Query 007426
Match_columns 604
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 23:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 98.4 1.8E-05 3.9E-10 92.9 20.1 267 22-301 325-601 (1075)
2 PRK13800 putative oxidoreducta 97.8 0.00067 1.4E-08 79.0 17.7 221 17-289 632-865 (897)
3 PF12348 CLASP_N: CLASP N term 97.7 0.00093 2E-08 64.1 13.8 174 59-251 23-208 (228)
4 PF12348 CLASP_N: CLASP N term 97.7 0.0011 2.3E-08 63.7 14.0 163 17-192 18-193 (228)
5 KOG0213 Splicing factor 3b, su 97.5 0.0015 3.3E-08 75.2 14.4 234 6-256 715-961 (1172)
6 KOG1242 Protein containing ada 97.4 0.016 3.5E-07 65.4 19.8 258 19-292 147-446 (569)
7 PRK13800 putative oxidoreducta 97.2 0.0071 1.5E-07 70.7 16.0 219 18-288 664-896 (897)
8 KOG2171 Karyopherin (importin) 97.2 0.038 8.2E-07 66.1 21.8 244 32-287 106-414 (1075)
9 PRK09687 putative lyase; Provi 96.9 0.045 9.7E-07 56.3 16.9 202 14-269 30-234 (280)
10 KOG1824 TATA-binding protein-i 96.6 0.046 9.9E-07 64.8 15.0 230 22-274 667-907 (1233)
11 PF01602 Adaptin_N: Adaptin N 96.5 0.026 5.7E-07 60.0 12.1 219 4-251 114-335 (526)
12 KOG1824 TATA-binding protein-i 96.5 0.087 1.9E-06 62.6 16.8 198 58-267 450-656 (1233)
13 PRK09687 putative lyase; Provi 96.5 0.3 6.4E-06 50.4 19.1 211 18-287 66-278 (280)
14 PLN03200 cellulose synthase-in 96.5 0.12 2.6E-06 65.9 18.9 266 19-305 543-823 (2102)
15 PF12460 MMS19_C: RNAPII trans 96.0 1.7 3.7E-05 46.8 22.3 242 20-267 111-411 (415)
16 PF05004 IFRD: Interferon-rela 96.0 0.19 4.2E-06 52.5 14.7 106 9-117 45-162 (309)
17 KOG2023 Nuclear transport rece 95.9 0.098 2.1E-06 60.4 13.2 251 19-286 141-458 (885)
18 KOG1242 Protein containing ada 95.9 0.33 7.1E-06 55.2 17.1 232 4-254 213-449 (569)
19 PF10508 Proteasom_PSMB: Prote 95.8 0.89 1.9E-05 50.4 19.6 223 7-257 80-327 (503)
20 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.018 3.9E-07 51.1 4.6 79 23-106 3-88 (97)
21 COG5181 HSH155 U2 snRNP splice 95.5 0.059 1.3E-06 61.8 9.5 234 8-256 522-766 (975)
22 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.2 4.3E-06 44.5 10.1 91 194-290 6-96 (97)
23 PF01602 Adaptin_N: Adaptin N 95.2 0.86 1.9E-05 48.8 16.6 242 9-286 84-328 (526)
24 PF13513 HEAT_EZ: HEAT-like re 94.9 0.0063 1.4E-07 47.0 -0.3 54 58-113 2-55 (55)
25 PF08167 RIX1: rRNA processing 94.8 1.2 2.6E-05 42.5 14.7 109 170-287 19-139 (165)
26 PLN03200 cellulose synthase-in 94.8 1.3 2.8E-05 57.0 18.8 207 19-252 459-683 (2102)
27 cd00020 ARM Armadillo/beta-cat 94.6 0.2 4.4E-06 41.8 8.1 109 134-248 8-119 (120)
28 KOG2023 Nuclear transport rece 94.5 0.42 9.1E-06 55.5 12.5 249 23-287 372-687 (885)
29 PF12460 MMS19_C: RNAPII trans 94.3 1.4 2.9E-05 47.5 15.3 191 42-248 1-218 (415)
30 PTZ00429 beta-adaptin; Provisi 94.1 11 0.00023 44.7 22.9 258 7-295 143-434 (746)
31 PF05536 Neurochondrin: Neuroc 93.9 3 6.5E-05 47.2 17.5 240 5-258 3-270 (543)
32 PF10508 Proteasom_PSMB: Prote 93.4 5.4 0.00012 44.4 18.3 217 10-249 6-231 (503)
33 PF13646 HEAT_2: HEAT repeats; 92.2 0.86 1.9E-05 37.1 7.8 83 180-286 3-87 (88)
34 PF02985 HEAT: HEAT repeat; I 92.2 0.3 6.5E-06 34.5 4.4 30 217-250 1-30 (31)
35 COG5215 KAP95 Karyopherin (imp 92.1 5.1 0.00011 46.5 15.9 254 22-287 110-433 (858)
36 KOG2032 Uncharacterized conser 91.8 15 0.00032 41.9 18.9 261 15-289 189-529 (533)
37 KOG0166 Karyopherin (importin) 91.4 14 0.00031 42.1 18.4 263 7-297 155-442 (514)
38 PTZ00429 beta-adaptin; Provisi 91.3 26 0.00057 41.5 21.1 156 9-193 37-196 (746)
39 PF13646 HEAT_2: HEAT repeats; 90.6 2.2 4.7E-05 34.7 8.6 86 136-245 2-88 (88)
40 cd00020 ARM Armadillo/beta-cat 88.9 1.9 4E-05 36.1 7.1 106 177-287 8-116 (120)
41 smart00802 UME Domain in UVSB 88.1 1.5 3.2E-05 40.0 6.3 72 43-118 14-86 (107)
42 COG1413 FOG: HEAT repeat [Ener 87.6 14 0.0003 37.9 13.7 107 26-163 29-136 (335)
43 PF13513 HEAT_EZ: HEAT-like re 87.6 0.61 1.3E-05 35.9 3.1 53 234-287 1-53 (55)
44 KOG2933 Uncharacterized conser 87.3 5.8 0.00013 42.9 11.0 150 60-229 105-261 (334)
45 COG5181 HSH155 U2 snRNP splice 87.2 2 4.3E-05 50.0 8.1 116 18-142 293-408 (975)
46 KOG0213 Splicing factor 3b, su 87.1 2.9 6.2E-05 49.7 9.2 111 23-142 493-603 (1172)
47 KOG0915 Uncharacterized conser 86.4 17 0.00037 46.1 15.5 224 27-273 1218-1455(1702)
48 KOG1240 Protein kinase contain 85.9 18 0.0004 45.0 15.3 223 42-288 424-682 (1431)
49 KOG0166 Karyopherin (importin) 84.7 15 0.00033 41.9 13.2 240 9-273 114-379 (514)
50 PF10363 DUF2435: Protein of u 83.7 7.3 0.00016 34.5 8.3 60 54-116 14-73 (92)
51 PF08064 UME: UME (NUC010) dom 83.4 3.7 8.1E-05 36.8 6.5 70 45-118 16-86 (107)
52 PF12717 Cnd1: non-SMC mitotic 81.8 11 0.00025 35.9 9.5 90 58-163 3-93 (178)
53 PF12717 Cnd1: non-SMC mitotic 81.3 21 0.00045 34.2 11.1 112 102-273 4-116 (178)
54 KOG1248 Uncharacterized conser 81.1 95 0.0021 38.9 18.5 237 11-260 660-909 (1176)
55 KOG2956 CLIP-associating prote 80.1 69 0.0015 36.7 15.9 197 6-226 285-500 (516)
56 PF12719 Cnd3: Nuclear condens 79.8 79 0.0017 32.7 18.5 153 29-193 10-169 (298)
57 PF13251 DUF4042: Domain of un 79.7 16 0.00034 36.4 9.8 158 23-206 3-176 (182)
58 KOG0211 Protein phosphatase 2A 78.6 1.6E+02 0.0034 35.6 19.0 172 99-292 492-665 (759)
59 TIGR02270 conserved hypothetic 78.2 36 0.00078 37.6 13.0 115 135-286 88-202 (410)
60 KOG1059 Vesicle coat complex A 77.9 47 0.001 39.8 14.2 183 55-280 156-354 (877)
61 cd00197 VHS_ENTH_ANTH VHS, ENT 76.9 22 0.00048 31.5 9.1 68 218-290 39-114 (115)
62 PF12074 DUF3554: Domain of un 76.2 1.1E+02 0.0023 32.2 16.8 78 60-144 36-114 (339)
63 KOG0915 Uncharacterized conser 76.1 31 0.00067 44.0 12.8 164 57-253 1145-1310(1702)
64 KOG0803 Predicted E3 ubiquitin 75.8 87 0.0019 39.8 16.5 271 5-294 39-377 (1312)
65 KOG1241 Karyopherin (importin) 72.6 11 0.00025 44.7 7.8 110 173-286 316-430 (859)
66 PF10363 DUF2435: Protein of u 72.5 5.1 0.00011 35.5 4.0 73 8-84 4-84 (92)
67 KOG0212 Uncharacterized conser 71.1 1.7E+02 0.0038 34.5 16.2 198 10-227 7-219 (675)
68 KOG0168 Putative ubiquitin fus 70.7 41 0.00088 41.0 11.6 159 4-179 211-378 (1051)
69 COG1413 FOG: HEAT repeat [Ener 70.0 82 0.0018 32.3 12.5 81 38-149 72-153 (335)
70 PF12765 Cohesin_HEAT: HEAT re 69.9 3.6 7.9E-05 31.5 2.1 26 83-110 17-42 (42)
71 PF12231 Rif1_N: Rap1-interact 69.6 1.7E+02 0.0036 31.6 19.3 207 39-284 128-345 (372)
72 cd08050 TAF6 TATA Binding Prot 69.1 27 0.00059 37.3 9.2 84 194-278 236-325 (343)
73 KOG2933 Uncharacterized conser 68.8 42 0.0009 36.6 10.3 109 175-288 87-196 (334)
74 PF10274 ParcG: Parkin co-regu 67.9 8.9 0.00019 38.3 4.9 76 34-114 31-108 (183)
75 KOG1060 Vesicle coat complex A 66.9 87 0.0019 38.1 13.2 220 3-267 153-434 (968)
76 PF10350 DUF2428: Putative dea 66.8 1.6E+02 0.0034 30.2 15.0 164 60-235 64-255 (255)
77 PF14500 MMS19_N: Dos2-interac 66.8 1.6E+02 0.0035 30.6 13.9 186 9-221 44-255 (262)
78 PF07571 DUF1546: Protein of u 66.6 19 0.00042 31.7 6.3 60 58-117 21-80 (92)
79 KOG1967 DNA repair/transcripti 66.4 27 0.0006 42.5 9.2 118 174-293 907-1026(1030)
80 PF08506 Cse1: Cse1; InterPro 65.7 9.7 0.00021 41.3 5.1 139 8-157 214-370 (370)
81 KOG1241 Karyopherin (importin) 62.7 2E+02 0.0044 34.9 15.0 198 57-293 653-857 (859)
82 KOG1820 Microtubule-associated 62.0 1.6E+02 0.0036 35.7 14.5 187 42-252 255-446 (815)
83 KOG4653 Uncharacterized conser 61.4 2.5E+02 0.0054 34.7 15.5 217 44-289 728-965 (982)
84 KOG0211 Protein phosphatase 2A 60.1 2.4E+02 0.0052 34.1 15.3 255 7-283 158-419 (759)
85 PF04510 DUF577: Family of unk 59.8 23 0.00049 35.5 6.0 137 3-147 2-148 (174)
86 PF02985 HEAT: HEAT repeat; I 58.7 19 0.00041 25.3 3.9 31 85-117 1-31 (31)
87 PF04003 Utp12: Dip2/Utp12 Fam 57.1 11 0.00023 32.9 3.0 87 25-113 13-103 (110)
88 KOG1943 Beta-tubulin folding c 55.6 3.7E+02 0.0079 33.9 15.9 254 15-287 591-877 (1133)
89 cd08050 TAF6 TATA Binding Prot 55.2 36 0.00079 36.4 7.1 73 42-114 260-339 (343)
90 KOG2137 Protein kinase [Signal 54.5 1.4E+02 0.0031 35.6 12.0 72 83-163 388-459 (700)
91 KOG0212 Uncharacterized conser 54.1 71 0.0015 37.4 9.4 154 133-298 4-161 (675)
92 PF08767 CRM1_C: CRM1 C termin 53.7 84 0.0018 33.3 9.4 78 41-118 68-152 (319)
93 KOG1820 Microtubule-associated 51.8 1.8E+02 0.004 35.3 12.7 139 145-295 307-447 (815)
94 KOG1062 Vesicle coat complex A 51.7 4.2E+02 0.009 32.6 15.2 124 17-163 324-452 (866)
95 PF11919 DUF3437: Domain of un 51.1 49 0.0011 29.6 6.1 57 235-293 4-60 (90)
96 PRK09169 hypothetical protein; 50.6 7.9E+02 0.017 33.6 18.4 100 11-118 127-235 (2316)
97 PF03378 CAS_CSE1: CAS/CSE pro 50.5 2.4E+02 0.0051 31.6 12.6 194 59-267 42-247 (435)
98 PF00790 VHS: VHS domain; Int 50.5 72 0.0016 29.6 7.5 76 213-293 39-120 (140)
99 PF07571 DUF1546: Protein of u 49.6 63 0.0014 28.5 6.6 63 148-212 21-83 (92)
100 PF12530 DUF3730: Protein of u 48.9 2E+02 0.0044 29.0 10.9 123 13-148 9-137 (234)
101 PF08167 RIX1: rRNA processing 47.4 82 0.0018 30.2 7.5 120 41-163 22-144 (165)
102 PF08064 UME: UME (NUC010) dom 45.6 1.7E+02 0.0036 26.4 8.7 68 195-268 35-102 (107)
103 KOG2842 Interferon-related pro 45.5 3.8E+02 0.0082 30.4 12.9 207 59-295 76-303 (427)
104 PF11701 UNC45-central: Myosin 44.9 2.6E+02 0.0057 26.6 10.5 115 144-270 16-136 (157)
105 PF11864 DUF3384: Domain of un 44.7 4.8E+02 0.01 29.0 18.0 215 22-268 6-223 (464)
106 PF14664 RICTOR_N: Rapamycin-i 42.8 4.9E+02 0.011 28.5 13.5 217 16-248 35-268 (371)
107 KOG2022 Nuclear transport rece 41.7 3.6E+02 0.0077 33.5 12.8 163 54-270 477-644 (982)
108 smart00802 UME Domain in UVSB 41.4 2.1E+02 0.0045 26.3 8.8 90 176-268 11-102 (107)
109 PF03224 V-ATPase_H_N: V-ATPas 40.3 99 0.0022 32.1 7.4 185 41-241 56-262 (312)
110 cd03561 VHS VHS domain family; 40.3 2.3E+02 0.005 26.1 9.1 79 213-296 34-117 (133)
111 KOG2274 Predicted importin 9 [ 40.2 5.9E+02 0.013 31.8 14.3 209 46-292 7-231 (1005)
112 KOG2259 Uncharacterized conser 38.6 2.2E+02 0.0048 34.3 10.3 245 10-290 200-474 (823)
113 KOG4199 Uncharacterized conser 38.6 89 0.0019 34.9 6.9 118 12-136 248-382 (461)
114 KOG2160 Armadillo/beta-catenin 37.8 6E+02 0.013 28.1 14.4 100 12-118 89-196 (342)
115 PF05804 KAP: Kinesin-associat 37.7 5.5E+02 0.012 30.9 13.5 189 2-238 452-658 (708)
116 PF05004 IFRD: Interferon-rela 37.0 5.4E+02 0.012 27.3 15.2 125 170-295 123-261 (309)
117 PF12765 Cohesin_HEAT: HEAT re 35.6 52 0.0011 25.3 3.4 40 244-286 3-42 (42)
118 KOG2549 Transcription initiati 35.0 1.2E+02 0.0027 35.3 7.6 82 170-251 233-329 (576)
119 PF10274 ParcG: Parkin co-regu 34.7 5E+02 0.011 26.3 11.6 126 166-296 27-169 (183)
120 KOG0392 SNF2 family DNA-depend 34.3 46 0.001 42.0 4.4 112 1-115 807-925 (1549)
121 KOG2259 Uncharacterized conser 33.3 2.8E+02 0.0062 33.4 10.1 209 56-287 211-435 (823)
122 KOG4224 Armadillo repeat prote 32.1 6.1E+02 0.013 29.1 11.9 254 4-286 168-441 (550)
123 PF14500 MMS19_N: Dos2-interac 31.5 94 0.002 32.3 5.6 62 224-286 3-64 (262)
124 PF11865 DUF3385: Domain of un 30.4 4.7E+02 0.01 25.2 9.7 146 83-249 9-157 (160)
125 PF01417 ENTH: ENTH domain; I 30.1 3.4E+02 0.0074 24.6 8.3 71 218-289 41-119 (125)
126 PF04826 Arm_2: Armadillo-like 28.5 2.7E+02 0.0059 29.0 8.3 132 16-162 23-163 (254)
127 PF12074 DUF3554: Domain of un 27.9 1.2E+02 0.0027 31.6 5.8 78 12-94 169-254 (339)
128 KOG1077 Vesicle coat complex A 27.2 9.1E+02 0.02 29.8 12.8 108 80-208 107-220 (938)
129 KOG1248 Uncharacterized conser 26.8 1.5E+03 0.032 29.2 19.5 197 41-252 94-321 (1176)
130 PF08144 CPL: CPL (NUC119) dom 26.8 70 0.0015 30.7 3.5 41 2-52 19-65 (148)
131 KOG0889 Histone acetyltransfer 26.3 2.8E+02 0.0062 38.8 9.5 114 89-210 1234-1349(3550)
132 smart00638 LPD_N Lipoprotein N 25.7 9.9E+02 0.021 26.9 16.2 222 26-289 312-543 (574)
133 CHL00114 psbX photosystem II p 25.5 31 0.00067 27.1 0.7 26 572-597 10-35 (39)
134 PF14910 MMS22L_N: S-phase gen 25.4 6.2E+02 0.014 30.6 11.2 148 132-292 487-655 (704)
135 KOG1967 DNA repair/transcripti 25.0 1.5E+02 0.0033 36.6 6.4 108 5-116 910-1025(1030)
136 PF00514 Arm: Armadillo/beta-c 22.9 2.3E+02 0.005 20.7 4.9 27 218-248 14-40 (41)
137 TIGR02270 conserved hypothetic 22.5 1E+03 0.022 26.5 11.8 55 88-160 151-205 (410)
138 KOG2062 26S proteasome regulat 22.2 4.2E+02 0.0092 32.5 9.1 166 88-290 554-728 (929)
139 TIGR02106 cyd_oper_ybgT cyd op 21.8 73 0.0016 23.8 1.9 26 572-597 4-29 (30)
140 PF01347 Vitellogenin_N: Lipop 21.5 4.6E+02 0.0099 29.6 9.0 158 106-286 414-584 (618)
141 PF14914 LRRC37AB_C: LRRC37A/B 21.0 82 0.0018 31.1 2.7 30 82-111 28-57 (154)
142 PLN03076 ARF guanine nucleotid 20.8 7.2E+02 0.016 33.1 11.4 170 75-251 11-210 (1780)
143 KOG2062 26S proteasome regulat 20.8 4.8E+02 0.01 32.0 9.1 61 216-286 588-648 (929)
144 PF13251 DUF4042: Domain of un 20.0 8.9E+02 0.019 24.2 13.2 124 19-164 53-176 (182)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.8e-05 Score=92.94 Aligned_cols=267 Identities=13% Similarity=0.121 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHhhcCCCC-hhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCC
Q 007426 22 SRKSAMKALKSYVKDLDSKA-IPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGS 99 (604)
Q Consensus 22 T~~iA~~eLesiak~Ld~dt-lP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS 99 (604)
.+.+|...|+..+-.|.++. +|+++..+..- ..++-.-|+-++--++.++.=-++.+.++|++||..|+.-|.|+.
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph-- 402 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH-- 402 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC--
Confidence 78999999999999999766 78888777654 233233477778888888777778899999999999999999997
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccc--hhhHHHHHHHHHHhccCCCCCCCHHHHH--
Q 007426 100 FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE--SLTAGAALCLKALVDSDNWRFASDEMVN-- 175 (604)
Q Consensus 100 ~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe--~vQsGAALCLAAlVEs~nwr~Ap~elv~-- 175 (604)
..||.||-+++|.|+--+- |. -..-.+..+-|+.-.++...+ -||+-||.||-..-|. .+.+.+.
T Consensus 403 prVr~AA~naigQ~stdl~-p~-----iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-----~~~~~l~pY 471 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQ-PE-----IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-----CDKSILEPY 471 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhc-HH-----HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-----CcHHHHHHH
Confidence 5699999999999995432 11 122245666666666665554 4799999888777774 3555444
Q ss_pred --HHHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 176 --KVCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 176 --rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
.+..+..+.|..++.+-. .-+..++++|..-..-+.+|-..+++....||..+...+.-..|-=-.|-+..|+..+
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence 455556677777776665 5788888888888888899999999999999997654556666766689999999999
Q ss_pred CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhcCCCccc
Q 007426 252 DPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFE 301 (604)
Q Consensus 252 d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~~g~~~~ 301 (604)
+++-.......+|+.+=.-+.+-+-.=+-.-.-++..|-.++.--|..|.
T Consensus 552 Gke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~ 601 (1075)
T KOG2171|consen 552 GKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFA 601 (1075)
T ss_pred hhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhH
Confidence 87777767777887765554554444444455678889988877654443
No 2
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.80 E-value=0.00067 Score=79.04 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=110.3
Q ss_pred cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426 17 DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS 96 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs 96 (604)
+.|++.|+.|+..|-.+- ++..+|..+..+.|.+ ..||..++.-|..+..... .. ..++..|.++
T Consensus 632 D~d~~VR~~Av~~L~~~~---~~~~~~~L~~aL~D~d---~~VR~~Aa~aL~~l~~~~~-----~~----~~L~~~L~~~ 696 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT---PPGFGPALVAALGDGA---AAVRRAAAEGLRELVEVLP-----PA----PALRDHLGSP 696 (897)
T ss_pred CCCHHHHHHHHHHHhhhc---chhHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhccC-----ch----HHHHHHhcCC
Confidence 557788888888887764 4556777776664333 3478888777766643221 11 2344445554
Q ss_pred CCChhhHHHHHHHHHHHH--------hhcCCCCCccccchhhHHhhh-----chhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 97 AGSFPLQQACSRVVPAIA--------RYGIDPTTPEDKKRHIIHSLC-----KPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 97 dSS~~vR~AC~kvv~ALA--------ry~idp~~~~~~~~~ii~sl~-----KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+ ..||.+.+++.+.+. ..+.|+.. .--...+..|. .+|..+|..++..|...+|--|+.+=+.
T Consensus 697 d--~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~--~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 697 D--PVVRAAALDVLRALRAGDAALFAAALGDPDH--RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred C--HHHHHHHHHHHHhhccCCHHHHHHHhcCCCH--HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 4 236776666665543 11111100 00000000110 1233333333334444444444333211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426 164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM 243 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea 243 (604)
.+ ...+.+..+|+++. ...-..++.+|.+.+.. ..++..++..|+ .+||+.|++|+++
T Consensus 773 -----~~-----~~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~----d~d~~VR~~Aa~a 830 (897)
T PRK13800 773 -----GA-----PAGDAVRALTGDPD--PLVRAAALAALAELGCP------PDDVAAATAALR----ASAWQVRQGAARA 830 (897)
T ss_pred -----cc-----hhHHHHHHHhcCCC--HHHHHHHHHHHHhcCCc------chhHHHHHHHhc----CCChHHHHHHHHH
Confidence 00 00233445555543 11233333444443211 112233455565 6899999999999
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 244 LNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 244 L~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
|..+- . .. -...++..| -|+-+.||.++.+||-.|
T Consensus 831 L~~l~-~--~~----a~~~L~~~L----~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 831 LAGAA-A--DV----AVPALVEAL----TDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHhcc-c--cc----hHHHHHHHh----cCCCHHHHHHHHHHHhcc
Confidence 98752 1 11 123344444 588999999999999877
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.68 E-value=0.00093 Score=64.10 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHHh-----CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh
Q 007426 59 SGEYTISLYEVLARVH-----GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS 133 (604)
Q Consensus 59 vRke~I~Lle~LArvH-----G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s 133 (604)
.|.++|.-+..+..-| ...++++|.+++..|++.+.|.-|.+ ++.|| .++..|+.++... -...+..
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v-~~~A~-~~l~~l~~~l~~~------~~~~~~~ 94 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKV-SKTAC-QLLSDLARQLGSH------FEPYADI 94 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---H-HHHHH-HHHHHHHHHHGGG------GHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHH-HHHHH-HHHHHHHHHHhHh------HHHHHHH
Confidence 5777888788887777 22355666677788999999998776 67777 6777888665422 2334667
Q ss_pred hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHH-HHHHHHhhcCCccchh-hHHHHHHHHHHhhh---h
Q 007426 134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKV-CQNVAGALEEKSTQTN-SHMGLVMALAKHNA---L 208 (604)
Q Consensus 134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rl-c~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~---~ 208 (604)
++.+|++.++..++.+..-|.-||.++++.. + ...++ ...+..++++|+-+.+ .-+..+..+....+ .
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-----~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESC-----S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHC-----C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 8899999999999999999999999999963 2 22344 4556667888887665 23333333333333 3
Q ss_pred HHHHhH--HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 209 IVEAYA--RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 209 iiea~g--~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
.+...+ ..+++.+..+|. ..|-..|++|-+++..+..+.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~----D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLS----DADPEVREAARECLWALYSHF 208 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHT----SS-HHHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHC
Confidence 333333 568888888888 579999999999999998665
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.67 E-value=0.0011 Score=63.71 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=112.5
Q ss_pred cCCchhHHHHHHHHHHHHhhc-CCCChhHHHhhhccC--------CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHH
Q 007426 17 DKDADSRKSAMKALKSYVKDL-DSKAIPLFLAQVSET--------KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMT 87 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~L-d~dtlP~FLscV~dt--------d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIms 87 (604)
+.|=+.|.-|+..|+++++.- ..+..+.|+.+|.+. .+.-+.+-+.++.+++.|+..=|..+-||+..++.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 347888899999999999987 445567776666521 22225688999999999999999999999999999
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhhcC-CCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426 88 TITKTLASSAGSFPLQQACSRVVPAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW 166 (604)
Q Consensus 88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw 166 (604)
.+++++.|+.. .+++++..++-+|..++. .+ ..+..-|..++.+++..+-..++.||..+++..++
T Consensus 98 ~Ll~~~~~~~~--~i~~~a~~~L~~i~~~~~~~~-----------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 98 PLLKKLGDSKK--FIREAANNALDAIIESCSYSP-----------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHGGG---H--HHHHHHHHHHHHHHTTS-H-------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHccccH--HHHHHHHHHHHHHHHHCCcHH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 99999999763 479999999999997753 11 22356666777888888999999999999996331
Q ss_pred ---CCCCHHHHHHHHHHHHHhhcCCccch
Q 007426 167 ---RFASDEMVNKVCQNVAGALEEKSTQT 192 (604)
Q Consensus 167 ---r~Ap~elv~rlc~Rv~kaL~~ks~qt 192 (604)
.......+..+.+-+.+.|.++....
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~V 193 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEV 193 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHH
Confidence 01122345778999999999876444
No 5
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.51 E-value=0.0015 Score=75.24 Aligned_cols=234 Identities=16% Similarity=0.256 Sum_probs=160.5
Q ss_pred ChHHHHHHhhhcCCch-hHHHHHHHHHHHHhhcCCCCh-----hHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426 6 SPILRQELANLDKDAD-SRKSAMKALKSYVKDLDSKAI-----PLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV 79 (604)
Q Consensus 6 sp~~rqeL~KLs~DRD-T~~iA~~eLesiak~Ld~dtl-----P~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia 79 (604)
+|.|-.-+..|--|+. -|++.++-.++|+-.|-.-.| -.++.-|+-+-..+...-.-.+--|++++..-|.-+-
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~k 794 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVK 794 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccc
Confidence 4666666667763444 467899999999988854333 2333333333222222233567789999999999999
Q ss_pred ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chh--hHHHHHH
Q 007426 80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESL--TAGAALC 156 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~v--QsGAALC 156 (604)
||+++|+++|..||.... .-||+.-+|.++.||-.+. +-+| .+.++-+=-=|.|-|+++- |.+ -.||--|
T Consensus 795 pylpqi~stiL~rLnnks--a~vRqqaadlis~la~Vlk---tc~e--e~~m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKS--AKVRQQAADLISSLAKVLK---TCGE--EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred cchHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHH---hccH--HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999997664 2489999999999995443 1112 1234445556899999987 444 5677777
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHH---HHHHhcCCCCCC
Q 007426 157 LKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQS---GLRILNAGPGEA 232 (604)
Q Consensus 157 LAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S---~l~~L~~~~~ss 232 (604)
+--.|.-+.- ++| ..+++||+...|++++-.-. .-+.||+.++..++.-+ ..+.-++- .++.|. +-
T Consensus 868 I~nvigm~km-~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v--~aREWMRIcfeLlelLk----ah 937 (1172)
T KOG0213|consen 868 IVNVIGMTKM-TPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV--SAREWMRICFELLELLK----AH 937 (1172)
T ss_pred HHHhcccccc-CCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC--CHHHHHHHHHHHHHHHH----HH
Confidence 7777766552 333 56899999999999986665 46778887777766543 33333332 345555 55
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCch
Q 007426 233 NSQKRLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 233 DWq~RKAAAeaL~~la~~~d~~~L 256 (604)
+=..|.||.+.+..|++..++..+
T Consensus 938 kK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 938 KKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred HHHHHHHHHhhhhHHHHhcCHHHH
Confidence 568899999999999988877544
No 6
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.016 Score=65.37 Aligned_cols=258 Identities=20% Similarity=0.245 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHHHHhhcCCC--ChhHHHhhhccCCCCC-CCchhh-HHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426 19 DADSRKSAMKALKSYVKDLDSK--AIPLFLAQVSETKENG-SVSGEY-TISLYEVLARVHGANIVPQIDSIMTTITKTLA 94 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~d--tlP~FLscV~dtd~~~-s~vRke-~I~Lle~LArvHG~~iaPhL~KImstIVRRLs 94 (604)
+-..+.-|..++-.+++++-.. .=-.|+.-++.....+ ++-++| .+=-++.+...-|...-|++-.++=+|.--..
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG 226 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence 6667777889999999988433 3456888888774443 445555 55556777777799999999999999999888
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--c-ch--hh-HH---------HHHHHHH
Q 007426 95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--Q-ES--LT-AG---------AALCLKA 159 (604)
Q Consensus 95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--q-e~--vQ-sG---------AALCLAA 159 (604)
|..- .||+|=.+++-|+-+++.. .-+..|+.||..+|.+. + +. +| .| -++||..
