Query 007425
Match_columns 604
No_of_seqs 181 out of 397
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 01:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 1E-13 3.5E-18 145.4 14.8 307 171-544 18-386 (408)
2 3zy2_A Putative GDP-fucose pro 99.0 2.6E-09 9E-14 111.8 12.4 282 173-543 6-353 (362)
3 2hhc_A NODZ, nodulation fucosy 95.8 0.16 5.4E-06 51.3 14.6 52 174-228 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 94.9 0.83 2.8E-05 50.2 17.8 81 450-535 335-418 (526)
5 1l2m_A REP protein; A+B fold, 25.6 70 0.0024 28.8 4.4 28 434-462 17-44 (118)
6 2g7j_A Putative cytoplasmic pr 23.7 32 0.0011 31.1 1.8 19 437-455 3-21 (124)
7 2eqr_A N-COR1, N-COR, nuclear 20.5 50 0.0017 25.8 2.2 19 431-449 9-27 (61)
8 3l32_A Phosphoprotein; antipar 18.6 49 0.0017 25.3 1.6 22 320-341 2-23 (45)
9 1p3q_Q VPS9P, vacuolar protein 14.5 42 0.0014 26.6 0.4 14 469-482 14-27 (54)
10 2x4k_A 4-oxalocrotonate tautom 12.8 2.1E+02 0.0072 20.7 3.9 29 177-205 5-36 (63)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.51 E-value=1e-13 Score=145.42 Aligned_cols=307 Identities=21% Similarity=0.203 Sum_probs=169.3
Q ss_pred CCCCCceEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EEeccccCCCcccCC------CCCCcccchHHHHHhcC
Q 007425 171 SGGNNGYILVTAN-G-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 238 (604)
Q Consensus 171 ~~~snGYL~V~~n-G-GLNQqR~~IcDaVaVARiLNAT----LViP~l~~ss~W~D~------S~F~DIFD~dhFI~~Lk 238 (604)
....++||+-..| | |.|.||...-.|.++|+.||.| ||||-+..-.-|.-. -.|++.||++.+-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 3567899999864 5 8999999999999999999999 999977543445443 3699999998743
Q ss_pred CCeEEeccCchhhhc-------------------------hhhhhhcc-----cccccCCCCCCChHHHH----------
Q 007425 239 PDIRMVKELPNKLQS-------------------------LDLEAIGS-----VVTDVDIPKESKPSFYL---------- 278 (604)
Q Consensus 239 ~DVrIVk~LP~~~~~-------------------------~~~~~~~~-----~~~~~~v~~~s~~~~Y~---------- 278 (604)
..|.|+.- +++.. .+...... ...........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 34445421 11100 00000000 00000000001122211
Q ss_pred -------Hhhhhhhhhc---CeEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhccCCCCCCC
Q 007425 279 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 348 (604)
Q Consensus 279 -------~~VLP~L~k~---~VI~l~~f~~RLa~d~lP~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RLR~~~~~~~~~ 348 (604)
..+-|.+.+. .-+-+..+...|+.-.-..+...+| ..|+|++.|.+.|+..++..-..... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~---~ 243 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDD---A 243 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTT---T
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccc---e
Confidence 1122334332 2233333444443222223333333 47999999999999998876532110 0
Q ss_pred CccccCCccchhhhhhhcccccCCceEEEeechhhhhhhhccccCCCchhHHHHHHHHHHhhcchhhhccccCCCCChHh
Q 007425 349 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 428 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~gkylALHLRfE~DMlA~SgC~~ggg~~E~~EL~~~R~~~~~~~~~~~k~~~~i~~~~ 428 (604)
+ .+..+ +.-...........+|+|+|+|+|-+.=+.++..|... .+...+
T Consensus 244 ~-h~r~~-~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~------------------------ 293 (408)
T 4ap5_A 244 D-RIPFQ-EDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR------------------------ 293 (408)
T ss_dssp T-TCCCC-SSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH------------------------
T ss_pred e-ecccc-hhHhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH------------------------
