Query 007431
Match_columns 604
No_of_seqs 1180 out of 2436
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 01:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.6E-42 5.5E-47 360.4 44.9 293 301-604 43-340 (340)
2 1vyh_C Platelet-activating fac 100.0 1.1E-42 3.7E-47 371.5 42.0 287 306-604 101-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 6.1E-42 2.1E-46 353.5 43.2 291 304-604 23-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 6.6E-41 2.3E-45 350.5 44.9 292 303-604 54-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 5.6E-41 1.9E-45 343.1 40.4 288 304-601 4-297 (304)
6 4ery_A WD repeat-containing pr 100.0 3.8E-40 1.3E-44 337.2 45.4 293 303-604 13-309 (312)
7 3iz6_a 40S ribosomal protein R 100.0 9.1E-42 3.1E-46 360.4 33.2 296 302-604 55-372 (380)
8 3frx_A Guanine nucleotide-bind 100.0 3.7E-39 1.3E-43 332.0 43.0 288 304-604 8-314 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-39 1.8E-43 334.6 40.0 295 304-604 6-332 (345)
10 4gqb_B Methylosome protein 50; 100.0 3E-39 1E-43 336.9 35.5 282 311-604 28-328 (344)
11 1nr0_A Actin interacting prote 100.0 9.1E-39 3.1E-43 358.7 40.4 310 273-604 163-608 (611)
12 1nr0_A Actin interacting prote 100.0 8.3E-39 2.8E-43 359.1 40.0 292 304-604 138-564 (611)
13 4g56_B MGC81050 protein; prote 100.0 2.4E-39 8.1E-44 339.2 32.4 283 310-604 39-340 (357)
14 4aow_A Guanine nucleotide-bind 100.0 1.6E-37 5.4E-42 319.8 44.0 289 304-604 29-334 (340)
15 1erj_A Transcriptional repress 100.0 6.2E-38 2.1E-42 332.5 42.0 290 305-604 57-386 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 1E-37 3.4E-42 324.5 41.0 288 304-604 12-337 (343)
17 3zwl_B Eukaryotic translation 100.0 2.2E-37 7.7E-42 321.4 43.3 288 304-604 23-343 (369)
18 2hes_X YDR267CP; beta-propelle 100.0 3.3E-37 1.1E-41 319.0 41.2 292 303-604 4-325 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 1E-36 3.5E-41 338.0 44.6 301 272-604 276-577 (577)
20 3gre_A Serine/threonine-protei 100.0 8.9E-38 3.1E-42 334.7 32.8 299 302-604 51-437 (437)
21 1sq9_A Antiviral protein SKI8; 100.0 4.9E-37 1.7E-41 323.7 35.8 293 304-604 7-392 (397)
22 4a11_B DNA excision repair pro 100.0 7.3E-37 2.5E-41 322.4 37.1 299 303-604 33-362 (408)
23 3dm0_A Maltose-binding peripla 100.0 2.3E-36 8E-41 344.1 42.7 289 304-604 373-690 (694)
24 3ei3_B DNA damage-binding prot 100.0 1.3E-36 4.3E-41 320.0 37.2 291 302-604 62-379 (383)
25 1gxr_A ESG1, transducin-like e 100.0 1.6E-35 5.4E-40 303.8 42.9 283 307-604 45-334 (337)
26 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-35 4.5E-40 301.4 41.0 283 301-604 6-293 (313)
27 2ymu_A WD-40 repeat protein; u 100.0 1.2E-35 4E-40 329.5 44.1 303 271-604 234-536 (577)
28 1r5m_A SIR4-interacting protei 100.0 3.1E-36 1.1E-40 319.0 36.6 326 260-604 47-422 (425)
29 3i2n_A WD repeat-containing pr 100.0 2.7E-36 9.4E-41 312.4 34.6 297 302-604 7-350 (357)
30 2ynn_A Coatomer subunit beta'; 100.0 7E-36 2.4E-40 305.3 36.8 249 348-604 4-256 (304)
31 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-36 1.6E-40 312.8 34.8 284 309-604 4-358 (372)
32 1vyh_C Platelet-activating fac 100.0 6.5E-36 2.2E-40 319.0 35.6 274 266-563 116-410 (410)
33 3ow8_A WD repeat-containing pr 100.0 2.7E-35 9.1E-40 303.7 38.1 272 270-563 48-320 (321)
34 3k26_A Polycomb protein EED; W 100.0 6.2E-36 2.1E-40 310.5 30.9 290 307-604 12-363 (366)
35 3frx_A Guanine nucleotide-bind 100.0 5.4E-35 1.8E-39 300.9 36.8 281 271-565 31-318 (319)
36 3dwl_C Actin-related protein 2 100.0 1E-36 3.5E-41 319.5 24.2 287 308-604 6-376 (377)
37 4e54_B DNA damage-binding prot 100.0 2.3E-36 7.7E-41 324.8 26.2 296 303-604 109-427 (435)
38 3mmy_A MRNA export factor; mRN 100.0 6.8E-35 2.3E-39 302.5 35.7 301 298-603 24-342 (368)
39 2pm9_A Protein WEB1, protein t 100.0 5.6E-36 1.9E-40 317.3 24.8 308 277-604 42-411 (416)
40 1got_B GT-beta; complex (GTP-b 100.0 4.3E-34 1.5E-38 296.8 38.4 278 261-561 58-340 (340)
41 4ggc_A P55CDC, cell division c 100.0 8.2E-34 2.8E-38 289.1 38.8 291 299-604 7-312 (318)
42 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-34 1.2E-38 330.8 39.5 291 304-604 4-299 (814)
43 4aez_A CDC20, WD repeat-contai 100.0 4.9E-34 1.7E-38 303.0 37.1 280 308-604 86-377 (401)
44 4gga_A P55CDC, cell division c 100.0 9.4E-34 3.2E-38 302.8 39.4 289 301-604 89-392 (420)
45 3iz6_a 40S ribosomal protein R 100.0 1E-34 3.5E-39 306.3 31.5 266 298-566 93-377 (380)
46 2pbi_B Guanine nucleotide-bind 100.0 1.2E-33 4E-38 295.5 37.4 283 259-561 65-354 (354)
47 4gqb_B Methylosome protein 50; 100.0 4.6E-34 1.6E-38 297.6 34.0 248 308-567 77-334 (344)
48 1r5m_A SIR4-interacting protei 100.0 1.1E-33 3.8E-38 299.4 37.4 281 310-604 42-358 (425)
49 3vl1_A 26S proteasome regulato 100.0 3E-34 1E-38 305.0 31.8 316 265-604 63-416 (420)
50 2pm9_A Protein WEB1, protein t 100.0 6.6E-35 2.3E-39 309.1 25.9 285 312-604 11-334 (416)
51 3v7d_B Cell division control p 100.0 4.7E-33 1.6E-37 300.4 40.8 299 274-603 136-459 (464)
52 1pgu_A Actin interacting prote 100.0 3E-33 1E-37 311.5 40.1 305 273-604 176-611 (615)
53 3sfz_A APAF-1, apoptotic pepti 100.0 3E-33 1E-37 338.2 43.3 291 305-604 607-910 (1249)
54 2pm7_B Protein transport prote 100.0 1.4E-33 4.8E-38 287.2 33.6 255 306-563 2-284 (297)
55 1yfq_A Cell cycle arrest prote 100.0 2.5E-34 8.5E-39 296.4 28.2 282 306-599 4-315 (342)
56 3vl1_A 26S proteasome regulato 100.0 2.1E-34 7.3E-39 306.1 28.2 279 314-604 57-362 (420)
57 3v7d_B Cell division control p 100.0 1.2E-32 4.2E-37 297.1 42.2 281 305-604 113-418 (464)
58 2xzm_R RACK1; ribosome, transl 100.0 3.2E-33 1.1E-37 290.5 35.9 282 269-565 38-341 (343)
59 4h5i_A Guanine nucleotide-exch 100.0 3.8E-34 1.3E-38 300.6 28.8 281 313-604 14-340 (365)
60 1gxr_A ESG1, transducin-like e 100.0 2.4E-33 8.4E-38 287.4 33.1 278 312-604 8-293 (337)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-32 7.5E-37 294.0 42.1 283 301-604 147-439 (445)
62 1erj_A Transcriptional repress 100.0 1.1E-32 3.9E-37 292.0 38.5 243 312-564 122-389 (393)
63 3bg1_A Protein SEC13 homolog; 100.0 3.9E-34 1.3E-38 294.1 26.2 252 307-604 7-290 (316)
64 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.2E-33 2.8E-37 287.8 35.9 292 264-571 22-342 (345)
65 2hes_X YDR267CP; beta-propelle 100.0 1.2E-32 4E-37 284.9 35.7 275 272-564 26-328 (330)
66 3dw8_B Serine/threonine-protei 100.0 8.9E-33 3E-37 295.9 34.5 279 311-603 26-442 (447)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-32 4.5E-37 332.5 39.1 300 298-604 642-1031(1249)
68 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-32 7.1E-37 319.7 39.4 197 261-478 20-246 (902)
69 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-32 5.4E-37 294.5 35.4 273 307-604 127-411 (435)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.7E-32 2.6E-36 289.8 40.7 274 305-604 110-388 (445)
71 2j04_B YDR362CP, TAU91; beta p 100.0 5E-34 1.7E-38 313.3 23.6 314 273-604 176-514 (524)
72 1pgu_A Actin interacting prote 100.0 3.6E-32 1.2E-36 302.8 38.5 288 304-604 54-363 (615)
73 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-32 4.7E-37 281.8 31.4 292 305-604 3-334 (351)
74 4g56_B MGC81050 protein; prote 100.0 5.5E-33 1.9E-37 290.8 28.3 271 319-604 11-298 (357)
75 3jrp_A Fusion protein of prote 100.0 2.7E-32 9.1E-37 284.4 33.3 260 304-565 2-288 (379)
76 4aow_A Guanine nucleotide-bind 100.0 2.5E-31 8.6E-36 273.4 38.7 295 256-566 36-339 (340)
77 4ery_A WD repeat-containing pr 100.0 1.8E-31 6.1E-36 272.6 37.3 251 346-604 12-265 (312)
78 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-32 5.4E-37 320.7 32.7 331 265-604 105-658 (902)
79 2pm7_B Protein transport prote 100.0 3.5E-32 1.2E-36 276.9 30.7 251 350-604 2-282 (297)
80 3dm0_A Maltose-binding peripla 100.0 1.2E-31 4.1E-36 305.2 38.1 280 270-563 395-692 (694)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-32 5.3E-37 291.2 26.1 282 315-604 36-339 (402)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-30 4E-35 301.3 35.9 317 262-604 17-383 (814)
83 1sq9_A Antiviral protein SKI8; 100.0 5.5E-31 1.9E-35 277.3 30.0 284 271-566 27-397 (397)
84 3k26_A Polycomb protein EED; W 100.0 2.7E-31 9.1E-36 275.5 26.1 246 312-564 68-366 (366)
85 3zwl_B Eukaryotic translation 100.0 3.7E-30 1.3E-34 266.9 34.5 278 264-567 38-349 (369)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-30 1.6E-34 276.6 35.1 281 313-603 4-387 (450)
87 3jrp_A Fusion protein of prote 100.0 1.1E-30 3.8E-35 272.1 28.8 253 348-604 2-284 (379)
88 1k8k_C P40, ARP2/3 complex 41 100.0 6.4E-30 2.2E-34 266.3 33.0 283 264-566 14-363 (372)
89 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-31 7.8E-36 292.1 21.8 273 302-604 123-425 (524)
90 3i2n_A WD repeat-containing pr 100.0 1.6E-30 5.3E-35 269.0 26.6 272 279-567 43-356 (357)
91 4aez_A CDC20, WD repeat-contai 100.0 2.5E-29 8.7E-34 266.6 36.5 271 277-572 110-388 (401)
92 4a11_B DNA excision repair pro 100.0 1.4E-29 4.7E-34 266.6 30.2 327 261-604 46-402 (408)
93 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-29 7.2E-34 263.3 31.2 280 302-604 8-333 (355)
94 4gga_A P55CDC, cell division c 100.0 5.8E-29 2E-33 265.6 34.8 264 303-580 135-411 (420)
95 3jro_A Fusion protein of prote 100.0 6.6E-30 2.2E-34 293.6 28.2 257 306-564 2-285 (753)
96 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-29 5.2E-34 262.5 28.4 270 321-603 44-329 (343)
97 3dwl_C Actin-related protein 2 100.0 1.1E-30 3.8E-35 273.5 19.7 244 353-604 7-278 (377)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 2.3E-29 7.9E-34 266.8 28.8 276 274-567 51-345 (402)
99 3ei3_B DNA damage-binding prot 100.0 3.5E-29 1.2E-33 263.0 28.8 250 345-604 61-336 (383)
100 2xyi_A Probable histone-bindin 100.0 2.4E-29 8.3E-34 269.7 28.0 255 306-565 121-411 (430)
101 3gre_A Serine/threonine-protei 100.0 1E-30 3.4E-35 279.9 17.1 266 321-604 35-356 (437)
102 2xyi_A Probable histone-bindin 100.0 7E-29 2.4E-33 266.0 30.8 247 351-604 122-407 (430)
103 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-28 8.8E-33 247.5 33.3 270 272-572 31-304 (313)
104 3bws_A Protein LP49; two-domai 100.0 2.4E-28 8.3E-33 260.6 34.3 285 304-604 114-429 (433)
105 1l0q_A Surface layer protein; 100.0 6.6E-28 2.3E-32 253.7 37.1 265 326-604 2-272 (391)
106 3dw8_B Serine/threonine-protei 100.0 1.1E-29 3.8E-34 271.8 23.2 246 355-604 26-370 (447)
107 4e54_B DNA damage-binding prot 100.0 2.1E-29 7E-34 270.5 24.5 276 272-568 134-434 (435)
108 1yfq_A Cell cycle arrest prote 100.0 4.1E-29 1.4E-33 257.3 25.8 241 351-604 5-279 (342)
109 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-28 8.7E-33 261.8 31.2 265 302-585 162-434 (435)
110 1l0q_A Surface layer protein; 100.0 5.8E-27 2E-31 246.4 39.5 260 303-577 22-288 (391)
111 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-28 1.6E-32 248.1 29.1 296 261-572 14-345 (351)
112 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-29 1.3E-33 269.9 21.7 265 310-604 12-294 (588)
113 4ggc_A P55CDC, cell division c 100.0 3.4E-27 1.2E-31 240.0 34.5 262 278-566 43-317 (318)
114 4h5i_A Guanine nucleotide-exch 100.0 5.6E-27 1.9E-31 245.9 34.4 272 279-564 42-343 (365)
115 2w18_A PALB2, fancn, partner a 100.0 4.8E-27 1.6E-31 239.2 32.5 288 304-604 26-354 (356)
116 3jro_A Fusion protein of prote 100.0 1.2E-28 4.2E-33 283.0 22.7 251 350-604 2-282 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-27 5.1E-32 249.2 26.7 247 340-604 3-268 (355)
118 3mmy_A MRNA export factor; mRN 100.0 5.2E-27 1.8E-31 243.0 27.6 276 262-562 43-344 (368)
119 4gq1_A NUP37; propeller, trans 100.0 1.3E-27 4.5E-32 253.2 22.3 256 310-600 86-383 (393)
120 3bg1_A Protein SEC13 homolog; 100.0 9E-28 3.1E-32 246.5 19.7 245 259-516 14-292 (316)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-27 6.1E-32 246.9 19.9 228 364-604 43-289 (343)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.6E-26 1.9E-30 244.7 30.0 251 308-563 97-390 (450)
123 2j04_A TAU60, YPL007P, hypothe 99.9 6.8E-27 2.3E-31 252.5 22.7 288 261-596 18-350 (588)
124 3bws_A Protein LP49; two-domai 99.9 3.7E-24 1.3E-28 228.2 35.5 243 308-564 164-432 (433)
125 1nir_A Nitrite reductase; hemo 99.9 1.7E-23 5.7E-28 231.0 35.2 293 302-604 168-511 (543)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.8E-24 3.3E-28 225.2 28.5 264 307-585 111-407 (415)
