-H-
Q 007424 120 ---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-----PDAGKL-GRMEVRLERLLK-------SE-VFK-A-K- 179 (604)
Q Consensus 120 ---sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-----~i~~yL-~~L~~RL~klL~-------s~-~~k-a-K- 179 (604)
.++.-++. ++. ++.++..|+-||..++..-.+ .++..+ ...+.+++..+. +. ++. + +
T Consensus 246 ~~~~ll~~l~~-~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 246 ENCKLLEILCL-LLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTSHHHHHHHH-GGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred ccchHHHHHHH-HcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 13333443 332 566889999999999874221 112223 223445555542 11 121 1 1
Q ss_pred HHHHHHHHHHHh--cCc----CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-cchhhhhhHHHHHH
Q 007424 180 AAGLVVVGSVIG--SGA----VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIF 248 (604)
Q Consensus 180 ~alLsaIGSiA~--ag~----~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g-e~f~py~~~~i~~L 248 (604)
.-++.++|.-.. .++ ...+.+..+++.|..|...++-.+-..+++....+.... . +.+.++....++++
T Consensus 323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 114444443211 111 234788899999999999888888888888888777642 1 45677777777666
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.16 E-value=0.016 Score=65.46 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=91.5
Q ss_pred CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH--HHHH-HHHHhhccCCChhHHHHHHHHHHhhhhhhc-
Q 007424 39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKII-NSITRNFRDKNSALQATCISTVSSLSPRVG- 114 (604)
Q Consensus 39 e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L--~kIl-~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~- 114 (604)
++|.|+|..|. ++++..|..|..+|+.|++.......+ .+++ +.|.+.|.|++..||.+|+.+|+.|+....
T Consensus 34 ~~i~Pll~~L~----S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDLK----SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHHS----SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHcC----CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 46777887764 678899999999999998765111111 2344 456677999999999999999999987642
Q ss_pred cc--hhH--HHHHHHHHHHcc-------------CCChh-------HHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHH
Q 007424 115 AS--AFV--TMLKLLSDALFT-------------EQDTN-------AQVGAALCLAATIDAAQDPDAGKL--GRMEVRLE 168 (604)
Q Consensus 115 d~--~~~--sllkPL~eaL~~-------------eqdk~-------vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~ 168 (604)
+. ... .+++||..+|-. ...+. +...+..+|-.++|+..+.. .++ ...++.|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~-~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH-EAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHhcccHHHHH
Confidence 10 011 167777776620 01111 22234566677777644322 222 23556666
Q ss_pred HHhcCC---chhHHHHHHHHHHHHHh
Q 007424 169 RLLKSE---VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 169 klL~s~---~~kaK~alLsaIGSiA~ 191 (604)
.+|.+. ...+..+++.++..+..
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 555322 34577788888887664
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.57 E-value=0.0026 Score=63.83 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----ch-----
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-----SA----- 117 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-----~~----- 117 (604)
|.....++++.+|.++...|. + ..+...++|+++.||.+++..+ ...+.. ..
T Consensus 103 L~~ll~D~d~~VR~~aA~~l~---------~------~~L~~L~~D~d~~VR~~aA~~l---~~~~l~~l~~D~d~~VR~ 164 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRLP---------L------EQLEQMAADRDYLVRAYVVQRI---PPGRLFRFMRDEDRQVRK 164 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC---------T------GGGGGGTTCSSHHHHHHHHHHS---CGGGGGGTTTCSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCC---------H------HHHHHHHcCCCHHHHHHHHHhc---CHHHHHHHHcCCCHHHHH
Confidence 333345666777777666321 1 1233446777777777776532 211110 00
Q ss_pred --hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC
Q 007424 118 --FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (604)
Q Consensus 118 --~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~ 195 (604)
...+-.+++..|..+.++.|...++..| . .+.|..++++++..++.+++..+|
T Consensus 165 ~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~-------- 219 (244)
T 1lrv_A 165 LVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS-------- 219 (244)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC--------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 0001223333444555555555555432 0 134777899999999988877754
Q ss_pred cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 196 DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 196 f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.+.|.. |.+++|.+|.+|++.||.
T Consensus 220 --------~~~L~~-L~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 220 --------LEALRE-LDEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp --------HHHHHH-CCCCCHHHHHHHHCCC--
T ss_pred --------HHHHHH-ccCCCHHHHHHHHHHhCC
Confidence 134444 488999999999998874
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.53 E-value=0.31 Score=55.27 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=150.9
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhc--------------------------CCCChHHHHHhhhhcCCCCCCchhH
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATV--------------------------DPTLLPTFLSCILSTNSSDKPGVRK 61 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L--------------------------~pe~ip~fL~~L~e~~ss~kp~~RK 61 (604)
++..|.+= .|.|+.+.+++.|-.+...- .++.|+.++.+|. +.+-++|-
T Consensus 65 li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~----~~df~vR~ 140 (651)
T 3grl_A 65 LIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE----EFDFHVRW 140 (651)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT----CCCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc----CccHHHHH
Confidence 45555554 45667777777664432211 2333666666664 55668999
Q ss_pred HHHHHHHHHHhhh--ccccc---HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-chhHH---HHHHHHHHHccC
Q 007424 62 ECIHVIATLSNSH--NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALFTE 132 (604)
Q Consensus 62 aaI~lLGvLae~h--~i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~~~~s---llkPL~eaL~~e 132 (604)
.++.+|.+|+... -+... -|.=++.++..|.|+.-.||..++-.|..|+..-.+ +...+ .+.+||..+-.|
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 9999999998766 12222 234578889999999999999999999999887644 33333 488999888544
Q ss_pred CC---hhHHHHHHHHHHHHHhhcCCCChhhHHH--HHHHHHHHhcCCc-h------hHHH--HHHHHHHHHHhcCcC---
Q 007424 133 QD---TNAQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEV-F------KAKA--AGLVVVGSVIGSGAV--- 195 (604)
Q Consensus 133 qd---k~vQ~~AA~cLaalIE~a~d~i~~yL~~--L~~RL~klL~s~~-~------kaK~--alLsaIGSiA~ag~~--- 195 (604)
.. -.+..-...+|..+...- ...-.|+.+ .+++|.++|+.+. . +.++ .++.+|+.+..-++.
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr~N-~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLKNN-NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred CCCccchhHHHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32 112222233345555431 001235554 6677778886442 1 2333 255566655543221
Q ss_pred c---CCch--HHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcC---cchhhhh-------hHHHHHHHhccCcc-hh
Q 007424 196 D---GSGL--KGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEK---DAVPEFK-------GKCLKIFESKRFDK-VK 257 (604)
Q Consensus 196 f---~pyf--~~lm~~L~e~L~s~--Dw~lRkaAaDaLg~LA~~~g---e~f~py~-------~~~i~~Le~cRfDK-vK 257 (604)
. .-.+ ..+++.|.+.+... .-.+|..|+-+++.+.+--. +.|..+- ..++..|-+.-.+| --
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 1 0011 12577788887655 57788888888888765221 3443221 33444433332233 35
Q ss_pred HHHHHHHHHHHHH
Q 007424 258 VVREVMNKMIEAW 270 (604)
Q Consensus 258 ~VRda~~~AL~~w 270 (604)
.+|-|+...++.+
T Consensus 380 ~lR~Aa~~cl~ay 392 (651)
T 3grl_A 380 VLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6798888888877
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.43 E-value=0.095 Score=62.68 Aligned_cols=155 Identities=6% Similarity=-0.064 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc----CC---Chh-HHHHHHHHHHHHH
Q 007424 80 ITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT----EQ---DTN-AQVGAALCLAATI 149 (604)
Q Consensus 80 L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~----eq---dk~-vQ~~AA~cLaalI 149 (604)
+.-|++.+.+.+.. ++...+.|+++|+|++|..+.......+++.++..|++ .. ++. +....++.+.+..