Confidence 0 00000 00000011112344678999999976323333333211 111111
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEEeceeccccccchhhHhhCCCccccccCCCccccccccccccccchhee
Q 007425 429 IRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDF 508 (604)
Q Consensus 429 ~R~~G~CPLTPeEvgl~L~ALGf~~~T~IYlA~geiYGG~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~sS~lAALDY 508 (604)
.+.-+++.. +-+.||||+-+. +..+..|++.+|.++.-.. ..+++.++. ...+|.||-
T Consensus 294 ------------~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq 351 (408)
T 4ap5_A 294 ------------KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQ 351 (408)
T ss_dssp ------------HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHH
T ss_pred ------------HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHH
Confidence 111222222 234699998742 4457889999998764322 233444443 345789999
Q ss_pred eeeccCceeeeCCCCCchhhhhhcccccccCCCCcc
Q 007425 509 IGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 544 (604)
Q Consensus 509 iVcl~SDVFV~t~~G~nma~lV~GhR~y~G~~~~kT 544 (604)
+||.+||+||+|.. |.|+..|.=.|-+.|+....|
T Consensus 352 ~Ic~~a~~FiGt~~-StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 352 WICAHARFFIGTSV-STFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp HHHHTEEEEEBCTT-CHHHHHHHHHHHHHTBCGGGT
T ss_pred HHHHhCCeeEeCCc-CchhHHHHHHHHhcCCCCCcc
Confidence 99999999999985 479999999999999865333
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.97 E-value=2.6e-09 Score=111.78 Aligned_cols=282 Identities=19% Similarity=0.226 Sum_probs=163.4
Q ss_pred CCCceEEEE-ecCchhhHHHHHHHHHHHHHHhcCeEEeccccCCCcccCCC---CCCcccchHHHHHhcCCCeEEecc--
Q 007425 173 GNNGYILVT-ANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVS---QFSDIYQEEHFINYLTPDIRMVKE-- 246 (604)
Q Consensus 173 ~snGYL~V~-~nGGLNQqR~~IcDaVaVARiLNATLViP~l~~ss~W~D~S---~F~DIFD~dhFI~~Lk~DVrIVk~-- 246 (604)
.+||||+-= |-|-+-+|--..--+.+.|+.||.|||||-+-.=.. .. + .|++-|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~-~~~vpf~~yF~v~~----l~~yhrvi~me~ 79 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PE-TKMIPFEFLFQVGT----VAKYTRVVTMQE 79 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SS-CEEECHHHHBCHHH----HTTTSCEECHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Cc-ccccchhheeecch----hhhhceeeeHHH
Confidence 469999885 999999999999999999999999999998642221 11 3 3888888876 3334455432
Q ss_pred ----Cchhhh-chhhhhhc----cc----ccccCCC-CCCCh---HH------------HH----------Hhhhhhh--
Q 007425 247 ----LPNKLQ-SLDLEAIG----SV----VTDVDIP-KESKP---SF------------YL----------KNIIPIL-- 285 (604)
Q Consensus 247 ----LP~~~~-~~~~~~~~----~~----~~~~~v~-~~s~~---~~------------Y~----------~~VLP~L-- 285 (604)
|=+.+- --++.++= .. .....++ |.-+| .| |- ......+
T Consensus 80 Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~ 159 (362)
T 3zy2_A 80 FTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLE 159 (362)
T ss_dssp HHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHH
T ss_pred HHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHH
Confidence 111110 00000000 00 0000111 11000 00 10 0011111
Q ss_pred ----hhcCeEEEeccCCcccCCCCch--hhhhhhhhhcccccccchhHHHHHHHHHHHHhccCCCCCCCCccccCCccch
Q 007425 286 ----LRNGVVHLLGFGNRLAFDPIPF--QLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADS 359 (604)
Q Consensus 286 ----~k~~VI~l~~f~~RLa~d~lP~--diQrLRCrvnF~ALrF~p~I~~lg~~LV~RLR~~~~~~~~~~~~~~~~~~~~ 359 (604)
.+|-|+.|++.-.. |...+. .||| -|+++++|.+.|++.|+.--..
