BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007425
(604 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/433 (32%), Positives = 226/433 (52%), Gaps = 56/433 (12%)
Query: 149 WREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRVAICNAVVLARLLNATLV 208
WR P S W P P+ NGY+ V NGG+NQQR AICNAV+ AR++NATLV
Sbjct: 71 WRPSSAPRSDWPP--------PTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLV 122
Query: 209 VPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVDI 268
+P+ +S W D S F IY EHFI L D+++V ++P+ ++ + I + +
Sbjct: 123 LPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF--QIRP 180
Query: 269 PKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQ 328
P+++ +YL + + + ++L F +RLA + + QRLRCR N+HAL+F P I
Sbjct: 181 PRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIM 240
Query: 329 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAH 388
+ ++ +LR +GH +++IHLRFE+DM+A
Sbjct: 241 KLSESIVDKLRS-QGH-----------------------------FMSIHLRFEMDMLAF 270
Query: 389 SLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAA 448
+ C EE++ L KYR+ +F K E R+ G CPLTPEE L+L A
Sbjct: 271 AGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAIGKCPLTPEEVGLILRA 322
Query: 449 LGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AAL 506
+ F+ T +++A +++GG + + +L+P L +N S E S L +A+
Sbjct: 323 MRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAV 379
Query: 507 DFIGCTAANAFAMT-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWK 565
D++ C ++ F T D S ++ + G+R+YYG TIRP+++ LA IF+ +
Sbjct: 380 DYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKALAPIFIAREKGKRA 437
Query: 566 VFEQRVRKAVRQT 578
FE+ VR+ + +T
Sbjct: 438 GFEEAVRRVMLKT 450
>sp|Q54KU3|PKS25_DICDI Probable polyketide synthase 25 OS=Dictyostelium discoideum
GN=pks25 PE=3 SV=1
Length = 2380
Score = 40.0 bits (92), Expect = 0.060, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 208 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 267
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 784 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 841
Query: 268 IPKESKPSFYLKNIIPI---LLRNG 289
I SFYLK +IP RNG
Sbjct: 842 IAPHPTLSFYLKQMIPKQSQYFRNG 866
>sp|Q54KU5|PKS24_DICDI Probable polyketide synthase 24 OS=Dictyostelium discoideum
GN=pks24 PE=3 SV=1
Length = 2471
Score = 40.0 bits (92), Expect = 0.060, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 208 VVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 267
V+P F S+V ++ S I+ E+F + ++ + + + N + ++ IGS + ++
Sbjct: 789 VIPTF--STVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIE 846
Query: 268 IPKESKPSFYLKNIIPI---LLRNG 289
I SFYLK +IP RNG
Sbjct: 847 IAPHPTLSFYLKQMIPKQSQYFRNG 871
>sp|A1CQH8|UTP25_ASPCL U3 small nucleolar RNA-associated protein 25 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=utp25 PE=3 SV=1
Length = 693
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 489 SATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPN 548
A+ L P KNFSS G A AM+D QL+ + GY+ G + +
Sbjct: 181 DASLLPPLKNFSSVKLKKKLDGPAADLIPAMSDDAQQLAPYIFGYQDVLHGARNTSNSAT 240
Query: 549 KRRLAAIFVKNSTIEW--KVFEQRVRKAVRQTKHIQSRSKG----RSVYRYPRCKECMCP 602
R L AI N ++ +V + R A Q + R +G + +Y P + C+
Sbjct: 241 LRDLLAIHATNHVLKTRDRVLKNNARVAKEQDADLDLRDQGFTRPKVLYLLPTRQACVRV 300
Query: 603 TD 604
D
Sbjct: 301 VD 302
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 8/147 (5%)
Query: 74 LICFFFVVNWF--MLVRLQYHGRKTNAFVNSSSVSVKKELKKFGKGKRSQYGVYGRMLAL 131
L C+ + W L + + N V S++++ + +G+G S +G +
Sbjct: 62 LFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFG---SK 118
Query: 132 AAHALAEGQNKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRV 191
AL+ +R R P+ AS+ P + PS N+ Y + G +
Sbjct: 119 KQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFHNHQY---SPRGFTTTEST 175
Query: 192 AICNAVVLARLLNATLVVPKFMYSSVW 218
+ NAV+++ L + +Y+ ++
Sbjct: 176 DLANAVMMSFLYPVIGMFGDLVYTRIF 202
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 33.1 bits (74), Expect = 6.1, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 211 KFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAIGSVVTDVD 267
+F Y+ D +Q ++Y+E+ + + T ++ K++ KL SL + + +T +D
Sbjct: 14 EFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLD 70
>sp|A3R4N4|LT_POVKI Large T antigen OS=KI polyomavirus (isolate Stockholm 350) PE=3
SV=1
Length = 641
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 47 FLKKMKRKGEKAWYKRKRVKSLVGVIGLICFFFVVNWFMLVRLQYHGRKTNAFVNS-SSV 105
F+ R+ + YK+ K I F+ V F L ++ N F +V
Sbjct: 168 FVVHTTREKGEVLYKKLLQKYQCSFISKHAFYNTVLIFFLTPHKHRVSAINNFCKGHCTV 227
Query: 106 SVKKELKKFGKGKRSQYGVYGRMLALAAHALAEG------QNKREPKDLWREPVVPASAW 159
S F KG + YG+Y RM + E +N+ P+DL+ EP P+ +W
Sbjct: 228 SFL-----FCKGVNNPYGLYSRMCRQPFNLCEENIPGGLKENEFNPEDLFGEPKEPSLSW 282
Query: 160 MPCAD 164
A+
Sbjct: 283 NQIAN 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,761,057
Number of Sequences: 539616
Number of extensions: 9375547
Number of successful extensions: 20733
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20722
Number of HSP's gapped (non-prelim): 13
length of query: 604
length of database: 191,569,459
effective HSP length: 123
effective length of query: 481
effective length of database: 125,196,691
effective search space: 60219608371
effective search space used: 60219608371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)