Query 007426
Match_columns 604
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 01:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.3 1.4E-11 4.9E-16 115.4 13.3 191 44-257 19-213 (242)
2 4fdd_A Transportin-1; heat rep 99.0 1.5E-09 5E-14 118.5 14.8 259 19-292 187-472 (852)
3 1u6g_C TIP120 protein, CAND1; 99.0 2.3E-09 7.7E-14 121.4 16.8 271 8-295 7-288 (1230)
4 2bpt_A Importin beta-1 subunit 99.0 2.8E-08 9.7E-13 105.8 23.5 252 19-287 424-707 (861)
5 2qk1_A Protein STU2; STU2P, XM 99.0 1.1E-08 3.7E-13 99.1 16.3 204 44-261 20-232 (249)
6 1b3u_A Protein (protein phosph 99.0 9.4E-09 3.2E-13 104.2 16.3 245 19-289 255-507 (588)
7 1b3u_A Protein (protein phosph 99.0 4.2E-08 1.4E-12 99.5 20.1 219 42-288 365-584 (588)
8 1u6g_C TIP120 protein, CAND1; 98.9 1.3E-08 4.4E-13 115.3 18.0 263 9-287 88-399 (1230)
9 2bpt_A Importin beta-1 subunit 98.9 9E-08 3.1E-12 102.0 21.0 261 20-289 514-809 (861)
10 4fdd_A Transportin-1; heat rep 98.9 2.4E-08 8.3E-13 108.9 15.7 256 23-288 338-655 (852)
11 1qgr_A Protein (importin beta 98.9 8.2E-08 2.8E-12 102.5 18.9 263 20-294 188-482 (876)
12 1qgr_A Protein (importin beta 98.8 2.7E-07 9.3E-12 98.5 20.2 259 22-294 580-874 (876)
13 1ibr_B P95, importin beta-1 su 98.7 6.5E-07 2.2E-11 88.0 17.5 254 24-288 107-392 (462)
14 1ibr_B P95, importin beta-1 su 98.7 3.7E-07 1.3E-11 89.7 15.7 238 20-268 188-457 (462)
15 2jdq_A Importin alpha-1 subuni 98.7 9.1E-07 3.1E-11 87.2 17.8 253 19-291 120-390 (450)
16 2qk2_A LP04448P; mini spindles 98.6 8E-07 2.8E-11 83.2 15.4 170 5-190 16-190 (242)
17 1wa5_B Importin alpha subunit; 98.5 2.3E-06 8E-11 88.3 18.0 263 8-293 177-459 (530)
18 4b8j_A Importin subunit alpha- 98.3 1.4E-05 4.7E-10 82.1 17.8 252 19-290 173-442 (528)
19 3ltm_A Alpha-REP4; protein eng 98.3 4.2E-06 1.4E-10 75.7 10.8 187 38-291 17-203 (211)
20 2jdq_A Importin alpha-1 subuni 98.3 9.4E-06 3.2E-10 80.0 14.1 248 19-287 78-343 (450)
21 1wa5_B Importin alpha subunit; 98.3 7E-06 2.4E-10 84.7 13.7 243 19-288 144-409 (530)
22 4hxt_A De novo protein OR329; 98.2 3.3E-05 1.1E-09 69.8 14.8 211 19-251 15-243 (252)
23 3ltj_A Alpharep-4; protein eng 98.2 5.7E-06 2E-10 74.3 9.5 186 36-288 10-195 (201)
24 4b8j_A Importin subunit alpha- 98.1 3.9E-05 1.3E-09 78.8 16.0 243 20-288 132-397 (528)
25 4hxt_A De novo protein OR329; 98.1 3.2E-05 1.1E-09 70.0 13.4 231 40-288 2-238 (252)
26 4db8_A Armadillo-repeat protei 98.1 1.8E-05 6.2E-10 72.7 11.6 208 19-248 25-250 (252)
27 3ltm_A Alpha-REP4; protein eng 98.1 2.5E-05 8.4E-10 70.7 11.8 173 17-248 30-202 (211)
28 1oyz_A Hypothetical protein YI 98.1 0.00011 3.8E-09 69.2 16.0 212 18-288 35-247 (280)
29 2vgl_B AP-2 complex subunit be 98.1 8.4E-05 2.9E-09 79.2 16.7 260 7-295 124-420 (591)
30 4ffb_C Protein STU2; tubulin f 98.0 0.00014 4.7E-09 70.0 16.3 221 38-276 8-245 (278)
31 2qk1_A Protein STU2; STU2P, XM 98.0 8.2E-05 2.8E-09 72.0 14.7 205 77-295 12-224 (249)
32 3ltj_A Alpharep-4; protein eng 97.9 6.8E-05 2.3E-09 67.3 11.5 170 19-247 27-196 (201)
33 4db8_A Armadillo-repeat protei 97.9 0.00035 1.2E-08 64.1 15.0 230 39-287 11-247 (252)
34 3tpo_A Importin subunit alpha- 97.8 0.0025 8.6E-08 66.6 22.0 253 19-289 175-447 (529)
35 3ul1_B Importin subunit alpha- 97.7 0.0017 5.8E-08 67.9 18.4 251 18-288 155-427 (510)
36 4db6_A Armadillo repeat protei 97.6 0.00055 1.9E-08 61.3 12.1 190 39-248 10-208 (210)
37 3ul1_B Importin subunit alpha- 97.6 0.0019 6.6E-08 67.5 17.8 251 9-287 105-383 (510)
38 3tpo_A Importin subunit alpha- 97.6 0.0013 4.4E-08 68.8 16.4 248 8-286 123-401 (529)
39 1oyz_A Hypothetical protein YI 97.5 0.0046 1.6E-07 58.2 16.8 197 38-288 21-218 (280)
40 4db6_A Armadillo repeat protei 97.4 0.0048 1.6E-07 55.1 15.7 185 89-288 17-206 (210)
41 1w63_A Adapter-related protein 97.4 0.00061 2.1E-08 73.4 11.3 247 5-288 143-411 (618)
42 2vgl_B AP-2 complex subunit be 97.4 0.0074 2.5E-07 64.3 19.2 263 1-289 43-309 (591)
43 1wa5_C Importin alpha RE-expor 97.4 0.0044 1.5E-07 69.4 18.1 246 19-273 373-656 (960)
44 1xqr_A HSPBP1 protein; armadil 97.4 0.0033 1.1E-07 62.9 15.4 183 8-207 29-241 (296)
45 2vgl_A Adaptor protein complex 97.3 0.0046 1.6E-07 67.2 16.3 233 17-293 340-588 (621)
46 2x1g_F Cadmus; transport prote 97.2 0.0056 1.9E-07 68.1 16.4 210 23-248 438-662 (971)
47 2z6g_A B-catenin; FULL-length, 97.2 0.015 5.2E-07 64.5 19.3 243 17-287 161-424 (780)
48 1w63_A Adapter-related protein 97.1 0.0051 1.7E-07 66.3 14.6 230 18-289 325-575 (618)
49 3now_A UNC-45 protein, SD10334 97.1 0.011 3.8E-07 67.3 17.6 255 19-292 508-783 (810)
50 2x1g_F Cadmus; transport prote 97.0 0.0073 2.5E-07 67.1 14.4 256 19-288 519-811 (971)
51 2z6h_A Catenin beta-1, beta-ca 97.0 0.026 9.1E-07 60.2 18.0 242 17-286 25-287 (644)
52 1jdh_A Beta-catenin; beta-cate 97.0 0.024 8.2E-07 57.2 16.6 215 19-248 73-338 (529)
53 2x19_B Importin-13; nuclear tr 96.9 0.025 8.4E-07 62.5 17.3 216 23-252 424-652 (963)
54 1jdh_A Beta-catenin; beta-cate 96.8 0.057 2E-06 54.4 18.2 242 17-287 28-291 (529)
55 2z6h_A Catenin beta-1, beta-ca 96.8 0.018 6.2E-07 61.4 15.3 248 19-288 70-333 (644)
56 2z6g_A B-catenin; FULL-length, 96.7 0.023 8E-07 63.0 15.5 205 19-249 289-518 (780)
57 2db0_A 253AA long hypothetical 96.7 0.02 7E-07 56.7 13.0 191 58-283 47-242 (253)
58 2iw3_A Elongation factor 3A; a 96.6 0.043 1.5E-06 63.9 16.9 192 84-294 14-207 (986)
59 1wa5_C Importin alpha RE-expor 96.5 0.81 2.8E-05 51.4 26.4 270 8-295 6-322 (960)
60 3now_A UNC-45 protein, SD10334 96.4 0.054 1.9E-06 61.8 15.9 258 7-287 380-690 (810)
61 2iw3_A Elongation factor 3A; a 96.3 0.076 2.6E-06 61.9 17.2 190 60-268 32-223 (986)
62 2vgl_A Adaptor protein complex 96.0 0.046 1.6E-06 59.5 12.7 246 3-270 145-416 (621)
63 2x19_B Importin-13; nuclear tr 95.5 0.34 1.2E-05 53.5 17.1 123 12-144 494-623 (963)
64 2of3_A ZYG-9; multifunctional 95.5 0.17 6E-06 50.7 13.4 191 37-252 43-239 (266)
65 1xqr_A HSPBP1 protein; armadil 95.1 0.48 1.7E-05 47.3 15.2 194 80-287 24-234 (296)
66 3nmw_A APC variant protein; AR 94.7 0.17 5.6E-06 51.8 10.8 181 19-250 140-335 (354)
67 3ibv_A Exportin-T; karyopherin 94.4 1.3 4.6E-05 50.9 18.7 134 8-144 490-654 (980)
68 4ffb_C Protein STU2; tubulin f 94.4 0.5 1.7E-05 45.3 12.8 155 131-294 53-215 (278)
69 3nmz_A APC variant protein; pr 94.3 0.42 1.4E-05 50.8 13.2 181 19-250 256-451 (458)
70 1xm9_A Plakophilin 1; armadill 93.6 1.9 6.5E-05 44.5 16.1 71 19-93 57-136 (457)
71 3opb_A SWI5-dependent HO expre 93.5 0.85 2.9E-05 52.2 14.5 149 85-252 458-638 (778)
72 3opb_A SWI5-dependent HO expre 93.1 2.8 9.7E-05 48.0 17.8 239 15-260 467-743 (778)
73 3nmw_A APC variant protein; AR 91.8 2 6.8E-05 43.8 13.3 231 39-287 72-330 (354)
74 3nmz_A APC variant protein; pr 91.2 3.7 0.00013 43.6 15.0 229 39-287 188-446 (458)
75 1te4_A Conserved protein MTH18 90.6 0.87 3E-05 38.7 7.9 117 134-287 13-129 (131)
76 4ady_A RPN2, 26S proteasome re 89.6 2.6 9E-05 49.3 13.1 60 219-288 614-673 (963)
77 3ibv_A Exportin-T; karyopherin 87.8 9.9 0.00034 43.9 16.2 220 58-288 458-727 (980)
78 3l6x_A Catenin delta-1; cateni 87.8 13 0.00044 41.0 16.5 266 19-289 147-475 (584)
79 3m1i_C Exportin-1; heat repeat 87.6 0.72 2.5E-05 52.4 6.7 185 23-220 430-636 (1049)
80 1te4_A Conserved protein MTH18 87.1 1.2 4E-05 37.9 6.3 117 86-246 14-130 (131)
81 3l6x_A Catenin delta-1; cateni 84.9 51 0.0017 36.3 20.8 239 19-279 205-496 (584)
82 3a6p_A Exportin-5; exportin-5, 83.5 3.3 0.00011 48.5 9.7 123 18-144 544-682 (1204)
83 3tjz_B Coatomer subunit gamma; 83.1 25 0.00085 36.5 15.0 193 58-293 83-275 (355)
84 4atg_A TAF6; transcription, TF 81.1 3.5 0.00012 39.9 7.3 89 42-144 89-178 (196)
85 1xm9_A Plakophilin 1; armadill 80.8 14 0.00048 38.0 12.3 150 86-249 285-449 (457)
86 1vsy_5 Proteasome activator BL 79.8 12 0.00041 43.7 12.5 267 4-288 553-870 (997)
87 3gs3_A Symplekin, LD45768P; he 75.0 16 0.00055 36.3 10.3 94 21-119 30-127 (257)
88 4atg_A TAF6; transcription, TF 73.0 28 0.00097 33.6 11.1 142 59-214 24-169 (196)
89 3tt9_A Plakophilin-2; cell adh 71.8 14 0.00047 36.0 8.8 107 133-248 8-123 (233)
90 3m1i_C Exportin-1; heat repeat 71.2 93 0.0032 35.4 16.5 109 26-143 520-642 (1049)
91 3o2t_A Symplekin; heat repeat, 69.1 1.2E+02 0.0041 32.0 21.7 94 21-119 40-137 (386)
92 4hat_C Exportin-1; heat repeat 68.5 14 0.0005 42.9 9.4 162 39-207 446-621 (1023)
93 3grl_A General vesicular trans 66.8 63 0.0022 36.5 13.7 231 38-288 120-391 (651)
94 4ady_A RPN2, 26S proteasome re 66.3 50 0.0017 38.8 13.2 220 24-287 376-603 (963)
95 3oc3_A Helicase MOT1, MOT1; re 63.7 15 0.0005 41.9 7.8 131 133-290 299-432 (800)
96 2of3_A ZYG-9; multifunctional 63.4 15 0.0005 36.9 7.1 101 7-117 132-238 (266)
97 4gmo_A Putative uncharacterize 56.2 41 0.0014 36.9 9.7 147 5-163 36-215 (684)
98 1w9c_A CRM1 protein, exportin 48.7 10 0.00036 39.2 3.3 145 42-191 71-230 (321)
99 4hat_C Exportin-1; heat repeat 48.6 1.6E+02 0.0054 34.4 13.4 215 19-252 357-621 (1023)
100 1lrv_A LRV, leucine-rich repea 44.9 6.9 0.00024 38.3 1.3 39 231-288 205-243 (244)
101 1vsy_4 Proteasome activator BL 42.4 1.7E+02 0.0058 33.5 12.2 113 126-251 332-457 (799)
102 3l9t_A Putative uncharacterize 42.3 2.7E+02 0.0094 27.8 12.6 167 81-288 34-204 (240)
103 3a6p_A Exportin-5; exportin-5, 42.2 2.2E+02 0.0075 33.5 13.4 130 101-246 547-697 (1204)
104 3oc3_A Helicase MOT1, MOT1; re 39.3 1.7E+02 0.006 33.5 11.2 144 126-286 168-323 (800)
105 1vsy_5 Proteasome activator BL 36.2 2.2E+02 0.0075 33.4 12.0 153 27-188 783-950 (997)
106 1x5b_A Signal transducing adap 26.6 3.2E+02 0.011 25.0 9.3 71 217-294 53-128 (163)
107 3gjx_A Exportin-1; transport, 25.2 1.6E+02 0.0054 34.8 8.4 77 80-163 517-596 (1073)
108 3tt9_A Plakophilin-2; cell adh 24.3 4.8E+02 0.017 25.1 16.9 170 86-270 10-206 (233)
109 3d9j_A RNA-binding protein 16; 22.8 4.2E+02 0.014 23.8 10.8 107 176-291 6-119 (145)
110 4gmo_A Putative uncharacterize 21.9 50 0.0017 36.2 3.2 55 231-287 45-101 (684)
111 3b2a_A TON_1937, putative unch 21.0 6.5E+02 0.022 25.7 10.8 161 85-264 34-198 (265)
112 3b2a_A TON_1937, putative unch 20.2 3.5E+02 0.012 27.6 8.6 109 26-150 95-206 (265)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=1.4e-11 Score=115.37 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=153.4
Q ss_pred HHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcCCCCC
Q 007426 44 LFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGIDPTT 122 (604)
Q Consensus 44 ~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~idp~~ 122 (604)
.|+..+.+.+. ..|+.++.-+..+...|+..+.+++.+|+..+.++| .|++. .||.+..++++.|+..+..
T Consensus 19 ~l~~~l~s~~w---~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~~l~~--- 90 (242)
T 2qk2_A 19 DFYDKLEEKKW---TLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNV--VLVAMAGKCLALLAKGLAK--- 90 (242)
T ss_dssp THHHHHTCSSH---HHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHGG---
T ss_pred HHHhhhccCCH---HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHhh---
Confidence 47777765443 479999999999999988878889999999999999 49874 5799999999999965431
Q ss_pred ccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHH
Q 007426 123 PEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMA 201 (604)
Q Consensus 123 ~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~A 201 (604)
.-...+..++.+|++.|.+++..+...|+-||.++++.. + +..+++.+..+|++++.+.+ .-+..++.
T Consensus 91 ---~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 91 ---RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----S---LEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp ---GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----C---HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 123456779999999999999999999999999999963 2 56889999999999887777 56666766
Q ss_pred H-HHhhhh-HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchh
Q 007426 202 L-AKHNAL-IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIF 257 (604)
Q Consensus 202 L-s~~n~~-iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~ 257 (604)
+ ..+++. ....|...+++.+..+|. ..+|..|++|.++|..|+..++.+.+.
T Consensus 160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~----D~~~~VR~~A~~~l~~l~~~vg~~~~~ 213 (242)
T 2qk2_A 160 ALTRTQPTALNKKLLKLLTTSLVKTLN----EPDPTVRDSSAEALGTLIKLMGDKAVT 213 (242)
T ss_dssp HHTTCCGGGCCHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHcCCCCccHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4 343333 346777889999999998 689999999999999999888643333
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.05 E-value=1.5e-09 Score=118.46 Aligned_cols=259 Identities=14% Similarity=0.113 Sum_probs=184.8
Q ss_pred CchhHHHHHHHHHHHHhhcCC---CChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426 19 DADSRKSAMKALKSYVKDLDS---KAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLA 94 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~---dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLs 94 (604)
+.+.|..|++.|..+++.... +.++.||..+... .++...+|+.++..|..++..++..+.||+.+++..+++.+.
T Consensus 187 ~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 187 SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266 (852)
T ss_dssp SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc
Confidence 556678899999888764331 2345566555542 233346899999999999999999999999999999999998
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh-----------c-----------ccchhhHH
Q 007426 95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL-----------G-----------SQESLTAG 152 (604)
Q Consensus 95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~-----------~-----------qqe~vQsG 152 (604)
|.+. .||..+.....+++.... .. .--...+..++..|+..|. + ..-.+.-.
T Consensus 267 ~~~~--~vr~~a~e~l~~l~~~~~---~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 267 DQDE--NVALEACEFWLTLAEQPI---CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp CSSH--HHHHHHHHHHHHHTTSTT---HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred CCcH--HHHHHHHHHHHHHhcchh---HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence 8774 368877777777764210 00 0001123344555555551 2 11246778
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCC
Q 007426 153 AALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGE 231 (604)
Q Consensus 153 AALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~s 231 (604)
|+.||..+.+.. +++++..+.+.+...|++++.+.+ +-+..+++++...+..+..+...+++..+..|+ .
T Consensus 341 a~~~L~~la~~~-----~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~----d 411 (852)
T 4fdd_A 341 SAAALDVLANVY-----RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS----D 411 (852)
T ss_dssp HHHHHHHHHHHH-----GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC----C
Confidence 999999999862 467888999999999998766665 556666777766665666788888999899988 6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426 232 ANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 232 sDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I 292 (604)
.+|..|++|+.+|..++..+.......+...++..|-.+=-|.-+.||+++..||...-+.
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876543334455666776666555577899999999999765543
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.05 E-value=2.3e-09 Score=121.43 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=186.4
Q ss_pred HHHHHHhhh-cCCchhHHHHHHHHHHHHhh----cCCC----ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 8 ILRQELANL-DKDADSRKSAMKALKSYVKD----LDSK----AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 8 ~~rqeL~KL-s~DRDT~~iA~~eLesiak~----Ld~d----tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
.+-+.|.|+ +.|.|.|++|+++|....+. ++++ .+|.++..+.| +...+|+.++..++.++..-+.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhCCH--
Confidence 456777777 45889999999999988753 2333 25555555542 3346899999999999875444
Q ss_pred cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc-ccchhhHHHHHHH
Q 007426 79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG-SQESLTAGAALCL 157 (604)
Q Consensus 79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~-qqe~vQsGAALCL 157 (604)
++++.|+..++..|.|++. .+|.++..+++.++..+........-.......++..|+++|.. ++..++.+|..+|
T Consensus 82 -~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 82 -YQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp -HHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 7999999999999988875 46999999999999775422100011223466788889999974 5567899999999
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426 158 KALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 158 AAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~ 236 (604)
..+++...-...| .+.++++.+...|.+++...+ +-+..++.++...+.- ....+++..++.|.. ..+|..
T Consensus 159 ~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~~~~l~~l~~~L~~---~~~~~~ 230 (1230)
T 1u6g_C 159 ADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSK---NDSMST 230 (1230)
T ss_dssp HHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH---TCSSCS
T ss_pred HHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhcc---CCchhH
Confidence 9999753212223 468899999999997654332 2334444444433211 122356777777764 234688
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426 237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~ 295 (604)
|.+|+++|..|+..+. +.+..+...++..|-+.--|.-+.||+++.+++..|=+..++
T Consensus 231 r~~a~~~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp CTTHHHHHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 9999999999998875 355555555555554444477889999999999999876543
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.03 E-value=2.8e-08 Score=105.80 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=183.2
Q ss_pred CchhHHHHHHHHHHHHhhcCC-----CC----hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC----CCCcccHHHH
Q 007426 19 DADSRKSAMKALKSYVKDLDS-----KA----IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG----ANIVPQIDSI 85 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~-----dt----lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG----~~iaPhL~KI 85 (604)
++.-|..|+..|.++++.+.+ .. +|.++..+.+. +.+|..+...+..++..-+ ..+.||++.|
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~i 499 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATPSPIYNFYPAL 499 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 345677888899999887632 22 46666666532 5689999999998888755 6688999999
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc---------------cchhh
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS---------------QESLT 150 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q---------------qe~vQ 150 (604)
|..+++.|.+.+....+|.++.++++.|+.... ++....+..++.+|++.|... ...++
T Consensus 500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~------~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYAT------DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc------hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 999999998666434589999999999997642 123345667888888888742 33467
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCcc-chh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCC
Q 007426 151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKST-QTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAG 228 (604)
Q Consensus 151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~-qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~ 228 (604)
.++.-||..+++.-.-. -.+.+..+.+.+..+|+.... ..+ .-+.+++++++..+.-+.+|...+++..+.+|.
T Consensus 574 ~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-- 649 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSS--VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-- 649 (861)
T ss_dssp HHHHHHHHHHHHHCGGG--TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--
Confidence 88888999998864311 124567888889999987653 232 456677788877766667888889999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCC-c-cchhHHHHHHHH
Q 007426 229 PGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQ-M-AYVKGASLEALQ 287 (604)
Q Consensus 229 ~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDK-V-k~VR~am~eALq 287 (604)
..++..|.+|+.+|..++..++ ..+..+...++..|-.+=-|. . +.||.++..++.
T Consensus 650 --~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 650 --QVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 6899999999999999998886 456666666665544332222 2 578887776663
No 5
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.1e-08 Score=99.09 Aligned_cols=204 Identities=12% Similarity=0.139 Sum_probs=153.6
Q ss_pred HHHhhhccCCCCCCCchhhHHHHHHH-HHHHhCCCC--cccHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcCC
Q 007426 44 LFLAQVSETKENGSVSGEYTISLYEV-LARVHGANI--VPQIDSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGID 119 (604)
Q Consensus 44 ~FLscV~dtd~~~s~vRke~I~Lle~-LArvHG~~i--aPhL~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~id 119 (604)
-|...|.+++. .-|++++.-+.. +..-+.+.+ ..++..++..+.+.| .|++ +.||.++..+++.|+..+..
T Consensus 20 ~f~~~l~s~~w---~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n--~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 20 DFQERITSSKW---KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN--IQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp THHHHHTCSSH---HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHhhcCCH---HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccc
Confidence 36666654444 368999877777 766566766 567789999999999 7887 45789999999999976641
Q ss_pred CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHH
Q 007426 120 PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGL 198 (604)
Q Consensus 120 p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~L 198 (604)
+.+. ..-...++-+|+|.|.++...|+--+..||.++++..+. .++..-+..+.+++..+|+.++.+.+ +-+..
T Consensus 95 ~~f~----~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 95 PGFS----KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp TTSC----HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred cccc----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 2221 023456888999999998888988888889999997542 22221245677788899999887777 56666
Q ss_pred HHHHHHhhh---hHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHH
Q 007426 199 VMALAKHNA---LIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELE 261 (604)
Q Consensus 199 V~ALs~~n~---~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~ 261 (604)
+..++...+ ..+..|. ..+++...++|. .++...|.+|.++|..|++.++.+.+..++.
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~----D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~ 232 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN----DTQPAIRTIGFESFAILIKIFGMNTFVKTLE 232 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 667666655 4566788 889999999998 5799999999999999999998665655443
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.97 E-value=9.4e-09 Score=104.23 Aligned_cols=245 Identities=11% Similarity=0.060 Sum_probs=170.4
Q ss_pred CchhHHHHHHHHHHHHhhcCC-----CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc--ccHHHHHHHHHh
Q 007426 19 DADSRKSAMKALKSYVKDLDS-----KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV--PQIDSIMTTITK 91 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~-----dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia--PhL~KImstIVR 91 (604)
+...|+.|++.|..+++.+.+ +-+|.|+..+.|.+ ..+|+.+..-++.++...|.... ++++.|+..+.+
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE---AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 345789999999999987743 45788888776543 46899999999999998877644 688999999999
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH
Q 007426 92 TLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD 171 (604)
Q Consensus 92 RLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~ 171 (604)
.+.|++. .||.++..+++.|+..+.+ ......+...|...|..+++.|...|+-+|..+++.- .++
T Consensus 332 ~l~d~~~--~vR~~a~~~l~~l~~~~~~--------~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~ 397 (588)
T 1b3u_A 332 LVSDANQ--HVKSALASVIMGLSPILGK--------DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI----GIR 397 (588)
T ss_dssp HHTCSCH--HHHHHHHTTGGGGHHHHCH--------HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS----CHH
T ss_pred HhcCCCH--HHHHHHHHHHHHHHHHhhH--------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc----CHH
Confidence 8888763 5899999999988865421 1122334444555666666789999999999998862 344
Q ss_pred HHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426 172 EMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS 250 (604)
Q Consensus 172 elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~ 250 (604)
.+.+.+.|.+.+++++++.+.. +-+.+++.+++.-+.- .+...+++..+..|. ..+|..|.+|+++|..++..
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLV----DHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGG----CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHH
Confidence 5667899999999988766554 3445555554432211 112345666667776 56888888888888888876
Q ss_pred cCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 251 LDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 251 ~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
.+... ....++..|...-.|.-..||.++.+++...
T Consensus 472 ~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 472 FGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred hCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 65321 2345556666666677777888777776554
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.95 E-value=4.2e-08 Score=99.50 Aligned_cols=219 Identities=17% Similarity=0.144 Sum_probs=148.3
Q ss_pred hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC
Q 007426 42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT 121 (604)
Q Consensus 42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~ 121 (604)
+|.|+..+.|. ...+|..++.-++.++...|.. .+.+.++..+++.+.|.+ ..+|.++..+++.++..+....
T Consensus 365 ~p~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~~~~ 437 (588)
T 1b3u_A 365 LPLFLAQLKDE---CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAK--WRVRLAIIEYMPLLAGQLGVEF 437 (588)
T ss_dssp HHHHHHHHTCS---CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCC---chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHcCHHH
Confidence 34555555432 2346777777677666665532 134556666666666654 4578888899998886543110
Q ss_pred CccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHH
Q 007426 122 TPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVM 200 (604)
Q Consensus 122 ~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ 200 (604)
....++..|...|......|...|+.||+.+++.- .+......+.|.+..++++++.+.. +-+.+++
T Consensus 438 --------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 438 --------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505 (588)
T ss_dssp --------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 11235555666666666779999999999999862 3444567899999988888776654 4455555
Q ss_pred HHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhH
Q 007426 201 ALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKG 280 (604)
Q Consensus 201 ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~ 280 (604)
.++...+. +.+...+++..+..|+ ..+...|.+|+.+|..+....+...+ ...++..|+...-|.=+.||.
T Consensus 506 ~l~~~~~~--~~~~~~~~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~p~l~~l~~d~d~~vr~ 576 (588)
T 1b3u_A 506 VLSEVCGQ--DITTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKY 576 (588)
T ss_dssp HHHHHHHH--HHHHHHTHHHHHHGGG----CSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHhcCH--HHHHHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHhchhhh---HHHHHHHHHHHcCCCchhHHH
Confidence 55554322 2345567777778887 57899999999999999877754322 246677777778899999999
Q ss_pred HHHHHHHH
Q 007426 281 ASLEALQT 288 (604)
Q Consensus 281 am~eALq~ 288 (604)
.+.+|+..
T Consensus 577 ~a~~al~~ 584 (588)
T 1b3u_A 577 FAQEALTV 584 (588)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.95 E-value=1.3e-08 Score=115.34 Aligned_cols=263 Identities=13% Similarity=0.106 Sum_probs=187.2
Q ss_pred HHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCC-------------hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh
Q 007426 9 LRQELANLD-KDADSRKSAMKALKSYVKDLDSKA-------------IPLFLAQVSETKENGSVSGEYTISLYEVLARVH 74 (604)
Q Consensus 9 ~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dt-------------lP~FLscV~dtd~~~s~vRke~I~Lle~LArvH 74 (604)
+...+..|. .+...|..|+..|..|+..+.+.. +|.++.++.+ .+...+|.+++..|..++...
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHh
Confidence 333444443 344558889999999999997652 5555555553 223468999999999999999
Q ss_pred CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccc-hhhHHH
Q 007426 75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE-SLTAGA 153 (604)
Q Consensus 75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe-~vQsGA 153 (604)
|..+.||++.++..++.-|.+++. .||.+...+++.++.+..+. .+..++.+|.+.|....+ .+..+|
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~--~vR~~a~~al~~l~~~~~~~---------~~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRL--AVRKRTIIALGHLVMSCGNI---------VFVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSH--HHHHHHHHHHHHHTTTC-------------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HhHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHhccCCchhHHHHH
Confidence 999999999999999999988764 47999999999998765322 234466677777766543 567788
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCC----
Q 007426 154 ALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAG---- 228 (604)
Q Consensus 154 ALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~---- 228 (604)
+-|+..+++...-.+. +.+.++.+-+..+|+++..... +-+.+.+.+++..+..+.+|...+++..++.|...
T Consensus 235 ~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence 8999998886322222 2345678888888876544333 45666777777766655678888888877766310
Q ss_pred -----------------------------CCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426 229 -----------------------------PGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK 279 (604)
Q Consensus 229 -----------------------------~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR 279 (604)
.....|..|++|+++|..++... ++.+......++..|-.+=.|+-..||
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSHHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 01224999999999999998754 455677777788888766569999999
Q ss_pred HHHHHHHH
Q 007426 280 GASLEALQ 287 (604)
Q Consensus 280 ~am~eALq 287 (604)
.++.+++.