T Consensus 475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence 34445555555443 45779999999999999766422233466666666652 11 122 2333345555555
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCc--------CCchHHHHHHHHhhhcCCcHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVD--------GSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f--------~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+-+.. -.+||..++..|++.+..++-.++.++.+++..+.+-. ..+ .||++.++..+..+...=+-...-
T Consensus 555 ~wl~~-h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~ 633 (1073)
T 3gjx_A 555 RFLRA-HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 633 (1073)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred HHHHh-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence 54321 24799999999999998888889999999999888633 222 478888888887776654555566
Q ss_pred HHHHHHHHHHHHcCc
Q 007424 221 AAAEALWRLAVVEKD 235 (604)
Q Consensus 221 aAaDaLg~LA~~~ge 235 (604)
.-.|++|.|+...|.
T Consensus 634 ~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 789999999998874
No 110
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.93 E-value=1.4 Score=44.48 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH
Q 007424 4 ALKTSVNGLLNKLSD--RDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT 81 (604)
Q Consensus 4 eLk~rvl~~L~KLsD--rDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~ 81 (604)
.-+-++...||.-.. .|..=..+.....++.+-+|.-+|-||.-+.+...+....+||.++.-|+.+|..+ ..+++
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k--~~l~~ 89 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK--VELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 446677888876532 24444455555666666677778999999988766667789999999998888766 45788
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~ 161 (604)
++++.+...|+|.|+.|-.-+..+.+. +++.+|..+....+ +....-.+- +.+.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~------------iY~~~l~~i~~~~~--~~~~~~~~W------------~~m~ 143 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGS------------IYKNGLQYLCSLME--PGDSAEQAW------------NILS 143 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHH------------HHHHHHHHHTTSSS--CCHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH------------HHHHHHHHHhcCCC--CcchHHHHH------------HHHH
Confidence 999999999999999876666655544 35555666642211 110011111 2234
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
.+=.+++.++++.+..+|-.++=.+-.++
T Consensus 144 ~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 144 LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 44456666777777777777776666665
No 111
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=94.89 E-value=0.8 Score=53.16 Aligned_cols=250 Identities=14% Similarity=0.146 Sum_probs=155.3
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC--CCCchh-HHHHHHHHHHHhhh----cccccH
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS--DKPGVR-KECIHVIATLSNSH----NLSPYI 80 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~p---e~-ip~fL~~L~e~~ss--~kp~~R-KaaI~lLGvLae~h----~i~p~L 80 (604)
..+| |.+....+...|..||- |.| +. +|.+|.-++++.++ -...+| .+++.+|..++..- ...+||
T Consensus 348 ~fSK--~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl 424 (799)
T 1vsy_4 348 SQNK--NPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHI 424 (799)
T ss_dssp HTCS--SHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHH
T ss_pred hCcC--CcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3455 66677888888888886 555 56 89999999999887 444554 56678888776544 345799
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---------------------------------------------
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--------------------------------------------- 115 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--------------------------------------------- 115 (604)
..||...+-++-=.|+.--.++...+..++..+.=
T Consensus 425 ~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~ 504 (799)
T 1vsy_4 425 TNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNN 504 (799)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHH
Confidence 99999999999888887666666666666553320
Q ss_pred ------chhHHHHHHHHHHHc----cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh-HHHHHHH
Q 007424 116 ------SAFVTMLKLLSDALF----TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK-AKAAGLV 184 (604)
Q Consensus 116 ------~~~~sllkPL~eaL~----~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k-aK~alLs 184 (604)
..+..++.-+++-++ ...+..+-.+-..++..+++.+++ +.+...+.++++...+..+. +..++-.
T Consensus 505 ~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~n~~~~a~~~v~~ 581 (799)
T 1vsy_4 505 AFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWSNDSFKEKDPNYE 581 (799)
T ss_dssp HHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHSCSCCCSSSCCTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 012223333333332 223334444444556666676665 66777888888877666332 2222222
Q ss_pred H----HHHHHhcCcCcCCchHHHHHHHHhhh----cC-------------Cc----HHHHHHHHHHHHHHHHHcCcchhh
Q 007424 185 V----VGSVIGSGAVDGSGLKGLVSCLLGFL----SS-------------QD----WAARKAAAEALWRLAVVEKDAVPE 239 (604)
Q Consensus 185 a----IGSiA~ag~~f~pyf~~lm~~L~e~L----~s-------------~D----w~lRkaAaDaLg~LA~~~ge~f~p 239 (604)
. +++++.+... .|..++|.|..-+ .+ .| |. +-+|+.+....|..+-+
T Consensus 582 L~~~~~~a~~~~~P~---~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~-----l~iL~~~v~~~g~~lL~ 653 (799)
T 1vsy_4 582 LVTIPLAALVRRNNG---LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLY-----LTALNDVLRNCHESLLE 653 (799)
T ss_dssp HHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHH-----HHHHHHHHTTTGGGGGT
T ss_pred HHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHH-----HHHHHHHHhcCcHHHHc
Confidence 2 4555554322 2444444444222 11 11 54 45666666677888889
Q ss_pred hhhHHHHHHHhccCcchhHHH--H----HHHHHHHHHHhCCCC
Q 007424 240 FKGKCLKIFESKRFDKVKVVR--E----VMNKMIEAWKQVPDL 276 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VR--d----a~~~AL~~wK~i~~~ 276 (604)
|++++++++.-+ ++|+|..+ . -+...|..+=.+-..
T Consensus 654 y~deL~~il~~~-~~~~k~~~~~~~~~~ll~~lL~sLt~~yp~ 695 (799)
T 1vsy_4 654 YSDELITFMKYL-YDNVTNPPLDVITSIVIHSALATLCTTEIT 695 (799)
T ss_dssp THHHHHHHHHHH-HHSCCCHHHHHHHTTHHHHHHHHHHCCBCC
T ss_pred cHHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHhhheeec
Confidence 999999999988 66766655 5 455666666555444
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.88 E-value=0.87 Score=54.21 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----ccc-ccHHHHHHHHHhhccCCCh
Q 007424 25 AAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLS-PYITKIINSITRNFRDKNS 96 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i~-p~L~kIl~~IvrrLkDpDs 96 (604)
|++.|-.+....-|+. +..|...+.......++..|+.++++||.|+.-+ .+. ..++.|...+.+.+...|.
T Consensus 375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~ 454 (1056)
T 1lsh_A 375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE 454 (1056)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence 4444443333233433 5555555533222345678999999999996554 222 3377888888888888888
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc------CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~------eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
.-+..++.|||.+...- .+++|...|-+ +....++..|..||.++... +-..+-+-++.+
T Consensus 455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-------~p~~v~~il~~i 520 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-------DPRKVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-------chHHHHHHHHHH
Confidence 88999999999998652 35555554422 11234777788887766542 223344456677
Q ss_pred hc--CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 171 LK--SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 171 L~--s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+. ..+..+|-+++..+- ... |-. ..+..|..++. +.+-+++....-.|-.|+......+...
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm---~t~----P~~-~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~l 585 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFF---ESK----PSV-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDV 585 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHH---HTC----CCH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred hcCCCCChHHHHHHHHHHH---HHC----cCH-HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 73 347778766554443 211 221 45666777765 4689988888888877777543334333
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=93.53 E-value=0.42 Score=56.78 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=149.4
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-----CCCCCCchhHHHHHHHH-HHHhhhccccc
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-----NSSDKPGVRKECIHVIA-TLSNSHNLSPY 79 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~-----~ss~kp~~RKaaI~lLG-vLae~h~i~p~ 79 (604)
.-.+-.+|+.=-..||...=...+..+..+.||..+++|+.+|... .++..+..--.-+.+|. ++.+...-.+.