T Consensus 227 d~~~--~Vr~Aa~~a~kai~~~~~~---------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~ 295 (569)
T KOG1242|consen 227 DKIN--KVREAAVEAAKAIMRCLSA---------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPD 295 (569)
T ss_pred ccch--hhhHHHHHHHHHHHHhcCc---------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence 8875 4799999999999988652 12467888888888777 2 11 11 11 1223333
Q ss_pred Hhcc---CCCCC------------------CCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHH
Q 007426 160 LVDS---DNWRF------------------ASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLI 218 (604)
Q Consensus 160 lVEs---~nwr~------------------Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll 218 (604)
+|-. .-|-. -.++..++..|++..+|.+|.+.+.+=+...++ -+....+.++..+.++
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~-ttFV~~V~~psLalmv 374 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGA-TTFVAEVDAPSLALMV 374 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcc-eeeeeeecchhHHHHH
Confidence 2210 01211 111234556666677777776666422222211 1111223334444444
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc-CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH-HHHHHh
Q 007426 219 QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL-DPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL-QTAKRI 292 (604)
Q Consensus 219 ~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~-d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL-q~wK~I 292 (604)
+=..+-|. .-+--+++.+++.+..+.+.+ |+..|+.++.+++-.|+.-=.|=||.||..+.+|| -+-|.+
T Consensus 375 piL~R~l~----eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 375 PILKRGLA----ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHHHh----hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 44444444 444444555666677767677 89999999999999999999999999999999999 555555
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.22 E-value=0.0071 Score=70.73 Aligned_cols=219 Identities=17% Similarity=0.164 Sum_probs=119.2
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426 18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA 97 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd 97 (604)
.|.+-|..|++.|..+++.+.+ .+..+..|.+ ++..||..++..|..+. .++ ...+++.|.|++
T Consensus 664 ~d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L~~---~d~~VR~~A~~aL~~~~--~~~---------~~~l~~~L~D~d 727 (897)
T PRK13800 664 GAAAVRRAAAEGLRELVEVLPP--APALRDHLGS---PDPVVRAAALDVLRALR--AGD---------AALFAAALGDPD 727 (897)
T ss_pred CCHHHHHHHHHHHHHHHhccCc--hHHHHHHhcC---CCHHHHHHHHHHHHhhc--cCC---------HHHHHHHhcCCC
Confidence 3566788888899888775544 4555555543 33468888887776653 111 123456677776
Q ss_pred CChhhHHHHHHHHHHH------HhhcCCCCCc-cccchhhHHhh-------hchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 98 GSFPLQQACSRVVPAI------ARYGIDPTTP-EDKKRHIIHSL-------CKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 98 SS~~vR~AC~kvv~AL------Ary~idp~~~-~~~~~~ii~sl-------~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
- .||.+=+.+.+.+ ...+.|+... -...-..+..+ +.+|...|..+..-|..-|+..|+..-+
T Consensus 728 ~--~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~- 804 (897)
T PRK13800 728 H--RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC- 804 (897)
T ss_pred H--HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Confidence 3 3565433333321 1111122110 00000000111 2234444444444566666666665522
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426 164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM 243 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea 243 (604)
+.+.+ ..+..+|++++-+- -...+.+|..++. ..-+..++..|+ ..||+.|++|+++
T Consensus 805 ------~~~~~----~~l~~aL~d~d~~V--R~~Aa~aL~~l~~-------~~a~~~L~~~L~----D~~~~VR~~A~~a 861 (897)
T PRK13800 805 ------PPDDV----AAATAALRASAWQV--RQGAARALAGAAA-------DVAVPALVEALT----DPHLDVRKAAVLA 861 (897)
T ss_pred ------cchhH----HHHHHHhcCCChHH--HHHHHHHHHhccc-------cchHHHHHHHhc----CCCHHHHHHHHHH
Confidence 11111 23566777764221 2334445544431 122455666676 6899999999999
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 244 LNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 244 L~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
|..+ ..+ ......|+..-.|.=+.||.++.+||+.
T Consensus 862 L~~~--~~~--------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRW--PGD--------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred Hhcc--CCC--------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9885 111 2345566666678899999999999975
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.038 Score=66.09 Aligned_cols=244 Identities=16% Similarity=0.228 Sum_probs=143.2
Q ss_pred HHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 007426 32 SYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVV 110 (604)
Q Consensus 32 siak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv 110 (604)
.|++++=++.-|-.|.-|..+ .++.+.-|+-++++|..+.+.-|....|||.-+..=..+.|.|+++. ||-+-+.++
T Consensus 106 eia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~--vr~~a~rA~ 183 (1075)
T KOG2171|consen 106 EIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP--VRVAAVRAL 183 (1075)
T ss_pred HHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch--HHHHHHHHH
Confidence 455555343555555444443 44445679999999999999999999999999999999999999875 799999999
Q ss_pred HHHHhhcC-CCCCccccchhhHHhhhchhHHhhhcccc-hhhHHHHHHHHHH---hccCCCCCCCHHHHH--HHHHHHHH
Q 007426 111 PAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSLLGSQE-SLTAGAALCLKAL---VDSDNWRFASDEMVN--KVCQNVAG 183 (604)
Q Consensus 111 ~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL~~qqe-~vQsGAALCLAAl---VEs~nwr~Ap~elv~--rlc~Rv~k 183 (604)
++.+.|.- ++.- ..-+..++--++..|.+-.+ .-.--|+.||-++ +|+.. ++-.+-+.+ ++|..|++
T Consensus 184 ~a~~~~~~~~~~~-----~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 184 GAFAEYLENNKSE-----VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHHHHhccchHH-----HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhh
Confidence 99998862 1100 11122222223333333221 1122234444444 44421 111111111 22322221
Q ss_pred hhcCCccchh---hHHHHHHHHHHh------------------------------------------------------h
Q 007426 184 ALEEKSTQTN---SHMGLVMALAKH------------------------------------------------------N 206 (604)
Q Consensus 184 aL~~ks~qtk---Ahl~LV~ALs~~------------------------------------------------------n 206 (604)
++...-- .-|.++.++++. -
T Consensus 258 ---n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 258 ---NKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred ---cccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHH
Confidence 1111000 011112222221 1
Q ss_pred hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 207 ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 207 ~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
.....-+|-.+++-..+.|..-+.+.+|..|+||--+|..++.... +.+..++..++...=+.=-|-=+.||-|+.-|+
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 1111112222333333444444459999999999999999998775 567778899888887888899999999998887
Q ss_pred H
Q 007426 287 Q 287 (604)
Q Consensus 287 q 287 (604)
-
T Consensus 414 g 414 (1075)
T KOG2171|consen 414 G 414 (1075)
T ss_pred H
Confidence 4
No 9
>PRK09687 putative lyase; Provisional
Probab=96.94 E-value=0.045 Score=56.31 Aligned_cols=202 Identities=12% Similarity=0.146 Sum_probs=120.5
Q ss_pred hhhcCCchh--HHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHh
Q 007426 14 ANLDKDADS--RKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITK 91 (604)
Q Consensus 14 ~KLs~DRDT--~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVR 91 (604)
..|. |.|+ |..|+..|..+= +++.++. |..+.. ++...+|.+++..|+.|.. ++.. ..+.+..+..
T Consensus 30 ~~L~-d~d~~vR~~A~~aL~~~~---~~~~~~~-l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~~ 97 (280)
T PRK09687 30 RLLD-DHNSLKRISSIRVLQLRG---GQDVFRL-AIELCS--SKNPIERDIGADILSQLGM-AKRC----QDNVFNILNN 97 (280)
T ss_pred HHHh-CCCHHHHHHHHHHHHhcC---cchHHHH-HHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHHH
Confidence 3444 5555 667888876542 3444454 444553 3335789999999988643 1110 3455555554
Q ss_pred h-ccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCC
Q 007426 92 T-LASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFAS 170 (604)
Q Consensus 92 R-LsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap 170 (604)
. +.|++. .||...+.+.|-+......+ ...+..+|..++...+..|..+||..|... ..
T Consensus 98 l~~~D~d~--~VR~~A~~aLG~~~~~~~~~----------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--------~~ 157 (280)
T PRK09687 98 LALEDKSA--CVRASAINATGHRCKKNPLY----------SPKIVEQSQITAFDKSTNVRFAVAFALSVI--------ND 157 (280)
T ss_pred HHhcCCCH--HHHHHHHHHHhccccccccc----------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc--------CC
Confidence 4 477763 47888777777664221111 123556677777777778999988888432 12
Q ss_pred HHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426 171 DEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS 250 (604)
Q Consensus 171 ~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~ 250 (604)
.+ ..+-+..+|+++... .....+.+|.+.... ....+...+..|. ..||..|++|+.+|..+.
T Consensus 158 ~~----ai~~L~~~L~d~~~~--VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 158 EA----AIPLLINLLKDPNGD--VRNWAAFALNSNKYD-----NPDIREAFVAMLQ----DKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred HH----HHHHHHHHhcCCCHH--HHHHHHHHHhcCCCC-----CHHHHHHHHHHhc----CCChHHHHHHHHHHHccC--
Confidence 22 345566778776542 345555566655211 1123455566666 689999999999998742
Q ss_pred cCCCchhhhHHHHHHHHHh
Q 007426 251 LDPRSIFSELELIIEGMEN 269 (604)
Q Consensus 251 ~d~~~L~se~~S~I~~LE~ 269 (604)
++ .-+..+|+.|+.
T Consensus 221 -~~----~av~~Li~~L~~ 234 (280)
T PRK09687 221 -DK----RVLSVLIKELKK 234 (280)
T ss_pred -Ch----hHHHHHHHHHcC
Confidence 11 245677777775
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.55 E-value=0.046 Score=64.82 Aligned_cols=230 Identities=19% Similarity=0.190 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHhhcCCCChhHHHhh-hccC-----CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426 22 SRKSAMKALKSYVKDLDSKAIPLFLAQ-VSET-----KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS 95 (604)
Q Consensus 22 T~~iA~~eLesiak~Ld~dtlP~FLsc-V~dt-----d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD 95 (604)
.+.--+..++.+++.+ .+.+|.-+.+ |..- .+++.-+-.+++.++.+|+...+..++-+-.+|+.+|+|-|++
T Consensus 667 lr~~~l~a~~~L~~~~-~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 667 LRLATLTALDKLVKNY-SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred HHHHHHHHHHHHHHHH-hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence 3344556677777777 5566665432 2221 1222346789999999999999999999999999999999999
Q ss_pred CCCChhhH----HHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhHHHHHHHHHHhccCCCCCCC
Q 007426 96 SAGSFPLQ----QACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTAGAALCLKALVDSDNWRFAS 170 (604)
Q Consensus 96 sdSS~~vR----~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQsGAALCLAAlVEs~nwr~Ap 170 (604)
|- +| .+|-+..-||. .++++.- +-...+..+.+|..|--.... +.+=-..|.|.|++..+.. .-+
T Consensus 746 pl----lqg~al~~~l~~f~alV--~t~~~~l--~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~~s 815 (1233)
T KOG1824|consen 746 PL----LQGGALSALLLFFQALV--ITKEPDL--DYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--QKS 815 (1233)
T ss_pred cc----ccchHHHHHHHHHHHHH--hcCCCCc--cHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--ccc
Confidence 85 33 36666666665 3332221 122345556666655444322 4444558999999999732 112
Q ss_pred HHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426 171 DEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS 250 (604)
Q Consensus 171 ~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~ 250 (604)
..++-++.. .+++.++.-++=||.++ +|.+++.-.-..+..-+-..+++.++ +.+=-.++||+.||.+|+.
T Consensus 816 ~s~a~kl~~---~~~s~~s~~~ikvfa~L-slGElgr~~~~s~~~e~~~~iieaf~----sp~edvksAAs~ALGsl~v- 886 (1233)
T KOG1824|consen 816 KSLATKLIQ---DLQSPKSSDSIKVFALL-SLGELGRRKDLSPQNELKDTIIEAFN----SPSEDVKSAASYALGSLAV- 886 (1233)
T ss_pred hhHHHHHHH---HHhCCCCchhHHHHHHh-hhhhhccCCCCCcchhhHHHHHHHcC----CChHHHHHHHHHHhhhhhc-
Confidence 334333332 22333444444566665 56676655433344445566778888 6677889999999999863
Q ss_pred cCCCchhhhHHHHHHHHHhccCCC
Q 007426 251 LDPRSIFSELELIIEGMENCQSDQ 274 (604)
Q Consensus 251 ~d~~~L~se~~S~I~~LE~cRfDK 274 (604)
..+..++.-+++-.|+-..+|
T Consensus 887 ---gnl~~yLpfil~qi~sqpk~Q 907 (1233)
T KOG1824|consen 887 ---GNLPKYLPFILEQIESQPKRQ 907 (1233)
T ss_pred ---CchHhHHHHHHHHHhcchHhH
Confidence 246667777776666655544
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.53 E-value=0.026 Score=60.03 Aligned_cols=219 Identities=18% Similarity=0.201 Sum_probs=137.9
Q ss_pred CCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhH-HHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCccc
Q 007426 4 CLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPL-FLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQ 81 (604)
Q Consensus 4 ~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~-FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPh 81 (604)
.+.|.|.+.|+ +.++..|+-|+-.|-++.+. +|+.++. |+..|... .++...|...++.++..+ +.-.+...+.
T Consensus 114 ~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 114 PLIPDVIKLLS--DPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 34566666666 45778899999999999986 7777776 45555544 344456888999999888 2222222266
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHh
Q 007426 82 IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALV 161 (604)
Q Consensus 82 L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlV 161 (604)
+++.+..+.+.|.+++ --...+.+..|..|+.. ..++... ..++.+|...|...+..|...++=|+..+-
T Consensus 190 ~~~~~~~L~~~l~~~~-----~~~q~~il~~l~~~~~~--~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPD-----PWLQIKILRLLRRYAPM--EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHHHHHHHHHTCCS-----HHHHHHHHHHHTTSTSS--SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcccccc-----hHHHHHHHHHHHhcccC--ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 7777777777666665 13556666666666542 1111110 457777777777788888888877777554
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
. ..+++..+++.+.++|.++....+ .-+..+.-+++.++..+. + ....+.+|.. ++|-..|+.|
T Consensus 260 ~-------~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~----~~~~~~~l~~---~~d~~Ir~~~ 324 (526)
T PF01602_consen 260 P-------SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N----QSLILFFLLY---DDDPSIRKKA 324 (526)
T ss_dssp S-------SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T----HHHHHHHHHC---SSSHHHHHHH
T ss_pred c-------chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h----hhhhhheecC---CCChhHHHHH
Confidence 4 344788999999999997654333 233334444444422222 1 1222345552 5788899999
Q ss_pred HHHHHHHHhhc
Q 007426 241 IQMLNFLMKSL 251 (604)
Q Consensus 241 AeaL~~la~~~ 251 (604)
.+.|..++...
T Consensus 325 l~lL~~l~~~~ 335 (526)
T PF01602_consen 325 LDLLYKLANES 335 (526)
T ss_dssp HHHHHHH--HH
T ss_pred HHHHhhccccc
Confidence 99998877433
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.49 E-value=0.087 Score=62.62 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=125.8
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhH-HHHHHHHHHHHhhcCCCCCccccchhhHHhhhc
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQ-QACSRVVPAIARYGIDPTTPEDKKRHIIHSLCK 136 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR-~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~K 136 (604)
+.|--|+.+|.+|..+.++.+++|++-++..|+++|.|-.||-..+ +|-+-...+|..+.- +.=...+..+.-
T Consensus 450 kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p------~~fhp~~~~Ls~ 523 (1233)
T KOG1824|consen 450 KTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP------EVFHPHLSALSP 523 (1233)
T ss_pred cchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh------hhcccchhhhhh
Confidence 4788999999999999999999999999999999998876654433 677777788775532 111223456777
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhhh
Q 007426 137 PLSDSLLGSQESLTAGAALCLKALVDSDN-----WRFASDEMVNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNAL 208 (604)
Q Consensus 137 PL~EaL~~qqe~vQsGAALCLAAlVEs~n-----wr~Ap~elv~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~ 208 (604)
|+.-|.++.---+++-|=+-...+|.-=- -.|-..+.|..|.--+.+.|+.+-.--+ ..+..++=++..-+.
T Consensus 524 ~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 524 PVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD 603 (1233)
T ss_pred HHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence 77777777665565544443344443211 1133456788888888888887543332 333333332323233
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426 209 IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM 267 (604)
Q Consensus 209 iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L 267 (604)
......+..++-..+-|+ +=-||.+|+.||..|+.+.=.-.+..-...++..+
T Consensus 604 ~l~~eL~~~L~il~eRl~------nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 604 FLGNELPRTLPILLERLG------NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred hhhhhhHHHHHHHHHHHh------chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 433443344444444444 55799999999999986653333344445555544
No 13
>PRK09687 putative lyase; Provisional
Probab=96.49 E-value=0.3 Score=50.38 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=132.7
Q ss_pred CCchhHHHHHHHHHHHHhhc--CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426 18 KDADSRKSAMKALKSYVKDL--DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS 95 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~L--d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD 95 (604)
.|+.-|..|+..|-.+-..- ....+|.+..-+. .+++..||..++..|+.++.-+ ..+.++.+..+...+.|
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D 139 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFD 139 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhC
Confidence 37788899999998865311 1234555554433 3444679999999998875322 33467788888888888
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH
Q 007426 96 SAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN 175 (604)
Q Consensus 96 sdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~ 175 (604)
++. .||-+ ++.+|+... + .....+|..+|..++..|...|+.+|..+ .. .+++.
T Consensus 140 ~~~--~VR~~---a~~aLg~~~-~------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~-----~~~~~-- 193 (280)
T PRK09687 140 KST--NVRFA---VAFALSVIN-D------------EAAIPLLINLLKDPNGDVRNWAAFALNSN-KY-----DNPDI-- 193 (280)
T ss_pred CCH--HHHHH---HHHHHhccC-C------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC-----CCHHH--
Confidence 864 35654 445554331 1 23567889999888888999999999987 21 12333
Q ss_pred HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCc
Q 007426 176 KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRS 255 (604)
Q Consensus 176 rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~ 255 (604)
-+-+.++|+++...- ....+.+|.+... ...++.++..|+ .++| |+.|+++|..|- ++.
T Consensus 194 --~~~L~~~L~D~~~~V--R~~A~~aLg~~~~-------~~av~~Li~~L~----~~~~--~~~a~~ALg~ig---~~~- 252 (280)
T PRK09687 194 --REAFVAMLQDKNEEI--RIEAIIGLALRKD-------KRVLSVLIKELK----KGTV--GDLIIEAAGELG---DKT- 252 (280)
T ss_pred --HHHHHHHhcCCChHH--HHHHHHHHHccCC-------hhHHHHHHHHHc----CCch--HHHHHHHHHhcC---CHh-
Confidence 334667777664333 4555666666542 234677788888 4565 788999988853 111
Q ss_pred hhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 256 IFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 256 L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
...-.+..++ +++ =..|+..+.+||+
T Consensus 253 ---a~p~L~~l~~--~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 ---LLPVLDTLLY--KFD-DNEIITKAIDKLK 278 (280)
T ss_pred ---HHHHHHHHHh--hCC-ChhHHHHHHHHHh
Confidence 2223333333 233 5678888888875
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.47 E-value=0.12 Score=65.85 Aligned_cols=266 Identities=16% Similarity=0.164 Sum_probs=161.2
Q ss_pred CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHH-HhCCCCccc---HHHHHHHHHhhcc
Q 007426 19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLAR-VHGANIVPQ---IDSIMTTITKTLA 94 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LAr-vHG~~iaPh---L~KImstIVRRLs 94 (604)
|...++.|+..|..+++.=+.+.++++++= ..+++ +.+..++|+.++-+.. .+++.+.-. -...+..++.-|.
T Consensus 543 d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L-Llsdd--~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~ 619 (2102)
T PLN03200 543 GPKGQEIAAKTLTKLVRTADAATISQLTAL-LLGDL--PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS 619 (2102)
T ss_pred CHHHHHHHHHHHHHHHhccchhHHHHHHHH-hcCCC--hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc
Confidence 788889999999999998888899997754 44444 3457778887755533 233211100 0135566666666
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCC-CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHH
Q 007426 95 SSAGSFPLQQACSRVVPAIARYGID-PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEM 173 (604)
Q Consensus 95 DsdSS~~vR~AC~kvv~ALAry~id-p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~el 173 (604)
+.. ...--+++.+|+.|+.. +.. -..-+..-.+-||..-|......++--||.||.++-.+.+ ..--..+
T Consensus 620 sgs-----~~ikk~Aa~iLsnL~a~~~d~---~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~ 690 (2102)
T PLN03200 620 SSK-----EETQEKAASVLADIFSSRQDL---CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY 690 (2102)
T ss_pred CCC-----HHHHHHHHHHHHHHhcCChHH---HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 554 23444455566655431 111 0112334478899999999888999999999999987432 1001123
Q ss_pred HHH-HHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 174 VNK-VCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 174 v~r-lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
+.. +.+-++++|+.++..-+ .-+..+..+++......+..-...|+...++|+ +++-..|+.|+-+|..|...-
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr----~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR----EGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH----hCChHHHHHHHHHHHHHHhCC
Confidence 443 67779999998766655 233344455666544433343445889999999 677788888999999887554
Q ss_pred CCCc-hhhhHH------HHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc-CCCccccCCC
Q 007426 252 DPRS-IFSELE------LIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE-NGPKFEKGSG 305 (604)
Q Consensus 252 d~~~-L~se~~------S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~-~g~~~~~~~~ 305 (604)
..+. |..... ..+..|+.-.+|-+ +..+||+.--.+++- .|..+.+++.
T Consensus 767 ~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~-----~~~~al~~l~~l~~~~~~~~~~~~~~ 823 (2102)
T PLN03200 767 PVDDVLKDSVQCRGTVLALVDLLNSTDLDSS-----ATSEALEALALLARTKGGANFSHPPW 823 (2102)
T ss_pred ChhHHHHHHHHHhCcHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhhcccCCCCCCch
Confidence 3222 211111 11222444334322 446888888888864 5555544443
No 15
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.00 E-value=1.7 Score=46.77 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=149.1
Q ss_pred chhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCC----------CCC---CchhhHHHH-HHHHHHHhCCCCcccHHHH
Q 007426 20 ADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKE----------NGS---VSGEYTISL-YEVLARVHGANIVPQIDSI 85 (604)
Q Consensus 20 RDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~----------~~s---~vRke~I~L-le~LArvHG~~iaPhL~KI 85 (604)
...-..+.+=+..|++.|+.+.=..|+.++++.-- ..+ ...+..+.| -+.++..+.+-..|.+..+
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l 190 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL 190 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence 34446677888999999988777777776664210 011 123344444 4678889999999999999
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC----------------Cccccchhh---HHhhhc----------
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT----------------TPEDKKRHI---IHSLCK---------- 136 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~----------------~~~~~~~~i---i~sl~K---------- 136 (604)
+..++.......... .|-+|.+.++.|.-+..+.. ......... +..+.|
T Consensus 191 l~~l~~~~~~~~~~~-~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 191 LQSLLNLALSSEDEF-SRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHcCCChH-HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 999999876665443 79999999999994433211 011111111 111111
Q ss_pred -hhHHhhhccc--chhhHHHHHHHHHHhcc-CCC----CCCCH------HHHHHHHHHHHHhhcCCccchh-hHHHHHHH
Q 007426 137 -PLSDSLLGSQ--ESLTAGAALCLKALVDS-DNW----RFASD------EMVNKVCQNVAGALEEKSTQTN-SHMGLVMA 201 (604)
Q Consensus 137 -PL~EaL~~qq--e~vQsGAALCLAAlVEs-~nw----r~Ap~------elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~A 201 (604)
.+.+-|.+-. +.+.-.||=++.-++.- +.. .++-. -.++.+.|++....++.+...| .++.++..
T Consensus 270 ~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 270 TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 1122222211 33445555555555543 110 01111 1334466667666666544344 44444444
Q ss_pred HHHhh-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426 202 LAKHN-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM 267 (604)
Q Consensus 202 Ls~~n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L 267 (604)
+.++. ..++..+...|++=.++.|+ ..|...|.++.++|..++..- +..+.+++.++|..|
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~----~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLS----LPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRL 411 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 44444 66888899999999999998 789999999999999998555 567777788888765
No 16
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.97 E-value=0.19 Score=52.54 Aligned_cols=106 Identities=22% Similarity=0.341 Sum_probs=63.6
Q ss_pred HHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC---------CCCCCCchhhHHHHHHHHHHHhC--C
Q 007426 9 LRQELANLD-KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET---------KENGSVSGEYTISLYEVLARVHG--A 76 (604)
Q Consensus 9 ~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt---------d~~~s~vRke~I~Lle~LArvHG--~ 76 (604)
+++.|..|. |-..||..| |+.|.+-|...-+|-|+..-..| +...+.-+.-+.++++.||-.=| .
T Consensus 45 L~~~Id~l~eK~~~~Re~a---L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAA---LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHH---HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 566777776 223444444 55555556565666666433222 22222223346678888887744 4
Q ss_pred CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
..--.+..+...+.+.+.|...++.+|.+|..+.+.++-++
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 44444455555566666777666778999999888888553
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.098 Score=60.40 Aligned_cols=251 Identities=17% Similarity=0.201 Sum_probs=156.4
Q ss_pred CchhHHHHHHHHHHHHhh----cCCC--------ChhHHHhhhcc-----------------------------------
Q 007426 19 DADSRKSAMKALKSYVKD----LDSK--------AIPLFLAQVSE----------------------------------- 51 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~----Ld~d--------tlP~FLscV~d----------------------------------- 51 (604)
|--|..-|+.+|.+|-++ ||.+ .||.||-=...
T Consensus 141 d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~l 220 (885)
T KOG2023|consen 141 DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEIL 220 (885)
T ss_pred cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 344778899999988764 3331 38888743322
Q ss_pred ---CCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccch
Q 007426 52 ---TKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKR 128 (604)
Q Consensus 52 ---td~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~ 128 (604)
+.++.+.|||+.-+-|-.|-.+|.+.|+||++.||..++.+-.|+|=.|. =.||- .--|+|-. | --.
T Consensus 221 FalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VA-LEACE-Fwla~aeq---p-----i~~ 290 (885)
T KOG2023|consen 221 FALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVA-LEACE-FWLALAEQ---P-----ICK 290 (885)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHH-HHHHH-HHHHHhcC---c-----CcH
Confidence 23334679999999999999999999999999999999999999997653 35773 33444422 2 113
Q ss_pred hhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhc--CCccc--------------h
Q 007426 129 HIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALE--EKSTQ--------------T 192 (604)
Q Consensus 129 ~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~--~ks~q--------------t 192 (604)
+++...++-|+-.|.+.-.+.-.-- -|-+-+|.+. +.|+- =+++=||..|-=. ..+.+ +
T Consensus 291 ~~L~p~l~kliPvLl~~M~Ysd~D~--~LL~~~eeD~--~vpDr-eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 291 EVLQPYLDKLIPVLLSGMVYSDDDI--ILLKNNEEDE--SVPDR-EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred HHHHHHHHHHHHHHHccCccccccH--HHhcCccccc--cCCch-hhhccchhhhchhccCccccccccccccccccccc
Confidence 4455555556666655433321111 1222222211 12221 1234465433111 01100 0
Q ss_pred hhHHHH-HHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhcc
Q 007426 193 NSHMGL-VMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQ 271 (604)
Q Consensus 193 kAhl~L-V~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cR 271 (604)
-.--.| .+|.+.. .......|..++..++..|++.+.+++|-.|-|++-||..||...- ..+-.++..+|-.|=+|=
T Consensus 366 ~~dWNLRkCSAAaL-DVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 366 FSDWNLRKCSAAAL-DVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLL 443 (885)
T ss_pred cccccHhhccHHHH-HHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHh
Confidence 000001 0111111 1112457888999999999999999999999999999999997664 456678899999999999
Q ss_pred CCCccchhHHHHHHH
Q 007426 272 SDQMAYVKGASLEAL 286 (604)
Q Consensus 272 fDKVk~VR~am~eAL 286 (604)
+||-+.||.-..=+|
T Consensus 444 ~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTL 458 (885)
T ss_pred ccCccceeeeeeeeH
Confidence 999999997544333
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.33 Score=55.23 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=163.1
Q ss_pred CCChHHHHHHhhh-cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCC-CCCchhhHHHHHHHHHHHhCCCCccc
Q 007426 4 CLSPILRQELANL-DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKEN-GSVSGEYTISLYEVLARVHGANIVPQ 81 (604)
Q Consensus 4 ~lsp~~rqeL~KL-s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~-~s~vRke~I~Lle~LArvHG~~iaPh 81 (604)
|+-|++=.-|.+. +++..-|+.|++..+.+.+.+++-+++.||--+..+-.. +=..+..++.|++.++-.-...+.-.
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 4556666778888 666778999999999999999998876666555444111 22468899999999998888889999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHh
Q 007426 82 IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALV 161 (604)
Q Consensus 82 L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlV 161 (604)
++.|+=-++..|-|+.- -||.|=-+++-.+.+.+..| -|..+..=|.|||..-...+. -|+..+.
T Consensus 293 lp~iiP~lsevl~DT~~--evr~a~~~~l~~~~svidN~---------dI~~~ip~Lld~l~dp~~~~~----e~~~~L~ 357 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKP--EVRKAGIETLLKFGSVIDNP---------DIQKIIPTLLDALADPSCYTP----ECLDSLG 357 (569)
T ss_pred HhHhhHHHHHHHccCCH--HHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHhcCcccchH----HHHHhhc
Confidence 99999999999999873 47876555555555443212 257789999999998773321 1222222
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhh--hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426 162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHN--ALIVEAYARLLIQSGLRILNAGPGEANSQKRL 238 (604)
Q Consensus 162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n--~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK 238 (604)
..+--.+...+.+.-|-|-+...|.+.++-++ .-...++=+.+.. +.-+.+|...|++.....+.+ -+-..|-
T Consensus 358 ~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d----~~PEvR~ 433 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD----AVPEVRA 433 (569)
T ss_pred ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC----CChhHHH
Confidence 22211122234455677777778888887776 3333344334444 667788999999998888884 3889999
Q ss_pred HHHHHHHHHHhhcCCC
Q 007426 239 LAIQMLNFLMKSLDPR 254 (604)
Q Consensus 239 AAAeaL~~la~~~d~~ 254 (604)
=|+-+|+.+.+-++..
T Consensus 434 vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 434 VAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988766543
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.77 E-value=0.89 Score=50.41 Aligned_cols=223 Identities=14% Similarity=0.260 Sum_probs=133.2
Q ss_pred hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
|.+.+-|.. . +..-++.|++.|.+++++ .+.+-+|..+.||.+++. .+.+.++.++..++....
T Consensus 80 ~~L~~gL~h-~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~---~Va~~A~~~L~~l~~~~~--- 151 (503)
T PF10508_consen 80 PFLQRGLTH-P-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL---SVAKAAIKALKKLASHPE--- 151 (503)
T ss_pred HHHHHHhcC-C-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH---HHHHHHHHHHHHHhCCch---
Confidence 444445543 3 677788888888887653 257779999999987765 389999999999997443
Q ss_pred cccHHHH-----HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh--hhchhHHhhhcccc-hhh
Q 007426 79 VPQIDSI-----MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS--LCKPLSDSLLGSQE-SLT 150 (604)
Q Consensus 79 aPhL~KI-----mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s--l~KPL~EaL~~qqe-~vQ 150 (604)
.+..+ +..+..-+..+++ . +|--+-+++..++..-. +....+.. |...|...|.. .+ -+|
T Consensus 152 --~~~~l~~~~~~~~L~~l~~~~~~-~-vR~Rv~el~v~i~~~S~-------~~~~~~~~sgll~~ll~eL~~-dDiLvq 219 (503)
T PF10508_consen 152 --GLEQLFDSNLLSKLKSLMSQSSD-I-VRCRVYELLVEIASHSP-------EAAEAVVNSGLLDLLLKELDS-DDILVQ 219 (503)
T ss_pred --hHHHHhCcchHHHHHHHHhccCH-H-HHHHHHHHHHHHHhcCH-------HHHHHHHhccHHHHHHHHhcC-ccHHHH
Confidence 22222 4555554444343 2 46555566666664311 11122222 56666666666 44 469
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHH-HHHHHHHhhcC----Cccchh---hHHHHHHHHHHhh-hhHHHHhHHHHHHHH
Q 007426 151 AGAALCLKALVDSDNWRFASDEMVNK-VCQNVAGALEE----KSTQTN---SHMGLVMALAKHN-ALIVEAYARLLIQSG 221 (604)
Q Consensus 151 sGAALCLAAlVEs~nwr~Ap~elv~r-lc~Rv~kaL~~----ks~qtk---Ahl~LV~ALs~~n-~~iiea~g~~Ll~S~ 221 (604)
.-+.-+|..+.+... .-.=+++. +.++++..|.+ +-+.+. +-|-..+.++.+- ..+++.| ..++...