T Consensus 392 ~~a~~~l~ 399 (1230)
T 1u6g_C 392 ADVFHAYL 399 (1230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888864
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.90 E-value=9e-08 Score=101.97 Aligned_cols=261 Identities=11% Similarity=0.105 Sum_probs=188.4
Q ss_pred chhHHHHHHHHHHHHhhcCCCC-------hhHHHhhhccC--------C----CCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426 20 ADSRKSAMKALKSYVKDLDSKA-------IPLFLAQVSET--------K----ENGSVSGEYTISLYEVLARVHGANIVP 80 (604)
Q Consensus 20 RDT~~iA~~eLesiak~Ld~dt-------lP~FLscV~dt--------d----~~~s~vRke~I~Lle~LArvHG~~iaP 80 (604)
.+.|..|++.|..+++.+..+. +|.++..+.+. . +....+|..++..++.+++.-|..+.|
T Consensus 514 ~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5668889999999999876542 23344444432 0 111245788999999999999999999
Q ss_pred cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426 81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL 160 (604)
Q Consensus 81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl 160 (604)
|++.||..++..|.+.++. .+|..+..+++.|+.... ++-...+..++..|++.|......+...|.-|+..+
T Consensus 594 ~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~------~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l 666 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLG------KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADI 666 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999877641 368888889999985532 122334667888899999655566777788888888
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhhcCCc--cchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCC--CCC--
Q 007426 161 VDSDNWRFASDEMVNKVCQNVAGALEEKS--TQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPG--EAN-- 233 (604)
Q Consensus 161 VEs~nwr~Ap~elv~rlc~Rv~kaL~~ks--~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~--ssD-- 233 (604)
++.-. ..-.+.+..+.+.+...|+++. ...+ +-+.+++.++...+..+.+|...+++..+++++.... ..|
T Consensus 667 ~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~ 744 (861)
T 2bpt_A 667 SNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEAL 744 (861)
T ss_dssp HHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHH
T ss_pred HHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 77632 1223567788888888888754 2333 5677788888887777788999999999998873110 111
Q ss_pred ---HHHHHHHHHHHHHHHhhcCC--CchhhhHHHHHHHHHhccCCC----ccchhHHHHHHHHHH
Q 007426 234 ---SQKRLLAIQMLNFLMKSLDP--RSIFSELELIIEGMENCQSDQ----MAYVKGASLEALQTA 289 (604)
Q Consensus 234 ---Wq~RKAAAeaL~~la~~~d~--~~L~se~~S~I~~LE~cRfDK----Vk~VR~am~eALq~w 289 (604)
+..|.++.+++..|+..++. ..+..+...+++.|..+--|. =..||.++..++...
T Consensus 745 ~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l 809 (861)
T 2bpt_A 745 DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 67899999999999988752 347777888999887764342 356888877776554
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.86 E-value=2.4e-08 Score=108.89 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChh
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFP 101 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~ 101 (604)
|+.|...|..+++.+..+.+|.++..|.+. .++...+|+.++..++.++...+..+.||++.++..+++.|.|+. ..
T Consensus 338 r~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~--~~ 415 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK--AL 415 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS--HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC--HH
Confidence 888999999999998766666666555443 233457899999999999998888888999999999999998886 45
Q ss_pred hHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Q 007426 102 LQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNV 181 (604)
Q Consensus 102 vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv 181 (604)
||.++..+++.++.++... .....+..++.+|++.|..++..++..|+.+|..+++..+-. -.+.+..+.+.+
T Consensus 416 Vr~~a~~~l~~l~~~~~~~-----~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~--l~~~l~~ll~~L 488 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQ-----PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 488 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHS-----CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--GGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh--hHhHHHHHHHHH
Confidence 8999999999999765311 122345677888888888777889999999999999864321 123456666666
Q ss_pred HHhhcCCccchh-hHHHHH---------------------------------------------HHHHHhhhhHHHHhHH
Q 007426 182 AGALEEKSTQTN-SHMGLV---------------------------------------------MALAKHNALIVEAYAR 215 (604)
Q Consensus 182 ~kaL~~ks~qtk-Ahl~LV---------------------------------------------~ALs~~n~~iiea~g~ 215 (604)
..+|+....... ..+..+ +.+++.-+.-+.+|..
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 666664321111 111222 2223333333344555
Q ss_pred HHHHHHHHHhcC-------------CCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhH
Q 007426 216 LLIQSGLRILNA-------------GPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKG 280 (604)
Q Consensus 216 ~Ll~S~l~~L~~-------------~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~ 280 (604)
.+++..+.+|.. .....|-..|.+|.++|..|+..++ ..+..+. ..++..|-.|=-|+.+.||.
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~vr~ 647 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG-GGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh-HhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence 555554444432 2334577899999999999998886 3455554 56888888888889999999
Q ss_pred HHHHHHHH
Q 007426 281 ASLEALQT 288 (604)
Q Consensus 281 am~eALq~ 288 (604)
+++.++..
T Consensus 648 ~a~~~l~~ 655 (852)
T 4fdd_A 648 SSFALLGD 655 (852)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.85 E-value=8.2e-08 Score=102.52 Aligned_cols=263 Identities=10% Similarity=0.067 Sum_probs=179.0
Q ss_pred chhHHHHHHHHHHHHhhcCCC----Ch-hHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH-HHHHHHHhh
Q 007426 20 ADSRKSAMKALKSYVKDLDSK----AI-PLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID-SIMTTITKT 92 (604)
Q Consensus 20 RDT~~iA~~eLesiak~Ld~d----tl-P~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~-KImstIVRR 92 (604)
.+-|..|++.|..++..+..+ .. ..|+..+.+. .+....+|+.++..|..++..++..+.||+. .|+..++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988755321 00 1233333321 2223468999999999999999999999999 999999998
Q ss_pred ccCCCCChhhHHHHHHHHHHHHhhcCC--------------CCC-ccccchhhHHhhhchhHHhhhcc-------cchhh
Q 007426 93 LASSAGSFPLQQACSRVVPAIARYGID--------------PTT-PEDKKRHIIHSLCKPLSDSLLGS-------QESLT 150 (604)
Q Consensus 93 LsDsdSS~~vR~AC~kvv~ALAry~id--------------p~~-~~~~~~~ii~sl~KPL~EaL~~q-------qe~vQ 150 (604)
+.+.+- .+|..+.+....++.+..+ |.. ...-....+..++.+|+..|... .-.+.
T Consensus 268 ~~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r 345 (876)
T 1qgr_A 268 MKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345 (876)
T ss_dssp HTCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred hcCCch--HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHH
Confidence 877653 3688888888888865310 100 00111112355667777777643 22467
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCC
Q 007426 151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAG 228 (604)
Q Consensus 151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~ 228 (604)
-+|+.||..+++.- +++++..+.+.+...|++++.+.+ +-+..++.++...+ ..+..+...+++..+..|.
T Consensus 346 ~~a~~~l~~l~~~~-----~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~-- 418 (876)
T 1qgr_A 346 KAAGVCLMLLATCC-----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-- 418 (876)
T ss_dssp HHHHHHHHHHHHHH-----GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHC-----cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC--
Confidence 78999999998862 356788899999999998776655 55556666665443 4456777888999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhh
Q 007426 229 PGEANSQKRLLAIQMLNFLMKSLDPRS-IFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAA 294 (604)
Q Consensus 229 ~~ssDWq~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~ 294 (604)
..+|..|.+|+.+|..++....... ...+...++..|-.+=.|. +.||..+..||...-...+
T Consensus 419 --d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 419 --DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999997764321 2334455554444433344 8899998888877655443
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.79 E-value=2.7e-07 Score=98.52 Aligned_cols=259 Identities=10% Similarity=0.089 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHhhcCCCC--------hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc
Q 007426 22 SRKSAMKALKSYVKDLDSKA--------IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL 93 (604)
Q Consensus 22 T~~iA~~eLesiak~Ld~dt--------lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL 93 (604)
.+..++.-|..+++.+..+. +|.++..+.+... ...+++.++.+++.++...|..+.||+++++..+++-|
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45678889999998877112 3344444433211 13579999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--cchhhHHHHHHHHHHhccCCCCCCCH
Q 007426 94 ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--QESLTAGAALCLKALVDSDNWRFASD 171 (604)
Q Consensus 94 sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--qe~vQsGAALCLAAlVEs~nwr~Ap~ 171 (604)
.+.+ ...+|.++..+++.|++.+. +.-...+..++.+|.+.|... ...+..-++.|+..++..-.-.+.
T Consensus 659 ~~~~-~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-- 729 (876)
T 1qgr_A 659 KNYA-EYQVCLAAVGLVGDLCRALQ------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK-- 729 (876)
T ss_dssp HHCT-THHHHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG--
T ss_pred cCcc-hHHHHHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH--
Confidence 8763 23479999999999997653 122234566777788887662 346777888888887764221122
Q ss_pred HHHHHHHHHHHHhhcCCcc-----------chh-hHHHHHHHHHHhhh----------hHHHHhHHHHHHHHHHHhcCCC
Q 007426 172 EMVNKVCQNVAGALEEKST-----------QTN-SHMGLVMALAKHNA----------LIVEAYARLLIQSGLRILNAGP 229 (604)
Q Consensus 172 elv~rlc~Rv~kaL~~ks~-----------qtk-Ahl~LV~ALs~~n~----------~iiea~g~~Ll~S~l~~L~~~~ 229 (604)
+.+..+.+.+.++++.+.. .-+ +-+.....+++..+ ..+.+|...++.-....+.
T Consensus 730 ~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--- 806 (876)
T 1qgr_A 730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG--- 806 (876)
T ss_dssp GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc---
Confidence 2567788888888875420 001 12222222222211 2334555555544444434
Q ss_pred CCC--CHHHHHHHHHHHHHHHhhcCCCchhhh-HHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHhhh
Q 007426 230 GEA--NSQKRLLAIQMLNFLMKSLDPRSIFSE-LELIIEGMEN-CQSDQMAYVKGASLEALQTAKRIAA 294 (604)
Q Consensus 230 ~ss--DWq~RKAAAeaL~~la~~~d~~~L~se-~~S~I~~LE~-cRfDKVk~VR~am~eALq~wK~Ia~ 294 (604)
.. +...|++|+.+|..|+...+...+..+ ...+|..|=. +.-|+=+.||.+|..|+..-+++..
T Consensus 807 -~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 807 -DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp -CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence 34 669999999999999988864145555 3445554444 6667778999999999999888753
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.68 E-value=6.5e-07 Score=88.01 Aligned_cols=254 Identities=10% Similarity=0.074 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhhcC-----CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHHHHHHHhhccCCC
Q 007426 24 KSAMKALKSYVKDLD-----SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSIMTTITKTLASSA 97 (604)
Q Consensus 24 ~iA~~eLesiak~Ld-----~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KImstIVRRLsDsd 97 (604)
+.+..-|-.|++..- ++-+|.++.++.+.. .+..+|+.++..|+.++... +..+.||++.|+..+++-|.|..
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 185 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE 185 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC
Confidence 446666777777642 344666666665431 02357999999999999876 67789999999999999998884
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-H
Q 007426 98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-K 176 (604)
Q Consensus 98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-r 176 (604)
.+..||.+..++++.+..++.+... .......+...|.+.+......+...++-||..+++...-.+. +.+. .
T Consensus 186 ~~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~~~~ 259 (462)
T 1ibr_B 186 PSNNVKLAATNALLNSLEFTKANFD----KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME--TYMGPA 259 (462)
T ss_dssp CCHHHHHHHHHHHHHHTTTTHHHHT----SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT--TTTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3345898888888887655331100 0011122455666666666677899999999999986432121 2233 5
Q ss_pred HHHHHHHhhcCCccchh-hHHHHHHHHHHhh---------------------hhHHHHhHHHHHHHHHHHhcCC---CCC
Q 007426 177 VCQNVAGALEEKSTQTN-SHMGLVMALAKHN---------------------ALIVEAYARLLIQSGLRILNAG---PGE 231 (604)
Q Consensus 177 lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n---------------------~~iiea~g~~Ll~S~l~~L~~~---~~s 231 (604)
+.+-+...+++...... .-+.....++... ...+..+...+++..++.|.+. ..+
T Consensus 260 l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~ 339 (462)
T 1ibr_B 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339 (462)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc
Confidence 55556666665433222 2222333333331 1134556677888888888542 345
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 232 ANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 232 sDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
++|..|++|+++|..|+...+. .+ ...++..+...=.|.-..||+++..|+-.
T Consensus 340 ~~~~~r~~a~~~L~~l~~~~~~-~~---~~~~~~~l~~~l~~~~~~~r~aal~~l~~ 392 (462)
T 1ibr_B 340 DDWNPCKAAGVCLMLLATCCED-DI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (462)
T ss_dssp TCCSHHHHHHHHHHHHHHHTTT-TH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH-HH---HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 7899999999999999988763 22 23455555544446778899998888754
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.68 E-value=3.7e-07 Score=89.75 Aligned_cols=238 Identities=9% Similarity=0.073 Sum_probs=160.8
Q ss_pred chhHHHHHHHHHHHHhhc----CCCChhH-HHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH-HHHHHHHhh
Q 007426 20 ADSRKSAMKALKSYVKDL----DSKAIPL-FLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID-SIMTTITKT 92 (604)
Q Consensus 20 RDT~~iA~~eLesiak~L----d~dtlP~-FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~-KImstIVRR 92 (604)
.+-|..|++.|-.++.-+ +...+.. ++..|.+. .++...+|+.++..|..++..++..+.||++ .|+..++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888755432 2211112 23333322 2233468999999999999999999999999 999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHhhcC------CCCCc-----cccchhh----HHhhhchhHHhhhcc-------cchhh
Q 007426 93 LASSAGSFPLQQACSRVVPAIARYGI------DPTTP-----EDKKRHI----IHSLCKPLSDSLLGS-------QESLT 150 (604)
Q Consensus 93 LsDsdSS~~vR~AC~kvv~ALAry~i------dp~~~-----~~~~~~i----i~sl~KPL~EaL~~q-------qe~vQ 150 (604)
+.|.+. .||..+...+..++.... +.... ......+ +..++..|++.|... .-.+.
T Consensus 268 ~~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r 345 (462)
T 1ibr_B 268 MKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345 (462)
T ss_dssp HHCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred HcCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHH
Confidence 987764 368888888888875431 00000 0001112 233444455555432 12578
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCC
Q 007426 151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAG 228 (604)
Q Consensus 151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~ 228 (604)
.+|+-||..+++.- ++.++..+.+.+...|++++.+.+ +-+.++++++.-.. ..+..+...+++..+..|.
T Consensus 346 ~~a~~~L~~l~~~~-----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-- 418 (462)
T 1ibr_B 346 KAAGVCLMLLATCC-----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-- 418 (462)
T ss_dssp HHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc--
Confidence 89999999999962 357788899999999998877766 66667777765332 3344566678899999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHH
Q 007426 229 PGEANSQKRLLAIQMLNFLMKSLDPRS-IFSELELIIEGME 268 (604)
Q Consensus 229 ~~ssDWq~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE 268 (604)
..++..|.+|+.+|..++....+.. ...++..++..|-
T Consensus 419 --d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 419 --DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 5789999999999999998775432 1356677776654
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.65 E-value=9.1e-07 Score=87.17 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSIMTTI 89 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KImstI 89 (604)
|.+.+..|+..|-.++..- +.+.+|.++..+.+ ++...+|+.++..+..+++.. ...-...+..++..+
T Consensus 120 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 197 (450)
T 2jdq_A 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL 197 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHH
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 6778899999999988742 35789999999984 223468999999999999866 333445567788888
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426 90 TKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 90 VRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
++.|.+.+. .++..+..+++.|+... .+....++ ..++.+|++.|......++..|+-+|..+....
T Consensus 198 ~~~l~~~~~--~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---- 265 (450)
T 2jdq_A 198 SWLLFVSDT--DVLADACWALSYLSDGP------NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD---- 265 (450)
T ss_dssp HHHTTCCCH--HHHHHHHHHHHHHTSSS------HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHccCCH--HHHHHHHHHHHHHHCCC------cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC----
Confidence 888887763 35666666666666331 11111222 237788999988777789999999999998752
Q ss_pred CCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426 169 ASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAI 241 (604)
Q Consensus 169 Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAA 241 (604)
++..+ .+.+.+..+|++++...+ +-+.+++.++..+........ ..+++..++.|. ..++..|++|+
T Consensus 266 --~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~ 339 (450)
T 2jdq_A 266 --DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ----TAEFRTRKEAA 339 (450)
T ss_dssp --HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----HSCHHHHHHHH
T ss_pred --hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----cCCHHHHHHHH
Confidence 22221 478889999997653333 333344444433322222211 246777888888 57999999999
Q ss_pred HHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHH
Q 007426 242 QMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKR 291 (604)
Q Consensus 242 eaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~ 291 (604)
.+|..++...++..+.... ..++..|-..=-++-..||..+.+||...=.
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999998653322222111 1233333333234567899988888875443
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.61 E-value=8e-07 Score=83.16 Aligned_cols=170 Identities=12% Similarity=0.158 Sum_probs=130.0
Q ss_pred CChHHHHHHhhhcCCchhHHHHHHHHHHHHhhc---CCCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426 5 LSPILRQELANLDKDADSRKSAMKALKSYVKDL---DSKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVHGANIV 79 (604)
Q Consensus 5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~L---d~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvHG~~ia 79 (604)
|.|-+.+.|+ ++|-..|+.|+.+|..+++.- ....+..++..|... +++...+|..++..++.||..-|..+.
T Consensus 16 l~~~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 16 MPKDFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp SCTTHHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred CCHHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4454555553 678899999999999999872 122333344333221 133456899999999999998899999
Q ss_pred ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHH
Q 007426 80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKA 159 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAA 159 (604)
||+..|+..|+.+|.|+.. .||+++..++.++..... +..++..|.++|.+++-.+...+.-+|..
T Consensus 94 ~~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~~------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKP--NVVTALREAIDAIYASTS------------LEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTSC------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999863 589999999999985421 45688889999998888899999999999
Q ss_pred HhccCCCCCCCHHHHHHHHHHHHHhhcCCcc
Q 007426 160 LVDSDNWRFASDEMVNKVCQNVAGALEEKST 190 (604)
Q Consensus 160 lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~ 190 (604)
+++..+........+..++|-+.++|+++.-
T Consensus 160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 160 ALTRTQPTALNKKLLKLLTTSLVKTLNEPDP 190 (242)
T ss_dssp HHTTCCGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHcCCCCccHHHHHHHHHHHHHHhcCCCh
Confidence 9887432223456778999999999987653
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.54 E-value=2.3e-06 Score=88.29 Aligned_cols=263 Identities=14% Similarity=0.084 Sum_probs=173.3
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCC
Q 007426 8 ILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANI 78 (604)
Q Consensus 8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~i 78 (604)
.+-+.|.. .|.+.+..|+..|..++.. +....+|.++..+.+ +...+++.++..|..|++.. +..-
T Consensus 177 ~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 177 LFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 33444442 3788999999999999875 346789999999986 33468999999999999866 3444
Q ss_pred cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHH
Q 007426 79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCL 157 (604)
Q Consensus 79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCL 157 (604)
...+..++..+++-|.+.+. .+|..+..+++.|+.. ..+....++. .++..|.+.|...+..++..|+-+|
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDT--ETLVDACWAISYLSDG------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCH--HHHHHHHHHHHHHHSS------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCC------CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 55666788888888887763 3576666777777632 1111222222 4678888888887778999999999
Q ss_pred HHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCC
Q 007426 158 KALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPG 230 (604)
Q Consensus 158 AAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ 230 (604)
..+...+ ++..+ .+.+.+..+|..+....+ +=+..++.|+..+...+.... ..+++..+++|.
T Consensus 324 ~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~---- 393 (530)
T 1wa5_B 324 GNIVTGN------DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---- 393 (530)
T ss_dssp HHHTTSC------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----
T ss_pred HHHHcCC------HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----
Confidence 9988642 22222 477889999997743332 223333344433332222211 235677788887
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCC--CchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426 231 EANSQKRLLAIQMLNFLMKSLDP--RSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKRIA 293 (604)
Q Consensus 231 ssDWq~RKAAAeaL~~la~~~d~--~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia 293 (604)
..++..|++|+.+|..|+...++ ..+.... ..+|..|...=.++-+.||..+..||...=...
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999865433 2221111 225555555545667889999888887654443
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.35 E-value=1.4e-05 Score=82.14 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=165.2
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTIT 90 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIV 90 (604)
|.+.+..|+..|-.++.. ++.+.+|+++..+.+. +...+++.++..|..|+...+......+..++..++
T Consensus 173 ~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~ 250 (528)
T 4b8j_A 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALA 250 (528)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 677888899999888754 2356899999999533 234689999999999998766555566777888899
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426 91 KTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA 169 (604)
Q Consensus 91 RRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A 169 (604)
+-|.+.+. .++..+..+++.|+.. ..+....++. .++.+|...|......++.-|+-+|..+...
T Consensus 251 ~lL~~~~~--~v~~~a~~aL~~l~~~------~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------ 316 (528)
T 4b8j_A 251 RLIHSNDE--EVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG------ 316 (528)
T ss_dssp HHTTCCCH--HHHHHHHHHHHHHTSS------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------
T ss_pred HHHCCCCH--HHHHHHHHHHHHHHcC------CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC------
Confidence 98887763 3566666666665522 1111112222 3778999999988888999999999999874
Q ss_pred CHHHHH-----HHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426 170 SDEMVN-----KVCQNVAGALEEK-STQTN-SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAI 241 (604)
Q Consensus 170 p~elv~-----rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAA 241 (604)
.++..+ .+.+.+..+|..+ +...+ .-..+++-|+..+...+.. ....+++..+++|. +.++..|+.|+
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~ 392 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ----TAEFDIKKEAA 392 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH----HSCHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh----cCCHHHHHHHH
Confidence 233222 3678888999876 43332 2233344444333222111 11235777888888 57999999999
Q ss_pred HHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHH
Q 007426 242 QMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAK 290 (604)
Q Consensus 242 eaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK 290 (604)
.+|..++...++..+.... ..+|..|-..=.++-..|+..+.++|..-=
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999998664332222111 235555555545566778887777766543
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.28 E-value=4.2e-06 Score=75.73 Aligned_cols=187 Identities=14% Similarity=0.221 Sum_probs=124.7
Q ss_pred CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
+++.+|.++..+.+.+ ..+|.+++..|+.+. . +..+..+++.|.|++ ..||.++..+++.+.
T Consensus 17 ~~~~~~~L~~~L~~~~---~~vR~~A~~~L~~~~----~------~~~~~~L~~~l~~~~--~~vr~~a~~aL~~~~--- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDS---YYVRRAAAYALGKIG----D------ERAVEPLIKALKDED--AWVRRAAADALGQIG--- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSC--HHHHHHHHHHHHHHC---
T ss_pred CHhHHHHHHHHHcCCC---HHHHHHHHHHHHHhC----C------ccHHHHHHHHHcCCC--HHHHHHHHHHHHhhC---
Confidence 6778999999887443 468888888877642 2 355666777888776 347887777666553
Q ss_pred CCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHH
Q 007426 118 IDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMG 197 (604)
Q Consensus 118 idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~ 197 (604)
+ .....+|.++|...+..+...|+.+|..+-+. +..+.+.++|++++... -..
T Consensus 79 -~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~v--r~~ 131 (211)
T 3ltm_A 79 -D------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFV--RIA 131 (211)
T ss_dssp -C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHH--HHH
T ss_pred -C------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHH--HHH
Confidence 1 13456778888877778898888888876331 23456677888765333 344
Q ss_pred HHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccc
Q 007426 198 LVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAY 277 (604)
Q Consensus 198 LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~ 277 (604)
++.+|..++. ...++..++.|+ ..||..|.+|+++|..+- + ..++..|+..-.|.-+.
T Consensus 132 a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~---~--------~~~~~~L~~~l~d~~~~ 189 (211)
T 3ltm_A 132 AAFALGEIGD-------ERAVEPLIKALK----DEDGWVRQSAADALGEIG---G--------ERVRAAMEKLAETGTGF 189 (211)
T ss_dssp HHHHHHHHCC-------GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHC---S--------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------hhHHHHHHHHHhCCCHH
Confidence 4555555542 123556667776 689999999999999862 1 23444444444477789
Q ss_pred hhHHHHHHHHHHHH
Q 007426 278 VKGASLEALQTAKR 291 (604)
Q Consensus 278 VR~am~eALq~wK~ 291 (604)
||.++.+||...+.
T Consensus 190 vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 190 ARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999876543
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.28 E-value=9.4e-06 Score=79.97 Aligned_cols=248 Identities=13% Similarity=0.119 Sum_probs=155.6
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst 88 (604)
|.+.+..|+..|..++.. .+.+.+|.|+..+.+. ...+|++++..|..++..... ...++ ..++..
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~ 153 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE---FEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPP 153 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHH
Confidence 567788899999888762 2367899999998753 346899999999999864211 00111 124556
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
+++-|.+.. +..+|..++.+++.|++... |.. ...++..++.+|.+.|......++.-|+-+|..+.+..+-
T Consensus 154 L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~-~~~----~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-- 225 (450)
T 2jdq_A 154 LLQLFSKQN-RLTMTRNAVWALSNLCRGKS-PPP----EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND-- 225 (450)
T ss_dssp HHHHTTSCC-CHHHHHHHHHHHHHHHCCSS-SCC----CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH--
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHhCCCC-CCC----CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH--
Confidence 666676432 23578899899998886531 211 1233466788889888877778899999999999875210
Q ss_pred CCHHHH-HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426 169 ASDEMV-NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLN 245 (604)
Q Consensus 169 Ap~elv-~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~ 245 (604)
....++ ..+.+.+..+|+++..... +-+..++.|+..+........ ..+++..+++|+ ..+|..|++|+.+|.
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS----SPKESIKKEACWTIS 301 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 001111 1378889999987654332 233444444444332211111 135777778887 679999999999999
Q ss_pred HHHhhcCCCchh-----hhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 246 FLMKSLDPRSIF-----SELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 246 ~la~~~d~~~L~-----se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
.|+...+ ..+. ..+..+++.|.. .-+.||..+..||.
T Consensus 302 ~l~~~~~-~~~~~~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 302 NITAGNR-AQIQTVIDANIFPALISILQT----AEFRTRKEAAWAIT 343 (450)
T ss_dssp HHTTSCH-HHHHHHHHTTHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHH
Confidence 9874221 1111 123456666664 34568877766664
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.28 E-value=7e-06 Score=84.73 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=157.6
Q ss_pred CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC---CCcccHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA---NIVPQIDSIMT 87 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~---~iaPhL~KIms 87 (604)
|.+.+..|+..|-.++..- +.+.+|.|+..+.+. ...+|+.++..|..|+..... .++ -..++.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~--~~~~l~ 218 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDYRDYVL--QCNAME 218 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTCHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccchHHHH--HcCcHH
Confidence 5667888999998887632 367899999999853 345899999999999853211 011 013456
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
.+++-|.+.+ ..++..+..+++.|++... |.. ...++..++.+|...|......++.-|+.||..+.+.
T Consensus 219 ~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~-~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---- 287 (530)
T 1wa5_B 219 PILGLFNSNK--PSLIRTATWTLSNLCRGKK-PQP----DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---- 287 (530)
T ss_dssp HHHHGGGSCC--HHHHHHHHHHHHHHHCCSS-SCC----CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHhccCC--HHHHHHHHHHHHHHhCCCC-CCC----cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----
Confidence 6777777744 3467777778888875421 211 2334556788899988888788999999999999875
Q ss_pred CCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 168 FASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 168 ~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
+++... .+++.+..+|+.+..... .-+.+++.++..++....... ..+++..+.+|. ..+|..|++|
T Consensus 288 --~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~vr~~A 361 (530)
T 1wa5_B 288 --PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS----SPKENIKKEA 361 (530)
T ss_dssp --CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHH
T ss_pred --CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc----CCCHHHHHHH
Confidence 333333 467889999987653332 223444444443332211111 135777778888 6799999999
Q ss_pred HHHHHHHHhhcCCCchh-----hhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 241 IQMLNFLMKSLDPRSIF-----SELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 241 AeaL~~la~~~d~~~L~-----se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
+.+|..|+... ...+. ..+..+++.|.. .-..||..+..||..
T Consensus 362 ~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~ 409 (530)
T 1wa5_B 362 CWTISNITAGN-TEQIQAVIDANLIPPLVKLLEV----AEYKTKKEACWAISN 409 (530)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHH----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence 99999987422 12221 123556666754 345677777777643
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.20 E-value=3.3e-05 Score=69.84 Aligned_cols=211 Identities=14% Similarity=0.160 Sum_probs=141.2
Q ss_pred CchhHHHHHHHHHHHHhhcC--------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426 19 DADSRKSAMKALKSYVKDLD--------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld--------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst 88 (604)
|.+.+..|+..|..++..-+ .+.+|.++..+.+.+ ..++.+++..+..|+..+... ..++ ..++..
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~ 90 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPDEA-IKAIVDAGGVEV 90 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHH
Confidence 67788889999988887432 467999999988654 458999999999988642211 1111 125667
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
+++-|.+++ ..+|..|..+++.|+..- .+....++. .++.+|++.|...+..++..|+-||..+...
T Consensus 91 l~~ll~~~~--~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~---- 158 (252)
T 4hxt_A 91 LVKLLTSTD--SEVQKEAARALANIASGP------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---- 158 (252)
T ss_dssp HHHHTTCSS--HHHHHHHHHHHHHHTTSC------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHcCCC--HHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----
Confidence 778787765 357888888888887421 111222222 3688899999888888999999999999874
Q ss_pred CCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 168 FASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 168 ~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
+++... .+.+.+..+|++++...+ .-+..++.|+..++.....-. ..+++..+++|. ++|+..|+.|
T Consensus 159 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~a 232 (252)
T 4hxt_A 159 --PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT----STDSEVQKEA 232 (252)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHH
T ss_pred --CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC----CCcHHHHHHH
Confidence 222222 377889999997654333 233344444443333221111 125677788888 6899999999
Q ss_pred HHHHHHHHhhc
Q 007426 241 IQMLNFLMKSL 251 (604)
Q Consensus 241 AeaL~~la~~~ 251 (604)
+.+|..|....
T Consensus 233 ~~~L~~l~~~~ 243 (252)
T 4hxt_A 233 QRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 99999987544
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.19 E-value=5.7e-06 Score=74.30 Aligned_cols=186 Identities=14% Similarity=0.220 Sum_probs=104.8
Q ss_pred hcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHh
Q 007426 36 DLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIAR 115 (604)
Q Consensus 36 ~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAr 115 (604)
.+++...|.|+..+.+.+. .+|.+++..|+.+. . +..+..+++.|.|++. .+|.++..+++.+.
