BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007426
         (604 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2
          Length = 1268

 Score = 36.2 bits (82), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 25/235 (10%)

Query: 121  TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
            T+ + ++R  +H+LC P+  SL      +   AA+CL A         A D  V+    +
Sbjct: 985  TSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLA-------NMAVDRSVSSSLSD 1037

Query: 181  VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL-- 238
               AL      + S  G  ++  +H+AL+  +  +L     L +L        +  RL  
Sbjct: 1038 ARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDD 1097

Query: 239  -------LAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKR 291
                   +  Q L  LMK + P +++    L  EG  +  +D++  V    L+ L +A++
Sbjct: 1098 RVYAMCQIKSQPLVHLMKMIHP-NLYRIDRLTDEGAVHV-NDRI--VPQPPLQKL-SAEK 1152

Query: 292  IAAENGPKFEKGSGSVIGSNFGRDHNRRRNLLNGDNRS--PSSMS--PESQTLNS 342
            +  E     + GS   I    G D+N   ++L   N +  P  M+  PE  TL+S
Sbjct: 1153 LTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSS 1207


>sp|Q61IR6|MED14_CAEBR Mediator of RNA polymerase II transcription subunit 14
            OS=Caenorhabditis briggsae GN=rgr-1 PE=3 SV=3
          Length = 1540

 Score = 35.8 bits (81), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)

Query: 225  LNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELI--------------IEGMENC 270
            +NAGP     ++ + A+ + +      DPR   + L ++              I+G   C
Sbjct: 1059 INAGPTMWKPEQFMDAVDVPH----EDDPRMKITSLPILMTHDTIIKACDFQEIDGHVTC 1114

Query: 271  QSDQMAYVKGASLEALQTAKRIA--AENGPKFEKGSGSVIGSNFGRDHNR-RRNLLNGDN 327
              D+  Y       AL T +R++  A+ GP     SG V   +   D+ R +   LNGD 
Sbjct: 1115 PLDEYLYSISYLQRALLTLERMSPRAQQGPANNLFSGYVTVVDAKPDYVRFKATQLNGDG 1174

Query: 328  RSPSSM-------SPESQTLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNR 372
             + ++M        PE+ TL    EYD    S  +   L+  + Y  + V R
Sbjct: 1175 TNATAMVYYKIYLCPEAMTLKIHIEYDEGTNSEATPKNLTALSTYFEKVVFR 1226


>sp|P73162|ACKA_SYNY3 Acetate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
           GN=ackA PE=3 SV=1
          Length = 413

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 79  VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPL 138
           VPQI    T   +T+ + A  +P+ QA + +   I RYG   T+ +   +     L KPL
Sbjct: 150 VPQIAVFDTAFHRTIPTPAAEYPIPQAWTNL--GIRRYGFHGTSHKYCAQKTAEILGKPL 207

Query: 139 SDSLL-----GSQESLTA 151
           +D  L     G+  SLTA
Sbjct: 208 ADLKLITCHIGNGASLTA 225


>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana
           GN=SP2L PE=2 SV=1
          Length = 821

 Score = 32.7 bits (73), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 130 IIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMV---NKVCQNVAGALE 186
           ++    KPL +++    +SL +GAA+C+  ++DS     A++  V    K+C  ++  L 
Sbjct: 165 LVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDS-----ATEPPVAAFQKLCPRISKLLN 219

Query: 187 EKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLN 245
             +  T  S + +V +L++     V A A   ++S L  ++   G  N   R  A  +L 
Sbjct: 220 SPNYITKASLLPVVGSLSQ-----VGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLI 274

Query: 246 FLMKSLDPRSIFSE-LELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295
            L  ++   S+ ++  +  +  +E C+ D++  V+ +  EAL   K IA +
Sbjct: 275 SL--AVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGK 323


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,600,899
Number of Sequences: 539616
Number of extensions: 9172763
Number of successful extensions: 25389
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 25377
Number of HSP's gapped (non-prelim): 34
length of query: 604
length of database: 191,569,459
effective HSP length: 123
effective length of query: 481
effective length of database: 125,196,691
effective search space: 60219608371
effective search space used: 60219608371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)