T Consensus 160 ~~p~~~~pVlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~r------------------ 211 (362)
T 3zy2_A 160 KFPSEEYPVLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLAK------------------ 211 (362)
T ss_dssp HSCTTTCSEEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCCS------------------
T ss_pred hCCcccCceEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcCC------------------
Confidence 25789998775332 222221 4444 5899999999999998874321
Q ss_pred hhhhhhcccccCCceEEEeechhhhhhhhccccCC-CchhHHHHHHHHHHhhcchhhhccccCCCCChHh---hhcCC--
Q 007425 360 IMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFG-GGEEERQELEKYREIHFPALAHLKKTTKLPSPAE---IRSEG-- 433 (604)
Q Consensus 360 ~~~~~~~~~~~~gkylALHLRfE~DMlA~SgC~~g-gg~~E~~EL~~~R~~~~~~~~~~~k~~~~i~~~~---~R~~G-- 433 (604)
+||+||||-=.|+.-. |.+- .+. .+ .-.-+|.- ....|
T Consensus 212 -------------pyVgIHLR~G~DW~~a--C~hlk~~~-------------~~--------~lfaSPQC~Gy~~~~~~l 255 (362)
T 3zy2_A 212 -------------PFVAVHLRNDADWVRV--CEHIDTTT-------------NR--------PLFASEQCLGEGHHLGTL 255 (362)
T ss_dssp -------------SEEEEEECCCHHHHHH--HHTCCTTT-------------CC--------CCTTTHHHHCGGGTTCCC
T ss_pred -------------CeEEEEEecCCcHHHH--Hhhhcccc-------------Cc--------ccccCCcccCCcccCccc
Confidence 2999999999999876 8752 110 00 00001100 00111
Q ss_pred ---CCCCCHHH----HHHHHHHhCCCCCcEEEEEeceeccccccchhhHhhCCCccccccCCCccccccccccccccchh
Q 007425 434 ---LCPLTPEE----AVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAAL 506 (604)
Q Consensus 434 ---~CPLTPeE----vgl~L~ALGf~~~T~IYlA~geiYGG~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~sS~lAAL 506 (604)
.|==+.++ +..+++.+ +-..||||+-. ...++-|+++|+....+ +.+ +.| ..|+|
T Consensus 256 t~emClPSle~I~rqIk~~vk~~---~lksVFIATDa----~~~~~ELk~~L~~~~v~--vv~---~~p------e~a~I 317 (362)
T 3zy2_A 256 TKEICSPSKQQILEQIVEKVGSI---GAKSVFVASDK----DHMIDEINEALKPYEIE--AHR---QEP------DDMYT 317 (362)
T ss_dssp CHHHHSCCHHHHHHHHHHHHHHH---TCSEEEEEESS----CCCHHHHHHHHGGGTCC--EEC---CSS------CCHHH
T ss_pred chhccCCCHHHHHHHHHHHHHhc---CCcEEEEecCC----HHHHHHHHHHhhccCce--EEE---eCC------chhHH
Confidence 23223333 34455555 46789999974 34678899988752111 111 111 17999
Q ss_pred eeeeeccCceeeeCCCCCchhhhhhcccccccCCCCc
Q 007425 507 DFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMP 543 (604)
Q Consensus 507 DYiVcl~SDVFV~t~~G~nma~lV~GhR~y~G~~~~k 543 (604)
|-+||.+||+||+|... .|+..|.=.|--.|...++
T Consensus 318 D~~I~~~A~~FIGN~~S-SFSa~I~rERdi~G~~~~p 353 (362)
T 3zy2_A 318 SLAIMGRADLFVGNCVS-TFSHIVKRERDHAGQSPRP 353 (362)
T ss_dssp HHHHHHHSSEEEECTTC-HHHHHHHHHHHHSSSSCCC
T ss_pred HHHHHHhCCEeecCccc-cccHHHHHHHHhcCCCCCC
Confidence 99999999999999854 7999999999988854433
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=95.76 E-value=0.16 Score=51.28 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCceEEEEecCchhhHHHHHHHHHHHHHHhcCeEEeccccCCCcccCCCCCCccc
Q 007425 174 NNGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIY 228 (604)
Q Consensus 174 snGYL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~l~~ss~W~D~S~F~DIF 228 (604)
+..||.+...|||-.|=-+++.|.++|.+.|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4579999999999888888999999999999999986554 23322 2355566
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=94.92 E-value=0.83 Score=50.23 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEeceeccccccchhhHhhCCCc--cccccCCCcccc-ccccccccccchheeeeeccCceeeeCCCCCch