127 2w18_A PALB2, fancn, partner a 99.9 1.7E-23 5.7E-28 213.1 28.7 179 334-515 155-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 2.5E-23 8.6E-28 229.6 30.6 274 321-604 145-455 (543)
129 4gq1_A NUP37; propeller, trans 99.9 8.9E-25 3E-29 231.4 17.9 237 266-516 97-388 (393)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-23 8.8E-28 221.9 28.3 275 314-604 63-384 (415)
131 3u4y_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 204.7 31.2 274 320-604 4-301 (331)
132 1ri6_A Putative isomerase YBHE 99.9 5.5E-22 1.9E-26 203.5 32.4 272 327-604 6-305 (343)
133 3vgz_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 198.6 37.5 272 312-597 39-334 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-22 7E-27 230.3 27.6 282 313-604 36-410 (741)
135 1pby_B Quinohemoprotein amine 99.9 1.6E-21 5.5E-26 199.5 30.1 261 327-604 2-307 (337)
136 2ojh_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 194.9 22.5 252 331-598 17-293 (297)
137 1ri6_A Putative isomerase YBHE 99.9 9.3E-20 3.2E-24 186.8 34.1 267 311-586 35-333 (343)
138 3u4y_A Uncharacterized protein 99.9 1E-19 3.4E-24 186.5 33.0 256 303-566 30-306 (331)
139 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-21 7E-26 221.2 21.9 277 315-604 18-390 (723)
140 3o4h_A Acylamino-acid-releasin 99.9 1.6E-20 5.3E-25 208.9 27.1 272 313-604 21-312 (582)
141 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-20 9.4E-25 211.5 29.4 274 314-604 82-432 (706)
142 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-20 7.1E-25 213.7 27.6 265 315-594 110-442 (741)
143 1k32_A Tricorn protease; prote 99.9 5E-20 1.7E-24 218.9 31.8 279 306-604 196-499 (1045)
144 1pby_B Quinohemoprotein amine 99.9 4E-20 1.4E-24 189.1 26.0 257 304-576 22-322 (337)
145 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-20 6.3E-25 213.0 25.2 271 316-598 28-378 (706)
146 3hfq_A Uncharacterized protein 99.9 4.6E-19 1.6E-23 183.2 32.9 263 335-603 15-313 (347)
147 3vgz_A Uncharacterized protein 99.9 3.4E-19 1.1E-23 183.8 31.2 243 356-604 39-300 (353)
148 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-19 1.1E-23 183.5 28.5 260 318-604 4-322 (349)
149 2ojh_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 180.0 24.9 238 307-555 35-293 (297)
150 1k32_A Tricorn protease; prote 99.8 3.4E-19 1.2E-23 211.7 29.7 275 312-604 294-634 (1045)
151 1xfd_A DIP, dipeptidyl aminope 99.8 1.8E-19 6.2E-24 205.1 26.1 284 304-597 48-431 (723)
152 3pe7_A Oligogalacturonate lyas 99.8 3.4E-19 1.2E-23 186.8 25.5 293 304-603 21-378 (388)
153 3scy_A Hypothetical bacterial 99.8 4.6E-18 1.6E-22 176.8 33.7 270 326-603 13-333 (361)
154 3hfq_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 176.4 30.6 252 310-568 36-323 (347)
155 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.9E-22 173.1 32.4 264 312-584 48-360 (361)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.2E-18 2.5E-22 176.2 28.2 274 328-604 4-338 (365)
157 1z68_A Fibroblast activation p 99.8 2.9E-18 1E-22 195.3 22.1 276 318-604 20-388 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 8.5E-18 2.9E-22 180.2 22.0 201 313-518 36-279 (434)
159 1jmx_B Amine dehydrogenase; ox 99.8 2E-16 6.7E-21 162.5 29.6 245 304-574 32-335 (349)
160 3o4h_A Acylamino-acid-releasin 99.8 4.7E-17 1.6E-21 180.8 23.2 231 357-604 21-273 (582)
161 3c5m_A Oligogalacturonate lyas 99.8 6.6E-17 2.3E-21 169.3 22.9 273 316-603 38-378 (396)
162 2oiz_A Aromatic amine dehydrog 99.7 8E-16 2.7E-20 160.7 30.6 268 304-587 42-359 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.5E-16 2.2E-20 161.3 29.1 247 312-565 38-342 (365)
164 1z68_A Fibroblast activation p 99.7 2E-17 6.9E-22 188.4 18.2 285 304-604 47-440 (719)
165 2oit_A Nucleoporin 214KDA; NH2 99.7 4.7E-16 1.6E-20 166.6 27.3 200 311-515 90-331 (434)
166 1q7f_A NHL, brain tumor CG1071 99.7 3.6E-15 1.2E-19 149.5 30.9 238 355-604 27-277 (286)
167 3azo_A Aminopeptidase; POP fam 99.7 7.5E-16 2.6E-20 173.5 27.0 286 307-603 17-363 (662)
168 1q7f_A NHL, brain tumor CG1071 99.7 6E-15 2.1E-19 147.9 30.5 241 311-565 27-281 (286)
169 2oiz_A Aromatic amine dehydrog 99.7 1.5E-15 5.2E-20 158.6 26.4 266 326-604 15-331 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.7 6.2E-16 2.1E-20 177.0 24.2 270 315-596 18-383 (740)
171 3fvz_A Peptidyl-glycine alpha- 99.7 4.5E-15 1.5E-19 152.7 27.0 240 357-604 23-319 (329)
172 3fvz_A Peptidyl-glycine alpha- 99.7 9.1E-15 3.1E-19 150.4 28.4 243 313-563 23-321 (329)
173 2dg1_A DRP35, lactonase; beta 99.7 3.9E-15 1.3E-19 152.6 24.7 269 314-597 6-300 (333)
174 3dsm_A Uncharacterized protein 99.7 4.2E-14 1.4E-18 145.5 31.0 254 314-583 44-319 (328)
175 2gop_A Trilobed protease; beta 99.7 5.3E-14 1.8E-18 144.8 29.4 254 315-603 16-327 (347)
176 2z2n_A Virginiamycin B lyase; 99.7 9.2E-13 3.1E-17 131.9 36.9 274 309-601 10-290 (299)
177 3pe7_A Oligogalacturonate lyas 99.6 6.2E-14 2.1E-18 146.5 27.1 250 345-604 18-326 (388)
178 3dsm_A Uncharacterized protein 99.6 1.6E-13 5.6E-18 141.1 29.2 256 335-604 16-299 (328)
179 4a5s_A Dipeptidyl peptidase 4 99.6 5.5E-15 1.9E-19 169.1 19.3 237 358-604 17-350 (740)
180 1qks_A Cytochrome CD1 nitrite 99.6 9E-13 3.1E-17 145.3 35.9 272 326-604 167-474 (567)
181 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-12 6.5E-17 142.7 38.3 296 303-604 187-535 (567)
182 3azo_A Aminopeptidase; POP fam 99.6 2.9E-14 1E-18 160.5 23.3 257 306-574 60-379 (662)
183 3e5z_A Putative gluconolactona 99.6 5E-13 1.7E-17 134.7 29.6 245 304-568 18-290 (296)
184 3e5z_A Putative gluconolactona 99.6 3.9E-13 1.3E-17 135.5 28.1 241 347-602 17-282 (296)
185 2xdw_A Prolyl endopeptidase; a 99.6 3.6E-13 1.2E-17 153.3 29.3 243 356-604 123-411 (710)
186 3c5m_A Oligogalacturonate lyas 99.6 6.7E-14 2.3E-18 146.2 20.0 249 342-604 16-326 (396)
187 3no2_A Uncharacterized protein 99.6 1.3E-12 4.5E-17 131.0 28.3 244 326-581 5-271 (276)
188 2dg1_A DRP35, lactonase; beta 99.6 7E-12 2.4E-16 128.2 32.8 243 304-555 35-301 (333)
189 1rwi_B Serine/threonine-protei 99.5 8E-13 2.7E-17 130.8 23.4 239 315-566 25-266 (270)
190 2qc5_A Streptogramin B lactona 99.5 3.2E-11 1.1E-15 120.6 35.0 274 311-603 17-296 (300)
191 2mad_H Methylamine dehydrogena 99.5 4.1E-11 1.4E-15 125.4 36.6 267 323-604 30-347 (373)
192 2xdw_A Prolyl endopeptidase; a 99.5 3.2E-12 1.1E-16 145.4 30.1 244 311-566 122-416 (710)
193 2gop_A Trilobed protease; beta 99.5 2E-12 7E-17 132.8 25.9 232 314-576 59-341 (347)
194 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8.2E-17 127.3 25.1 235 359-604 25-261 (270)
195 3sjl_D Methylamine dehydrogena 99.5 7.5E-12 2.6E-16 130.3 27.4 271 322-604 41-360 (386)
196 2mad_H Methylamine dehydrogena 99.5 8.8E-11 3E-15 122.9 35.8 251 304-571 58-357 (373)
197 3no2_A Uncharacterized protein 99.5 9.8E-12 3.3E-16 124.6 27.2 212 368-594 4-230 (276)
198 2bkl_A Prolyl endopeptidase; m 99.5 3.6E-13 1.2E-17 152.9 18.6 241 355-604 118-394 (695)
199 3sjl_D Methylamine dehydrogena 99.5 1.7E-11 6E-16 127.5 29.2 266 303-585 69-383 (386)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.2E-11 4.3E-16 124.9 27.4 242 354-604 14-296 (314)
201 2bkl_A Prolyl endopeptidase; m 99.5 1.4E-12 4.9E-17 147.9 21.4 243 311-567 118-400 (695)
202 2z2n_A Virginiamycin B lyase; 99.4 1.2E-10 4E-15 116.4 31.0 236 355-604 12-252 (299)
203 3g4e_A Regucalcin; six bladed 99.4 2.1E-10 7.3E-15 115.8 32.9 234 355-597 10-263 (297)
204 3hrp_A Uncharacterized protein 99.4 1.2E-10 4.3E-15 123.3 31.1 241 314-562 131-408 (409)
205 3c75_H MADH, methylamine dehyd 99.4 3.8E-11 1.3E-15 127.1 26.2 257 336-604 99-399 (426)
206 1yr2_A Prolyl oligopeptidase; 99.4 2.4E-11 8.1E-16 138.9 26.3 238 356-604 161-438 (741)
207 3c75_H MADH, methylamine dehyd 99.4 6.9E-11 2.4E-15 125.1 27.5 254 303-571 109-409 (426)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.8E-10 9.7E-15 114.8 30.2 240 310-564 14-299 (314)
209 2qe8_A Uncharacterized protein 99.4 2.5E-11 8.6E-16 125.4 22.5 262 314-598 17-312 (343)
210 3hrp_A Uncharacterized protein 99.4 4.9E-10 1.7E-14 118.7 31.9 240 358-603 131-406 (409)
211 1yr2_A Prolyl oligopeptidase; 99.3 1.3E-10 4.3E-15 132.9 26.8 243 311-566 160-443 (741)
212 2qc5_A Streptogramin B lactona 99.3 2E-09 6.8E-14 107.4 31.7 236 355-604 17-257 (300)
213 3dr2_A Exported gluconolactona 99.3 5.8E-10 2E-14 113.0 26.0 239 349-602 36-302 (305)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 4.1E-09 1.4E-13 107.9 31.3 226 359-597 50-293 (326)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.1E-09 1.1E-13 110.6 30.8 256 326-604 103-375 (376)
216 1xip_A Nucleoporin NUP159; bet 99.3 7.9E-11 2.7E-15 123.0 17.6 174 315-505 39-232 (388)
217 1kb0_A Quinohemoprotein alcoho 99.3 5.1E-10 1.7E-14 126.3 25.0 273 326-604 77-504 (677)
218 1mda_H Methylamine dehydrogena 99.3 2.4E-10 8.2E-15 118.9 20.0 260 302-585 55-366 (368)
219 3g4e_A Regucalcin; six bladed 99.2 6.1E-09 2.1E-13 104.9 28.5 230 309-553 8-261 (297)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5.2E-09 1.8E-13 108.9 28.8 259 326-604 53-334 (376)
221 3dr2_A Exported gluconolactona 99.2 3.2E-09 1.1E-13 107.4 26.4 238 304-561 35-303 (305)
222 1yiq_A Quinohemoprotein alcoho 99.2 6E-10 2.1E-14 126.0 22.8 273 326-604 70-502 (689)
223 1xip_A Nucleoporin NUP159; bet 99.2 1.8E-10 6.1E-15 120.3 16.8 176 359-551 39-231 (388)
224 1yiq_A Quinohemoprotein alcoho 99.2 3.7E-09 1.3E-13 119.5 28.3 259 326-595 121-537 (689)
225 1mda_H Methylamine dehydrogena 99.2 1.7E-09 5.9E-14 112.4 21.3 248 337-604 47-343 (368)
226 1kb0_A Quinohemoprotein alcoho 99.2 1.3E-08 4.5E-13 114.8 29.7 257 326-593 128-537 (677)
227 3iuj_A Prolyl endopeptidase; h 99.2 3E-09 1E-13 120.5 24.6 242 311-567 126-408 (693)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 7.1E-08 2.4E-12 98.6 32.5 223 314-554 49-292 (326)
229 3iuj_A Prolyl endopeptidase; h 99.1 2.7E-09 9.3E-14 120.9 21.0 238 355-604 126-402 (693)
230 2hz6_A Endoplasmic reticulum t 99.0 9.2E-11 3.1E-15 122.6 4.6 195 368-580 8-207 (369)
231 2ece_A 462AA long hypothetical 99.0 7.7E-08 2.6E-12 100.9 26.6 226 323-552 93-399 (462)
232 2ece_A 462AA long hypothetical 99.0 2E-07 6.9E-12 97.8 29.5 226 364-595 88-399 (462)
233 2hz6_A Endoplasmic reticulum t 99.0 9.1E-11 3.1E-15 122.6 4.0 223 326-566 9-238 (369)
234 3hxj_A Pyrrolo-quinoline quino 99.0 1.4E-08 4.6E-13 103.1 19.7 265 309-603 55-320 (330)
235 1kv9_A Type II quinohemoprotei 99.0 3.5E-08 1.2E-12 111.1 22.9 273 326-604 66-485 (668)
236 1npe_A Nidogen, entactin; glyc 98.9 1.6E-06 5.4E-11 85.5 31.0 248 328-586 3-261 (267)
237 1fwx_A Nitrous oxide reductase 98.9 8.2E-08 2.8E-12 104.1 23.1 229 362-595 89-406 (595)
238 2iwa_A Glutamine cyclotransfer 98.9 2.2E-07 7.4E-12 91.7 23.7 212 348-565 10-238 (266)
239 3hxj_A Pyrrolo-quinoline quino 98.9 7.8E-09 2.7E-13 104.9 12.4 250 327-604 31-281 (330)
240 2iwa_A Glutamine cyclotransfer 98.9 4.5E-07 1.6E-11 89.4 24.1 206 389-602 9-232 (266)
241 2qe8_A Uncharacterized protein 98.9 7.8E-08 2.7E-12 99.0 19.0 222 358-604 17-275 (343)
242 3nol_A Glutamine cyclotransfer 98.9 6.5E-07 2.2E-11 87.4 23.8 196 390-594 32-243 (262)
243 1w6s_A Methanol dehydrogenase 98.8 7.6E-07 2.6E-11 98.5 27.2 273 326-604 62-500 (599)
244 2ad6_A Methanol dehydrogenase 98.8 8.7E-07 3E-11 97.7 26.8 274 326-604 62-491 (571)
245 3nok_A Glutaminyl cyclase; bet 98.8 6.3E-07 2.1E-11 87.5 22.1 195 390-594 44-253 (268)
246 3nol_A Glutamine cyclotransfer 98.8 5.5E-07 1.9E-11 87.9 20.9 198 348-553 32-244 (262)
247 1flg_A Protein (quinoprotein e 98.8 3E-06 1E-10 93.6 28.8 274 326-604 68-513 (582)
248 1kv9_A Type II quinohemoprotei 98.8 3E-06 1E-10 95.3 29.3 259 326-595 117-520 (668)
249 2ad6_A Methanol dehydrogenase 98.8 2.4E-06 8.2E-11 94.2 27.7 238 326-575 115-505 (571)
250 3mbr_X Glutamine cyclotransfer 98.8 3.3E-06 1.1E-10 81.7 25.0 197 390-594 10-222 (243)
251 4a2l_A BT_4663, two-component 98.7 1.1E-05 3.8E-10 92.5 32.9 276 316-604 133-433 (795)
252 4a2l_A BT_4663, two-component 98.7 4.2E-05 1.4E-09 87.8 36.9 278 312-603 213-522 (795)
253 1fwx_A Nitrous oxide reductase 98.7 2.9E-07 9.9E-12 99.8 16.9 236 324-567 100-434 (595)
254 3mbr_X Glutamine cyclotransfer 98.7 2.9E-06 1E-10 82.0 22.2 197 348-552 10-222 (243)
255 3nok_A Glutaminyl cyclase; bet 98.7 4.1E-06 1.4E-10 81.7 23.0 190 304-505 44-253 (268)