T Consensus 555 ~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~ 634 (997)
T 1vsy_5 555 ENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD 634 (997)
T ss_dssp HHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445555553224566666666678888889999999999988331 12222322222233333 33332322345
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------------------------h-hHHHHHHHHHHHc-
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------------A-FVTMLKLLSDALF- 130 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------------------------~-~~sllkPL~eaL~- 130 (604)
+.+++-.+. |..|-..||++...+|+.+......+ + +...+.-+|+.+-
T Consensus 635 ~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~ 712 (997)
T 1vsy_5 635 VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKN 712 (997)
T ss_dssp CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHH
Confidence 788887777 88888899999999998877665211 0 1112333344441
Q ss_pred --c---CCCh------hHHHHHHHHHHHHHhhcCCC----ChhhHHH-HHHHHHHHhcCCch-hHHHHHHHHHHHHHhcC
Q 007424 131 --T---EQDT------NAQVGAALCLAATIDAAQDP----DAGKLGR-MEVRLERLLKSEVF-KAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 131 --~---eqdk------~vQ~~AA~cLaalIE~a~d~----i~~yL~~-L~~RL~klL~s~~~-kaK~alLsaIGSiA~ag 193 (604)
+ +..+ .....+-..+.=+...+... ..+|++. ++|-|+.+.+..+. ..... ++...+...+
T Consensus 713 ~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~--~a~~~l~~ls 790 (997)
T 1vsy_5 713 LEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASL--DPVRLYAGLG 790 (997)
T ss_dssp GGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTC--CSHHHHHHTS
T ss_pred hhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhh--HHHHHHHHHh
Confidence 0 1011 01111222233333444443 3466666 77777777766633 22211 1222233333
Q ss_pred cCc-C-CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcch-hHHHHHHHHHHH
Q 007424 194 AVD-G-SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKV-KVVREVMNKMIE 268 (604)
Q Consensus 194 ~~f-~-pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKv-K~VRda~~~AL~ 268 (604)
... . .+.+.++..|.+... +..| .|.+++..|..+.-..= -.-..-...+.+++.++=+|+- -.||+.|..+|.
T Consensus 791 ~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLs 869 (997)
T 1vsy_5 791 YMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILS 869 (997)
T ss_dssp SSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 322 2 445556666666665 5789 99999999887765211 1111233678888999999999 999999999997
Q ss_pred HH
Q 007424 269 AW 270 (604)
Q Consensus 269 ~w 270 (604)
-+
T Consensus 870 gl 871 (997)
T 1vsy_5 870 DI 871 (997)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.14 E-value=4.3 Score=48.30 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHH
Q 007424 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~ 104 (604)
.+-.|-.+.+.++.++|..++..+.+ ++..|+--+-+|+.+.... -+. +|...+...+...-+ ++.
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT~~----a~~----~i~~~i~~~~l~~~e-a~~ 377 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATSE----ALL----FLKRTLASEQLTSAE-ATQ 377 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSHH----HHH----HHHHHHHTTCSCHHH-HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCCHH----HHH----HHHHHHHcCCCCHHH-HHH
Confidence 44456667777777777777777653 3456665444554443322 222 333334443333333 334
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcC--C-C-ChhhHHHHHHHHHHHhcCCchh
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQ--D-P-DAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~--d-~-i~~yL~~L~~RL~klL~s~~~k 177 (604)
+|..+. ++. .|...++.-+++.+.. ..++.+...|.+++..+|.... . . ..++++.+...|.+.++..+..
T Consensus 378 ~l~~~~-~~~-~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~ 455 (1056)
T 1lsh_A 378 IVASTL-SNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEE 455 (1056)
T ss_dssp HHHHHH-HTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh-ccC-CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChH
Confidence 444322 322 2322344444444421 2456677788999988887631 1 1 2366778888888888877777
Q ss_pred HHHHHHHHHHH
Q 007424 178 AKAAGLVVVGS 188 (604)
Q Consensus 178 aK~alLsaIGS 188 (604)
.+...|-+||-
T Consensus 456 ~~~~~LkaLGN 466 (1056)
T 1lsh_A 456 EIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 77777778884
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.68 E-value=3.1 Score=40.41 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=93.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHH-HHHhhccCCChhHHHHHHHHHHhhhhhhcc----
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIIN-SITRNFRDKNSALQATCISTVSSLSPRVGA---- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~-~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---- 115 (604)
+..|+..+.+...+ ..|++|+..|..=...|-+.||+-..+. .|...+. |.. .+..+-++++-+.+
T Consensus 9 lq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~----~L~~lm~~~~ALl~N~~l 79 (196)
T 4atg_A 9 LQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFK--EAE----VLKTCIALYFSLIKNKHV 79 (196)
T ss_dssp HHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHH----HHHHHHHHHHHHHcCCCC
Confidence 34455555555444 4577776666655555544444443333 2333443 222 33344444444443
Q ss_pred ---chhHHHHHHHHHHHccCC-C-hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 116 ---SAFVTMLKLLSDALFTEQ-D-TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 116 ---~~~~sllkPL~eaL~~eq-d-k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+=.|.+++|++..+++.+ . .....-||..|+.++..-++.-...-++++..+.+.|-++. +--....+||-.+.
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~-~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN-RSEDSQYGALYCLS 158 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHH
Confidence 125568888888887543 1 15888999999999998766554556778888888887664 22356777777777
Q ss_pred hcCcCcCCchHH-HHHHHHhhh
Q 007424 191 GSGAVDGSGLKG-LVSCLLGFL 211 (604)
Q Consensus 191 ~ag~~f~pyf~~-lm~~L~e~L 211 (604)
..|... ... ++|.|..++
T Consensus 159 ~lG~~~---vr~~llP~l~~~~ 177 (196)
T 4atg_A 159 ILSKNV---VNTVIREHAEEYK 177 (196)
T ss_dssp HHCHHH---HHTHHHHHHHHHH
T ss_pred HhHHHH---HHHhhhcCHHHHH
Confidence 766532 222 347776655
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.89 E-value=6.5 Score=38.16 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..|+.-+.+++.+ ... ..||+.+=...+ .+++||+- .+...+..-++ +...=..++..+.|+..=...+
T Consensus 10 q~yf~~It~a~~~----~~r---~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 10 QLYFDKILSMIKS----DMK---DIAIECLEKESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHHHHTS----TTH---HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHh----HHH---HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCC
Confidence 3488888888875 122 233444333211 22344432 34444444443 4444455677777777644455
Q ss_pred C-CchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhH
Q 007424 197 G-SGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 197 ~-pyf~~lm~~L~e~L~s~---Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~ 258 (604)
. ||+-.+||.+..|+-.. .-.+|..|++.|+.|....|+.....+.++++.|-..=.|..|+
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSC
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCC
Confidence 4 99999999999999531 22899999999999999888766666677777776655565443
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=87.24 E-value=15 Score=38.30 Aligned_cols=157 Identities=12% Similarity=0.201 Sum_probs=109.2
Q ss_pred hHHHHHhh-hhcCCCCCCchhHHH-HHHHHHHHhhh--cccccHHHHHHHHH----hhccC---CChhHHHHHHHHHHhh
Q 007424 41 LPTFLSCI-LSTNSSDKPGVRKEC-IHVIATLSNSH--NLSPYITKIINSIT----RNFRD---KNSALQATCISTVSSL 109 (604)
Q Consensus 41 ip~fL~~L-~e~~ss~kp~~RKaa-I~lLGvLae~h--~i~p~L~kIl~~Iv----rrLkD---pDs~VR~Ac~~aLg~L 109 (604)
+|+++..+ .||..+ -|..|..- +.++..++.-. .+.|++|.|+..|. .-+++ .-|-.|.+=-.=|.++
T Consensus 71 ippLl~~VL~DY~~~-vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 78998755 777554 46677654 46677776655 89999999998865 34443 3366788887778888
Q ss_pred hhhhccc--hhH-HHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC--CCC-----hhhHHHHHHHHHHHhcCC--
Q 007424 110 SPRVGAS--AFV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ--DPD-----AGKLGRMEVRLERLLKSE-- 174 (604)
Q Consensus 110 Ae~l~d~--~~~-sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~--d~i-----~~yL~~L~~RL~klL~s~-- 174 (604)
..++... ... .-++.+++++. .+.++++...+-.+|..++++.. +.. ..|+-.++..++..|.+.