T Consensus 220 lnalell~~La~~~~---g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l 295 (503)
T PF10508_consen 220 LNALELLSELAETPH---GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERL 295 (503)
T ss_pred HHHHHHHHHHHcChh---HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHH
Confidence 999999999999522 11212221 45555555543 412221 2233333444432 2233333 2344555
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchh
Q 007426 222 LRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIF 257 (604)
Q Consensus 222 l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~ 257 (604)
.++++ +.|-..|-+|.++|..|....++..+-
T Consensus 296 ~~~~~----s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 296 FSMLE----SQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred HHHhC----CCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 55555 899999999999999999777654433
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.59 E-value=0.018 Score=51.09 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhcCCC-------ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426 23 RKSAMKALKSYVKDLDSK-------AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS 95 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~d-------tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD 95 (604)
|+-|+-.|-+++-.|..+ -||+-|.|+.|.+. -||-++..-|-.++.+.++.+.||+..|...+.|.+.|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~---rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDS---RVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455556666665555432 36777777776554 48999999999999999999999999999999999999
Q ss_pred CCCChhhHHHH
Q 007426 96 SAGSFPLQQAC 106 (604)
Q Consensus 96 sdSS~~vR~AC 106 (604)
++.+ ||.||
T Consensus 80 ~d~~--Vr~~a 88 (97)
T PF12755_consen 80 PDEN--VRSAA 88 (97)
T ss_pred Cchh--HHHHH
Confidence 9976 47766
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.54 E-value=0.059 Score=61.82 Aligned_cols=234 Identities=13% Similarity=0.135 Sum_probs=135.0
Q ss_pred HHHHHHhhhcCCch--hHHHHHHHHHHHHhhcCCCC-----hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426 8 ILRQELANLDKDAD--SRKSAMKALKSYVKDLDSKA-----IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP 80 (604)
Q Consensus 8 ~~rqeL~KLs~DRD--T~~iA~~eLesiak~Ld~dt-----lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP 80 (604)
.++.-|+.++ |.- -|++++....+++-.|---. .-.++..|+.+-..++..-+-.+--|+++--+-+-.--|
T Consensus 522 v~~kil~~~~-De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 522 VSRKILEYYS-DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHHhhcc-CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 4556667776 543 35666666666666552111 223333333331122212222233344555555666779
Q ss_pred cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chh--hHHHHHHH
Q 007426 81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESL--TAGAALCL 157 (604)
Q Consensus 81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~v--QsGAALCL 157 (604)
|++.|||+|+++|++.. ..+|.--+|.++.|+-.+.. ..| .+.+.-+=-=|.|.|++.- |.+ -.||--|+
T Consensus 601 ~l~~ivStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~--c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 601 HLSMIVSTILKLLRSKP--PDVRIRAADLMGSLAKVLKA--CGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred chHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHh--cch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 99999999999997764 23798889999999855431 111 1233444456889999876 444 56777788
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhh-HHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426 158 KALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNS-HMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 158 AAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkA-hl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~ 236 (604)
-..+.-..-++ + .+.++|++...|++++-+-.+ -+.||+-+....+.-+ +.+.-++---+.++ .+++-+=..
T Consensus 674 ~sv~~~~~mqp---P-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi--~~rEWMRIcfeLvd-~Lks~nKei 746 (975)
T COG5181 674 YSVHRFRSMQP---P-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI--GVREWMRICFELVD-SLKSWNKEI 746 (975)
T ss_pred hhhhcccccCC---c-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC--CHHHHHHHHHHHHH-HHHHhhHHH
Confidence 88888765331 1 578899999999998865542 4445544444433321 22222222222222 222444467
Q ss_pred HHHHHHHHHHHHhhcCCCch
Q 007426 237 RLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~~L 256 (604)
|.+|-+.+..|....++..+
T Consensus 747 RR~A~~tfG~Is~aiGPqdv 766 (975)
T COG5181 747 RRNATETFGCISRAIGPQDV 766 (975)
T ss_pred HHhhhhhhhhHHhhcCHHHH
Confidence 77777777777766665433
No 22
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.28 E-value=0.2 Score=44.55 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCC
Q 007426 194 SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSD 273 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfD 273 (604)
++++|. +++...+..++.|...+++-.+.++. ..||..|.+|.|+|.-|++... ..+-.+++.+..+|=..=.|
T Consensus 6 gli~La-a~ai~l~~~~~~~l~~Il~pVL~~~~----D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 6 GLIGLA-AVAIALGKDISKYLDEILPPVLKCFD----DQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred HHHHHH-HHHHHchHhHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 344444 33444455579999999999999999 6899999999999999998885 45666889999999999999
Q ss_pred CccchhHHHHHHHHHHH
Q 007426 274 QMAYVKGASLEALQTAK 290 (604)
Q Consensus 274 KVk~VR~am~eALq~wK 290 (604)
-=+-||.++.---++-|
T Consensus 80 ~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAAELLDRLLK 96 (97)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 99999999865544443
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.22 E-value=0.86 Score=48.75 Aligned_cols=242 Identities=15% Similarity=0.186 Sum_probs=132.3
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHH
Q 007426 9 LRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMT 87 (604)
Q Consensus 9 ~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIms 87 (604)
++.+|+ +.|+--+..|++-|-.+. +++.++.++..|..- .++.+.|||.++--+-.+.+..++.+-+. ++.
T Consensus 84 l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~ 155 (526)
T PF01602_consen 84 LQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIP 155 (526)
T ss_dssp HHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHH
T ss_pred HHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHH
Confidence 344444 235556677777777765 555566555554443 23335889988877777777766654333 455
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
.+.+.|.|.+- .|+.+...++..+ ++ . + +.....+..+.+-|...|.....-+|.-..=+|......
T Consensus 156 ~l~~lL~d~~~--~V~~~a~~~l~~i-~~-~-~----~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~---- 222 (526)
T PF01602_consen 156 KLKQLLSDKDP--SVVSAALSLLSEI-KC-N-D----DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM---- 222 (526)
T ss_dssp HHHHHTTHSSH--HHHHHHHHHHHHH-HC-T-H----HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS----
T ss_pred HHhhhccCCcc--hhHHHHHHHHHHH-cc-C-c----chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC----
Confidence 56666677762 2444444555555 11 1 0 000023333333333333333344565555555544332
Q ss_pred CCCHHHH--HHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426 168 FASDEMV--NKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLN 245 (604)
Q Consensus 168 ~Ap~elv--~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~ 245 (604)
..+.. .++...+...|.+.+ ..-.+..+..+..+.+... ....+++....+|. +.|+..|..|.++|.
T Consensus 223 --~~~~~~~~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~----s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 223 --EPEDADKNRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLS----SSDPNVRYIALDSLS 292 (526)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHT----SSSHHHHHHHHHHHH
T ss_pred --ChhhhhHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhh----cccchhehhHHHHHH
Confidence 33444 567777777777322 1124555555555443221 33445666677777 799999999999999
Q ss_pred HHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 246 FLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 246 ~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
.|+..- +..+. +..-. ++.+++|.=..||.-+.+.|
T Consensus 293 ~l~~~~-~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 293 QLAQSN-PPAVF-NQSLI---LFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HHCCHC-HHHHG-THHHH---HHHHHCSSSHHHHHHHHHHH
T ss_pred Hhhccc-chhhh-hhhhh---hheecCCCChhHHHHHHHHH
Confidence 987443 22333 32333 44566666677777655544
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.90 E-value=0.0063 Score=46.96 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=47.4
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAI 113 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~AL 113 (604)
.+|+.++..|+.++...+..+.||++++|..++..|.|++. .||.++..+++.|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999886 4698887777644
No 25
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.81 E-value=1.2 Score=42.51 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhh-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 007426 170 SDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHN-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFL 247 (604)
Q Consensus 170 p~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~l 247 (604)
....++++..|+.++|++++...+ +=+.|+.++.+.+ +.++..++...++..+.+|+. .++-...++|..+|..|
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRL 95 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 467899999999999999877776 6677888889998 888878888888999999996 67779999999999999
Q ss_pred HhhcCCC----------chhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 248 MKSLDPR----------SIFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 248 a~~~d~~----------~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
+....+. .|..++..+|+.++. ..+.+.+.++|.
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~------~~~~~~~l~~L~ 139 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD------SSCPETALDALA 139 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence 8654321 133344555665554 444444444443
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.79 E-value=1.3 Score=57.00 Aligned_cols=207 Identities=13% Similarity=0.195 Sum_probs=126.1
Q ss_pred CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHH
Q 007426 19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImst 88 (604)
+..-+..|+..|..++..- +++.||+|+..|...+ ..++++++..+.-||. |...+--.+. ..|-.
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~---~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIpp 534 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS---QKAKEDSATVLWNLCC-HSEDIRACVESAGAVPA 534 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHH
Confidence 4566777888887777532 5889999999997443 3589999999999987 5322222221 13345
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
++.-|.+.+ ...+.-.+.++..|+... | . ..++||.+.|.++...++.=+.-.|..++....
T Consensus 535 LV~LL~sgd--~~~q~~Aa~AL~nLi~~~-d-------~-----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~--- 596 (2102)
T PLN03200 535 LLWLLKNGG--PKGQEIAAKTLTKLVRTA-D-------A-----ATISQLTALLLGDLPESKVHVLDVLGHVLSVAS--- 596 (2102)
T ss_pred HHHHHhCCC--HHHHHHHHHHHHHHHhcc-c-------h-----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc---
Confidence 677777664 345655555555555431 1 1 134888888888776554444444444444321
Q ss_pred CCHHHH------HHHHHHHHHhhcCCccchhhH-HHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 169 ASDEMV------NKVCQNVAGALEEKSTQTNSH-MGLVMALAKHNALIVEAY-ARLLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 169 Ap~elv------~rlc~Rv~kaL~~ks~qtkAh-l~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
-.+.+ +...+.+..+|+..+...+.+ ...+..+..-++.++.+- .+-.++-.+..|. +++-..||.|
T Consensus 597 -~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs----s~~~~v~keA 671 (2102)
T PLN03200 597 -LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT----NNTEAVATQS 671 (2102)
T ss_pred -hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh----cCChHHHHHH
Confidence 11222 346788999999877666522 223333333333322221 1123667778888 6788899999
Q ss_pred HHHHHHHHhhcC
Q 007426 241 IQMLNFLMKSLD 252 (604)
Q Consensus 241 AeaL~~la~~~d 252 (604)
|.+|..++....
T Consensus 672 A~AL~nL~~~~~ 683 (2102)
T PLN03200 672 ARALAALSRSIK 683 (2102)
T ss_pred HHHHHHHHhCCC
Confidence 999999885443
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.62 E-value=0.2 Score=41.82 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=74.7
Q ss_pred hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHH
Q 007426 134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVE 211 (604)
Q Consensus 134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iie 211 (604)
++.+|.+.|...+..+..+|+.||+.+..... .....++. .+.+.+.++|.+++.... .=+.+++.|+...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 67788888888877899999999999988621 11224444 678889999998654443 334445555554433222
Q ss_pred HhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 212 AYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 212 a~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
... ..+++..+++|+ ..+...|+.|..+|..|.
T Consensus 86 ~~~~~g~l~~l~~~l~----~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLD----SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHh----cCCHHHHHHHHHHHHHhh
Confidence 222 226788888888 568999999999998764
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.42 Score=55.51 Aligned_cols=249 Identities=17% Similarity=0.228 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccCCC-CCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChh
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSETKE-NGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFP 101 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~-~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~ 101 (604)
|+--++.|+=++-=+-.+-+|..|-=|-++-. ..=.+|+-.|=-|+..|+=-=+-++||||-++..++.-|.|-- ..
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk--pl 449 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK--PL 449 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc--cc
Confidence 55555566655554444444444433333311 1135788888888888775556699999999999999998875 24
Q ss_pred hHH-HHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH---HH
Q 007426 102 LQQ-ACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN---KV 177 (604)
Q Consensus 102 vR~-AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~---rl 177 (604)
||. .| =+|+||..= -.++...+-+.-++.+|.-.|+..||-||=.|-...|-+.|. |-.++|. .+
T Consensus 450 VRsITC----WTLsRys~w--v~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~-----A~~eLVp~l~~I 518 (885)
T KOG2023|consen 450 VRSITC----WTLSRYSKW--VVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE-----AGEELVPYLEYI 518 (885)
T ss_pred eeeeee----eeHhhhhhh--HhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-----ccchhHHHHHHH
Confidence 675 55 367887651 112223455666777788888999999998777777777775 4566655 56
Q ss_pred HHHHHHhhcCCccchh---hHHHHHHHHHHhhhhH--HHHhHHHHH------------------------HHHHHHhcCC
Q 007426 178 CQNVAGALEEKSTQTN---SHMGLVMALAKHNALI--VEAYARLLI------------------------QSGLRILNAG 228 (604)
Q Consensus 178 c~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~i--iea~g~~Ll------------------------~S~l~~L~~~ 228 (604)
+..+.++++ -.|.| -+.-+||.|+.-.|.. -.+|-.-|+ .|+...|+.+
T Consensus 519 L~~l~~af~--kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 519 LDQLVFAFG--KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVG 596 (885)
T ss_pred HHHHHHHHH--HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcc
Confidence 777777777 34444 3556677766544322 123333111 1222233333
Q ss_pred CCCCCHHH--------HH-----------------------HHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCc
Q 007426 229 PGEANSQK--------RL-----------------------LAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQM 275 (604)
Q Consensus 229 ~~ssDWq~--------RK-----------------------AAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKV 275 (604)
..-.-|-. +| -|-+.|.-|+..++ .-+.+-. +.+++.|=.|=-|.|
T Consensus 597 F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg-~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 597 FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG-SHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh-hchHHHhhhccHHHHHHHHhccCC
Confidence 32223310 11 12334444444443 2233322 347789999999999
Q ss_pred cchhHHHHHHHH
Q 007426 276 AYVKGASLEALQ 287 (604)
Q Consensus 276 k~VR~am~eALq 287 (604)
+.||.+++--|-
T Consensus 676 peVRQS~FALLG 687 (885)
T KOG2023|consen 676 PEVRQSAFALLG 687 (885)
T ss_pred hHHHHHHHHHHH
Confidence 999999987653
No 29
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.29 E-value=1.4 Score=47.49 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=102.0
Q ss_pred hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC--CCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC
Q 007426 42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG--ANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGID 119 (604)
Q Consensus 42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG--~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id 119 (604)
||.||+.|-|++.......+.++..++.+|..+. ..++| +|+..+-..+....++-..+..|.-..-.+..+..+
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~---~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI---RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 6899999998877654567888888888887664 22333 333333333332222212334444444444444333
Q ss_pred CCCccccchhhHHh-hhchhHHhhhcccc--------hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhc----
Q 007426 120 PTTPEDKKRHIIHS-LCKPLSDSLLGSQE--------SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALE---- 186 (604)
Q Consensus 120 p~~~~~~~~~ii~s-l~KPL~EaL~~qqe--------~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~---- 186 (604)
..+ .+...-+.. ++..|++....... .+..-+-+| ..+|. +-+.+.-++++.++..++-
T Consensus 78 ~~~--~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~-~~iv~-----~l~~~~q~~~~~~~~~lf~~~~~ 149 (415)
T PF12460_consen 78 KQF--EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLI-NLIVR-----SLSPEKQQEILDELYSLFLSPKS 149 (415)
T ss_pred ccc--chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHH-HHHHH-----hCCHHHHHHHHHHHHHHHccccc
Confidence 301 111222222 55566665544321 122222222 22233 3577777888888888775
Q ss_pred ------C------CccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 187 ------E------KSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 187 ------~------ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
+ ...++...+ -+.|+.+.+.+.-+....+++..+.... ...++..|.++.++|..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~--~~il~~l~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 150 FSPFQPSSSTISEQQSRLVILF--SAILCSLRKDVSLPDLEELLQSLLNLAL---SSEDEFSRLAALQLLASLV 218 (415)
T ss_pred cCCCCccccccccccccHHHHH--HHHHHcCCcccCccCHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHH
Confidence 1 122222222 2234455555443344456666666554 3677999999999999887
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=94.05 E-value=11 Score=44.66 Aligned_cols=258 Identities=15% Similarity=0.124 Sum_probs=139.4
Q ss_pred hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426 7 PILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID 83 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~ 83 (604)
+.+++.|. ++++--|+.|+-.+-++-+ ++++.++ .|+..|.+- .++.+-|--.||.+|-.+...-++.+ -...
T Consensus 143 ~~lkk~L~--D~~pYVRKtAalai~Kly~-~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~ 218 (746)
T PTZ00429 143 EPLRRAVA--DPDPYVRKTAAMGLGKLFH-DDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSN 218 (746)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHh-hCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHH
Confidence 34455553 3345556666666666544 4554433 233333332 33445578888888887765444322 2234
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 84 SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 84 KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+++..++.+|.+-+- =+-...+-.|++|. |.. .++. ..++.=+...|-+.|..|..+|+=|+-.+...
T Consensus 219 ~~~~~Ll~~L~e~~E-----W~Qi~IL~lL~~y~--P~~-~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 219 EWVNRLVYHLPECNE-----WGQLYILELLAAQR--PSD-KESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHhhcCCh-----HHHHHHHHHHHhcC--CCC-cHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 444555555554431 13335666667663 322 1222 23444455557777888888888887776543
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---hc--CCccchhhHHHHHHHHHHhhhhHHHHhHHHH-----------------H---
Q 007426 164 DNWRFASDEMVNKVCQNVAGA---LE--EKSTQTNSHMGLVMALAKHNALIVEAYARLL-----------------I--- 218 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~ka---L~--~ks~qtkAhl~LV~ALs~~n~~iiea~g~~L-----------------l--- 218 (604)
-+.+++..++.|+.+. |. ++..|..++-. +-.+++..+.++..+...+ |
T Consensus 287 -----~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 287 -----CSQELIERCTVRVNTALLTLSRRDAETQYIVCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred -----CCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 1346777777776542 22 24455544322 2344555666666665421 0
Q ss_pred ------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426 219 ------QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 219 ------~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I 292 (604)
.-++.-|.+-+.+.|-..+..|+.+|+.++... ..-..+|+..|-..=-++...| .|++..-|.|
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~~v----~e~i~vik~I 431 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVAPDCANLLLQIVDRRPELL----PQVVTAAKDI 431 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCchhH----HHHHHHHHHH
Confidence 112222333333568899999999999998544 3345677777655444555444 3556666666
Q ss_pred hhc
Q 007426 293 AAE 295 (604)
Q Consensus 293 a~~ 295 (604)
-.+
T Consensus 432 lrk 434 (746)
T PTZ00429 432 VRK 434 (746)
T ss_pred HHH
Confidence 443
No 31
>PF05536 Neurochondrin: Neurochondrin
Probab=93.86 E-value=3 Score=47.20 Aligned_cols=240 Identities=15% Similarity=0.208 Sum_probs=143.0
Q ss_pred CChHHHHHHhhhcCCchhHHH-HHHHHHHHHhhcCCCC--h--------hHHHhhhccCCCCC--C---CchhhHHHHHH
Q 007426 5 LSPILRQELANLDKDADSRKS-AMKALKSYVKDLDSKA--I--------PLFLAQVSETKENG--S---VSGEYTISLYE 68 (604)
Q Consensus 5 lsp~~rqeL~KLs~DRDT~~i-A~~eLesiak~Ld~dt--l--------P~FLscV~dtd~~~--s---~vRke~I~Lle 68 (604)
-++.+.+++.=|..-+||++. |+-=+.+.++.-|.+. . |.||.++.-|.... . .-+.=++.++.
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 357788888888766799998 4555555555433211 1 68999999884321 1 22455677888
Q ss_pred HHHHHhCCCCc--ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc
Q 007426 69 VLARVHGANIV--PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS 145 (604)
Q Consensus 69 ~LArvHG~~ia--PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q 145 (604)
.+|+ ...++ |.+-..+-.++..|+.+++ ..+-+=|-....+++.+ +++....+. .-+.+|++++..+
T Consensus 83 ~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~-------~~G~~aLl~~g~v~~L~ei~~~~ 152 (543)
T PF05536_consen 83 AFCR--DPELASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASS-------PEGAKALLESGAVPALCEIIPNQ 152 (543)
T ss_pred HHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcC-------cHhHHHHHhcCCHHHHHHHHHhC
Confidence 8877 23333 3333334445555655544 11345666666666622 233333333 2677999999996
Q ss_pred cchhhHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhH--HHHh----HHH
Q 007426 146 QESLTAGAALCLKALVDSD--NWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALI--VEAY----ARL 216 (604)
Q Consensus 146 qe~vQsGAALCLAAlVEs~--nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~i--iea~----g~~ 216 (604)
.........+.+..+.... .|. .....+..+.++++..+...+...| -.+.+..++...-+.. .... ...
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 6666666666665555443 565 3334556888888888886666655 4566665555444211 1111 123
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh
Q 007426 217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS 258 (604)
Q Consensus 217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s 258 (604)
+...+..+|.. --.-+.|-+|......++...+.+.|..
T Consensus 232 l~~gl~~iL~s---r~~~~~R~~al~Laa~Ll~~~G~~wl~~ 270 (543)
T PF05536_consen 232 LRKGLRDILQS---RLTPSQRDPALNLAASLLDLLGPEWLFA 270 (543)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhChHhhcC
Confidence 55556677773 2335789999998888887777655543
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.41 E-value=5.4 Score=44.40 Aligned_cols=217 Identities=15% Similarity=0.212 Sum_probs=137.6
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhhcC---CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHH
Q 007426 10 RQELANLDKDADSRKSAMKALKSYVKDLD---SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSI 85 (604)
Q Consensus 10 rqeL~KLs~DRDT~~iA~~eLesiak~Ld---~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KI 85 (604)
...|.+|. ..+.+--++.+|+..+..-. .-..+..+.|+.+.+. ..=..|..+|..+-..+ ++.+ ++++
T Consensus 6 ~~~l~~l~-~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~---e~v~~~~~iL~~~l~~~~~~~l---~~~~ 78 (503)
T PF10508_consen 6 NELLEELS-SKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNR---EQVELICDILKRLLSALSPDSL---LPQY 78 (503)
T ss_pred HHHHHHHh-cccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcCh---HHHHHHHHHHHHHHhccCHHHH---HHHH
Confidence 34566676 66777777888877555433 2223557777774422 11244555555444433 4444 8899
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+..+.+-|..++. .||.-|.+.++-+++.- ++.-.++ ..+..-+..+|......|+.-|+-.|+.+...
T Consensus 79 ~~~L~~gL~h~~~--~Vr~l~l~~l~~~~~~~-------~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 79 QPFLQRGLTHPSP--KVRRLALKQLGRIARHS-------EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHhcCC-------HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 9999999987764 46887777766655331 1111111 23667788999999999999999999999875
Q ss_pred CCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 164 DNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 164 ~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
.. .-..++. .+...+..++...+-..+ --+.++.-++++.+...+.... .++..++..|+ ++|==.++.|
T Consensus 150 ~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~----~dDiLvqlna 222 (503)
T PF10508_consen 150 PE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD----SDDILVQLNA 222 (503)
T ss_pred ch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc----CccHHHHHHH
Confidence 21 1111211 236667777776333222 3556677777777666443332 27788888888 7899999999
Q ss_pred HHHHHHHHh
Q 007426 241 IQMLNFLMK 249 (604)
Q Consensus 241 AeaL~~la~ 249 (604)
.|+|..|+.
T Consensus 223 lell~~La~ 231 (503)
T PF10508_consen 223 LELLSELAE 231 (503)
T ss_pred HHHHHHHHc
Confidence 999999986
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.25 E-value=0.86 Score=37.13 Aligned_cols=83 Identities=20% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHHHhh-cCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh
Q 007426 180 NVAGAL-EEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS 258 (604)
Q Consensus 180 Rv~kaL-~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s 258 (604)
.+.+.| ++++...+ ..++.+|.+.. ....++..++.|+ .+||..|.+|+.+|..+-
T Consensus 3 ~L~~~l~~~~~~~vr--~~a~~~L~~~~-------~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVR--AEAARALGELG-------DPEAIPALIELLK----DEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHTSSSHHHH--HHHHHHHHCCT-------HHHHHHHHHHHHT----SSSHHHHHHHHHHHHCCH----------
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHcC-------CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhC----------
Confidence 455666 55544433 33444444442 2345777788887 799999999999999752
Q ss_pred hHHHHHHHHH-hccCCCccchhHHHHHHH
Q 007426 259 ELELIIEGME-NCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 259 e~~S~I~~LE-~cRfDKVk~VR~am~eAL 286 (604)
-...+..|. ..+.|+-..||.++.+||
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 122333333 366778888999999987
No 34
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.23 E-value=0.3 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426 217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS 250 (604)
Q Consensus 217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~ 250 (604)
|++..++.|+ ..+|..|.+|+++|..|+..
T Consensus 1 llp~l~~~l~----D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN----DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-----SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC----CCCHHHHHHHHHHHHHHHhh
Confidence 4677888888 68999999999999999864
No 35
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.07 E-value=5.1 Score=46.55 Aligned_cols=254 Identities=15% Similarity=0.191 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHHHh-hcCCCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHhCCCCcc-----cHHHHHHHHHhhc
Q 007426 22 SRKSAMKALKSYVK-DLDSKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVHGANIVP-----QIDSIMTTITKTL 93 (604)
Q Consensus 22 T~~iA~~eLesiak-~Ld~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvHG~~iaP-----hL~KImstIVRRL 93 (604)
--++|..-|-.||+ .|....-|-|.--+-+. ++.....+.+++-.++. |-.+..| .---|+-.||---
T Consensus 110 ~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy----~ces~~Pe~li~~sN~il~aiv~ga 185 (858)
T COG5215 110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY----HCESEAPEDLIQMSNVILFAIVMGA 185 (858)
T ss_pred HHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH----HhhccCHHHHHHHhhHHHHHHHHhh
Confidence 34566667777776 34555566666555443 23223457777766554 5556666 2233444554433
Q ss_pred cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc-----------
Q 007426 94 ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD----------- 162 (604)
Q Consensus 94 sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE----------- 162 (604)
....-+-.||-|--++...--.++..--..|++-.- |..-.+|+--+..+.+|..|=-||-+.+-
T Consensus 186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322246755443333211122212222333222 22223344444445555555555544321
Q ss_pred ------------cCC----------C--------------CCCC----------HHHHHHHHHHHHHhhcCCccch----
Q 007426 163 ------------SDN----------W--------------RFAS----------DEMVNKVCQNVAGALEEKSTQT---- 192 (604)
Q Consensus 163 ------------s~n----------w--------------r~Ap----------~elv~rlc~Rv~kaL~~ks~qt---- 192 (604)
+.| | +++| ...+.+++|.+.++|.+.+.-+
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 111 3 2333 1235679999999998744433
Q ss_pred -hhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhcc
Q 007426 193 -NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQ 271 (604)
Q Consensus 193 -kAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cR 271 (604)
+-||... +-.++ -.+.-|..+++-.+.+....+.++||..|-||+-|+.++|..=+...+.......+..+|+--
T Consensus 342 Wn~smaA~-sCLql---faq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m 417 (858)
T COG5215 342 WNPSMAAS-SCLQL---FAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM 417 (858)
T ss_pred cchhhhHH-HHHHH---HHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence 2455433 22222 224455667777888888888899999999999999999977666677767788899999999
Q ss_pred CCCccchhHHHHHHHH
Q 007426 272 SDQMAYVKGASLEALQ 287 (604)
Q Consensus 272 fDKVk~VR~am~eALq 287 (604)
.|.+-.|.+..-.++-
T Consensus 418 ~D~~l~vk~ttAwc~g 433 (858)
T COG5215 418 SDSCLWVKSTTAWCFG 433 (858)
T ss_pred ccceeehhhHHHHHHH
Confidence 9999999998877764
No 36
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=15 Score=41.94 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=163.2
Q ss_pred hhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc---cHHHHHHHHHh
Q 007426 15 NLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP---QIDSIMTTITK 91 (604)
Q Consensus 15 KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP---hL~KImstIVR 91 (604)
-|+ |.|++.+.+..|.+....--+-.++.-|.|+.+++...+ .++=|.=.+..|..-+..++| -+...+-+.--
T Consensus 189 qls-~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~--~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ 265 (533)
T KOG2032|consen 189 QLS-DNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEK--ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLAN 265 (533)
T ss_pred hcc-cCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhc--ccchHHHHHHHHHHhCcccccccccHHHHHHHHHH
Confidence 366 999999999999999888878789999999998877544 455566677788888888776 67777777778
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccC-CCCCCC
Q 007426 92 TLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSD-NWRFAS 170 (604)
Q Consensus 92 RLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~-nwr~Ap 170 (604)
+.+||+-++ =+.||.--+-..+- + |.--.--+..++.++.+-|.|-+ ++.|+.-|=.||+.+++.. +| +=
T Consensus 266 ka~dp~a~~-r~~a~r~L~~~as~-~--P~kv~th~~~~ldaii~gL~D~~---~~~V~leam~~Lt~v~~~~~~~--~l 336 (533)
T KOG2032|consen 266 KATDPSAKS-RGMACRGLGNTASG-A--PDKVRTHKTTQLDAIIRGLYDDL---NEEVQLEAMKCLTMVLEKASND--DL 336 (533)
T ss_pred hccCchhHH-HHHHHHHHHHHhcc-C--cHHHHHhHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHhhhhc--ch
Confidence 888888643 24566554443331 1 11100112223444444444433 2789999999999999863 23 22
Q ss_pred HHHHHHHHHHHHHhhcC--CccchhhHHHHHHHHHHhhhh------H--HHHhHHH------------------------
Q 007426 171 DEMVNKVCQNVAGALEE--KSTQTNSHMGLVMALAKHNAL------I--VEAYARL------------------------ 216 (604)
Q Consensus 171 ~elv~rlc~Rv~kaL~~--ks~qtkAhl~LV~ALs~~n~~------i--iea~g~~------------------------ 216 (604)
...+-.+..|+-.++++ +.+++. -+.|.++|+++-+. + +-..+++
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~a-a~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAA-AFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhh-HHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 23333556666666664 223333 33455666654321 0 0100000
Q ss_pred ----------HHH--------------------------HHHHHhcC---CCCCCCH-HHHHHHHHHHHHHHhhcCCCch
Q 007426 217 ----------LIQ--------------------------SGLRILNA---GPGEANS-QKRLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 217 ----------Ll~--------------------------S~l~~L~~---~~~ssDW-q~RKAAAeaL~~la~~~d~~~L 256 (604)
+.+ ..+-++.+ -+-++.| +.|-||--+-..+-.++.++ .
T Consensus 416 p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~-~ 494 (533)
T KOG2032|consen 416 PNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRA-A 494 (533)
T ss_pred chhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHH-H
Confidence 001 00111111 1235789 88988888877776666543 3
Q ss_pred hhh--HHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 257 FSE--LELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 257 ~se--~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
.+. ..-++..|-..++|--+.|++++-+|+++-
T Consensus 495 c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 495 CSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence 333 356789999999999999999999999874
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=14 Score=42.12 Aligned_cols=263 Identities=21% Similarity=0.225 Sum_probs=151.9
Q ss_pred hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
|++.+.|..=+ .|=+..|+=+|-.||.+ |+...+++.|..+...+. -.-.+...-.|.-||| |..=
T Consensus 155 p~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--~~~lRn~tW~LsNlcr--gk~P 228 (514)
T KOG0166|consen 155 PIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--LSMLRNATWTLSNLCR--GKNP 228 (514)
T ss_pred HHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--hHHHHHHHHHHHHHHc--CCCC
Confidence 44444444332 34444555555555432 378889999999986655 1246777788888887 3345
Q ss_pred ccc---HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh-hhchhHHhhhcccchhhHHHH
Q 007426 79 VPQ---IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQESLTAGAA 154 (604)
Q Consensus 79 aPh---L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~vQsGAA 154 (604)
.|+ +..|+..+.+=|.+.| -.-|+|++-||+ |+.|.+. |.-..++.+ +|.=|.+.|++..-.++.-|=
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D-----~~Vl~Da~WAls-yLsdg~n--e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTD-----EEVLTDACWALS-YLTDGSN--EKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHH-HHhcCCh--HHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 555 5677888888888888 356677666665 7777433 333334433 666677777777666774332
Q ss_pred HHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCcc--chh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHh
Q 007426 155 LCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKST--QTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRIL 225 (604)
Q Consensus 155 LCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~--qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L 225 (604)
-++--.|- ..++.-+ .+++-+..+|.+... .-| |... +.=+...|..-+.+. -+.+++-.+.+|
T Consensus 301 RaiGNIvt------G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~-iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 301 RAIGNIVT------GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT-ISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred hhccceee------ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH-HHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 23333222 2343222 356667777774211 122 2111 111111111111111 124788889999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhH--HHHHHHHHHHHhhhcCC
Q 007426 226 NAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKG--ASLEALQTAKRIAAENG 297 (604)
Q Consensus 226 ~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~--am~eALq~wK~Ia~~~g 297 (604)
+ +++.-+||-|+=||.-+....+++-|. ++ -.||+.|-..= .++.+|- .+.+||+.-.++..+.+
T Consensus 374 ~----~~ef~~rKEAawaIsN~ts~g~~~qi~-yLv~~giI~plcdlL--~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 374 Q----TAEFDIRKEAAWAISNLTSSGTPEQIK-YLVEQGIIKPLCDLL--TCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred h----ccchHHHHHHHHHHHhhcccCCHHHHH-HHHHcCCchhhhhcc--cCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 9 789999999999999976555544333 33 33777776554 5555554 45666666666655543
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=91.27 E-value=26 Score=41.55 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhhc--CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHH
Q 007426 9 LRQELANLDKDADSRKSAMKALKSYVKDL--DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIM 86 (604)
Q Consensus 9 ~rqeL~KLs~DRDT~~iA~~eLesiak~L--d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIm 86 (604)
+|.+|+ +.|...++-|++ +++-.. --|.-+.|-..|--...++-..||-+-=.+...|..|.+. .--.+
T Consensus 37 Lr~~L~--s~~~~~kk~alK---kvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaI 107 (746)
T PTZ00429 37 LQNDLN--GTDSYRKKAAVK---RIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAV 107 (746)
T ss_pred HHHHHH--CCCHHHHHHHHH---HHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHH
Confidence 445553 224444444544 444333 3455555554444333333334554444444555555332 22347
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426 87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW 166 (604)
Q Consensus 87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw 166 (604)
.++.|-|.|++- .+|.- ++.+|+.- .. ..++..+..||-.+|....-.|---||+|++++..-+
T Consensus 108 Ntl~KDl~d~Np--~IRaL---ALRtLs~I-r~--------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-- 171 (746)
T PTZ00429 108 NTFLQDTTNSSP--VVRAL---AVRTMMCI-RV--------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-- 171 (746)
T ss_pred HHHHHHcCCCCH--HHHHH---HHHHHHcC-Cc--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--
Confidence 888898988872 23432 34444421 11 2466778999999999888899999999999998752
Q ss_pred CCCCHHHH--HHHHHHHHHhhcCCccchh
Q 007426 167 RFASDEMV--NKVCQNVAGALEEKSTQTN 193 (604)
Q Consensus 167 r~Ap~elv--~rlc~Rv~kaL~~ks~qtk 193 (604)
| +++ .++.+++.++|.+++...+
T Consensus 172 ---p-elv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 172 ---M-QLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred ---c-ccccccchHHHHHHHhcCCCccHH
Confidence 2 232 2456667777877654443
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.58 E-value=2.2 Score=34.75 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred chhHHhh-hcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhH
Q 007426 136 KPLSDSL-LGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYA 214 (604)
Q Consensus 136 KPL~EaL-~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g 214 (604)
.+|++.| .+.+..+..-|+-||. + .... ++.+.+..+|++++... -..++.+|.+++ .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~---~-----~~~~----~~~~~L~~~l~d~~~~v--r~~a~~aL~~i~-------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALG---E-----LGDP----EAIPALIELLKDEDPMV--RRAAARALGRIG-------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHH---C-----CTHH----HHHHHHHHHHTSSSHHH--HHHHHHHHHCCH-------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---H-----cCCH----hHHHHHHHHHcCCCHHH--HHHHHHHHHHhC-------C
Confidence 4688888 6666778988888888 2 1222 55677777888765433 345555666653 3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426 215 RLLIQSGLRILNAGPGEANSQKRLLAIQMLN 245 (604)
Q Consensus 215 ~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~ 245 (604)
...++...+.|.+ +.+|..|.+|+++|.