T Consensus 10 ~~~~~~~~~~i~~L~~~~~---~vr~~A~~~L~~~~----~------~~~~~~L~~~l~~~~~--~vr~~a~~~L~~~~- 73 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSY---YVRRAAAYALGKIG----D------ERAVEPLIKALKDEDA--WVRRAAADALGQIG- 73 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCH---HHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHC-
T ss_pred ccCCcchHHHHHHhcCCCH---HHHHHHHHHHHhcC----C------hhHHHHHHHHHcCCCH--HHHHHHHHHHHhhC-
Confidence 3455567777777765443 46777777766542 1 2345556666766652 35666555554442
Q ss_pred hcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhH
Q 007426 116 YGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSH 195 (604)
Q Consensus 116 y~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAh 195 (604)
+ .....+|.++|...+..+...|+-+|..+-+. +..+.+.++|++++... -
T Consensus 74 ---~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~v--r 124 (201)
T 3ltj_A 74 ---D------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFV--R 124 (201)
T ss_dssp ---C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHH--H
T ss_pred ---C------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHH--H
Confidence 1 12445666677666666777777777665321 13344556666654222 2
Q ss_pred HHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCc
Q 007426 196 MGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQM 275 (604)
Q Consensus 196 l~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKV 275 (604)
..++.+|...+. ...++..++.|. ..||..|.+|+++|..+- + ...+..|...--|.-
T Consensus 125 ~~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~---~--------~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 125 IAAAFALGEIGD-------ERAVEPLIKALK----DEDGWVRQSAADALGEIG---G--------ERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHHHHHHTC-------GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHC---S--------HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------hhHHHHHHHHHhCCC
Confidence 344444444432 123455566666 568888888888888761 1 122333333334556
Q ss_pred cchhHHHHHHHHH
Q 007426 276 AYVKGASLEALQT 288 (604)
Q Consensus 276 k~VR~am~eALq~ 288 (604)
+.||.++.+||..
T Consensus 183 ~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 183 GFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788888877764
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.15 E-value=3.9e-05 Score=78.77 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=156.4
Q ss_pred chhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHHH
Q 007426 20 ADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTTI 89 (604)
Q Consensus 20 RDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImstI 89 (604)
.+.+..|+..|..++.. ++...||.|+..+.+. ...+|++++..|..|+..+.. ....+- .++..+
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~L 207 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPL 207 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHH
Confidence 67788899999988874 2346899999988863 346899999999999864321 111111 245567
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426 90 TKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA 169 (604)
Q Consensus 90 VRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A 169 (604)
++-|.+.. +..++..+..++..|+... |.. ...++..++.+|...|......++.-|+.||..+.+.
T Consensus 208 l~lL~~~~-~~~v~~~a~~~L~~L~~~~--~~~----~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~------ 274 (528)
T 4b8j_A 208 LAQLNEHT-KLSMLRNATWTLSNFCRGK--PQP----SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG------ 274 (528)
T ss_dssp HHTCCTTC-CHHHHHHHHHHHHHHHCSS--SCC----CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS------
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHcCC--CCC----cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC------
Confidence 77774332 2346777777888887542 221 2234456778888888887788999999999999875
Q ss_pred CHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCC-CHHHHHHHH
Q 007426 170 SDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEA-NSQKRLLAI 241 (604)
Q Consensus 170 p~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ss-DWq~RKAAA 241 (604)
+++..+ .+++.+..+|..++...+ .-+.+++.|+..+........ ..+++..+.+|. +. ++..|+.|+
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~v~~~A~ 350 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QNLKKSIKKEAC 350 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CCCcHHHHHHHH
Confidence 333322 368899999998753333 334444454443332222111 235777788888 56 999999999
Q ss_pred HHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 242 QMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 242 eaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
.+|..|+.. +...+.. .+...++.|+.- -..||..+..||..
T Consensus 351 ~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~n 397 (528)
T 4b8j_A 351 WTISNITAG-NKDQIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISN 397 (528)
T ss_dssp HHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 999998742 2221211 235566777653 34577766666543
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.14 E-value=3.2e-05 Score=69.98 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=141.8
Q ss_pred CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426 40 KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI 118 (604)
Q Consensus 40 dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i 118 (604)
+.||.++..+.+.+ ..++.+++..+..++..+.......+ ..++..+++-|.+++ ..+|..+..+++.|+..
T Consensus 2 ~~i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD---SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASG-- 74 (252)
T ss_dssp CHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcC--
Confidence 45888888887654 45799999999999876642211111 136777888888876 34688888888877732
Q ss_pred CCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hH
Q 007426 119 DPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SH 195 (604)
Q Consensus 119 dp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ah 195 (604)
..+....++. ..+.+|++.|......++.-|+.+|..+..... ..-..++. ...+.+..+|++...... .-
T Consensus 75 ----~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a 148 (252)
T 4hxt_A 75 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 148 (252)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred ----ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 1122222222 267889999988888899999999999986421 00111222 368889999997764443 23
Q ss_pred HHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCC
Q 007426 196 MGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSD 273 (604)
Q Consensus 196 l~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfD 273 (604)
+.+++.|+..++..... .-...++..+++|. +.++..|..|+.+|..|+.. ++....... ..++..|-..=-+
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC----CCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCC
Confidence 33444444433222111 11225777788888 68999999999999998742 222111111 2234444433334
Q ss_pred CccchhHHHHHHHHH
Q 007426 274 QMAYVKGASLEALQT 288 (604)
Q Consensus 274 KVk~VR~am~eALq~ 288 (604)
.-+.||..+..+|.-
T Consensus 224 ~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 224 TDSEVQKEAQRALEN 238 (252)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 556777777776654
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.13 E-value=1.8e-05 Score=72.67 Aligned_cols=208 Identities=14% Similarity=0.139 Sum_probs=135.8
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHH
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImst 88 (604)
|.+.+..|+..|..++.. ++.+.||.++..+.+.+ ..++.+++..+..++....... ..+- .++..
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~ 100 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQI-QAVIDAGALPA 100 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHH
Confidence 788999999999665432 25678999999998654 4589999999999986322111 1111 26777
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
+++-|.+++ ..+|..|..+++.|+.. .+.....++. .++.+|.+.|......++.-|+.||..+...
T Consensus 101 L~~lL~~~~--~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---- 168 (252)
T 4db8_A 101 LVQLLSSPN--EQILQEALWALSNIASG------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---- 168 (252)
T ss_dssp HHHGGGCSC--HHHHHHHHHHHHHHTTS------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHcCCC--HHHHHHHHHHHHHhhcC------CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----
Confidence 888888765 34788888888888632 1111122332 2778899999887778999999999999875
Q ss_pred CCCHHHH-----HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426 168 FASDEMV-----NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLA 240 (604)
Q Consensus 168 ~Ap~elv-----~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAA 240 (604)
+++.. ..+.+.+..+|++++...+ .-+..++.|+..++........ .+++..++.|. +.+...|+.|
T Consensus 169 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~A 242 (252)
T 4db8_A 169 --GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS----HENEKIQKEA 242 (252)
T ss_dssp --CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT----CSSSHHHHTH
T ss_pred --ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC----CCCHHHHHHH
Confidence 23322 2367889999998754333 2233344444333322111111 14555556665 7899999999
Q ss_pred HHHHHHHH
Q 007426 241 IQMLNFLM 248 (604)
Q Consensus 241 AeaL~~la 248 (604)
+.+|..|+
T Consensus 243 ~~~L~~l~ 250 (252)
T 4db8_A 243 QEALEKLQ 250 (252)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99998764
No 27
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.10 E-value=2.5e-05 Score=70.69 Aligned_cols=173 Identities=15% Similarity=0.178 Sum_probs=120.4
Q ss_pred cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426 17 DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS 96 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs 96 (604)
+.|++.|..|+..|..+- +++.+|.++..+.+. ...+|..++..|+.+. + +..+..+++.|.|+
T Consensus 30 ~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG---DERAVEPLIKALKDE---DAWVRRAAADALGQIG----D------ERAVEPLIKALKDE 93 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCS---CHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCC---CHHHHHHHHHHHHhhC----C------HHHHHHHHHHHcCC
Confidence 447778888888887764 467899999988754 3468999998887653 1 34566677788887
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHH
Q 007426 97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNK 176 (604)
Q Consensus 97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~r 176 (604)
+. .||.++..+++.+.. ...+.+|.+.|...+..|...|+.+|..+=+. +
T Consensus 94 ~~--~vr~~a~~aL~~~~~----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~ 143 (211)
T 3ltm_A 94 DG--WVRQSAAVALGQIGD----------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------R 143 (211)
T ss_dssp SH--HHHHHHHHHHHHHCC----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------G
T ss_pred CH--HHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------------H
Confidence 73 478888777766531 12456788888777778999999999887321 2
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 177 VCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 177 lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
..+.+..+|++++.. ....++.+|...+. ...+....+.|+ ..|+..|.+|+++|..+-
T Consensus 144 ~~~~L~~~l~d~~~~--vr~~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 144 AVEPLIKALKDEDGW--VRQSAADALGEIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp GHHHHHHHTTCSSHH--HHHHHHHHHHHHCS-------HHHHHHHHHHHH----HCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHhCc-------hhHHHHHHHHHh----CCCHHHHHHHHHHHHhcC
Confidence 345567788776532 23455556555543 334566677777 579999999999999864
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.06 E-value=0.00011 Score=69.24 Aligned_cols=212 Identities=12% Similarity=0.144 Sum_probs=137.5
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHh-hccCC
Q 007426 18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITK-TLASS 96 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVR-RLsDs 96 (604)
.|...|..|+..|-.+. +++.+|.++..+.+.+ ..+|..++..|+.+.. ....++.++..+.. -+.|+
T Consensus 35 ~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~d~~---~~vR~~A~~aL~~l~~-----~~~~~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRG---GQDAVRLAIEFCSDKN---YIRRDIGAFILGQIKI-----CKKCEDNVFNILNNMALNDK 103 (280)
T ss_dssp SSHHHHHHHHHHHHHHC---CHHHHHHHHHHHTCSS---HHHHHHHHHHHHHSCC-----CTTTHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHccC---CchHHHHHHHHHcCCC---HHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHhcCC
Confidence 36677888999998875 5667999998887543 4589988887765531 11234555555553 24666
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHH
Q 007426 97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNK 176 (604)
Q Consensus 97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~r 176 (604)
+. .||.++..+.+.+.... |. ....++.+|..+|...+..|...|+.+|..+-+. +
T Consensus 104 ~~--~vr~~a~~aL~~l~~~~--~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------------~ 159 (280)
T 1oyz_A 104 SA--CVRATAIESTAQRCKKN--PI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------------A 159 (280)
T ss_dssp CH--HHHHHHHHHHHHHHHHC--GG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------C
T ss_pred CH--HHHHHHHHHHHHHhccC--Cc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------------H
Confidence 53 47999888888887431 10 1234678888889888888999999998865431 1
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch
Q 007426 177 VCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 177 lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L 256 (604)
..+.+..+|+++...- -..++.+|...+. .....++..++.|. ..|+..|+.|+++|..+. ++.
T Consensus 160 ~~~~L~~~l~d~~~~v--r~~a~~aL~~~~~-----~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~---~~~-- 223 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDV--RNWAAFAININKY-----DNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRK---DKR-- 223 (280)
T ss_dssp CHHHHHHHHTCSSHHH--HHHHHHHHHHHTC-----CCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTT---CGG--
T ss_pred HHHHHHHHHcCCCHHH--HHHHHHHHHhhcc-----CcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhC---CHh--
Confidence 4455677888765332 2334444444421 12344666677777 689999999999998863 222
Q ss_pred hhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 257 FSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 257 ~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
-+..+++.|+. +.||..+.+||..
T Consensus 224 --~~~~L~~~l~d------~~vr~~a~~aL~~ 247 (280)
T 1oyz_A 224 --VLSVLCDELKK------NTVYDDIIEAAGE 247 (280)
T ss_dssp --GHHHHHHHHTS------SSCCHHHHHHHHH
T ss_pred --hHHHHHHHhcC------ccHHHHHHHHHHh
Confidence 34556666654 3389888777753
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.05 E-value=8.4e-05 Score=79.23 Aligned_cols=260 Identities=11% Similarity=0.130 Sum_probs=154.0
Q ss_pred hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCC-CcccH
Q 007426 7 PILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGAN-IVPQI 82 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~-iaPhL 82 (604)
|.+++.|. +.|+.-|+.|+..|-++.+ .+++.++ .|+..|..- .++...|+..++.+|..++.-.+.. ..+..
T Consensus 124 ~~l~~~L~--d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLK--DEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSS--CSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcC--CCChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 44555554 4467788999999999998 6787776 244443332 2334568999999999998877655 67777
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426 83 DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD 162 (604)
Q Consensus 83 ~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE 162 (604)
+..+..+++.|.+.+. -+-...+..|+.|... .. .-...++.+|...|.+.+..|...|+-|+..+.+
T Consensus 201 ~~~~~~Ll~~l~~~~~-----~~q~~il~~l~~l~~~--~~-----~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 201 PQNINKLLTALNECTE-----WGQIFILDCLSNYNPK--DD-----REAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHHHHHHTSCCC--SH-----HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCCCc-----hHHHHHHHHHHHhCCC--Ch-----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 7888888888877652 2344667777777531 11 1124567777778888888889988888888754
Q ss_pred cC--CCCCCCHHHHHHHHHHHHHhhcC-CccchhhHHHHHHHHHHhhhhHHHHh--------------------------
Q 007426 163 SD--NWRFASDEMVNKVCQNVAGALEE-KSTQTNSHMGLVMALAKHNALIVEAY-------------------------- 213 (604)
Q Consensus 163 s~--nwr~Ap~elv~rlc~Rv~kaL~~-ks~qtkAhl~LV~ALs~~n~~iiea~-------------------------- 213 (604)
.- +. ..-..++.++.+.+..++.. +..+..|+- .+.-+++..+.++..+
T Consensus 269 ~~~~~~-~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~-~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 269 LLPKDS-DYYNMLLKKLAPPLVTLLSGEPEVQYVALR-NINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp SCCBTT-BSHHHHHHHTHHHHHHHTTSCHHHHHHHHH-HHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred ccCCCH-HHHHHHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence 21 10 01111233444444444442 222222322 2233333333322211
Q ss_pred ----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 214 ----ARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 214 ----g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
...+++-..+.+. ..||..|+.|+.+|..++... ......|+..|=..=-|+...|+..+.. .-
T Consensus 347 ~~~nv~~iv~~L~~~l~----~~d~~~r~~~v~aI~~la~~~-----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~---~l 414 (591)
T 2vgl_B 347 SQANIAQVLAELKEYAT----EVDVDFVRKAVRAIGRCAIKV-----EQSAERCVSTLLDLIQTKVNYVVQEAIV---VI 414 (591)
T ss_dssp CSSTHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHTCCHHHHHHHHH---HH
T ss_pred ChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhC-----hhHHHHHHHHHHHHHcccchHHHHHHHH---HH
Confidence 1123444445555 679999999999999987432 2334556655544444667777765544 34
Q ss_pred HHhhhc
Q 007426 290 KRIAAE 295 (604)
Q Consensus 290 K~Ia~~ 295 (604)
+.|..+
T Consensus 415 ~~ii~~ 420 (591)
T 2vgl_B 415 RDIFRK 420 (591)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455443
No 30
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00014 Score=70.04 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=125.7
Q ss_pred CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC-----CCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 007426 38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG-----ANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPA 112 (604)
Q Consensus 38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG-----~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~A 112 (604)
|...|| |-.+|.+...- .|++++-=+..+..... +...+.+.+++..+-++|.|+. +.|.....+++.+
T Consensus 8 d~sklp-l~e~l~sk~WK---~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--~~v~~~al~~l~~ 81 (278)
T 4ffb_C 8 DYTTLP-LEERLTYKLWK---ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--VVAQEQAIVALNS 81 (278)
T ss_dssp ---CCC-HHHHTTCSSHH---HHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--HHHHHHHHHHHHH
T ss_pred hhhcCC-HHHhcccCcHH---HHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHH
Confidence 455688 66777755542 68888876655555443 3344557777788888998887 3466777778888
Q ss_pred HHhhcCCCCCccccchhhHHhhhchhHHh-hhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccc
Q 007426 113 IARYGIDPTTPEDKKRHIIHSLCKPLSDS-LLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ 191 (604)
Q Consensus 113 LAry~idp~~~~~~~~~ii~sl~KPL~Ea-L~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q 191 (604)
++..+.............+..++-+|+|= |+.....+-.-|--||-++++... ....++ .-+..+|+.++-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~---~~~~~~----e~l~~~l~~Knpk 154 (278)
T 4ffb_C 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT---SITQSV----ELVIPFFEKKLPK 154 (278)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS---SSHHHH----HHHGGGGGCSCHH
T ss_pred HHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC---cHHHHH----HHHHHHHhccCHH
Confidence 88654422222222223445566777774 555555553334445555666532 233333 4456788888766
Q ss_pred hh--hHHHHHHHHHHhhhhHHH--HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC-------chhhhH
Q 007426 192 TN--SHMGLVMALAKHNALIVE--AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR-------SIFSEL 260 (604)
Q Consensus 192 tk--Ahl~LV~ALs~~n~~iie--a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~-------~L~se~ 260 (604)
.+ +..-|...|...+..++. .....++..+..+|+ ..|-..|.+|.+++..++..++.. .+...+
T Consensus 155 v~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~----d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk 230 (278)
T 4ffb_C 155 LIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG----HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK 230 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT----CSSHHHHHHHHHHHHHHHTC-----------CTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC
Confidence 65 233344444444333222 222345556666777 789999999999999999888632 234445
Q ss_pred HHHHHHHHhccCCCcc
Q 007426 261 ELIIEGMENCQSDQMA 276 (604)
Q Consensus 261 ~S~I~~LE~cRfDKVk 276 (604)
..-++.||. .|+|++
T Consensus 231 p~~~k~le~-~f~k~~ 245 (278)
T 4ffb_C 231 PIQVKDLHK-LFAKVG 245 (278)
T ss_dssp HHHHHHHHH-HHSCCC
T ss_pred HHHHHHHHH-HHHhcC
Confidence 566666664 366664
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.03 E-value=8.2e-05 Score=71.98 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=133.1
Q ss_pred CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHH-HHhhcCCCCCccccchhhHHhhhchhHHhh-hcccchhhHHHH
Q 007426 77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPA-IARYGIDPTTPEDKKRHIIHSLCKPLSDSL-LGSQESLTAGAA 154 (604)
Q Consensus 77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~A-LAry~idp~~~~~~~~~ii~sl~KPL~EaL-~~qqe~vQsGAA 154 (604)
.|.+.||+ ..-..|.+++ ..-|.+-...+.. +..-+.+-.....+ +..+++-|...| ...|-.|...|+
T Consensus 12 ~i~~kl~~---~f~~~l~s~~--w~eRk~al~~L~~~~~~~~~~i~~~~~~----~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 12 TILDKLPK---DFQERITSSK--WKDRVEALEEFWDSVLSQTKKLKSTSQN----YSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp CCGGGSCT---THHHHHTCSS--HHHHHHHHHHHHHHTGGGCCCBCCTTCC----CHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hhhhhCCh---hHHHHhhcCC--HHHHHHHHHHHHHHHHhcCCccccCccc----HHHHHHHHHHHhccCCCHHHHHHHH
Confidence 46666666 5566676665 2244444444444 33111110000111 234455556677 455667889999
Q ss_pred HHHHHHhccCC-CCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHH-hhhhHHHHhHHHHHHHHHHHhcCCCCC
Q 007426 155 LCLKALVDSDN-WRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAK-HNALIVEAYARLLIQSGLRILNAGPGE 231 (604)
Q Consensus 155 LCLAAlVEs~n-wr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~-~n~~iiea~g~~Ll~S~l~~L~~~~~s 231 (604)
-||..+.+.-. ..|. ......+.|.+...|+++...-+ +....+-++.+ .++.....|...++....+.|+ +
T Consensus 83 ~al~~la~~l~~~~f~-~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~----~ 157 (249)
T 2qk1_A 83 QSVELICDKLKTPGFS-KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK----H 157 (249)
T ss_dssp HHHHHHHHHHCTTTSC-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT----C
T ss_pred HHHHHHHHhccccccc-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc----C
Confidence 99999987543 3332 15667799999999999763333 23333444444 3333322346778888888888 6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC--CchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426 232 ANSQKRLLAIQMLNFLMKSLDP--RSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295 (604)
Q Consensus 232 sDWq~RKAAAeaL~~la~~~d~--~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~ 295 (604)
.+|+.|.+|..+|..++..... ..+..++ ..++..|-.+=.|.-+.||+++.++|-+--.+.|+
T Consensus 158 k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 158 KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 7999999999999999977642 3455677 78888888888999999999999999987766554
No 32
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.94 E-value=6.8e-05 Score=67.26 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=117.9
Q ss_pred CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCC
Q 007426 19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAG 98 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdS 98 (604)
|++.|..|+..|..+- +++.+|.++..+.+.+ ..+|..++..|+.+. + +..+..+++.|.|++.
T Consensus 27 ~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~---~~vr~~a~~~L~~~~----~------~~~~~~L~~~l~d~~~ 90 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIG---DERAVEPLIKALKDED---AWVRRAAADALGQIG----D------ERAVEPLIKALKDEDG 90 (201)
T ss_dssp CHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCC---HHHHHHHHHHHHhhC----C------HHHHHHHHHHHcCCCH
Confidence 5677788888887764 3578999999886443 468999998887652 2 2456667777888763
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 007426 99 SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVC 178 (604)
Q Consensus 99 S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc 178 (604)
.||.++..+++.+. + .....+|.++|...+..|...|+.+|+.+-+. +..
T Consensus 91 --~vr~~a~~aL~~~~----~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~ 140 (201)
T 3ltj_A 91 --WVRQSAAVALGQIG----D------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------RAV 140 (201)
T ss_dssp --HHHHHHHHHHHHHC----C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------------GGH
T ss_pred --HHHHHHHHHHHHhC----c------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------------HHH
Confidence 46887777766653 1 12556677888777778999999999887431 244
Q ss_pred HHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 007426 179 QNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFL 247 (604)
Q Consensus 179 ~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~l 247 (604)
+.+..+|++++.. .-..++.+|...+. ...+....+.|+ ..+|..|.+|+++|..|
T Consensus 141 ~~L~~~l~d~~~~--vr~~A~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 141 EPLIKALKDEDGW--VRQSAADALGEIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHTTCSSHH--HHHHHHHHHHHHCS-------HHHHHHHHHHHH----HCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHH--HHHHHHHHHHHhCc-------hhHHHHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence 5567788876432 23555556666542 334566677777 57999999999999875
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.86 E-value=0.00035 Score=64.07 Aligned_cols=230 Identities=14% Similarity=0.142 Sum_probs=143.7
Q ss_pred CCChhHHHhhhccCCCCCCCchhhHHHHH-HHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426 39 SKAIPLFLAQVSETKENGSVSGEYTISLY-EVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 39 ~dtlP~FLscV~dtd~~~s~vRke~I~Ll-e~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry 116 (604)
...+|.|...|.+.+. .++.+++..+ ..++. +.......+ ..++..+++-|.+++ ..+|..+..+++.|+..
T Consensus 11 ~~~~~~~~~~L~s~~~---~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 11 GSELPQMTQQLNSDDM---QEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASG 84 (252)
T ss_dssp TCSHHHHHHHHHSSCS---SHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHcCCCH---HHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcC
Confidence 4468999999986654 4788888888 44554 322111111 135677888888776 34677777777777732
Q ss_pred cCCCCCccccchhhHHh-hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-
Q 007426 117 GIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN- 193 (604)
Q Consensus 117 ~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk- 193 (604)
..+....++.. .+.+|.+.|...+..++.-|+.+|..+.+.... .-..++. .+.+.+..+|++++....
T Consensus 85 ------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~ 156 (252)
T 4db8_A 85 ------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSSPNEQILQ 156 (252)
T ss_dssp ------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred ------CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch--HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 11222333322 678899999888888999999999999775210 0012222 378889999988754443
Q ss_pred hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhcc
Q 007426 194 SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQ 271 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cR 271 (604)
.-+.+++.|+..++..... .-..+++..+++|. +.+...|..|+.+|..|+.. ++....... ..++..|...=
T Consensus 157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG----CSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC----CCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHh
Confidence 2333444444433222111 11235777888888 67999999999999998632 222121111 23566666666
Q ss_pred CCCccchhHHHHHHHH
Q 007426 272 SDQMAYVKGASLEALQ 287 (604)
Q Consensus 272 fDKVk~VR~am~eALq 287 (604)
.+.-+.||..+..||.
T Consensus 232 ~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 232 SHENEKIQKEAQEALE 247 (252)
T ss_dssp TCSSSHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6677788888887774
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.79 E-value=0.0025 Score=66.62 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCC--CchhhHHHHHHHHHHHhCCC-CcccHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGS--VSGEYTISLYEVLARVHGAN-IVPQIDSIMT 87 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s--~vRke~I~Lle~LArvHG~~-iaPhL~KIms 87 (604)
|.+.+..|+..|-.|+.+ ++...+|+++..+...+.... ...+.+...+..+++-.... -.-.+..++.
T Consensus 175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp 254 (529)
T 3tpo_A 175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 254 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHH
Confidence 778888999999888753 357789999999986654321 23455555566555422111 2223467888
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426 88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW 166 (604)
Q Consensus 88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw 166 (604)
.+++-|.+.+.. ++..+..+++-|+.. ..+....++ ..++.+|.+.|.+....++.-|+.||..++..
T Consensus 255 ~L~~LL~~~~~~--v~~~a~~aL~~l~~~------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--- 323 (529)
T 3tpo_A 255 TLVRLLHHNDPE--VLADSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--- 323 (529)
T ss_dssp HHHHHTTSSCHH--HHHHHHHHHHHHHSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHhcCCcHH--HHHHHHHHHHHhhhh------hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc---
Confidence 889988877642 333322333333311 112222222 23778899999998889999999999998864
Q ss_pred CCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007426 167 RFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLL 239 (604)
Q Consensus 167 r~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKA 239 (604)
+++... .+.+.+..+|+++....+ .-...++-|+..+...... .-..+++..+..|. ++++..|+.
T Consensus 324 ---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~----~~~~~v~~~ 396 (529)
T 3tpo_A 324 ---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS----KADFKTQKA 396 (529)
T ss_dssp ---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH----SSCHHHHHH
T ss_pred ---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc----CCCHHHHHH
Confidence 333322 255668888887654332 1222222333323221111 11235777888888 789999999
Q ss_pred HHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 240 AIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 240 AAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
|+-+|.-++...+.+.+.... ..+|..|=..=..+=..|+..+.+||..-
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999987655433222111 12333332222233355666777776543
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.67 E-value=0.0017 Score=67.86 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCC--CchhhHHHHHHHHHHHhCC-CCcccHHHHH
Q 007426 18 KDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGS--VSGEYTISLYEVLARVHGA-NIVPQIDSIM 86 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s--~vRke~I~Lle~LArvHG~-~iaPhL~KIm 86 (604)
.|.+.+..|+..|-.|+.+ ++...+|+++..+...+.... ...+.+...+..+++-... .-.-.+..++
T Consensus 155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 234 (510)
T 3ul1_B 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 3788889999999888753 257789999999986643321 2345566666666652211 1222346788
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426 87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDN 165 (604)
Q Consensus 87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n 165 (604)
..+++-|.+.+. .++..+..++..|+.. ..+....++. .++.+|.+.|...+..++.-|+.||..++..
T Consensus 235 p~L~~LL~~~~~--~v~~~A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~-- 304 (510)
T 3ul1_B 235 PTLVRLLHHNDP--EVLADSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-- 304 (510)
T ss_dssp HHHHHHTTCSCH--HHHHHHHHHHHHHTSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHHhhc------hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--
Confidence 888998887763 2343333344333311 1122222222 3778899999998889999999999998764
Q ss_pred CCCCCHHHHHH-----HHHHHHHhhcCCccchhhHHHHHHHHHHh---hhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHH
Q 007426 166 WRFASDEMVNK-----VCQNVAGALEEKSTQTNSHMGLVMALAKH---NALIVEA-YARLLIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 166 wr~Ap~elv~r-----lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~---n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~ 236 (604)
+++.... +.+.+..+|+++....+ -..+.+|+.. +...... .-..+++..+++|. ++++..
T Consensus 305 ----~~~~~~~i~~~g~l~~L~~LL~~~~~~v~--~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~----~~~~~v 374 (510)
T 3ul1_B 305 ----TDEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS----KADFKT 374 (510)
T ss_dssp ----CHHHHHHHHHTTGGGGCC-CTTCSSHHHH--HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----SSCHHH
T ss_pred ----CHHHHHHHhhccchHHHHHHhcCCCHHHH--HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc----CCCHHH
Confidence 3333222 44556677776543322 2233333333 2211111 11135777888888 789999
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 237 RLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
|+.|+.+|.-++...+...+.... ..+|..|-+.=..+=..|+..+.+||..
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999987654432222111 2244444333333445566677666654
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.63 E-value=0.00055 Score=61.26 Aligned_cols=190 Identities=12% Similarity=0.076 Sum_probs=116.6
Q ss_pred CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 39 SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 39 ~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
.+..++.|..+.... +..++.+++..+..++..........+ ...+..+++-|.+++. .+|..+..+++.|+..
T Consensus 10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~- 84 (210)
T 4db6_A 10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASG- 84 (210)
T ss_dssp ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTS-
T ss_pred ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcC-
Confidence 334455555555332 246899999999998853322111111 1356778888887753 4677777777777632
Q ss_pred CCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHH----HH-HHHHHHHHhhcCCccc
Q 007426 118 IDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEM----VN-KVCQNVAGALEEKSTQ 191 (604)
Q Consensus 118 idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~el----v~-rlc~Rv~kaL~~ks~q 191 (604)
..+....++ ...+.+|++.|...+..++..|+.+|..+... .++. +. .+.+.+..+|++++..
T Consensus 85 -----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~ll~~~~~~ 153 (210)
T 4db6_A 85 -----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG------GNEQIQAVIDAGALPALVQLLSSPNEQ 153 (210)
T ss_dssp -----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------CHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred -----CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC------CHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 111222222 22678999999888888999999999999874 2222 22 3678899999976544
Q ss_pred hh-hHHHHHHHHHHhhhhHHH-HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 192 TN-SHMGLVMALAKHNALIVE-AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 192 tk-Ahl~LV~ALs~~n~~iie-a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
.+ .-+..+..|+..++.... ..-...++..+++|. +.+...|+.|+.+|..|+
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS----HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHh
Confidence 43 223333444443222111 111125677778887 689999999999999875
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.61 E-value=0.0019 Score=67.46 Aligned_cols=251 Identities=11% Similarity=0.086 Sum_probs=146.8
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426 9 LRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP 80 (604)
Q Consensus 9 ~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP 80 (604)
+-+.|..-+ +++-+.-|+..|-.|+.. .+...||.|+..|.+.+ ..++++|+..|.-||.-. |
T Consensus 105 LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~---~~v~e~A~~aL~nLa~d~-----~ 175 (510)
T 3ul1_B 105 FVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGDG-----S 175 (510)
T ss_dssp HHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTC-----H
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCC-----H
Confidence 334444333 456666788888888742 25678999999997543 358999999999998421 2
Q ss_pred cHHH------HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC--CCCccccchhhHHhhhchhHHhhhcccchhhHH
Q 007426 81 QIDS------IMTTITKTLASSAGSFPLQQACSRVVPAIARYGID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAG 152 (604)
Q Consensus 81 hL~K------ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsG 152 (604)
.... .+..++.-|.+++.+...-.....++.+|+..+.. +.. .-..+..++.+|...|..+...++.-
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~----~~~~~~~~lp~L~~LL~~~~~~v~~~ 251 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP----PLDAVEQILPTLVRLLHHNDPEVLAD 251 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC----CHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh----HHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence 2222 24456777776653321112233344455433321 211 11223456677888888888889999
Q ss_pred HHHHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHH-HHHHHHh
Q 007426 153 AALCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLI-QSGLRIL 225 (604)
Q Consensus 153 AALCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll-~S~l~~L 225 (604)
|+.||..+.+. +++..+ .+++++..+|..++...+ .-+..++.++..+.... ..++ ..++..|
T Consensus 252 A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~----~~i~~~g~l~~L 321 (510)
T 3ul1_B 252 SCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT----QKVIDAGALAVF 321 (510)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTGGGGC
T ss_pred HHHHHHHHhhc------hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHH----HHHhhccchHHH
Confidence 99999999885 333222 378999999997654443 23344444444332211 1112 2234455
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 226 NAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 226 ~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
-.-+.+.+...|+.|+-+|..|+... ...... -+..++..|.+. -..||..+..||-
T Consensus 322 ~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 322 PSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKA----DFKTQKEAAWAIT 383 (510)
T ss_dssp C-CTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence 55555889999999999999986432 111111 124455555543 3457776666654
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.61 E-value=0.0013 Score=68.84 Aligned_cols=248 Identities=12% Similarity=0.107 Sum_probs=148.8
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426 8 ILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV 79 (604)
Q Consensus 8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia 79 (604)
.+-+.|.+-+ +++.+.-|+..|-.|+.. .+...||.|+..+.+.+ ..++++|+..|+-||.-.