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 8776541 011 14566666653 57889999999999999988864 222 245666777888888644
Q ss_pred --chhHHHHHHHHHHHHHhcCcCcCC
Q 007424 175 --VFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 175 --~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
+|+....+|.-+-.++..|....|
T Consensus 230 k~gF~~q~~iL~~lf~~ve~~~i~~p 255 (321)
T 1w9c_A 230 TAGLTMHASILAYMFNLVEEGKISTS 255 (321)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred hccHHHHHHHHHHHHHHHHcCccccc
Confidence 778888999988888877654334
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.07 E-value=43 Score=35.58 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAA----- 152 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a----- 152 (604)
.|+.+++.|+..-.|++..||.-++.=++..+.. +..... .+..|...| .+.++.|...+..|...+...+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL-~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLL-RDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777778888899999999988877766643 122223 444444444 6788888888777776655331
Q ss_pred --CCC------ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 153 --QDP------DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 153 --~d~------i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+.. .-+.+..+-.+++.++.+.+..+|-.++=.+-.++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 111 12456777888999999999999999888888777
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.65 E-value=42 Score=36.98 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD 93 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD 93 (604)
++.-+-+.|+|-|-.+..+.|.=+ |..++.++. .++..+|+.||+.|..+|.. .|++||.-++.+.|+-
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE----Ded~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCE----DEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT 111 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT----CSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc
Confidence 456688999999999999987533 566565555 45668999999999999986 6899999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
.|+.-+.+.-++|-.|-..=.+ ..|..||..+
T Consensus 112 dd~~E~~~V~~sL~sllk~Dpk----~tl~~lf~~i 143 (507)
T 3u0r_A 112 DDSAEFNLVNNALLSIFKMDAK----GTLGGLFSQI 143 (507)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcChH----HHHHHHHHHH
Confidence 9998888888888777554311 2444455544
No 120
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=80.40 E-value=16 Score=41.56 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHh---hcCC
Q 007424 80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ-DTNAQVGAALCLAATID---AAQD 154 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE---~a~d 154 (604)
-..-|+.++.||....- .=|++|+.+|-.++..+....-..-+++|+..|-.+. |...-. .+|+.++- ..++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~---~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIG---YALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHH---HHHHHHHHHHCCC--
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHH---HHHHHHHHHhCCCCc
Confidence 45567778888866443 3599999999999988732212226999999996443 322222 23444422 1111
Q ss_pred ------------CChhhH-------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC-cCCc---hHHHHHHHHhhh
Q 007424 155 ------------PDAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSG---LKGLVSCLLGFL 211 (604)
Q Consensus 155 ------------~i~~yL-------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~-f~py---f~~lm~~L~e~L 211 (604)
.+...+ +.-++-|+.+|++.+|.+|-..+.++..+...-.. ...+ .+.-|+.|.+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 010111 23466689999999999999988888887754322 2111 124689999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q 007424 212 SSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
.++.=.+|-.|+-.|..|...
T Consensus 176 ~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTT
T ss_pred hCchHHHHHHHHHHHHHHhcC
Confidence 999999999999999998873
No 121
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=73.34 E-value=73 Score=33.38 Aligned_cols=168 Identities=14% Similarity=0.011 Sum_probs=103.1
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHh-hhhhhcc-chhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSS-LSPRVGA-SAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~-LAe~l~d-~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
++.+++.+-.-.|+..|..++...+.-+++.|.+ +.+...- ..|+. =+.-|+..+ .+.+.+.| +|+|.++.+
T Consensus 111 iLrtsps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q---~Y~L~AL~~ 186 (339)
T 3dad_A 111 ILRTQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQ---SYILRALGQ 186 (339)
T ss_dssp EEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHH---HHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHH---HHHHHHHHH
Confidence 6678888999999999998888888888888888 5433211 23333 245555555 45577777 566666666
Q ss_pred hcCC-----CChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-C---------------cCCchHHHHHHHHh
Q 007424 151 AAQD-----PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-V---------------DGSGLKGLVSCLLG 209 (604)
Q Consensus 151 ~a~d-----~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~---------------f~pyf~~lm~~L~e 209 (604)
-+.. .++. =+..+.+|+.++++....+-..++..+-.++.... . -.+.+..+|..|.+
T Consensus 187 LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 187 LMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE 265 (339)
T ss_dssp HTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred HHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence 5544 2222 15577888888887644443444554544443111 1 12445566666553
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHhcc
Q 007424 210 FLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKR 252 (604)
Q Consensus 210 ~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~cR 252 (604)
. .+.|-++.-.|+-.|.++-...+ +.|. .++..|+..-
T Consensus 266 ~-~~~D~elq~~amtLIN~lL~~apd~d~~~----di~d~Le~~g 305 (339)
T 3dad_A 266 K-NGADPELLVYTVTLINKTLAALPDQDSFY----DVTDALEQQG 305 (339)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHHHCSSHHHHH----HHHHHHHHTT
T ss_pred c-CCCCHHHHHHHHHHHHHHHhcCCChhHHH----HHHHHHHHcc
Confidence 2 24688888888888888777655 3354 3456666444
No 122
>3vh7_A Envelope glycoprotein GP160; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_C 3p7k_A
Probab=72.44 E-value=6.7 Score=31.12 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH---HHHhccchhhhHHHhhhhhHHHHHHH
Q 007424 447 LSTIRNQLVQIEQQQSSLLDLLQ---RFIGRSESGMQSLETRVLGLELALDE 495 (604)
Q Consensus 447 ~~~ir~ql~qiE~qQs~l~~llQ---~Fmg~s~~~m~~Le~rV~gLE~a~de 495 (604)
|.-|-..|.=|-+||.+|+..++ -.....-=|+..|+.||.++|.-+.+
T Consensus 4 ~~~~~~~lsGivqQq~nlLraieaqq~ll~~tv~GikqlqarvlA~EryLkd 55 (58)
T 3vh7_A 4 MADIGSEFSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKS 55 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 45577788888999999888764 44445556899999999999987753
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=66.92 E-value=1e+02 Score=31.46 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=41.3
Q ss_pred CCchhHHHHHHHHHHHhh---h-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc
Q 007424 56 KPGVRKECIHVIATLSNS---H-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~---h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~ 114 (604)
.|+.+--++++|..+-.. . .+..+...|+..+...+.+++..||-|++-.+-.+|-++.
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~ 223 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH 223 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 344555566666666322 2 4556788899998888888888999988877777776653
No 124
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=65.82 E-value=23 Score=35.54 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 141 AALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 141 AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
-...|..+-|-+-.....+++++++.++.+-.+++..+|..+++.|.-+. ..-..+...+++.|...|.++|-.+-|
T Consensus 32 kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k~~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 32 KCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVKVELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34556666664333334689999999999887888899999888887544 222357778999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007424 221 AAAEALWRLAV 231 (604)
Q Consensus 221 aAaDaLg~LA~ 231 (604)
.|+.+...+=.
T Consensus 109 ~~I~~~~~iY~ 119 (257)
T 3gs3_A 109 RVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877543
No 125
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=65.53 E-value=1.4e+02 Score=31.35 Aligned_cols=193 Identities=12% Similarity=0.080 Sum_probs=115.7
Q ss_pred CCCCCCchhHHHHHHHHHHHhhh---------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--
Q 007424 52 NSSDKPGVRKECIHVIATLSNSH---------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV-- 119 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvLae~h---------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~-- 119 (604)
...-+...||.+..+++.+-+-- ++..| |.||-.++++-.+||... ..|.|-..+++.. ..