T Consensus 61 ~~~~~~L~~~l~~---~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQD---DDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHhhcC
Confidence 3456777777874 356677999999984
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.92 E-value=1.9 Score=36.07 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=60.9
Q ss_pred HHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 007426 177 VCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR 254 (604)
Q Consensus 177 lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~ 254 (604)
+.+.+.+.|.+.+...+ .-+..++.++...+......-. ..++..+++|. .+|...|..|+.+|..|+.... .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~~~~~-~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLAAGPE-D 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHccCcH-H
Confidence 55667777776653332 2333344444443222222222 45778888888 5799999999999999874332 1
Q ss_pred chhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 255 SIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 255 ~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
...... ..++..|..+=.++-..||+.+..+|.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111111 235555555555555677777766654
No 41
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.07 E-value=1.5 Score=39.98 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=60.6
Q ss_pred hHHHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 43 PLFLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 43 P~FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
-.|=+.+.|.+...+ .-|+.+|+=++.+-+.+|..|.+.+||||+.+--.|..++ +|..|-++-..+-+++.
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e----L~~~al~~W~~~i~~L~ 86 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE----LRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhCC
Confidence 345566666653333 4499999999999999999999999999999999998887 79999999999998875
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.63 E-value=14 Score=37.86 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHH
Q 007426 26 AMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQA 105 (604)
Q Consensus 26 A~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~A 105 (604)
+..+++..+..+...+++..+..+.+. +..+|..+...++.+ -....+..+.+.|.|.+. .||..
T Consensus 29 ~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~--~vr~~ 93 (335)
T COG1413 29 ALAELDDLILELAPEAADELLKLLEDE---DLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDP--RVRDA 93 (335)
T ss_pred HHhccchhhcccchhhHHHHHHHHcCC---CHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCH--HHHHH
Confidence 334444444433323444444444432 345666665553322 233456666677777763 56887
Q ss_pred HHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh-cccchhhHHHHHHHHHHhcc
Q 007426 106 CSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL-GSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 106 C~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~-~qqe~vQsGAALCLAAlVEs 163 (604)
++.+.+.+- + ...+.||.+.|. ..++.|...||..|.++-+.
T Consensus 94 a~~aLg~~~----~------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 94 AADALGELG----D------------PEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHHHHHccC----C------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 777333222 1 235677777777 47778888888888887775
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.58 E-value=0.61 Score=35.91 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 234 SQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 234 Wq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
|..|.+|+.+|..++... ++.+..+...++..|-.+=-|.=..||.++..||.
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 899999999999976444 45677777888888887766666799999999884
No 44
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.31 E-value=5.8 Score=42.86 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhH
Q 007426 60 GEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLS 139 (604)
Q Consensus 60 Rke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~ 139 (604)
.=..|..+..|+++|...+.|.|-+++-+||+.|+.+-|+| -|.||+ +++.|..+.- ..+. .-|.+|.
T Consensus 105 ~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~V-sraA~~-t~~difs~ln---------~~i~-~~ld~lv 172 (334)
T KOG2933|consen 105 KVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAV-SRAACM-TLADIFSSLN---------NSID-QELDDLV 172 (334)
T ss_pred HhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHH-HHHHHHHHHH---------HHHH-HHHHHHH
Confidence 44678889999999999999999999999999999999876 477886 3455554432 2233 3777777
Q ss_pred Hhhhccc----chhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcC--CccchhhHHHHHHHHHHhh-hhHHHH
Q 007426 140 DSLLGSQ----ESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEE--KSTQTNSHMGLVMALAKHN-ALIVEA 212 (604)
Q Consensus 140 EaL~~qq----e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~--ks~qtkAhl~LV~ALs~~n-~~iiea 212 (604)
-.|.+.- ..+---|==.|-|+|... .|..+++.|.+ .+.. +..++++-+....-+...+ ..+.++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~v----tp~~~L~~L~~----~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNHV----TPQKLLRKLIP----ILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhcc----ChHHHHHHHHH----HHhhhchhhhhhhhccccccceeccccchhhH
Confidence 7777643 234445555677888864 24445555444 4443 3334444333333333332 335566
Q ss_pred hHHHHHHHHHHHhcCCC
Q 007426 213 YARLLIQSGLRILNAGP 229 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~ 229 (604)
|-.-+++++.+=+.+.+
T Consensus 245 ~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKL 261 (334)
T ss_pred hHHHHHHHHHhhhcccc
Confidence 66677788777666544
No 45
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.23 E-value=2 Score=50.00 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426 18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA 97 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd 97 (604)
+|.--|..-....--.|+.|--+.+-+||..+|-++++ ...|.-||++...+|.+-|+.+.||++-+|..|-+-|.|-.
T Consensus 293 ~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkS-w~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~ 371 (975)
T COG5181 293 KDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKS-WEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccc-hhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccc
Confidence 34445555566666778888888899999999987754 24599999999999999999999999999999999998864
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhh
Q 007426 98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSL 142 (604)
Q Consensus 98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL 142 (604)
..||=--+.+..+||.... |-+ -+.|.++.+||-+-.
T Consensus 372 --~~vRi~tA~alS~lae~~~-Pyg-----ie~fd~vl~pLw~g~ 408 (975)
T COG5181 372 --RFVRIDTANALSYLAELVG-PYG-----IEQFDEVLCPLWEGA 408 (975)
T ss_pred --eeeeehhHhHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHHH
Confidence 3467666666666664322 222 245777888887643
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=87.09 E-value=2.9 Score=49.65 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhh
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPL 102 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~v 102 (604)
|..-....--.|..|--..+-+||..+|-++.+ .-.|.-||++..-+|.+-|+.+.|||.-+|.-|-.-|.|-. ..|
T Consensus 493 Rnttarafavvasalgip~llpfLkavc~SkkS-wqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~--qkV 569 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGIPALLPFLKAVCGSKKS-WQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQ--QKV 569 (1172)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhccccc-hhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccc--hhh
Confidence 444444455566677777788999999977654 24599999999999999999999999999999888888764 235
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhh
Q 007426 103 QQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSL 142 (604)
Q Consensus 103 R~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL 142 (604)
|---+-++++||-... |-+ -+.|.+++|||-+-.
T Consensus 570 R~itAlalsalaeaa~-Pyg-----ie~fDsVlkpLwkgi 603 (1172)
T KOG0213|consen 570 RTITALALSALAEAAT-PYG-----IEQFDSVLKPLWKGI 603 (1172)
T ss_pred hhHHHHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHHH
Confidence 6555555555553221 222 246788999998754
No 47
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=17 Score=46.14 Aligned_cols=224 Identities=16% Similarity=0.213 Sum_probs=125.1
Q ss_pred HHHHHHHHhhcCCCChhHHHhhhccCC-CC-CCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHH
Q 007426 27 MKALKSYVKDLDSKAIPLFLAQVSETK-EN-GSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQ 104 (604)
Q Consensus 27 ~~eLesiak~Ld~dtlP~FLscV~dtd-~~-~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~ 104 (604)
|+.++.++..+|-..+--....|.+.- .. +-+.|--|=+.+..|+.-.|--+-|+-+|.|....--++|-.++ +|-
T Consensus 1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNes--v~k 1295 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNES--VRK 1295 (1702)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHH--HHH
Confidence 345556666666555444445555542 21 23567778888888888899999999999999999999998875 599
Q ss_pred HHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchh-hHHHHHHHHHHhccCCCCCCCHHHHH---HHHHH
Q 007426 105 ACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESL-TAGAALCLKALVDSDNWRFASDEMVN---KVCQN 180 (604)
Q Consensus 105 AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~v-QsGAALCLAAlVEs~nwr~Ap~elv~---rlc~R 180 (604)
+|+-++|-|+++.. ++.. ..+..-+..=++++.++. ++--|.-.. |-+ ++++.+=| .+.|-
T Consensus 1296 afAsAmG~L~k~Ss-----~dq~----qKLie~~l~~~l~k~es~~siscatis~--Ian----~s~e~Lkn~asaILPL 1360 (1702)
T KOG0915|consen 1296 AFASAMGYLAKFSS-----PDQM----QKLIETLLADLLGKDESLKSISCATISN--IAN----YSQEMLKNYASAILPL 1360 (1702)
T ss_pred HHHHHHHHHHhcCC-----hHHH----HHHHHHHHHHHhccCCCccchhHHHHHH--HHH----hhHHHHHhhHHHHHHH
Confidence 99999999998854 2222 334444444455555543 333222221 221 22332211 34444
Q ss_pred HHHhhcCCccchhh---HHHHHHH-HHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCC---
Q 007426 181 VAGALEEKSTQTNS---HMGLVMA-LAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDP--- 253 (604)
Q Consensus 181 v~kaL~~ks~qtkA---hl~LV~A-Ls~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~--- 253 (604)
+.=+..+. +|+ +..=|-. ++.-+..++.-|. ..-...+....+.++.|..||-+|-++..++.....
T Consensus 1361 iFLa~~ee---~Ka~q~Lw~dvW~e~vsggagtvrl~~---~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~ 1434 (1702)
T KOG0915|consen 1361 IFLAMHEE---EKANQELWNDVWAELVSGGAGTVRLYL---LEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAP 1434 (1702)
T ss_pred HHHHHhHH---HHHHHHHHHHHHHHhCCCCcchhhhhH---HHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCC
Confidence 44333332 222 1111111 1111112222222 222333444444477799999999999999865431
Q ss_pred -CchhhhHHHHHHHHHhccCC
Q 007426 254 -RSIFSELELIIEGMENCQSD 273 (604)
Q Consensus 254 -~~L~se~~S~I~~LE~cRfD 273 (604)
+.|.......+..|..+=||
T Consensus 1435 ~p~ilkl~~~ll~~L~GRiwd 1455 (1702)
T KOG0915|consen 1435 IPVILKLALSLLDTLNGRIWD 1455 (1702)
T ss_pred hHHHHHHHHHHHHHhhccccc
Confidence 12333445555666666655
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.95 E-value=18 Score=45.04 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=142.1
Q ss_pred hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC
Q 007426 42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT 121 (604)
Q Consensus 42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~ 121 (604)
+|...+||..-+.+ ..+-.+|.|+..|++.--+-. -|.+|+=.+|-=+.|+.- .||.+-..++..+-.-+.|-
T Consensus 424 vs~lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a--~Vra~Al~Tlt~~L~~Vr~~- 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTI--QTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEA--DVRATALETLTELLALVRDI- 496 (1431)
T ss_pred HHHHHHHHHhhhcc--hhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchH--HHHHHHHHHHHHHHhhccCC-
Confidence 56666777654443 458999999999999876654 478888899998899984 47876666666666555551
Q ss_pred CccccchhhHHhhhchhHHhhhccc--chhhHHHHHHHHHHhccCCCC-------------C------CCH--------H
Q 007426 122 TPEDKKRHIIHSLCKPLSDSLLGSQ--ESLTAGAALCLKALVDSDNWR-------------F------ASD--------E 172 (604)
Q Consensus 122 ~~~~~~~~ii~sl~KPL~EaL~~qq--e~vQsGAALCLAAlVEs~nwr-------------~------Ap~--------e 172 (604)
.+.+ ..||....=|-.--|...+ ..|-+.-|-|||.+-+.++-. . ++. .
T Consensus 497 ~~~d--aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 497 PPSD--ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA 574 (1431)
T ss_pred Cccc--chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence 1222 3588888888777777763 568999999999887653310 0 111 1
Q ss_pred HHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007426 173 MVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-----LLIQSGLRILNAGPGEANSQKRLLAIQMLNF 246 (604)
Q Consensus 173 lv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-----~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~ 246 (604)
+++-|-..|..+|.++...-| ++|.-+.=|-.. .|. -||+-...+|.+ .||+.|-|=.|-|.-
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F-------FGk~ksND~iLshLiTfLND----kDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF-------FGKEKSNDVILSHLITFLND----KDWRLRGAFFDSIVG 643 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-------hhhcccccchHHHHHHHhcC----ccHHHHHHHHhhccc
Confidence 222344445555555442222 333332221111 222 378888899994 699999999999998
Q ss_pred HHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 247 LMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 247 la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
|+-.++.+.+.+.+ ...++.| -|.=..|=..|.++|..
T Consensus 644 vsi~VG~rs~seyllPLl~Q~l----tD~EE~Viv~aL~~ls~ 682 (1431)
T KOG1240|consen 644 VSIFVGWRSVSEYLLPLLQQGL----TDGEEAVIVSALGSLSI 682 (1431)
T ss_pred eEEEEeeeeHHHHHHHHHHHhc----cCcchhhHHHHHHHHHH
Confidence 88888888777665 3344433 35555555555554443
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=15 Score=41.87 Aligned_cols=240 Identities=17% Similarity=0.174 Sum_probs=137.4
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426 9 LRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP 80 (604)
Q Consensus 9 ~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP 80 (604)
+-+.|.+=. ++..+--|+-.|-.||.. .+++.+|.|+.++.++.. .++++++--|+-+|. +. |
T Consensus 114 lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~---~v~eQavWALgNIag---ds--~ 184 (514)
T KOG0166|consen 114 LVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA---DVREQAVWALGNIAG---DS--P 184 (514)
T ss_pred HHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH---HHHHHHHHHHhcccc---CC--h
Confidence 334444333 466666688888888874 368899999999997655 488999887776653 11 2
Q ss_pred cH------HHHHHHHHhhccCCCC-ChhhHHHHHHHHHHHHhhcC--CCCCccccchhhHHhhhchhHHhhhcccchhhH
Q 007426 81 QI------DSIMTTITKTLASSAG-SFPLQQACSRVVPAIARYGI--DPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTA 151 (604)
Q Consensus 81 hL------~KImstIVRRLsDsdS-S~~vR~AC~kvv~ALAry~i--dp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQs 151 (604)
+. ..+|..+++-|..++. ++ +|. ++=+|+-.+. +|+.+-+.-.+++ .=|+-.|-+..+.|..
T Consensus 185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~-lRn----~tW~LsNlcrgk~P~P~~~~v~~iL----p~L~~ll~~~D~~Vl~ 255 (514)
T KOG0166|consen 185 DCRDYVLSCGALDPLLRLLNKSDKLSM-LRN----ATWTLSNLCRGKNPSPPFDVVAPIL----PALLRLLHSTDEEVLT 255 (514)
T ss_pred HHHHHHHhhcchHHHHHHhccccchHH-HHH----HHHHHHHHHcCCCCCCcHHHHHHHH----HHHHHHHhcCCHHHHH
Confidence 11 1244555565555543 22 343 4556663333 3655534433333 2333444556667888
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHH--HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcC
Q 007426 152 GAALCLKALVDSDNWRFASDEMVN--KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRILNA 227 (604)
Q Consensus 152 GAALCLAAlVEs~nwr~Ap~elv~--rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~ 227 (604)
-|+-.|.-+.|..|- --.+|- .+|+|+..+|+.++..+. +-|..+|-++..+..-..+- ...+|++...+|..
T Consensus 256 Da~WAlsyLsdg~ne---~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 256 DACWALSYLTDGSNE---KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHHHHHhcCChH---HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 888889889886331 112332 599999999998775554 34444554333332211111 11234555555552
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCch----h-hhHHHHHHHHHhccCC
Q 007426 228 GPGEANSQKRLLAIQMLNFLMKSLDPRSI----F-SELELIIEGMENCQSD 273 (604)
Q Consensus 228 ~~~ssDWq~RKAAAeaL~~la~~~d~~~L----~-se~~S~I~~LE~cRfD 273 (604)
+..---||.|+=+|.-|.+ ...+-+ . ..+...++.|++--||
T Consensus 333 ---s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~ 379 (514)
T KOG0166|consen 333 ---SPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFD 379 (514)
T ss_pred ---CcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchH
Confidence 2333478889888888753 222111 1 1346677777777765
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.67 E-value=7.3 Score=34.52 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=52.5
Q ss_pred CCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426 54 ENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 54 ~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry 116 (604)
++..|+|-|+|.++..|-+.+- ..+-++++|+.-...-|+|+|| + |-=+|.+..++|+..
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-y-VYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-Y-VYLNAIKGLAALADR 73 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-h-HHHHHHHHHHHHHHH
Confidence 4446899999999999999886 6788899999999999999996 4 578999999999955
No 51
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.37 E-value=3.7 Score=36.85 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 45 FLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 45 FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
|=..+.|-....+ .-|+.+|+=++.+-+..|..|.++.||||+++--.|..++ +|..|.++-.++-+++-
T Consensus 16 f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~----l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 16 FSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPE----LREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHHCC
Confidence 4444554222222 5699999999999999999999999999999999988885 79999999999988875
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=81.76 E-value=11 Score=35.92 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=68.1
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc-CCCCCccccchhhHHhhhc
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG-IDPTTPEDKKRHIIHSLCK 136 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~-idp~~~~~~~~~ii~sl~K 136 (604)
.+|-.+|-.++.|+.-|+..+=||++.|. +.|+|++ ..||..|.-++.-|.... +++ ++.++..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~----~~L~D~~--~~VR~~al~~Ls~Li~~d~ik~------k~~l~~~--- 67 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLY----KCLRDED--PLVRKTALLVLSHLILEDMIKV------KGQLFSR--- 67 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHH----HHHCCCC--HHHHHHHHHHHHHHHHcCceee------hhhhhHH---
Confidence 47899999999999999999989887765 6788887 358999988888887431 112 2223333
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 137 PLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 137 PL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+.-+|..+++.++.-|..|+..+...
T Consensus 68 -~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 68 -ILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 44466777888999999999988885
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=81.28 E-value=21 Score=34.16 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 007426 102 LQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180 (604)
Q Consensus 102 vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~R 180 (604)
||..+.-++|.|+ ||- .++.-++..|+.+|..+...|--.|.+||+.++..+--
T Consensus 4 vR~n~i~~l~DL~~r~~-----------~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-------------- 58 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYP-----------NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-------------- 58 (178)
T ss_pred HHHHHHHHHHHHHHhCc-----------HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--------------
Confidence 6888888888888 661 23445666777777777777777777777777764210
Q ss_pred HHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH
Q 007426 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL 260 (604)
Q Consensus 181 v~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~ 260 (604)
++.+ .++...+.+|. .+|+.-|..|...+..++...++..+...+
T Consensus 59 -----------------------k~k~--------~l~~~~l~~l~----D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 59 -----------------------KVKG--------QLFSRILKLLV----DENPEIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred -----------------------eehh--------hhhHHHHHHHc----CCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 1111 01233344455 478999999999999998876778888888
Q ss_pred HHHHHHHHhccCC
Q 007426 261 ELIIEGMENCQSD 273 (604)
Q Consensus 261 ~S~I~~LE~cRfD 273 (604)
..||-.|..+.-+
T Consensus 104 ~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 104 PELISSLNNCYEH 116 (178)
T ss_pred HHHHHHHhCcccc
Confidence 9999999988654
No 54
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.10 E-value=95 Score=38.89 Aligned_cols=237 Identities=15% Similarity=0.163 Sum_probs=152.4
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhh--------hccC-CCCCCCchhhHHHHHHHHHHHhCCCCccc
Q 007426 11 QELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQ--------VSET-KENGSVSGEYTISLYEVLARVHGANIVPQ 81 (604)
Q Consensus 11 qeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLsc--------V~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPh 81 (604)
.+.++-+ +.-+|+=|.+=|+..... ...-.|..+ |.|+ +..+++.++..+.-+..|-..|+.-..-.
T Consensus 660 ~~~e~~~-~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 660 PEFENSS-STKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HHhhccc-cHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444 566667777777666554 223333333 2222 44456778888888888889998556666
Q ss_pred HHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426 82 IDSIMTTITKTLASSAGS-FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL 160 (604)
Q Consensus 82 L~KImstIVRRLsDsdSS-~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl 160 (604)
++|.|..+|=-+.+-+=. =..+-+|-..++++..+.++. .|....++..|+.=|.+.|+++--.+.+-.=+.+..+
T Consensus 736 i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g---~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 736 IPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG---NEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc---ccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 777777777666444311 113349999999988777642 2224778999999999998887755433323333333
Q ss_pred h-ccCCCCCCCHHHHHHHHHHHHHhhcCC-ccchhhHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCCCCCHHHH
Q 007426 161 V-DSDNWRFASDEMVNKVCQNVAGALEEK-STQTNSHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPGEANSQKR 237 (604)
Q Consensus 161 V-Es~nwr~Ap~elv~rlc~Rv~kaL~~k-s~qtkAhl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~ssDWq~R 237 (604)
+ |..+ +-.++.+++|..-|+..|.+. .-.++|-++.+-.+...-+ ..+.++...||++.+..++ ...=--|
T Consensus 813 l~e~~~--~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~----d~k~~~r 886 (1176)
T KOG1248|consen 813 LQEFKN--ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH----DHKIKVR 886 (1176)
T ss_pred HHHHhc--cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH----hhhHHHH
Confidence 3 3333 578899999999999999864 4445566666665555554 4566777778899888777 3345677
Q ss_pred HHHHHHHHHHHhhcCCCchhhhH
Q 007426 238 LLAIQMLNFLMKSLDPRSIFSEL 260 (604)
Q Consensus 238 KAAAeaL~~la~~~d~~~L~se~ 260 (604)
++.-..|-.+..-.+...|..+.
T Consensus 887 ~Kvr~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred HHHHHHHHHHHHHhCHHHHHhhC
Confidence 88777777776555555555544
No 55
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.09 E-value=69 Score=36.73 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=123.3
Q ss_pred ChHHHHHHhhhcCC--chhHHHHHHHHHHHHhhcCCCChhH-----HHhhhccC-CC-CCCCchhhHHHHHHHHHHHhCC
Q 007426 6 SPILRQELANLDKD--ADSRKSAMKALKSYVKDLDSKAIPL-----FLAQVSET-KE-NGSVSGEYTISLYEVLARVHGA 76 (604)
Q Consensus 6 sp~~rqeL~KLs~D--RDT~~iA~~eLesiak~Ld~dtlP~-----FLscV~dt-d~-~~s~vRke~I~Lle~LArvHG~ 76 (604)
+++|++-|++++-+ .+.++.|+-+|-.+...= .-++.- .|--|.++ ++ .+..-++.|+|+++..++....
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 68899999999844 477888999988776532 223332 23334444 22 3345699999999999998876
Q ss_pred CCcccHHHHHHHHHhhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHH
Q 007426 77 NIVPQIDSIMTTITKTL---ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGA 153 (604)
Q Consensus 77 ~iaPhL~KImstIVRRL---sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGA 153 (604)
.+.- --+-+|.|.| .|+.=-+ +|.|=-+....||.| +|.. . |. ...|++ .+..++- .-|
T Consensus 364 ~l~D---stE~ai~K~Leaa~ds~~~v-~~~Aeed~~~~las~--~P~~------~-I~-~i~~~I---lt~D~~~-~~~ 425 (516)
T KOG2956|consen 364 RLFD---STEIAICKVLEAAKDSQDEV-MRVAEEDCLTTLASH--LPLQ------C-IV-NISPLI---LTADEPR-AVA 425 (516)
T ss_pred hhhc---hHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHhh--Cchh------H-HH-HHhhHH---hcCcchH-HHH
Confidence 6544 3455677777 4443212 454444444445544 3433 1 12 333443 2233333 235
Q ss_pred HH-HHHHHhccCCCCCCCHH----HHHHHHHHHHHhhcCCccch-h-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhc
Q 007426 154 AL-CLKALVDSDNWRFASDE----MVNKVCQNVAGALEEKSTQT-N-SHMGLVMALAKHNALIVEAYARLLIQSGLRILN 226 (604)
Q Consensus 154 AL-CLAAlVEs~nwr~Ap~e----lv~rlc~Rv~kaL~~ks~qt-k-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~ 226 (604)
++ ||.+++|. -+.| +|.++.|-+.++-++.+--- | |-+-||.-+.+++.-..++|.+.|-.+=+..|+
T Consensus 426 ~iKm~Tkl~e~-----l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Llq 500 (516)
T KOG2956|consen 426 VIKMLTKLFER-----LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQ 500 (516)
T ss_pred HHHHHHHHHhh-----cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHH
Confidence 56 99999997 4555 34478888999999755333 4 788888666666668889999887666555544
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.81 E-value=79 Score=32.67 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=101.3
Q ss_pred HHHHHHhhcCC-CChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHH
Q 007426 29 ALKSYVKDLDS-KAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQA 105 (604)
Q Consensus 29 eLesiak~Ld~-dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~A 105 (604)
=|+..-..+++ ..|...|..|--+ +.....+|+.+++-|+..|-........|++.++..+ .. +.. .|+-.
T Consensus 10 lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~-~~--~~~---~v~~~ 83 (298)
T PF12719_consen 10 LLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL-QK--DDE---EVKIT 83 (298)
T ss_pred HHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-Hh--CCH---HHHHH
Confidence 34444444443 2334445444422 3444579999999999999999988899998888777 32 322 47999
Q ss_pred HHHHHHHHH-hhcCCCCCcccc--chhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHH
Q 007426 106 CSRVVPAIA-RYGIDPTTPEDK--KRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFAS-DEMVNKVCQNV 181 (604)
Q Consensus 106 C~kvv~ALA-ry~idp~~~~~~--~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap-~elv~rlc~Rv 181 (604)
|.+++..|. .|+++......+ ...-...+.+-|.+.|..++..+|+-||-+++++.=+.-+ .+ ..++. ++
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~----~L 157 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLS----RL 157 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHH----HH
Confidence 999999888 787752222111 1222346788889999999888999999999999998765 33 44444 44
Q ss_pred HHhhcCCccchh
Q 007426 182 AGALEEKSTQTN 193 (604)
Q Consensus 182 ~kaL~~ks~qtk 193 (604)
.-+.=+|.+..+
T Consensus 158 ll~yF~p~t~~~ 169 (298)
T PF12719_consen 158 LLLYFNPSTEDN 169 (298)
T ss_pred HHHHcCcccCCc
Confidence 444444544443
No 57
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=79.73 E-value=16 Score=36.35 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhh
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPL 102 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~v 102 (604)
|+.|+.-|..++|.+++..+-.|...+.-+... .|..-.| -+|..| |.|+.. .+
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~------------------~~~~~~~---sLlt~i---l~Dp~~--kv 56 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVL------------------QGRPATP---SLLTCI---LKDPSP--KV 56 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCC------------------cCCCCCc---chhHHH---HcCCch--hH
Confidence 677899999999999999998888888843311 1111111 233333 468864 36
Q ss_pred HHHHHHHHHHHH----hhcCCCCCcc----------ccchhhHHhhhchhHHhhhcccch-hhHHHHHHHHHHhccCCCC
Q 007426 103 QQACSRVVPAIA----RYGIDPTTPE----------DKKRHIIHSLCKPLSDSLLGSQES-LTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 103 R~AC~kvv~ALA----ry~idp~~~~----------~~~~~ii~sl~KPL~EaL~~qqe~-vQsGAALCLAAlVEs~nwr 167 (604)
|.|=..++.+|= .|+.-+...+ .--+.++..+=+=|.-+|-.++.. +..-.==||+.+|++.++.
T Consensus 57 R~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~ 136 (182)
T PF13251_consen 57 RAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH 136 (182)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh
Confidence 887777777765 2332111000 111233444455555666555543 3333334999999999987
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHhh
Q 007426 168 FASDEMVNKVCQNVAGALEEKS-TQTNSHMGLVMALAKHN 206 (604)
Q Consensus 168 ~Ap~elv~rlc~Rv~kaL~~ks-~qtkAhl~LV~ALs~~n 206 (604)
--+.+++.++-..+.+.+..+. ....+-+...++|..+.
T Consensus 137 rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 137 RLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 7888999998888888888633 22336666666766554
No 58
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.62 E-value=1.6e+02 Score=35.58 Aligned_cols=172 Identities=17% Similarity=0.091 Sum_probs=115.2
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccc-hhhHHHHHHHHHHhccCCCCCCCHHHHHHH
Q 007426 99 SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE-SLTAGAALCLKALVDSDNWRFASDEMVNKV 177 (604)
Q Consensus 99 S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe-~vQsGAALCLAAlVEs~nwr~Ap~elv~rl 177 (604)
+-.+|.|=.+.++.++...- -..+.....+|...=..+.. .+.-|||-||.++++.- .+.-.-+++
T Consensus 492 ~wRvr~ail~~ip~la~q~~---------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~----G~~w~~~~~ 558 (759)
T KOG0211|consen 492 LWRVRLAILEYIPQLALQLG---------VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF----GSEWARLEE 558 (759)
T ss_pred hHHHHHHHHHHHHHHHHhhh---------hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh----CcchhHHHh
Confidence 45688999999999995421 12333445555544444443 57999999999999973 345556778
Q ss_pred HHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch
Q 007426 178 CQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 178 c~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L 256 (604)
-+++.+...++++.-. +-+..+-.|+.+-+. +.+-..|++-..+... ...-.-|.=+|.+|..+++.++.
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~--ei~~~~Llp~~~~l~~----D~vanVR~nvak~L~~i~~~L~~--- 629 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ--EITCEDLLPVFLDLVK----DPVANVRINVAKHLPKILKLLDE--- 629 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhcc--HHHHHHHhHHHHHhcc----CCchhhhhhHHHHHHHHHhhcch---
Confidence 8888888888754443 222222233333211 2233345565555555 56778999999999999988863
Q ss_pred hhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426 257 FSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 257 ~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I 292 (604)
..-.+-++.++|.-.-|.=.-||-.+..|.+.-+..