T Consensus 123 ~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~---~~v~e~A~~aL~nLa~~~----- 193 (529)
T 3tpo_A 123 KFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGAG----- 193 (529)
T ss_dssp HHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhccC-----
Confidence 3344454444 677777788888888752 24678999999887544 358999999999988422
Q ss_pred ccHHH------HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC--CCCccccchhhHHhhhchhHHhhhcccchhhH
Q 007426 80 PQIDS------IMTTITKTLASSAGSFPLQQACSRVVPAIARYGID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTA 151 (604)
Q Consensus 80 PhL~K------ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQs 151 (604)
|.... ++..++.-|.+++.+...-..-..++.+|+..+.. |... -..+..++.+|...|......++.
T Consensus 194 ~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~~~~~~lp~L~~LL~~~~~~v~~ 269 (529)
T 3tpo_A 194 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP----LDAVEQILPTLVRLLHHNDPEVLA 269 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC----HHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh----HHHHhhHHHHHHHHhcCCcHHHHH
Confidence 22222 24556777776653321112223344445433321 2221 122344566777777777788999
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh----HHHHhHHHHHHHH
Q 007426 152 GAALCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL----IVEAYARLLIQSG 221 (604)
Q Consensus 152 GAALCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~----iiea~g~~Ll~S~ 221 (604)
-|+.||..+.+. +++..+ .+++++..+|..++.... .-+..++.++..+.. ++..+ .++..
T Consensus 270 ~a~~aL~~l~~~------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g---~l~~L 340 (529)
T 3tpo_A 270 DSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVF 340 (529)
T ss_dssp HHHHHHHHHHSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGH
T ss_pred HHHHHHHHhhhh------hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc---cHHHH
Confidence 999999999985 343322 378999999997765443 344555555554432 22222 34555
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 222 LRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 222 l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
..+|. +.+...|+.|+-+|..|+.... ..... -+..++..|.+- -..||..+..||
T Consensus 341 ~~LL~----~~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL 401 (529)
T 3tpo_A 341 PSLLT----NPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAI 401 (529)
T ss_dssp HHHTT----CSSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHH
T ss_pred HHHHc----CCCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHH
Confidence 66676 7899999999999999875321 11111 124455555543 345666665555
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.47 E-value=0.0046 Score=58.16 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=125.3
Q ss_pred CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
+..+++.++..+.+.+ ..+|..++..|+.+. -+..+..+++.|.|++. .+|.+++.+.+.+.
T Consensus 21 ~~~~i~~L~~~L~~~~---~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~--~vR~~A~~aL~~l~--- 82 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN---SLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNY--IRRDIGAFILGQIK--- 82 (280)
T ss_dssp HTSCHHHHHHHTTCSS---HHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSH--HHHHHHHHHHHHSC---
T ss_pred HHhhHHHHHHHHHcCC---HHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCH--HHHHHHHHHHHHhc---
Confidence 4568999999997543 458999988887764 15678888888888874 46777766655443
Q ss_pred CCCCCccccchhhHHhhhchhHHh-hhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHH
Q 007426 118 IDPTTPEDKKRHIIHSLCKPLSDS-LLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHM 196 (604)
Q Consensus 118 idp~~~~~~~~~ii~sl~KPL~Ea-L~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl 196 (604)
..+. .+..+..-|.+. +.+++..|...|+-+|..+-... + ....++.+.+.++|++++... -.
T Consensus 83 ~~~~--------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----~-~~~~~~~~~L~~~l~d~~~~v--R~ 146 (280)
T 1oyz_A 83 ICKK--------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----P-IYSPKIVEQSQITAFDKSTNV--RR 146 (280)
T ss_dssp CCTT--------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----G-GGHHHHHHHHHHHTTCSCHHH--HH
T ss_pred cccc--------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----C-cccHHHHHHHHHHhhCCCHHH--HH
Confidence 1111 122233334333 34455568999999999886532 1 112356677888898775322 34
Q ss_pred HHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCcc
Q 007426 197 GLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMA 276 (604)
Q Consensus 197 ~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk 276 (604)
..+.+|...+. ...++..++.|. ..||..|.+|+.+|..+- ..+ ..++..|-..=.|.-+
T Consensus 147 ~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~-~~~--------~~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 147 ATAFAISVIND-------KATIPLLINLLK----DPNGDVRNWAAFAININK-YDN--------SDIRDCFVEMLQDKNE 206 (280)
T ss_dssp HHHHHHHTC----------CCHHHHHHHHT----CSSHHHHHHHHHHHHHHT-CCC--------HHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhcCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHhhc-cCc--------HHHHHHHHHHhcCCCH
Confidence 45555555432 124566677787 689999999999998862 111 2334444444457789
Q ss_pred chhHHHHHHHHH
Q 007426 277 YVKGASLEALQT 288 (604)
Q Consensus 277 ~VR~am~eALq~ 288 (604)
.||..+.+||..
T Consensus 207 ~vR~~A~~aL~~ 218 (280)
T 1oyz_A 207 EVRIEAIIGLSY 218 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888854
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.45 E-value=0.0048 Score=55.11 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=112.7
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
+++-|.+++. .+|..+..+++.|+.. ..+....++. ..+.+|.+.|...+..++..|+.||..+...+.
T Consensus 17 l~~LL~s~~~--~v~~~a~~~L~~l~~~------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-- 86 (210)
T 4db6_A 17 MVQQLNSPDQ--QELQSALRKLSQIASG------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-- 86 (210)
T ss_dssp HHHHTTCSCH--HHHHHHHHHHHHHHTS------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHhcCCCH--HHHHHHHHHHHHHHcC------CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--
Confidence 4444566653 4677777777777733 1122222222 367889999988888899999999999985311
Q ss_pred CCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007426 168 FASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRILNAGPGEANSQKRLLAIQML 244 (604)
Q Consensus 168 ~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL 244 (604)
..-..++. ...+.+..+|+++....+ .-..+++.|+..+......- -..+++..++.|+ ++|...|+.|+.+|
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~aL 162 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWAL 162 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 00011221 266889999998764443 22334444443333221111 1125778888888 67999999999999
Q ss_pred HHHHhhcCCCchhhh-HHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 245 NFLMKSLDPRSIFSE-LELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 245 ~~la~~~d~~~L~se-~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
..|+...+ ...... ...++..|...-.+.-+.||+.+..||..
T Consensus 163 ~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 163 SNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99874321 111111 13356666666667788899888887754
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.42 E-value=0.00061 Score=73.42 Aligned_cols=247 Identities=10% Similarity=0.115 Sum_probs=140.1
Q ss_pred CChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426 5 LSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID 83 (604)
Q Consensus 5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~ 83 (604)
+-|.+++.|.. .++.-|+.|+..|-++.+ .+|+.++.|+..|.+- .+....|.-.++.+|..++..+++. ..++.
T Consensus 143 l~~~l~~~L~~--~~~~VRk~A~~al~~l~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~ 218 (618)
T 1w63_A 143 LAGEVEKLLKT--SNSYLRKKAALCAVHVIR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFR 218 (618)
T ss_dssp HHHHHHHHHHS--CCHHHHHHHHHHHHHHHH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHH
Confidence 34566666654 478888999999999988 5788888888877765 3334467888999999887544331 12333
Q ss_pred HHHHHHHhhccCC-------------CCChhhHHHHHHHHHHHHhhcC-CCCCccccchhhHHhhhchhHHhh------h
Q 007426 84 SIMTTITKTLASS-------------AGSFPLQQACSRVVPAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSL------L 143 (604)
Q Consensus 84 KImstIVRRLsDs-------------dSS~~vR~AC~kvv~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL------~ 143 (604)
+++..+++.|.+- ..+.-+|.. ++..|..|+. +|. .. ..+...|...+ -
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~---il~~L~~l~~~~~~----~~----~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR---ILRLLRILGRNDDD----SS----EAMNDILAQVATNTETSK 287 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH---HHHHHHHHTTTCHH----HH----HTTHHHHHHHHHTSCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH---HHHHHHHhCCCCHH----HH----HHHHHHHHHHHhcccccc
Confidence 3344444443320 011124444 4455555543 221 01 11222222222 1
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHH
Q 007426 144 GSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGL 222 (604)
Q Consensus 144 ~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l 222 (604)
+.+..|...|+-|+..+ . ...++.......+.++|.++....+ +-|..+..+++..+..+..+ +...+
T Consensus 288 ~~~~aV~~ea~~~i~~l-~------~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~ 356 (618)
T 1w63_A 288 NVGNAILYETVLTIMDI-K------SESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIV 356 (618)
T ss_dssp THHHHHHHHHHHHHHHS-C------CCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHH
T ss_pred chHHHHHHHHHHHHHhc-C------CCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHH
Confidence 12335666666666652 2 1345555566667777875433333 23344455566666665554 45667
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 223 RILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 223 ~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
.||. ..|...|+.|.+.|..+... ..+..-....++.++.. | ..+|..+.+||-.
T Consensus 357 ~~l~----d~d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~--d--~e~r~~~v~~I~~ 411 (618)
T 1w63_A 357 DCLK----DLDVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSC--E--PEFKADCASGIFL 411 (618)
T ss_dssp HGGG----SSCHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHC--C--HHHHHHHHHHHHH
T ss_pred HHcc----CCChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHH
Confidence 7888 68999999999999887532 23444445566666642 2 4566666655543
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.40 E-value=0.0074 Score=64.34 Aligned_cols=263 Identities=14% Similarity=0.147 Sum_probs=146.8
Q ss_pred CCCCCChHHHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426 1 MGRCLSPILRQELANLD-KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANI 78 (604)
Q Consensus 1 mgr~lsp~~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~i 78 (604)
+|...+.++-+-+.-+. +|..-++++.-.|+.+++. +++.+...++.+... .++...+|.-+|+ +|+..+...
T Consensus 43 ~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~~n~l~kdL~~~n~~ir~~AL~---~L~~i~~~~- 117 (591)
T 2vgl_B 43 VGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMAIMAVNSFVKDCEDPNPLIRALAVR---TMGCIRVDK- 117 (591)
T ss_dssp TTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHHHTTHHHHGGGSSSSSHHHHHHHHH---HHHTCCSGG-
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHcCChHH-
Confidence 46777777666555442 3555688898899988884 333333333333211 2333456766654 444444322
Q ss_pred cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHH
Q 007426 79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLK 158 (604)
Q Consensus 79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLA 158 (604)
.++-++..|.+-|.|++. .||.+.+.++..+.+. +|..-.+ ..+...|.+.|..++..|+.+|+.+|.
T Consensus 118 --~~~~l~~~l~~~L~d~~~--~VRk~A~~al~~i~~~--~p~~~~~------~~~~~~l~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 118 --ITEYLCEPLRKCLKDEDP--YVRKTAAVCVAKLHDI--NAQMVED------QGFLDSLRDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp --GHHHHHHHHHHHSSCSCH--HHHHHHHHHHHHHHHS--SCCCHHH------HHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHHhh--Chhhccc------ccHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 334456667777787753 4798888888888763 3332100 135666777777666689999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426 159 ALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL 238 (604)
Q Consensus 159 AlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK 238 (604)
.+.+.+.- .+--++......++.+.|.+.+ .-+...++..|....+.- +.....+++....+|+ +.|+..|.
T Consensus 186 ~i~~~~~~-~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~----~~~~~V~~ 257 (591)
T 2vgl_B 186 EISESHPN-SNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKD-DREAQSICERVTPRLS----HANSAVVL 257 (591)
T ss_dssp HHTTSCCS-CCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSC----SSTTHHHH
T ss_pred HHHhhCCC-ccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHc----CCChHHHH
Confidence 98875421 0001122233334444444322 124455556666655322 1223345565556665 78999999
Q ss_pred HHHHHHHHHHhhc--CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 239 LAIQMLNFLMKSL--DPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 239 AAAeaL~~la~~~--d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
+|+.+|..+.... ++..+..-...++..|=..- ++=+.||-++.++|..-
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i 309 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLI 309 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHH
Confidence 9999998875322 22333321122222111111 23468888888887543
No 43
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.39 E-value=0.0044 Score=69.41 Aligned_cols=246 Identities=11% Similarity=0.130 Sum_probs=154.2
Q ss_pred Cchh-HHHHHHHHHHHHhhcCCCChhHHHhhhccC------C-CCCCCchhhHHHHHHHHHHH-hCC--CCcc-----cH
Q 007426 19 DADS-RKSAMKALKSYVKDLDSKAIPLFLAQVSET------K-ENGSVSGEYTISLYEVLARV-HGA--NIVP-----QI 82 (604)
Q Consensus 19 DRDT-~~iA~~eLesiak~Ld~dtlP~FLscV~dt------d-~~~s~vRke~I~Lle~LArv-HG~--~iaP-----hL 82 (604)
|-+| |..|..-|+.+++.+....+|.++.-|... + .+.-..|+=+|.+++.+|.. -+. .+.. .+
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 3334 556777888888888755566665544221 1 11123577789999999742 111 1111 45
Q ss_pred HHH-HHHHHhhccCCCC-ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426 83 DSI-MTTITKTLASSAG-SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL 160 (604)
Q Consensus 83 ~KI-mstIVRRLsDsdS-S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl 160 (604)
..+ +..|+-.|.|+++ ...||.++..+++.++..+. .+.+..++.-|+..|...+..|+..||.||...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---------KAQLIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 554 4457777777742 45589988888888876531 123455556666677666677899999999999
Q ss_pred hccCC------CCCCCH---HHHHHHHHHHHHhhcCCc-----cchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHh
Q 007426 161 VDSDN------WRFASD---EMVNKVCQNVAGALEEKS-----TQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRIL 225 (604)
Q Consensus 161 VEs~n------wr~Ap~---elv~rlc~Rv~kaL~~ks-----~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L 225 (604)
++... |.+... +.+..+..++..+|+..+ ...+ ..+..++.++...+.-+.+|...+++....+|
T Consensus 524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l 603 (960)
T 1wa5_C 524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV 603 (960)
T ss_dssp TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH
T ss_pred HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88421 333233 445678888888888741 1122 56677777666665566778888888888777
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHHhhcCCCchhhhHH----HHHHHHHhccCC
Q 007426 226 NAGP-GEANSQKRLLAIQMLNFLMKSLDPRSIFSELE----LIIEGMENCQSD 273 (604)
Q Consensus 226 ~~~~-~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~----S~I~~LE~cRfD 273 (604)
.... ..+|...+.-+.++|..|+...++..+..... .+..+|+++-.|
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~ 656 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE 656 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh
Confidence 6432 24577888778999999987765544444433 344667765444
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.39 E-value=0.0033 Score=62.87 Aligned_cols=183 Identities=10% Similarity=0.134 Sum_probs=120.5
Q ss_pred HHHHHHhhhcCCc--------------hhHHHHHHHHHHHHhhcC-------CCChhHHHh-hhccCCCCCCCchhhHHH
Q 007426 8 ILRQELANLDKDA--------------DSRKSAMKALKSYVKDLD-------SKAIPLFLA-QVSETKENGSVSGEYTIS 65 (604)
Q Consensus 8 ~~rqeL~KLs~DR--------------DT~~iA~~eLesiak~Ld-------~dtlP~FLs-cV~dtd~~~s~vRke~I~ 65 (604)
.+|..|..|. |+ +.+..|+..|..+++++| ...+|+|+. +|.++ ...+|++++.
T Consensus 29 ~mk~~l~vl~-~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~---~~~vr~~Aa~ 104 (296)
T 1xqr_A 29 QMKSCLRVLS-QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG---AAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHH-SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS---SHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC---CHHHHHHHHH
Confidence 4678888888 65 567789999999998775 577999999 77643 3468999999
Q ss_pred HHHHHHHHhCC---CCcccHHHHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHH
Q 007426 66 LYEVLARVHGA---NIVPQIDSIMTTITKTLA-SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSD 140 (604)
Q Consensus 66 Lle~LArvHG~---~iaPhL~KImstIVRRLs-DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~E 140 (604)
.++.++.-... .++- ...+..+++-|+ +++ ..+|..+.-+++.|++.- + .....++ ...+.||..
T Consensus 105 ~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~LL~~~~~--~~v~~~A~~ALsnl~~~~--~----~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 105 LIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDAC--DTVRVKALFAISCLVREQ--E----AGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHTTC--H----HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH--CCCHHHHHHHHccCCC--HHHHHHHHHHHHHHHcCC--c----HHHHHHHHCCCHHHHHH
Confidence 99999853210 0110 023444555554 333 336777777777776531 1 1111222 236779999
Q ss_pred hhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH--HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh
Q 007426 141 SLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN--KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA 207 (604)
Q Consensus 141 aL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~--rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~ 207 (604)
.|......++.-||.+|..+...++ .-...+- .+++.++.+|+.+..... .-+..++.|++.+.
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~~~---~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVGHP---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCh---HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 9988777899999999999987632 1223333 389999999998766655 34455556665543
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.29 E-value=0.0046 Score=67.23 Aligned_cols=233 Identities=11% Similarity=0.134 Sum_probs=154.3
Q ss_pred cCCchhHHHHHHHHHHHHhhcC-----CCChhHHHhhhc-cCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007426 17 DKDADSRKSAMKALKSYVKDLD-----SKAIPLFLAQVS-ETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTIT 90 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~Ld-----~dtlP~FLscV~-dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIV 90 (604)
+.|++.+-+|+..|..++..-. ..-.+.|+.|+. |.| ..+|+.+|.|+-.++... -+..||..+.
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d---~~Ir~~aL~lL~~l~~~~------Nv~~Iv~eL~ 410 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD---VSVRQRAVDLLYAMCDRS------NAQQIVAEML 410 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCHH------HHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHHcChh------hHHHHHHHHH
Confidence 4689999999999999987531 134677888887 554 358999999998887543 3677777777
Q ss_pred hhccCCCCChhhHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426 91 KTLASSAGSFPLQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA 169 (604)
Q Consensus 91 RRLsDsdSS~~vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A 169 (604)
.-|.+.|.. .|...+.+++.+| +|..+ ...++.-|.+-|....+.+..-++-.+..+|...
T Consensus 411 ~yl~~~d~~--~~~~~v~~I~~la~k~~~~-----------~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~----- 472 (621)
T 2vgl_A 411 SYLETADYS--IREEIVLKVAILAEKYAVD-----------YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR----- 472 (621)
T ss_dssp HHHHHCCHH--HHHHHHHHHHHHHHHHCSS-----------THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG-----
T ss_pred HHHHhcCHH--HHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC-----
Confidence 777776643 5788889999999 55321 1456666777777666666655666667777642
Q ss_pred CHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHH-------HHHHHhcCCCCCCCHHHHHHHHH
Q 007426 170 SDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQ-------SGLRILNAGPGEANSQKRLLAIQ 242 (604)
Q Consensus 170 p~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~-------S~l~~L~~~~~ssDWq~RKAAAe 242 (604)
| ++-...+.+++..|+++..++. +.++..-+++-||..+.. -.++.|-......+..+|-.+..
T Consensus 473 ~-~~~~~~~~~l~~~l~~~~~~~~--------li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lt 543 (621)
T 2vgl_A 473 D-DVQGYAAKTVFEALQAPACHEN--------LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLS 543 (621)
T ss_dssp C-SCHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHcCccchHH--------HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 1 1112245566778887753321 123333455666654332 12333332233678999998888
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhccC--CCccchhHHHHHHHHHHHHhh
Q 007426 243 MLNFLMKSLDPRSIFSELELIIEGMENCQS--DQMAYVKGASLEALQTAKRIA 293 (604)
Q Consensus 243 aL~~la~~~d~~~L~se~~S~I~~LE~cRf--DKVk~VR~am~eALq~wK~Ia 293 (604)
++.++.... .+....+..+|+.|.. |.=..||+=+ .++|+.+.
T Consensus 544 a~~Kl~~~~-----p~~~~~i~~~l~~~~~~~~~d~evrdRA---~~y~~Ll~ 588 (621)
T 2vgl_A 544 TYIKFVNLF-----PEVKATIQDVLRSDSQLKNADVELQQRA---VEYLRLST 588 (621)
T ss_dssp HHHHHHHHC-----GGGHHHHHHHHSSHHHHSCSSHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHC-----hHHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHHHc
Confidence 888876533 2235779999999998 9999999855 55666664
No 46
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.23 E-value=0.0056 Score=68.05 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccC------CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET------KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS 96 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt------d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs 96 (604)
|+.+.+-|+.++..+..+.++.++.-|... +.+.-..++-+|..|+.+++.=.....|+|++||. ++-.|...
T Consensus 438 R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~ 516 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYE 516 (971)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCcc
Confidence 345666777777766655566666544332 11222457778888888876544455799999999 66667633
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHH---H
Q 007426 97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDE---M 173 (604)
Q Consensus 97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~e---l 173 (604)
|....||.++..+++.++.++.+.. ..+..++.-|+.+| . ..|+.-||.++..+++.. ..+ .
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~-------~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~-----~~~l~p~ 581 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENP-------AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC-----QLQLKPY 581 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC-----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH-----HHhcccc
Confidence 3345689988899999998765311 23455666677777 2 678999999999999862 333 3
Q ss_pred HHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHH
Q 007426 174 VNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPGEA--NSQKRLLAIQMLNFL 247 (604)
Q Consensus 174 v~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~ss--DWq~RKAAAeaL~~l 247 (604)
+..+...+..+|.++....+ ..+..++.++...+ .-..+|...++.-.++.|...+... +=..+..+++.|..|
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 44677778888887543333 45566666555322 3334455555444444333211121 222455555555444
Q ss_pred H
Q 007426 248 M 248 (604)
Q Consensus 248 a 248 (604)
.
T Consensus 662 ~ 662 (971)
T 2x1g_F 662 S 662 (971)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.19 E-value=0.015 Score=64.50 Aligned_cols=243 Identities=13% Similarity=0.061 Sum_probs=144.0
Q ss_pred cCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHH
Q 007426 17 DKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIM 86 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KIm 86 (604)
+.|...+..|+..|-.+++.- .++.||.++..+.+.. ...+|+.++..|..|+..... ...+. .+|
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I 236 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG--LLAIFKSGGI 236 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh--HHHHHHcCCH
Confidence 447888999999999988643 2356888888887432 345899999999988765321 11122 257
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426 87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN 165 (604)
Q Consensus 87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n 165 (604)
..+++-|.+.+. .+|..+..++..|+..- ++....+. ...+.+|++.|...+..++.-|+-||..+.-.
T Consensus 237 ~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~------~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~-- 306 (780)
T 2z6g_A 237 PALVNMLGSPVD--SVLFHAITTLHNLLLHQ------EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-- 306 (780)
T ss_dssp HHHHHHTTCSCH--HHHHHHHHHHHHHHHHS------TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHhCCC------hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--
Confidence 778888887753 47888888888888541 12222222 34678899999887766777777777755532
Q ss_pred CCCCCHHH----HH-HHHHHHHHhhcCCccchh--hHHHHHHHHHHhh---hhHHHHhHHHHHHHHHHHhcCCCCCCCHH
Q 007426 166 WRFASDEM----VN-KVCQNVAGALEEKSTQTN--SHMGLVMALAKHN---ALIVEAYARLLIQSGLRILNAGPGEANSQ 235 (604)
Q Consensus 166 wr~Ap~el----v~-rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n---~~iiea~g~~Ll~S~l~~L~~~~~ssDWq 235 (604)
.++. +. ...+.+..+|++...... +-..++..|+... ..++..+ .++..+++|. ..+..
T Consensus 307 ----~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g---~l~~Ll~lL~----~~~~~ 375 (780)
T 2z6g_A 307 ----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQR 375 (780)
T ss_dssp ----CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTT---HHHHHGGGTT----CSCHH
T ss_pred ----ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhc---hHHHHHHHHc----CCchH
Confidence 1111 11 244566777776532221 1123333333211 1122222 3566667776 56778
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 236 KRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 236 ~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
.+..|+.+|..|...... .. ....+|..|-..=.++-+.||..+..||.
T Consensus 376 ~~~~a~~~L~~L~~~~~~-~~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 376 LVQNCLWTLRNLSDAATK-QE--GMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp HHHHHHHHHHHHHTTCTT-CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchh-hh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888888888888754422 11 11234444333333455677877766663
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.14 E-value=0.0051 Score=66.30 Aligned_cols=230 Identities=17% Similarity=0.118 Sum_probs=148.3
Q ss_pred CCchhHHHHHHHHHHHHhhcC---CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426 18 KDADSRKSAMKALKSYVKDLD---SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLA 94 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~Ld---~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLs 94 (604)
.|+..|.+|+..|..+++.=. ..-++.|+.|+.|.+. .+|+.++.++..++.. .+ +..|+..++..|.
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~---~Ir~~alelL~~l~~~--~n----v~~iv~eL~~~l~ 395 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDV---SIKRRAMELSFALVNG--NN----IRGMMKELLYFLD 395 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCH---HHHHHHHHHHHHHCCS--SS----THHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCCh---hHHHHHHHHHHHHccc--cc----HHHHHHHHHHHHH
Confidence 589999999999999997411 1235788899986543 5899999999988762 23 4667777777776
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHH
Q 007426 95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMV 174 (604)
Q Consensus 95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv 174 (604)
+.+. .+|..++.+++.+|.... | .. ...+.-|.+.|....+.+..-+..++..+|... | ++-
T Consensus 396 ~~d~--e~r~~~v~~I~~la~k~~-~-----~~----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~-----p-~l~ 457 (618)
T 1w63_A 396 SCEP--EFKADCASGIFLAAEKYA-P-----SK----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS-----V-EMH 457 (618)
T ss_dssp HCCH--HHHHHHHHHHHHHHHSSC-C-----CH----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS-----C-STH
T ss_pred hCCH--HHHHHHHHHHHHHHHHhC-c-----cH----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC-----h-hHH
Confidence 6553 479999999999994321 1 12 233444445555555667777888999999852 2 233
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHH------------------HHHHHHHHhcCCCCCCCHHH
Q 007426 175 NKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARL------------------LIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 175 ~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~------------------Ll~S~l~~L~~~~~ssDWq~ 236 (604)
.....+++.+|.+...... ++ ++..-+++.||.. ++.-...+++.- ..+..+
T Consensus 458 ~~~v~~L~~~l~~~~~~~~----~~----~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~v 527 (618)
T 1w63_A 458 AYTVQRLYKAILGDYSQQP----LV----QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN--MSTSVT 527 (618)
T ss_dssp HHHHHHHHHHHHHCCSCSH----HH----HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST--TCCHHH
T ss_pred HHHHHHHHHHHhcccccHH----HH----HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc--CCCHHH
Confidence 3455566667765321111 11 1112234445532 233333444421 368899
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
|-++..++.++.... + +....+...|+.+..|.=..||+-+.+.+++.
T Consensus 528 r~~~lta~~Kl~~~~-~----~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 528 RGYALTAIMKLSTRF-T----CTVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHHTTC-S----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-c----chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999998887543 2 23677888899998888889999766654443
No 49
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.11 E-value=0.011 Score=67.32 Aligned_cols=255 Identities=14% Similarity=0.122 Sum_probs=160.9
Q ss_pred CchhHHHHHHHHHHHHhhc-------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC-Cccc--HHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKDL-------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN-IVPQ--IDSIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~L-------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~-iaPh--L~KImst 88 (604)
+.+.+.-|+..|-.++.+= +...+|+++..+.+... ..++++..-+.-|+..+-.. +.+. +..++..
T Consensus 508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~---~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIpp 584 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE---KGKRHATQALARIGITINPEVSFSGQRSLDVIRP 584 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH---HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHH
Confidence 7888899999998888641 47789999999975432 46999999999998764322 2221 2235666
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
++.-|. ++++...+- +++.||..-.. .+++-...|+. -.+.+|.+.|.+.+..+|.-|+-||..++-+..
T Consensus 585 Lv~LL~-~~~~~l~~~---eAl~AL~NLa~---~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-- 655 (810)
T 3now_A 585 LLNLLQ-QDCTALENF---ESLMALTNLAS---MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-- 655 (810)
T ss_dssp HHHTTS-TTSCHHHHH---HHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH--
T ss_pred HHHHhC-CCCcHHHHH---HHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH--
Confidence 666555 343322121 22334442221 12233344444 368899999999999999999999999986421
Q ss_pred CCCHHHH--HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH--HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007426 168 FASDEMV--NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA--RLLIQSGLRILNAGPGEANSQKRLLAIQ 242 (604)
Q Consensus 168 ~Ap~elv--~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g--~~Ll~S~l~~L~~~~~ssDWq~RKAAAe 242 (604)
.-..++ ....+-+.++|+......+ +=...+..|+..++..+..-. ...++-.+++|. ++|...|+.|+.
T Consensus 656 -~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~----s~d~~vq~~A~~ 730 (810)
T 3now_A 656 -VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA----NPSPAVQHRGIV 730 (810)
T ss_dssp -HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred -HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC----CCCHHHHHHHHH
Confidence 000111 1255667788887665554 223444444442222222211 134677778888 789999999999
Q ss_pred HHHHHHhhcCCCchhhhH--HHHHHHHHhcc-C--CCccchhHHHHHHHHHHHHh
Q 007426 243 MLNFLMKSLDPRSIFSEL--ELIIEGMENCQ-S--DQMAYVKGASLEALQTAKRI 292 (604)
Q Consensus 243 aL~~la~~~d~~~L~se~--~S~I~~LE~cR-f--DKVk~VR~am~eALq~wK~I 292 (604)
+|.-++.. + .....++ ..+|..|..+= . +|-..|++.+.+||+..-++
T Consensus 731 aL~NL~~~-s-~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 731 IILNMINA-G-EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHTT-C-HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-C-HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99998753 3 2344444 45888888883 2 26788999999999876554
No 50
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.99 E-value=0.0073 Score=67.11 Aligned_cols=256 Identities=9% Similarity=-0.012 Sum_probs=152.6
Q ss_pred CchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426 19 DADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS 96 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs 96 (604)
++--|..|+.-|-+|.+-|. ++-++.+|..|...=+ +.++.++...+..+++.-+..+.||++.||..+...|..+
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 55567889999999999886 4556665554443211 5689999999999999888889999999999999998764
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--cc-------hhhHHHHHHHHHHhccCCCC
Q 007426 97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--QE-------SLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--qe-------~vQsGAALCLAAlVEs~nwr 167 (604)
.-....+....++++.++..+ +.++....+..++.|+.+.|..- +. .-...+--||..++.+-+-.