T Consensus 87 l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl------~~G~mLRecir~e~la~~ 159 (341)
T 1upk_A 87 LQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIAL------NCGIMLRECIRHEPLAKI 159 (341)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHH------HHHHHHHHHHTSHHHHHH
T ss_pred cccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHh------HHHHHHHHHHHhHHHHHH
Confidence 44556688999999999984421 44444 899999999999999642 2333333333211 00
Q ss_pred ----HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--C-CCChhhH----HHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007424 120 ----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--Q-DPDAGKL----GRMEVRLERLLKSEVFKAKAAGLVVVGS 188 (604)
Q Consensus 120 ----sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--~-d~i~~yL----~~L~~RL~klL~s~~~kaK~alLsaIGS 188 (604)
..+-.+|+.+ .-.+= ..|+-|++.+=|-+ + ....+|| ......+-+||.+++|-.|-..|-.+|-
T Consensus 160 iL~~~~f~~fF~yv-~~~~F---diasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 160 ILWSEQFYDFFRYV-EMSTF---DIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHSGGGGHHHHHT-TCSSH---HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHh-cCCCc---hHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 0233455555 22222 33444444444332 1 1223454 4577788899999999999999999998
Q ss_pred HHhc--CcCcC-Cch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC------cchhhhhhHHHHHHHhccCcc
Q 007424 189 VIGS--GAVDG-SGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK------DAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 189 iA~a--g~~f~-pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g------e~f~py~~~~i~~Le~cRfDK 255 (604)
+.-- .-.+. -|+ +.-+..+...|.+..-.++--|.-..-....-.. +.+..=++..|+.|.....||
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8742 22221 222 1234555666677777777777776666554221 122223477888888888888
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=63.75 E-value=1.6e+02 Score=31.49 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=67.5
Q ss_pred HHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHH-----HHHHh
Q 007424 121 MLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVV-----GSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaI-----GSiA~ 191 (604)
+..+++..|+. ..+..-+..--.=|..++|..++. ...+...|+.++.+++.+++|++-..++-.. -+++
T Consensus 248 L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li- 326 (403)
T 3fga_B 248 LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI- 326 (403)
T ss_dssp GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-
T ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH-
Confidence 34444445542 223333333333345555554432 2345677888999999999999765544322 2222
Q ss_pred cCcCcCCchHHHHHHHHhhhc---CC--cHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 192 SGAVDGSGLKGLVSCLLGFLS---SQ--DWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~---s~--Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
..+-..++|.+-+.|- .. +-.+|+.|..+|..+...-++.|..-
T Consensus 327 -----~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~ 375 (403)
T 3fga_B 327 -----SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDC 375 (403)
T ss_dssp -----HTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred -----HHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 1334456666666652 23 45789999999999998877777654
No 127
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=49.58 E-value=2.6e+02 Score=31.79 Aligned_cols=135 Identities=8% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHhhcCCCChHHHHHhhhhc-CC-CCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHh
Q 007424 31 SIAATVDPTLLPTFLSCILST-NS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSS 108 (604)
Q Consensus 31 ~lA~~L~pe~ip~fL~~L~e~-~s-s~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~ 108 (604)
..+..|+......|+..|... .- .-++.+.++-+..|+.||..+ ..||..++..|++.+.-+... ..-+-.+|..
T Consensus 124 ~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~--~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~ 200 (649)
T 3tj1_A 124 SNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSI--PKWWQDVSMILVSCFILPIKQ-TVCHHDMLKY 200 (649)
T ss_dssp HTGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHH
T ss_pred hhhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhccCCCcc-cHHHHHHHHH
Confidence 333345544455566666543 11 112356677888888888766 668999999999998876432 1124555555
Q ss_pred hhhhhccchhHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 109 LSPRVGASAFVTMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 109 LAe~l~d~~~~sllkPL~eaL~~--eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
|.+.. +--..+|.|++..-|- ...+.++..=...|=.+++..+.--...|.-++.|++++
T Consensus 201 Il~lv--P~s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierliki 262 (649)
T 3tj1_A 201 FLRMI--PSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISI 262 (649)
T ss_dssp HHHHC--GGGHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Confidence 55554 2222366776666653 234445555555566666655533334566666666643
No 128
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.93 E-value=53 Score=30.15 Aligned_cols=73 Identities=14% Similarity=0.032 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH---HHHHHhccC--------cchhHHHHHHHHHHH
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC---LKIFESKRF--------DKVKVVREVMNKMIE 268 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~---i~~Le~cRf--------DKvK~VRda~~~AL~ 268 (604)
+..+|..|...|.+..|.+.-=|+..|-.|.....+.|...+..- |+.|.++++ |.-..||+.|.+.+.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 467888888888888888766677777777654446666655444 444444444 234789999999999
Q ss_pred HHHh
Q 007424 269 AWKQ 272 (604)
Q Consensus 269 ~wK~ 272 (604)
++..
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9853
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.87 E-value=1.4e+02 Score=27.90 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhH-HHHHHHHHHHhcC------CchhHHHHHHHHHHHHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLKS------EVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL-~~L~~RL~klL~s------~~~kaK~alLsaIGSiA 190 (604)
.++-|..-| ...++++|.-|-.-|+.++.|.+.... ++- .+.+.+|.+++.. .+..+|.-++.+|.+-+
T Consensus 51 A~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKI-QSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 344444455 567899999999999999999865332 111 2356667777742 23455555555555433
No 130
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=44.57 E-value=2.2e+02 Score=32.97 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=76.7
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHh--c-Cc
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS---EVFKAKAAGLVVVGSVIG--S-GA 194 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s---~~~kaK~alLsaIGSiA~--a-g~ 194 (604)
+++.++.+++. .+..+...+..||..+.--.+....-.+|.++.|+...|++ ...+--.++|.++.+++. + ..
T Consensus 340 l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQN-KNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 45555556653 34456677788888877755522234689999999999877 334433455556665553 2 23
Q ss_pred CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 195 VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 195 ~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
.+.+++..++..+.+-+.-+|...=..++..+..++..++
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 3446777777777777788999988889999999998554
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.42 E-value=1.7e+02 Score=28.05 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhc
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~a 192 (604)
++-|..-| ...++++|.-|-.-|+.++.|.+......+ .+.+..|.++++. .+..+|.-++..|..-+.+
T Consensus 44 ~r~l~krl-~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 44 FAAIKKKM-NSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 33344445 467889999999999999999765331111 2255566666653 3678888888888876643
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=41.45 E-value=2e+02 Score=25.82 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=50.0
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
++-|-.-| ...++++|.-|-.-|+.++.|.+......+ .+.+..|.++++..+..+|.-++.+|.+-+.
T Consensus 44 ~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344445 567899999999989999999876442221 3466667777766788899999999987775
No 133
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=41.15 E-value=5.9e+02 Score=31.32 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=116.9
Q ss_pred CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--
Q 007424 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-- 115 (604)
Q Consensus 38 pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-- 115 (604)
.+.|+.+|+....-..+.++.+|..+..+|..+=..+. ..+=++|+..++..+....+.=-++|+++|..|+....+
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l 473 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAM 473 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHH
Confidence 34588888888887888888999999888888755540 112344554444444444444345689999988876433
Q ss_pred chhHHHHHHHHHHHccCCChhHHHHHHHHH---HHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHh
Q 007424 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCL---AATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA-AGLVVVGSVIG 191 (604)
Q Consensus 116 ~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL---aalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~-alLsaIGSiA~ 191 (604)
.++..+++.+++.| ..-+. .|+...+.+ -++.+... .....-..|.-=+-|.|.++.++.|. .+|+|+.-+-.
