Query 007425
Match_columns 604
No_of_seqs 181 out of 397
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 01:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 37.7 16 0.0011 31.0 4.5 28 434-462 17-44 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 27.0 4.3 0.00031 29.3 -0.9 26 438-463 1-30 (44)
3 d2ihoa2 d.3.1.18 (A:156-293) A 25.2 3.3 0.00024 35.8 -2.1 34 206-239 31-69 (138)
4 d1vjna_ d.157.1.4 (A:) Hypothe 21.2 71 0.0052 27.9 6.1 65 177-250 130-200 (209)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 18.7 22 0.0016 29.5 1.8 18 437-454 3-20 (112)
6 d1okga1 c.46.1.2 (A:7-162) 3-m 16.3 62 0.0045 27.7 4.3 55 405-460 40-95 (156)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 14.4 48 0.0035 25.1 2.7 24 428-452 12-35 (75)
8 d1wgla_ a.5.2.4 (A:) Toll-inte 13.3 22 0.0016 26.7 0.4 47 468-519 10-56 (59)
9 d1sfsa_ c.1.8.8 (A:) Unnamed h 12.4 46 0.0033 30.5 2.3 21 442-462 81-101 (213)
10 d1mn3a_ a.5.2.4 (A:) Vacuolar 11.9 26 0.0019 25.9 0.4 14 469-482 14-27 (54)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=37.74 E-value=16 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEEec
Q 007425 434 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 462 (604)
Q Consensus 434 ~CPLTPeEvgl~L~ALGf~~~T~IYlA~g 462 (604)
+|||||||+...|+.|=-+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 7999999999999999765554 465544
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.03 E-value=4.3 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=18.3
Q ss_pred CHHHHH--HHHHHhCCCCCcE--EEEEece
Q 007425 438 TPEEAV--LMLAALGFNRKTH--VFVAGAQ 463 (604)
Q Consensus 438 TPeEvg--l~L~ALGf~~~T~--IYlA~ge 463 (604)
||+|.. -=|.+|||+++.. .|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566643 4589999999974 5777653
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=25.21 E-value=3.3 Score=35.75 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=28.3
Q ss_pred eEEeccccCCCcccCC-----CCCCcccchHHHHHhcCC
Q 007425 206 TLVVPKFMYSSVWRDV-----SQFSDIYQEEHFINYLTP 239 (604)
Q Consensus 206 TLViP~l~~ss~W~D~-----S~F~DIFD~dhFI~~Lk~ 239 (604)
-||||...-+++|+++ ..=+.|||-|.|--..|.
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~Ka 69 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKA 69 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHH
Confidence 4899999999999994 355789999999876653
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.17 E-value=71 Score=27.88 Aligned_cols=65 Identities=23% Similarity=0.451 Sum_probs=40.2
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHHhcCeEEeccccCCCcccC-CCCCCcccchHHHHHhcCC-----CeEEeccCchh
Q 007425 177 YILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRD-VSQFSDIYQEEHFINYLTP-----DIRMVKELPNK 250 (604)
Q Consensus 177 YL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~l~~ss~W~D-~S~F~DIFD~dhFI~~Lk~-----DVrIVk~LP~~ 250 (604)
.+++.+.|.. .+.--+|+-+|+.|++-.|||-= |+. ...| ++=..|.|++.++. ++-.+.++|++
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 4555554432 23456889999999999999962 332 2233 45567889888764 33344455544
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=18.71 E-value=22 Score=29.46 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 007425 437 LTPEEAVLMLAALGFNRK 454 (604)
Q Consensus 437 LTPeEvgl~L~ALGf~~~ 454 (604)
|-|.||+.+|+.-||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999765
No 6
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=16.32 E-value=62 Score=27.69 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=33.3
Q ss_pred HHHHhhcchhhhccccCCCCChHhhhcCCCCCC-CHHHHHHHHHHhCCCCCcEEEEE
Q 007425 405 KYREIHFPALAHLKKTTKLPSPAEIRSEGLCPL-TPEEAVLMLAALGFNRKTHVFVA 460 (604)
Q Consensus 405 ~~R~~~~~~~~~~~k~~~~i~~~~~R~~G~CPL-TPeEvgl~L~ALGf~~~T~IYlA 460 (604)
.|++.|-|+-..+. -.+..+.......|.=|| +|++..-.|+++|.+++|.|-|=
T Consensus 40 ~Y~~gHIPGA~~~d-~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 40 QYAKEHVKSAIRAD-VDTNLSKLVPTSTARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp HHHHCEETTCEECC-TTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred HHHHcCCCCCeEcC-HHHhcccccCCCCCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 37777777533221 011122222233444344 79999999999999999987763
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=14.38 E-value=48 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhCCC
Q 007425 428 EIRSEGLCPLTPEEAVLMLAALGFN 452 (604)
Q Consensus 428 ~~R~~G~CPLTPeEvgl~L~ALGf~ 452 (604)
-.+..|.. ++++|+.-+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 44566766 9999999999999996
No 8
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.34 E-value=22 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=26.7
Q ss_pred cccchhhHhhCCCccccccCCCccccccccccccccchheeeeeccCceeee
Q 007425 468 TRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAM 519 (604)
Q Consensus 468 ~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~sS~lAALDYiVcl~SDVFV~ 519 (604)
+..+..|+.|||++... .+- .-|.. +....-+|+|=..-+.-+.|-|
T Consensus 10 Ee~i~~LkeMFP~~D~~-vI~--~VL~a--~~G~vd~aid~LL~Msd~~~gp 56 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQE-VIR--SVLEA--QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp HHHHHHHHHHCSSSCHH-HHH--HHHTT--TTTCHHHHHHHHHHSSCCCCSC
T ss_pred HHHHHHHHHHCCCCCHH-HHH--HHHHH--cCCCHHHHHHHHHhcCCCCcCC
Confidence 45689999999998532 211 01211 2234457777666665555543
No 9
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.37 E-value=46 Score=30.50 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCCcEEEEEec
Q 007425 442 AVLMLAALGFNRKTHVFVAGA 462 (604)
Q Consensus 442 vgl~L~ALGf~~~T~IYlA~g 462 (604)
+.-.=++||||..|.||++--
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve 101 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIE 101 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECC
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 444667899999999999864
No 10
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.88 E-value=26 Score=25.88 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.5
Q ss_pred ccchhhHhhCCCcc
Q 007425 469 RRLGALNSLYPYLV 482 (604)
Q Consensus 469 ~~L~pL~~~FPnl~ 482 (604)
..++.|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999874
Done!