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~-----~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLL-----RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTS-----CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 322346778888888888643 24566778889999999877631 10 11223333555555431111
Q ss_pred -----------CCCHHHHHHHHHHHHHhhcCCc--cch-hhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCC
Q 007426 168 -----------FASDEMVNKVCQNVAGALEEKS--TQT-NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEAN 233 (604)
Q Consensus 168 -----------~Ap~elv~rlc~Rv~kaL~~ks--~qt-kAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssD 233 (604)
.+-.+.++++.+-+..+|+... ... .+-+.+++.++..-+.-+.+|...+++-.+..+. +..
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~----~~~ 747 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQ----TRC 747 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC------C
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHh----cCC
Confidence 1123455566666666665321 111 2345566665554433445566666666665555 222
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-----chhhhH----HHHHHHHHhc---cCCCccchhHHHHHHHHH
Q 007426 234 SQKRLLAIQMLNFLMKSLDPR-----SIFSEL----ELIIEGMENC---QSDQMAYVKGASLEALQT 288 (604)
Q Consensus 234 Wq~RKAAAeaL~~la~~~d~~-----~L~se~----~S~I~~LE~c---RfDKVk~VR~am~eALq~ 288 (604)
- -.+...+..+....+.+ .|.... ..++..|.++ -++-.+.|+++.++.+..
T Consensus 748 ~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~ 811 (971)
T 2x1g_F 748 C---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQ 811 (971)
T ss_dssp C---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHH
Confidence 1 34666677766555432 122222 3344555555 444467777777766543
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.97 E-value=0.026 Score=60.18 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=141.2
Q ss_pred cCCchhHHHHHHHHHHHHhhcC--------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007426 17 DKDADSRKSAMKALKSYVKDLD--------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTT 88 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~Ld--------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImst 88 (604)
+.|...+..|+..|..+++.-+ .+.+|.++..+.+.. ...+++.++..|..|+........-.-..+|..
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~ 102 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNLSHHREGLLAIFKSGGIPA 102 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHH
Confidence 3588999999999999998543 145888888887532 245789999888888764321110011136777
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR 167 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr 167 (604)
+++-|.+++. .+|..+..++..|+..- ++....++ .-++.+|.+.|...+..++.-++-||..+.-.
T Consensus 103 Lv~lL~~~~~--~v~~~A~~aL~nL~~~~------~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---- 170 (644)
T 2z6h_A 103 LVKMLGSPVD--SVLFYAITTLHNLLLHQ------EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG---- 170 (644)
T ss_dssp HHHHTTCSSH--HHHHHHHHHHHHHHHHS------TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHhCCCH--HHHHHHHHHHHHHHhCc------chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc----
Confidence 8888887763 46888888888888542 11222232 34788899999887777788888888877643
Q ss_pred CCCHH----HHH-HHHHHHHHhhcCCccchhhHHHHHHHHHHhh------hhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426 168 FASDE----MVN-KVCQNVAGALEEKSTQTNSHMGLVMALAKHN------ALIVEAYARLLIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 168 ~Ap~e----lv~-rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n------~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~ 236 (604)
.++ ++. ...+.+..+|++... .+....++.+|..+. ..+++.+ .++..+++|. ..+-..
T Consensus 171 --~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~~~~~l~~~g---~l~~L~~ll~----~~~~~~ 240 (644)
T 2z6h_A 171 --NQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQRL 240 (644)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTTHHHHHHHTT---HHHHHHTTTT----CSCHHH
T ss_pred --CcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcccHHHHHHCC---CHHHHHHHHh----cCCHHH
Confidence 122 111 245667778876532 222223333322221 1122221 3455555555 567788
Q ss_pred HHHHHHHHHHHHhhcCCC-chhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426 237 RLLAIQMLNFLMKSLDPR-SIFSELELIIEGMENCQSDQMAYVKGASLEAL 286 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~-~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL 286 (604)
|..|+.+|..|....... .+...+...++.|. +.=..||..+..+|
T Consensus 241 ~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~----~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 287 (644)
T ss_dssp HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTT----CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 888888888876443211 11111233333332 33355666666555
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.95 E-value=0.024 Score=57.19 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=127.5
Q ss_pred CchhHHHHHHHHHHHHhh-------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD-------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTTI 89 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~-------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImstI 89 (604)
|.+.+..|+..|..+.+. .+.+.||.++..+.+.+ ..++.+++..+..|+..+.... ..+ ...+..+
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHH
Confidence 788999999999887643 14578999999987644 4589999999999998764421 111 2345667
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHhh--------------------cCCCCC----------------ccccchhhH-H
Q 007426 90 TKTLASSAGSFPLQQACSRVVPAIARY--------------------GIDPTT----------------PEDKKRHII-H 132 (604)
Q Consensus 90 VRRLsDsdSS~~vR~AC~kvv~ALAry--------------------~idp~~----------------~~~~~~~ii-~ 132 (604)
++-|.+++ ..++..+..+...|+.. +.++.. ..+....++ .
T Consensus 149 ~~ll~~~~--~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 226 (529)
T 1jdh_A 149 VALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226 (529)
T ss_dssp HHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT
T ss_pred HHHHhcCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHC
Confidence 77776654 34566555555555421 110000 000011111 1
Q ss_pred hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh---
Q 007426 133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL--- 208 (604)
Q Consensus 133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~--- 208 (604)
.++.+|.+.|...+..++..++-+|..+..... +.+.+..+.+.+.++|+.+....+ .-..+++.|+..+..
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 302 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh----hhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 245667777766666677777777777776532 112345677888888876544333 222333333333221
Q ss_pred -HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 209 -IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 209 -iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
+++.+ .++..++.|... +++|..|..|+.+|..|.
T Consensus 303 ~~~~~~---~v~~L~~ll~~~--~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 303 MVCQVG---GIEALVRTVLRA--GDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHHTT---HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHcC---ChHHHHHHHHcc--CCHHHHHHHHHHHHHHHH
Confidence 22222 466777777631 245999999999999985
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.88 E-value=0.025 Score=62.51 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccC-----CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET-----KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA 97 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt-----d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd 97 (604)
|+.+.+-|+.++.-+..+.++.++..|... +.+.-..++-++..++.++..=.....|++++||..+ -.|.++
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~- 501 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISIS- 501 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCC-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCC-
Confidence 344556677777666656677666555332 1111134666777777777544445678999998844 456653
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHH
Q 007426 98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKV 177 (604)
Q Consensus 98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rl 177 (604)
...||.++..+++.++.++.+. ...+..++.-|+..|.. ..|+.-||.+|..+++...-... +.+..+
T Consensus 502 -~~~vr~~~~~~l~~~~~~l~~~-------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~--p~~~~i 569 (963)
T 2x19_B 502 -NVQLADTVMFTIGALSEWLADH-------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP--PYAANI 569 (963)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHC-------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT--TTHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHhC-------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH--hhHHHH
Confidence 3458999999999999876421 12344455555555532 67899999999999986321111 345677
Q ss_pred HHHHHHhhcCCccc--hh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCC-CCCHHHHH---HHHHHHHHHHh
Q 007426 178 CQNVAGALEEKSTQ--TN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPG-EANSQKRL---LAIQMLNFLMK 249 (604)
Q Consensus 178 c~Rv~kaL~~ks~q--tk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~-ssDWq~RK---AAAeaL~~la~ 249 (604)
...+..+|.+.... .+ ..+..++.++..-+ .....|...+++-..+.+..... ..+-..|+ ...++|..+++
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777788753322 23 34556666665443 55567777777666655542111 12444444 56677777777
Q ss_pred hcC
Q 007426 250 SLD 252 (604)
Q Consensus 250 ~~d 252 (604)
.+.
T Consensus 650 ~~~ 652 (963)
T 2x19_B 650 TLD 652 (963)
T ss_dssp HCC
T ss_pred HcC
Confidence 775
No 54
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.84 E-value=0.057 Score=54.45 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=142.2
Q ss_pred cCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHH
Q 007426 17 DKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIM 86 (604)
Q Consensus 17 s~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KIm 86 (604)
+.|.+.+..|+..|..+++.- .++.+|.++..+.+.. ...+++.++..|..|+.... ....+. ..|
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ls~~~~--~~~~i~~~g~i 103 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNLSHHRE--GLLAIFKSGGI 103 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSHH--HHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCch--hHHHHHHcCCH
Confidence 348889999999999887632 2356899988887432 24578999999888875432 111111 256
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426 87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN 165 (604)
Q Consensus 87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n 165 (604)
..+++.|.+++. .+|..+..++..|+..-. +....++ ...+.+|.+.|...+..++.-++-||..+...
T Consensus 104 ~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~------~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-- 173 (529)
T 1jdh_A 104 PALVKMLGSPVD--SVLFYAITTLHNLLLHQE------GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-- 173 (529)
T ss_dssp HHHHHHTTCSCH--HHHHHHHHHHHHHHHHCT------THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHhcCCc------chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC--
Confidence 678888888763 467888888888885521 1122222 34778899999887777777777788766542
Q ss_pred CCCCCHHH----HH-HHHHHHHHhhcCCccchh--hHHHHHHHHHHhh---hhHHHHhHHHHHHHHHHHhcCCCCCCCHH
Q 007426 166 WRFASDEM----VN-KVCQNVAGALEEKSTQTN--SHMGLVMALAKHN---ALIVEAYARLLIQSGLRILNAGPGEANSQ 235 (604)
Q Consensus 166 wr~Ap~el----v~-rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n---~~iiea~g~~Ll~S~l~~L~~~~~ssDWq 235 (604)
.++. +. ...+.+..+|++...... +-..++..|+... ..+++.+ .++..+++|. ..+..
T Consensus 174 ----~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~~~~L~~ll~----~~~~~ 242 (529)
T 1jdh_A 174 ----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQR 242 (529)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT---HHHHHHTTTT----SSCHH
T ss_pred ----CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC---CHHHHHHHHh----CCChH
Confidence 1221 11 245567777775432221 1222222232211 1111111 3555556665 66888
Q ss_pred HHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 236 KRLLAIQMLNFLMKSLDPRS-IFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 236 ~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
.|..|+.+|..|........ +...+...++.| .+.=+.||..+..+|.
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----GSDDINVVTCAAGILS 291 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----TCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHH
Confidence 99999999999875432211 111223334444 3455667776665553
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.83 E-value=0.018 Score=61.45 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=146.9
Q ss_pred CchhHHHHHHHHHHHHhh-------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD-------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTIT 90 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~-------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIV 90 (604)
|.+.+..|+..|..+.+. .+...||.++..+.+.+ ..++++++..|..|+..+.......+ ..+|..++
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv 146 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH
Confidence 788889999999876653 24578999999987643 45899999999999987643221111 34567788
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhccc-chhhHHHHHHHHHHhccCCCCC
Q 007426 91 KTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQ-ESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 91 RRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qq-e~vQsGAALCLAAlVEs~nwr~ 168 (604)
+.|.+.+ ..++.++..++..|+.. ..+.+..++. ..+.+|.+.|.... +.++--++-+|..+-.+..
T Consensus 147 ~lL~~~~--~~~~~~a~~~L~~La~~------~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~--- 215 (644)
T 2z6h_A 147 ALLNKTN--VKFLAITTDCLQILAYG------NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--- 215 (644)
T ss_dssp HGGGCCC--HHHHHHHHHHHHHHHTT------CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT---
T ss_pred HHHCcCC--HHHHHHHHHHHHHHHhc------CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc---
Confidence 8887764 35677888888888731 1112222221 24667777776544 3444455555555544311
Q ss_pred CCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007426 169 ASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNF 246 (604)
Q Consensus 169 Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~ 246 (604)
.-..++. ...+.+..+|+..+.... .-+.++..|+...+.. .....+++..++.|. +.|+..|..|+.+|..
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~----~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG----SDDINVVTCAAGILSN 289 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT----CSCHHHHHHHHHHHHH
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence 1122333 266778888887643322 2223333333332111 112346777888888 7899999999999999
Q ss_pred HHhhcC--CCchhh--hHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 247 LMKSLD--PRSIFS--ELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 247 la~~~d--~~~L~s--e~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
|...-. +..+.. -+...++.|..... ...||..+..||..
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRH 333 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCC--cHHHHHHHHHHHHH
Confidence 864211 011111 13556666665421 24677776666643
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.70 E-value=0.023 Score=63.00 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=124.7
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT 88 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst 88 (604)
+.+.+..|+..|..++.. .+.+.++.++..+.+.+. ...++.++.++..|+.. . ...+.+ ..+|..
T Consensus 289 ~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~--~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~ 364 (780)
T 2z6g_A 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQA 364 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC--HHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHH
Confidence 344567777777766532 466788888887764321 23456778888888742 1 112222 123566
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426 89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
++.-|.+.+. .++..|..++..|++...+. + .+..++.+|...|...+..++.-|+.||..+...
T Consensus 365 Ll~lL~~~~~--~~~~~a~~~L~~L~~~~~~~----~----~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~----- 429 (780)
T 2z6g_A 365 LGLHLTDPSQ--RLVQNCLWTLRNLSDAATKQ----E----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----- 429 (780)
T ss_dssp HGGGTTCSCH--HHHHHHHHHHHHHHTTCTTC----S----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----
T ss_pred HHHHHcCCch--HHHHHHHHHHHHHhccchhh----h----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-----
Confidence 7777777653 35666677777777554321 1 1245778888888887788999999999999774
Q ss_pred CCHHHHH-----HHHHHHHHhhcCCccchhhHHHHHHHHHHhh---h-------hHHHHhHHHHHHHHHHHhcCCCCCCC
Q 007426 169 ASDEMVN-----KVCQNVAGALEEKSTQTNSHMGLVMALAKHN---A-------LIVEAYARLLIQSGLRILNAGPGEAN 233 (604)
Q Consensus 169 Ap~elv~-----rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n---~-------~iiea~g~~Ll~S~l~~L~~~~~ssD 233 (604)
+++... ..++++..+|...+.........+.+|..+. + .++..+ .++..+++|.. ..+
T Consensus 430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~---~l~~L~~lL~~---~~~ 502 (780)
T 2z6g_A 430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY---GLPVVVKLLHP---PSH 502 (780)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT---CHHHHHHTTST---TCC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC---CHHHHHHHhcC---CCh
Confidence 333222 3677888888763322122233333333322 1 122222 26677777874 456
Q ss_pred HHHHHHHHHHHHHHHh
Q 007426 234 SQKRLLAIQMLNFLMK 249 (604)
Q Consensus 234 Wq~RKAAAeaL~~la~ 249 (604)
|..|++|+.+|..|+.
T Consensus 503 ~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 503 WPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999874
No 57
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.02 Score=56.67 Aligned_cols=191 Identities=16% Similarity=0.261 Sum_probs=138.1
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP 137 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP 137 (604)
.|+|.+|+++.++++..+.++.|.+.|.+.-+-| +. ++|+-++-+++.|.+|+- . ..+++|
T Consensus 47 tV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k----sE-aIpltqeIa~a~G~la~i--~------------Pe~v~~ 107 (253)
T 2db0_A 47 TVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK----SE-AIPLTQEIAKAFGQMAKE--K------------PELVKS 107 (253)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----CC-SHHHHHHHHHHHHHHHHH--C------------HHHHHH
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----cc-cCchHHHHHHHHhHHHHh--C------------HHHHHh
Confidence 5899999999999999999999999999875433 33 478889999999999965 2 357788
Q ss_pred hHHhhhccc----chhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHH
Q 007426 138 LSDSLLGSQ----ESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEA 212 (604)
Q Consensus 138 L~EaL~~qq----e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea 212 (604)
+...|+..- ...-+|-+-.|-...-+ -+++...+..-+.-+|.+|...-| +-|+.++|+.....-.+.+
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIara------nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKA------NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHh------ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc
Confidence 888887765 34667777777766664 356777788888999999886667 7888888866555444444
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHH
Q 007426 213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASL 283 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~ 283 (604)
+ ++-....|. ..|=-.|-+|-|+|..||+ +.+. +-.-+-..++.|+..-.+=++.||++..
T Consensus 182 f----LprL~aLL~----D~deiVRaSaVEtL~~lA~-~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 182 F----LPRIINLLH----DGDEIVRASAVEALVHLAT-LNDK-LRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp G----HHHHHGGGG----CSSHHHHHHHHHHHHHHHT-SCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred c----hHHHHHHHc----CcchhhhHHHHHHHHHHHH-cCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4 666677888 5799999999999999984 4332 3323333344443333444555555443
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.56 E-value=0.043 Score=63.92 Aligned_cols=192 Identities=9% Similarity=0.142 Sum_probs=132.3
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 84 SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 84 KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+.+...++.|..++ .+.|.+++.+|+..+...... .. .. ..+...|..++..++.. -||.+-+.++.+.
T Consensus 14 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~ 82 (986)
T 2iw3_A 14 KVLEELFQKLSVAT-----ADNRHEIASEVASFLNGNIIE-HD--VP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQ 82 (986)
T ss_dssp HHHHHHHHHHTTCC-----TTTHHHHHHHHHHHHTSSCSS-SS--CC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCT
T ss_pred HHHHHHHhhccccc-----hhHHHHHHHHHHHHHhccccc-cc--cc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHh
Confidence 33444566665544 257777777777654421111 00 01 13555555666555555 8899999999877
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHH-hhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426 164 DNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAK-HNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAI 241 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~-~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAA 241 (604)
.+...+-++.+-.+++-+..++.+|...-+ |--..+-|+++ +|+.. ...+++..+..|+. +..||.+.+|.
T Consensus 83 ~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~---~~kw~~k~~~l 155 (986)
T 2iw3_A 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVE---TNKWQEKIAIL 155 (986)
T ss_dssp TTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHH---CCCHHHHHHHH
T ss_pred cCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhcc---ccchHHHHHHH
Confidence 665555566666789999999998765433 32223333333 33333 25678999999974 34799999999
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhh
Q 007426 242 QMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAA 294 (604)
Q Consensus 242 eaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~ 294 (604)
+.|..|+... +..++..+..+|-+++.|=+|-=|.|..++.+++...=.+-+
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 156 AAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999777 788888899999999999999999999999999887655433
No 59
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.52 E-value=0.81 Score=51.36 Aligned_cols=270 Identities=11% Similarity=0.080 Sum_probs=155.1
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC------CCcc-
Q 007426 8 ILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA------NIVP- 80 (604)
Q Consensus 8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~------~iaP- 80 (604)
-+.|.|...- ++|+.+.|-+.|+++-+ .|+ +...|..+.........+|-.|.-+|.-....|-. .|.|
T Consensus 6 ~l~~~L~~~~-spd~~~rAe~~L~~~~~--~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~ 81 (960)
T 1wa5_C 6 TVAKFLAESV-IASTAKTSERNLRQLET--QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPAN 81 (960)
T ss_dssp HHHHHHHHTT-SGGGHHHHHHHHHHHHT--STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHhhc--CCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHH
Confidence 3567777765 77764449999988843 343 44455555533333346799999999988888754 3333
Q ss_pred cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426 81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL 160 (604)
Q Consensus 81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl 160 (604)
.-..|=..|+..|.++.. .+|...+.+++.|+++-- |.. ...|+.=|+..+..++...+-|+=.||..+
T Consensus 82 ~k~~ik~~ll~~l~~~~~--~ir~~l~~~ia~ia~~d~-p~~--------Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i 150 (960)
T 1wa5_C 82 NVELIKKEIVPLMISLPN--NLQVQIGEAISSIADSDF-PDR--------WPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150 (960)
T ss_dssp HHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHS-TTT--------CTTHHHHHHTTCCSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhhC-ccc--------hhHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 233455666666655442 479999999999997732 211 134666677777666556788999999999
Q ss_pred hccCCCCCCCHHH-------HHHHHHHHHHh-------hcCCccc---hhhHHHHHHHHHHhh--------hhHHHHhHH
Q 007426 161 VDSDNWRFASDEM-------VNKVCQNVAGA-------LEEKSTQ---TNSHMGLVMALAKHN--------ALIVEAYAR 215 (604)
Q Consensus 161 VEs~nwr~Ap~el-------v~rlc~Rv~ka-------L~~ks~q---tkAhl~LV~ALs~~n--------~~iiea~g~ 215 (604)
++...|.+.++++ ++...+.+..+ |.+.... ....+....++.+.- +..++....
T Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~ 230 (960)
T 1wa5_C 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ 230 (960)
T ss_dssp HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 9864443455443 33334433332 4432111 010111111111111 222333334
Q ss_pred HHHHHHHHHhcCCC---C--------CCCHHHHHHHHHHHHHHHhhcCCCch----hhhHHHHHHHHHhccCCCccchhH
Q 007426 216 LLIQSGLRILNAGP---G--------EANSQKRLLAIQMLNFLMKSLDPRSI----FSELELIIEGMENCQSDQMAYVKG 280 (604)
Q Consensus 216 ~Ll~S~l~~L~~~~---~--------ssDWq~RKAAAeaL~~la~~~d~~~L----~se~~S~I~~LE~cRfDKVk~VR~ 280 (604)
..++..+.+|.... . +..|..||.+-+.|..++.... +.+ ...+..+++.|.+.. + ...-..
T Consensus 231 ~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~~f~~~~~~~~~~~~~~l~~~~-~-~~~~~~ 307 (960)
T 1wa5_C 231 VGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-DVFGPMINEFIQITWNLLTSIS-N-QPKYDI 307 (960)
T ss_dssp HHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHCC-S-CTTSHH
T ss_pred HHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC-C-CcCcHH
Confidence 44455566665321 1 1127889999999998874432 222 333455667776533 1 122346
Q ss_pred HHHHHHHHHHHhhhc
Q 007426 281 ASLEALQTAKRIAAE 295 (604)
Q Consensus 281 am~eALq~wK~Ia~~ 295 (604)
.+.+|++.|+.++..
T Consensus 308 ~~~~al~fl~~~~~~ 322 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRI 322 (960)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCc
Confidence 789999999998753
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.35 E-value=0.054 Score=61.78 Aligned_cols=258 Identities=19% Similarity=0.126 Sum_probs=156.0
Q ss_pred hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC---
Q 007426 7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG--- 75 (604)
Q Consensus 7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG--- 75 (604)
|.+++-|.+=..|.|.++.|+..|--+..+ .+...||.++..+... ++.+...++..|.-|+...-
T Consensus 380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHHHHHHHcCCchhhh
Confidence 334455554334889999999998655422 1567799999998753 34578889999999987321
Q ss_pred ------------CCCcc---------cHH---------HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccc
Q 007426 76 ------------ANIVP---------QID---------SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPED 125 (604)
Q Consensus 76 ------------~~iaP---------hL~---------KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~ 125 (604)
+.-+| |+. -.|..+|.-|++++ ..+|..++.+++.||.. .+
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s--~~vqe~Aa~aL~NLA~d-------~~ 527 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES--HNSQELIARVLNAVCGL-------KE 527 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC--HHHHHHHHHHHHHHHTS-------HH
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCC-------HH
Confidence 00011 222 24566777666654 34788888888888832 12
Q ss_pred cchhhHHh-hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC-CHHHHHHHHHHHHHhhcCCcc-c--hhhHHHHHH
Q 007426 126 KKRHIIHS-LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA-SDEMVNKVCQNVAGALEEKST-Q--TNSHMGLVM 200 (604)
Q Consensus 126 ~~~~ii~s-l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A-p~elv~rlc~Rv~kaL~~ks~-q--tkAhl~LV~ 200 (604)
-...++.. .++||...|......++-=||-+|+.+.-+.+...+ +...+....|.++.+|..... . ..|.+ .+.
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~-AL~ 606 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM-ALT 606 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH-HHH
T ss_pred HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH-HHH
Confidence 23334333 789999999877777888999999988765431100 011234578889999985422 1 11222 222
Q ss_pred HHHHhh----hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHh-ccCC
Q 007426 201 ALAKHN----ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMEN-CQSD 273 (604)
Q Consensus 201 ALs~~n----~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~-cRfD 273 (604)
-|+..+ ..+++++| ++..+++|. +.+-..|++|+++|..|+..- +.+..+. ..++..|=. .+.+
T Consensus 607 NLa~~~d~~~~~Ii~aG~---l~~Lv~LL~----s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 607 NLASMNESVRQRIIKEQG---VSKIEYYLM----EDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHTTSCHHHHHHHHHTTH---HHHHHHHHH----SCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHhcCCHHHHHHHHHcCC---HHHHHHHHc----CCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCC
Confidence 334332 23445444 678888888 577889999999999987532 2333222 124444322 2333
Q ss_pred CccchhHHHHHHHH
Q 007426 274 QMAYVKGASLEALQ 287 (604)
Q Consensus 274 KVk~VR~am~eALq 287 (604)
+ ..||.++.-||-
T Consensus 678 d-~~vq~~Aa~ALa 690 (810)
T 3now_A 678 D-EETATACAGALA 690 (810)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHH
Confidence 3 456666655553
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.33 E-value=0.076 Score=61.89 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhH
Q 007426 60 GEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLS 139 (604)
Q Consensus 60 Rke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~ 139 (604)
+..+-.|-+.+...-+...+| .+++..+.+-+.+-.+ . .+-..++.+|+.... ..+ .....+..++-.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~--~--~~a~~~~~~~~~~~~--~~~--~~e~~~~~~~~~~~ 101 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKT--A--ANAMQAVAHIANQSN--LSP--SVEPYIVQLVPAIC 101 (986)
T ss_dssp HHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHH--H--HHHHHHHHHHTCTTT--CCT--TTHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCC--H--HHHHHHHHHHHHhcC--CCC--CcccchHHHHHHHH
Confidence 333333333333333344666 3899999999877643 1 333345666663322 111 12355566888899
Q ss_pred HhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhhHHHHhHHHH
Q 007426 140 DSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEK-STQTN-SHMGLVMALAKHNALIVEAYARLL 217 (604)
Q Consensus 140 EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~iiea~g~~L 217 (604)
++++.+...|...|...+.|++.+- +++.+..++|.+...|+.. -.|+| +-|.++..|++..+..+......+
T Consensus 102 ~~~~dk~~~v~~aa~~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 102 TNAGNKDKEIQSVASETLISIVNAV-----NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence 9999999899999999999999983 4445688999999999865 37888 889999999988777777777777
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHH
Q 007426 218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGME 268 (604)
Q Consensus 218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE 268 (604)
++..-++.- ..--..-|||-+++..+-..++-++|..++..+|++|.
T Consensus 177 ~p~~~~~~~----d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 177 IPVLSETMW----DTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp HHHHHHHTT----CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred hcchHhhcc----cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 787777776 35668889999999999888888889988877776554
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.04 E-value=0.046 Score=59.47 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=141.4
Q ss_pred CCCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426 3 RCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIV 79 (604)
Q Consensus 3 r~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~ia 79 (604)
+++-|.+++.|..-+.++--|+-|+-.|-++.+ ++|+.+| .|+..|.+- .++++.|...++.++..++...+....
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 456777888885335578888999999999998 6777666 565555443 333456899999999999998887777
Q ss_pred ccHHHHHHHHHhhccCCCCC--------hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc-------
Q 007426 80 PQIDSIMTTITKTLASSAGS--------FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG------- 144 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS--------~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~------- 144 (604)
|++++++..+-+-|.+.+-+ ++--=+-.+.+..|+.|... .. .+...-+-.++..++..+.+
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~--~d-~~~~~~l~~~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP--ED-PAVRGRLTECLETILNKAQEPPKSKKV 300 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC--SS-HHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHHHHHhhccCcccccc
Confidence 88888777665554332110 00012556677777777531 10 11111122233333333221
Q ss_pred --ccc--hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccc--hhhHHHHHHHHHHhhh--hHHHHhHHH
Q 007426 145 --SQE--SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ--TNSHMGLVMALAKHNA--LIVEAYARL 216 (604)
Q Consensus 145 --qqe--~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q--tkAhl~LV~ALs~~n~--~iiea~g~~ 216 (604)
.|. .|-..++-|+-.+ + +..+++...+..+.++|.++... ..|+-.+ .-+++..+ ..+..
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l-~------~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l-~~l~~~~~~~~~~~~---- 368 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHH-D------SEPNLLVRACNQLGQFLQHRETNLRYLALESM-CTLASSEFSHEAVKT---- 368 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHH-HHHTTCTTTHHHHHT----
T ss_pred cccchHHHHHHHHHHHHHhc-C------CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHH-HHHHhccCcHHHHHH----
Confidence 222 3444444444443 2 35677888888899999754322 2232222 23333332 22222
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhc
Q 007426 217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENC 270 (604)
Q Consensus 217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~c 270 (604)
.....++||.. ..|-..|+-|.+.|..++.. +.+..-....++.|...
T Consensus 369 ~~~~i~~~L~~---d~d~~Ir~~aL~lL~~l~~~---~Nv~~Iv~eL~~yl~~~ 416 (621)
T 2vgl_A 369 HIETVINALKT---ERDVSVRQRAVDLLYAMCDR---SNAQQIVAEMLSYLETA 416 (621)
T ss_dssp THHHHHHHHTT---CCCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcc---CCCHhHHHHHHHHHHHHcCh---hhHHHHHHHHHHHHHhc
Confidence 24556677762 46888999999998886532 23443334455555543
No 63
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.52 E-value=0.34 Score=53.51 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=87.0
Q ss_pred HHhhhcC-CchhHHHHHHHHHHHHhhcC--CC----ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHH
Q 007426 12 ELANLDK-DADSRKSAMKALKSYVKDLD--SK----AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDS 84 (604)
Q Consensus 12 eL~KLs~-DRDT~~iA~~eLesiak~Ld--~d----tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~K 84 (604)
.|..|.. ++--+..|+.-|-+|.+-|. ++ -++.++..+.+ +.++.+|...|..+++.-+..++||++.
T Consensus 494 ~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-----~~V~~~A~~al~~l~~~~~~~l~p~~~~ 568 (963)
T 2x19_B 494 LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-----PELSVSSVSTLKKICRECKYDLPPYAAN 568 (963)
T ss_dssp HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-----GGGHHHHHHHHHHHHHHTGGGCTTTHHH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444441 23345667888888877653 22 34445555533 4689999999999999888889999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc
Q 007426 85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG 144 (604)
Q Consensus 85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~ 144 (604)
||..+...+...+-....+....++++.++... +.++....+..++.||.+.+..