T Consensus 630 ~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 630 SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 333466778888888899999999999998876643
No 59
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.22 E-value=36 Score=37.61 Aligned_cols=115 Identities=20% Similarity=0.044 Sum_probs=75.9
Q ss_pred hchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhH
Q 007426 135 CKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYA 214 (604)
Q Consensus 135 ~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g 214 (604)
+..|+++|....+.|..++|-.|..+-+ . +..+.+.++|+.++- +.....+.++..+....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~----~a~~~L~~~L~~~~p--~vR~aal~al~~r~~~~----- 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG--------R----QAEPWLEPLLAASEP--PGRAIGLAALGAHRHDP----- 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc--------h----HHHHHHHHHhcCCCh--HHHHHHHHHHHhhccCh-----
Confidence 7889999988888899888888864322 2 334556777876542 12223334444443221
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 215 RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 215 ~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
...++..|+ ..|-+.|.+|+.+|..|- .. ..+. .|.....|.-+.||.++..++
T Consensus 149 ---~~~L~~~L~----d~d~~Vra~A~raLG~l~-~~--~a~~--------~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 149 ---GPALEAALT----HEDALVRAAALRALGELP-RR--LSES--------TLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred ---HHHHHHHhc----CCCHHHHHHHHHHHHhhc-cc--cchH--------HHHHHHcCCCHHHHHHHHHHH
Confidence 234556666 689999999999999863 22 1222 244558999999999999998
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.94 E-value=47 Score=39.83 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=116.0
Q ss_pred CCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhh
Q 007426 55 NGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSL 134 (604)
Q Consensus 55 ~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl 134 (604)
+.+++||-+|=++=-+.--+++.+-|-+||.+. +|-|||-+ |+.|-|.|++-|||. +|-++ .=
T Consensus 156 skpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~--V~SAAV~VICELArK--nPkny---------L~ 218 (877)
T KOG1059|consen 156 SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPS--VVSAAVSVICELARK--NPQNY---------LQ 218 (877)
T ss_pred CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCch--HHHHHHHHHHHHHhh--CCccc---------cc
Confidence 347999999999999999999999999999765 68899865 589999999999987 45443 23
Q ss_pred hchhHHhhhcccchhhHHHHHHHHHHhccCCCC----------CCC--HHHHHHHHHHHHHhhcCCccchhhH-HHHHHH
Q 007426 135 CKPLSDSLLGSQESLTAGAALCLKALVDSDNWR----------FAS--DEMVNKVCQNVAGALEEKSTQTNSH-MGLVMA 201 (604)
Q Consensus 135 ~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr----------~Ap--~elv~rlc~Rv~kaL~~ks~qtkAh-l~LV~A 201 (604)
+-|+|=-|+.... +||- -.| +-+..+|.+-++.++++.+ |.++ .--|-.
T Consensus 219 LAP~ffkllttSs----------------NNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~--AmSLlYECvNT 280 (877)
T KOG1059|consen 219 LAPLFYKLLVTSS----------------NNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV--AMSLLYECVNT 280 (877)
T ss_pred ccHHHHHHHhccC----------------CCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHH
Confidence 4566665555432 3341 011 2345567777777777543 2211 111112
Q ss_pred HHHhhhhHHHHhH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccch
Q 007426 202 LAKHNALIVEAYA---RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYV 278 (604)
Q Consensus 202 Ls~~n~~iiea~g---~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~V 278 (604)
++.+ .+.+++ -..++-.++=|..-+..+|-..+--+--++..|++. ++..+..++.-||+.| .||=.-|
T Consensus 281 VVa~---s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa~kdlIlrcL----~DkD~SI 352 (877)
T KOG1059|consen 281 VVAV---SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQAHKDLILRCL----DDKDESI 352 (877)
T ss_pred heee---hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHHhHHHHHHHh----ccCCchh
Confidence 2222 112222 112222233233222378889999999999998854 4678888888888766 5776666
Q ss_pred hH
Q 007426 279 KG 280 (604)
Q Consensus 279 R~ 280 (604)
|-
T Consensus 353 Rl 354 (877)
T KOG1059|consen 353 RL 354 (877)
T ss_pred HH
Confidence 64
No 61
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.89 E-value=22 Score=31.49 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccC--------CCccchhHHHHHHHHHH
Q 007426 218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQS--------DQMAYVKGASLEALQTA 289 (604)
Q Consensus 218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRf--------DKVk~VR~am~eALq~w 289 (604)
++.+..=|. ..+|..-.-|...|..+++..+.+ +-.++.+=.-..|-.+| |.=..||+-|.+.+++|
T Consensus 39 ~~~l~kRl~----~~~~~~~lkaL~lLe~lvkN~g~~-f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRIN----NKNPHVVLKALTLLEYCVKNCGER-FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhc----CCcHHHHHHHHHHHHHHHHHccHH-HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 444444455 679999999999999999999865 44455443344454444 22357999999999999
Q ss_pred H
Q 007426 290 K 290 (604)
Q Consensus 290 K 290 (604)
+
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 7
No 62
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.19 E-value=1.1e+02 Score=32.17 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHhCCCC-cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchh
Q 007426 60 GEYTISLYEVLARVHGANI-VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPL 138 (604)
Q Consensus 60 Rke~I~Lle~LArvHG~~i-aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL 138 (604)
-+.++..+-..=..|-..+ ...-.+++..+++-|.|... ++|.+--..++.+-. . ....+....+..|.-+|
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~--~vR~~w~~~~~~~~~---~--~~~~~~~~~~~~~~~~L 108 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKP--PVRRAWLLCLGEALW---E--SPNSDSLKFAEPFLPKL 108 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHh---h--ccCchHHHHHHHHHHHH
Confidence 3344433333333343333 44458899999999999986 379888888887776 1 12223334445566666
Q ss_pred HHhhhc
Q 007426 139 SDSLLG 144 (604)
Q Consensus 139 ~EaL~~ 144 (604)
.+.+-+
T Consensus 109 ~~~~~~ 114 (339)
T PF12074_consen 109 LQSLKE 114 (339)
T ss_pred HHHHHH
Confidence 666643
No 63
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.11 E-value=31 Score=44.01 Aligned_cols=164 Identities=11% Similarity=0.182 Sum_probs=109.9
Q ss_pred CCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhc
Q 007426 57 SVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCK 136 (604)
Q Consensus 57 s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~K 136 (604)
..+|+.||..+-.|+-..|..|.||+|+.+=.+++.++.-.-++--=-+|.- |-++-.. -|.. -+-.+=-.
T Consensus 1145 ~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-------~~~e~ea-lDt~-R~s~akss 1215 (1702)
T KOG0915|consen 1145 NEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-------INIETEA-LDTL-RASAAKSS 1215 (1702)
T ss_pred HHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-------hhhHHHH-HHHH-HHhhhcCC
Confidence 3689999999999999999999999999999999987554422211113322 1110000 0000 00012234
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcC-Cccchh-hHHHHHHHHHHhhhhHHHHhH
Q 007426 137 PLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEE-KSTQTN-SHMGLVMALAKHNALIVEAYA 214 (604)
Q Consensus 137 PL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~-ks~qtk-Ahl~LV~ALs~~n~~iiea~g 214 (604)
|++|++. .|+- +-...++.+|-||+++++.+ .+..|| +--..|..|++--+.-..+|-
T Consensus 1216 pmmeTi~-----------~ci~---------~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s 1275 (1702)
T KOG0915|consen 1216 PMMETIN-----------KCIN---------YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS 1275 (1702)
T ss_pred cHHHHHH-----------HHHH---------hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch
Confidence 7777653 3442 34567889999999999985 777787 333445566676666667787
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 007426 215 RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDP 253 (604)
Q Consensus 215 ~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~ 253 (604)
.-|++..+.-+. .-+...||+=|-|...|++...+
T Consensus 1276 gKll~al~~g~~----dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1276 GKLLRALFPGAK----DRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred hHHHHHHhhccc----cccHHHHHHHHHHHHHHHhcCCh
Confidence 788888776666 57889999988888888876643
No 64
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.84 E-value=87 Score=39.75 Aligned_cols=271 Identities=17% Similarity=0.164 Sum_probs=156.9
Q ss_pred CChHHHHHHhhhcC-CchhHHHHHHHHHHHHhhcCCCChhHHHhhhc----cC-CCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 5 LSPILRQELANLDK-DADSRKSAMKALKSYVKDLDSKAIPLFLAQVS----ET-KENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 5 lsp~~rqeL~KLs~-DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~----dt-d~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
+.+-+++-+.||.| |.-|+-.|+.||...+.+.+.+.+-.||.|.. +. -+....||..+...+..|-..=++.|
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888874 78899999999999999998777555553222 11 33335699999999999999999999
Q ss_pred cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc------------
Q 007426 79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ------------ 146 (604)
Q Consensus 79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq------------ 146 (604)
+||+-.+|.-+.=---|.+.. |..|=.++.... +.++...+ +-.+|.|=+-.+..++
T Consensus 119 sp~LK~li~~wl~~~~d~~~~--vs~aa~~sf~~~--------f~~ek~~~-v~~~c~~~i~~~~~~~~~~~~~~slSd~ 187 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYP--VSEAAKASFKDG--------FAEEKDRH-VWFKCDPEIFYLVTEILVKETPDSLSDL 187 (1312)
T ss_pred hHHHHhhhhhhhheecccchH--HHHHHHHHHHhh--------cChhhhHH-HHHHhhHHHHHHHHHHHhccCccccchh
Confidence 999999998776555555532 222211111111 11222222 2233433222221111
Q ss_pred ------------chhhHHHHHHHHHHhccCCCCCCCHHHHHHHH---------HHHHHhhcCCc-cchhhHHHHHHHHHH
Q 007426 147 ------------ESLTAGAALCLKALVDSDNWRFASDEMVNKVC---------QNVAGALEEKS-TQTNSHMGLVMALAK 204 (604)
Q Consensus 147 ------------e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc---------~Rv~kaL~~ks-~qtkAhl~LV~ALs~ 204 (604)
.-+=+-+=+||.++..-. ++.+.+..+- ...-+.++.+. ....|.+.++-++.+
T Consensus 188 ~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~----~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 188 RTLSSEELESKYQRVISSSLLLLLKLFKIT----GDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred hhcchHHHHHhhHHHHHHHHHHHHHHHHHh----CchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 224456677888888542 4666666322 23666777665 444589999988888
Q ss_pred hhhhH-HHHhHHHHHHHHHHHhcCCCCCCC------HHHHH-HHHHHHHHHH--hhcCCCchhhhHHHHHHHHHhccCC-
Q 007426 205 HNALI-VEAYARLLIQSGLRILNAGPGEAN------SQKRL-LAIQMLNFLM--KSLDPRSIFSELELIIEGMENCQSD- 273 (604)
Q Consensus 205 ~n~~i-iea~g~~Ll~S~l~~L~~~~~ssD------Wq~RK-AAAeaL~~la--~~~d~~~L~se~~S~I~~LE~cRfD- 273 (604)
..+.. .+.....+-++.+.+++ +.| |-+-+ =-..-....+ .+..++.|.+...++|+-=+-+.+|
T Consensus 264 ~i~~~~~~~~~~~l~~~~~~~~~----~~d~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~irkn~~~~~~~ 339 (1312)
T KOG0803|consen 264 DILNRVMESEKNYLKPVLLGSID----SLDHVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIRKNGFFGSDQ 339 (1312)
T ss_pred hhHHhcchhhhhHhhHHHHcccc----ccccccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHhhccccccce
Confidence 87665 33333334455555555 444 53332 1111112222 1123456777777777631112222
Q ss_pred --------------Cccch---hHHHHHHHHHHHHhhh
Q 007426 274 --------------QMAYV---KGASLEALQTAKRIAA 294 (604)
Q Consensus 274 --------------KVk~V---R~am~eALq~wK~Ia~ 294 (604)
++--+ +++-.+-...|+..+-
T Consensus 340 ~~~P~~l~fl~~l~~~~~i~~~~~~F~dn~~~~~~~~~ 377 (1312)
T KOG0803|consen 340 VTLPSLLVFLAKLPKMSLIDLRKDAFLDNFLLELIAGE 377 (1312)
T ss_pred eecccHHHHHHHcCchhhhhHHHHHHHHhhHHHHHHHh
Confidence 22223 6777777777766543
No 65
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=11 Score=44.70 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhcCCccch-----hhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 007426 173 MVNKVCQNVAGALEEKSTQT-----NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFL 247 (604)
Q Consensus 173 lv~rlc~Rv~kaL~~ks~qt-----kAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~l 247 (604)
.++.|||-+..+|.....-. +-|+..-.- . .+..+.-|.-+++-.+.|+.+.+.+.||..|-||+-++.++
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C-L---~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSI 391 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC-L---MLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSI 391 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH-H---HHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhh
Confidence 45578999888887521111 112211100 0 11223344556788889998888899999999999999999
Q ss_pred HhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 248 MKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 248 a~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
|..-+++.|.......+..+++-=.||.=.||+++-.++
T Consensus 392 l~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 392 LEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred hcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 987777777766555666666666699999999886665
No 66
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.52 E-value=5.1 Score=35.49 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=55.7
Q ss_pred HHHHHHhhhcCCch--hHHHHHHHHHHHHhhcC-C-----CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426 8 ILRQELANLDKDAD--SRKSAMKALKSYVKDLD-S-----KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV 79 (604)
Q Consensus 8 ~~rqeL~KLs~DRD--T~~iA~~eLesiak~Ld-~-----dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia 79 (604)
.+++.+..|. |+. .|.-|+..|.+.+++-+ + ..+..||..|.|. +|++==.||+.|+.||..|++.+.
T Consensus 4 ~~~~al~~L~-dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLN-DPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHcc-CCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChHHHH
Confidence 4567778887 766 67789999999999776 1 2255666666644 678999999999999999998776
Q ss_pred ccHHH
Q 007426 80 PQIDS 84 (604)
Q Consensus 80 PhL~K 84 (604)
|.|-+
T Consensus 80 ~~L~~ 84 (92)
T PF10363_consen 80 PILLD 84 (92)
T ss_pred HHHHH
Confidence 66543
No 67
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.05 E-value=1.7e+02 Score=34.46 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=114.9
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhhcC----CCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHh--CCCCccc
Q 007426 10 RQELANLDKDADSRKSAMKALKSYVKDLD----SKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVH--GANIVPQ 81 (604)
Q Consensus 10 rqeL~KLs~DRDT~~iA~~eLesiak~Ld----~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvH--G~~iaPh 81 (604)
|..=.||- +.|+.|+-|||++|++|- .+-|-.+++.++.. .++.+.-||- -|++.+|..| |...++|
T Consensus 7 r~ltdKlY---ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkG--gLiGlAA~~iaLg~~~~~Y 81 (675)
T KOG0212|consen 7 RGLTDKLY---EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKG--GLIGLAAVAIALGIKDAGY 81 (675)
T ss_pred hhhhhHHH---HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccc--hHHHHHHHHHHhccccHHH
Confidence 33344565 789999999999999993 44488888877754 3344455774 4566666655 6788999
Q ss_pred HHHHHHHHHhhccCCCCChhhH-HHHHHHH--HHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHH--
Q 007426 82 IDSIMTTITKTLASSAGSFPLQ-QACSRVV--PAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALC-- 156 (604)
Q Consensus 82 L~KImstIVRRLsDsdSS~~vR-~AC~kvv--~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALC-- 156 (604)
+.+|+--|+--++|+|+- || -||-... +-.++--+-+-+ ..||..+||=- +.....|+.||-|=
T Consensus 82 ~~~iv~Pv~~cf~D~d~~--vRyyACEsLYNiaKv~k~~v~~~F-----n~iFdvL~kls----aDsd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQ--VRYYACESLYNIAKVAKGEVLVYF-----NEIFDVLCKLS----ADSDQNVRGGAELLDR 150 (675)
T ss_pred HHHhhHHHHHhccCccce--eeeHhHHHHHHHHHHhccCcccch-----HHHHHHHHHHh----cCCccccccHHHHHHH
Confidence 999999999999999974 46 4885432 222211111111 34555555522 22334567776652
Q ss_pred -HHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcC
Q 007426 157 -LKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNA 227 (604)
Q Consensus 157 -LAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~ 227 (604)
++..|-.....|-=++.+.=+--|+ ...+-.|. +.+..+.-|-.+.+.-.--|...++......|++
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eri----y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERI----YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC
Confidence 2222222211122222222222222 22232332 4555555555555665566777888888888884
No 68
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=41 Score=40.96 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=97.3
Q ss_pred CCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC
Q 007426 4 CLSPILRQELANLDKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG 75 (604)
Q Consensus 4 ~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG 75 (604)
.+.|.+-+.|+-=. ..|-.-.|.+.|--+-+-| +.++||.|+..|..- +.--+-++||.-||.++|.||
T Consensus 211 slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I--eyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI--EYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhcc
Confidence 45666666666555 6788888999988777766 567999999998732 233578999999999999999
Q ss_pred CCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhHHHH
Q 007426 76 ANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTAGAA 154 (604)
Q Consensus 76 ~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQsGAA 154 (604)
..|.- -+.||+.+.- | |== |+ .|=+.+++..|-++..- .+ |+-..++- .=||.--|+..+ +.+---++
T Consensus 288 ~AiL~-AG~l~a~Lsy-l-DFF-Si---~aQR~AlaiaaN~Cksi-~s-d~f~~v~e--alPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 288 KAILQ-AGALSAVLSY-L-DFF-SI---HAQRVALAIAANCCKSI-RS-DEFHFVME--ALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHh-cccHHHHHHH-H-HHH-HH---HHHHHHHHHHHHHHhcC-CC-ccchHHHH--HHHHHHHHHhhccchhHHHHH
Confidence 87642 2333333221 1 111 11 13334454445444321 11 22222322 236666666666 34556689
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHH
Q 007426 155 LCLKALVDSDNWRFASDEMVNKVCQ 179 (604)
Q Consensus 155 LCLAAlVEs~nwr~Ap~elv~rlc~ 179 (604)
+|+++.||+.. ..++++++||.
T Consensus 357 ic~~ri~d~f~---h~~~kLdql~s 378 (1051)
T KOG0168|consen 357 ICLTRIADGFQ---HGPDKLDQLCS 378 (1051)
T ss_pred HHHHHHHHhcc---cChHHHHHHhc
Confidence 99999999743 23456666553
No 69
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=70.00 E-value=82 Score=32.29 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHhh
Q 007426 38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLA-SSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLs-DsdSS~~vR~AC~kvv~ALAry 116 (604)
+...+|.+...+.|.+. .+|..++.-++. .= .+.-+-.+++.|. |.+. .||.+|..+.+.+---
T Consensus 72 ~~~av~~l~~~l~d~~~---~vr~~a~~aLg~-------~~---~~~a~~~li~~l~~d~~~--~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 72 SEEAVPLLRELLSDEDP---RVRDAAADALGE-------LG---DPEAVPPLVELLENDENE--GVRAAAARALGKLGDE 136 (335)
T ss_pred hHHHHHHHHHHhcCCCH---HHHHHHHHHHHc-------cC---ChhHHHHHHHHHHcCCcH--hHHHHHHHHHHhcCch
Confidence 45568888888776554 578888772222 11 2333444555554 6664 4799998888776511
Q ss_pred cCCCCCccccchhhHHhhhchhHHhhhcccchh
Q 007426 117 GIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESL 149 (604)
Q Consensus 117 ~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~v 149 (604)
..+.||++.|......+
T Consensus 137 ----------------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 137 ----------------RALDPLLEALQDEDSGS 153 (335)
T ss_pred ----------------hhhHHHHHHhccchhhh
Confidence 13788999988877655
No 70
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.89 E-value=3.6 Score=31.55 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.8
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHH
Q 007426 83 DSIMTTITKTLASSAGSFPLQQACSRVV 110 (604)
Q Consensus 83 ~KImstIVRRLsDsdSS~~vR~AC~kvv 110 (604)
+.|+..|.+||.|+..+ ||+|+++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~--VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPS--VREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChH--HHHHHHHHC
Confidence 48999999999999864 699998753
No 71
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=69.60 E-value=1.7e+02 Score=31.62 Aligned_cols=207 Identities=14% Similarity=0.148 Sum_probs=120.3
Q ss_pred CCChhHHHhhhccCCC--CCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426 39 SKAIPLFLAQVSETKE--NGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 39 ~dtlP~FLscV~dtd~--~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry 116 (604)
.+-+-..++.|.+-++ ++..+--|.|.+|..|..-++..++.|+..=+-.++..|-++.. .+|..+ -+++..+..
T Consensus 128 ~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k--~ir~~a-~~l~~~~~~ 204 (372)
T PF12231_consen 128 SDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK--DIRTKA-ISLLLEAKK 204 (372)
T ss_pred hhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHH-HHHHHHHHH
Confidence 3334456666665554 22356778888888888888888888888888888888876664 357763 344444433
Q ss_pred cCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCC-ccchhhH
Q 007426 117 GIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEK-STQTNSH 195 (604)
Q Consensus 117 ~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~k-s~qtkAh 195 (604)
+.+| ++.++.- +....+.. ..+.-+++.+|.|+.+++.++ ......+
T Consensus 205 ~l~~-------------------------~~~~s~~----~~~~~~~~---~~~~~~~~~~~~~L~~mi~~~~~~~~a~~ 252 (372)
T PF12231_consen 205 CLGP-------------------------NKELSKS----VLEDLQRS---LENGKLIQLYCERLKEMIKSKDEYKLAMQ 252 (372)
T ss_pred HhCh-------------------------hHHHHHH----HHHHhccc---cccccHHHHHHHHHHHHHhCcCCcchHHH
Confidence 3321 1111110 11111111 112256778999999999984 3333322
Q ss_pred HHHHH-HHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH------HHHHHHHH
Q 007426 196 MGLVM-ALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL------ELIIEGME 268 (604)
Q Consensus 196 l~LV~-ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~------~S~I~~LE 268 (604)
+=.+. .|..-...---.+....|.-...|+. ++|-++|++|..+=..|.-.++.+.....+ ..+...++
T Consensus 253 iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn----~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~ 328 (372)
T PF12231_consen 253 IWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN----SSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLR 328 (372)
T ss_pred HHHHHHHHhCCchhhccHhHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhC
Confidence 22222 11111111222344445566666777 899999999999988887666554444332 33456778
Q ss_pred hccCCCcc-chhHHHHH
Q 007426 269 NCQSDQMA-YVKGASLE 284 (604)
Q Consensus 269 ~cRfDKVk-~VR~am~e 284 (604)
....+|++ .||+.+.-
T Consensus 329 ~~~~~~~~~~~~~~ll~ 345 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLY 345 (372)
T ss_pred ccccccccHHHHHHHHH
Confidence 88888888 66666554
No 72
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.06 E-value=27 Score=37.34 Aligned_cols=84 Identities=23% Similarity=0.171 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCC------CCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426 194 SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGP------GEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM 267 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~------~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L 267 (604)
..|.++.||..=..+-++.|.-.|+++++.||-.-- ..+.|+.|.-||+.|..|....+. .-..-...++..|
T Consensus 236 ~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~-~y~~l~~ri~~tl 314 (343)
T cd08050 236 YLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFST-SYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHH
Confidence 578888898888888999999999999999983311 247799999999999999866642 2222234455444
Q ss_pred HhccCCCccch
Q 007426 268 ENCQSDQMAYV 278 (604)
Q Consensus 268 E~cRfDKVk~V 278 (604)
=+-=+|..+++
T Consensus 315 ~k~l~d~~~~~ 325 (343)
T cd08050 315 LKALLDPKKPL 325 (343)
T ss_pred HHHHcCCCCCc
Confidence 44445655554
No 73
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.81 E-value=42 Score=36.61 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 007426 175 NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDP 253 (604)
Q Consensus 175 ~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~ 253 (604)
+..+..+.+.|.++...-| -=|..+.-|+..-+.++..-...++-..+..|. +-.++.=+||..++.-|...++
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK----NlRS~VsraA~~t~~difs~ln- 161 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK----NLRSAVSRAACMTLADIFSSLN- 161 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555666665554444 345566666666555555554444444455454 8899999999999999999997
Q ss_pred CchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 254 RSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 254 ~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
+.|..+..-|+..|=..-.+-=.+||+.+..||.+
T Consensus 162 ~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~a 196 (334)
T KOG2933|consen 162 NSIDQELDDLVTQLLHKASQDNRFVREDAEKALVA 196 (334)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 56777889999998888877779999999999986
No 74
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=67.93 E-value=8.9 Score=38.33 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=55.5
Q ss_pred HhhcCCC-ChhHHHhhhccCCCCCCC-chhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 007426 34 VKDLDSK-AIPLFLAQVSETKENGSV-SGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVP 111 (604)
Q Consensus 34 ak~Ld~d-tlP~FLscV~dtd~~~s~-vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ 111 (604)
.++||-+ -||.|..=+.|++.|-.. .++-+.-|++. -.|+.|.|.||++|.-|-+-|...+.. |..+|-+++-
T Consensus 31 ~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~---~~~~kilPvlPqLI~plk~AL~tr~~~--V~~~~L~~Lq 105 (183)
T PF10274_consen 31 PEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLER---GGGEKILPVLPQLIIPLKRALNTRDPE--VFCATLKALQ 105 (183)
T ss_pred hhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 4566644 499999999999987542 23333333332 367789999999999999999766643 5788888888
Q ss_pred HHH
Q 007426 112 AIA 114 (604)
Q Consensus 112 ALA 114 (604)
.|.
T Consensus 106 ~Lv 108 (183)
T PF10274_consen 106 QLV 108 (183)
T ss_pred HHH
Confidence 885
No 75
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.92 E-value=87 Score=38.06 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCChHHHH----HHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 3 RCLSPILRQ----ELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 3 r~lsp~~rq----eL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
+-+||.||+ ++-||- +-|-.+-+ +|+-+++.|=+|.=|.-+.| ++--|+.+|--|=++|
T Consensus 153 ~D~s~yVRk~AA~AIpKLY-sLd~e~k~--qL~e~I~~LLaD~splVvgs--------------Av~AF~evCPerldLI 215 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLY-SLDPEQKD--QLEEVIKKLLADRSPLVVGS--------------AVMAFEEVCPERLDLI 215 (968)
T ss_pred cCCcHHHHHHHHHhhHHHh-cCChhhHH--HHHHHHHHHhcCCCCcchhH--------------HHHHHHHhchhHHHHh
Q ss_pred cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhH-------------------
Q 007426 79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLS------------------- 139 (604)
Q Consensus 79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~------------------- 139 (604)
-+|.-| +-|-|.|-+. =+=+-.+..|-||++ +-|.+|-.
T Consensus 216 Hknyrk----lC~ll~dvde-----WgQvvlI~mL~RYAR-------------~~l~~P~~~~~~~e~n~~~~~~~~~~~ 273 (968)
T KOG1060|consen 216 HKNYRK----LCRLLPDVDE-----WGQVVLINMLTRYAR-------------HQLPDPTVVDSSLEDNGRSCNLKDKYN 273 (968)
T ss_pred hHHHHH----HHhhccchhh-----hhHHHHHHHHHHHHH-------------hcCCCccccccccccCccccccccccc
Q ss_pred ------------Hhhhcccchh-hHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhh
Q 007426 140 ------------DSLLGSQESL-TAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHN 206 (604)
Q Consensus 140 ------------EaL~~qqe~v-QsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n 206 (604)
.-|..+-+++ |+--+.-+-|+... -|.-||..-+.++..-+..+|.++..---..|.-|..++...
T Consensus 274 ~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql-~y~lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 274 EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL-FYHLAPKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKR 352 (968)
T ss_pred ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhH-HHhhCCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcc
Q ss_pred hhHHHHhHH--------------------------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH
Q 007426 207 ALIVEAYAR--------------------------LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL 260 (604)
Q Consensus 207 ~~iiea~g~--------------------------~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~ 260 (604)
+...++|.- +=+..+++-|+.-+++.|-.-=-+|.++|..-| ..+.+-.
T Consensus 353 ~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA-----~~~~sv~ 427 (968)
T KOG1060|consen 353 PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA-----SRIGSVT 427 (968)
T ss_pred hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-----HhhCchh
Q ss_pred HHHHHHH
Q 007426 261 ELIIEGM 267 (604)
Q Consensus 261 ~S~I~~L 267 (604)
..|+.-|
T Consensus 428 ~tCL~gL 434 (968)
T KOG1060|consen 428 DTCLNGL 434 (968)
T ss_pred hHHHHHH
No 76
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=66.79 E-value=1.6e+02 Score=30.22 Aligned_cols=164 Identities=13% Similarity=0.175 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHH--------hCCCCcccHHHHHHHHHhhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccch
Q 007426 60 GEYTISLYEVLARV--------HGANIVPQIDSIMTTITKTL---ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKR 128 (604)
Q Consensus 60 Rke~I~Lle~LArv--------HG~~iaPhL~KImstIVRRL---sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~ 128 (604)
=||+=.||+++++. .+..-..++.+|...++.-| +=.+ .| .++.....++.+++-... ..+-.
T Consensus 64 iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrG-Af---e~~~~~f~~lc~~l~~~~--~~~l~ 137 (255)
T PF10350_consen 64 IKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRG-AF---ESVYPGFTALCRRLWSSN--NPELS 137 (255)
T ss_pred HHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccccc-HH---HHHHHHHHHHHHHHhcCC--CchHH
Confidence 47777899999853 34445667788877777777 4343 33 567777777776555211 11122
Q ss_pred hhHHhhhchhHHhhhcc-cc--hh---hHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccc--------hhh
Q 007426 129 HIIHSLCKPLSDSLLGS-QE--SL---TAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ--------TNS 194 (604)
Q Consensus 129 ~ii~sl~KPL~EaL~~q-qe--~v---QsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q--------tkA 194 (604)
..-...++=+++.+..+ +. ++ ++|-..++.+++-++.-. .+ .++++.-.++...-+.+... ...
T Consensus 138 ~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~-~~-~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qV 215 (255)
T PF10350_consen 138 ELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSN-SR-PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQV 215 (255)
T ss_pred HhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCc-ch-hHHHHHHHHHHHHhcCCcccccccccchHHH
Confidence 23344556666667666 32 24 899999999999996521 11 77888777777777776553 223
Q ss_pred H-HHHHHHHHHhh--hhHHHHhHHHHHHHHHHHhcCCCCCCCHH
Q 007426 195 H-MGLVMALAKHN--ALIVEAYARLLIQSGLRILNAGPGEANSQ 235 (604)
Q Consensus 195 h-l~LV~ALs~~n--~~iiea~g~~Ll~S~l~~L~~~~~ssDWq 235 (604)
| |+.+.+|..-. +..+.+|....+.-+++.+. +.+|+
T Consensus 216 HAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~----s~~Wa 255 (255)
T PF10350_consen 216 HALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS----SPDWA 255 (255)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC----CccCC
Confidence 3 55666655433 33456787777888888887 78885
No 77
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.78 E-value=1.6e+02 Score=30.60 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=111.3
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHH--hhcCCCChhHHHhhhccCCCCCC---CchhhHHHHHHHHHHHhCCCCcccHH
Q 007426 9 LRQELANLDKDADSRKSAMKALKSYV--KDLDSKAIPLFLAQVSETKENGS---VSGEYTISLYEVLARVHGANIVPQID 83 (604)
Q Consensus 9 ~rqeL~KLs~DRDT~~iA~~eLesia--k~Ld~dtlP~FLscV~dtd~~~s---~vRke~I~Lle~LArvHG~~iaPhL~ 83 (604)
+.=-++||+ |..+-..|++.|..++ +..+.+....++..|.+.-...+ ..|..+..|+..|-.-|...+...=+
T Consensus 44 ~~F~~~rl~-D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~ 122 (262)
T PF14500_consen 44 LDFFCSRLD-DHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGD 122 (262)
T ss_pred HHHHHHHhc-cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh
Confidence 334467998 9999999999999999 44566778888888886533332 67999999999999999877744445
Q ss_pred HHHHHHHhhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc---------ccc----
Q 007426 84 SIMTTITKTL---ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG---------SQE---- 147 (604)
Q Consensus 84 KImstIVRRL---sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~---------qqe---- 147 (604)
..|..++.-+ +|| -|.-.+=.|.+.+..- +. +..+..-|||++.- .++
T Consensus 123 ~fv~~~i~~~~gEkDP--------RnLl~~F~l~~~i~~~-~~-------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~I 186 (262)
T PF14500_consen 123 DFVYGFIQLIDGEKDP--------RNLLLSFKLLKVILQE-FD-------ISEFAEDLFDVFSCYFPITFRPPPNDPYGI 186 (262)
T ss_pred HHHHHHHHHhccCCCH--------HHHHHHHHHHHHHHHh-cc-------cchhHHHHHHHhhheeeeeeeCCCCCCCCC
Confidence 5666666654 555 3444444444332210 00 24456666666642 122
Q ss_pred ---hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHH
Q 007426 148 ---SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSG 221 (604)
Q Consensus 148 ---~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~ 221 (604)
-+..+---||+ + .+....-..|-+..-|.+.+..+| ++-.|.-.+...++..+..|...+..+.