256 1w6s_A Methanol dehydrogenase 98.7 1.4E-05 4.8E-10 88.3 30.0 255 328-594 123-534 (599)
257 2p4o_A Hypothetical protein; p 98.7 2.7E-05 9.1E-10 78.4 29.8 236 348-595 23-276 (306)
258 2fp8_A Strictosidine synthase; 98.6 1.2E-05 4E-10 81.6 26.8 235 358-604 19-310 (322)
259 1flg_A Protein (quinoprotein e 98.6 3.1E-05 1E-09 85.5 31.4 259 326-594 117-547 (582)
260 2p4o_A Hypothetical protein; p 98.6 2.2E-05 7.5E-10 79.1 27.4 239 301-555 20-279 (306)
261 2fp8_A Strictosidine synthase; 98.6 2.3E-05 7.8E-10 79.5 27.2 244 308-563 13-312 (322)
262 1npe_A Nidogen, entactin; glyc 98.6 3.4E-05 1.2E-09 75.8 27.7 222 314-546 36-263 (267)
263 3v9f_A Two-component system se 98.5 0.00018 6.2E-09 82.2 33.4 279 313-604 257-565 (781)
264 3v64_C Agrin; beta propeller, 98.4 0.00029 9.8E-09 72.4 30.3 247 313-573 33-284 (349)
265 3tc9_A Hypothetical hydrolase; 98.4 7.6E-05 2.6E-09 79.2 26.0 240 359-603 138-426 (430)
266 3v65_B Low-density lipoprotein 98.4 0.00032 1.1E-08 73.1 29.6 255 315-583 78-337 (386)
267 1ijq_A LDL receptor, low-densi 98.4 0.0015 5.1E-08 66.0 33.8 228 336-572 10-246 (316)
268 3tc9_A Hypothetical hydrolase; 98.4 0.00016 5.4E-09 76.7 27.5 241 315-562 138-428 (430)
269 1k3i_A Galactose oxidase precu 98.3 1.2E-05 4.2E-10 90.1 18.7 270 318-596 190-530 (656)
270 3v9f_A Two-component system se 98.3 0.00085 2.9E-08 76.6 33.9 274 314-604 211-521 (781)
271 2xbg_A YCF48-like protein; pho 98.3 0.0039 1.3E-07 63.1 34.8 272 313-604 35-319 (327)
272 3p5b_L Low density lipoprotein 98.3 0.0021 7.2E-08 67.2 33.6 245 327-581 84-337 (400)
273 4hw6_A Hypothetical protein, I 98.3 0.00027 9.3E-09 74.9 26.4 239 359-603 140-429 (433)
274 4hw6_A Hypothetical protein, I 98.3 0.00047 1.6E-08 73.1 27.9 243 315-563 140-432 (433)
275 1ijq_A LDL receptor, low-densi 98.2 0.0016 5.5E-08 65.7 30.1 221 372-603 4-234 (316)
276 2xzh_A Clathrin heavy chain 1; 98.2 0.0051 1.8E-07 61.4 31.5 252 336-600 49-325 (365)
277 3v64_C Agrin; beta propeller, 98.2 0.0017 6E-08 66.5 29.9 230 361-602 37-270 (349)
278 3sov_A LRP-6, low-density lipo 98.1 0.0024 8.1E-08 64.6 28.5 229 335-572 12-246 (318)
279 3v65_B Low-density lipoprotein 98.1 0.0011 3.7E-08 69.1 26.7 230 362-603 81-314 (386)
280 3kya_A Putative phosphatase; s 98.1 0.00077 2.6E-08 72.1 25.2 249 316-569 141-480 (496)
281 1k3i_A Galactose oxidase precu 98.1 0.00014 4.7E-09 81.6 20.4 237 312-553 241-530 (656)
282 2xe4_A Oligopeptidase B; hydro 98.0 0.00062 2.1E-08 77.5 24.6 197 311-515 170-398 (751)
283 3m0c_C LDL receptor, low-densi 98.0 0.0071 2.4E-07 68.8 32.9 229 335-572 403-640 (791)
284 3p5b_L Low density lipoprotein 98.0 0.0034 1.2E-07 65.6 28.2 222 371-603 85-316 (400)
285 3qqz_A Putative uncharacterize 98.0 0.0071 2.4E-07 58.9 28.2 203 307-515 20-251 (255)
286 3qqz_A Putative uncharacterize 98.0 0.0043 1.5E-07 60.4 26.4 205 352-562 21-251 (255)
287 1bpo_A Protein (clathrin); cla 98.0 0.023 7.9E-07 58.9 34.8 252 336-600 48-324 (494)
288 3sov_A LRP-6, low-density lipo 97.8 0.0032 1.1E-07 63.6 22.7 216 378-603 12-234 (318)
289 3s94_A LRP-6, low-density lipo 97.8 0.031 1.1E-06 61.8 32.4 281 314-602 84-418 (619)
290 3amr_A 3-phytase; beta-propell 97.8 0.0033 1.1E-07 63.8 22.3 196 403-604 30-260 (355)
291 3ei3_A DNA damage-binding prot 97.8 0.016 5.6E-07 68.6 31.7 216 380-602 808-1057(1158)
292 3kya_A Putative phosphatase; s 97.8 0.0053 1.8E-07 65.6 24.6 239 360-603 141-471 (496)
293 3ei3_A DNA damage-binding prot 97.8 0.063 2.2E-06 63.6 36.0 231 305-550 504-753 (1158)
294 3amr_A 3-phytase; beta-propell 97.7 0.0073 2.5E-07 61.3 24.0 185 326-516 40-262 (355)
295 4a0p_A LRP6, LRP-6, low-densit 97.7 0.033 1.1E-06 61.7 31.6 227 334-572 13-245 (628)
296 2p9w_A MAL S 1 allergenic prot 97.7 0.012 4.2E-07 59.1 25.1 204 311-516 10-264 (334)
297 2p9w_A MAL S 1 allergenic prot 97.7 0.018 6.1E-07 57.9 26.2 210 355-566 10-267 (334)
298 2xe4_A Oligopeptidase B; hydro 97.7 0.0015 5.2E-08 74.3 19.7 174 424-603 202-394 (751)
299 3m0c_C LDL receptor, low-densi 97.6 0.019 6.5E-07 65.3 27.7 216 376-601 401-626 (791)
300 2vpj_A Kelch-like protein 12; 97.6 0.01 3.5E-07 58.8 22.1 228 326-566 15-280 (301)
301 3s94_A LRP-6, low-density lipo 97.5 0.032 1.1E-06 61.8 27.7 228 335-571 17-250 (619)
302 1n7d_A LDL receptor, low-densi 97.5 0.00023 8E-09 80.2 10.3 239 335-582 385-632 (699)
303 3ii7_A Kelch-like protein 7; p 97.5 0.023 7.7E-07 56.5 24.1 228 326-566 12-274 (306)
304 2xn4_A Kelch-like protein 2; s 97.5 0.018 6.2E-07 57.1 22.3 188 368-566 61-278 (302)
305 2ism_A Putative oxidoreductase 97.4 0.076 2.6E-06 54.2 27.3 233 357-598 30-337 (352)
306 2xbg_A YCF48-like protein; pho 97.4 0.061 2.1E-06 54.2 25.4 230 313-561 79-319 (327)
307 3sre_A PON1, serum paraoxonase 97.4 0.027 9.2E-07 57.6 22.3 207 359-572 51-308 (355)
308 2vpj_A Kelch-like protein 12; 97.3 0.013 4.3E-07 58.2 19.1 217 368-598 14-264 (301)
309 4a0p_A LRP6, LRP-6, low-densit 97.3 0.35 1.2E-05 53.4 37.4 156 314-475 80-238 (628)
310 4asc_A Kelch repeat and BTB do 97.3 0.032 1.1E-06 55.7 21.7 226 328-567 7-280 (315)
311 2ism_A Putative oxidoreductase 97.2 0.12 4.1E-06 52.7 25.1 227 313-552 30-333 (352)
312 2xn4_A Kelch-like protein 2; s 97.2 0.035 1.2E-06 55.0 20.4 215 370-598 17-262 (302)
313 3ii7_A Kelch-like protein 7; p 97.1 0.042 1.4E-06 54.5 20.4 214 370-597 13-257 (306)
314 1zgk_A Kelch-like ECH-associat 97.1 0.036 1.2E-06 55.2 19.9 189 368-567 70-290 (308)
315 3a9g_A Putative uncharacterize 97.1 0.18 6.1E-06 51.5 25.2 233 357-595 28-330 (354)
316 1n7d_A LDL receptor, low-densi 97.1 0.0022 7.5E-08 72.2 11.5 206 314-522 406-619 (699)
317 2be1_A Serine/threonine-protei 97.1 0.02 6.9E-07 58.1 17.4 197 370-569 11-236 (339)
318 2woz_A Kelch repeat and BTB do 97.1 0.11 3.7E-06 51.9 23.0 228 328-569 18-292 (318)
319 3a9g_A Putative uncharacterize 97.0 0.3 1E-05 49.8 26.7 228 313-552 28-330 (354)
320 3ott_A Two-component system se 96.9 0.18 6.2E-06 57.0 26.2 230 357-603 21-256 (758)
321 1xi4_A Clathrin heavy chain; a 96.9 0.043 1.5E-06 64.9 20.6 238 336-585 48-310 (1630)
322 1zgk_A Kelch-like ECH-associat 96.8 0.052 1.8E-06 54.0 17.9 217 368-598 24-273 (308)
323 2xzh_A Clathrin heavy chain 1; 96.7 0.54 1.9E-05 46.9 27.7 195 321-522 74-295 (365)
324 3ott_A Two-component system se 96.7 1.1 3.9E-05 50.3 34.1 298 277-600 28-346 (758)
325 4asc_A Kelch repeat and BTB do 96.7 0.095 3.2E-06 52.2 18.9 211 372-597 8-253 (315)
326 2g8s_A Glucose/sorbosone dehyd 96.4 0.61 2.1E-05 47.4 23.4 234 313-558 17-348 (353)
327 2be1_A Serine/threonine-protei 96.4 0.051 1.8E-06 55.1 14.9 194 326-522 10-236 (339)
328 2uvk_A YJHT; unknown function, 96.3 0.19 6.5E-06 50.9 18.7 220 368-598 19-327 (357)
329 1bpo_A Protein (clathrin); cla 96.2 1.4 4.9E-05 45.7 29.4 231 321-563 73-330 (494)
330 2g8s_A Glucose/sorbosone dehyd 96.1 1.5 5.1E-05 44.4 26.3 240 358-600 18-347 (353)
331 3sre_A PON1, serum paraoxonase 96.0 0.11 3.6E-06 53.1 15.0 156 445-604 51-249 (355)
332 2uvk_A YJHT; unknown function, 96.0 0.27 9.3E-06 49.7 18.3 236 326-571 20-349 (357)
333 3pbp_A Nucleoporin NUP82; beta 95.9 0.2 6.9E-06 51.9 16.3 137 423-560 41-208 (452)
334 3sbq_A Nitrous-oxide reductase 95.9 2.4 8.1E-05 45.4 27.2 245 328-577 72-431 (638)
335 3pbp_A Nucleoporin NUP82; beta 95.9 0.53 1.8E-05 48.8 19.1 146 452-601 29-206 (452)
336 1cru_A Protein (soluble quinop 95.6 0.84 2.9E-05 48.2 20.3 110 442-552 25-162 (454)
337 3s25_A Hypothetical 7-bladed b 95.4 2.4 8.1E-05 42.0 24.9 208 326-565 25-256 (302)
338 2woz_A Kelch repeat and BTB do 95.4 0.58 2E-05 46.4 17.4 145 368-518 109-288 (318)
339 2zwa_A Leucine carboxyl methyl 95.0 0.86 3E-05 50.9 19.2 198 367-568 396-639 (695)
340 1tl2_A L10, protein (tachylect 94.9 1.9 6.4E-05 40.6 17.7 142 414-562 5-161 (236)
341 3das_A Putative oxidoreductase 94.8 1.2 4.2E-05 45.0 17.9 153 437-592 25-217 (347)
342 2zwa_A Leucine carboxyl methyl 94.5 1.4 4.7E-05 49.3 19.2 150 414-566 399-579 (695)
343 1cru_A Protein (soluble quinop 94.4 5.7 0.0002 41.7 28.1 107 357-463 26-163 (454)
344 1xi4_A Clathrin heavy chain; a 93.9 1.7 5.9E-05 51.7 18.3 195 321-522 73-294 (1630)
345 1tl2_A L10, protein (tachylect 93.8 2.7 9.1E-05 39.5 16.2 171 326-510 4-203 (236)
346 3b7f_A Glycosyl hydrolase, BNR 93.3 7.9 0.00027 39.4 25.0 265 313-584 54-391 (394)
347 3das_A Putative oxidoreductase 92.9 8.6 0.00029 38.7 28.0 238 353-595 27-326 (347)
348 3s25_A Hypothetical 7-bladed b 91.2 12 0.00041 36.7 20.0 124 423-566 88-218 (302)
349 3sbq_A Nitrous-oxide reductase 90.4 21 0.00073 38.2 21.6 230 371-604 72-405 (638)
350 3qhy_B Beta-lactamase inhibito 89.1 5 0.00017 39.1 13.4 217 359-603 25-242 (282)
351 3b7f_A Glycosyl hydrolase, BNR 87.6 26 0.00087 35.4 27.6 269 326-602 22-367 (394)
352 3uc1_A DNA gyrase subunit A; D 83.2 38 0.0013 33.5 21.9 272 326-598 3-321 (327)
353 3q6k_A 43.2 kDa salivary prote 83.1 43 0.0015 34.0 21.1 173 379-552 123-342 (381)
354 1zi0_A DNA gyrase subunit A; b 82.3 40 0.0014 33.1 25.6 236 326-564 3-277 (307)
355 3qhy_B Beta-lactamase inhibito 81.1 41 0.0014 32.4 16.5 238 315-585 25-263 (282)
356 2wg3_C Hedgehog-interacting pr 78.3 11 0.00036 39.7 10.8 111 443-553 13-158 (463)
357 3q6k_A 43.2 kDa salivary prote 76.7 68 0.0023 32.5 23.6 169 423-594 123-341 (381)
358 4hvt_A Ritya.17583.B, post-pro 74.3 1.1E+02 0.0038 33.8 23.9 239 316-563 131-429 (711)
359 3no0_A DNA gyrase subunit A; D 73.7 66 0.0022 30.9 19.9 198 314-517 24-246 (276)
360 1sqj_A OXG-RCBH, oligoxylogluc 73.6 1.2E+02 0.0041 33.9 24.2 147 313-464 14-190 (789)
361 3l6v_A GYRA, DNA gyrase subuni 70.9 92 0.0031 31.4 23.8 148 366-517 4-180 (370)
362 1suu_A DNA gyrase subunit A; t 70.1 85 0.0029 30.7 26.1 190 326-517 8-231 (312)
363 1suu_A DNA gyrase subunit A; t 70.0 86 0.0029 30.7 22.9 193 367-563 6-230 (312)
364 3no0_A DNA gyrase subunit A; D 68.6 85 0.0029 30.1 19.5 150 413-563 80-245 (276)
365 4gq2_M Nucleoporin NUP120; bet 66.2 1.9E+02 0.0064 33.2 22.2 36 488-523 237-272 (950)
366 4gq2_M Nucleoporin NUP120; bet 62.6 2.2E+02 0.0074 32.6 24.2 38 535-572 237-274 (950)
367 1wp5_A Topoisomerase IV; broke 61.2 1.3E+02 0.0044 29.6 24.5 234 326-564 5-277 (323)
368 3kci_A Probable E3 ubiquitin-p 59.3 1.5E+02 0.0051 29.7 25.7 238 316-564 55-345 (389)
369 4fhn_B Nucleoporin NUP120; pro 58.6 2.5E+02 0.0086 32.8 18.0 37 536-572 240-276 (1139)
370 3l6v_A GYRA, DNA gyrase subuni 57.4 1.6E+02 0.0055 29.5 27.5 193 322-517 4-265 (370)
371 2wg3_C Hedgehog-interacting pr 55.7 1.9E+02 0.0066 29.9 28.2 54 314-368 14-79 (463)
372 1zi0_A DNA gyrase subunit A; b 52.8 1.7E+02 0.0058 28.4 24.2 228 368-600 2-270 (307)
373 3uc1_A DNA gyrase subunit A; D 50.6 1.9E+02 0.0066 28.4 19.7 188 326-517 53-279 (327)
374 4fhn_B Nucleoporin NUP120; pro 47.4 59 0.002 38.2 10.1 39 359-397 239-277 (1139)
375 2cn3_A Xyloglucanase, beta-1,4 43.0 3.7E+02 0.013 29.5 28.3 60 315-376 24-91 (737)
376 3zwu_A Alkaline phosphatase PH 42.7 59 0.002 35.1 8.3 60 446-505 478-549 (592)
377 3zwu_A Alkaline phosphatase PH 42.6 74 0.0025 34.3 9.1 56 537-593 479-547 (592)
378 1sqj_A OXG-RCBH, oligoxylogluc 42.0 4E+02 0.014 29.6 26.1 146 357-507 14-190 (789)
379 4hvt_A Ritya.17583.B, post-pro 37.6 4.5E+02 0.015 28.9 24.0 229 361-596 132-416 (711)
380 4a9v_A PHOX; hydrolase, beta-p 37.4 1.1E+02 0.0036 32.9 9.1 62 444-505 476-549 (592)
381 3kci_A Probable E3 ubiquitin-p 36.9 3.3E+02 0.011 27.1 29.5 261 327-603 11-341 (389)
382 3f7f_A Nucleoporin NUP120; nuc 33.8 54 0.0018 36.2 6.2 37 359-397 223-259 (729)
383 3f7f_A Nucleoporin NUP120; nuc 31.9 1.4E+02 0.0047 33.0 9.1 31 543-573 229-259 (729)
384 4a9v_A PHOX; hydrolase, beta-p 31.4 1.7E+02 0.0057 31.5 9.4 59 536-594 478-549 (592)
385 2cn3_A Xyloglucanase, beta-1,4 29.9 5.8E+02 0.02 27.9 24.4 27 359-385 24-51 (737)
386 3a0c_A Mannose/sialic acid-bin 23.0 2.9E+02 0.0098 22.0 9.4 13 447-459 85-97 (110)
387 1zvt_A Topoisomerase IV subuni 20.4 5.3E+02 0.018 24.0 11.7 152 412-563 1-162 (256)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-42 Score=360.36 Aligned_cols=293 Identities=23% Similarity=0.351 Sum_probs=259.1
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007431 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
++.+..+++.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .++..+..+..|...|.+++|+|++++|++|+.|+.