T Consensus 474 ~~~a~~l~giLD~l-~~l~~-~QiRklf~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~ 550 (1323)
T 3s4w_B 474 RLNAAFVKGILDYL-ENMSP-QQIRKIFCILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGI 550 (1323)
T ss_dssp HHTHHHHHGGGGGG-GGCCH-HHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh-cCCCH-HHHHHHHHHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHH
Confidence 35566899999998 33332 343333333 33433322 11122344555566899999888773 34444433323
Q ss_pred cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchhhhhhHHHHHHHhccCcc
Q 007424 192 SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~py~~~~i~~Le~cRfDK 255 (604)
.++... -....++ +...-++ +..+.|...|..+-...+ +..+-|-+..-+++..+++|.
T Consensus 551 ~~~~~~-~~~~s~~---~~~~l~~-~~~~q~~~Ll~lv~~s~~~sp~~~AL~YDELA~~i~~~~l~~ 612 (1323)
T 3s4w_B 551 MAEDRS-VPSNSSQ---RSANVSS-EQRTQVTSLLQLVHSCTEHSPWASSLYYDEFANLIQERKLAP 612 (1323)
T ss_dssp TTC--------------------C-HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHhcc-ccCcccc---ccccCCH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhcCCCCH
Confidence 332211 0111111 1111112 234566666666555443 566667788888998999885
No 134
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.09 E-value=25 Score=34.35 Aligned_cols=67 Identities=6% Similarity=-0.008 Sum_probs=44.5
Q ss_pred HhhhhcCCCCCCchhHHHHHHHH-HHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhh
Q 007424 46 SCILSTNSSDKPGVRKECIHVIA-TLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (604)
Q Consensus 46 ~~L~e~~ss~kp~~RKaaI~lLG-vLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~ 112 (604)
..+.+-..+++...|+.++...+ +++..+ +-..+++.++..+...+.|++--||.|..++|..++..
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 34444455677788888887333 222212 12357778888888888888888888888888777655
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=39.32 E-value=99 Score=28.20 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC----
Q 007424 100 ATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS---- 173 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s---- 173 (604)
..+-+|+.+|...+ ...++++|..|-.-|+.++.|.+......+ .+.+.+|.+++..
T Consensus 34 ~~~k~a~rai~krl-----------------~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~ 96 (148)
T 1mhq_A 34 NGPTHAPWLLAHKI-----------------QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLG 96 (148)
T ss_dssp HHHHHHHHHHHHHH-----------------TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTS
T ss_pred ccHHHHHHHHHHHh-----------------cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCC
Q ss_pred --CchhHHHHHHHHHHHHHhc
Q 007424 174 --EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 174 --~~~kaK~alLsaIGSiA~a 192 (604)
.+..+|.-++.+|.+-+.+
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 97 SWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.28 E-value=2.3e+02 Score=25.91 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhc
Q 007424 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 123 kPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s------~~~kaK~alLsaIGSiA~a 192 (604)
+-|-.-| ...++++|..|-.-|+.++.|.+......+ .+.+..|.+++.. .+..+|.-++.+|.+-+.+
T Consensus 51 ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 51 RLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333344 467899999999999999999886542211 3467778888863 4678899899999877753
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=38.59 E-value=39 Score=37.00 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
.|+.+-..||.=+|.++.+..++.... =.|..+..|+++.|+.|+.-|-.|+.+++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 478899999999999999996543222 36888888889999999999999998876
No 138
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=38.53 E-value=44 Score=32.12 Aligned_cols=130 Identities=8% Similarity=-0.101 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhH
Q 007424 19 RDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
++-.-+|+-.|..+...+.++.++. +..+..+ -+++..=-..-.++|-+. ..|-..+++.|.+=++|++.-+
T Consensus 69 ~E~r~la~~~l~~~~~~~~~~~l~~-~~~~l~~--~~nWd~~D~~a~~~~~~~-----~~~~~~~~~~i~~W~~s~~~w~ 140 (220)
T 2b6c_A 69 REYQYVAIDLALQNVQRFSLEEVVA-FKAYVPQ--KAWWDSVDAWRKFFGSWV-----ALHLTELPTIFALFYGAENFWN 140 (220)
T ss_dssp HHHHHHHHHHHHHTGGGCCHHHHHH-GGGGTTT--TCSHHHHHHHHHHHHHHH-----HHSGGGHHHHHHHHTTCSSHHH
T ss_pred hHHHHHHHHHHHHHHhhCCHHHHHH-HHHHhcc--CCcHHHHHHHHHHHHHHH-----HHChHHHHHHHHHHHcCCCHHH
Confidence 4455566666665554555444433 2223222 223322211112333332 2344556777888899999999
Q ss_pred HHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
|+++..++ | .+ .+......+-++++.+.++.+-.||.+.+.+|..+.-.-++...+||
T Consensus 141 rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 141 RRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 88887744 4 33 33444466778888887888889999999999777665333333444
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=37.79 E-value=3.7e+02 Score=28.02 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=94.8
Q ss_pred HHHHHHHHhhhc--CChhHHHHHHHHHHHHH-hh-------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh-
Q 007424 5 LKTSVNGLLNKL--SDRDTYSQAAKELDSIA-AT-------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS- 73 (604)
Q Consensus 5 Lk~rvl~~L~KL--sDrDT~r~A~~eLD~lA-~~-------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~- 73 (604)
+-.++-+++.|| ++.+..+-|+..|..+- .+ +..+.+..++..+.+. +..+--+++++|+.|-.-
T Consensus 116 ps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v 191 (339)
T 3dad_A 116 LSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFV 191 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhcc
Confidence 347888899999 57778999999999843 32 2344466677766544 557889999999999543
Q ss_pred --h--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-h-hHH------------HHHHHHHHHc--cCC
Q 007424 74 --H--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-A-FVT------------MLKLLSDALF--TEQ 133 (604)
Q Consensus 74 --h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~-~~s------------llkPL~eaL~--~eq 133 (604)
. .++ | +..|.-|...+...+..|-+.|+.-|-.++++.... + ... .+..|+..|. +..
T Consensus 192 ~Gm~gvvs-~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 192 DGMLGVVA-H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp HHHHHHHH-C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred ccccchhC-C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 2 332 3 445555555555677778888888887777775210 0 000 2667777773 134
Q ss_pred ChhHHHHHHHHHHHHHhhcCC
Q 007424 134 DTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 134 dk~vQ~~AA~cLaalIE~a~d 154 (604)
|..+|..|..=+-+++.++++
T Consensus 270 D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHHhcCCC
Confidence 667777766666788888775
No 140
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide inhibitor, coiled coil, SIV envelope glycoprotein GP41; 1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B 2siv_A
Probab=36.71 E-value=54 Score=29.60 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHH---HHHHhccchhhhHHHhhhhhHHHHHHH
Q 007424 455 VQIEQQQSSLLDLL---QRFIGRSESGMQSLETRVLGLELALDE 495 (604)
Q Consensus 455 ~qiE~qQs~l~~ll---Q~Fmg~s~~~m~~Le~rV~gLE~a~de 495 (604)
.=|=.||.+|+..+ |-...-+.=|+..|..||..+|+-+.+
T Consensus 8 ~givqqq~nllraieaqq~ll~ltvwGikqLqaRvlA~Erylkd 51 (123)
T 1qbz_A 8 AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKD 51 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhcccccccc
Confidence 34566777777665 234445556999999999999998864
No 141
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=35.36 E-value=7.2e+02 Score=30.60 Aligned_cols=144 Identities=15% Similarity=-0.002 Sum_probs=79.9
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHH
Q 007424 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSC 206 (604)
Q Consensus 127 eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~ 206 (604)
+.|+...++.++.-++.....+....++ -|-++++..|+....+.+..-..+++.++..++.-.......+...+..