T Consensus 187 T~edLk~~L~~cl~----s------~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 187 TREDLKRALRNCLS----S------TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred CHHHHHHHHHHHhc----C------cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 22333333433 2 222223345556666666666666 5666665555555555566655554443
No 78
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=66.57 E-value=19 Score=31.69 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=52.0
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
..|+++-+|++.+++-||..---.-++|+-+..|.|-|+..++..+=+....+.+|...+
T Consensus 21 ~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 21 ALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999886666779999999999999999888888888887776543
No 79
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.37 E-value=27 Score=42.48 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCccchh-hHHHHH-HHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 174 VNKVCQNVAGALEEKSTQTN-SHMGLV-MALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 174 v~rlc~Rv~kaL~~ks~qtk-Ahl~LV-~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
.+.+.|-+..+|.=+..--+ .-+..+ +.|-++..++ .-|...+++..+-+=.+ -++..=..|..|.|-|+.|...+
T Consensus 907 ~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 907 FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-TEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-hHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccC
Confidence 45688888888886555443 222222 2333444444 66777888886654432 11111578999999999999877
Q ss_pred CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426 252 DPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIA 293 (604)
Q Consensus 252 d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia 293 (604)
-.+.|-+|...+|++|+.|=.||=..||.-+.++=|.|-+|.
T Consensus 985 P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 985 PTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred CCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 778899999999999999999999999999999999999883
No 80
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.68 E-value=9.7 Score=41.26 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=82.7
Q ss_pred HHHHHHhhhcCCchhHHHHHHH-HHHHHhhcCCCChhHH---Hhhhcc---CCCCC-CCchhhHHHHHHHHHHHh-----
Q 007426 8 ILRQELANLDKDADSRKSAMKA-LKSYVKDLDSKAIPLF---LAQVSE---TKENG-SVSGEYTISLYEVLARVH----- 74 (604)
Q Consensus 8 ~~rqeL~KLs~DRDT~~iA~~e-Lesiak~Ld~dtlP~F---LscV~d---td~~~-s~vRke~I~Lle~LArvH----- 74 (604)
.+|.+++- + |-+|++.|+-+ |+..++.-.....+.| +..+.. ++... .-.+.-+|+|++.||...
T Consensus 214 YIrrd~e~-s-d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 214 YIRRDLEG-S-DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHSCS-S----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHhhccc-c-ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 36788875 5 88999886655 4566666555445554 444433 12222 235778999999998643
Q ss_pred CCC----CcccHHHHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchh
Q 007426 75 GAN----IVPQIDSIMTTITKTLA-SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESL 149 (604)
Q Consensus 75 G~~----iaPhL~KImstIVRRLs-DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~v 149 (604)
|.. +++-.+=...+|+--|. +......++..|-|.+..-...+. .+.+..+...|...|..++-.|
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---------~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---------KEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----------HHHHHHHHHHHHHHTTSS-HHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---------HHHHHHHHHHHHHHhCCCCcch
Confidence 432 33333333334444455 344333377777788877765542 3466789999999999999999
Q ss_pred hHHHHHHH
Q 007426 150 TAGAALCL 157 (604)
Q Consensus 150 QsGAALCL 157 (604)
-.=||.|+
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99999886
No 81
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.67 E-value=2e+02 Score=34.91 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=119.4
Q ss_pred CCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHH---HHHHHHHHHHhhcCCCCCccccchhhHHh
Q 007426 57 SVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQ---ACSRVVPAIARYGIDPTTPEDKKRHIIHS 133 (604)
Q Consensus 57 s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~---AC~kvv~ALAry~idp~~~~~~~~~ii~s 133 (604)
..|=--+|-|.+.|||.-+..|.|+-.-||..++.-|+++.= .|+ +=--+.|.+|.-+- ..
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~---hR~vKP~IlS~FgDIAlaIg-------------~~ 716 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL---HRNVKPAILSVFGDIALAIG-------------AD 716 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc---cccccchHHHHHHHHHHHHH-------------Hh
Confidence 345556788999999999999999999999999999998862 232 44444555553221 11
Q ss_pred hhchhHHhhhcccchhhHHHHHHHHH-HhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhh-hhHHH
Q 007426 134 LCKPLSDSLLGSQESLTAGAALCLKA-LVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHN-ALIVE 211 (604)
Q Consensus 134 l~KPL~EaL~~qqe~vQsGAALCLAA-lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n-~~iie 211 (604)
|- |-.+ .=-.||-+| .++.++-.+--.+.+++|-..+..+-.. .+-+|-.++ ...+.
T Consensus 717 F~-~Yl~----------~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~g----------i~qglk~~~~~~~~~ 775 (859)
T KOG1241|consen 717 FE-PYLE----------MVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTG----------IIQGLKTHADVMLVQ 775 (859)
T ss_pred HH-HHHH----------HHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHH----------HHHHhhcccchhhhh
Confidence 21 2222 222333333 3455442233445666665544333221 111111111 12334
Q ss_pred HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 212 AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 212 a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
+|...+++=+..|=.+. .-+=.+-++|+=.|.-|+...+++.+..+. ..+.+-|-.+|-=|..--|+.+.-|.+.-
T Consensus 776 p~v~~I~sfi~~I~~e~--~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~i 853 (859)
T KOG1241|consen 776 PYVPHIISFIDRIAAEP--DVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEI 853 (859)
T ss_pred cchHHHHHHHHHHhcCc--ccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 55544444444444421 112356778888999999999877777665 56888888888777778889999999888
Q ss_pred HHhh
Q 007426 290 KRIA 293 (604)
Q Consensus 290 K~Ia 293 (604)
|+..
T Consensus 854 kr~~ 857 (859)
T KOG1241|consen 854 KRQI 857 (859)
T ss_pred HHHh
Confidence 8764
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=62.01 E-value=1.6e+02 Score=35.68 Aligned_cols=187 Identities=15% Similarity=0.114 Sum_probs=112.0
Q ss_pred hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC-CCCcccHHHHHHHHHhhccCCCCChh-hHHHHHHHHHHHHhhcCC
Q 007426 42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG-ANIVPQIDSIMTTITKTLASSAGSFP-LQQACSRVVPAIARYGID 119 (604)
Q Consensus 42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG-~~iaPhL~KImstIVRRLsDsdSS~~-vR~AC~kvv~ALAry~id 119 (604)
-|.|.-.+.+.+.. -|+|++.=+-....--+ ...-++...+---+-.++.|+.=.++ +-..|...++..-|-.
T Consensus 255 ~~~l~t~~~s~~WK---~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-- 329 (815)
T KOG1820|consen 255 TKNLETEMLSKKWK---DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-- 329 (815)
T ss_pred ChHHHHhhhccchH---HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--
Confidence 34566666665553 58888765544444444 44555555555555556688874332 1123333333222211
Q ss_pred CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhh--HHH
Q 007426 120 PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNS--HMG 197 (604)
Q Consensus 120 p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkA--hl~ 197 (604)
-........-+|+|.|++....+=--+=-|+-+...+.+ +.++..-|.-+|++++-|.+. .+-
T Consensus 330 -------~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 330 -------FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred -------hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 122334567789999999887664444445555666432 567888899999999888884 333
Q ss_pred HHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426 198 LVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD 252 (604)
Q Consensus 198 LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d 252 (604)
+-..+.+.++.+++.+.- .+++..+.... ..|-..|+||.+++..||.+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHhh
Confidence 444444555455443332 24555555444 5788999999999999997765
No 83
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.44 E-value=2.5e+02 Score=34.69 Aligned_cols=217 Identities=16% Similarity=0.191 Sum_probs=119.3
Q ss_pred HHHhhhccCCCCCCCchhhHHHHHHHHHH--HhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH-hhcCCC
Q 007426 44 LFLAQVSETKENGSVSGEYTISLYEVLAR--VHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIA-RYGIDP 120 (604)
Q Consensus 44 ~FLscV~dtd~~~s~vRke~I~Lle~LAr--vHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA-ry~idp 120 (604)
+|=-.+.+..++..|.|-++|.-+.-|.+ -|-..+. .-|++.-..-.|+|-|| + |.--|.+.+..|. .| |
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~--~ekvl~i~ld~Lkdeds-y-vyLnaI~gv~~Lcevy---~ 800 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ--GEKVLAIALDTLKDEDS-Y-VYLNAIRGVVSLCEVY---P 800 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh--HHHHHHHHHHHhcccCc-e-eeHHHHHHHHHHHHhc---c
Confidence 34444555566678899999999999999 6655554 45888888899999996 4 4678888888887 44 1
Q ss_pred CCccccchhhHHhhhchhHHhhhccc-----ch-hhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH----HHhhcCCcc
Q 007426 121 TTPEDKKRHIIHSLCKPLSDSLLGSQ-----ES-LTAGAALCLKALVDSDNWRFASDEMVNKVCQNV----AGALEEKST 190 (604)
Q Consensus 121 ~~~~~~~~~ii~sl~KPL~EaL~~qq-----e~-vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv----~kaL~~ks~ 190 (604)
. . +..=|.|--.++. +. +-.|=| +-+.+++ -+|++.+---++ .+-..+|-.
T Consensus 801 e-------~----il~dL~e~Y~s~k~k~~~d~~lkVGEa--i~k~~qa------~Gel~~~y~~~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 801 E-------D----ILPDLSEEYLSEKKKLQTDYRLKVGEA--ILKVAQA------LGELVFKYKAVLINTFLSGVREPDH 861 (982)
T ss_pred h-------h----hHHHHHHHHHhcccCCCccceehHHHH--HHHHHHH------hccHHHHHHHHHHHHHHHhcCCchH
Confidence 1 1 2222333111111 11 345533 3344553 344444311111 111223322
Q ss_pred chh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhh-------HHH
Q 007426 191 QTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSE-------LEL 262 (604)
Q Consensus 191 qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se-------~~S 262 (604)
..+ +-|+..|=|-+.++. ..+.++..+..-++......+.-..|-||+..|..++-+.+.+.+.-+ ...
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~---~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~t 938 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAF---QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDET 938 (982)
T ss_pred HHHHhHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 112 223333333344332 223344555555555444467779999999999999988876655533 244
Q ss_pred HHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 263 IIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 263 ~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
|...+-..+.|-+|.----..+.+|++
T Consensus 939 l~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 939 LLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 555555555554444333334444443
No 84
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=60.12 E-value=2.4e+02 Score=34.08 Aligned_cols=255 Identities=15% Similarity=0.138 Sum_probs=156.6
Q ss_pred hHHHHHHhhhcCCchh--HHHHHHHHHHHHhhcCCCCh-hHHHhhhccCCCCC-CCchhhHHHHHHHHHHHhCCCCcccH
Q 007426 7 PILRQELANLDKDADS--RKSAMKALKSYVKDLDSKAI-PLFLAQVSETKENG-SVSGEYTISLYEVLARVHGANIVPQI 82 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT--~~iA~~eLesiak~Ld~dtl-P~FLscV~dtd~~~-s~vRke~I~Lle~LArvHG~~iaPhL 82 (604)
-.+-..|.+|+.+.+| |+-+++.|...+..+....+ -.|..-+..-..-+ ..+|-.+= +..+...+...-+-+
T Consensus 158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sac---glf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSAC---GLFGKLYVSLPDDAV 234 (759)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhh---hhhHHhccCCChHHH
Confidence 3456778899999999 88999999999998876554 33333322111101 01111111 112222233333445
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc-cchhhHHHHHHHHHHh
Q 007426 83 DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS-QESLTAGAALCLKALV 161 (604)
Q Consensus 83 ~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q-qe~vQsGAALCLAAlV 161 (604)
-+=.-.+.++|..-+.. -||.+=++=.+.+|.++.. ++..+.+.|.+..|.-. +++|..-|-=++..+-
T Consensus 235 k~elr~~~~~lc~d~~~-~Vr~~~a~~l~~~a~~~~~---------~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTP-MVRRAVASNLGNIAKVLES---------EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL 304 (759)
T ss_pred HHHHHHHHHhhccccch-hhHHHHHhhhHHHHHHHHH---------HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH
Confidence 55556667777555543 3788888888889988752 45567777877777654 4677655444444444
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
+--+ .+++..+.+++-...+.++++-+-.-+.+-... .+....-+..+. .++..-...++ ..-|--|-|+
T Consensus 305 ~l~~---~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~--~L~~~~~~~~~~~~~~~~~~~l~~----~~~~e~r~a~ 375 (759)
T KOG0211|consen 305 DLLD---DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFS--ELSSAVGPSATRTQLVPPVSNLLK----DEEWEVRYAI 375 (759)
T ss_pred HhcC---CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhh--hHHHHhccccCcccchhhHHHHhc----chhhhhhHHh
Confidence 4321 233889999999999999997666544443322 222222121222 24555556666 6899999999
Q ss_pred HHHHHHHHhhcCCCc-hhhhHHHHHHHHHhccCCCccchhHHHH
Q 007426 241 IQMLNFLMKSLDPRS-IFSELELIIEGMENCQSDQMAYVKGASL 283 (604)
Q Consensus 241 AeaL~~la~~~d~~~-L~se~~S~I~~LE~cRfDKVk~VR~am~ 283 (604)
|.=...+...++-.. +..-.+++|-.+..+=-|...+||.+..
T Consensus 376 a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 376 AKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred hcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 999999887665111 2223456678888888899999998653
No 85
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=59.79 E-value=23 Score=35.46 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=86.6
Q ss_pred CCCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhc-------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHH-HHh
Q 007426 3 RCLSPILRQELANLDKDADSRKSAMKALKSYVKDL-------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLA-RVH 74 (604)
Q Consensus 3 r~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~L-------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LA-rvH 74 (604)
|.+.|++--+|..=. |....++=|..+|-.+ .-++-+-...||..-..+. -..++++|-.|. .+.
T Consensus 2 ~eikplLIsCL~~q~----~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e---~~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 2 REIKPLLISCLTMQE----TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENE---PVKAFHIFICLPMPLY 74 (174)
T ss_pred cchHHHHHHHHHhhc----ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccc---hHHHHHHHHhCCchhh
Confidence 456677777776544 5556677777777654 3445566677777543322 267899999999 999
Q ss_pred CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH--hhcCCCCCccccchhhHHhhhchhHHhhhcccc
Q 007426 75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIA--RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE 147 (604)
Q Consensus 75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA--ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe 147 (604)
|.-|.|+|.++..-|.++|-+|.. +.+.+=|-...++.. -.+.+-...-+--..++...++-+-|.+-..+|
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~-~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEE-VDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGME 148 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchh-ccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 999999999999999999988864 334544444444433 334443343333344445444444444444443
No 86
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=58.74 E-value=19 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
||-.+++-|.|++- .||.+++.+++.|+.++
T Consensus 1 llp~l~~~l~D~~~--~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSP--EVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSH--HHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCH--HHHHHHHHHHHHHHhhC
Confidence 45667788888874 58999999999998763
No 87
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=57.06 E-value=11 Score=32.94 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcCCCChhHHHhhhccCCC-CCCCchhhHHHHHHHHHHHhCCCCccc---HHHHHHHHHhhccCCCCCh
Q 007426 25 SAMKALKSYVKDLDSKAIPLFLAQVSETKE-NGSVSGEYTISLYEVLARVHGANIVPQ---IDSIMTTITKTLASSAGSF 100 (604)
Q Consensus 25 iA~~eLesiak~Ld~dtlP~FLscV~dtd~-~~s~vRke~I~Lle~LArvHG~~iaPh---L~KImstIVRRLsDsdSS~ 100 (604)
+..++++..++.|+..-++.||.-|.+--. ..++.-+.+++-+..+...||..|... +-.++..+-|.|...-.
T Consensus 13 ~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~-- 90 (110)
T PF04003_consen 13 IPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQ-- 90 (110)
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--
Confidence 347899999999999999999999997322 234567889999999999999886655 77777777777654332
Q ss_pred hhHHHHHHHHHHH
Q 007426 101 PLQQACSRVVPAI 113 (604)
Q Consensus 101 ~vR~AC~kvv~AL 113 (604)
.+++-|..-.+.|
T Consensus 91 ~l~~l~~~n~~~L 103 (110)
T PF04003_consen 91 NLSKLLDLNLGRL 103 (110)
T ss_pred HHHHHHHHhHHHH
Confidence 1455555555544
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=3.7e+02 Score=33.95 Aligned_cols=254 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhcCCchhHHHHHHHHHHHHhhcCCCC-----------------hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC-
Q 007426 15 NLDKDADSRKSAMKALKSYVKDLDSKA-----------------IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA- 76 (604)
Q Consensus 15 KLs~DRDT~~iA~~eLesiak~Ld~dt-----------------lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~- 76 (604)
.|++|.++|.-.+.....++.++-.=. +|+|......-... ..-|.-.....+-+.-.|-.
T Consensus 591 ~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~ 669 (1133)
T KOG1943|consen 591 TLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG-TLMRQATLKFIEQLSLSKDRL 669 (1133)
T ss_pred hcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH-HHHHHHHHHHHHHhhhccchh
Q ss_pred ---CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhH
Q 007426 77 ---NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTA 151 (604)
Q Consensus 77 ---~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQs 151 (604)
-++--..+++...+ +++. .+|++-+++++.+. .|.. .+++... ||+.-...+- ++.-.
T Consensus 670 ~~~~v~e~~~~ll~~~l---~~~n---~i~~~av~av~~l~s~y~~----~d~~~~~-------~li~~~ls~~~~~~~~ 732 (1133)
T KOG1943|consen 670 FQDFVIENWQMLLAQNL---TLPN---QIRDAAVSAVSDLVSTYVK----ADEGEEA-------PLITRYLSRLTKCSEE 732 (1133)
T ss_pred HHHHHHHHHHHHHHHhh---cchH---HHHHHHHHHHHHHHHHHHh----cCchhhh-------HHHHHHHHHhcCchHH
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCC--------ccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHH
Q 007426 152 GAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEK--------STQTNSHMGLVMALAKHNALIVEAYARLLIQSGLR 223 (604)
Q Consensus 152 GAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~k--------s~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~ 223 (604)
--+.-+..+.+..+-.--.-.+-..+|..+...+.+. +..+.+|..-......-+..+ +.+-..|+++.-+
T Consensus 733 ~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~-~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESI-EKFRETLLNALDD 811 (1133)
T ss_pred HHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHhh
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHhhcC-CCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 224 ILNAGPGEANSQKRLLAIQMLNFLMKSLD-PRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 224 ~L~~~~~ssDWq~RKAAAeaL~~la~~~d-~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
-.-++=..=-.=.|+||--++..+...+- ++.|.+.. ..|+..|=+--+|||.--|+-+..+++
T Consensus 812 Yttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 812 YTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred cccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
No 89
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.20 E-value=36 Score=36.43 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred hhHHHhhhccCCCCC-------CCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH
Q 007426 42 IPLFLAQVSETKENG-------SVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIA 114 (604)
Q Consensus 42 lP~FLscV~dtd~~~-------s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA 114 (604)
+|.-|+||-..+-.. -..|+++=+|++.+++-||..---..++|+.++.|.|.|+..++..+=++.-...+|.
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 788888886542111 2679999999999999999886667889999999999999987755555555555544
No 90
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=54.45 E-value=1.4e+02 Score=35.64 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426 83 DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD 162 (604)
Q Consensus 83 ~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE 162 (604)
.+|+--|.|.+.|.+ +.+|..|...++..+-++--+. -+..|+.. ++=| ++-+++-.++--.++|++++||
T Consensus 388 ~~IlplL~~S~~~~~--~~iQ~~~L~~lptv~e~iD~~~----vk~~ilP~-l~~l--~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSD--VQIQELALQILPTVAESIDVPF----VKQAILPR-LKNL--AFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred HHHHHHHHHHhcCcc--hhhHHHHHHhhhHHHHhccHHH----HHHHHHHH-hhcc--hhcccchHHHHHHHHHHHHHHH
Confidence 344445555555554 4456666666666665555111 01112211 1112 3334444556666666666665
Q ss_pred c
Q 007426 163 S 163 (604)
Q Consensus 163 s 163 (604)
.
T Consensus 459 ~ 459 (700)
T KOG2137|consen 459 R 459 (700)
T ss_pred H
Confidence 3
No 91
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.10 E-value=71 Score=37.44 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=109.7
Q ss_pred hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCC---HHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh
Q 007426 133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFAS---DEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL 208 (604)
Q Consensus 133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap---~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~ 208 (604)
++.|-|.|-|-++-| .||+=|-++|-.=.-.... +.....||.......... +.| ++++++......+..
T Consensus 4 ~i~r~ltdKlYekRK----aaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n--~rkGgLiGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRK----AAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHAN--MRKGGLIGLAAVAIALGIK 77 (675)
T ss_pred HhhhhhhhHHHHHHH----HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccc--cccchHHHHHHHHHHhccc
Confidence 455666777766665 3677777776521100011 123334555554444432 334 688887766666666
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 209 IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 209 iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
... |.+.++.-.+.|+. ..|.+.|--|-|.|.-|++...++ +-.+++.+-++|=.---|-=.-||+++----.+
T Consensus 78 ~~~-Y~~~iv~Pv~~cf~----D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 78 DAG-YLEKIVPPVLNCFS----DQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred cHH-HHHHhhHHHHHhcc----CccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 655 99999999999999 579999999999999999999654 556999999999888889999999999888888
Q ss_pred HHHhhhcCCC
Q 007426 289 AKRIAAENGP 298 (604)
Q Consensus 289 wK~Ia~~~g~ 298 (604)
-|.|..+.-+
T Consensus 152 ikdIVte~~~ 161 (675)
T KOG0212|consen 152 IKDIVTESAS 161 (675)
T ss_pred HHHhcccccc
Confidence 8888877643
No 92
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=53.73 E-value=84 Score=33.32 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=58.2
Q ss_pred ChhHHHhhhccC-CCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc----cCCCCChh-hHHHHHHHHHHH
Q 007426 41 AIPLFLAQVSET-KENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL----ASSAGSFP-LQQACSRVVPAI 113 (604)
Q Consensus 41 tlP~FLscV~dt-d~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL----sDsdSS~~-vR~AC~kvv~AL 113 (604)
-+|+++..|... ....+ .-..|.|.|++++.+-.|..+.|.++.|+..+..-- .+-...+| +|.+.-+-+.++
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 488888877654 21212 235689999999999999999999999999886543 33333455 899999999999
Q ss_pred HhhcC
Q 007426 114 ARYGI 118 (604)
Q Consensus 114 Ary~i 118 (604)
..++.
T Consensus 148 ~~~~f 152 (319)
T PF08767_consen 148 NEHCF 152 (319)
T ss_dssp HHHHT
T ss_pred HHHhH
Confidence 97754
No 93
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=51.82 E-value=1.8e+02 Score=35.31 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred ccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHH-HHHHHHHH
Q 007426 145 SQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYAR-LLIQSGLR 223 (604)
Q Consensus 145 qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~-~Ll~S~l~ 223 (604)
-|-.|-.=||.||..+-..- ++.-...+-.+.+.+...|+++- +|+. =+|.+.-..+...|.. -..+.+++
T Consensus 307 aN~~v~~~aa~~l~~ia~~l--r~~~~~~~~~v~p~lld~lkekk----~~l~--d~l~~~~d~~~ns~~l~~~~~~I~e 378 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKL--RPLFRKYAKNVFPSLLDRLKEKK----SELR--DALLKALDAILNSTPLSKMSEAILE 378 (815)
T ss_pred cchhHHHHHHHHHHHHHHhc--chhhHHHHHhhcchHHHHhhhcc----HHHH--HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34456777889998877753 33444566678888999998863 3332 1122222222222222 24455555
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426 224 ILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295 (604)
Q Consensus 224 ~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~ 295 (604)
.|. +.+.|.|--=.+.|...+...++.....+. ..++..+=..=-|+=++||.|+.+++-+-.++-|+
T Consensus 379 ~lk----~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 379 ALK----GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred Hhc----CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 555 889999888788888888777644444332 55666666667899999999999999887777665
No 94
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.70 E-value=4.2e+02 Score=32.56 Aligned_cols=124 Identities=14% Similarity=0.242 Sum_probs=86.6
Q ss_pred cCCchhHHHHHHHHHHHHhhcCCCCh----hHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhh
Q 007426 17 DKDADSRKSAMKALKSYVKDLDSKAI----PLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKT 92 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~Ld~dtl----P~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRR 92 (604)
..|.-+|=+|++.|.+.|+. |++.+ +..|.||-|+|.+ .|+.++.|.-.| +-..+|.+.+.+||..+...
T Consensus 324 n~d~NirYvaLn~L~r~V~~-d~~avqrHr~tIleCL~DpD~S---IkrralELs~~l--vn~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 324 NRDNNIRYVALNMLLRVVQQ-DPTAVQRHRSTILECLKDPDVS---IKRRALELSYAL--VNESNVRVMVKELLEFLESS 397 (866)
T ss_pred CCccceeeeehhhHHhhhcC-CcHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHH--hccccHHHHHHHHHHHHHhc
Confidence 45888899999999988874 55553 5689999887763 799999987655 56678888888888888775
Q ss_pred ccCCCCChhhHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 93 LASSAGSFPLQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 93 LsDsdSS~~vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
|.+ ++.-|+--|.-+| +|. |.. .-+.--++-.|-+--..|---..--+-.+|-+
T Consensus 398 --d~~----~k~~~as~I~~laEkfa--P~k---------~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 398 --DED----FKADIASKIAELAEKFA--PDK---------RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN 452 (866)
T ss_pred --cHH----HHHHHHHHHHHHHHhcC--Ccc---------hhHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 666 6899999999999 773 322 22333333344444445555555556666654
No 95
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=51.15 E-value=49 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426 235 QKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIA 293 (604)
Q Consensus 235 q~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia 293 (604)
..|-+|...|.++. ...+..+-..+..+|..|=++-.| ..+|+.++.++|+-||+-=
T Consensus 4 ~~rH~~VLGL~Alv-~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALV-LAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHH-TT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 36889999999987 555889999999999999999997 9999999999999999874
No 96
>PRK09169 hypothetical protein; Validated
Probab=50.63 E-value=7.9e+02 Score=33.65 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=66.6
Q ss_pred HHHhhhcCCchhHHHHHHHHHH--------HHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH
Q 007426 11 QELANLDKDADSRKSAMKALKS--------YVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI 82 (604)
Q Consensus 11 qeL~KLs~DRDT~~iA~~eLes--------iak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL 82 (604)
...|+|+|-+|+.. .++.+.. ..+.|++..|+.+|+.++ +.|+...=+.+.+.+...-..-++++-.+-
T Consensus 127 ~l~n~lsK~~d~~a-C~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalS--KWP~~~~c~~aa~~lA~~la~~~~l~~al~ 203 (2316)
T PRK09169 127 HLGNKLSKYPDRPA-CMAAIAWIAGQLLDALREALDAISFALLLNALS--KWPDNTDCQTAAEQLADRLASDSRLLQAMD 203 (2316)
T ss_pred HHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhccCHHHHHhcc
Confidence 35677787766543 3334444 445778999999999999 788764433444444333333455566667
Q ss_pred HHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 83 DSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 83 ~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
++=++..+--| +=|++ .+|.+++..|+..+.
T Consensus 204 ~q~va~~lnalSKwp~~-----~~cr~a~~~lA~rL~ 235 (2316)
T PRK09169 204 AQEVANALNALSKWPDS-----PRCRNAAERLAERLA 235 (2316)
T ss_pred hHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHh
Confidence 78888888887 44553 699999999996665
No 97
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=50.50 E-value=2.4e+02 Score=31.63 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=107.9
Q ss_pred chhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhh
Q 007426 59 SGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL---ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLC 135 (604)
Q Consensus 59 vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL---sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~ 135 (604)
--+|-.+-+=-+.-+-++.+.|+...|+..++..| +..-|=..--.-|-+++++|-||+-+. ..+.-.-|-..+
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~---~~~~v~~~E~~L 118 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA---DPEAVSQFEEAL 118 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG---GHH---HHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC---ChhHHHHHHHHH
Confidence 34555544444445567788999888887777666 333333333468999999999996521 001011234445
Q ss_pred chhHHhhhccc--c---hh-hHHHHHHHHHHhccCCCCCCCHHHHHHHHHH-HHHhhcCCccchhhHHHHHHHHHHhhhh
Q 007426 136 KPLSDSLLGSQ--E---SL-TAGAALCLKALVDSDNWRFASDEMVNKVCQN-VAGALEEKSTQTNSHMGLVMALAKHNAL 208 (604)
Q Consensus 136 KPL~EaL~~qq--e---~v-QsGAALCLAAlVEs~nwr~Ap~elv~rlc~R-v~kaL~~ks~qtkAhl~LV~ALs~~n~~ 208 (604)
=|.|.-+..++ | +| |+ ||.++|...-..-|+ ....+.+- +...|=+....-.|...|+-|..+..+.
T Consensus 119 ~P~f~~ILq~dV~EF~PYvfQI-----la~Lle~~~~~~~p~-~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 119 FPPFQEILQQDVQEFIPYVFQI-----LAQLLELRPSSPLPD-AYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHTT-TTTHHHHHHH-----HHHHHHHSS--S--T-TTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCCCCcH-HHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 55555555554 3 23 76 567777642011222 22333332 3344444333334888888888888877
Q ss_pred HHHH--hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426 209 IVEA--YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM 267 (604)
Q Consensus 209 iiea--~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L 267 (604)
.+.+ +...++.--..+|.. |..| --|-+.|..|...+..+.|..+...++..|
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~s--k~~D----~~gF~LL~~iv~~~p~~~l~~yl~~I~~ll 247 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIAS--KAND----HYGFDLLESIVENLPPEALEPYLKQIFTLL 247 (435)
T ss_dssp G----S-CHHHHHHHHHHHT---TTCH----HHHHHHHHHHHHHS-HHHHGGGHHHHHHHH
T ss_pred hhcchhhHHHHHHHHHHHHCC--CCcc----hHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 6532 334566666667763 2333 337789999999998877888887776543
No 98
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=50.49 E-value=72 Score=29.62 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH------HHHHHHHHhccCCCccchhHHHHHHH
Q 007426 213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL------ELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~------~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
++.-.++++..-|. ..+-..-.-|...|..+++..+.. +-.++ ..+.+.+.....+..+.||+-+.+.+
T Consensus 39 ~~kea~~~l~krl~----~~~~~vq~~aL~lld~lvkNcg~~-f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 39 GAKEAARALRKRLK----HGNPNVQLLALTLLDALVKNCGPR-FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp HHHHHHHHHHHHHT----TSSHHHHHHHHHHHHHHHHHSHHH-HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHcCCHH-HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 33444566666666 688888889999999999988643 33332 33444444455554455999999999
Q ss_pred HHHHHhh
Q 007426 287 QTAKRIA 293 (604)
Q Consensus 287 q~wK~Ia 293 (604)
+.|..--
T Consensus 114 ~~W~~~f 120 (140)
T PF00790_consen 114 QEWAEAF 120 (140)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999765
No 99
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=49.59 E-value=63 Score=28.49 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHH
Q 007426 148 SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEA 212 (604)
Q Consensus 148 ~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea 212 (604)
.+--=||-.|+.++.. +...-..+-.|+..-..++|.++..--..|.+++..|+.+++.++..
T Consensus 21 ~LRd~AA~lL~~I~~~--~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr~ 83 (92)
T PF07571_consen 21 ALRDFAASLLAQICRK--FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVRA 83 (92)
T ss_pred HHHHHHHHHHHHHHHH--hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556688888888874 33344567778888888999988665558999999999998877654
No 100
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=48.93 E-value=2e+02 Score=29.02 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=72.8
Q ss_pred HhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHh
Q 007426 13 LANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITK 91 (604)
Q Consensus 13 L~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVR 91 (604)
+.|-. |+....-.++.|-..+.+=+ ..+|+|+.-|..=-+.+. ..+--+++||..+-... +-..|+|.+++.-...
T Consensus 9 l~~~~-~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 9 LGKIS-DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHFPFLQPLLLLLIL 85 (234)
T ss_pred hcCCC-ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHh
Confidence 44444 66666667777777777555 789999877654333222 22446789998887654 4455999988887444
Q ss_pred hc----cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh-cccch
Q 007426 92 TL----ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL-GSQES 148 (604)
Q Consensus 92 RL----sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~-~qqe~ 148 (604)
|. ++.+......-+|+-.+..+. ..+|..+ ..++.+|.+.|- ..++.