Q 007425 450 GFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL--VTKENLLSATEL-EPFKNFSSQLAALDFIGCTAANAFAMTDSGSQL 526 (604)
Q Consensus 450 Gf~~~T~IYlA~geiYGG~~~L~pL~~~FPnl--~tKetLas~eEL-~pF~~~sS~lAALDYiVcl~SDVFV~t~~G~nm 526 (604)
..+..+.||||+.+ ...++-+++.||+. ++.........+ ..+...+-..+.+|.++.+++|+||.|.+. |+
T Consensus 335 ~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~ 409 (526)
T 2de0_X 335 MQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QV 409 (526)
T ss_dssp SCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HH
T ss_pred cCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HH
Confidence 46778999999987 36677888899985 332222111111 111101113578999999999999998754 78
Q ss_pred hhhhhcccc
Q 007425 527 SSLVSGYRI 535 (604)
Q Consensus 527 a~lV~GhR~ 535 (604)
+.++...+.
T Consensus 410 srla~~l~~ 418 (526)
T 2de0_X 410 CRVAYEIMQ 418 (526)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 888766554
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=25.61 E-value=70 Score=28.83 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEEec
Q 007425 434 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 462 (604)
Q Consensus 434 ~CPLTPeEvgl~L~ALGf~~~T~IYlA~g 462 (604)
.||||+||+...|+.|--+. ...||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeeh
Confidence 79999999999999987554 35566544
No 6
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=23.69 E-value=32 Score=31.06 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 007425 437 LTPEEAVLMLAALGFNRKT 455 (604)
Q Consensus 437 LTPeEvgl~L~ALGf~~~T 455 (604)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998764
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.51 E-value=50 Score=25.78 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=16.9
Q ss_pred cCCCCCCCHHHHHHHHHHh
Q 007425 431 SEGLCPLTPEEAVLMLAAL 449 (604)
Q Consensus 431 ~~G~CPLTPeEvgl~L~AL 449 (604)
.+...|.||||..+|++++
T Consensus 9 r~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH
Confidence 3667899999999999998
No 8
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=18.57 E-value=49 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.8
Q ss_pred ccccchhHHHHHHHHHHHHhcc
Q 007425 320 ALQFAPKIQETGALLLRRLRKH 341 (604)
Q Consensus 320 ALrF~p~I~~lg~~LV~RLR~~ 341 (604)
|+-|+.-+.++|.++|+||++-
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4567888999999999999974
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=14.54 E-value=42 Score=26.58 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.4
Q ss_pred ccchhhHhhCCCcc
Q 007425 469 RRLGALNSLYPYLV 482 (604)
Q Consensus 469 ~~L~pL~~~FPnl~ 482 (604)
..+..|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 45788999999984
No 10
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=12.83 E-value=2.1e+02 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.8
Q ss_pred eEEEEecCchhh-HHHHHHHHH--HHHHHhcC
Q 007425 177 YILVTANGGMNQ-QRVAICNAV--VLARLLNA 205 (604)
Q Consensus 177 YL~V~~nGGLNQ-qR~~IcDaV--aVARiLNA 205 (604)
||.|..++|... |+.++++++ +++..||.
T Consensus 5 ~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~ 36 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA 36 (63)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 789999999854 588888877 45666654
Done!