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 345678899999999999999999 999999999999999999 678888899999999999999999999999999999
Q ss_pred EEEEECCCCc----EEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007431 381 IKYWDTETGQ----VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 381 I~vWD~~t~~----~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
|++|++.++. ....+..+ ....++.+.+. ..+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD----NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCC----CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 9999998763 33444333 33445556543 359999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
++|++|+.|+.|++||++++.....+. .|...|.+++|+|++++|++++.|+.|++||++....+.... .......
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~~~~ 272 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---HDNIICG 272 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CTTCCSC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc---cCCcccc
Confidence 999999999999999999998887764 588899999999999999999999999999998876543222 1212346
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|+||+.||.|+|||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999 778999999999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-42 Score=371.49 Aligned_cols=287 Identities=26% Similarity=0.463 Sum_probs=263.1
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
..++.+|..+|++++|+|+ +.+|++|+.||+|+|||+ .++++..++.+|...|++++|+|++++|++|+.|++|+|||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4578899999999999999 899999999999999999 68888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007431 386 TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 386 ~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
+.+++++..+..+ ..+.++.+.+++ .+|++|+.|+.|++||++++..+..+.+|...|.++.+++++.+|++|+.|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9999998888654 345677777754 689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCC--------------------CCEEEEEEcCCeEEEEEcCCceeeccc
Q 007431 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN--------------------TNWLAAQSLDNQILIYSTRERFQLNKK 524 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~--------------------g~~l~s~s~Dg~I~iwd~~~~~~~~~~ 524 (604)
++|++||+.+......+. .|...|.+++|+|+ +.+|++|+.|+.|++||++++..+
T Consensus 256 ~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~--- 331 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--- 331 (410)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE---
Confidence 999999999988877664 58899999999996 679999999999999999987655
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 525 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.+| ...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+| ++.+|+||+.||+|+|||
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 344556 56788999999999999999999999999999999999999999999999999 778999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-42 Score=353.51 Aligned_cols=291 Identities=19% Similarity=0.351 Sum_probs=259.0
Q ss_pred ceeEEecCCCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCCC-eeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 304 RLVHTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~---~g~~L~sgs~Dg~I~IWd~~~~~-~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.+...+.+|.+.|++|+|+|+ ++.+|+||+.|++|+||++.... .....+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 455677899999999999985 36799999999999999994322 34557899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007431 380 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
+|++||+.+++.+..+..+. ....+.++|++ .+|++|+.++.|++||+++++....+..|...|.+++|+|++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 99999999999998886543 45577888754 689999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007431 459 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
++++.||.|++||+++++.+..+. .|...|.+++|+|++++|++++.|+.|++||++..... ..+.+| ...|.+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h--~~~v~~ 253 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLSGH--ASWVLN 253 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEECCC--SSCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEcCC--CCceEE
Confidence 999999999999999998887764 58889999999999999999999999999999876544 345556 567899
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 539 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+| ++.+|++++.||.|+|||
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999 788999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.6e-41 Score=350.50 Aligned_cols=292 Identities=18% Similarity=0.280 Sum_probs=255.7
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
.+..+++.||.+.|+|++|+|+ +.+|+||+.||+|+|||. ..++....+..|...|.+++|+|+|.+|++++.|+.|+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 3678899999999999999999 899999999999999999 57778888889999999999999999999999999999
Q ss_pred EEECCCCc------EEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC--
Q 007431 383 YWDTETGQ------VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-- 453 (604)
Q Consensus 383 vWD~~t~~------~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp-- 453 (604)
+|++.... ....+. ......++.|.+++ ..|++++.|+.|++||+++++.+..+.+|...|.++.|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 99986541 222222 23344566676643 6799999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007431 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
++++|++|+.||.|++||++++.++..+. .|...|.+++|+|++.+|++++.|+.|++||++....+... ..+...
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~---~~~~~~ 284 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY---SKESII 284 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCcc
Confidence 46899999999999999999998877764 58899999999999999999999999999999876544322 222223
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|+|||
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4577899999999999999999999999999999999999999999999999 788999999999999997
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-41 Score=343.12 Aligned_cols=288 Identities=19% Similarity=0.326 Sum_probs=255.3
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
++.++|.+|.+.|++|+|+|+ +.+|++|+.||+|+|||+ .++..++.+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 567899999999999999999 999999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEE
Q 007431 384 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 460 (604)
Q Consensus 384 WD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp-~~~~l~s 460 (604)
||+.+++++..+..+ ..+.++.++|++ .+|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++..|++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 999999999888754 345677777754 68999999999999999987 55677899999999999999 6789999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007431 461 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
|+.|++|++||++.......+...+...+..+.++| ++.+|++++.|+.|++||++++..+ ..+.+| ...+..
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h--~~~v~~ 233 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH--MSNVSF 233 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCC--CCCEEE
Confidence 999999999999887776666666778899999987 6789999999999999999987655 345566 467889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC-EEEEEeCCCcEE
Q 007431 539 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIK 601 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~tgg~DG~I~ 601 (604)
++|+|++.+|++|+.||.|++||+.+++++..+..|...+.+++|+|.+.. +|++|+.||.+.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999999999999999999999999999996544 578877666543
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-40 Score=337.16 Aligned_cols=293 Identities=26% Similarity=0.535 Sum_probs=260.4
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
..+..++.+|...|++++|+|+ +++|++|+.||.|+||++ ..++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4678899999999999999999 999999999999999999 67888899999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007431 383 YWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 461 (604)
Q Consensus 383 vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg 461 (604)
+||+.+++++..+..+. ...++.+.+++ .+|++|+.|+.|++||+++++.+..+..|..+|.++.|+|++++|+++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99999999998887543 45567777643 689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007431 462 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
+.||.|++||+++...+..+...+...+..++|+|++++|++++.|+.|++||+.++..+.. +.+|..........+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---YTGHKNEKYCIFANF 244 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---ECSSCCSSSCCCEEE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EEecCCceEEEEEEE
Confidence 99999999999999888887766778899999999999999999999999999988765533 334432233223344
Q ss_pred -cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe--CCCcEEEeC
Q 007431 542 -SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 604 (604)
Q Consensus 542 -spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg--~DG~I~vWD 604 (604)
.+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+|++++ .||+|++|+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWK 309 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEec
Confidence 46789999999999999999999999999999999999999999 778999987 699999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.1e-42 Score=360.38 Aligned_cols=296 Identities=22% Similarity=0.403 Sum_probs=250.9
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 381 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I 381 (604)
...+.++|.||.+.|++++|+|+ +.+|+||+.||+|+|||+ .+++....+..|...|.+++|+|+|++|++|+.|+.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred eeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 34678899999999999999999 899999999999999999 6888899999999999999999999999999999999
Q ss_pred EEEECCCCc-------EEEEeeCCCc--ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-----cCcCCcee
Q 007431 382 KYWDTETGQ-------VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVN 447 (604)
Q Consensus 382 ~vWD~~t~~-------~i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-----~~h~~~V~ 447 (604)
++||+.+.. ....+. ++. ...+.+.+. ....|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPD--QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSS--SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred EEEECCCCccccCCccceeecc-CCCcceEEEEEecC--CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999997542 112222 222 333444443 3467999999999999999999988887 67899999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 448 TITFVD-SNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 448 ~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
++.|++ ++++|++|+.|++|++||++.. ..+..+ ..|...|.+++|+|++.+|++++.|+.|++||++++..+....
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 999987 7889999999999999999854 444444 4699999999999999999999999999999999876654332
Q ss_pred cccCc--ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE----ecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007431 526 RFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 526 ~~~~~--~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
..... .....+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.+|+||+.||+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKN 367 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCC
Confidence 21111 11234778999999999999999999999999999998888 67999999999999 7889999999999
Q ss_pred EEEeC
Q 007431 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|+|||
T Consensus 368 i~iW~ 372 (380)
T 3iz6_a 368 LKIWA 372 (380)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-39 Score=332.03 Aligned_cols=288 Identities=20% Similarity=0.378 Sum_probs=249.8
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC----CeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.+..+|.||.+.|++|+|+|+++++|++|+.|++|++|++... +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 5678899999999999999985799999999999999998422 346788999999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC----
Q 007431 380 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---- 454 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~---- 454 (604)
+|+|||+.+++++..+..+. .+.++.+.+++ .+|++|+.|+.|++||++ +..+..+.+|...|.++.++|.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999998887543 45566676643 689999999999999996 5577888899999999999985
Q ss_pred --CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007431 455 --NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 455 --~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
+..|++++.|+.|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.+...+... ..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~--- 236 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SA--- 236 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---
Confidence 4489999999999999999888776664 68999999999999999999999999999999887655433 22
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--------CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 533 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
...+.+++|+|++.+|++++.+ .+++|++..+..+..+.. |...+.+++|+| ++.+|++|+.||.|+|||
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 2468899999999999988765 599999999888877753 456799999999 788999999999999997
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=334.65 Aligned_cols=295 Identities=18% Similarity=0.303 Sum_probs=241.6
Q ss_pred ceeEEecCCCC-CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee--E-EecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 304 RLVHTWSGHTK-GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--R-TYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~-~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~--~-~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.++.++.+|.. .|.+|+|+|+ +.+|++|+.|++|+||++. .+... . ...+|...|++++|+|++++|++|+.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 57889999988 9999999999 9999999999999999994 44322 2 2368999999999999999999999999
Q ss_pred cEEEEECCCCc--EEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeC
Q 007431 380 NIKYWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 380 ~I~vWD~~t~~--~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp 453 (604)
.|+|||+.++. ++..+..+ ..+.++.|+|++ .+|++|+.|+.|++||++++ ..+..+..|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999998774 45555443 345677777754 78999999999999999876 34667889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec----------
Q 007431 454 SNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN---------- 522 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~---------- 522 (604)
++.+|++++.|+.|++||++..... ......|...|.+++|+|++++|++++.|+.|++|+........
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 9999999999999999999877533 22335689999999999999999999999999999974321110
Q ss_pred --ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--------e-EEEEecCCCcEEEEEEecCCCCEE
Q 007431 523 --KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--------V-FRTLKCHEGVCIGCEWHPLEQSKV 591 (604)
Q Consensus 523 --~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~--------~-~~~l~~h~~~V~~v~~sp~~~~~l 591 (604)
....+.+. ....|.+++|+|++.+|++++.|+.|++|+..... . .....+|...|.+++|+|++..+|
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 01112221 24578899999999999999999999999987542 1 122357999999999999655799
Q ss_pred EEEeCCCcEEEeC
Q 007431 592 ATCGWDGLIKYWD 604 (604)
Q Consensus 592 ~tgg~DG~I~vWD 604 (604)
+||+.||+|++||
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 9999999999996
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=336.86 Aligned_cols=282 Identities=18% Similarity=0.300 Sum_probs=231.8
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC----------CCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV----------NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~----------~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
.|...|.+++|+|+ |.+|++++ |+++++||.. ...........|...|.+++|+|++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 57778999999999 89999888 7788888731 0111112223466789999999985 7889999999
Q ss_pred EEEEECCCCcEEEEee-----CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007431 381 IKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
|+|||+.+++.+..+. ....+.++.|++++ .+|++|+.|+.|++||+++++++..+.+|.+.|+++.|++++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 9999999987654432 23445677777654 689999999999999999999999999999999999999987
Q ss_pred C-EEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007431 456 R-RFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 456 ~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
. +|++++.|++|++||+++++....+.. .+...+.+++|+|+ +.+|++|+.|+.|++||++++..+ ..+.+|
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~~~~~h-- 256 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---LSSAVH-- 256 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---EEEECC--
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---EEEcCC--
Confidence 4 789999999999999999888777643 34567899999995 578899999999999999887654 445566
Q ss_pred ccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 533 AGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 533 ~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
...|.+++|+|+| ++|++|+.||.|+|||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 5678999999998 58999999999999999998865 57899999999999997777889999999999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.1e-39 Score=358.72 Aligned_cols=310 Identities=22% Similarity=0.365 Sum_probs=252.4
Q ss_pred eccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE
Q 007431 273 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 352 (604)
Q Consensus 273 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~ 352 (604)
..+...|...|.|-.. +.++++++.+|...|++++|+|+ +.+|++|+.|++|+|||+ .+++++..