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic--~~~p~~g--------~~ll~~ls~~L~~~~~~~ 137 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDIC--CSRPDHG--------VDLLPLLSGCLNQSCDEV 137 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHH--HhChhhH--------HHHHHHHHHHHhccccHH
Confidence 43 222322222224444444443 3355421 468899999994 44443
No 101
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=47.40 E-value=82 Score=30.17 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=78.6
Q ss_pred ChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 41 AIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGAN-IVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 41 tlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~-iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
.+..+.++|..- .+.....|-..++|+.++++.=|.. +.-|-..-+..++..|..+++ ..+..+|..+...|-.++.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~-~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDP-PSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 455555555543 2222456889999999999997544 558889999999999988775 4477888899998888877
Q ss_pred C-CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 119 D-PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 119 d-p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+ |...-+..-.-+..|..+|...+.. ..+..-+-=+|++++..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5 6554343334445555555554332 23444444455666654
No 102
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=45.58 E-value=1.7e+02 Score=26.42 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHH
Q 007426 195 HMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGME 268 (604)
Q Consensus 195 hl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE 268 (604)
=|..++.+.++++.-+... ++-+.-||+.++... ..|..|.++.+.+.+.++...|...++.++.++-
T Consensus 35 ~l~si~~lI~~~~~~i~~~----~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 35 ALRSIEELIKLGGSHISSA----RPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3444455555544444444 444455555544333 8999999999999999999888888887776653
No 103
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=45.46 E-value=3.8e+02 Score=30.42 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=116.6
Q ss_pred chhhHHHHHHHHH--HHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHH-HHHHHHhhcCCCCCccccchhhHHhhh
Q 007426 59 SGEYTISLYEVLA--RVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSR-VVPAIARYGIDPTTPEDKKRHIIHSLC 135 (604)
Q Consensus 59 vRke~I~Lle~LA--rvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~k-vv~ALAry~idp~~~~~~~~~ii~sl~ 135 (604)
-|.+.++-+...+ +....-|.|-.--++..+.|-+.-+.| =++.-.. +++.+.- |..+..+.++.+.+.-
T Consensus 76 tR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~s---d~q~~a~~~~g~~~v----qlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 76 TRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKS---DEQLLAAALIGLLCV----QAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHH----hccCcchhhHHHhccc
Confidence 4666666555443 444666888888888889999977765 1343333 4444442 3344556667777777
Q ss_pred chhHHhhhcccchhhHHHH--HHHHHHhccCCCCCCCHH---HHHHHHHHHHHh--hcCCccchh----hHHHHHHHHHH
Q 007426 136 KPLSDSLLGSQESLTAGAA--LCLKALVDSDNWRFASDE---MVNKVCQNVAGA--LEEKSTQTN----SHMGLVMALAK 204 (604)
Q Consensus 136 KPL~EaL~~qqe~vQsGAA--LCLAAlVEs~nwr~Ap~e---lv~rlc~Rv~ka--L~~ks~qtk----Ahl~LV~ALs~ 204 (604)
.-++-.+..+..++++-++ -||+-..=.+. +... .+...|.-...+ |++..+.+. +|..+.-++..
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~---~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAE---ADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTA 225 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHH
Confidence 7788888888888865544 44443222111 1222 222233222111 454333332 34333333211
Q ss_pred hh-hh--HHHHhHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccc
Q 007426 205 HN-AL--IVEAYAR----LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAY 277 (604)
Q Consensus 205 ~n-~~--iiea~g~----~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~ 277 (604)
-. .+ ..++.+. .+.+..-..|. ...-..|.||.++++.+.. .++.-|||-+-|
T Consensus 226 ~a~~Lti~~~~~~~~~~~~~~p~i~~lLs----~~~vn~r~aa~et~a~l~e----------------~~q~~~~~f~~~ 285 (427)
T KOG2842|consen 226 WSLLLTICPEALSEQLDAALAPKLPLLLS----SERVNERIAAGETLALLFE----------------LAQDSEFDFIYP 285 (427)
T ss_pred HHHHHHcCccchhhHHHHHhccchHHHhc----cchhhhhhhhhhhHHHHHH----------------HHhcccccccCC
Confidence 11 11 1111122 23355556666 7888999999999888752 345667888888
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 007426 278 VKGASLEALQTAKRIAAE 295 (604)
Q Consensus 278 VR~am~eALq~wK~Ia~~ 295 (604)
=++...+.|++-+..+.+
T Consensus 286 d~e~l~~~lr~latdssK 303 (427)
T KOG2842|consen 286 DMEQLLSTLRDLATDSSK 303 (427)
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 888888777777766544
No 104
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=44.92 E-value=2.6e+02 Score=26.58 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHH-----HH
Q 007426 144 GSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARL-----LI 218 (604)
Q Consensus 144 ~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~-----Ll 218 (604)
.+.+.+..-|++|+++..|. ..+-.++.|......+=.++.. ..++.++.+|+.+=|...+.+..- ++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~------~~~~~~~~~~~~i~~~~~~~~~-d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA------AREEFKEKISDFIESLLDEGEM-DSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCHHC-CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred CCCHhHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 46678899999999999875 4556778887766665543321 257777777777777665555443 44
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhc
Q 007426 219 QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENC 270 (604)
Q Consensus 219 ~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~c 270 (604)
+..++... -++.|-..-+++.|+|+. ++.++ .-..++ ..++..||.-
T Consensus 89 ~~l~~~~~--~~~~~~~~~~~~lell~a--Ac~d~-~~r~~I~~~~~~~L~~~ 136 (157)
T PF11701_consen 89 ESLLPLAS--RKSKDRKVQKAALELLSA--ACIDK-SCRTFISKNYVSWLKEL 136 (157)
T ss_dssp HHHHHHHH---CTS-HHHHHHHHHHHHH--HTTSH-HHHHCCHHHCHHHHHHH
T ss_pred HHHHHHHh--cccCCHHHHHHHHHHHHH--HHccH-HHHHHHHHHHHHHHHHH
Confidence 55555554 125677888899999987 36653 344444 5567777654
No 105
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=44.73 E-value=4.8e+02 Score=29.02 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCC--CCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCC
Q 007426 22 SRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENG--SVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGS 99 (604)
Q Consensus 22 T~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~--s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS 99 (604)
.|--|+++|...++.-..+.++.--.+..|=-++. ...|.-++.||..+.........+.= ...-+.+.++..
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~- 80 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSN- 80 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCC-
Confidence 34458899999999888888888888777653333 24699999999999988876433222 222222233321
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 007426 100 FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQ 179 (604)
Q Consensus 100 ~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~ 179 (604)
...=+.-.++.-+|...+.|-.+.+.+-...+..+..|++++....-..... +... .+....+
T Consensus 81 ~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~-------~~~~------~~~~~~~---- 143 (464)
T PF11864_consen 81 DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKK-------SSSS------KSKGLSN---- 143 (464)
T ss_pred chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhc-------cccc------ccccccc----
Confidence 0112478899999999999977777777777777887777333222111100 0000 0110000
Q ss_pred HHHHhhcCCccchhhHHHHHHHHHHhhhhHHH-HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh
Q 007426 180 NVAGALEEKSTQTNSHMGLVMALAKHNALIVE-AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS 258 (604)
Q Consensus 180 Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iie-a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s 258 (604)
+..........|.++.-+.|.|.-.++ .....+|+.+..+-.. +++-.-.++..+.|..|..... .=.+
T Consensus 144 -----~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~---Ts~~~di~~~L~vldaii~y~~--iP~~ 213 (464)
T PF11864_consen 144 -----LDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKS---TSSEDDIEACLSVLDAIITYGD--IPSE 213 (464)
T ss_pred -----ccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHcCc--CChH
Confidence 000000111367777777888855433 5556677777776432 5566777899999999876443 2233
Q ss_pred hHHHHHHHHH
Q 007426 259 ELELIIEGME 268 (604)
Q Consensus 259 e~~S~I~~LE 268 (604)
-+..||.+|=
T Consensus 214 sl~~~i~vLC 223 (464)
T PF11864_consen 214 SLSPCIEVLC 223 (464)
T ss_pred HHHHHHHHHh
Confidence 4578888873
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.84 E-value=4.9e+02 Score=28.55 Aligned_cols=217 Identities=14% Similarity=0.175 Sum_probs=110.6
Q ss_pred hcCCchhHHHHHHHHHHHHhhc------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC-CCcccHHHHHHH
Q 007426 16 LDKDADSRKSAMKALKSYVKDL------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA-NIVPQIDSIMTT 88 (604)
Q Consensus 16 Ls~DRDT~~iA~~eLesiak~L------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~-~iaPhL~KImst 88 (604)
|+.+..-|..|.+-|+-.+.+- -.-.++.|+..=.+.+.....-|+|+++|...+..++++ .-.| .-||.+
T Consensus 35 L~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~--~~vvra 112 (371)
T PF14664_consen 35 LSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP--RGVVRA 112 (371)
T ss_pred CCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC--HHHHHH
Confidence 4435566667777776555421 122355666554444433345699999999999999753 2222 122333
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
||=-.-+++= .+|.+|..+++-|+ +.+|.-- +-..-.++|.++|.+..-.++.-....+-.++|.-+-|.
T Consensus 113 lvaiae~~~D--~lr~~cletL~El~--l~~P~lv------~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 113 LVAIAEHEDD--RLRRICLETLCELA--LLNPELV------AECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred HHHHHhCCch--HHHHHHHHHHHHHH--hhCHHHH------HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 3322222322 37999999999999 4455321 001134888999987332233334444455667643221
Q ss_pred --CCHHHHHHHHHHHHHh----hcCCc--cchh-hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426 169 --ASDEMVNKVCQNVAGA----LEEKS--TQTN-SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRL 238 (604)
Q Consensus 169 --Ap~elv~rlc~Rv~ka----L~~ks--~qtk-Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RK 238 (604)
-++=.+..+.-=.+-. .++++ .+.+ +-+.++..|=.-+|++.-. +.-..+++.+++|. -.+-..|+
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~----~p~~~ir~ 258 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR----LPNPEIRK 258 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc----CCCHHHHH
Confidence 1111111111111111 11111 1111 3333333333344443111 22145788888887 45666888
Q ss_pred HHHHHHHHHH
Q 007426 239 LAIQMLNFLM 248 (604)
Q Consensus 239 AAAeaL~~la 248 (604)
+-.++|-.+.
T Consensus 259 ~Ildll~dll 268 (371)
T PF14664_consen 259 AILDLLFDLL 268 (371)
T ss_pred HHHHHHHHHH
Confidence 8888887776
No 107
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.74 E-value=3.6e+02 Score=33.48 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=107.3
Q ss_pred CCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH
Q 007426 54 ENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH 132 (604)
Q Consensus 54 ~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~ 132 (604)
+|++ ..-+.||.-+..+|..-|..-.|.|++.+.++-+.=-+.- -+.+-..|.+.+|+++-|..+-+.. +.
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~-n~ql~~Tss~~igs~s~~l~e~P~~-------ln 548 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAP-NPQLLSTSSDLIGSLSNWLGEHPMY-------LN 548 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccC-ChhHHHHHHHHHHHHHHHHhcCCcc-------cC
Confidence 4444 4468899999999999999999999999988876532211 1235579999999999887763332 23
Q ss_pred hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHH
Q 007426 133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEA 212 (604)
Q Consensus 133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea 212 (604)
..+-=||++|.......|+=.- ++++|. -.+.-+.+
T Consensus 549 ~sl~~L~~~Lh~sk~s~q~i~t-------------------l~tlC~-------------------------~C~~~L~p 584 (982)
T KOG2022|consen 549 PSLPLLFQGLHNSKESEQAIST-------------------LKTLCE-------------------------TCPESLDP 584 (982)
T ss_pred chHHHHHHHhcCchHHHHHHHH-------------------HHHHHH-------------------------hhhhhCch
Confidence 3444466666533333332111 344443 11223367
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH----HHHHHHHHhc
Q 007426 213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL----ELIIEGMENC 270 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~----~S~I~~LE~c 270 (604)
|+..++....+.|..+. --=-.|...-..|..++....++.+.+++ +.|+.-+|.|
T Consensus 585 y~d~~~a~~~e~l~~~~--~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~ 644 (982)
T KOG2022|consen 585 YADQFSAVCYEVLNKSN--AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEIN 644 (982)
T ss_pred HHHHHHHHHHHHhcccc--cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888532 22346888888899998877755555553 6677888887
No 108
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=41.44 E-value=2.1e+02 Score=26.26 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 007426 176 KVCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDP 253 (604)
Q Consensus 176 rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~ 253 (604)
-+..++...|.+.....- -....+.|+-.+... ...+..+.++-+.-||+.++...+ -|..|.++.+.+.+.++.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 355667777777653331 233333343333331 123333344445556666555444 999999999999999998
Q ss_pred CchhhhHHHHHHHHH
Q 007426 254 RSIFSELELIIEGME 268 (604)
Q Consensus 254 ~~L~se~~S~I~~LE 268 (604)
..|..-++.++.++-
T Consensus 88 ~~l~~ll~~~~~~i~ 102 (107)
T smart00802 88 EELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887776664
No 109
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.34 E-value=99 Score=32.10 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=91.5
Q ss_pred ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHH--------HHHHHHhhccCCCCChhhHHHHHHHHHH
Q 007426 41 AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDS--------IMTTITKTLASSAGSFPLQQACSRVVPA 112 (604)
Q Consensus 41 tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~K--------ImstIVRRLsDsdSS~~vR~AC~kvv~A 112 (604)
-...|++.+... .+..-+.+|.+.|+..+.+.++ ...+.+-. .....+|-|..+|. + ++..++...+.
T Consensus 56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~-~-i~~~a~~iLt~ 131 (312)
T PF03224_consen 56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDRNDS-F-IQLKAAFILTS 131 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S-SSH-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcCCCH-H-HHHHHHHHHHH
Confidence 356677777655 2334579999999999999998 33333322 66778886666674 3 57777778888
Q ss_pred HHhhcCCCCCccccchhhHHhhhchhHHhhhcccc----hhhHHHHHHHHHHhccCCCCCCCHHHH--HHHHHHHHHhhc
Q 007426 113 IARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE----SLTAGAALCLKALVDSDNWRFASDEMV--NKVCQNVAGALE 186 (604)
Q Consensus 113 LAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe----~vQsGAALCLAAlVEs~nwr~Ap~elv--~rlc~Rv~kaL~ 186 (604)
|..+..+... .....++.++++.|..+.. .+|..+.-||+.+...... ...+ ++..+.+...|.
T Consensus 132 Ll~~~~~~~~------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~----R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 132 LLSQGPKRSE------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY----RQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HHTSTTT--H------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH----HHHHHTHHHHHHHHHHHH
T ss_pred HHHcCCcccc------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh----HHHHHhcCcHHHHHHHHH
Confidence 8766432211 1113566888888776443 3578889999999875331 1222 334455555661
Q ss_pred -----C--CccchhhHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426 187 -----E--KSTQTNSHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAI 241 (604)
Q Consensus 187 -----~--ks~qtkAhl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAA 241 (604)
. .++|--=+.-++.=+...++.+++.-- ..+++...++++.+.|+ =-.|.+=+
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE--KvvRv~la 262 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE--KVVRVSLA 262 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH--HHHHHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc--hHHHHHHH
Confidence 1 111111122223233334433322211 11677777777754432 24444433
No 110
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.28 E-value=2.3e+02 Score=26.13 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHH--HHHHHHhccCC--C-ccchhHHHHHHHH
Q 007426 213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELEL--IIEGMENCQSD--Q-MAYVKGASLEALQ 287 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S--~I~~LE~cRfD--K-Vk~VR~am~eALq 287 (604)
++.-.++++..=|. ..+-....-|...|-.+++..+. .+..++++ .+..|...-.. + -+.||.-+.+.++
T Consensus 34 ~~k~a~raL~krl~----~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 34 GPKEAARAIRKKIK----YGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 33334555555565 67899999999999999999974 34445433 44446555554 3 4479999999999
Q ss_pred HHHHhhhcC
Q 007426 288 TAKRIAAEN 296 (604)
Q Consensus 288 ~wK~Ia~~~ 296 (604)
.|..--+.+
T Consensus 109 ~W~~~f~~~ 117 (133)
T cd03561 109 AWSESFGGH 117 (133)
T ss_pred HHHHHhcCC
Confidence 999765443
No 111
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=40.19 E-value=5.9e+02 Score=31.80 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC-------
Q 007426 46 LAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI------- 118 (604)
Q Consensus 46 LscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i------- 118 (604)
+-||...-+++.-+|.++=-=+..|.-.|| .=.++.+...+.++|+++|++-. --|-+|+.
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~qle~~~~---------f~~aL~~va~~~~~sl~lRQ~A~---v~L~~yie~hW~~~~ 74 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLKQLELTEG---------FGVALAEVAANKDASLPLRQIAL---VLLKRYIEKHWSPNF 74 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHhccccchH---------HHHHHHHHHhCcccCchHHHHHH---HHHHHHHHHhCCChH
Q ss_pred ----CCC-CccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh
Q 007426 119 ----DPT-TPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN 193 (604)
Q Consensus 119 ----dp~-~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk 193 (604)
+|. ..++.|..|-..+++-|- ..+.-+-.|+|.|+....-- -| |++. .++.+.|.++|.. ..++
T Consensus 75 E~fr~~~~~~e~~K~~IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~-D~---Pd~W-pElv~~i~~~l~~--~n~n 143 (1005)
T KOG2274|consen 75 EAFRYPLIVSEEVKALIREQLLNLLD----DSNSKIRSAVAYAISSIAAV-DY---PDEW-PELVPFILKLLSS--GNEN 143 (1005)
T ss_pred hhccCCCcccHHHHHHHHHHHHhhhh----ccccccchHHHHHHHHHHhc-cC---chhh-HHHHHHHHHHHhc--cchh
Q ss_pred hHHHHHHHHHHhhhhH----HHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHh
Q 007426 194 SHMGLVMALAKHNALI----VEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMEN 269 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~i----iea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~ 269 (604)
+|.+....|...-..+ ..--|...+.....+..-...-++-+.=+||. ...+.+|++-+++
T Consensus 144 ~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~---------------~~lf~sc~~li~~ 208 (1005)
T KOG2274|consen 144 SIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR---------------GKLFTSCLTLITN 208 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh---------------hHHHHHHHHHHhH
Q ss_pred ccCCCccchhHHHHHHHHHHHHh
Q 007426 270 CQSDQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 270 cRfDKVk~VR~am~eALq~wK~I 292 (604)
..-=+-..||.-+.+-++.|-.+
T Consensus 209 ~~e~~~~~~~~~~s~~l~~~~~~ 231 (1005)
T KOG2274|consen 209 VEEVWAEHVKVFLSQILNQFMDI 231 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.58 E-value=2.2e+02 Score=34.28 Aligned_cols=245 Identities=20% Similarity=0.240 Sum_probs=127.9
Q ss_pred HHHHhhhcCCchhH--HHHHHHHHHHHhhcC--CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC------c
Q 007426 10 RQELANLDKDADSR--KSAMKALKSYVKDLD--SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI------V 79 (604)
Q Consensus 10 rqeL~KLs~DRDT~--~iA~~eLesiak~Ld--~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i------a 79 (604)
-+.|..|.-|+|.+ .-|++.|-..-+.+- ......-.--+. |+- .-||+.+|.|+-+++..|+.-+ .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~ls--D~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLS--DDY-EDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhc--chH-HHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 34477777788876 668888655544221 111111111122 222 3589999999999999996111 1
Q ss_pred ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhh-HHhhhchhHHhhhcccchhhHHHHHHHH
Q 007426 80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHI-IHSLCKPLSDSLLGSQESLTAGAALCLK 158 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~i-i~sl~KPL~EaL~~qqe~vQsGAALCLA 158 (604)
-+.....+.|-+-++|- |+.||.--+|+.|.+-.-. +++ -..|-|-|.--|--+ -+|-=-=+
T Consensus 277 kl~D~aF~~vC~~v~D~--sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRk-----r~ahkrpk 339 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDR--SLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRK-----RTAHKRPK 339 (823)
T ss_pred hhHHHHHHHHHHHHhcC--ceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhh-----hhcccchH
Confidence 24566667777777765 4556776667766554220 111 122333332211000 00000011
Q ss_pred HHhccCC------C-CCCCHHHHHH---------HHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 007426 159 ALVDSDN------W-RFASDEMVNK---------VCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQS 220 (604)
Q Consensus 159 AlVEs~n------w-r~Ap~elv~r---------lc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S 220 (604)
++..+-. | .++|-|.++. -|--..-.|++. |.-+ |-..-+++|+.-.|.. --.
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~F--------A~~ 410 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGF--------AVR 410 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCc--------HHH
Confidence 1222211 3 3445444332 233333333332 1111 2222233333332222 123
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhh-HHHHHHHHHhccCCCccchhHHHHHHHHHHH
Q 007426 221 GLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSE-LELIIEGMENCQSDQMAYVKGASLEALQTAK 290 (604)
Q Consensus 221 ~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se-~~S~I~~LE~cRfDKVk~VR~am~eALq~wK 290 (604)
++++|-+-+-.+.=-.|.=|+-+|..|+.++ .|-++ ..-++++|| |.+..||+++.+.|..++
T Consensus 411 aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~----D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 411 ALDFLVDMFNDEIEVVRLKAIFALTMISVHL---AIREEQLRQILESLE----DRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Confidence 4555554444566689999999999999875 35544 577888887 788999999999886654
No 113
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.56 E-value=89 Score=34.93 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHhhhcCCchhHHHHHHHHHHHH------hhc-CCCChhHHHhhhccCCCCC-CCchhhHHHHHHHHHHHhCCC--Cccc
Q 007426 12 ELANLDKDADSRKSAMKALKSYV------KDL-DSKAIPLFLAQVSETKENG-SVSGEYTISLYEVLARVHGAN--IVPQ 81 (604)
Q Consensus 12 eL~KLs~DRDT~~iA~~eLesia------k~L-d~dtlP~FLscV~dtd~~~-s~vRke~I~Lle~LArvHG~~--iaPh 81 (604)
|+.+-.-|+|...-+...|+.+| +.+ ++.+|...|.||.|..+.+ ...-|+|++||..||..-... |+-.
T Consensus 248 Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~ 327 (461)
T KOG4199|consen 248 EALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK 327 (461)
T ss_pred HHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh
Q ss_pred --HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH-hhcCCCCCc----cccchhhHHhhhc
Q 007426 82 --IDSIMTTITKTLASSAGSFPLQQACSRVVPAIA-RYGIDPTTP----EDKKRHIIHSLCK 136 (604)
Q Consensus 82 --L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA-ry~idp~~~----~~~~~~ii~sl~K 136 (604)
+++|+....|-+.|| .-|..+++.++ -++..|..+ +.++.....-.+|
T Consensus 328 gg~~~ii~l~~~h~~~p-------~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 328 GGLDKIITLALRHSDDP-------LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred cChHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
No 114
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.78 E-value=6e+02 Score=28.14 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=65.3
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHhhcC-------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-H
Q 007426 12 ELANLDKDADSRKSAMKALKSYVKDLD-------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-D 83 (604)
Q Consensus 12 eL~KLs~DRDT~~iA~~eLesiak~Ld-------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~ 83 (604)
.++..+-|.+++..|+++|+-+|+++| ...+++.|..|-+++ ..+|+.+.++++++++--+..-.--+ .
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~---~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSD---AELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 456667799999999999999999997 456788888444333 45899999999999985543210000 0
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 84 SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 84 KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
.-..++++.|+..+ +.++ =+++..|++.-+.
T Consensus 166 ~~L~~Ll~~ls~~~-~~~~---r~kaL~AissLIR 196 (342)
T KOG2160|consen 166 GALSKLLKILSSDD-PNTV---RTKALFAISSLIR 196 (342)
T ss_pred ccHHHHHHHHccCC-CchH---HHHHHHHHHHHHh
Confidence 12455666676333 3433 3556666664443
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=37.74 E-value=5.5e+02 Score=30.92 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCC----------hhHHHhhhccCCCCCCCchhhHHHHHHHHH
Q 007426 2 GRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKA----------IPLFLAQVSETKENGSVSGEYTISLYEVLA 71 (604)
Q Consensus 2 gr~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dt----------lP~FLscV~dtd~~~s~vRke~I~Lle~LA 71 (604)
|+.|-.+++..++.=+ .-|=+++|+++... |..++..|...++ .+..+..+++||
T Consensus 452 g~gL~~L~~ra~~~~D----------~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~-----ee~~vE~LGiLa 516 (708)
T PF05804_consen 452 GNGLQSLMKRALKTRD----------PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDS-----EEFVVECLGILA 516 (708)
T ss_pred cCcHHHHHHHHHhccc----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCc-----HHHHHHHHHHHH
Q ss_pred HH--hCCCCcccHHH--HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH--hhhchhHHhhhcc
Q 007426 72 RV--HGANIVPQIDS--IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH--SLCKPLSDSLLGS 145 (604)
Q Consensus 72 rv--HG~~iaPhL~K--ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~--sl~KPL~EaL~~q 145 (604)
.. .+....-.+.+ ++-.|.+.|....+--.+.-.++-.+|++| ..++....+. -++..|++.|..+
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--------~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--------SDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--------CCHHHHHHHHhCChHHHHHHHHHhh
Q ss_pred cchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHH
Q 007426 146 QESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLR 223 (604)
Q Consensus 146 qe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~ 223 (604)
|| .+|+|-+++--...+|.-+.++.. .+-.++.-|+.+-... .+--+..-..++.
T Consensus 589 qe----------------------DdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 589 QE----------------------DDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDNALD 645 (708)
T ss_pred Cc----------------------hHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHHHHH
Q ss_pred HhcCCCCCCCHHHHH
Q 007426 224 ILNAGPGEANSQKRL 238 (604)
Q Consensus 224 ~L~~~~~ssDWq~RK 238 (604)
++.+- ..+|+.|.
T Consensus 646 ii~e~--d~~w~~ri 658 (708)
T PF05804_consen 646 IIAEY--DEEWAERI 658 (708)
T ss_pred HHHHh--CHHHHHHh
No 116
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=36.96 E-value=5.4e+02 Score=27.35 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhh---hhHHHHhHHHHHHHHH-----HHhcCC-----C-CCCCHH
Q 007426 170 SDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHN---ALIVEAYARLLIQSGL-----RILNAG-----P-GEANSQ 235 (604)
Q Consensus 170 p~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n---~~iiea~g~~Ll~S~l-----~~L~~~-----~-~ssDWq 235 (604)
..+++..+-|-+.+.+.+.+-..++-...+.+|+-.. +.-.+... .++.+.. .++... + ...+-+
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~-~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE-ELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH-HHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 5688888888888888876544443233333333221 11101111 0111111 122211 1 122457
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426 236 KRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295 (604)
Q Consensus 236 ~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~ 295 (604)
..-||.++-..|++.++...+.......+..|-..=--.=..||-|+-|+|-+-=+++++
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999986556655455554443321122456999999999988777764
No 117
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.64 E-value=52 Score=25.28 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 244 LNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 244 L~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
|..+. ..|+..+. ...++..++.+=.|.=+-||+|+.+.|
T Consensus 3 l~~iv-~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIV-EKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHH-hcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45543 55655554 347889999999999999999998864
No 118
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.97 E-value=1.2e+02 Score=35.27 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhhcCC-------ccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCC------CCCCH
Q 007426 170 SDEMVNKVCQNVAGALEEK-------STQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGP------GEANS 234 (604)
Q Consensus 170 p~elv~rlc~Rv~kaL~~k-------s~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~------~ssDW 234 (604)
.+.=++.|+|+.+-.+.+. +.... -+|.++.||.+-..+-+++|...|++|.+.|+-.-- ...-|
T Consensus 233 TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhw 312 (576)
T KOG2549|consen 233 TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHW 312 (576)
T ss_pred cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchH
Confidence 4444666777766655541 11121 367888898887788899999999999999875422 24569
Q ss_pred HHHHHHHHHHHHHHhhc
Q 007426 235 QKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 235 q~RKAAAeaL~~la~~~ 251 (604)
+.|.=||..|..|.+..
T Consensus 313 aLRDfAA~ll~~i~k~f 329 (576)
T KOG2549|consen 313 ALRDFAARLLAQICKNF 329 (576)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887554
No 119
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=34.67 E-value=5e+02 Score=26.27 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=76.2
Q ss_pred CCCCCHHH-HHHHHHHHHHhhcC--CccchhhHHHHHHHHHHh-hhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426 166 WRFASDEM-VNKVCQNVAGALEE--KSTQTNSHMGLVMALAKH-NALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAI 241 (604)
Q Consensus 166 wr~Ap~el-v~rlc~Rv~kaL~~--ks~qtkAhl~LV~ALs~~-n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAA 241 (604)
|+-.++.+ ++.++|-...=|.+ .++++.|-.+.. =|.++ ++.-+-+-...|+.-+...|+ +.|-....++-
T Consensus 27 W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~-dll~~~~~~kilPvlPqLI~plk~AL~----tr~~~V~~~~L 101 (183)
T PF10274_consen 27 WKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIK-DLLERGGGEKILPVLPQLIIPLKRALN----TRDPEVFCATL 101 (183)
T ss_pred EecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHH-HHHHhcchhHHHHHHHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 65444432 34566665555554 333444444333 22233 344444455556666666666 89999999999
Q ss_pred HHHHHHHhhcC--CCchhhhHHHHHHHHH---hcc--------CCCccchhHHHHHHHHHHHHhhhcC
Q 007426 242 QMLNFLMKSLD--PRSIFSELELIIEGME---NCQ--------SDQMAYVKGASLEALQTAKRIAAEN 296 (604)
Q Consensus 242 eaL~~la~~~d--~~~L~se~~S~I~~LE---~cR--------fDKVk~VR~am~eALq~wK~Ia~~~ 296 (604)
++|+.|.++.+ +..|-.+.-.++.+|- +++ +.|-+-++|.+.|+||+-.+-.|++
T Consensus 102 ~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 102 KALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999944432 1344445555555555 444 2566889999999999987765543
No 120
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=34.27 E-value=46 Score=42.00 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCCCCChHHHHHHhhh-----cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCc-hhhHHHHHHHHHHH
Q 007426 1 MGRCLSPILRQELANL-----DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVS-GEYTISLYEVLARV 73 (604)
Q Consensus 1 mgr~lsp~~rqeL~KL-----s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~v-Rke~I~Lle~LArv 73 (604)
||-.|.| +-|-|.+| +.++-+|-.|++...-+.+.-.-++.-.++..+--- .+.+..+ |.-+..+|+.|.+.
T Consensus 807 m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~ 885 (1549)
T KOG0392|consen 807 MHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV 885 (1549)
T ss_pred hhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh
Confidence 5556666 33333333 236777777777777777755544544444443321 1222333 55678999999999
Q ss_pred hCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHh
Q 007426 74 HGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIAR 115 (604)
Q Consensus 74 HG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAr 115 (604)
-+.-+.|+++-++--+.|+++|...+ ||+|-.++.+.+-.
T Consensus 886 l~~~l~~~~~Llv~pllr~msd~~d~--vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 886 LMVGLVPYNPLLVVPLLRRMSDQIDS--VREAATKVFAKLIP 925 (1549)
T ss_pred hcccccccceeehhhhhcccccchHH--HHHHHHHHHHHHhc
Confidence 99999999999999999999999975 58988888877764
No 121
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=2.8e+02 Score=33.44 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred CCCchhhHHHHHHHHHHHhCCCCcccHHH-HHHHHHhhccCCCCChhhHHHHHHHHHHHH-hhcC-CCCCcccc--chhh
Q 007426 56 GSVSGEYTISLYEVLARVHGANIVPQIDS-IMTTITKTLASSAGSFPLQQACSRVVPAIA-RYGI-DPTTPEDK--KRHI 130 (604)
Q Consensus 56 ~s~vRke~I~Lle~LArvHG~~iaPhL~K-ImstIVRRLsDsdSS~~vR~AC~kvv~ALA-ry~i-dp~~~~~~--~~~i 130 (604)
++-||.+++.=|=+|.. |- .|+| +....++-|+|.... ||.|-++.|-.++ +|.. .+...++. +..+
T Consensus 211 D~~Vrt~A~eglL~L~e--g~----kL~~~~Y~~A~~~lsD~~e~--VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSE--GF----KLSKACYSRAVKHLSDDYED--VRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhcc--cc----cccHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 34566666655444443 22 2333 567778888999975 6999999999999 5521 12222221 2334
Q ss_pred HHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHH-HHHHHhhcCCccchhhHHHHHHHH-----HH
Q 007426 131 IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVC-QNVAGALEEKSTQTNSHMGLVMAL-----AK 204 (604)
Q Consensus 131 i~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc-~Rv~kaL~~ks~qtkAhl~LV~AL-----s~ 204 (604)
|..+|.-+.|- +=+--|++.=||- +-. -++++++++.+ .++..-|..+-+.-|.-=.+..+. =+
T Consensus 283 F~~vC~~v~D~--sl~VRV~AaK~lG-----~~~---~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 283 FSSVCRAVRDR--SLSVRVEAAKALG-----EFE---QVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred HHHHHHHHhcC--ceeeeehHHHHhc-----hHH---HhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 55555544431 1111233322221 111 25788877744 345554554443333111122111 00
Q ss_pred hhhhH----HHHhHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426 205 HNALI----VEAYARLLIQSGL-RILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK 279 (604)
Q Consensus 205 ~n~~i----iea~g~~Ll~S~l-~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR 279 (604)
-|+.+ ......++|++|- ..|-.++..+=.-.|+||-..|++|+.+. +. |..+++..|-.-=.|-|..||
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC----cHHHHHHHHHHHhccHHHHHH
Confidence 01111 1111223444332 22223333445568999999999998544 32 566777777777788888888
Q ss_pred HHHHHHHH
Q 007426 280 GASLEALQ 287 (604)
Q Consensus 280 ~am~eALq 287 (604)
--+..||.