T Consensus 569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~-----~~~~~~~~~~~l~~~l~~~l~~ 623 (963)
T 2x19_B 569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL-----QVEEILKNLHSLISPYIQQLEK 623 (963)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888654322346778888888888442 1355667788999999988753
No 64
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.46 E-value=0.17 Score=50.74 Aligned_cols=191 Identities=11% Similarity=0.064 Sum_probs=126.2
Q ss_pred cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426 37 LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY 116 (604)
Q Consensus 37 Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry 116 (604)
+.+..=+-|..++...+- -.+-.++-.+......-...+...++-++--++-|+.|+. +.|-..|-+++.++...
T Consensus 43 ~~~~~~~~~~~~lfs~d~---k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N--~~v~~~~L~~L~~l~~~ 117 (266)
T 2of3_A 43 LGNQAKVSLMSQLFHKDF---KQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETN--PAALIKVLELCKVIVEL 117 (266)
T ss_dssp HHTTBCHHHHHHHTCSCH---HHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHhcCCCH---HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHH
Confidence 333344667788886533 1233333333333333334455666666666676888775 44667888888887644
Q ss_pred cCC--CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-
Q 007426 117 GID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN- 193 (604)
Q Consensus 117 ~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk- 193 (604)
+.+ ....+.+ ...|+-.|.|=|+...+.+=-.+--+|..+.+- .| .+++-+++...|+.|+.+++
T Consensus 118 l~~~~y~~~~~e----a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-----~~---~~~v~~~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 118 IRDTETPMSQEE----VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-----VG---PLKMTPMLLDALKSKNARQRS 185 (266)
T ss_dssp HHHTTCCCCHHH----HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----HC---HHHHHHHHHHGGGCSCHHHHH
T ss_pred HHhccccchHHH----HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-----CC---HHHHHHHHHHHHccCCHHHHH
Confidence 443 2232222 245777789999999998866666667666553 12 45667778889999999998
Q ss_pred hHHHHHHHHHHhhhhHHHHhHHHHH---HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426 194 SHMGLVMALAKHNALIVEAYARLLI---QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD 252 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~iiea~g~~Ll---~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d 252 (604)
.=|..+.++....|.. . ...+ +.+...|. ..|-+.|.||..+|..+-.+++
T Consensus 186 e~l~~l~~li~~~G~~-~---~~~l~~~~~ia~ll~----D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 186 ECLLVIEYYITNAGIS-P---LKSLSVEKTVAPFVG----DKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHHCSG-G---GGGGCHHHHHGGGGG----CSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCC-c---cccccchHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhh
Confidence 5777887877776655 2 1235 77778888 6899999999999999887775
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.08 E-value=0.48 Score=47.27 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=113.6
Q ss_pred ccHHHHHHHHHhhccCCCCChh-------hHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHH-hhhcccchhh
Q 007426 80 PQIDSIMTTITKTLASSAGSFP-------LQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSD-SLLGSQESLT 150 (604)
Q Consensus 80 PhL~KImstIVRRLsDsdSS~~-------vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~E-aL~~qqe~vQ 150 (604)
|=-++.|-.++.-|.|+..+.. --+....+...|+.++-+.. -+..+. .-.+.||+. .|.+.+..++
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL~s~~~~vr 99 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD----NAADFCQLSGMHLLVGRYLEAGAAGLR 99 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTTTCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHHcCCCHHHH
Confidence 6668889999999988732110 01345566667776654221 122221 124578999 8888888899
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhh----HHHHhHHHHHHHHHH
Q 007426 151 AGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEK-STQTN-SHMGLVMALAKHNAL----IVEAYARLLIQSGLR 223 (604)
Q Consensus 151 sGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~----iiea~g~~Ll~S~l~ 223 (604)
.-||-||+.++..+. ..-.-++. ...+.+..+|+.. +...+ .-+..+..|+..++. ++.+ ..++..++
T Consensus 100 ~~Aa~~Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~---ggi~~L~~ 174 (296)
T 1xqr_A 100 WRAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL---DGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---THHHHHHH
T ss_pred HHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC---CCHHHHHH
Confidence 999999999997521 00011222 3778889999842 21111 123333344443332 2222 24777888
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 224 ILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 224 ~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
+|. +.|...++.|+-+|..|+.. +.+.+.... ..++..|=..=-.+=..||+.+..||.
T Consensus 175 lL~----~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~ 234 (296)
T 1xqr_A 175 AMQ----QQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234 (296)
T ss_dssp HHH----SSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHH
T ss_pred HHc----CCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHH
Confidence 888 68999999999999999865 333322221 123332222111234578888877774
No 66
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.68 E-value=0.17 Score=51.79 Aligned_cols=181 Identities=12% Similarity=0.103 Sum_probs=111.2
Q ss_pred CchhHHHHHHHHHHHHhh---------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH---HHHH
Q 007426 19 DADSRKSAMKALKSYVKD---------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI---DSIM 86 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~---------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL---~KIm 86 (604)
|.+.+..|+..|..++.. .+...||+++..|..+.+ ..+++.++..+..|+.. .+..-+.| ...|
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~--~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK--ESTLKSVLSALWNLSAH-CTENKADICAVDGAL 216 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcH
Confidence 677888888888777652 146779999988764322 34788888888888752 21112333 2466
Q ss_pred HHHHhhccCCCCC--hhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 87 TTITKTLASSAGS--FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 87 stIVRRLsDsdSS--~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
..+++-|.+.+.+ +.++..+.-++..|+.|+.. .++....++. -.+.||.+.|......++--|+-+|..+.-.
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence 7788888655432 12455555677777766431 1222222222 2678888888777667777777777777532
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426 164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM 243 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea 243 (604)
.++..+ .+++.++ ++..++.|. +.+-..|+.|+.+
T Consensus 294 ------~~~~~~--------------------------------~i~~~G~---i~~Lv~LL~----s~~~~i~~~A~~a 328 (354)
T 3nmw_A 294 ------NPKDQE--------------------------------ALWDMGA---VSMLKNLIH----SKHKMIAMGSAAA 328 (354)
T ss_dssp ------CHHHHH--------------------------------HHHHTTH---HHHHHTTTT----CSSHHHHHHHHHH
T ss_pred ------CHHHHH--------------------------------HHHHCCC---HHHHHHHHh----CCCHHHHHHHHHH
Confidence 111100 0112222 455666676 6788999999999
Q ss_pred HHHHHhh
Q 007426 244 LNFLMKS 250 (604)
Q Consensus 244 L~~la~~ 250 (604)
|..|+..
T Consensus 329 L~nL~~~ 335 (354)
T 3nmw_A 329 LRNLMAN 335 (354)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9998754
No 67
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.45 E-value=1.3 Score=50.94 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHHhhh-------cCCchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhC
Q 007426 8 ILRQELANL-------DKDADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSET---KENGSVSGEYTISLYEVLARVHG 75 (604)
Q Consensus 8 ~~rqeL~KL-------s~DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG 75 (604)
-+-+-|.+| ..-+--+..++.-|-+|.+-+. ++-||+-|.-+.+. ..+...++..|-.+|..+++...
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 344666666 3346678889999999999884 66788888887772 22334689999999999999999
Q ss_pred CCCcccHHHHHHHHHhhccC---C----C------------CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhc
Q 007426 76 ANIVPQIDSIMTTITKTLAS---S----A------------GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCK 136 (604)
Q Consensus 76 ~~iaPhL~KImstIVRRLsD---s----d------------SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~K 136 (604)
..+.||++.|+.++-.-|.- + + +.+--+--.-+++|.|...... +.+++...+..++.
T Consensus 570 ~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~---~~e~~~~~l~~ll~ 646 (980)
T 3ibv_A 570 KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL---TPEEQALYCDSLIN 646 (980)
T ss_dssp TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Confidence 99999999999998776641 1 1 0111123477788888866432 35677889999999
Q ss_pred hhHHhhhc
Q 007426 137 PLSDSLLG 144 (604)
Q Consensus 137 PL~EaL~~ 144 (604)
||+..|..
T Consensus 647 pl~~~l~~ 654 (980)
T 3ibv_A 647 ALIGKANA 654 (980)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.5 Score=45.28 Aligned_cols=155 Identities=9% Similarity=0.090 Sum_probs=93.5
Q ss_pred HHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH----HHHHHHHHHHH-HhhcCCccchh-hHHHHHHHHHH
Q 007426 131 IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD----EMVNKVCQNVA-GALEEKSTQTN-SHMGLVMALAK 204 (604)
Q Consensus 131 i~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~----elv~rlc~Rv~-kaL~~ks~qtk-Ahl~LV~ALs~ 204 (604)
+..++.-|--.|...|-.|+..|.-||.++++...-.+... ..+..+++.+. |.|.+...+++ +-+..+..++.
T Consensus 53 ~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 53 YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 34444445567778888899999999999998643222222 23445666554 45665443343 22333333333
Q ss_pred hhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch--hhhHHHHHHHHHhccCCCccchhHHH
Q 007426 205 HNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI--FSELELIIEGMENCQSDQMAYVKGAS 282 (604)
Q Consensus 205 ~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L--~se~~S~I~~LE~cRfDKVk~VR~am 282 (604)
... .+..++..++..|. +-+|+.|.++.+.|..++...+...+ ...+..++..+=.+=.|.-+.||+++
T Consensus 133 ~~~-----~~~~~~e~l~~~l~----~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 133 LDT-----SITQSVELVIPFFE----KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp TSS-----SSHHHHHHHGGGGG----CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred hcC-----cHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 211 12223444455555 88999999999999998876554433 22345566666556678999999999
Q ss_pred HHHHHHHHHhhh
Q 007426 283 LEALQTAKRIAA 294 (604)
Q Consensus 283 ~eALq~wK~Ia~ 294 (604)
.+.+-.--+..|
T Consensus 204 ~~l~~~ly~~~G 215 (278)
T 4ffb_C 204 MNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhC
Confidence 998865544433
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.33 E-value=0.42 Score=50.84 Aligned_cols=181 Identities=11% Similarity=0.088 Sum_probs=109.6
Q ss_pred CchhHHHHHHHHHHHHhh---------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH---HHH
Q 007426 19 DADSRKSAMKALKSYVKD---------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID---SIM 86 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~---------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~---KIm 86 (604)
|.+.+..|+..|..++.. .+...||+++..|..+.+ ..+++.++..+..|+.. .+..-+.|- -.|
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~--~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal 332 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK--ESTLKSVLSALWNLSAH-CTENKADICAVDGAL 332 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS--HHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC--HHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcH
Confidence 777888888877666542 146779999988764432 35788899999999863 222223332 366
Q ss_pred HHHHhhccCCCCC--hhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 87 TTITKTLASSAGS--FPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 87 stIVRRLsDsdSS--~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
..+++-|.+...+ +.++..+.-++..|+.|+.. ..+....++ .-.+.||.+.|......++--|+-+|..+.-.
T Consensus 333 ~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 7778877655432 12355555577777766431 112222222 12567788777766666777777777766532
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426 164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM 243 (604)
Q Consensus 164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea 243 (604)
.++.. ..+++.++ ++..++.|. +.+...|+.|+.+
T Consensus 410 ------~~~~~--------------------------------~~i~~~G~---I~~Lv~LL~----s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 410 ------NPKDQ--------------------------------EALWDMGA---VSMLKNLIH----SKHKMIAMGSAAA 444 (458)
T ss_dssp ------CHHHH--------------------------------HHHHHHTH---HHHHHTTTT----CSSHHHHHHHHHH
T ss_pred ------CHHHH--------------------------------HHHHHCCC---HHHHHHHHh----CCCHHHHHHHHHH
Confidence 11110 01122222 455666666 6788999999999
Q ss_pred HHHHHhh
Q 007426 244 LNFLMKS 250 (604)
Q Consensus 244 L~~la~~ 250 (604)
|..|+..
T Consensus 445 L~nL~~~ 451 (458)
T 3nmz_A 445 LRNLMAN 451 (458)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 9998754
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.55 E-value=1.9 Score=44.54 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHHHHHhh-------c-CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc-cHHHHHHHH
Q 007426 19 DADSRKSAMKALKSYVKD-------L-DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP-QIDSIMTTI 89 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~-------L-d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP-hL~KImstI 89 (604)
|.+.+..|+..|..++.. + +...||+|+..|..+. ...++++++..|..||.. . ..-. -+.-.+..+
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~L 132 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSST-D-ELKEELIADALPVL 132 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHH
Confidence 777888899888888764 2 5788999999997432 235899999999999964 2 2211 112455566
Q ss_pred Hhhc
Q 007426 90 TKTL 93 (604)
Q Consensus 90 VRRL 93 (604)
++-|
T Consensus 133 v~ll 136 (457)
T 1xm9_A 133 ADRV 136 (457)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6666
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.85 Score=52.16 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=91.7
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh-hhchhHHhhhcccch---hhHHHHHHHHHH
Q 007426 85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQES---LTAGAALCLKAL 160 (604)
Q Consensus 85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~---vQsGAALCLAAl 160 (604)
+|..++.-|++.+ ..+|...++++..|+.. .+..+.++.. .++||++.|....+. +..-||-.||.+
T Consensus 458 vIp~Lv~Ll~S~s--~~~re~A~~aL~nLS~d-------~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 458 LISFLKREMHNLS--PNCKQQVVRIIYNITRS-------KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHHHHHGGGSC--HHHHHHHHHHHHHHHTS-------GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCC--HHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 4455555554443 24688888999999833 2233444433 679999999887654 788899999999
Q ss_pred hccCCCCCCCHHHH-----HHHHHHHHHhhcC-Cccch-----------hhHHHHHHH---HHHhh--------hhHHHH
Q 007426 161 VDSDNWRFASDEMV-----NKVCQNVAGALEE-KSTQT-----------NSHMGLVMA---LAKHN--------ALIVEA 212 (604)
Q Consensus 161 VEs~nwr~Ap~elv-----~rlc~Rv~kaL~~-ks~qt-----------kAhl~LV~A---Ls~~n--------~~iiea 212 (604)
.-+.| |.-++ ....+.+..+|.. +...+ ..++..++| |+... ..++..
T Consensus 529 lis~n----p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 529 LIFTN----PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHTSC----HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HhcCC----HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 87765 12111 1577888899982 33321 113333334 44443 113332
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426 213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD 252 (604)
Q Consensus 213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d 252 (604)
.| .++...+.|. +++...|+||+|+|+-|+.+-+
T Consensus 605 ~g--a~~~L~~LL~----s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 605 KV--YWSTIENLML----DENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp HH--HHHHHHHGGG----CSSHHHHHHHHHHHHHHHTSGG
T ss_pred cC--HHHHHHHHHh----CCCHHHHHHHHHHHHHHhCCcH
Confidence 11 2455556666 6889999999999999986543
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.10 E-value=2.8 Score=47.97 Aligned_cols=239 Identities=10% Similarity=0.111 Sum_probs=136.8
Q ss_pred hhcCCchhHHHHHHHHHHHHhhcC-------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcc---cHH
Q 007426 15 NLDKDADSRKSAMKALKSYVKDLD-------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVP---QID 83 (604)
Q Consensus 15 KLs~DRDT~~iA~~eLesiak~Ld-------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaP---hL~ 83 (604)
+-. +..++..|++.|-.+..+-. ...+|+.|.-+.+........|+.+.+-|.-++... +..+.+ .+
T Consensus 467 ~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~- 544 (778)
T 3opb_A 467 HNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL- 544 (778)
T ss_dssp GGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST-
T ss_pred cCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc-
Confidence 334 78899999999998887542 566898888887654332236888988888887433 111111 12
Q ss_pred HHHHHHHhhcc-CCCCC---hhhHH-----HHHHHHHH---HHhhcCCCCCc-cccchhhHHh--hhchhHHhhhcccch
Q 007426 84 SIMTTITKTLA-SSAGS---FPLQQ-----ACSRVVPA---IARYGIDPTTP-EDKKRHIIHS--LCKPLSDSLLGSQES 148 (604)
Q Consensus 84 KImstIVRRLs-DsdSS---~~vR~-----AC~kvv~A---LAry~idp~~~-~~~~~~ii~s--l~KPL~EaL~~qqe~ 148 (604)
-.+.-++.-|. ++++. ..-++ ..-.+..| ||.+ |... ++-...|+.. ....|.+.|.++++.
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~---~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS---ETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC---CSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC---CcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 45566666666 33321 00011 12233344 4432 2111 2224557764 778888888888899
Q ss_pred hhHHHHHHHHHHhccCCC---CCCCHH--HHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH--HHHHH
Q 007426 149 LTAGAALCLKALVDSDNW---RFASDE--MVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR--LLIQS 220 (604)
Q Consensus 149 vQsGAALCLAAlVEs~nw---r~Ap~e--lv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~--~Ll~S 220 (604)
+|-.|+-||+.++.+..- .|.-.+ --.+=.+-+.++|......++ |-.+++.-|...++.+...-.. .++..
T Consensus 622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence 999999999999975321 121111 001113447788887776665 2222222222223333222222 35677
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHh----hcCCCchhhhH
Q 007426 221 GLRILNAGPGEANSQKRLLAIQMLNFLMK----SLDPRSIFSEL 260 (604)
Q Consensus 221 ~l~~L~~~~~ssDWq~RKAAAeaL~~la~----~~d~~~L~se~ 260 (604)
++++|.+. .+|-..|.-++-+|..|+. ..+.+.+..+.
T Consensus 702 Ll~lL~~~--~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~ 743 (778)
T 3opb_A 702 AIQVFADQ--IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743 (778)
T ss_dssp HHHHHHHT--TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHH
T ss_pred HHHHHhcc--CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHh
Confidence 78888842 2788899999999999884 23334555444
No 73
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.81 E-value=2 Score=43.83 Aligned_cols=231 Identities=16% Similarity=0.107 Sum_probs=126.0
Q ss_pred CCChhHHHhhhcc------CC--CCCCCchhhHHHHHHHHHHHhCCC--CcccHHHHHHHHHhhccCCCCChhhHHHHHH
Q 007426 39 SKAIPLFLAQVSE------TK--ENGSVSGEYTISLYEVLARVHGAN--IVPQIDSIMTTITKTLASSAGSFPLQQACSR 108 (604)
Q Consensus 39 ~dtlP~FLscV~d------td--~~~s~vRke~I~Lle~LArvHG~~--iaPhL~KImstIVRRLsDsdSS~~vR~AC~k 108 (604)
...+|+++.-|.. +. .....+++++...|.-||.-.... .+-...-+|..+|+-|++++. .++...+.
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~~ 149 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQVIAS 149 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--HHHHHHHH
Confidence 3556766666631 11 111246888888888888533211 111123457788888876552 35555555
Q ss_pred HHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc-cchhhHHHHHHHHHHhc-cCCCCCCCHHHH--HHHHHHHHH
Q 007426 109 VVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS-QESLTAGAALCLKALVD-SDNWRFASDEMV--NKVCQNVAG 183 (604)
Q Consensus 109 vv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q-qe~vQsGAALCLAAlVE-s~nwr~Ap~elv--~rlc~Rv~k 183 (604)
++..|+.. . ..+-+..|+. -.+.||.+.|... ...++--|+-+|..+.- ++. --..++ ....+-+.+
T Consensus 150 aL~nLs~~-~----~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~---nk~~i~~~~Gai~~Lv~ 221 (354)
T 3nmw_A 150 VLRNLSWR-A----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE---NKADICAVDGALAFLVG 221 (354)
T ss_dssp HHHHHHTT-C----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH---HHHHHHHSTTHHHHHHH
T ss_pred HHHHHhcc-C----CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh---hhHHHHHhcCcHHHHHH
Confidence 55555521 0 1122333332 3689999987654 45677777777777654 210 012333 236777888
Q ss_pred hhcCCccc----hh-hHHHHHHHHHHh---hh----hHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 184 ALEEKSTQ----TN-SHMGLVMALAKH---NA----LIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 184 aL~~ks~q----tk-Ahl~LV~ALs~~---n~----~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
+|..++.. .+ .=...+..|+.+ +. .+++++ .++..++.|. +.+...++.|+-+|..|+. -
T Consensus 222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g---~i~~Lv~lL~----~~~~~v~~~A~~aL~nLa~-~ 293 (354)
T 3nmw_A 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLK----SHSLTIVSNACGTLWNLSA-R 293 (354)
T ss_dssp HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT---HHHHHHHHTT----CSCHHHHHHHHHHHHHHTS-S
T ss_pred HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC---CHHHHHHHHc----CCChHHHHHHHHHHHHHhC-C
Confidence 99865432 11 112333333331 21 122222 3777888888 6888999999999999863 2
Q ss_pred CCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 252 DPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 252 d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
+.+....-. ..+|..|-..=..+-+.||+.+..||.
T Consensus 294 ~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 222222111 335566655544555667776666654
No 74
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.17 E-value=3.7 Score=43.61 Aligned_cols=229 Identities=16% Similarity=0.113 Sum_probs=126.3
Q ss_pred CCChhHHHhhhcc------C--CCCCCCchhhHHHHHHHHHHHhCCCCccc---HHHHHHHHHhhccCCCCChhhHHHHH
Q 007426 39 SKAIPLFLAQVSE------T--KENGSVSGEYTISLYEVLARVHGANIVPQ---IDSIMTTITKTLASSAGSFPLQQACS 107 (604)
Q Consensus 39 ~dtlP~FLscV~d------t--d~~~s~vRke~I~Lle~LArvHG~~iaPh---L~KImstIVRRLsDsdSS~~vR~AC~ 107 (604)
...+|+.+.-|.. + +.....+++++...|.-||.-... .-.. ..-+|..+|+-|++.+. .++..++
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~ 264 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESE--DLQQVIA 264 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCCcHHHHHHHHhCCCH--HHHHHHH
Confidence 4567777777631 1 111124688999999999853321 1112 24457888888886552 3454444
Q ss_pred HHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc-cchhhHHHHHHHHHHhc-c-CCCCCCCHHHH--HHHHHHH
Q 007426 108 RVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS-QESLTAGAALCLKALVD-S-DNWRFASDEMV--NKVCQNV 181 (604)
Q Consensus 108 kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q-qe~vQsGAALCLAAlVE-s-~nwr~Ap~elv--~rlc~Rv 181 (604)
.++..|+.. ...+-+..|+. -.+.||.+.|... ...++--|+-+|..+.- + +| -..++ ....+-+
T Consensus 265 ~aL~nLs~~-----~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n----k~~I~~~~Gal~~L 335 (458)
T 3nmz_A 265 SVLRNLSWR-----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN----KADICAVDGALAFL 335 (458)
T ss_dssp HHHHHHTSS-----CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHSTTHHHHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH----HHHHHHhcCcHHHH
Confidence 444444411 01122233332 3689999987664 45677777777777765 2 11 12232 2356778
Q ss_pred HHhhcCCccc----hh-hHHHHHHHHHH---hhh----hHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHh
Q 007426 182 AGALEEKSTQ----TN-SHMGLVMALAK---HNA----LIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMK 249 (604)
Q Consensus 182 ~kaL~~ks~q----tk-Ahl~LV~ALs~---~n~----~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~ 249 (604)
..+|..++.. .+ .=..++..|+. .+. .+++++ .++..++.|. +.+...++.|+-+|.-|+.
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---~i~~Lv~LL~----~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLK----SHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHHHHSS----CSCHHHHHHHHHHHHHHHS
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---cHHHHHHHHc----CCChHHHHHHHHHHHHHHc
Confidence 8888865432 11 11233333443 122 222332 3677788888 6788999999999999863
Q ss_pred hcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 250 SLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 250 ~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
-+.+....-. ..+|..|-..=-.+-+.||+.+..||.
T Consensus 409 -~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 409 -RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp -SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2222222111 335555555444555566766666654
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.60 E-value=0.87 Score=38.68 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=69.2
Q ss_pred hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHh
Q 007426 134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAY 213 (604)
Q Consensus 134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~ 213 (604)
....|.+.|..++..+...|+.+|...-+ .. + +.+.++|+++... ....++.+|.+.+.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~~----~-~~L~~~L~d~~~~--vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD--------EA----F-EPLLESLSNEDWR--IRGAAAWIIGNFQD------ 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS--------TT----H-HHHHHGGGCSCHH--HHHHHHHHHGGGCS------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc--------hH----H-HHHHHHHcCCCHH--HHHHHHHHHHhcCC------
Confidence 55667777777776777777666653321 11 2 5567888875422 34555666666642
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 214 ARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 214 g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
...++..++.|+ ..||..|.+|+++|..+- + ...+..|...=.|+-+.||.++.+||.
T Consensus 72 -~~a~~~L~~~L~----d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -ERAVEPLIKLLE----DDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -HHHHHHHHHHHH----HCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123566667777 589999999999999862 1 123333433334788899999998874
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.55 E-value=2.6 Score=49.28 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 219 QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 219 ~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
...++.|.. ..||..|.+|+.||..+- .+ .....+|..|+..-.|....||..+..||-.
T Consensus 614 ~rlv~~L~~---~~d~~VR~gAalALGli~--aG-----n~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 614 PRIVQLLSK---SHNAHVRCGTAFALGIAC--AG-----KGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHTTTGGG---CSCHHHHHHHHHHHHHHT--SS-----SCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHhc--cC-----CCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 444454543 789999999999998852 22 2336688888888999999999998877753
No 77
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.81 E-value=9.9 Score=43.89 Aligned_cols=220 Identities=11% Similarity=0.041 Sum_probs=122.4
Q ss_pred CchhhHHHHHHHHHHHhCC------CCcccHHHHHHHHHhhccCCC---CChhhHHHHHHHHHHHHhhcCCCCCccccch
Q 007426 58 VSGEYTISLYEVLARVHGA------NIVPQIDSIMTTITKTLASSA---GSFPLQQACSRVVPAIARYGIDPTTPEDKKR 128 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~------~iaPhL~KImstIVRRLsDsd---SS~~vR~AC~kvv~ALAry~idp~~~~~~~~ 128 (604)
..++=+|..|..+|..=.. -..+++|+++.-+++.|.+.- .-..||.+|-.+++..+.+...-+
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~------- 530 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES------- 530 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-------
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-------
Confidence 3467777777777663211 234788888877776654221 223489999999998888875311
Q ss_pred hhHHhhhchhHH--hhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCcc--c-------------
Q 007426 129 HIIHSLCKPLSD--SLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKST--Q------------- 191 (604)
Q Consensus 129 ~ii~sl~KPL~E--aL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~--q------------- 191 (604)
+.+..++.-|++ .|.+.++.|+.-||..++..++...-.-.| .+..+...+..+|.-+.. .
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~--~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN--YTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS--SHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 223334444444 444566789999999999999986533332 345566776666663211 1
Q ss_pred ----hh---hHHHHHHHHHHhhhh---HHHHhHHHH----HHHHHHHhcCCCCCCCHHHHH-HHHHHHHHHHhhcCCC--
Q 007426 192 ----TN---SHMGLVMALAKHNAL---IVEAYARLL----IQSGLRILNAGPGEANSQKRL-LAIQMLNFLMKSLDPR-- 254 (604)
Q Consensus 192 ----tk---Ahl~LV~ALs~~n~~---iiea~g~~L----l~S~l~~L~~~~~ssDWq~RK-AAAeaL~~la~~~d~~-- 254 (604)
.. -++-.+|.|+...+. -...|...| +.....++.......+=..+. -.+-+|..+++.....
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~ 688 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS 688 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC
Confidence 01 266667777766432 223444444 444556666433332222211 1233445556554211
Q ss_pred ---chhhhHH----HHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 255 ---SIFSELE----LIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 255 ---~L~se~~----S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
-+...+. -++.+|+.. -+-..||+++..+++-
T Consensus 689 ~~~p~~~~f~~~~~~il~~l~~~--~~~~~irea~~~~~~r 727 (980)
T 3ibv_A 689 EEVAWLASFNKASDEIFLILDRM--GFNEDIRGAVRFTSGR 727 (980)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHS--CCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 0222222 244566664 4668999998877653
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=87.80 E-value=13 Score=40.98 Aligned_cols=266 Identities=11% Similarity=0.123 Sum_probs=139.9
Q ss_pred CchhHHHHHHHHHHHHhh------cCCCChhHHHhhhccC---------------CCCCCCchhhHHHHHHHHHHHhC--
Q 007426 19 DADSRKSAMKALKSYVKD------LDSKAIPLFLAQVSET---------------KENGSVSGEYTISLYEVLARVHG-- 75 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~------Ld~dtlP~FLscV~dt---------------d~~~s~vRke~I~Lle~LArvHG-- 75 (604)
|.+.+..|+..|-.++.. +-...||+++.-|... +.....+++.+...|..||..+.
T Consensus 147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~ 226 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226 (584)
T ss_dssp SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence 555566666555433321 0013588887765211 11123578888888888875431
Q ss_pred CCCcccHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHHhhcCC--CCC----------------ccccchhh-H-
Q 007426 76 ANIVPQIDSIMTTITKTLAS----SAGSFPLQQACSRVVPAIARYGID--PTT----------------PEDKKRHI-I- 131 (604)
Q Consensus 76 ~~iaPhL~KImstIVRRLsD----sdSS~~vR~AC~kvv~ALAry~id--p~~----------------~~~~~~~i-i- 131 (604)
+..+=-.+-++..+|+-|++ .+.+..+..-|+-+..-|+..+.. |.. ...++-+. +
T Consensus 227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~ 306 (584)
T 3l6x_A 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306 (584)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence 11111112233445554432 222223567788888888744310 100 00111111 1
Q ss_pred HhhhchhHHhhhc-ccchhhHHHHHHHHHHhccCCCCCCCH--HHH--HHHHHHHHHhhcCCccchh-hHHHHHHHHHHh
Q 007426 132 HSLCKPLSDSLLG-SQESLTAGAALCLKALVDSDNWRFASD--EMV--NKVCQNVAGALEEKSTQTN-SHMGLVMALAKH 205 (604)
Q Consensus 132 ~sl~KPL~EaL~~-qqe~vQsGAALCLAAlVEs~nwr~Ap~--elv--~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~ 205 (604)
...++||..-|.. .++.++-.||-+|..+.-+ +|..+.. ..| ....+.+.++|..++...+ +-..+++-|+..
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag-~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAG-RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 1346778888864 4577899999999999875 4532211 133 2568889999998765544 445555555543
Q ss_pred --hhhHHHHhHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHHHHhhcC--CCchhh--hHHHHHHHHHhccCCCc
Q 007426 206 --NALIVEAYARLLIQSGLRILNAGPGE----ANSQKRLLAIQMLNFLMKSLD--PRSIFS--ELELIIEGMENCQSDQM 275 (604)
Q Consensus 206 --n~~iiea~g~~Ll~S~l~~L~~~~~s----sDWq~RKAAAeaL~~la~~~d--~~~L~s--e~~S~I~~LE~cRfDKV 275 (604)
|..+|. .-.|+-.++.|..+-.. .+-.+..+|.-+|+-|++.-. ...|.. -+..++..|++.. .+-
T Consensus 386 ~~~~~~I~---~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~ 461 (584)
T 3l6x_A 386 ARNKELIG---KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSE 461 (584)
T ss_dssp CSCHHHHH---HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCH
T ss_pred hhHHHHHH---hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CCh
Confidence 334443 34578888888843110 134678888899988763321 011111 1344455555432 244
Q ss_pred cchhHHHHHHHHHH
Q 007426 276 AYVKGASLEALQTA 289 (604)
Q Consensus 276 k~VR~am~eALq~w 289 (604)
+.++.|+.=--.+|
T Consensus 462 ~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 462 KEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444577
No 79
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.64 E-value=0.72 Score=52.42 Aligned_cols=185 Identities=8% Similarity=0.018 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhhccCC--
Q 007426 23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET---KENGSVSGEYTISLYEVLARVHGAN-IVPQIDSIMTTITKTLASS-- 96 (604)
Q Consensus 23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG~~-iaPhL~KImstIVRRLsDs-- 96 (604)
|+.+.+-|+.++.-...+.++.++..|... ....-..++-++..++.+|..-+.. -.++++.|+..++. |.+-
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~ 508 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhc
Confidence 445556677776433334455555444322 1111134666777777665322111 12468888888876 4321
Q ss_pred --CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH---
Q 007426 97 --AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD--- 171 (604)
Q Consensus 97 --dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~--- 171 (604)
+..+.+|..+..+++..+.+.... ...+..++.-|++.|.+.+..||.-||.++..+++.. +.