T Consensus 163 l~s~s~D~~v~lwd~~-------------~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~-~~g~~~~~ 227 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGP-------------PFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNG-VDGTKTGV 227 (611)
T ss_dssp EEEEETTSCEEEEETT-------------TBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEE
T ss_pred EEEEeCCCeEEEEECC-------------CCeEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEEC-CCCcEeee
Confidence 5666778888888532 34678899999999999999999 999999999999999999 67778877
Q ss_pred ec-------CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC----------------------------
Q 007431 353 YM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---------------------------- 397 (604)
Q Consensus 353 ~~-------~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~---------------------------- 397 (604)
+. +|...|.+++|+|+|++|++++.|++|+|||+.+++++..+..
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 74 7999999999999999999999999999999999887765532
Q ss_pred --------------CC--cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-c--------------------
Q 007431 398 --------------GK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D-------------------- 440 (604)
Q Consensus 398 --------------~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~-------------------- 440 (604)
++ .+..++++++ +.+|++++.|+.|++||+.+++....+ .
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spd---g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~ 384 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSAD---GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 384 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEE
Confidence 12 2344555553 378999999999999999876443221 0
Q ss_pred -------------------------------------------------------------CcCCceeEEEEeCCCCEEE
Q 007431 441 -------------------------------------------------------------QHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 441 -------------------------------------------------------------~h~~~V~~i~~sp~~~~l~ 459 (604)
.|...+.+++|+|++++|+
T Consensus 385 s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~la 464 (611)
T 1nr0_A 385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA 464 (611)
T ss_dssp ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEE
T ss_pred EcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEE
Confidence 1234577899999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+|+.|++|++||+............|...|.+++|+|++++|++++.|+.|++|++.+...+.....+.+| ...|.++
T Consensus 465 sgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H--~~~V~~v 542 (611)
T 1nr0_A 465 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--TAKVACV 542 (611)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC--SSCEEEE
T ss_pred EeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec--ccceeEE
Confidence 99999999999998765422222458889999999999999999999999999999863222221123335 5779999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCe-eE-EEEecC-CCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 540 NFSPDGRFVMSGDGEGKCWFWDWKSCK-VF-RTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~-~~-~~l~~h-~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+|+|+|++|++|+.|+.|++||+.++. .+ ..+.+| ...|.+++|+| ++. |++++.||+|++||
T Consensus 543 ~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 543 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEe
Confidence 999999999999999999999998865 33 566789 88999999999 555 99999999999996
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.3e-39 Score=359.07 Aligned_cols=292 Identities=18% Similarity=0.330 Sum_probs=244.7
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
..+.++.+|...|++++|+|++..+|++|+.|++|++||. ..++++.++.+|...|++++|+|+|++|++++.|++|+|
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence 3456788999999999999994457999999999999998 678889999999999999999999999999999999999
Q ss_pred EECCCCcEEEEee--------CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE------------------
Q 007431 384 WDTETGQVIRTFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ------------------ 437 (604)
Q Consensus 384 WD~~t~~~i~~~~--------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~------------------ 437 (604)
||+.+++++..+. ....+..+.|+|++ .+|++++.|+.|++||+++++.+.
T Consensus 217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EECCCCcEeeeeccccccccccCCCEEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 9999999988884 23345667777644 689999999999999998876543
Q ss_pred -------------------------EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---------
Q 007431 438 -------------------------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--------- 483 (604)
Q Consensus 438 -------------------------~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~--------- 483 (604)
.+.+|...|++++|+|++++|++++.|++|++||+.++.....+..
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence 3457899999999999999999999999999999876544322100
Q ss_pred ------------------------------------------------------------------------CCCCcccE
Q 007431 484 ------------------------------------------------------------------------PHMHSMPS 491 (604)
Q Consensus 484 ------------------------------------------------------------------------~~~~~v~~ 491 (604)
.+...+.+
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 453 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 453 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence 01234678
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEE
Q 007431 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRT 570 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~~~~~~ 570 (604)
++|+|++++|++++.|+.|++|++.+..... ... .+| ...|.+++|+|+|++|++++.|+.|++|++.+ ++++..
T Consensus 454 va~spdg~~lasgs~D~~v~lwd~~~~~~~~-~~~-~~h--~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~ 529 (611)
T 1nr0_A 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSE-VKT-IVH--PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 529 (611)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEE-EEE-EEC--SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred EEEeCCCCEEEEeCCCCeEEEEEccCCceee-eec-cCC--CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee
Confidence 9999999999999999999999997653221 122 334 56799999999999999999999999999987 666554
Q ss_pred --EecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 571 --LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 571 --l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+|...|.+++|+| ++.+|+||+.|++|+|||
T Consensus 530 ~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 530 NSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred eeeeecccceeEEEECC-CCCEEEEEECCCcEEEEE
Confidence 345999999999999 788999999999999996
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-39 Score=339.17 Aligned_cols=283 Identities=19% Similarity=0.328 Sum_probs=231.1
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEEC------CCcEEEEecCCCCe----eeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 310 SGHTKGVSAIRFFPKYGHLILSAGM------DTKVKIWDVVNSGK----CMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~------Dg~I~IWd~~~~~~----~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.+|...|++|+|+|+ |.+|++|+. |+.|++|+.. .+. ......+|...|.+++|+|++. +++++.||
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECC-CCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 479999999999999 999999998 7789999873 332 2334457899999999999875 66788899
Q ss_pred cEEEEECCCCcEEEEe-----eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007431 380 NIKYWDTETGQVIRTF-----STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~-----~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
+|+|||+.+++.+... .....+.++.|++++ .+|++|+.|+.|++||+++++.+..+.+|...|++++|+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 9999999988765332 123445677777654 68999999999999999999999999999999999999998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCeEEEEee-cCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007431 455 NR-RFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 531 (604)
Q Consensus 455 ~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 531 (604)
+. +|++++.||.|++||++++.....+. ..+...+.+++|+|+ +.+|++++.|+.|++||+++...+ ..+.+|
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~---~~~~~~- 268 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA---QTSAVH- 268 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC---EEECCC-
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe---EEEecc-
Confidence 75 78999999999999999887665543 245667999999997 568999999999999999876544 344555
Q ss_pred cccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 532 VAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 532 ~~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
...|.+++|+|++ ++|++|+.||.|+|||+.+++++..+ +|.+.|++++|+|.++.+|+|||.||+|++||
T Consensus 269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 4678899999987 68999999999999999999888765 79999999999997788999999999999996
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-37 Score=319.75 Aligned_cols=289 Identities=23% Similarity=0.394 Sum_probs=244.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC----CeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.+..+|+||++.|++|+|+|+++++|+||+.||+|+|||+... ..+.+.+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4667899999999999999987899999999999999998432 246778899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCCCcce-EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCC--
Q 007431 380 NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSN-- 455 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~~h~~~V~~i~~sp~~-- 455 (604)
.|++|+................. ...+.+. ..+|++|+.|+.+++||+..... ......|...+.++.|++++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999999988877776554433 4444443 36799999999999999987644 34456789999999998764
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
.++++++.|+.|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+++...+... .. ...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~---~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL---DG---GDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---SSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee---cC---Cce
Confidence 578899999999999999998877764 58899999999999999999999999999999987665432 22 256
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe---------cCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~---------~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+..+.|+|++.++ +++.|+.|++||+.++..+..+. +|...|++++|+| ++.+|+||+.||.|+|||
T Consensus 259 v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 8889999988665 45569999999999988776654 5788999999999 788999999999999997
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-38 Score=332.53 Aligned_cols=290 Identities=20% Similarity=0.376 Sum_probs=244.9
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC------------------ceeeEEEc
Q 007431 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------------------AVRDISFC 366 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~------------------~V~~l~fs 366 (604)
+.+.+ +|...|+|++|+|+ +++|++|+ ++.++||++ .++..+..+..|.. .|++++|+
T Consensus 57 ~~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred eEEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 33444 69999999999999 89999976 789999999 67777777766542 49999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc
Q 007431 367 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 445 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~ 445 (604)
|+|++|++|+.|+.|+|||+.+++.+..+..+. .+.++.|.+++ .+|++|+.|+.|++||+++++....+. +...
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 999999999999999999999999988886543 45677777754 689999999999999999998887775 6678
Q ss_pred eeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeEEEEee------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007431 446 VNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 446 V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~------~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
+.+++|+| ++++|++++.|+.|++||++++..+..+. ..|...|.+++|+|++++|++++.|+.|++||++..
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 89999999999999999999988776653 357889999999999999999999999999998764
Q ss_pred eeec---------ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC---
Q 007431 519 FQLN---------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--- 586 (604)
Q Consensus 519 ~~~~---------~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~--- 586 (604)
.... ....+.+| ...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3211 12234455 467889999999999999999999999999999999999999999999999873
Q ss_pred --CCCEEEEEeCCCcEEEeC
Q 007431 587 --EQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 587 --~~~~l~tgg~DG~I~vWD 604 (604)
++.+|+||+.||+|+|||
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CTTCEEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEECCCCcEEECc
Confidence 467899999999999996
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-37 Score=324.46 Aligned_cols=288 Identities=20% Similarity=0.358 Sum_probs=238.0
Q ss_pred ceeEEecCCCCCeEEEEE-----cCCCCCEEEEEECCCcEEEEecCCC------CeeeEEecCCCCceeeEEEccCCCEE
Q 007431 304 RLVHTWSGHTKGVSAIRF-----FPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKF 372 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~f-----sp~~g~~L~sgs~Dg~I~IWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~L 372 (604)
.+..+|.||.+.|++|+| ++.++.+|++|+.|++|+|||+... +.+...+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 567889999999999999 7733899999999999999999432 35677889999999999999999999
Q ss_pred EEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---CcCCceeE
Q 007431 373 LTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVNT 448 (604)
Q Consensus 373 ~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~---~h~~~V~~ 448 (604)
++|+.|++|+|||+.+++.+..+..+ ..+.++.|+|++ .+|++|+.|+.|++||+... ...... .|...|.+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeee
Confidence 99999999999999999999888654 455677787754 68999999999999999843 333333 68899999
Q ss_pred EEEeCCC----------CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007431 449 ITFVDSN----------RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 449 i~~sp~~----------~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
+.|+|++ .+|++++.|+.|++||.. ......+ ..|...|.+++|+|++++|++++.|+.|++||+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999986 789999999999999943 4444444 468899999999999999999999999999998543
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEe-----------cCCCcEEEEEEec
Q 007431 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK-----------CHEGVCIGCEWHP 585 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~--~l~-----------~h~~~V~~v~~sp 585 (604)
.... ..+. + ...+.+++|+|++.+|++| .|+.|++|++.+++... .+. +|...|.+++|+|
T Consensus 246 ~~~~--~~~~-~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 246 TYPQ--REFD-A--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCS--EEEE-C--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred cccc--eeec-C--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 2211 1111 1 2458899999999988765 57789999998876543 443 6788899999999
Q ss_pred CCCCEEEEEeCCCcEEEeC
Q 007431 586 LEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 586 ~~~~~l~tgg~DG~I~vWD 604 (604)
++.+|++|+.||.|++||
T Consensus 320 -~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 320 -LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp -SSCCEEEEETTSEEEEEE
T ss_pred -CCCeEEEecCCceEEEEE
Confidence 778999999999999996
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=321.38 Aligned_cols=288 Identities=18% Similarity=0.301 Sum_probs=257.2
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
.....+.+|...|++++|+|+ +.+|++|+.||.|+|||+ .+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 345678999999999999999 999999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCc-----------eEEEEcCcCC--c
Q 007431 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE-----------ITQEYDQHLG--A 445 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~-----------~~~~~~~h~~--~ 445 (604)
||+.+++++..+.....+..+.+.+++ .++++++.+ +.|++||+.... .+..+..|.+ .
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 999999999999877778888888754 688999888 999999997653 3344556666 9
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007431 446 VNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 524 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~ 524 (604)
+.+++|+|++++|++++.||.|++||++. ...+..+. .|...|.+++|+|++.+|++++.|+.|++||+.+.......
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 99999999999999999999999999998 55555554 58889999999999999999999999999999887655433
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCC--------------cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007431 525 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--------------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG--------------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
. ....+..++|+|+++++++++.++ .|++||+.+++.+..+.+|...|.+++|+| ++.+
T Consensus 257 ~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 329 (369)
T 3zwl_B 257 E------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTS 329 (369)
T ss_dssp E------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSE
T ss_pred c------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCE
Confidence 3 245688899999999999999988 899999999999999999999999999999 7889
Q ss_pred EEEEeCCCcEEEeC
Q 007431 591 VATCGWDGLIKYWD 604 (604)
Q Consensus 591 l~tgg~DG~I~vWD 604 (604)
|++++.||.|+|||
T Consensus 330 l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 330 YASGGEDGFIRLHH 343 (369)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEcCCCeEEEEE
Confidence 99999999999996
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=319.02 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=233.4
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CeeeEEe-cC-CCCceeeEEEccCCCEEEEEECCC
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTY-MG-HSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~-~~~~~~~-~~-h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.++++++.+|.+.|.+++|+|+ +|++|+.|++|+||++... ...+..+ .+ |...|++++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4678899999999999999976 9999999999999999432 2455666 44 999999999999999999999999
Q ss_pred cEEEEECCC-------CcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC----CceEEEEcCcCCcee
Q 007431 380 NIKYWDTET-------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 447 (604)
Q Consensus 380 ~I~vWD~~t-------~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s----~~~~~~~~~h~~~V~ 447 (604)
+|+|||+.. .+++..+..+ ..+.++.|+|++ .+|++|+.|+.|++||++. .+.+..+.+|...|.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999853 3445555433 345677777753 6899999999999999953 256778899999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC--eEEEEeecCCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEcCCcee---
Q 007431 448 TITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQ--- 520 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~~v~~l~~sp~--g~~l~s~s~Dg~I~iwd~~~~~~--- 520 (604)
++.|+|++.+|++++.|++|++||+... .++..+ ..|...|.+++|+|+ +.+|++++.|+.|++|++.....
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 9999999999999999999999998766 344444 468999999999998 77999999999999999865311
Q ss_pred --ecccccccC-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--eEEEE-ecCCC-cEEEEEEecC-CCCEEE
Q 007431 521 --LNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--VFRTL-KCHEG-VCIGCEWHPL-EQSKVA 592 (604)
Q Consensus 521 --~~~~~~~~~-~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~--~~~~l-~~h~~-~V~~v~~sp~-~~~~l~ 592 (604)
......+.+ | ...|.+++|++++ +|++++.||.|++|+..+++ .+... .+|.. .|.+++|+|. ++.+|+
T Consensus 237 ~~~~~~~~~~~~h--~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 237 QEWVCEAILPDVH--KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEEECCSCC--SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred ceeEEeeeccccc--ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 011122222 3 5678999999765 88999999999999998874 34333 57877 8999999995 467899
Q ss_pred EEeCCCcEEEeC
Q 007431 593 TCGWDGLIKYWD 604 (604)
Q Consensus 593 tgg~DG~I~vWD 604 (604)
||+.||+|+|||
T Consensus 314 s~s~Dg~v~~W~ 325 (330)
T 2hes_X 314 TGGDDGIVNFWS 325 (330)
T ss_dssp EEETTSEEEEEE
T ss_pred EecCCCcEEEEE
Confidence 999999999996
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-36 Score=338.00 Aligned_cols=301 Identities=25% Similarity=0.507 Sum_probs=258.2
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE
Q 007431 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 351 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~ 351 (604)
+......|...|.|-. ..+++..+.+|...|.+++|+|+ +.+|++++.|+.|++|++ .+..+.