T Consensus 428 L~ai~aL~ 435 (823)
T KOG2259|consen 428 LKAIFALT 435 (823)
T ss_pred HHHHHHHH
Confidence 76555553
No 122
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.11 E-value=6.1e+02 Score=29.08 Aligned_cols=254 Identities=19% Similarity=0.220 Sum_probs=142.0
Q ss_pred CCChHHHHHHhhhcCCchhHHHHHHHHHHHH------hhc-CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHH--HHh
Q 007426 4 CLSPILRQELANLDKDADSRKSAMKALKSYV------KDL-DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLA--RVH 74 (604)
Q Consensus 4 ~lsp~~rqeL~KLs~DRDT~~iA~~eLesia------k~L-d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LA--rvH 74 (604)
-|-|+.| |+|-- |--.++-|...|-.+. +.| .+.++|...+-+..++. .|+.||-.-++.+| +.|
T Consensus 168 aL~pltr--Laksk-dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~---dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 168 ALEPLTR--LAKSK-DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL---DVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred chhhhHh--hcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh---hHHHHHHHHhhhhhhhHHH
Confidence 3668887 88876 7778888888886664 334 67889988887765543 47888766666544 677
Q ss_pred CCCCcccHHHHHHHHHhhccCCCCChhhHHHHH--HHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc--chhh
Q 007426 75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACS--RVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ--ESLT 150 (604)
Q Consensus 75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~--kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq--e~vQ 150 (604)
.+.++--=||+|..+|--+.|++. +.-|- -+.+-||. .++--.+|+.+=--|+.=-|. |. -+.-
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~----kvkcqA~lALrnlas-------dt~Yq~eiv~ag~lP~lv~Ll-qs~~~pli 309 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSD----KVKCQAGLALRNLAS-------DTEYQREIVEAGSLPLLVELL-QSPMGPLI 309 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCCh----HHHHHHHHHHhhhcc-------cchhhhHHHhcCCchHHHHHH-hCcchhHH
Confidence 778888889999999998888774 33342 23333331 111122333333334433333 22 2344
Q ss_pred HHHHHHHHH--HhccCCCCCCCHHHHHHHHHHHHHhhcCCc--cchhh-HHHHHHHHHHhhhh-HHHHhHHHHHHHHHHH
Q 007426 151 AGAALCLKA--LVDSDNWRFASDEMVNKVCQNVAGALEEKS--TQTNS-HMGLVMALAKHNAL-IVEAYARLLIQSGLRI 224 (604)
Q Consensus 151 sGAALCLAA--lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks--~qtkA-hl~LV~ALs~~n~~-iiea~g~~Ll~S~l~~ 224 (604)
..+-.|+-- .-+-+.---+ +.=+-|=+.|+..+=.+.- +-+.. +-.|+++ +.+|.. +.+.++ ++-..+.
T Consensus 310 lasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas-se~n~~~i~esgA---i~kl~eL 384 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS-SEHNVSVIRESGA---IPKLIEL 384 (550)
T ss_pred HHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh-hhhhhHHHhhcCc---hHHHHHH
Confidence 555667722 2121110000 0111122333433333322 22222 3444443 677744 444444 4445555
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHH
Q 007426 225 LNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 225 L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
|-++ .-..|.|.+|+-+.-.+. -.++. . +. ..+|.+|=---||.-..||+-+.+||
T Consensus 385 ~lD~--pvsvqseisac~a~Lal~-d~~k~--~-lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 385 LLDG--PVSVQSEISACIAQLALN-DNDKE--A-LLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred HhcC--ChhHHHHHHHHHHHHHhc-cccHH--H-HhhcCCcceeecccCccchhhcccHHHHH
Confidence 5544 446799999887766543 22221 1 22 34777777777888888998888776
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.54 E-value=94 Score=32.30 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=44.3
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 224 ILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 224 ~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
.|+..+.++|++.|.-|.+.|..++..+.++.|...--..|-.|=.-|+|-.+-|..+ .+++
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl 64 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGL 64 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHH
Confidence 3555566899999999999999999999877777654444444444566666666666 4444
No 124
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.42 E-value=4.7e+02 Score=25.17 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426 83 DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD 162 (604)
Q Consensus 83 ~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE 162 (604)
|.++..+.+.|+-.. |..+|..+.+++|.|. ..||-... .+.+=+ + +.. .+-..+-|-....-
T Consensus 9 P~LL~~L~~iLk~e~-s~~iR~E~lr~lGilG--ALDP~~~k--------~~~~~~-~---~~~--~~~~~~~~~~~~l~ 71 (160)
T PF11865_consen 9 PELLDILLNILKTEQ-SQSIRREALRVLGILG--ALDPYKHK--------SIQKSL-D---SKS--SENSNDESTDISLP 71 (160)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHhhhcc--ccCcHHHh--------cccccC-C---ccc--cccccccchhhHHh
Confidence 344455555554343 2458999999999998 66774421 000000 0 000 00011111111111
Q ss_pred cCCCCCCCHHHHHH-HHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007426 163 SDNWRFASDEMVNK-VCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLL 239 (604)
Q Consensus 163 s~nwr~Ap~elv~r-lc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKA 239 (604)
..+....++|.... +...+.+.|++++-..- +-+..++-..+.-+.-.-+|...+++..+..+.. .+-..|..
T Consensus 72 ~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~----~~~~~~e~ 147 (160)
T PF11865_consen 72 MMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT----CPDSLREF 147 (160)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh----CCHHHHHH
Confidence 11222235555544 34447778888765443 2333333333334444467888888998888883 33366666
Q ss_pred HHHHHHHHHh
Q 007426 240 AIQMLNFLMK 249 (604)
Q Consensus 240 AAeaL~~la~ 249 (604)
--+-|..|..
T Consensus 148 ~~~qL~~lv~ 157 (160)
T PF11865_consen 148 YFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 125
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.12 E-value=3.4e+02 Score=24.59 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccC-C-----CccchhHHHHHHHHHH
Q 007426 218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQS-D-----QMAYVKGASLEALQTA 289 (604)
Q Consensus 218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRf-D-----KVk~VR~am~eALq~w 289 (604)
+..+...|.. .+..+|....=|-..|..|+.....+.+.... ...|+.|.+.++ | +-..||+.+.+-+++-
T Consensus 41 ~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 41 MDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 4455555511 24789999999999999999888766555443 457777777765 3 3345999888887763
No 126
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.49 E-value=2.7e+02 Score=28.96 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=85.1
Q ss_pred hcCCchhHHHHHHHHHHHHh-----hc--CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC--CcccHHHHH
Q 007426 16 LDKDADSRKSAMKALKSYVK-----DL--DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN--IVPQIDSIM 86 (604)
Q Consensus 16 Ls~DRDT~~iA~~eLesiak-----~L--d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~--iaPhL~KIm 86 (604)
+.+|+..+..|+-.|-..+- ++ +...+|...+-+.+++ +.+|+.++..+.-+|....+. |--|+++++
T Consensus 23 ~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~---~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc 99 (254)
T PF04826_consen 23 STEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN---PSVREKALNALNNLSVNDENQEQIKMYIPQVC 99 (254)
T ss_pred cCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC---hHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 35688899998877755432 11 5667888888887644 458999999998887776544 566777776
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426 87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD 162 (604)
Q Consensus 87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE 162 (604)
..++-. ..+| .+|.|.-+...-|+ ++ ++..+++...+.-|+..|...++.++.=+--+|.-+-+
T Consensus 100 ~~~~s~--~lns--~~Q~agLrlL~nLt--v~------~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 100 EETVSS--PLNS--EVQLAGLRLLTNLT--VT------NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHhcC--CCCC--HHHHHHHHHHHccC--CC------cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 665442 2243 26877777777776 22 22345555666677777777777766544444444433
No 127
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.89 E-value=1.2e+02 Score=31.64 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHhhcCCCChhH--------HHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426 12 ELANLDKDADSRKSAMKALKSYVKDLDSKAIPL--------FLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID 83 (604)
Q Consensus 12 eL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~--------FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~ 83 (604)
-+.||. +.|.....++.|+.++.+++....+. |+.+++.+.- ...+|++|+.++..+...++..+ -.
T Consensus 169 vyskl~-~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-~~~vR~~A~~~l~~l~~~~~~~l---~~ 243 (339)
T PF12074_consen 169 VYSKLA-SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-SWKVRRAALSALKKLYASNPELL---SK 243 (339)
T ss_pred HHhccC-CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhChHHH---HH
Confidence 456777 89999999999999999887644433 6777775532 24699999999999998887662 22
Q ss_pred HHHHHHHhhcc
Q 007426 84 SIMTTITKTLA 94 (604)
Q Consensus 84 KImstIVRRLs 94 (604)
.|+..+-..|.
T Consensus 244 ~li~~l~~~l~ 254 (339)
T PF12074_consen 244 SLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=9.1e+02 Score=29.76 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhhccCCCCChh-hHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc-cc-chhhHHHHHH
Q 007426 80 PQIDSIMTTITKTLASSAGSFP-LQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG-SQ-ESLTAGAALC 156 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS~~-vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~-qq-e~vQsGAALC 156 (604)
-.+.-|+-+|-+-|.+.+.-+. +---|+..||..-.. -+|+-=+---|.. .. ..|---||||
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~---------------ea~~~DI~KlLvS~~~~~~vkqkaALc 171 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMA---------------EAFADDIPKLLVSGSSMDYVKQKAALC 171 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHH---------------HHhhhhhHHHHhCCcchHHHHHHHHHH
Confidence 3456677788888888875332 223565555543311 1222222222322 22 4576779999
Q ss_pred HHHHhccCCCCCCCHHHHH--HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh
Q 007426 157 LKALVDSDNWRFASDEMVN--KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL 208 (604)
Q Consensus 157 LAAlVEs~nwr~Ap~elv~--rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~ 208 (604)
|-++.-++ +++++ +-..||.-+|++.+..-. |-..|+-+|++-|+.
T Consensus 172 lL~L~r~s------pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 172 LLRLFRKS------PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HHHHHhcC------ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 99999974 33333 467788889999875544 667777777777653
No 129
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.81 E-value=1.5e+03 Score=29.24 Aligned_cols=197 Identities=19% Similarity=0.199 Sum_probs=106.2
Q ss_pred ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 41 AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 41 tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
++-.|..+|. ..++..+|.+..|..|+.|=|.|+-..--+- -++|-.|.= ++-.. ...+|-+-..+++++ +.
T Consensus 94 ~~~~l~~~~~-~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~-~~~h~-~pkvRk~a~~~i~~V---L~ 167 (1176)
T KOG1248|consen 94 TLNILAPFLT-AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILA-FAAHK-KPKVRKAAQRGIAAV---LK 167 (1176)
T ss_pred HHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHH-HHhcC-chHHHHHHHHHHHHH---Hc
Confidence 3334444554 3445557999999999999999986633311 111111111 11111 223777766666554 34
Q ss_pred CCCCccccchhh----HHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-
Q 007426 119 DPTTPEDKKRHI----IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN- 193 (604)
Q Consensus 119 dp~~~~~~~~~i----i~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk- 193 (604)
+|++.-+.. ++ +.-||=-+++......+...-==-|||-+-+=.. | |.+++..||--..+.+...+...+
T Consensus 168 ~p~~~~~~~-HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~-~---p~~li~sl~e~lL~i~~~s~v~v~~ 242 (1176)
T KOG1248|consen 168 GPPFAPDAE-HPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLST-F---PRPLIKSLCEVLLNITTESPVLVLL 242 (1176)
T ss_pred CCCCCcccc-chHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcc-C---CHHHHHHHHHHHHhhcccchHHHHH
Confidence 544432221 33 3335655666655544333333458888877774 7 777777766654444444333222
Q ss_pred hHHHHHHHHH--------------------Hh----hhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHh
Q 007426 194 SHMGLVMALA--------------------KH----NALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMK 249 (604)
Q Consensus 194 Ahl~LV~ALs--------------------~~----n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~ 249 (604)
.-|+..-+|. +. |...+-.+--..+.-|+.+|- .-+|-+-+.|+-.+-.++.
T Consensus 243 ~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la----~~q~~~~~~~~~~~~~~~~ 318 (1176)
T KOG1248|consen 243 EVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILA----TLQEEKALQALPRLFSLFF 318 (1176)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH----HhCHHHHHHhhhhhhhHHH
Confidence 1222222222 11 222333333346677778887 7899888888877777665
Q ss_pred hcC
Q 007426 250 SLD 252 (604)
Q Consensus 250 ~~d 252 (604)
...
T Consensus 319 t~~ 321 (1176)
T KOG1248|consen 319 TIL 321 (1176)
T ss_pred HHH
Confidence 443
No 130
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=26.79 E-value=70 Score=30.67 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHhhhc------CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC
Q 007426 2 GRCLSPILRQELANLD------KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET 52 (604)
Q Consensus 2 gr~lsp~~rqeL~KLs------~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt 52 (604)
+||++|.+.+.|.+.+ ||+++|+ +||-.. ..|++|..|.+.
T Consensus 19 ~~~f~p~~i~~L~~~d~~~tSKKd~~~Rr---~ELl~~-------~sp~Ll~~i~~~ 65 (148)
T PF08144_consen 19 PRYFSPEIIKLLKEGDRNATSKKDPEVRR---KELLEA-------ISPPLLEAIAEN 65 (148)
T ss_pred cccCCHHHHHHHhhhcccccccCCHHHHH---HHHHHH-------hhHHHHHHHHHh
Confidence 6899999999999887 7888887 344443 348899888743
No 131
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.32 E-value=2.8e+02 Score=38.80 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=69.0
Q ss_pred HHhhc--cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426 89 ITKTL--ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW 166 (604)
Q Consensus 89 IVRRL--sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw 166 (604)
|.|.+ +...+++++|.+|.+..++.-. ..|-.++. -.+.-.-+.-++|.+|.....-++.+|.+||.....-+-
T Consensus 1234 i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~-~~d~~~~~--~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~- 1309 (3550)
T KOG0889|consen 1234 IQKTSDYKNSSSLVRLRVACIKLLAACMK-LSDFRTPQ--HAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDV- 1309 (3550)
T ss_pred hhcccccccccccccchhHHHHHHHHHHh-cccccchh--hhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-
Confidence 55554 5555677899999999877543 33311111 011122355688889999998999999999998877532
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHH
Q 007426 167 RFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIV 210 (604)
Q Consensus 167 r~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~ii 210 (604)
.-|.|.+|....=+.-+|.+-.. ..+.+.-.|+...++.+
T Consensus 1310 -~~~ke~lq~~lrplL~~l~d~~~---lsv~~l~~ls~l~~ll~ 1349 (3550)
T KOG0889|consen 1310 -KLPKELLQSHLRPLLMNLSDHNN---LSVPGLEGLSRLLRLLI 1349 (3550)
T ss_pred -cccHHHHHhhHHHHHHhhhHhhh---hhHHHHHHHHHHHHHHH
Confidence 46788888766545555553222 22333334445544443
No 132
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.70 E-value=9.9e+02 Score=26.88 Aligned_cols=222 Identities=18% Similarity=0.177 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHH-HHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHH
Q 007426 26 AMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTIS-LYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQ 104 (604)
Q Consensus 26 A~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~-Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~ 104 (604)
.+..|-+..+.++.+.|-.++.++.. .. ...-. ++..|+.+.-. |.+ ..|...+....=+ -.
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~------~~~r~~~~Dal~~~GT~---~a~----~~i~~~i~~~~~~---~~ 374 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK------KKARRIFLDAVAQAGTP---PAL----KFIKQWIKNKKIT---PL 374 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC------HHHHHHHHHHHHhcCCH---HHH----HHHHHHHHcCCCC---HH
Confidence 45556666666666666666666653 11 11112 23334444322 122 2222222222200 13
Q ss_pred HHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc----ccchhhHHHHHHHHHHhccCCC--CCCCHHHHHHHH
Q 007426 105 ACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG----SQESLTAGAALCLKALVDSDNW--RFASDEMVNKVC 178 (604)
Q Consensus 105 AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~----qqe~vQsGAALCLAAlVEs~nw--r~Ap~elv~rlc 178 (604)
-.+.++..+...+..|+- .+++=|++-+-. ++..+-.+|-|+++.+|--..- ...+...+.++.
T Consensus 375 ea~~~~~~~~~~~~~Pt~----------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~ 444 (574)
T smart00638 375 EAAQLLAVLPHTARYPTE----------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELL 444 (574)
T ss_pred HHHHHHHHHHHhhhcCCH----------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 456666666655554432 233333333322 2235778888888888863221 111244455555
Q ss_pred HHHHHhhcC---CccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCc
Q 007426 179 QNVAGALEE---KSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRS 255 (604)
Q Consensus 179 ~Rv~kaL~~---ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~ 255 (604)
+.+...|++ .....+ -+..+-||.-++ -...+.....+|. +-..-+--.|.+|+++|..++... ++.
T Consensus 445 ~~l~~~l~~~~~~~~~~~-~~~~LkaLGN~g-------~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~ 514 (574)
T smart00638 445 KYLHELLQQAVSKGDEEE-IQLYLKALGNAG-------HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRK 514 (574)
T ss_pred HHHHHHHHHHHhcCCchh-eeeHHHhhhccC-------ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chH
Confidence 555555543 111111 123333444333 1122344445554 223445679999999999887433 332
Q ss_pred hhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 256 IFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 256 L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
+ ..-.+.++.+.. .=..||-+|+-+|-..
T Consensus 515 v---~~~l~~i~~n~~--e~~EvRiaA~~~lm~t 543 (574)
T smart00638 515 V---QEVLLPIYLNRA--EPPEVRMAAVLVLMET 543 (574)
T ss_pred H---HHHHHHHHcCCC--CChHHHHHHHHHHHhc
Confidence 2 355667775555 4467999998887543
No 133
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=25.54 E-value=31 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=21.5
Q ss_pred chhhhHHHHHHHHHHHHhheeeccCC
Q 007426 572 FKLVFGLFFILVAIFTSLFLIDGQEN 597 (604)
Q Consensus 572 ~~~~~~~~~~~~a~~~~~~~~~~~d~ 597 (604)
+.|+.|.++++++|...|+||-..|-
T Consensus 10 ~SL~~Ga~ivvipi~~aLifvSq~D~ 35 (39)
T CHL00114 10 NSLLLGAIIVVIPITLALLFVSQKDR 35 (39)
T ss_pred HHHHHHHHHhHHHhhhheEEEeccce
Confidence 56888989999999999999976663
No 134
>PF14910 MMS22L_N: S-phase genomic integrity recombination mediator, N-terminal
Probab=25.40 E-value=6.2e+02 Score=30.59 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=79.5
Q ss_pred HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcC---Cccc-------hhhHHHHHHH
Q 007426 132 HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEE---KSTQ-------TNSHMGLVMA 201 (604)
Q Consensus 132 ~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~---ks~q-------tkAhl~LV~A 201 (604)
.-|-+.=.+.|.+.-=.+=+-.=||||..+| +.+|++|+..+|.- ++.- .|+||.+..-
T Consensus 487 SKF~~kKm~ELtE~GL~Nf~~LFLtLa~~ad-----------~eDvasr~~dlL~~L~~~~~~~~~r~LIwkG~mAlLLl 555 (704)
T PF14910_consen 487 SKFSQKKMEELTEVGLYNFISLFLTLASVAD-----------FEDVASRVLDLLNFLPLPSLPTSRRILIWKGHMALLLL 555 (704)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHH
Confidence 3333344444444433344455688877766 45666666666653 1111 2378888877
Q ss_pred HHHhhhhHHHHhHHHHHHHHHHHhcC-CCCCCC-------HHHHHHHHHHHHHHHhhcCCCchhhhH---HHHHHHHHhc
Q 007426 202 LAKHNALIVEAYARLLIQSGLRILNA-GPGEAN-------SQKRLLAIQMLNFLMKSLDPRSIFSEL---ELIIEGMENC 270 (604)
Q Consensus 202 Ls~~n~~iiea~g~~Ll~S~l~~L~~-~~~ssD-------Wq~RKAAAeaL~~la~~~d~~~L~se~---~S~I~~LE~c 270 (604)
-++-|-.+ +++...++.+..++..+ ..|. | |..-.--++.++.|....+.=.+++++ ...-..|++|
T Consensus 556 ~~er~lDi-~~~a~kl~~~f~~~a~ef~~K~-d~~~~~~lw~llsiyidgvqeVfe~S~~l~lsEekLL~~~f~~yL~~C 633 (704)
T PF14910_consen 556 YVERNLDI-GSLAEKLSESFNEIAKEFLSKN-DPSRRQALWTLLSIYIDGVQEVFETSCNLNLSEEKLLGPWFSMYLPAC 633 (704)
T ss_pred HHHhCCCH-HHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHccHHHHHHHHHC
Confidence 77777666 77777777775544443 1233 4 344444445555554444322355544 4566889999
Q ss_pred cCCCccchhHHHHHHHHHHHHh
Q 007426 271 QSDQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 271 RfDKVk~VR~am~eALq~wK~I 292 (604)
|--.+--|=......++--+.+
T Consensus 634 ~~~el~~vL~fLq~vl~rLR~~ 655 (704)
T PF14910_consen 634 RESELRTVLNFLQAVLARLRSV 655 (704)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 9655444443333333333333
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.03 E-value=1.5e+02 Score=36.58 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=76.2
Q ss_pred CChHHHHHHhhhcCCchhHHHHHHHHHHHHhh---c---CCCC-hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC-C
Q 007426 5 LSPILRQELANLDKDADSRKSAMKALKSYVKD---L---DSKA-IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG-A 76 (604)
Q Consensus 5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~---L---d~dt-lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG-~ 76 (604)
|=|++-|.|.-. |.+.|-.+.+-|.-.... | ..+| +|.||+==.+.+..--.||.-+|..|+.|.|+-+ +
T Consensus 910 LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 910 LLPLLLQALSMP--DVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred HHHHHHHhcCCC--ccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 347778887654 466655555555444332 2 1233 6666664443333224789999999999999555 6
Q ss_pred CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426 77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry 116 (604)
.+-|+-++.+.+|++-|.|+-= .||--|+++=..+..-
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKR--LVRKEAVDTRQNWYML 1025 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHH--HHHHHHHHHhhhhhhc
Confidence 7999999999999999999972 3899999998877644
No 136
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.86 E-value=2.3e+02 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
|+..+++|. +.|-..|+.|+-+|..|+
T Consensus 14 i~~Lv~ll~----~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLK----SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTT----SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHh
Confidence 677788888 789999999999999875
No 137
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.51 E-value=1e+03 Score=26.54 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426 88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL 160 (604)
Q Consensus 88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl 160 (604)
.+++-|.|++- .||.+=+.++|.|-+ ...+.+|..+|.+.+..|..+|+-.|..+
T Consensus 151 ~L~~~L~d~d~--~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 151 ALEAALTHEDA--LVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHhcCCCH--HHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 34444556653 356555555554431 12445577888888888988888887554
No 138
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=4.2e+02 Score=32.48 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=97.6
Q ss_pred HHHhhc-----cCCCCChhhHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHh
Q 007426 88 TITKTL-----ASSAGSFPLQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALV 161 (604)
Q Consensus 88 tIVRRL-----sDsdSS~~vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlV 161 (604)
.+|||| +|++ -.||.| +|.||. -+..||.. ..+.+.||+|. -|-+|-.|||+.|--+-
T Consensus 554 kair~lLh~aVsD~n--DDVrRa---AVialGFVl~~dp~~--------~~s~V~lLses---~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVN--DDVRRA---AVIALGFVLFRDPEQ--------LPSTVSLLSES---YNPHVRYGAAMALGIAC 617 (929)
T ss_pred hhHHHhhcccccccc--hHHHHH---HHHHheeeEecChhh--------chHHHHHHhhh---cChhhhhhHHHHHhhhh
Confidence 356666 4544 345655 445555 44567755 46778888875 46789999999887655
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426 162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL 238 (604)
Q Consensus 162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK 238 (604)
-.+. ++.|-.+...|-....-++ |.+++.+-+.|++....+.+.. +.+-..+.+.+ |.+|-....
T Consensus 618 AGtG---------~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~-frk~l~kvI~d--KhEd~~aK~ 685 (929)
T KOG2062|consen 618 AGTG---------LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNG-FRKQLEKVIND--KHEDGMAKF 685 (929)
T ss_pred cCCC---------cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHH-HHHHHHHHhhh--hhhHHHHHH
Confidence 4432 2334444444444434443 8999999999999877665543 23334444442 567777777
Q ss_pred HHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHH
Q 007426 239 LAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAK 290 (604)
Q Consensus 239 AAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK 290 (604)
-|+-+=.- +-.- ++-+. |...-.-..+||+.|=+.|. =+|.|=
T Consensus 686 GAilAqGi-ldaG-GrNvt------islqs~tg~~~~~~vvGl~~-Flq~Wy 728 (929)
T KOG2062|consen 686 GAILAQGI-LDAG-GRNVT------ISLQSMTGHTKLDAVVGLVV-FLQYWY 728 (929)
T ss_pred HHHHHhhh-hhcC-CceEE------EEEeccCCCCchHHHHHHHH-HHHHHH
Confidence 76655333 3222 23332 33333445788887776553 467775
No 139
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=21.77 E-value=73 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=20.3
Q ss_pred chhhhHHHHHHHHHHHHhheeeccCC
Q 007426 572 FKLVFGLFFILVAIFTSLFLIDGQEN 597 (604)
Q Consensus 572 ~~~~~~~~~~~~a~~~~~~~~~~~d~ 597 (604)
|..++|+.++++..+...+|++.+|+
T Consensus 4 faWilG~~lA~~~~v~~a~w~E~~e~ 29 (30)
T TIGR02106 4 FAWILGTLLACAFGVLNAMWLELREA 29 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45678887777777777899998876
No 140
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=21.51 E-value=4.6e+02 Score=29.57 Aligned_cols=158 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC------------CCCHHH
Q 007426 106 CSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR------------FASDEM 173 (604)
Q Consensus 106 C~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr------------~Ap~el 173 (604)
...++..|...+..|+- +++..|..=+-..-...+..+...|.|+++.+|-...-. .....+
T Consensus 414 a~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~ 487 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY 487 (618)
T ss_dssp HHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred HHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHhh-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426 174 VNKVCQNVAGALEEKSTQTNSHMGLVMALAKHN-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD 252 (604)
Q Consensus 174 v~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d 252 (604)
+..+-..+..+........+ +..+-||.-++ +.+ +...+.++.... .-+--.|.+|+++|..++...
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~--~~~LkaLgN~g~~~~--------i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~- 555 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEK--IVYLKALGNLGHPES--------IPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHC- 555 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHH--HHHHHHHHHHT-GGG--------HHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT--
T ss_pred HHHHHHHHHHHhhccCHHHH--HHHHHHhhccCCchh--------hHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcC-
Q ss_pred CCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 253 PRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 253 ~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
-..-..-.+.++.+...| ..||-||+.+|
T Consensus 556 ---~~~v~~~l~~I~~n~~e~--~EvRiaA~~~l 584 (618)
T PF01347_consen 556 ---PEKVREILLPIFMNTTED--PEVRIAAYLIL 584 (618)
T ss_dssp ---HHHHHHHHHHHHH-TTS---HHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
No 141
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=21.03 E-value=82 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.463 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 007426 82 IDSIMTTITKTLASSAGSFPLQQACSRVVP 111 (604)
Q Consensus 82 L~KImstIVRRLsDsdSS~~vR~AC~kvv~ 111 (604)
+-+.||+|||+|.=-=|-.+++-||+|-+.
T Consensus 28 vR~lIShVirtLkmDCse~~vqlaCAKLIS 57 (154)
T PF14914_consen 28 VRRLISHVIRTLKMDCSEPHVQLACAKLIS 57 (154)
T ss_pred HHHHHHHHHHHHHhhcCCCcccHHHHHHHH
Confidence 458999999999222222247999999754
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.84 E-value=7.2e+02 Score=33.12 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC-----------------CCCccccchhh-----HH
Q 007426 75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGID-----------------PTTPEDKKRHI-----IH 132 (604)
Q Consensus 75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id-----------------p~~~~~~~~~i-----i~ 132 (604)
|+.|.+-|.||++.--.| +.+. ++.||-.|...|-..-.. |.-..+++..+ -.
T Consensus 11 ~~~~~~ale~i~~~k~~r-k~~~----l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1780)
T PLN03076 11 GKVVSPALEKIIKNASWR-KHSK----LAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESE 85 (1780)
T ss_pred hHHHHHHHHHHHhhHHhh-ccHH----HHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHH
Q ss_pred hhhchhHHhhhcccchhhHHHHHHHHHHhccCCC-------CCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHh
Q 007426 133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW-------RFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKH 205 (604)
Q Consensus 133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw-------r~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~ 205 (604)
.++.||--|.-..+-.++.=|==||+++|.-..- ..+...++.++---|+.-. ..+--.-.|.++-+|...
T Consensus 86 ~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~--~~~de~iqLqilk~Ll~~ 163 (1780)
T PLN03076 86 LILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCH--DLGDEGIELLVLKTLLSA 163 (1780)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhc--cCCchHHHHHHHHHHHHH
Q ss_pred hhhH-HHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 206 NALI-VEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 206 n~~i-iea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
.-.- +..+|+.|++....|-+--+.+-+-..-.-|--+|.-+...+
T Consensus 164 v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~V 210 (1780)
T PLN03076 164 VTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIV 210 (1780)
T ss_pred HcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHH
No 143
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=4.8e+02 Score=32.04 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 216 LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 216 ~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
..+.+.++.|.+ +.|.-.|-+||-+|.- + +.+ +....||..||.-=.|++-+||..+.=|+
T Consensus 588 ~~~~s~V~lLse---s~N~HVRyGaA~ALGI-a-CAG-----tG~~eAi~lLepl~~D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 588 EQLPSTVSLLSE---SYNPHVRYGAAMALGI-A-CAG-----TGLKEAINLLEPLTSDPVDFVRQGALIAL 648 (929)
T ss_pred hhchHHHHHHhh---hcChhhhhhHHHHHhh-h-hcC-----CCcHHHHHHHhhhhcChHHHHHHHHHHHH
Confidence 367888899987 7899999999999886 3 443 35678999999999999999999887665
No 144
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=20.00 E-value=8.9e+02 Score=24.24 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=79.1
Q ss_pred CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCC
Q 007426 19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAG 98 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdS 98 (604)
+.--|..|+.-|..+.++ .-+||++..+.+.+...=-..+..|=..+.++|- +++..|.....
T Consensus 53 ~~kvR~aA~~~l~~lL~g-----sk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~------------~Ll~~L~~E~~ 115 (182)
T PF13251_consen 53 SPKVRAAAASALAALLEG-----SKPFLAQAEESKGPSGSFTSLSSTLASMIMELHR------------GLLLALQAEKS 115 (182)
T ss_pred chhHHHHHHHHHHHHHHc-----cHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH------------HHHHHHhcccc
Confidence 444577888899999885 4789999998874432223455666666666662 33333433322
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccC
Q 007426 99 SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSD 164 (604)
Q Consensus 99 S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~ 164 (604)
.++-..|-|..++|....- +.-=..+.+..+++.+.--+.+..-.++..+.+||.+++-..
T Consensus 116 -~~~l~q~lK~la~Lv~~tP----Y~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 116 -PPVLTQLLKCLAVLVQATP----YHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred -cHHHHHHHHHHHHHHccCC----hhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2356688899888885421 111223455666665555555655678999999999999864
Done!