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~~-------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~-----~~~l~ 576 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKAH-------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC-----KYHFV 576 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-----THHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-----HHHhh
Confidence 222335555666777777665421 1345666677777887777899999999999999852 23
Q ss_pred --------HHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh--hHHHHhHHHHHHH
Q 007426 172 --------EMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA--LIVEAYARLLIQS 220 (604)
Q Consensus 172 --------elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~--~iiea~g~~Ll~S 220 (604)
+.+..+...+..++........ ..+-.++.++..-+ .....|...|++-
T Consensus 577 ~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 577 IQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp SCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3356777777777776433333 34556666655443 3345555554443
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=87.13 E-value=1.2 Score=37.88 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=68.5
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN 165 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n 165 (604)
+..+++.|.|++.. +|.++..+.+.+. ++ . +.+|.++|..++..|...|+-.|..+-+
T Consensus 14 ~~~l~~~L~~~~~~--vR~~A~~~L~~~~----~~------------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 14 LVPRGSHMADENKW--VRRDVSTALSRMG----DE------------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp -------CCSSCCC--SSSSCCSSTTSCS----ST------------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred HHHHHHHhcCCCHH--HHHHHHHHHHHhC----ch------------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 34456667777753 5766555443221 11 1 3778888887777888888887766432
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426 166 WRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLN 245 (604)
Q Consensus 166 wr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~ 245 (604)
. +..+.+.++|++++... -..++.+|.+.+. ...++..++.|+ ..|+..|.+|+++|.
T Consensus 72 -----~----~a~~~L~~~L~d~~~~V--R~~A~~aL~~~~~-------~~a~~~L~~~l~----d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -----E----RAVEPLIKLLEDDSGFV--RSGAARSLEQIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLE 129 (131)
T ss_dssp -----H----HHHHHHHHHHHHCCTHH--HHHHHHHHHHHCS-------HHHHHHHHHHTT----SCCTHHHHHHHHHGG
T ss_pred -----H----HHHHHHHHHHcCCCHHH--HHHHHHHHHHhCc-------HHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 2 23455667777664332 3444555555542 223566666776 689999999999986
Q ss_pred H
Q 007426 246 F 246 (604)
Q Consensus 246 ~ 246 (604)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=84.93 E-value=51 Score=36.33 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=135.4
Q ss_pred CchhHHHHHHHHHHHHhh--------cCCCC-hhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhC-------CCC-
Q 007426 19 DADSRKSAMKALKSYVKD--------LDSKA-IPLFLAQVSET---KENGSVSGEYTISLYEVLARVHG-------ANI- 78 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~--------Ld~dt-lP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG-------~~i- 78 (604)
|.+-+.-|+.-|..++.. .+.+. ++..+.-|.+. .++.....+.|++.|.-|+.-+- +.+
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 445555566555544321 02233 45665555432 22233467889999988874320 000
Q ss_pred ----------------ccc--HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--Hhhhchh
Q 007426 79 ----------------VPQ--IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPL 138 (604)
Q Consensus 79 ----------------aPh--L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL 138 (604)
+.. -+.+|..+++-|..+. ...++.+++.++.-|+.. ..+ .+ .....++ .-.+.+|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag-~~~-~~-~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAG-RWT-YG-RYIRSALRQEKALSAI 360 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSS-CSH-HH-HHHHHHHTSHHHHHHH
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcC-Ccc-cc-HHHHHHHHHcCcHHHH
Confidence 011 1455666777775554 345788877777777631 000 00 1111222 2347888
Q ss_pred HHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccch------hhHHHHHHHHH---Hhh---
Q 007426 139 SDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQT------NSHMGLVMALA---KHN--- 206 (604)
Q Consensus 139 ~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qt------kAhl~LV~ALs---~~n--- 206 (604)
.+-|....+.++--|+-+|..+....+= -..+-...+|+++.+|...+.+. .....+.++|. ..+
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~ 437 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence 9999888888998888889888875431 12344469999999998764221 11233333332 222
Q ss_pred -hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426 207 -ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK 279 (604)
Q Consensus 207 -~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR 279 (604)
..+++.+ .|+..+.+|... ...-...|+|+.+|..|+.+- ++ =..+++..|.|--++-
T Consensus 438 ~~~I~~~g---~I~~Lv~LL~s~--~~~~~v~k~Aa~vL~nl~~~~-------el---r~~~kk~G~~~~~f~~ 496 (584)
T 3l6x_A 438 AKKLRETQ---GIEKLVLINKSG--NRSEKEVRAAALVLQTIWGYK-------EL---RKPLEKEGWKKSDFQV 496 (584)
T ss_dssp HHHHHHTT---HHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHTSH-------HH---HHHHHTTTCCGGGGCC
T ss_pred HHHHHHCC---ChHHHHHHHhCC--CCChHHHHHHHHHHHHHHcCH-------HH---HHHHHHcCCCHHHhcc
Confidence 2233333 477788888831 136689999999999987422 22 2455667777777664
No 82
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=83.48 E-value=3.3 Score=48.50 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccC--C-CCC----------CCchhhHHHHHHHHHHHhCCCCcccH
Q 007426 18 KDADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSET--K-ENG----------SVSGEYTISLYEVLARVHGANIVPQI 82 (604)
Q Consensus 18 ~DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dt--d-~~~----------s~vRke~I~Lle~LArvHG~~iaPhL 82 (604)
.|+-.++.++.=|..|.+-+. ++-+|+.|.-|... + .++ ..+|+.|-..|..||+.++..++||+
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~ 623 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNF 623 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 388888888888877877764 55688887766644 1 110 14789999999999999999999999
Q ss_pred HHHHHHHHhhccCCC-CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc
Q 007426 83 DSIMTTITKTLASSA-GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG 144 (604)
Q Consensus 83 ~KImstIVRRLsDsd-SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~ 144 (604)
+.|..++...+.... =+-.-+-...++++.+|..+. +.+.....+..||.|++..+..
T Consensus 624 ~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~----~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 624 DMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK----NYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC----CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHcc
Confidence 999999998775332 111124566777777753321 2455566689999999999875
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=83.14 E-value=25 Score=36.47 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=103.6
Q ss_pred CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch
Q 007426 58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP 137 (604)
Q Consensus 58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP 137 (604)
..||=+-=.+..++...-. + | -.+.+|.|-|.+++ + --..-++.+|++. ++|. ++..+.+|
T Consensus 83 ~lKrLvYLyl~~~~~~~~e-~---i-Lv~Nsl~kDl~~~N---~--~iR~lALRtL~~I-~~~~--------m~~~l~~~ 143 (355)
T 3tjz_B 83 TLRRMCYLTIKEMSCIAED-V---I-IVTSSLTKDMTGKE---D--SYRGPAVRALCQI-TDST--------MLQAIERY 143 (355)
T ss_dssp HHHHHHHHHHHHHTTTSSC-G---G-GGHHHHHHHHHSSC---H--HHHHHHHHHHHHH-CCTT--------THHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHH-H---H-HHHHHHHhhcCCCc---H--hHHHHHHHHHhcC-CCHH--------HHHHHHHH
Confidence 3455544445555555222 1 2 45788999998887 2 2334466677644 3443 46789999
Q ss_pred hHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHH
Q 007426 138 LSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLL 217 (604)
Q Consensus 138 L~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~L 217 (604)
+-.+|.+.+-+|..-|++|.+.++.- .++++.+....+..+|.+++....+ +.+++|..... ..+..
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~------~pe~v~~~~~~l~~ll~d~n~~V~~--~Al~lL~ei~~-----~d~~a 210 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKC------SFDVVKRWVNEAQEAASSDNIMVQY--HALGLLYHVRK-----NDRLA 210 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTT------CHHHHHTTHHHHHHHTTCSSHHHHH--HHHHHHHHHHT-----TCHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhcc------CHHHHHHHHHHHHHHhcCCCccHHH--HHHHHHHHHHh-----hchHH
Confidence 99999999999999999999999985 4567888888999999887622221 22222222211 11222
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426 218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIA 293 (604)
Q Consensus 218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia 293 (604)
+...+.-|....-.+.|..- +.|..+++.. +..-..+...+++.++.+= +.+-.++ .+|+.|-|.
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~----~llr~l~~~~-~~d~~~~~~~~~~~l~~~L----~~~~~aV--vyEa~k~I~ 275 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYC----MMIRVASRQL-EDEDGSRDSPLFDFIESCL----RNKHEMV--VYEAASAIV 275 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHH----HHHHHHTCC------------------CCC----CCSSHHH--HHHHHHHHT
T ss_pred HHHHHHHHhcCCCcChHHHH----HHHHHHHHhc-cccchhhHHHHHHHHHHHH----cCCChHH--HHHHHHHHH
Confidence 33344455543223577553 3344433222 2221223466777777764 3444333 244555554
No 84
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=81.13 E-value=3.5 Score=39.94 Aligned_cols=89 Identities=7% Similarity=0.076 Sum_probs=69.3
Q ss_pred hhHHHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCC
Q 007426 42 IPLFLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120 (604)
Q Consensus 42 lP~FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp 120 (604)
+|+-|+|+-.. .-+. ..|+++-.|++.+++-||..---.-++|+.+..|.|-|+..++..+=+....+.+|...
T Consensus 89 ipsvLtCll~k-~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~---- 163 (196)
T 4atg_A 89 LPSLLTCVIGK-SIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN---- 163 (196)
T ss_dssp HHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH----
T ss_pred HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH----
Confidence 78889999843 2222 58999999999999999988777789999999999999999887777777776666643
Q ss_pred CCccccchhhHHhhhchhHHhhhc
Q 007426 121 TTPEDKKRHIIHSLCKPLSDSLLG 144 (604)
Q Consensus 121 ~~~~~~~~~ii~sl~KPL~EaL~~ 144 (604)
++..++=|-......
T Consensus 164 ---------~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 164 ---------VVNTVIREHAEEYKR 178 (196)
T ss_dssp ---------HHHTHHHHHHHHHHH
T ss_pred ---------HHHHhhhcCHHHHHH
Confidence 345666666665553
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=80.83 E-value=14 Score=38.03 Aligned_cols=150 Identities=10% Similarity=0.083 Sum_probs=83.9
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPLSDSLLGSQESLTAGAALCLKALVDS 163 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs 163 (604)
+..++.-|..+.. ..++.+++-++.-|++.- ......-...++ .-.+.||.+.|....+.++--|+-+|..+-..
T Consensus 285 l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~--~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 285 IRTYLNLMGKSKK-DATLEACAGALQNLTASK--GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCC-HHHHHHHHHHHHHhccCc--CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 4444444544432 235666666666665321 100000001222 13567899999888888988899888887553
Q ss_pred CCCCCCCHHH-HHHHHHHHHHhhcCCccch----hhHHHHHHHHH---Hhhhh----HHHHhHHHHHHHHHHHhcCCCCC
Q 007426 164 DNWRFASDEM-VNKVCQNVAGALEEKSTQT----NSHMGLVMALA---KHNAL----IVEAYARLLIQSGLRILNAGPGE 231 (604)
Q Consensus 164 ~nwr~Ap~el-v~rlc~Rv~kaL~~ks~qt----kAhl~LV~ALs---~~n~~----iiea~g~~Ll~S~l~~L~~~~~s 231 (604)
. .-..+ -....+.++.+|....... .....+..+|. ..++. +.+.+ .++...+++. +
T Consensus 362 ~----~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g---~l~~L~~L~~----~ 430 (457)
T 1xm9_A 362 P----LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS---MLNNIINLCR----S 430 (457)
T ss_dssp G----GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH---HHHHHHHHHH----C
T ss_pred H----HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC---CHHHHHHHHc----C
Confidence 2 11223 3457888999999865531 11223333332 22221 22222 3666777787 4
Q ss_pred C-CHHHHHHHHHHHHHHHh
Q 007426 232 A-NSQKRLLAIQMLNFLMK 249 (604)
Q Consensus 232 s-DWq~RKAAAeaL~~la~ 249 (604)
+ +-..+|.|+..|..+..
T Consensus 431 ~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 431 SASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp TTCHHHHHHHHHHHHTTSS
T ss_pred CCcHHHHHHHHHHHHHHHc
Confidence 5 77899999999987653
No 86
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.85 E-value=12 Score=43.75 Aligned_cols=267 Identities=9% Similarity=0.097 Sum_probs=144.4
Q ss_pred CCChHHHHHHh-hhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC------CCCCCCchhhHHHHHHHHHHHhCC
Q 007426 4 CLSPILRQELA-NLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET------KENGSVSGEYTISLYEVLARVHGA 76 (604)
Q Consensus 4 ~lsp~~rqeL~-KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt------d~~~s~vRke~I~Lle~LArvHG~ 76 (604)
.+.|+++..|+ .+. +||...=..-+.-+...-||.-+++|+.+|..- ....+....--|.||.-+-...|-
T Consensus 553 ~l~p~l~~~l~~~lt--~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~w 630 (997)
T 1vsy_5 553 FIENFLAKCLDYELN--HDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF 630 (997)
T ss_dssp HHHHHHHHHHSSCCC--TTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCC--chhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 46799999999 577 899998888888888889999999999988431 111233333446666665555554
Q ss_pred CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch-------------------
Q 007426 77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP------------------- 137 (604)
Q Consensus 77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP------------------- 137 (604)
- .|.+.+++.-.+ |.-+- -.||++=..+++.+..+..-|..+.- ...+ .-|++
T Consensus 631 r-~~~~~~~l~~~~--l~h~y--~~VRe~Ig~~L~~i~~~~~~~~~~~~--~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 702 (997)
T 1vsy_5 631 R-APDVGKLFDELV--FDHPY--DQVRQAVAKLLTTLVQNQSNPSISDP--TTLL-EAERNDPDGLGLPLKSVPEKVDAY 702 (997)
T ss_dssp S-SCCCHHHHHHCC--SCCSC--HHHHHHHHHHHHHHHHTSCCCCBSCH--HHHH-HHHHSCSSSSCCCSSCCCHHHHHH
T ss_pred c-cccHHHHHHHHH--hCCCh--HHHHHHHHHHHHHHHHhhcccCCCCH--HHHH-HhhccccccccCccccCcchHHHH
Confidence 3 556778877777 54432 34788888888888876554433211 1111 00111
Q ss_pred ---hHHhhhc---------ccchh----hHHHHHHHHHHhccCCCCCCCH----HHHHH-HHHHHHHhhcCCccchhhHH
Q 007426 138 ---LSDSLLG---------SQESL----TAGAALCLKALVDSDNWRFASD----EMVNK-VCQNVAGALEEKSTQTNSHM 196 (604)
Q Consensus 138 ---L~EaL~~---------qqe~v----QsGAALCLAAlVEs~nwr~Ap~----elv~r-lc~Rv~kaL~~ks~qtkAhl 196 (604)
+||-+.. .++.+ ..++-..+.=+..+-+ .... +.+.. ++|-+..+.+.+.-.--+.+
T Consensus 703 i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~--~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~ 780 (997)
T 1vsy_5 703 IKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMAR--GPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASL 780 (997)
T ss_dssp HHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSS--GGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTC
T ss_pred HHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhc--CCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhh
Confidence 1222220 00001 1112222222222211 0000 11122 33333333333211000111
Q ss_pred HHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHh-hcCCCchh-hhHHHHHHHHHhccCC
Q 007426 197 GLVMALAKHNALIVEAYARLLIQSGLRILNAGPG-EANSQKRLLAIQMLNFLMK-SLDPRSIF-SELELIIEGMENCQSD 273 (604)
Q Consensus 197 ~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~-ssDWq~RKAAAeaL~~la~-~~d~~~L~-se~~S~I~~LE~cRfD 273 (604)
.....+..+.... +....+..++..|....+ +.+| +|.++...|+.+.- ++ -.|. .+...+.+.+-++=.|
T Consensus 781 ~a~~~l~~ls~~~---~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~--f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 781 DPVRLYAGLGYMP---IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAEL--LQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp CSHHHHHHTSSSC---CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHT--TTSCTTHHHHTHHHHTTTTTC
T ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHhcC
Confidence 0001111221111 122334555555655444 6899 99999999887662 12 1222 3557888999999999
Q ss_pred Cc-cchhHHHHHHHHH
Q 007426 274 QM-AYVKGASLEALQT 288 (604)
Q Consensus 274 KV-k~VR~am~eALq~ 288 (604)
+- -.||+.|..+|-.
T Consensus 855 ~q~~EVRe~Aa~tLsg 870 (997)
T 1vsy_5 855 EQFVEVRVRAASILSD 870 (997)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 99 9999999999843
No 87
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.03 E-value=16 Score=36.33 Aligned_cols=94 Identities=11% Similarity=0.193 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhhcCCCChhHHHhhhccCC-CCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCC
Q 007426 21 DSRKSAMKALKSYVKDLDSKAIPLFLAQVSETK-ENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGS 99 (604)
Q Consensus 21 DT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd-~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS 99 (604)
|.+--.++..+.++-+-||.-+|-||..+.+-. ++...+||.++..++.++..|. =++++++.++..-|.|.+-+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHH
Confidence 444446777777666668889999999888742 2335789999999999998885 47888899888888887744
Q ss_pred hhhHH---HHHHHHHHHHhhcCC
Q 007426 100 FPLQQ---ACSRVVPAIARYGID 119 (604)
Q Consensus 100 ~~vR~---AC~kvv~ALAry~id 119 (604)
+ ++. +|.-..+..=+|+..
T Consensus 106 V-~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 106 V-IKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHHHHHHHhc
Confidence 3 443 344444444477775
No 88
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=72.98 E-value=28 Score=33.60 Aligned_cols=142 Identities=13% Similarity=0.221 Sum_probs=98.1
Q ss_pred chhhHHHHHHHHHHHhCCCCcccHHHHHHHHH-hhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch
Q 007426 59 SGEYTISLYEVLARVHGANIVPQIDSIMTTIT-KTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP 137 (604)
Q Consensus 59 vRke~I~Lle~LArvHG~~iaPhL~KImstIV-RRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP 137 (604)
.|+.++.=+++=...| -++||+-+-++.=| ..+.|. .+=...-+++.||... |.- .-+.-++.|+.|
T Consensus 24 ~r~~aL~sL~~D~gL~--~LlPyf~~fI~~~v~~nl~~l----~~L~~lm~~~~ALl~N---~~l---~lepYlH~Lips 91 (196)
T 4atg_A 24 MKDIAIECLEKESGLQ--QLVPYFIQHISELILKSFKEA----EVLKTCIALYFSLIKN---KHV---FIDPYLHQILPS 91 (196)
T ss_dssp THHHHHHHHHHCSSCT--TTHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHC---TTC---CCGGGHHHHHHH
T ss_pred HHHHHHHHHhcCCChh--hhHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHcC---CCC---ChHHHHHHHHHH
Confidence 5777777666655555 58999887777655 444422 2224567777777733 111 122347899999
Q ss_pred hHHhhhcccc---hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhH
Q 007426 138 LSDSLLGSQE---SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYA 214 (604)
Q Consensus 138 L~EaL~~qqe---~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g 214 (604)
+.-|+...+= .+---||-.|+..+.. +...-..+-.|+..-..++|-++.....+|.|++..|...++.++....
T Consensus 92 vLtCll~k~l~~~~LRd~AA~lL~~I~~~--~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~l 169 (196)
T 4atg_A 92 LLTCVIGKSIVDDDVRKMSADIVKYIYDT--YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVI 169 (196)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHHHHHHH--HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHH--hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhh
Confidence 9999988762 3667788899998885 2223356667888888888888775556899999999999988776554
No 89
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=71.81 E-value=14 Score=35.96 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=69.1
Q ss_pred hhhchhHHhhhcccc--hhhHHHHHHHHHHhccCCCCCCCHHHHHH--HHHHHHHhhcCCccchh-hHHHHHHHHHHh--
Q 007426 133 SLCKPLSDSLLGSQE--SLTAGAALCLKALVDSDNWRFASDEMVNK--VCQNVAGALEEKSTQTN-SHMGLVMALAKH-- 205 (604)
Q Consensus 133 sl~KPL~EaL~~qqe--~vQsGAALCLAAlVEs~nwr~Ap~elv~r--lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~-- 205 (604)
.-..||.+.|..... .+|.-||.+|..+...+. .....+-+ ..|.+..+|+.++...+ .=...+.-|+.-
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~---~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKS---EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 346788888888876 788889999988775421 12233333 56889999997653332 112222233332
Q ss_pred -h-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 206 -N-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 206 -n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
| ..|++++| |+..++.|.. +.++..++.|+-+|..|.
T Consensus 85 ~nk~~I~~~Ga---I~~Lv~lL~~---~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 85 DNKLEVAELNG---VPRLLQVLKQ---TRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHHTTH---HHHHHHHHHH---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---HHHHHHHHcc---CCCHHHHHHHHHHHHHHH
Confidence 2 23444444 7777888862 468999999999999986
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.24 E-value=93 Score=35.37 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcC--CCChhH----HHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc--------ccHHHHHHHHHh
Q 007426 26 AMKALKSYVKDLD--SKAIPL----FLAQVSETKENGSVSGEYTISLYEVLARVHGANIV--------PQIDSIMTTITK 91 (604)
Q Consensus 26 A~~eLesiak~Ld--~dtlP~----FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia--------PhL~KImstIVR 91 (604)
++.-|-+|.+-+. ++-++. ++.++.+ +...|+.+|-..|..++...+..++ ||++.||..+..
T Consensus 520 ~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~---~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~ 596 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE---THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQK 596 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 4455555555442 222333 3444443 2357899999999999987666554 999999999988
Q ss_pred hccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh
Q 007426 92 TLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL 143 (604)
Q Consensus 92 RLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~ 143 (604)
.+...+. .-...+-++++.++... | ..+.....+..++.|+.+.+.
T Consensus 597 ~~~~~~~--~~~~~~~eai~~ii~~~--~--~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 597 TTADLQP--QQVHTFYKACGIIISEE--R--SVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp HHTTSCH--HHHHHHHHHHHHHHHTC--C--SHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHHHHHHHHH
Confidence 8766442 12345667777776443 1 235566778889999876654
No 91
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=69.13 E-value=1.2e+02 Score=32.01 Aligned_cols=94 Identities=10% Similarity=0.210 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCC
Q 007426 21 DSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGS 99 (604)
Q Consensus 21 DT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS 99 (604)
|.+---++.++.++-+-||.-++-||-.|.+- .++...+||.++..++..+..+-. ++++++.++.--|.|.+-.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHH
Confidence 44444778888877777898999999999875 333457899999999999998744 4788888888888887754
Q ss_pred hhhHH---HHHHHHHHHHhhcCC
Q 007426 100 FPLQQ---ACSRVVPAIARYGID 119 (604)
Q Consensus 100 ~~vR~---AC~kvv~ALAry~id 119 (604)
+ ++. +|.-.....-+|+..
T Consensus 116 V-~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 116 V-VKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhc
Confidence 4 343 333333333377764
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=68.47 E-value=14 Score=42.89 Aligned_cols=162 Identities=6% Similarity=0.047 Sum_probs=89.3
Q ss_pred CCChhHHHhhhccC-C--CCCCCchhhHHHHHHHHHHHhC-CCCcccHHHHHHHHHhhccC---CCCChhhHHHHHHHHH
Q 007426 39 SKAIPLFLAQVSET-K--ENGSVSGEYTISLYEVLARVHG-ANIVPQIDSIMTTITKTLAS---SAGSFPLQQACSRVVP 111 (604)
Q Consensus 39 ~dtlP~FLscV~dt-d--~~~s~vRke~I~Lle~LArvHG-~~iaPhL~KImstIVRRLsD---sdSS~~vR~AC~kvv~ 111 (604)
.+.++.|+.-+... . .+.=..++-++--++.++..=. ....|+++++|..++.-+.. .|...+||+.+.-++|
T Consensus 446 ~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 34555555555332 1 1111335555555555542111 12568999999998876532 1233457788888888
Q ss_pred HHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC------CCCHHHHHHHHHHHHHhh
Q 007426 112 AIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR------FASDEMVNKVCQNVAGAL 185 (604)
Q Consensus 112 ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr------~Ap~elv~rlc~Rv~kaL 185 (604)
..++++.. .-..+..++.-|++.|.+.++.||.-|+-+++.+.+.-.-. ..+.+.++.+...+..++
T Consensus 526 ry~~wl~~-------~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~ 598 (1023)
T 4hat_C 526 QYPRFLKA-------HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT 598 (1023)
T ss_dssp TCHHHHHH-------CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH
T ss_pred HHHHHHhc-------cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH
Confidence 88888742 11224444555666665566789999999999988852100 011224566666666665
Q ss_pred cCCccchh-hHHHHHHHHHHhhh
Q 007426 186 EEKSTQTN-SHMGLVMALAKHNA 207 (604)
Q Consensus 186 ~~ks~qtk-Ahl~LV~ALs~~n~ 207 (604)
..-..... ..+-.++.+++.-+
T Consensus 599 ~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 599 ADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhCC
Confidence 53211121 34555555555443
No 93
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=66.81 E-value=63 Score=36.50 Aligned_cols=231 Identities=15% Similarity=0.104 Sum_probs=129.3
Q ss_pred CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC---cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH
Q 007426 38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI---VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIA 114 (604)
Q Consensus 38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i---aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALA 114 (604)
+++.|+.+|..|- ..+-.+|-++|.||+.|+...+..+ +--.|.=|+.+|--|.|+. -++|....-.+.+|+
T Consensus 120 ~~~~i~~Ll~lL~---~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt 194 (651)
T 3grl_A 120 QQENVTLLLSLLE---EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALT 194 (651)
T ss_dssp STHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhc---CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHh
Confidence 4666888888874 2335799999999999998886521 1112245677788888763 468998888888888
Q ss_pred hhcCCCCCccccchhhHHhhhchhHHhhhcccc----hhhHHHHHHHHHHhccCCCCCCCH-HHHHH--HHHHHHHhhcC
Q 007426 115 RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE----SLTAGAALCLKALVDSDNWRFASD-EMVNK--VCQNVAGALEE 187 (604)
Q Consensus 115 ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe----~vQsGAALCLAAlVEs~nwr~Ap~-elv~r--lc~Rv~kaL~~ 187 (604)
+. +.+=.|=-.|--...+||+-+-++.- -|..-...+|..+...+ ++. .++.+ ..+++.++|+.
T Consensus 195 ~~-----n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N----~sNQ~~FrEt~~i~~L~~LL~~ 265 (651)
T 3grl_A 195 RS-----NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN----NSNQNFFKEGSYIQRMKPWFEV 265 (651)
T ss_dssp TT-----CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTCGGGGGGGGCC
T ss_pred cC-----CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHhCC
Confidence 53 22222211221236789998888874 34556667788888763 122 34444 56677888874
Q ss_pred Cccc--------hh--hHHHHHHHHHHhhh---------hHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426 188 KSTQ--------TN--SHMGLVMALAKHNA---------LIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248 (604)
Q Consensus 188 ks~q--------tk--Ahl~LV~ALs~~n~---------~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la 248 (604)
+... ++ .-|.+|..|..-+. -.+-.. -++...+++|... .-.=..|..|+-++..+.
T Consensus 266 ~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~--g~l~~Ll~ll~~~--~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 266 GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC--GLLQQLCTILMAT--GVPADILTETINTVSEVI 341 (651)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT--THHHHHHHHHTCS--SCCHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHccC--CCCHHHHHHHHHHHHHHH
Confidence 3221 11 23444444432211 111111 1466677777731 123456666666666643
Q ss_pred hhcCCCchhhhH-----------HHHHHHHHhccCCC-ccchhHHHHHHHHH
Q 007426 249 KSLDPRSIFSEL-----------ELIIEGMENCQSDQ-MAYVKGASLEALQT 288 (604)
Q Consensus 249 ~~~d~~~L~se~-----------~S~I~~LE~cRfDK-Vk~VR~am~eALq~ 288 (604)
. .+ ..+..++ ..+|..|-+.-.+| .-.+|-|+...++.
T Consensus 342 r-gN-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 342 R-GC-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp T-TC-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred h-CC-HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 2 11 1222222 22444433332233 34567777666654
No 94
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.30 E-value=50 Score=38.84 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC---CC-
Q 007426 24 KSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA---GS- 99 (604)
Q Consensus 24 ~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd---SS- 99 (604)
-.|+..|=-|=..---+.+..+-.-++........++--++-=++.+..-|++ .++..+...|.+.+ +.
T Consensus 376 ~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~ 448 (963)
T 4ady_A 376 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDE 448 (963)
T ss_dssp HHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCH
T ss_pred HHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCcccccccc
Confidence 34555665543321112333333333321122235677777777777776764 24555555564443 11
Q ss_pred --hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHH
Q 007426 100 --FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKV 177 (604)
Q Consensus 100 --~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rl 177 (604)
-.+|.+++-.+|-+ |+ ++ +...+ ...|...|......+..+||+.|.-+-=.+ ...+.+..|
T Consensus 449 ~~~~ir~gAaLGLGla--~~----GS--~~eev----~e~L~~~L~dd~~~~~~~AalALGli~vGT----gn~~ai~~L 512 (963)
T 4ady_A 449 DVDVLLHGASLGIGLA--AM----GS--ANIEV----YEALKEVLYNDSATSGEAAALGMGLCMLGT----GKPEAIHDM 512 (963)
T ss_dssp HHHHHHHHHHHHHHHH--ST----TC--CCHHH----HHHHHHHHHTCCHHHHHHHHHHHHHHHTTC----CCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--hc----CC--CCHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhhccc----CCHHHHHHH
Confidence 12555533333332 11 11 11223 333444555454444558888888763332 366777777
Q ss_pred HHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch
Q 007426 178 CQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI 256 (604)
Q Consensus 178 c~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L 256 (604)
.+... +..+... --.++.+|+-+. +|+ ..+...++.|.. ..||-.|-+|+-+|.. + ..+
T Consensus 513 L~~~~---e~~~e~v--rR~aalgLGll~------~g~~e~~~~li~~L~~---~~dp~vRygaa~algl-A-yaG---- 572 (963)
T 4ady_A 513 FTYSQ---ETQHGNI--TRGLAVGLALIN------YGRQELADDLITKMLA---SDESLLRYGGAFTIAL-A-YAG---- 572 (963)
T ss_dssp HHHHH---HCSCHHH--HHHHHHHHHHHT------TTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHH-H-TTT----
T ss_pred HHHHh---ccCcHHH--HHHHHHHHHhhh------CCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-H-hcC----
Confidence 76543 3322111 112333443321 111 123455566653 5789999999888875 2 222
Q ss_pred hhhHHHHHH-HHHhccCCCccchhHHHHHHHH
Q 007426 257 FSELELIIE-GMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 257 ~se~~S~I~-~LE~cRfDKVk~VR~am~eALq 287 (604)
+.-...|+ .|+.|..|....||.++..||-
T Consensus 573 -TGn~~aIq~LL~~~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 573 -TGNNSAVKRLLHVAVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp -SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 12234454 6667777888889988766664
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=63.72 E-value=15 Score=41.88 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=81.1
Q ss_pred hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh---cCCccchhhHHHHHHHHHHhhhhH
Q 007426 133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGAL---EEKSTQTNSHMGLVMALAKHNALI 209 (604)
Q Consensus 133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL---~~ks~qtkAhl~LV~ALs~~n~~i 209 (604)
.++..+...|....+-|++-||.+|.-++. | +.++.+...+-..| .+=+.-+.+-|.|..+|-.+++..