T Consensus 276 ~l~~~~~d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~--~~~~~~ 338 (577)
T 2ymu_A 276 TIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR--NGQHLQ 338 (577)
T ss_dssp EEEEEETTSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET--TSCEEE
T ss_pred EEEEEeCCCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC--CCCeeE
Confidence 3344445566666642 23567889999999999999999 999999999999999998 456677
Q ss_pred EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007431 352 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 352 ~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
.+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..+ ..+..+.+.+++ .+|++++.|+.|++||.
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG---QTIASASDDKTVKLWNR 414 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS---SCEEEEETTSEEEEECT
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC---CEEEEEeCCCEEEEEeC
Confidence 88999999999999999999999999999999995 56777766543 445677777654 57999999999999995
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 431 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 431 ~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
+++.+..+..|...|++++|+|++++|++++.|+.|++||+. ...+..+. .|...|.+++|+|++++|++++.|+.|
T Consensus 415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 577888999999999999999999999999999999999975 44455443 688999999999999999999999999
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007431 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
++|+... ..+ ..+.+| ...|.+++|+|+|++|++++.||.|++||. +++++..+.+|.+.|++++|+| ++.+
T Consensus 492 ~iw~~~~-~~~---~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~-dg~~ 563 (577)
T 2ymu_A 492 KLWNRNG-QLL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQT 563 (577)
T ss_dssp EEEETTS-CEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSC
T ss_pred EEEcCCC-CEE---EEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcC-CCCE
Confidence 9999643 332 345666 567899999999999999999999999995 7889999999999999999999 7789
Q ss_pred EEEEeCCCcEEEeC
Q 007431 591 VATCGWDGLIKYWD 604 (604)
Q Consensus 591 l~tgg~DG~I~vWD 604 (604)
|+|+|.||+|++||
T Consensus 564 l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 564 IASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEeCCCEEEEeC
Confidence 99999999999998
No 20
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-38 Score=334.75 Aligned_cols=299 Identities=14% Similarity=0.233 Sum_probs=246.0
Q ss_pred CcceeEEe-cCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCC---C--CeeeEEecCCCCceeeEEEccCCCEEEE
Q 007431 302 PKRLVHTW-SGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVN---S--GKCMRTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 302 p~~~i~tl-~gH~~~V~~l~fsp-~~g~~L~sgs~Dg~I~IWd~~~---~--~~~~~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
..+++.++ .+|.+.|++|+|+| + +.+|++|+.||+|+|||+.. . ..+...+ +|...|++++|+|++++|++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 34678888 99999999999999 7 89999999999999999842 1 1233444 59999999999999999999
Q ss_pred EECCCcEEEEECC---CCcEEEEee-------------CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE
Q 007431 375 ASYDKNIKYWDTE---TGQVIRTFS-------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 438 (604)
Q Consensus 375 ~s~Dg~I~vWD~~---t~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~ 438 (604)
|+.||.|++||+. +++.+..+. ......++.+... .++.+|++|+.|+.|++||+++++.+..
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 9999999999995 565554433 1222233332232 2347999999999999999999999999
Q ss_pred EcC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC----CCCEEEEEEcCCeEEE
Q 007431 439 YDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----NTNWLAAQSLDNQILI 512 (604)
Q Consensus 439 ~~~--h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~s~s~Dg~I~i 512 (604)
+.. |.+.|++++|+|++++|++|+.||.|++||++.+..+..+...+...|.+++|+| ++.+|++++.|+.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 8999999999999999999999999999999999998887666788999996665 5779999999999999
Q ss_pred EEcCCceeeccccc---------------------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007431 513 YSTRERFQLNKKKR---------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 513 wd~~~~~~~~~~~~---------------------~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
||+.++..+..... +.+......|.+++|+ ++++|++|+.||.|++||+.+++++..+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99987765433321 1221135668889999 7899999999999999999999887777
Q ss_pred ec-------------------------------------CCCcEEEEEEecC-CCCEEEEEeCCCcEEEeC
Q 007431 572 KC-------------------------------------HEGVCIGCEWHPL-EQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 572 ~~-------------------------------------h~~~V~~v~~sp~-~~~~l~tgg~DG~I~vWD 604 (604)
.+ |...|.+++|++. +..+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 65 8889999999994 367999999999999995
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.9e-37 Score=323.74 Aligned_cols=293 Identities=13% Similarity=0.184 Sum_probs=251.4
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe------eeEEecCCCCceeeEEEccC----C---C
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCND----G---T 370 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~------~~~~~~~h~~~V~~l~fspd----g---~ 370 (604)
.+.+++.+|.+.|++|+|+| .+|++|+.||.|+||++ ..+. ++..+.+|...|++++|+|+ + +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDN-KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEES-BCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEEC-CCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 46678899999999999987 69999999999999999 4554 68888899999999999999 9 9
Q ss_pred EEEEEECCCcEEEEECCCCcE-----EEEeeCC------CcceEEEEccCC-CCCcE-EEEEEcCCeEEEEeCCC-----
Q 007431 371 KFLTASYDKNIKYWDTETGQV-----IRTFSTG------KIPYVVKLNPDD-DKQNI-LLAGMSDKKIVQWDMNT----- 432 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~-----i~~~~~~------~~~~~~~~~~~~-~~~~~-lvsg~~dg~I~iwD~~s----- 432 (604)
+|++++.||.|++||+.+++. +..+... ..+.++.+.+.. ..+.+ |++++.||.|++||+++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 999999999999999998886 7777655 566778887210 12367 99999999999999998
Q ss_pred -CceEE-----EE-------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC--C---CCcccEEEE
Q 007431 433 -KEITQ-----EY-------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--H---MHSMPSISL 494 (604)
Q Consensus 433 -~~~~~-----~~-------~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~--~---~~~v~~l~~ 494 (604)
++.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++...+..+... | ...|.+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 66555 66 4589999999999999 9999999999999999999888777531 6 789999999
Q ss_pred cCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCc-----------ccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007431 495 HPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGH-----------IVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 495 sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
+|++++|++++.| +.|++||+.+...+.. +.+. .....+.+++|+|++++|++++.||.|++|
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGS---LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEE---ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccce---eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999 9999999988765533 3330 025678999999999999999999999999
Q ss_pred eCCCCeeEEEEe------cC---------------CCcEEEEEEecCCC---------CEEEEEeCCCcEEEeC
Q 007431 561 DWKSCKVFRTLK------CH---------------EGVCIGCEWHPLEQ---------SKVATCGWDGLIKYWD 604 (604)
Q Consensus 561 d~~t~~~~~~l~------~h---------------~~~V~~v~~sp~~~---------~~l~tgg~DG~I~vWD 604 (604)
|+.+++++..+. .| ...|.+++|+|++. .+|++++.||.|++||
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999 88 89999999999431 7999999999999996
No 22
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=322.37 Aligned_cols=299 Identities=16% Similarity=0.206 Sum_probs=250.0
Q ss_pred cceeEEecCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCeeeEEe-------------cCCCCceeeEEEcc-
Q 007431 303 KRLVHTWSGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------------MGHSKAVRDISFCN- 367 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp-~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~-------------~~h~~~V~~l~fsp- 367 (604)
.+....+.+|.+.|++++|+| + +.+|++|+.||.|+||++. .+.....+ .+|...|.+++|+|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred CcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 356678889999999999999 7 9999999999999999994 44333322 25999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCcee
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 447 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~ 447 (604)
++.+|++++.||.|++||+.+++.+..+........+.+.+...+..++++|+.++.|++||+++++.+..+..|...|.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 78899999999999999999999999998888888999999877778999999999999999999999999999999999
Q ss_pred EEEEeCCCC-EEEEEeCCCcEEEEECCCCe-EEEEee--------------cCCCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007431 448 TITFVDSNR-RFVTSSDDKSLRVWEFGIPV-VIKYIS--------------EPHMHSMPSISLHPNTNWLAAQSLDNQIL 511 (604)
Q Consensus 448 ~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~-~~~~~~--------------~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~ 511 (604)
+++|+|++. +|++++.||.|++||++... .+..+. ..|...|.+++|+|++++|++++.|+.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 999999998 58999999999999998765 222221 35778899999999999999999999999
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEE
Q 007431 512 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 591 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 591 (604)
+||+.++.................+........+..+++++.++.|++||+.+++++..+.+|.+.|.+++|+| ++.+|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 349 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQEL 349 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEE
Confidence 99998865443222111111111111122233455666777899999999999999999999999999999999 77899
Q ss_pred EEEeCCCcEEEeC
Q 007431 592 ATCGWDGLIKYWD 604 (604)
Q Consensus 592 ~tgg~DG~I~vWD 604 (604)
++|+.||.|++||
T Consensus 350 ~s~~~dg~i~iw~ 362 (408)
T 4a11_B 350 YSGSRDCNILAWV 362 (408)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEECCCCeEEEEe
Confidence 9999999999996
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-36 Score=344.07 Aligned_cols=289 Identities=23% Similarity=0.390 Sum_probs=246.3
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC----CeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
++...+++|++.|++|+|+|+++++|+||+.|++|+||++... +...+.+.+|...|++++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556789999999999999987799999999999999998432 345678899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCCceeEEEEeCCC
Q 007431 380 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSN 455 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~~V~~i~~sp~~ 455 (604)
+|+|||+.++.++..+..+ ..+.++++++++ .+|++|+.|+.|++||+......... .+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999998888654 345677777754 57999999999999998765433332 4688899999999986
Q ss_pred --CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007431 456 --RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 456 --~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
..|++++.|++|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.++..+... .. .
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~---~ 602 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EA---N 602 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---BC---S
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---cC---C
Confidence 589999999999999999988777664 68999999999999999999999999999999987765432 22 3
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC-------------------cEEEEEEecCCCCEEEEE
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-------------------VCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~-------------------~V~~v~~sp~~~~~l~tg 594 (604)
..+.+++|+|++.+|++++ ++.|+|||+.+++++..+..+.. .|++++|+| ++.+|++|
T Consensus 603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sg 680 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSG 680 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEE
T ss_pred CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEE
Confidence 5688999999999888776 55699999999999888764321 378999999 78899999
Q ss_pred eCCCcEEEeC
Q 007431 595 GWDGLIKYWD 604 (604)
Q Consensus 595 g~DG~I~vWD 604 (604)
+.||+|+|||
T Consensus 681 s~Dg~i~iW~ 690 (694)
T 3dm0_A 681 YTDGVIRVWG 690 (694)
T ss_dssp ETTSEEEEEE
T ss_pred cCCCeEEEEe
Confidence 9999999996
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-36 Score=320.00 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=241.1
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec--CCCCceeeEEEcc-CCCEEEEEECC
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCN-DGTKFLTASYD 378 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~--~h~~~V~~l~fsp-dg~~L~s~s~D 378 (604)
+.++.+++.+|...|++++|+|++..+|++|+.||.|+|||+ ..+.....+. +|...|.+++|+| ++++|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY-DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEET-TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeC-CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 446788999999999999999993399999999999999999 5555555554 6999999999999 78999999999
Q ss_pred CcEEEEECCCCcEEEEeeCC----CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007431 379 KNIKYWDTETGQVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~----~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
+.|++||+.+ ..+..+... ..+.++.+++++ .+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 9999999996 455555433 336677777754 68999999999999999 57788899999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCC----CeEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007431 455 NR-RFVTSSDDKSLRVWEFGI----PVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 455 ~~-~l~sgs~Dg~I~iwdl~~----~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
++ +|++++.|+.|++||++. ...+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++...........
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99 999999999999999987 5566655 4889999999999 99999999999999999998765433222111
Q ss_pred ----Ccc--------cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--CCCcEEEEEEecCCCCEEEEE
Q 007431 529 ----GHI--------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 529 ----~~~--------~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~tg 594 (604)
.+. ....+..++|+|+|++ +|+.||.|++||+.+++++..+.+ |.+.+..++|+| ++.+|++|
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 010 0123445677777777 778999999999999999999987 456777789999 77899999
Q ss_pred eCCCcEEEeC
Q 007431 595 GWDGLIKYWD 604 (604)
Q Consensus 595 g~DG~I~vWD 604 (604)
+ ||.|+|||
T Consensus 371 s-d~~i~iw~ 379 (383)
T 3ei3_B 371 M-GFNILIWN 379 (383)
T ss_dssp E-TTEEEEEE
T ss_pred c-CCcEEEEe
Confidence 7 99999997
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-35 Score=303.77 Aligned_cols=283 Identities=14% Similarity=0.304 Sum_probs=244.0
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEec--CCCCceeeEEEccCCCEEEEEECCCcEE
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
....+|...|++++|+|+ +.+|++++ ||.|++|++.... ..+..+. +|...|.+++|+|++++|++++.|+.|+
T Consensus 45 ~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred ceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 344589999999999999 89999999 9999999994322 2334443 7999999999999999999999999999
Q ss_pred EEECCCCc--EEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007431 383 YWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 383 vWD~~t~~--~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
+||+.+++ ....+..+ .....+.+.+++ .++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|+
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence 99999887 44444433 335567777643 6899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+++.||.|++||++....+..+. +...+.+++|+|++++|++++.++.|++|++.+.... .+..| ...+.++
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~v~~~ 271 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLH--ESCVLSL 271 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCC--SSCEEEE
T ss_pred EEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCC--ccceeEE
Confidence 99999999999999998887764 6778999999999999999999999999999876532 23344 5678899
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+| ++.+|++++.||.|++||
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 99999999999999999999999999888554 4888999999999 778999999999999996
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=301.39 Aligned_cols=283 Identities=16% Similarity=0.240 Sum_probs=244.8
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007431 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
.+.++++++.+|.+.|++++| |+ +.+|++|+.||.|+|||+ ..+.....+..|...|.+++|+|++++|++++.||.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 355788999999999999999 87 899999999999999999 678888889999999999999999999999999999
Q ss_pred EEEEECCCC---cEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CC
Q 007431 381 IKYWDTETG---QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SN 455 (604)
Q Consensus 381 I~vWD~~t~---~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp-~~ 455 (604)
|++|++... +.+..+..+ ....++.+ + +.++++++.|+.|++|| .++.+..+..|...|.++.|.| ++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--c---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 999998764 445555332 23334444 2 36899999999999999 7778888999999999999998 89
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
++|++++.||.|++|| .......+...+...+.+++|+|++. |++++.|+.|++||++++..+. .+.+| ...