T Consensus 406 ~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~g 482 (1323)
T 3s4w_B 406 QTLFHSQDQRIILFGSLLYKYAFKFFDT---YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKG 482 (1323)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHH
Confidence 3444556666666555555555444321 1233455555554444433334557777777775332222223456777
Q ss_pred HHhhhcC-CcHHHHHHHHHHHHHHHHHcC-c---chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 207 LLGFLSS-QDWAARKAAAEALWRLAVVEK-D---AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 207 L~e~L~s-~Dw~lRkaAaDaLg~LA~~~g-e---~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
|.+|+.+ ...++|+. .+.|+++|-.-+ + .+..-..-+|+--=+..-.|+| |==++-|+...+.+...
T Consensus 483 iLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~K--riGIIGav~~v~~~~~~ 554 (1323)
T 3s4w_B 483 ILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYK--LIGIIGAVTMAGIMAED 554 (1323)
T ss_dssp GGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHH--HHHHHHHHHHHHHTTC-
T ss_pred HHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhh--hhhHHHHHHHHHHHHHh
Confidence 8888875 56899987 999999987554 2 2332223344444444445555 44556666666666644
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=32.84 E-value=1.9e+02 Score=26.74 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh------hhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP------EFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~------py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
.++..|...|...+-.+.-.|+..|-.+..--|..|. .|.+..++++. .+.| ..||+-+.+.|+.|..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~-~~~~--~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK-NKAH--PKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH-TTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc-cCCC--HHHHHHHHHHHHHHHH
Confidence 4566677777766666777788888888887775554 24456677775 3444 4899999999999986
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=32.30 E-value=5.1e+02 Score=27.95 Aligned_cols=142 Identities=17% Similarity=0.250 Sum_probs=71.6
Q ss_pred HHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHH-----HHHHh
Q 007424 121 MLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVV-----GSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaI-----GSiA~ 191 (604)
+..+++..|+. ..+..-|..--.=|..++|..++.. ..+...|+.+|.+++++++|++-..++-.. -+++
T Consensus 281 L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li- 359 (449)
T 2npp_B 281 LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI- 359 (449)
T ss_dssp GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-
T ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-
Confidence 44555556552 2233333333333455555543322 345677899999999999999855544321 1111
Q ss_pred cCcCcCCchHHHHHHHHhhhc---CCcH--HHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHH
Q 007424 192 SGAVDGSGLKGLVSCLLGFLS---SQDW--AARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKM 266 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~---s~Dw--~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~A 266 (604)
..+-..++|.+-+.|- ..-| .+|..|..+|..+...-++.|. .|...++. +|-+. .+...+-
T Consensus 360 -----~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~----~c~~~~~~---~~~~~-~~~~~~r 426 (449)
T 2npp_B 360 -----SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD----DCTQQFKA---EKLKE-KLKMKER 426 (449)
T ss_dssp -----HTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHH----HHHHHHHH---HHHHH-HHTSCC-
T ss_pred -----HhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHH---HHHHH-HHHHHHH
Confidence 1334456777777662 2344 5799999999988876665554 33443332 11111 1112334
Q ss_pred HHHHHhCCCC
Q 007424 267 IEAWKQVPDL 276 (604)
Q Consensus 267 L~~wK~i~~~ 276 (604)
.+.|+.|...
T Consensus 427 ~~~W~~i~~~ 436 (449)
T 2npp_B 427 EEAWVKIENL 436 (449)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4678888744
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.13 E-value=1.3e+02 Score=29.23 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=47.4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~ 191 (604)
.++-|-.-| ...++++|..|..-|+.++.|.+......+ .+.+..|.++++. .+..+|.-++.+|.+-+.
T Consensus 46 a~ral~krl-~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKV-NDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 344455555 467899999999999999999876432111 2344556666643 367788888888887664
No 145
>2zfc_A HIV-1 GP41; peptide, viral protein; 1.50A {Synthetic}
Probab=30.34 E-value=64 Score=24.40 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=14.5
Q ss_pred hhhHHHhhhhhHHHHH
Q 007424 478 GMQSLETRVLGLELAL 493 (604)
Q Consensus 478 ~m~~Le~rV~gLE~a~ 493 (604)
|+..|..||..+|..+
T Consensus 33 Gikqlqarvla~eryl 48 (49)
T 2zfc_A 33 GVKQLQARVLALERYI 48 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHccchhhhhcccccc
Confidence 9999999999999864
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.83 E-value=3.4e+02 Score=24.88 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhH-HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhc
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL-~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~a 192 (604)
.++-|..-| ...++++|..|-.-|+.++.|.+.... ++- .+.+..|.++++. .+..+|.-++.+|..-+.+
T Consensus 53 A~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRV-NHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 344444445 567899999999999999999876443 221 3466777777765 4678888888888876653
No 147
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.42 E-value=2e+02 Score=28.38 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCCchhHHHHHHHHHHHh----hh-ccccc--HHHHHHHHHhhccCC----ChhHHHHHHHHHHhhhhhhccch-hHHHH
Q 007424 55 DKPGVRKECIHVIATLSN----SH-NLSPY--ITKIINSITRNFRDK----NSALQATCISTVSSLSPRVGASA-FVTML 122 (604)
Q Consensus 55 ~kp~~RKaaI~lLGvLae----~h-~i~p~--L~kIl~~IvrrLkDp----Ds~VR~Ac~~aLg~LAe~l~d~~-~~sll 122 (604)
..+..+-=+++++..+-. +. .+..+ ...++..|...+.|. +..+|-|++-.+-.+|-+..+.. ...++
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~ 181 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELL 181 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHH
T ss_pred CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 345567777777777733 22 34344 334444444444442 44577777777777766654321 12245
Q ss_pred HHHHHHH
Q 007424 123 KLLSDAL 129 (604)
Q Consensus 123 kPL~eaL 129 (604)
.++.+++
T Consensus 182 ~~l~~~i 188 (253)
T 3gae_A 182 PIVADAI 188 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 148
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.36 E-value=29 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=20.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHhhhcCcc
Q 007424 479 MQSLETRVLGLELALDEISYDLAVSTGRM 507 (604)
Q Consensus 479 m~~Le~rV~gLE~a~deis~dla~ssgr~ 507 (604)
+..||.||..||..|.++.-+...+.|..
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~~~~~~~~ 78 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDPTKIRGNI 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 45789999999998887655544444433
No 149
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.79 E-value=1.4e+02 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007424 457 IEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEI 496 (604)
Q Consensus 457 iE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~dei 496 (604)
|-..=.++-+.|.+|.-+..+-+..|+.|+.-||+.|+=+
T Consensus 25 in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iL 64 (75)
T 3p8c_E 25 ITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYI 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467788899999999999999999999999999865
No 150
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system; 3.30A {Human immunodeficiency virus 1}
Probab=23.18 E-value=78 Score=27.33 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHHHHHHhhHHHHHHH---HHHhccchhhhHHHhhhhhHHH
Q 007424 454 LVQIEQQQSSLLDLLQ---RFIGRSESGMQSLETRVLGLEL 491 (604)
Q Consensus 454 l~qiE~qQs~l~~llQ---~Fmg~s~~~m~~Le~rV~gLE~ 491 (604)
|.=|-.||.+|+..+. -...-.-=|+..|..||..+|+
T Consensus 12 l~givqqq~nll~aieaqq~ll~ltvwGikqlqarvlA~er 52 (96)
T 3p30_A 12 LSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLSGGR 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 3567888888887653 4445556699999999999998
No 151
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=23.18 E-value=4.9e+02 Score=24.78 Aligned_cols=190 Identities=7% Similarity=-0.027 Sum_probs=99.2
Q ss_pred HHHHHHHHhhhcCChhHHHH--------------HHHHHHHHHhhc----CCC---ChHHHHHhhhhcCCCCCCchhHHH
Q 007424 5 LKTSVNGLLNKLSDRDTYSQ--------------AAKELDSIAATV----DPT---LLPTFLSCILSTNSSDKPGVRKEC 63 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~--------------A~~eLD~lA~~L----~pe---~ip~fL~~L~e~~ss~kp~~RKaa 63 (604)
+...+++.|..++|.+.+.. -+-.|..+|+.+ +.. .+..|+..|.+. ++|..-
T Consensus 5 ~~~~i~~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~------~~~E~r 78 (232)
T 3jxy_A 5 FVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDL------PEREFQ 78 (232)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTS------SBHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcC------cHHHHH
Confidence 55678889999999986653 334455566654 111 122455555532 467777
Q ss_pred HHHHHHHHhhh-cccc-cHHHHHHHHHhhccCCChhH-HHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHH
Q 007424 64 IHVIATLSNSH-NLSP-YITKIINSITRNFRDKNSAL-QATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVG 140 (604)
Q Consensus 64 I~lLGvLae~h-~i~p-~L~kIl~~IvrrLkDpDs~V-R~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~ 140 (604)
+.+++.+.... .+.+ .++.+-.. +.. .++-.| -.-|..++|.+...- + ..+.+++.....+.+..++..