T Consensus 299 ~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~-------p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a 370 (800)
T 3oc3_A 299 GLCRKLVSLLSSPDEDIKLLSAELLCHFPI-------T-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL 370 (800)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHTTSCC-------S-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCcccHHHHHHHHHhhhhcc-------h-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc
Confidence 344455566666777888888888876661 2 22444444444443 444555567899999988887532
Q ss_pred HHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426 210 VEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA 289 (604)
Q Consensus 210 iea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w 289 (604)
... ..|++-.-.+|. ..-...|+|+.++|..++ +.+.+- .++++.=+..-..||+. ++++|
T Consensus 371 ~~d--p~LVPRL~PFLR----HtITSVR~AVL~TL~tfL---~~~~LR-------LIFQNILLE~neeIl~l---S~~VW 431 (800)
T 3oc3_A 371 SIP--PERLKDIFPCFT----SPVPEVRTSILNMVKNLS---EESIDF-------LVAEVVLIEEKDEIREM---AIKLL 431 (800)
T ss_dssp CCC--SGGGGGTGGGGT----CSSHHHHHHHHHHTTTCC---CHHHHH-------HHHHHHHHCSCHHHHHH---HHHHH
T ss_pred ccC--hHHHHHHHhhhc----CCcHHHHHHHHHHHHHHH---hhhHHH-------HHHHHHHhCCcHHHHHH---HHHHH
Confidence 111 267888889999 678899999999987754 211111 33444444444555544 56778
Q ss_pred H
Q 007426 290 K 290 (604)
Q Consensus 290 K 290 (604)
|
T Consensus 432 k 432 (800)
T 3oc3_A 432 K 432 (800)
T ss_dssp H
T ss_pred H
Confidence 6
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.37 E-value=15 Score=36.89 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=69.1
Q ss_pred hHHHHHHhhhcCCc-hhHHHHHHHHHHHHhhc-CCCC-hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426 7 PILRQELANLDKDA-DSRKSAMKALKSYVKDL-DSKA-IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID 83 (604)
Q Consensus 7 p~~rqeL~KLs~DR-DT~~iA~~eLesiak~L-d~dt-lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~ 83 (604)
.++=..+.||+ |. |+-+-++.++-..+..+ .+.. ++..+..+- ... .-+|.+|+.+++.+=..||-. | .
T Consensus 132 ~~lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~k--sKN-~R~R~e~l~~l~~li~~~G~~--~--~ 203 (266)
T 2of3_A 132 AFVPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK--SKN-ARQRSECLLVIEYYITNAGIS--P--L 203 (266)
T ss_dssp HHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGG--CSC-HHHHHHHHHHHHHHHHHHCSG--G--G
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHc--cCC-HHHHHHHHHHHHHHHHhcCCC--c--c
Confidence 34455689999 54 55555555444444433 4432 344444442 121 457999999999999999986 4 5
Q ss_pred HHH---HHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426 84 SIM---TTITKTLASSAGSFPLQQACSRVVPAIARYG 117 (604)
Q Consensus 84 KIm---stIVRRLsDsdSS~~vR~AC~kvv~ALAry~ 117 (604)
+.+ -.|.+-|.|+|++ ||+|+..++..+=+.+
T Consensus 204 ~~l~~~~~ia~ll~D~d~~--VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVN--VRNAAINVLVACFKFE 238 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHH--HHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHH--HHHHHHHHHHHHHHHh
Confidence 678 8899999999986 5999999998877654
No 97
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=56.17 E-value=41 Score=36.86 Aligned_cols=147 Identities=20% Similarity=0.330 Sum_probs=87.0
Q ss_pred CChHHHHHHhhhcCCchhHHHHHHHHHHHHhh-------cCCCChhHHHhh-hccCCCCCCCchhhHHHHHHHHHHHhC-
Q 007426 5 LSPILRQELANLDKDADSRKSAMKALKSYVKD-------LDSKAIPLFLAQ-VSETKENGSVSGEYTISLYEVLARVHG- 75 (604)
Q Consensus 5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~-------Ld~dtlP~FLsc-V~dtd~~~s~vRke~I~Lle~LArvHG- 75 (604)
+-|++.+ |. +.|++.|..|...|-.++++ +..+.|++.|.. +.|++ ..||.++.-.|..||..=|
T Consensus 36 i~Pll~~-L~--S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~---~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 36 ILPVLKD-LK--SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNN---IDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp THHHHHH-HS--SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSC---HHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHH-cC--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhcCc
Confidence 3477654 53 34999999999999999874 124557766654 55443 3599999999999886533
Q ss_pred --------CCCcccHHHHHHHHHhhccCCCCChh------------hHHHHHHHHHHHHhhcCCCCCccccchhhH-Hhh
Q 007426 76 --------ANIVPQIDSIMTTITKTLASSAGSFP------------LQQACSRVVPAIARYGIDPTTPEDKKRHII-HSL 134 (604)
Q Consensus 76 --------~~iaPhL~KImstIVRRLsDsdSS~~------------vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl 134 (604)
..|.|+|-..+..+.-.+........ +-......+.+|+.. +.+--..++ ...
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~------s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA------RDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHTCHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHhccc
Confidence 33677777777666665533221110 001111223333321 111111111 124
Q ss_pred hchhHHhhhccc---chhhHHHHHHHHHHhcc
Q 007426 135 CKPLSDSLLGSQ---ESLTAGAALCLKALVDS 163 (604)
Q Consensus 135 ~KPL~EaL~~qq---e~vQsGAALCLAAlVEs 163 (604)
+-+|+..|.... ..++..|+-||..+.|.
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 567777776655 34789999999999886
No 98
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.67 E-value=10 Score=39.17 Aligned_cols=145 Identities=11% Similarity=0.095 Sum_probs=86.2
Q ss_pred hhHHHhhhccC-CCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHH-hhc----cCCCCChhhHHHHHHHHHHHH
Q 007426 42 IPLFLAQVSET-KENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTIT-KTL----ASSAGSFPLQQACSRVVPAIA 114 (604)
Q Consensus 42 lP~FLscV~dt-d~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIV-RRL----sDsdSS~~vR~AC~kvv~ALA 114 (604)
+|++|..|... ...-+ .-..|.|+|+.++..-.|..+.|.+|+|+.++- .+| .|=..-+-.|.+=-+-..++-
T Consensus 71 ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~ 150 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVN 150 (321)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 89999877654 21112 224689999999999999999999999999865 222 454443338999999999999
Q ss_pred hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHH--------HHHHHHHhhc
Q 007426 115 RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNK--------VCQNVAGALE 186 (604)
Q Consensus 115 ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~r--------lc~Rv~kaL~ 186 (604)
.++-+.... =..+.+..++.-+.=|.-+.+..++--+=-+|.-+++.-. . .++..+. ++.-|...|-
T Consensus 151 ~~cF~al~~--lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~--~-~~~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 151 SHCFPAFLA--IPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA--Q-EEAAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHCTTHHHH--SCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--H-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHc--CCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh--c-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877631110 0112233344444444556676664333334444444211 0 2244443 5555666666
Q ss_pred CCccc
Q 007426 187 EKSTQ 191 (604)
Q Consensus 187 ~ks~q 191 (604)
+..-.
T Consensus 226 Ds~Hk 230 (321)
T 1w9c_A 226 DTSHT 230 (321)
T ss_dssp SSSCC
T ss_pred Cchhh
Confidence 64433
No 99
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=48.64 E-value=1.6e+02 Score=34.37 Aligned_cols=215 Identities=13% Similarity=0.168 Sum_probs=123.3
Q ss_pred CchhHHHHHHHHHHHHhhcCCC-----ChhHHHhhhccC---------------CCCCCCch-----hhHHHHH------
Q 007426 19 DADSRKSAMKALKSYVKDLDSK-----AIPLFLAQVSET---------------KENGSVSG-----EYTISLY------ 67 (604)
Q Consensus 19 DRDT~~iA~~eLesiak~Ld~d-----tlP~FLscV~dt---------------d~~~s~vR-----ke~I~Ll------ 67 (604)
|.+.-.++++=+-.++++|-.+ .+.+++.+|... ++.+..+| ++.+..|
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 6777788888877788776432 233444444321 11122212 1223333
Q ss_pred -HHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc--
Q 007426 68 -EVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG-- 144 (604)
Q Consensus 68 -e~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~-- 144 (604)
-.++.+=|.. -+..|+..+-+.+..+..+-..+.|+.=++|+++..+. ++.-...+..+.++|+..+-.
T Consensus 437 L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~-----~~~e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 437 LVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS-----EDTEKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC-----HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC-----chhHHHHHHHHHHHHHHhhhccc
Confidence 2333333322 23334444444555544457788999999999995432 222346677888899985543
Q ss_pred --ccch-hhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCC--ccchh---hHHHHHHHHHHhhhhHH------
Q 007426 145 --SQES-LTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEK--STQTN---SHMGLVMALAKHNALIV------ 210 (604)
Q Consensus 145 --qqe~-vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~k--s~qtk---Ahl~LV~ALs~~n~~ii------ 210 (604)
..+. +...++.+|.+.-+ |-....+.+..+...+...|.++ ..+.. |.+.+. +-.+...
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~---wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~----~~c~~~l~~~~~~ 581 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPR---FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV----QKCKYHFVIQQPR 581 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHH---HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH----HHHTHHHHSCCTT
T ss_pred cCcchHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH----HHHHHHhhccCCC
Confidence 2333 45567777765444 22224567788888888888654 23333 222222 2222222
Q ss_pred --HHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426 211 --EAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD 252 (604)
Q Consensus 211 --ea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d 252 (604)
++|...+++....+++ .-+...+..+.|+|+.++..+.
T Consensus 582 e~~p~~~~il~~l~~~~~----~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 582 ESEPFIQTIIRDIQKTTA----DLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp CSSCHHHHHHHTHHHHHT----TSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCC
Confidence 3466777787778877 4678888899999999987764
No 100
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=44.93 E-value=6.9 Score=38.35 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 231 EANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 231 ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
..+|+.|++||+.|. +..|+.. -|....||.++.++|.+
T Consensus 205 D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp CSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred CCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 689999999998853 2455667 79999999999887643
No 101
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=42.40 E-value=1.7e+02 Score=33.47 Aligned_cols=113 Identities=9% Similarity=0.076 Sum_probs=76.5
Q ss_pred cchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCC---HHHHHHHHHHHHHhhcC-----CccchhhHHH
Q 007426 126 KKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFAS---DEMVNKVCQNVAGALEE-----KSTQTNSHMG 197 (604)
Q Consensus 126 ~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap---~elv~rlc~Rv~kaL~~-----ks~qtkAhl~ 197 (604)
.+...+..|..++.-+|..++..+..-+.-||+.+-.= .| +-++..++.|+..+|+. +| |+. +
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l-----~P~~~~lVlP~vL~r~y~sLe~~~l~e~H-rl~---~ 402 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLEL-----DPSNAYLIYDKILIDLYDTLADQFINSRH-RII---S 402 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT-----CCTTHHHHHHHHHHHHHHHHTTTTTTCHH-HHH---H
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhc-----CCCccceehHHHHHHHHHHhccccccchh-HHH---H
Confidence 33444554555555677777778777778888877664 37 88899999999999875 33 222 2
Q ss_pred HHHHHHHhhhhHH-----HHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426 198 LVMALAKHNALIV-----EAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL 251 (604)
Q Consensus 198 LV~ALs~~n~~ii-----ea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~ 251 (604)
.+.+|+.+.+.++ .++...||..++.-+| .+|..+=..+.+.+..++..+
T Consensus 403 aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID----~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 403 SLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLD----MNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp HHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCC----cccHHHHHHHHHHHHHHHHhc
Confidence 2223333332222 3556667777777777 899999999999999998765
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=42.26 E-value=2.7e+02 Score=27.76 Aligned_cols=167 Identities=15% Similarity=0.086 Sum_probs=90.9
Q ss_pred cHHHHHHHHHhhccCCCCChh-hHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhHHHHHHHH
Q 007426 81 QIDSIMTTITKTLASSAGSFP-LQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTAGAALCLK 158 (604)
Q Consensus 81 hL~KImstIVRRLsDsdSS~~-vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQsGAALCLA 158 (604)
++-+.|..+.+.+..-.--|. +-+++-....++. ..-+.+|+..|.... +.|..=|+--|.
T Consensus 34 ~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~-----------------~~~~~~la~~L~~~~~deVR~~Av~lLg 96 (240)
T 3l9t_A 34 SMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND-----------------GEYIKKLAFLAYQSDVYQVRMYAVFLFG 96 (240)
T ss_dssp CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC-----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 455566666666655322232 3344444433332 124557777777665 456655555444
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHHH-hhcCCccchhhHHHHHHHHHHhhhhHHH-HhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426 159 ALVDSDNWRFASDEMVNKVCQNVAG-ALEEKSTQTNSHMGLVMALAKHNALIVE-AYARLLIQSGLRILNAGPGEANSQK 236 (604)
Q Consensus 159 AlVEs~nwr~Ap~elv~rlc~Rv~k-aL~~ks~qtkAhl~LV~ALs~~n~~iie-a~g~~Ll~S~l~~L~~~~~ssDWq~ 236 (604)
.+ . +. .++++-+-. +-.+++++. .--++...+..+. .+-..+++...+-+. .+|--.
T Consensus 97 ~~--~------~~---~~~L~~ir~~va~D~~WrV------re~lA~a~~~~~~~~~pe~~l~~~~~W~~----d~n~~V 155 (240)
T 3l9t_A 97 YL--S------KD---KEILIFMRDEVSKDNNWRV------QEVLAKAFDEFCKKIEYKKALPIIDEWLK----SSNLHT 155 (240)
T ss_dssp HT--T------TS---HHHHHHHHHTGGGCSCHHH------HHHHHHHHHHHHHHHCTTTTHHHHHHHHH----CSSHHH
T ss_pred hc--c------Cc---HHHHHHHHHHhCCCCCccH------HHHHHHHHHHHHHhcCHHHHHHHHHHHhc----CCCHHH
Confidence 44 1 11 234444444 333555422 2222222222222 222234555666666 577778
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426 237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT 288 (604)
Q Consensus 237 RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~ 288 (604)
|.+|++.+.-..+ . + .+......++..+|..+-|+=.+||.|+--+|.=
T Consensus 156 RR~Ase~~rpW~~-~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 156 RRAATEGLRIWTN-R-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp HHHHHHHTCSGGG-S-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhc-c-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 8888888754332 1 1 2334557799999999999999999999888753
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=42.23 E-value=2.2e+02 Score=33.48 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc------------ccchhhHHHHHHHHHHhccCCCCC
Q 007426 101 PLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG------------SQESLTAGAALCLKALVDSDNWRF 168 (604)
Q Consensus 101 ~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~------------qqe~vQsGAALCLAAlVEs~nwr~ 168 (604)
.+|......++++.+|...- + +.+..++.=|+.+|.. ..+.++.-|+.||+.+.+.
T Consensus 547 ~l~~~~i~~l~~l~~~~~~~--p-----~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~----- 614 (1204)
T 3a6p_A 547 LILSCVLTNVSALFPFVTYR--P-----EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRD----- 614 (1204)
T ss_dssp HHHHHHHHHHHHHGGGGGTC--G-----GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhcC--c-----hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHH-----
Confidence 48999999999999997631 1 1122222223333332 3457899999999999986
Q ss_pred CCHHH---HHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHhh-----hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007426 169 ASDEM---VNKVCQNVAGALEEKS-TQTNSHMGLVMALAKHN-----ALIVEAYARLLIQSGLRILNAGPGEANSQKRLL 239 (604)
Q Consensus 169 Ap~el---v~rlc~Rv~kaL~~ks-~qtkAhl~LV~ALs~~n-----~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKA 239 (604)
.++.+ +..+...+..+|.... ...+.++.|.-||+.+. ......|...++.-.++-+. +.+|+.=.+
T Consensus 615 ~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~----~~~~~~~~s 690 (1204)
T 3a6p_A 615 YPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL----SQDMHRVLS 690 (1204)
T ss_dssp CHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS----CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc----cHHHHHhhc
Confidence 45544 4567788888887544 44554555544443331 22334456667777777776 667876444
Q ss_pred HHHHHHH
Q 007426 240 AIQMLNF 246 (604)
Q Consensus 240 AAeaL~~ 246 (604)
..+.+..
T Consensus 691 ~~~~f~~ 697 (1204)
T 3a6p_A 691 DVDAFIA 697 (1204)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444433
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=39.31 E-value=1.7e+02 Score=33.51 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred cchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC-----CCCHHHHHH-HHHHHHHhhcC-Cccchh-----
Q 007426 126 KKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR-----FASDEMVNK-VCQNVAGALEE-KSTQTN----- 193 (604)
Q Consensus 126 ~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr-----~Ap~elv~r-lc~Rv~kaL~~-ks~qtk----- 193 (604)
+..-++. ||.=|..-|+...=-+-=||||+|..++-.-... ....+++-| +|-=..-.+++ -+-+.+
T Consensus 168 ~~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRE 246 (800)
T 3oc3_A 168 PIENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRD 246 (800)
T ss_dssp CCCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHH
T ss_pred CCCCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHH
Confidence 3456677 9999999999998888999999999988653210 011133333 22223333333 222332
Q ss_pred hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCC
Q 007426 194 SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSD 273 (604)
Q Consensus 194 Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfD 273 (604)
+=-++.|++ .+-+.- -..|...+..+. ...|+.|-++--.|..+ .+.+.. +..++.++-.+=.|
T Consensus 247 TaAQtLGaL-~hLp~e-----~~IL~qLV~~l~----~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 247 AAAYLLSRI-YPLIGP-----NDIIEQLVGFLD----SGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHH-TTTSCS-----CCHHHHHTTGGG----CSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HhCChh-----HHHHHHHHhhcC----CCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCC
Confidence 223344444 332211 112222233334 68999999999999887 233332 77777777777778
Q ss_pred CccchhHHHHHHH
Q 007426 274 QMAYVKGASLEAL 286 (604)
Q Consensus 274 KVk~VR~am~eAL 286 (604)
.--.||.++.+||
T Consensus 311 ~DDDVRAVAAetL 323 (800)
T 3oc3_A 311 PDEDIKLLSAELL 323 (800)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHh
Confidence 8889999998886
No 105
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.19 E-value=2.2e+02 Score=33.38 Aligned_cols=153 Identities=10% Similarity=0.106 Sum_probs=95.7
Q ss_pred HHHHHHHHhhc-CCCChhHHHhhhccCCC-CCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhH
Q 007426 27 MKALKSYVKDL-DSKAIPLFLAQVSETKE-NGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQ 103 (604)
Q Consensus 27 ~~eLesiak~L-d~dtlP~FLscV~dtd~-~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR 103 (604)
..-|..+...+ .++.++.||..|.++-. ..+-.|--.|..+.++--.|=-.+.+.- .+|+..+++-|.|+. .+-||
T Consensus 783 ~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q-~~EVR 861 (997)
T 1vsy_5 783 VRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQ-FVEVR 861 (997)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSSSHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSS-CHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCc-cHHHH
Confidence 33455554333 55568889999987654 2233677777777777776654444443 578888888889986 14589
Q ss_pred HHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc------------ccchhhHHHHHHHHHHhccCCCCCCCH
Q 007426 104 QACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG------------SQESLTAGAALCLKALVDSDNWRFASD 171 (604)
Q Consensus 104 ~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~------------qqe~vQsGAALCLAAlVEs~nwr~Ap~ 171 (604)
..=+.+.+.|-++.. +... +..+..-+.+-+.. +....--||.|.|.|+|.+.....+|+
T Consensus 862 e~Aa~tLsgll~c~~----~~~~----~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P 933 (997)
T 1vsy_5 862 VRAASILSDIVHNWK----EEQP----LLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLP 933 (997)
T ss_dssp HHHHHHHHHHHHSCC----SHHH----HHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCC
T ss_pred HHHHHHHHHHHHcCC----chhh----HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 988888888877731 0000 11122222222111 111235799999999999988765556
Q ss_pred HHHHHHHHHHHHhhcCC
Q 007426 172 EMVNKVCQNVAGALEEK 188 (604)
Q Consensus 172 elv~rlc~Rv~kaL~~k 188 (604)
+-+.++...++..+.++
T Consensus 934 ~w~P~~l~~La~~~~~~ 950 (997)
T 1vsy_5 934 PWIPKNLSNLSSWARTS 950 (997)
T ss_dssp THHHHHHHHHHTTSSSC
T ss_pred cccHHHHHHHHHHhCCC
Confidence 67777778888777775
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.63 E-value=3.2e+02 Score=25.02 Aligned_cols=71 Identities=7% Similarity=-0.064 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch-----hhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHH
Q 007426 217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI-----FSELELIIEGMENCQSDQMAYVKGASLEALQTAKR 291 (604)
Q Consensus 217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L-----~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~ 291 (604)
.++++..-|. ..|-....-|...|..+++..+.... ..+....++.+. .+.| +.||+-+.+.++.|..
T Consensus 53 A~ral~krl~----~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~-~~~~--~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVN----HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK-NKAH--PKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH-TTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc-cCCC--HHHHHHHHHHHHHHHH
Confidence 3455555555 56777778899999999988865433 223344555554 2233 4899999999999997
Q ss_pred hhh
Q 007426 292 IAA 294 (604)
Q Consensus 292 Ia~ 294 (604)
--.
T Consensus 126 ~f~ 128 (163)
T 1x5b_A 126 EFQ 128 (163)
T ss_dssp HTT
T ss_pred Hhc
Confidence 533
No 107
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.25 E-value=1.6e+02 Score=34.83 Aligned_cols=77 Identities=5% Similarity=0.073 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHhhccCC---CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHH
Q 007426 80 PQIDSIMTTITKTLASS---AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALC 156 (604)
Q Consensus 80 PhL~KImstIVRRLsDs---dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALC 156 (604)
++|++||..++.-.-.. +.-..++...-=++|...+++.+ .-+.+..++.-|++.|.+.++.||.-||-|
T Consensus 517 ~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~a 589 (1073)
T 3gjx_A 517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-------HWKFLKTVVNKLFEFMHETHDGVQDMACDT 589 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHH
T ss_pred chHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 67888888888643222 21111232111266666666542 234577788888999988899999999999
Q ss_pred HHHHhcc
Q 007426 157 LKALVDS 163 (604)
Q Consensus 157 LAAlVEs 163 (604)
++...+.
T Consensus 590 f~~i~~~ 596 (1073)
T 3gjx_A 590 FIKIAQK 596 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=24.28 E-value=4.8e+02 Score=25.07 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=89.2
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccC
Q 007426 86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSD 164 (604)
Q Consensus 86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~ 164 (604)
+..+|+-|++++....++...+.++.-|+.. + .+-+..|+. -.+.||.+.|...++.+|--||-+|.-+.-.+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~--~----~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ--K----SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH--C----HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC--C----cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 3456778887774222343333455556532 1 111223332 25689999999988899999999998886421
Q ss_pred CCCCCCHHHHHH--HHHHHHHhhcC-Cccchhh-HHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCC-----------
Q 007426 165 NWRFASDEMVNK--VCQNVAGALEE-KSTQTNS-HMGLVMALAKHNALIVEAYARLLIQSGLRILNAGP----------- 229 (604)
Q Consensus 165 nwr~Ap~elv~r--lc~Rv~kaL~~-ks~qtkA-hl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~----------- 229 (604)
. .-...+.+ -.|.+.++|+. ++...+- -.+++..|+... .+=..+++.++..|-.-+
T Consensus 84 ~---~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-----~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 84 N---DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-----KLKNLMITEALLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp H---HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-----GGHHHHHHHHHHHHCCCCCHHHHCCCGGG
T ss_pred H---HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-----hhHHHHHhccHHHHHHHHhccccCCcccc
Confidence 0 01122222 55678888873 4433331 122333444332 111122233333332211
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhhcC---CCchhhh---HHHHHHHHHhc
Q 007426 230 -----GEANSQKRLLAIQMLNFLMKSLD---PRSIFSE---LELIIEGMENC 270 (604)
Q Consensus 230 -----~ssDWq~RKAAAeaL~~la~~~d---~~~L~se---~~S~I~~LE~c 270 (604)
+..|-..+.-|+-+|..|. +.+ +..|... +.+.++.+..+
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLs-s~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMS-SAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHT-TSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHh-cCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 1235578888999998875 333 3334322 35666666665
No 109
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.76 E-value=4.2e+02 Score=23.77 Aligned_cols=107 Identities=9% Similarity=0.120 Sum_probs=66.7
Q ss_pred HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC-
Q 007426 176 KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR- 254 (604)
Q Consensus 176 rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~- 254 (604)
+.-..+..+...+..-.+..+.-+..++..|.. +...++......+. ...-..|..+--.+.+|.......
T Consensus 6 ~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~----~~~~IV~~~~~~i~----k~~~~~KL~~LYL~DsIvrn~~~k~ 77 (145)
T 3d9j_A 6 TFNSELYSLNDYKPPISKAKMTQITKAAIKAIK----FYKHVVQSVEKFIQ----KCKPEYKVPGLYVIDSIVRQSRHQF 77 (145)
T ss_dssp HHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGG----GHHHHHHHHHHHHH----HSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----hCCccceeehhhhhHHHHHHhhhhc
Confidence 333444444343433455556666555555532 44556777776666 346678899999999998777531
Q ss_pred -----chhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHH
Q 007426 255 -----SIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKR 291 (604)
Q Consensus 255 -----~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~ 291 (604)
....++ .-+..+|+.. +.....+|..+.+-+.+|++
T Consensus 78 ~~~~~~f~~~F~~~L~~~f~~~-~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 78 GQEKDVFAPRFSNNIISTFQNL-YRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp CTTTCSHHHHHHHHHHHHHHHH-TSSCGGGHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcC
Confidence 233333 4455666432 24569999999999999984
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=21.86 E-value=50 Score=36.21 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCchhhh--HHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426 231 EANSQKRLLAIQMLNFLMKSLDPRSIFSE--LELIIEGMENCQSDQMAYVKGASLEALQ 287 (604)
Q Consensus 231 ssDWq~RKAAAeaL~~la~~~d~~~L~se--~~S~I~~LE~cRfDKVk~VR~am~eALq 287 (604)
+.|...|..|+.+|..|+. +.....-. ..-+..+|+.+-.|.-..||.++..||.
T Consensus 45 S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLr 101 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILK 101 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999874 32322222 2345567899999999999999888874
No 111
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.02 E-value=6.5e+02 Score=25.66 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=95.1
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccC
Q 007426 85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSD 164 (604)
Q Consensus 85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~ 164 (604)
.+..+..-|.|.|+-+ +-. +.-+|-.-+.+ .+..-...++.-++-=+++.+-+++|-+..-|.=||..+++..
T Consensus 34 ~l~~L~~LL~dkD~~v--k~r---aL~~LeellK~--~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 34 ALFLILELAGEDDETT--RLR---AFVALGEILKR--ADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHTTSSCHHH--HHH---HHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccchHH--HHH---HHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 4566666678888533 322 22222211111 0111223345556666777778899999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007426 165 NWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQML 244 (604)
Q Consensus 165 nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL 244 (604)
+ -+++.+.++..-+...++++.. .-.+-++-.|.++.... --..++.-..+.|. +.|-+..-||.-+|
T Consensus 107 p---L~~~~y~Kl~~aL~dlik~~~~--il~~eaae~Lgklkv~~---~~~~V~~~l~sLl~----Skd~~vK~agl~~L 174 (265)
T 3b2a_A 107 P---MGSKTFLKAAKTLVSLLESPDD--MMRIETIDVLSKLQPLE---DSKLVRTYINELVV----SPDLYTKVAGFCLF 174 (265)
T ss_dssp C---BCHHHHHHHHHHHHHHTTSCCH--HHHHHHHHHHHHCCBSC---CCHHHHHHHHHHHT----CSSHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHhCcCCccc---chHHHHHHHHHHHh----CCChhHHHHHHHHH
Confidence 4 5788888888888888886541 11223333333332111 11223344445554 89999999999999
Q ss_pred HHHHhhcC----CCchhhhHHHHH
Q 007426 245 NFLMKSLD----PRSIFSELELII 264 (604)
Q Consensus 245 ~~la~~~d----~~~L~se~~S~I 264 (604)
-.++...+ -..|.+|+...+
T Consensus 175 ~eia~~S~D~~i~~~I~~eI~elL 198 (265)
T 3b2a_A 175 LNMLNSSADSGHLTLILDEIPSLL 198 (265)
T ss_dssp HHHGGGCSSCCCGGGTTTTHHHHH
T ss_pred HHhhcccCCHHHHHHHHHHHHHHH
Confidence 99886443 124555555544
No 112
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.16 E-value=3.5e+02 Score=27.61 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhc--CCCChhHHHhhhccCCCCC-CCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhh
Q 007426 26 AMKALKSYVKDL--DSKAIPLFLAQVSETKENG-SVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPL 102 (604)
Q Consensus 26 A~~eLesiak~L--d~dtlP~FLscV~dtd~~~-s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~v 102 (604)
|++-|+.+.++. +++++-.....+.|.-..+ ...+.|+...++-| .++-..++++..|.+-|.+.+ ..+
T Consensus 95 A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd--~~v 166 (265)
T 3b2a_A 95 ALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPD--LYT 166 (265)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSS--HHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCC--hhH
Confidence 777777888876 4566777777777764433 36677777777776 677778899999999886666 346
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhh
Q 007426 103 QQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLT 150 (604)
Q Consensus 103 R~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQ 150 (604)
+.|--.+.-.+|.|..||.. +..+.+=+.|-|-+++..+.
T Consensus 167 K~agl~~L~eia~~S~D~~i--------~~~I~~eI~elL~~eD~~l~ 206 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSSADSGH--------LTLILDEIPSLLQNDNEFIV 206 (265)
T ss_dssp HHHHHHHHHHHGGGCSSCCC--------GGGTTTTHHHHHTCSCHHHH
T ss_pred HHHHHHHHHHhhcccCCHHH--------HHHHHHHHHHHHcCCCHHHH
Confidence 67777777888888766644 45566777788888865553
Done!