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~--~~~ 227 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGH--ESF 227 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECC--SSC
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcC--Cce
Confidence 9999999999999999 45556666555889999999999998 9999999999999998876553 34445 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence 8899999999 588999999999999999999999999999999999999 554 77899999999996
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-35 Score=329.47 Aligned_cols=303 Identities=24% Similarity=0.495 Sum_probs=259.1
Q ss_pred eeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee
Q 007431 271 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM 350 (604)
Q Consensus 271 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~ 350 (604)
.+......|...|.|-. ..+++..+.+|...|++++|+|+ +.+|++++.|+.|++|+. .++.+
T Consensus 234 ~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~--~~~~~ 296 (577)
T 2ymu_A 234 QTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNR--NGQLL 296 (577)
T ss_dssp SCEEEEETTSCEEEECT--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET--TSCEE
T ss_pred CEEEEEeCCCEEEEEeC--------------CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeC--CCcEE
Confidence 33444455666777732 23567889999999999999999 999999999999999997 57788
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007431 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
..+.+|...|.+++|+|++++|++++.|+.|++||+..............+.++.+.+++ .++++|+.|+.|++||.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEET
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCCCEEEEEcC
Confidence 899999999999999999999999999999999998765544333334455677777754 68999999999999995
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 431 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 431 ~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
+++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|++++.|+.|
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 577888899999999999999999999999999999999964 45555554 588999999999999999999999999
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007431 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
++|+.... .+ ..+.+| ...+.+++|+|++++|++++.|+.|++|| .+++++..+.+|...|++++|+| ++.+
T Consensus 451 ~~w~~~~~-~~---~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~-dg~~ 522 (577)
T 2ymu_A 451 KLWNRNGQ-LL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQT 522 (577)
T ss_dssp EEEETTSC-EE---EEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECT-TSSC
T ss_pred EEEECCCC-EE---EEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcC-CCCE
Confidence 99997543 22 344555 46788999999999999999999999999 57889999999999999999999 7789
Q ss_pred EEEEeCCCcEEEeC
Q 007431 591 VATCGWDGLIKYWD 604 (604)
Q Consensus 591 l~tgg~DG~I~vWD 604 (604)
|++++.||.|+|||
T Consensus 523 l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 523 IASASDDKTVKLWN 536 (577)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEECcCEEEEEe
Confidence 99999999999997
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=318.98 Aligned_cols=326 Identities=16% Similarity=0.210 Sum_probs=269.2
Q ss_pred CCCCccccCcce-eeccCccccccceeec----CCCccccCCCCcc-cCcceeEE------ecCCCCCeEEEEEcCCCCC
Q 007431 260 GEKGEHVEDKST-FHGKEETDYQGRSWIA----PPKDAKAANDHCY-IPKRLVHT------WSGHTKGVSAIRFFPKYGH 327 (604)
Q Consensus 260 ~~~~~~~~~~s~-~~~~~~~d~~~r~w~~----~~~~~~~~~~~~~-~p~~~i~t------l~gH~~~V~~l~fsp~~g~ 327 (604)
......+.+... +......|...+.|-. ..... .+.. ....+.+. ..+|...|++++|+|+ +.
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~ 121 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK----YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GN 121 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC----------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SS
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc----cccccccccccccccccccccCCCCceEEEEEcCC-CC
Confidence 344455555555 6677777888888866 22210 0000 01111122 2337889999999999 99
Q ss_pred EEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-------
Q 007431 328 LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI------- 400 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~------- 400 (604)
+|++|+.||.|+||+. .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 9999999999999994 7788899999999999999999999999999999999999999999888866543
Q ss_pred ---------ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007431 401 ---------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 401 ---------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
...+.+.+. ..+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 455666653 4699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007431 472 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 551 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg 551 (604)
++.......+. .|...+.+++|+|++ +|++++.|+.|++||+.+...+.. +..| ...+.+++|+|++++|+++
T Consensus 276 ~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 276 GGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL---SIVD--GVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp SSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE---EECT--TCCEEEEEECTTSSEEEEE
T ss_pred CCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe---cccC--CccEEEEEEcCCCCEEEEE
Confidence 99887776664 588899999999999 999999999999999988765533 3333 4578899999999999999
Q ss_pred cCCCcEEEEeCCCCe--------------------eEEEEecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 552 DGEGKCWFWDWKSCK--------------------VFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 552 s~dG~I~iwd~~t~~--------------------~~~~l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.||.|++||+.+++ ++..+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEE
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEe
Confidence 999999999999888 8999999976 999999999 677999999999999996
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=312.37 Aligned_cols=297 Identities=13% Similarity=0.279 Sum_probs=241.8
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCCCeeeE-EecCCCCceeeEEEccC---CCEEEE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCND---GTKFLT 374 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~IWd~~~~~~~~~-~~~~h~~~V~~l~fspd---g~~L~s 374 (604)
|..+.+.+.+|...|++++|+|++..++++|+. ||.|+||++ ..++... ...+|...|.+++|+|+ +.+|++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-QHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE-CSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC-CCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 344567778999999999999994456667776 999999999 4554433 34479999999999998 699999
Q ss_pred EECCCcEEEEECCCCc-EEEEeeCC-CcceEEEEcc---CCCCCcEEEEEEcCCeEEEEeCCCCc-eEEEEcCcCC----
Q 007431 375 ASYDKNIKYWDTETGQ-VIRTFSTG-KIPYVVKLNP---DDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLG---- 444 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~-~i~~~~~~-~~~~~~~~~~---~~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~~~h~~---- 444 (604)
++.||.|++||+.+++ .+..+..+ ..+.++.+.+ ...++.+|++|+.|+.|++||+++++ .+..+..|.+
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999999988 66666543 3345555532 12345789999999999999999886 7777876655
Q ss_pred ceeEEE----EeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC---CCCEEEEEEcCCeEEEEEcCC
Q 007431 445 AVNTIT----FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 445 ~V~~i~----~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.|.++. |+|++++|++++.||.|++||++........ .+...+.+++|+| ++.+|++++.|+.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 789998 6789999999999999999999998875553 4778999999999 999999999999999999987
Q ss_pred ceeecccc--cccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCC-------------------eeEEEEecCC
Q 007431 518 RFQLNKKK--RFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC-------------------KVFRTLKCHE 575 (604)
Q Consensus 518 ~~~~~~~~--~~~~~~~~~~v~~l~~spdg~-~L~sgs~dG~I~iwd~~t~-------------------~~~~~l~~h~ 575 (604)
........ .+.+| ...+.+++|+|+++ +|++|+.||.|++||+.++ +++..+.+|.
T Consensus 244 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 244 QHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred CCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 65443322 22245 56789999999999 8999999999999998753 4678888999
Q ss_pred CcEEEEEEecCCCCEEE-EEeCCCcEEEeC
Q 007431 576 GVCIGCEWHPLEQSKVA-TCGWDGLIKYWD 604 (604)
Q Consensus 576 ~~V~~v~~sp~~~~~l~-tgg~DG~I~vWD 604 (604)
..|.+++|+| ++.+|+ +++.||.|+|||
T Consensus 322 ~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 322 QPISSLDWSP-DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SCEEEEEECS-SSTTEEEEEETTSEEEEEE
T ss_pred CCeeEEEEcC-CCCeEEEEecCCCcEEEEE
Confidence 9999999999 555666 899999999997
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-36 Score=305.26 Aligned_cols=249 Identities=20% Similarity=0.353 Sum_probs=220.1
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEE
Q 007431 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
...+++.+|...|++++|+|++++|++++.||.|+|||+.++..+..+..+. ...++.+.+++ ++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEE
Confidence 4567889999999999999999999999999999999999999998887654 45677787754 6899999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC-CCCEEEEEE
Q 007431 427 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 505 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s 505 (604)
+||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||++...........|...|.+++|+| ++.+|++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999988666666667999999999999 678999999
Q ss_pred cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEE
Q 007431 506 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
.|+.|++||++........ ..++ ...+..+.|+| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTL--TTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEE--ECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcccee--ccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 9999999999765433221 1222 24566788876 7889999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEeC
Q 007431 584 HPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 584 sp~~~~~l~tgg~DG~I~vWD 604 (604)
+| ++.+|++|+.||+|+|||
T Consensus 237 ~p-~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 237 HP-TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CS-SSSEEEEEETTSCEEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEE
Confidence 99 678999999999999997
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-36 Score=312.76 Aligned_cols=284 Identities=15% Similarity=0.186 Sum_probs=240.7
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007431 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
+..|..+|++++|+|+ +++|++|+.|+.|+||++ ..++ .+..+.+|...|++++|+|++++|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEE-ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 4569999999999999 999999999999999999 4665 88889999999999999999999999999999999999
Q ss_pred CCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce---EEE-EcCcCCceeEEEEeCCCCEEE
Q 007431 387 ETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQE-YDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 387 ~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~---~~~-~~~h~~~V~~i~~sp~~~~l~ 459 (604)
.+++....+. ....+.++.+.+++ .+|++|+.|+.|++||++.+.. ... ...|...|.+++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9988655543 33455677777643 7899999999999999988762 333 367899999999999999999
Q ss_pred EEeCCCcEEEEECC------------------CCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007431 460 TSSDDKSLRVWEFG------------------IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 460 sgs~Dg~I~iwdl~------------------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
+++.||.|++||++ ....+..+. .|...+.+++|+|++.+|++++.|+.|++||++++..+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 99999999999954 456666654 58889999999999999999999999999999877654
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--Cee--------------------------------
Q 007431 522 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKV-------------------------------- 567 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t--~~~-------------------------------- 567 (604)
. .+..| ...+.+++|+|++.+|++| .||.|++|++.+ ++.
T Consensus 238 ~---~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 238 A---TLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp E---EEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred E---EEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 3 33444 4578899999999999888 899999999987 421
Q ss_pred E------EEE-ecCCCcEEEEEEecCCC---CEEEEEeCCCcEEEeC
Q 007431 568 F------RTL-KCHEGVCIGCEWHPLEQ---SKVATCGWDGLIKYWD 604 (604)
Q Consensus 568 ~------~~l-~~h~~~V~~v~~sp~~~---~~l~tgg~DG~I~vWD 604 (604)
. ..+ .+|...|++++|++.++ .+|+||+.||.|++||
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 223 38999999999887566 8999999999999996
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.5e-36 Score=318.98 Aligned_cols=274 Identities=22% Similarity=0.442 Sum_probs=236.6
Q ss_pred ccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 007431 266 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 345 (604)
Q Consensus 266 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~ 345 (604)
+.+...+..+...|...+.|-. ...++++++.+|.+.|++++|+|+ +.+|++|+.|++|+|||+ .
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~-------------~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~-~ 180 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDY-------------ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDF-Q 180 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEET-------------TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEET-T
T ss_pred EcCCCCEEEEEeCCCeEEEEEC-------------CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeC-C
Confidence 3344444555566666776643 344667899999999999999999 899999999999999999 6
Q ss_pred CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCe
Q 007431 346 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 346 ~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
..+++.++.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+..+.. ..++.+.++ +.+|++|+.|+.
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD---GTLIASCSNDQT 257 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSC
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC---CCEEEEEcCCCe
Confidence 7889999999999999999999999999999999999999999999988875443 345555553 378999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCC--------------------CCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 007431 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDS--------------------NRRFVTSSDDKSLRVWEFGIPVVIKYISEP 484 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~--------------------~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~ 484 (604)
|++||+++++....+..|...|.++.|+|+ +.+|++|+.|+.|++||++++.++..+. .
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~ 336 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-G 336 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-C
Confidence 999999999999999999999999999986 6789999999999999999999888775 5
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 485 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
|...|.+++|+|++++|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|++.+|++|+.||.|+||+++
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---EEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---EEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8889999999999999999999999999999876544 345556 4679999999999999999999999999863
No 33
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=303.75 Aligned_cols=272 Identities=18% Similarity=0.318 Sum_probs=239.9
Q ss_pred ceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee
Q 007431 270 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 349 (604)
Q Consensus 270 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~ 349 (604)
..+..+...|...|.|...... ..+..++.||...|.+++|+|+ +.++++|+.|++|+|||+ .++++
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~-----------~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~~ 114 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDER-----------LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGKQ 114 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred CCEEEEEcCCCCEEEEECCCCC-----------eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCE
Confidence 3456777889999999653221 1345678999999999999999 899999999999999999 68889
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007431 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
+..+..|...+.+++|+|++++|++++.||.|++||+.+++....+... ....++.+.|++ .+|++|+.|+.|++|
T Consensus 115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG---KYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEE
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC---CEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999988877654 345677777754 689999999999999
Q ss_pred eCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007431 429 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 508 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg 508 (604)
|+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|+
T Consensus 192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999988877664 6888999999999999999999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 509 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 509 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.|++||+.++..+. .+.+| ...|.+++|+|+|++|++++.||.|++||..
T Consensus 271 ~v~iwd~~~~~~~~---~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 SVKVWDVGTRTCVH---TFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEETTTTEEEE---EECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEeCCCCEEEE---EEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999876653 34455 4678899999999999999999999999963
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.2e-36 Score=310.48 Aligned_cols=290 Identities=17% Similarity=0.256 Sum_probs=240.6
Q ss_pred EEecCCCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCCCeeeEEecC-----CCCceeeEEEccC----CCEEEE
Q 007431 307 HTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-----HSKAVRDISFCND----GTKFLT 374 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~---~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-----h~~~V~~l~fspd----g~~L~s 374 (604)
....+|...|++|+|+|+ +..++++++.++.|+||++ ..+..+..+.. |...|++++|+|+ +.+|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 445699999999999984 4566777777789999999 45655555543 5678999999998 679999
Q ss_pred EECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCCceeEEE
Q 007431 375 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTIT 450 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~~V~~i~ 450 (604)
|+.||.|++||+.+++.+..+.. ...+.++.|.+. ++.+|++|+.||.|++||+++++.+..+ ..|...|.+++
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 99999999999999999998874 445667777762 3378999999999999999999999988 78999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------eecCCCCcccEEEEcCCCCEEEE
Q 007431 451 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKY---------------------------ISEPHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~---------------------------~~~~~~~~v~~l~~sp~g~~l~s 503 (604)
|+|++++|++++.||.|++||++....... ....|...|.+++|+ +++|++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 246 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS 246 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence 999999999999999999999986543221 112388899999998 779999
Q ss_pred EEcCCeEEEEEcCCceee-----------cccccccCcccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCCCCe----
Q 007431 504 QSLDNQILIYSTRERFQL-----------NKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKSCK---- 566 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~spd--g~~L~sgs~dG~I~iwd~~t~~---- 566 (604)
++.|+.|++||+.+.... .....+.+| ...+.+++|+|+ +++|++|+.||.|++||+.+++
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 999999999999775431 112333344 345777899999 9999999999999999999875
Q ss_pred eEEEEecC--CCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 567 VFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 567 ~~~~l~~h--~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+..| ...|.+++|+| ++.+|++++.||.|+|||
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEE
Confidence 44578877 68999999999 788999999999999997
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.4e-35 Score=300.93 Aligned_cols=281 Identities=21% Similarity=0.408 Sum_probs=232.5
Q ss_pred eeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee
Q 007431 271 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM 350 (604)
Q Consensus 271 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~ 350 (604)
.+..+...|...|.|.....+. ....+++++.+|...|++++|+|+ +.+|++|+.|++|+|||+ .+++++
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~-~~~~~~ 100 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDV-ATGETY 100 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEE
T ss_pred cEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCCee
Confidence 4567778899999996532211 113467889999999999999999 999999999999999999 688999
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCC---CCcEEEEEEcCCeEE
Q 007431 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDD---KQNILLAGMSDKKIV 426 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~---~~~~lvsg~~dg~I~ 426 (604)
..+.+|...|.+++|+|++.+|++|+.|++|++||+.. .++..+.. ......+.+.+... ....+++++.|+.|+
T Consensus 101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 179 (319)
T 3frx_A 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179 (319)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence 99999999999999999999999999999999999974 45555543 34455677776432 345899999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007431 427 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
+||+++.+....+.+|...|++++|+|++++|++++.||.|++||+.....+..+. +...|.+++|+|++.+|++++.