T Consensus 79 ~~ai~~l~~~~k~~~~~~l~~~~~~-l~~--~~nWd~~D~~a~~~~g~~~~~~---p--~~~~~~l~~W~~s~~~w~rR~ 150 (232)
T 3jxy_A 79 AAALDIMQKYKKHINETHIPFLEEL-IVT--KSWWDSVDSIVPTFLGDIFLKH---P--ELISAYIPKWIASDNIWLQRA 150 (232)
T ss_dssp HHHHHHHHHTGGGCCGGGHHHHHHH-HTS--SCCHHHHHHHTTTHHHHHHHHC---G--GGGGGTHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-Hcc--CCChHHHHHhhHHHHHHHHHHC---H--HHHHHHHHHHhcCCchHHHHH
Confidence 77777775433 2222 23322222 221 233333 333445666554432 1 112233333435667777777
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 141 AALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 141 AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
|..++-...+ ..-...+.+-+..++.++.+-++.|+-=++. .++..+ -+.+++.|.+. .-++|..|+
T Consensus 151 ai~~~l~~~~------~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr---~~~k~~---p~~v~~fl~~~-~l~~~~~r~ 217 (232)
T 3jxy_A 151 AILFQLKYKQ------KMDEELLFWIIGQLHSSKEFFIQKAIGWVLR---EYAKTN---PDVVWEYVQNN-ELAPLSKRE 217 (232)
T ss_dssp HHHTTTTCGG------GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HHTTTC---HHHHHHHHHHS-CCCHHHHHH
T ss_pred HHHHHHHHHh------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHhhC---HHHHHHHHHHC-CCCHHHHHH
Confidence 6665522111 1122344455566778888888877666665 444432 24555666554 445677665
Q ss_pred H
Q 007424 221 A 221 (604)
Q Consensus 221 a 221 (604)
+
T Consensus 218 A 218 (232)
T 3jxy_A 218 A 218 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.05 E-value=2.6e+02 Score=26.68 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhh------hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE------FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~p------y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
.++..|...|.+.+-.+...|+..|-.+..--|..|.. |.+..++++.. +.-..||+-+.+.++.|..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHH
Confidence 45666666777677777777788888777766654432 33455666654 2346899999999999985
No 153
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=22.93 E-value=1.2e+02 Score=27.42 Aligned_cols=41 Identities=34% Similarity=0.474 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHH--HHHH-hccchhhhHHHhhhhhHHHHHH
Q 007424 454 LVQIEQQQSSLLDLL--QRFI-GRSESGMQSLETRVLGLELALD 494 (604)
Q Consensus 454 l~qiE~qQs~l~~ll--Q~Fm-g~s~~~m~~Le~rV~gLE~a~d 494 (604)
|.-|=.||.+|+... |-.| .-+-=|+..|..||.++|+-+.
T Consensus 36 lsGivqQQ~nLLraIeAQQhLLqLTVWGIKqLqARvlAvEryLk 79 (123)
T 1env_A 36 LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLK 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhccc
Confidence 334778888888775 2333 4455699999999999999884
No 154
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=22.55 E-value=54 Score=31.76 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=83.2
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCch-hHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGV-RKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~-RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpD 95 (604)
.-++-+-+|+..|......++++.++.+-..|. +. +++.+ ---|..++|-+...+ -..+++.|.+-+.|++
T Consensus 73 ~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~-~~--~nWd~~D~~a~~~~g~~~~~~-----p~~~~~~l~~W~~s~~ 144 (232)
T 3jxy_A 73 PEREFQAAALDIMQKYKKHINETHIPFLEELIV-TK--SWWDSVDSIVPTFLGDIFLKH-----PELISAYIPKWIASDN 144 (232)
T ss_dssp SBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT-SS--CCHHHHHHHTTTHHHHHHHHC-----GGGGGGTHHHHHHSSC
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-cC--CChHHHHHhhHHHHHHHHHHC-----HHHHHHHHHHHhcCCc
Confidence 345566677777776666777777775544433 32 34544 222345555544433 2234455666789999
Q ss_pred hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH
Q 007424 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~ 161 (604)
.-+|+++...+ +.... ......+-++++.+.++.+-.||.+.+.+|..+.-.-++.+.+||.
T Consensus 145 ~w~rR~ai~~~--l~~~~--~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 145 IWLQRAAILFQ--LKYKQ--KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHHTT--TTCGG--GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHH--HHHHh--CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99988887553 44332 2333456678888888999999999999998777654443444443
No 155
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.46 E-value=56 Score=25.23 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=15.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHH
Q 007424 479 MQSLETRVLGLELALDEISYDL 500 (604)
Q Consensus 479 m~~Le~rV~gLE~a~deis~dl 500 (604)
+..||.||..||..|..+...|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777765544
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.68 E-value=7.3e+02 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHH
Q 007424 145 LAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGL 183 (604)
Q Consensus 145 LaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alL 183 (604)
|..++|..+... ..+...|+.+|.+++++++|++-..++
T Consensus 320 leeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 320 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 455555543322 345677888899999999999755544
No 157
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.62 E-value=2.2e+02 Score=25.12 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHH
Q 007424 446 DLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYD 499 (604)
Q Consensus 446 ~~~~ir~ql~qiE~qQs~l~~llQ~Fmg~s~~~m~~Le~rV~gLE~a~deis~d 499 (604)
|.-.+|.-+.+-.+...+.++.||+=+..-...=..|-.+++-||.+=|++=|-
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 445567788888888889999999999999999999999999999999988653
No 158
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.19 E-value=64 Score=23.94 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=14.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 007424 479 MQSLETRVLGLELALDEISYD 499 (604)
Q Consensus 479 m~~Le~rV~gLE~a~deis~d 499 (604)
|..||.||..||.-..|+=.-
T Consensus 5 l~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887776665433
No 159
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.01 E-value=8.5e+02 Score=27.00 Aligned_cols=107 Identities=9% Similarity=-0.009 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----------hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----------AFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----------~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
++--+.++...|++++..+..-...-+..+-..+... .+..++..|...+...+.......|..++..++
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I 394 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYI 394 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 3444668888899999877666665555554444321 123377777777766788888999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
...++ +-=-.|+..|++-.. +..++..++..+---+.
T Consensus 395 ~~~~~---e~R~~iL~~LL~~~~--~~~v~~~lI~~~KdeI~ 431 (596)
T 4f52_E 395 NKLDS---QGKYTLFRCLLNTSN--HSGVEAFIIQNIKNQID 431 (596)
T ss_dssp HHBCH---HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HhCCh---HHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHH
Confidence 88764 222335556665444 44577778877776553
Done!