T Consensus 180 ~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp EEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred EEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999888775 3568999999999999988774
Q ss_pred CCeEEEEEcCCceeeccccc-ccC--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 507 DNQILIYSTRERFQLNKKKR-FAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 507 Dg~I~iwd~~~~~~~~~~~~-~~~--~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
+.|++|++........... +.+ ......+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 258 -~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 -TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 5599999987654433221 111 112456788999999999999999999999998764
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-36 Score=319.46 Aligned_cols=287 Identities=13% Similarity=0.173 Sum_probs=224.1
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007431 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
.+..|.++|++++|+|+ +.+|++|+.|+.|+||++ ..+ +++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQ-DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEE-ETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEc-cCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34557789999999999 999999999999999999 455 78888999999999999999999999999999999999
Q ss_pred CCCCc---EEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc---eEEEEcC-cCCceeEEEEeCCCCE
Q 007431 386 TETGQ---VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQ-HLGAVNTITFVDSNRR 457 (604)
Q Consensus 386 ~~t~~---~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~---~~~~~~~-h~~~V~~i~~sp~~~~ 457 (604)
+.+++ ....+. ....+.++.+.+++ .+|++|+.|+.|++||+++++ ....+.. |...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 99887 444443 33455667776643 679999999999999999887 4677777 9999999999999999
Q ss_pred EEEEeCCCcEEEEECCC------------------CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007431 458 FVTSSDDKSLRVWEFGI------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~------------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
|++++.|+.|++||+.. ...+..+ .|...|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999852 3344444 788899999999999999999999999999998865
Q ss_pred eec-ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-C--------------------------------
Q 007431 520 QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-C-------------------------------- 565 (604)
Q Consensus 520 ~~~-~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~-------------------------------- 565 (604)
... ....+.+| ...+.+++|+|+|++|++|+.++.+ +|+... +
T Consensus 239 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 239 QPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp SCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 411 13445555 4678899999999999999876655 665541 1
Q ss_pred ------eeEEEE-------------ecCCCcEEEEEEecCCCC---EEEEEeCCCcEEEeC
Q 007431 566 ------KVFRTL-------------KCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 604 (604)
Q Consensus 566 ------~~~~~l-------------~~h~~~V~~v~~sp~~~~---~l~tgg~DG~I~vWD 604 (604)
..+..+ ..|...|+++++.+.++. .|+|||.||.|+|||
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 001110 128999999998874444 699999999999998
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-36 Score=324.79 Aligned_cols=296 Identities=13% Similarity=0.188 Sum_probs=230.2
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-eeeEEecCCCCceeeEEEcc-CCCEEEEEECCCc
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 380 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~ 380 (604)
.++.....+|...|+||+|+|.++.+||+|+.||+|+|||+.... ..+..+.+|.+.|++|+|+| ++++|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 355667789999999999999768899999999999999994322 34455678999999999998 7899999999999
Q ss_pred EEEEECCCCcEEEEeeCCC---cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-
Q 007431 381 IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR- 456 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~- 456 (604)
|+|||++++.......... ...++.+.+++ .+|++|+.||.|++||++. +.+..+.+|...|++++|+|++.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS---RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT---TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC---CEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence 9999998765443333222 23456666643 7899999999999999975 45667789999999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEe--ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC-cccc
Q 007431 457 RFVTSSDDKSLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVA 533 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~ 533 (604)
+|++++.|+.|++||++.......+ ...|...|.+++|+|++.+|++++.|+.|+|||+.+............ +...
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 7889999999999999876543322 235888999999999999999999999999999987654432221111 1011
Q ss_pred cceEEEEEcCCCCEEEEEc------------CCCcEEEEeCCCCeeEEEEe-cCCCcEEEE-EEecCCCCEEEEEeCCCc
Q 007431 534 GYACQVNFSPDGRFVMSGD------------GEGKCWFWDWKSCKVFRTLK-CHEGVCIGC-EWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs------------~dG~I~iwd~~t~~~~~~l~-~h~~~V~~v-~~sp~~~~~l~tgg~DG~ 599 (604)
..+..+.|+|++.+++++. .++.|++||..+++++..+. .|...|.++ +|+| ++.+|++|+ |+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~ 422 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYH 422 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCc
Confidence 1233456777776666654 23579999999999998875 677788887 6999 677888876 889
Q ss_pred EEEeC
Q 007431 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|+|||
T Consensus 423 i~iW~ 427 (435)
T 4e54_B 423 ILIWS 427 (435)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99997
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=302.53 Aligned_cols=301 Identities=17% Similarity=0.265 Sum_probs=251.4
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEecCCCCeee-EEecCCCCceeeEEEccCCCEEEE
Q 007431 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~--g~~L~sgs~Dg~I~IWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
+...|.+.+..+.+|.+.|++|+|+|+. +.+|++|+.||.|+||++...+..+ ..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4456778899999999999999999995 6999999999999999995435444 788899999999999999999999
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007431 375 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
++.||.|++||+.+++.+........+.++.+.+.. ++.+|++++.||.|++||+++++.+..+..+. .+.++.+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-- 179 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-- 179 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--
Confidence 999999999999999998877777778888884433 33789999999999999999999888887664 56666665
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCCcccEEEEcCCCCE----EEEEEcCCeEEEEEcCCceeecccccccC
Q 007431 455 NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNW----LAAQSLDNQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g~~----l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 529 (604)
...+++++.++.+++|+++..... ..+.......+.++++.++... +++++.|+.|++|+++..........+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 458889999999999999876443 3444455667777777776654 99999999999999987644334445555
Q ss_pred cccc----------cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007431 530 HIVA----------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 530 ~~~~----------~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
|... ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|...|.+++|+| ++.+|++++.|+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 5321 1689999999999999999999999999999999999999999999999999 7889999999886
Q ss_pred EEEe
Q 007431 600 IKYW 603 (604)
Q Consensus 600 I~vW 603 (604)
.+.|
T Consensus 339 ~~~~ 342 (368)
T 3mmy_A 339 SKGH 342 (368)
T ss_dssp TTCG
T ss_pred cccc
Confidence 5443
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=317.35 Aligned_cols=308 Identities=13% Similarity=0.205 Sum_probs=251.3
Q ss_pred ccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---CCeeeEEe
Q 007431 277 ETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTY 353 (604)
Q Consensus 277 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---~~~~~~~~ 353 (604)
..|...+.|-....... +++..+ .|...|++++|+|+ +.+|++|+.||.|+||++.. ....+..+
T Consensus 42 ~~d~~v~iw~~~~~~~~----------~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 109 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----------KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF 109 (416)
T ss_dssp CCCCCCEEEESSSGGGC----------SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC
T ss_pred CCCCeEEEEEccCCCCC----------cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc
Confidence 56778888865433210 122233 58999999999999 89999999999999999943 14588889
Q ss_pred cCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCCc------EEEEe----eCCCcceEEEEccCCCCCcEEEEEEcC
Q 007431 354 MGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ------VIRTF----STGKIPYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 354 ~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~~------~i~~~----~~~~~~~~~~~~~~~~~~~~lvsg~~d 422 (604)
.+|...|++++|+|+ +++|++++.|+.|++||+.+++ ....+ .....+.++.+.+++ +.+|++++.|
T Consensus 110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 187 (416)
T 2pm9_A 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSS 187 (416)
T ss_dssp CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSS
T ss_pred cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCC
Confidence 999999999999998 8999999999999999999886 33322 233456677777753 3789999999
Q ss_pred CeEEEEeCCCCceEEEEcCc------CCceeEEEEeCCC-CEEEEEeCCC---cEEEEECCCC-eEEEEeecCCCCcccE
Q 007431 423 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSN-RRFVTSSDDK---SLRVWEFGIP-VVIKYISEPHMHSMPS 491 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h------~~~V~~i~~sp~~-~~l~sgs~Dg---~I~iwdl~~~-~~~~~~~~~~~~~v~~ 491 (604)
+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++.. .....+...|...|.+
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 99999999999999998877 7899999999997 6899999998 9999999986 3444333268889999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEE
Q 007431 492 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 492 l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
++|+| ++.+|++++.|+.|++||+.++..+. .+.+| ...+.+++|+|++ .+|++++.||.|++||+.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---QFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEEE---EEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---eecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999 89999999999999999998876543 34445 4567889999999 899999999999999998765322
Q ss_pred EEe-----------------------------------cCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 570 TLK-----------------------------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 570 ~l~-----------------------------------~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
... .|..++.+++|+| ++.+|++++.||.|+|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITN 411 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEE
Confidence 211 1566778999999 788999999999999997
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-34 Score=296.77 Aligned_cols=278 Identities=22% Similarity=0.322 Sum_probs=235.7
Q ss_pred CCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 007431 261 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 340 (604)
Q Consensus 261 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~I 340 (604)
.....+.+...+..+...|...|.|-. ...+.++++..|...|.+++|+|+ +.+|++|+.|+.|++
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~i 123 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDS-------------YTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSI 123 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEET-------------TTCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEC-------------CCCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEE
Confidence 333444555556667777888888843 233567889999999999999999 999999999999999
Q ss_pred EecCCCC---eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEE
Q 007431 341 WDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 341 Wd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l 416 (604)
|++.... .....+.+|...|.++.|++++. |++++.|+.|++||+.+++++..+..+ ..+.++.+.+++ .++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l 199 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT---RLF 199 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC---CEE
Confidence 9994322 46677889999999999998764 899999999999999999999888654 345667777643 689
Q ss_pred EEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEc
Q 007431 417 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLH 495 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~s 495 (604)
++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++++.||+|++||++....+..+.. .+...|.+++|+
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999887766642 234579999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007431 496 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 496 p~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
|++++|++++.|+.|++||+.+.... ..+.+| ...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRA---GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEe---eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999876544 345566 56799999999999999999999999997
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=289.13 Aligned_cols=291 Identities=16% Similarity=0.304 Sum_probs=237.1
Q ss_pred cccCcceeEEecC--CCC--CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec--CCCCceeeEEEccCCCEE
Q 007431 299 CYIPKRLVHTWSG--HTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKF 372 (604)
Q Consensus 299 ~~~p~~~i~tl~g--H~~--~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~L 372 (604)
.++|..+.+.|.. ... .+++|+||++ + +|++| .|++|+|||+ .++++++.+. +|...|++++|+|++++|
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~-~-~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSG-N-VLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTT-S-EEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCC-C-EEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 4666666667653 222 3578999987 3 77665 5999999999 6788777664 678889999999999999
Q ss_pred EEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEE
Q 007431 373 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 451 (604)
Q Consensus 373 ~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~ 451 (604)
++|+.||+|++||+++++++..+..+. ..+..+.+.+ .++++|+.++.+++|+.... ..+..+.+|...+.++.+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCcc-ceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999999999998887544 3444555543 68999999999999999876 566778899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeEE---EEeecCCCCcccEEEEcCCCCEE---EEEEcCCeEEEEEcCCceeecccc
Q 007431 452 VDSNRRFVTSSDDKSLRVWEFGIPVVI---KYISEPHMHSMPSISLHPNTNWL---AAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 452 sp~~~~l~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l---~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
.+++++|++++.|+.|++||++++... ......+...|.++.++|.+..+ ++++.++.|++|+...........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999999865421 22233577789999999976533 345678999999988765442211
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 526 RFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs--~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
....+..+.|+|++..+++++ .||.|++||+.+++++.++.+|.+.|++++|+| ++.+|+|||.||+|+||
T Consensus 239 ------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 239 ------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 311 (318)
T ss_dssp ------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEE
T ss_pred ------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEE
Confidence 135577899999999887654 799999999999999999999999999999999 77899999999999999
Q ss_pred C
Q 007431 604 D 604 (604)
Q Consensus 604 D 604 (604)
|
T Consensus 312 d 312 (318)
T 4ggc_A 312 R 312 (318)
T ss_dssp C
T ss_pred E
Confidence 7
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-34 Score=330.81 Aligned_cols=291 Identities=19% Similarity=0.335 Sum_probs=257.6
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
++.+++.+|++.|++++|+|+ +.+|++|+.||.|+|||+ .++..+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 567889999999999999999 999999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEE
Q 007431 384 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 460 (604)
Q Consensus 384 WD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp-~~~~l~s 460 (604)
||+.+++.+..+..+ ..+.++.|++++ .+|++|+.||.|++||+.++ .....+.+|...|.+++|+| ++..|++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 999999999888743 456677887754 57999999999999999987 67788889999999999999 8889999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007431 461 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
++.||.|++||+..+.....+...+...+.+++|+| ++.+|++++.|+.|++||+.++..+. .+.+| ...+.+
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~--~~~v~~ 233 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---TLEGH--MSNVSF 233 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE---EEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE---EEcCC--CCCEEE
Confidence 999999999999888777777666668999999999 99999999999999999998876543 34445 467889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 539 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++|+|++++|++|+.||.|++||+.+++.+..+..|...+.+++|+|++...+++++.|+.+.+|+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 999999999999999999999999999999999999999999999995555444555566677763
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-34 Score=302.99 Aligned_cols=280 Identities=15% Similarity=0.293 Sum_probs=234.2
Q ss_pred EecCCCCCeE--EEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-CCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007431 308 TWSGHTKGVS--AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 308 tl~gH~~~V~--~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
...+|...+. ++.|++ ..+++++.|+.|+||++ .++.....+.. |...|.+++|+|++++|++|+.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 3447776644 455554 45778889999999999 56766666655 89999999999999999999999999999
Q ss_pred ECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-CCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007431 385 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 385 D~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
|+.+++.+..+..+. .+.++.+ + +.++++|+.||.|++||++ ....+..+..|.+.|.+++|+|++++|++++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW--N---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ECcCCeEEEEecCCCCceEEEEE--C---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999998886433 3344444 2 2689999999999999999 5677888999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCC-EEEEEE--cCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007431 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
.|+.|++||++.......+. .|...|.+++|+|++. ++++++ .|+.|++||+.++..+.... . ...+.++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~---~~~v~~~ 309 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---A---GSQVTSL 309 (401)
T ss_dssp TTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---C---SSCEEEE
T ss_pred CCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---C---CCcEEEE
Confidence 99999999999988877764 5888999999999764 555554 69999999998876554332 1 3568899
Q ss_pred EEcCCCCEEEE--EcCCCcEEEEeCCCCeeEE--EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 540 NFSPDGRFVMS--GDGEGKCWFWDWKSCKVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~s--gs~dG~I~iwd~~t~~~~~--~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWR 377 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 99999999999 5589999999999976554 4678999999999999 788999999999999996
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.4e-34 Score=302.84 Aligned_cols=289 Identities=17% Similarity=0.300 Sum_probs=237.1
Q ss_pred cCcceeEEecCC----CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec--CCCCceeeEEEccCCCEEEE
Q 007431 301 IPKRLVHTWSGH----TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 301 ~p~~~i~tl~gH----~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~L~s 374 (604)
+|..+.+.|..- .-.++.|+|+++ ++|++|. |++|+|||+ .+++++..+. +|...|++|+|+|+|++|++
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~--n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVAL-DNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEEE-TTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred cCCCCceEEECCCCcccccceeEEECCC--CEEEEEe-CCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 444444444432 224788999976 5777765 999999999 6777776654 67888999999999999999
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC
Q 007431 375 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp 453 (604)
|+.||.|+|||+.+++++..+..+ ...+.++.+++ .++++|+.|+.+++||.... ..+..+.+|...+.++.++|
T Consensus 165 gs~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 165 GTSSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EECCCeEEEEEcCCCcEEEEEeCC-CCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 999999999999999999888654 34455555543 68999999999999999874 56678899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCC-CEEEEE--EcCCeEEEEEcCCceeecccccc
Q 007431 454 SNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNT-NWLAAQ--SLDNQILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g-~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~ 527 (604)
+++++++++.|+.|++|++..+.. .......+...|.+++|+|.+ .+++++ +.|+.|++||+.++.......
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-- 318 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-- 318 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--
Confidence 999999999999999999976542 112234588899999999975 455554 478999999999887654332
Q ss_pred cCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 528 AGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs--~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
. ...++++.|+|+++.|++++ .||.|+|||+.+++++..+.+|.+.|++++|+| ++.+|+|||.||+|+|||
T Consensus 319 -~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 319 -A---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 392 (420)
T ss_dssp -C---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEEC
T ss_pred -c---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEE
Confidence 2 25678899999999988765 789999999999999999999999999999999 778999999999999997
No 45
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-34 Score=306.34 Aligned_cols=266 Identities=21% Similarity=0.376 Sum_probs=222.1
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC------CeeeEEecCCCCceeeEEEccC-CC
Q 007431 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCND-GT 370 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~------~~~~~~~~~h~~~V~~l~fspd-g~ 370 (604)
|+....+.++++.+|...|.+++|+|+ +.+|++|+.|+.|+||++... ......+.+|.+.|.++.|+|+ +.
T Consensus 93 Wd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~ 171 (380)
T 3iz6_a 93 WNALTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171 (380)
T ss_dssp EETTTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS
T ss_pred EECCCCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC
Confidence 344455778899999999999999999 999999999999999998421 1245668899999999999996 56
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEee----CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-CCceEEEEcCcCCc
Q 007431 371 KFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGA 445 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-s~~~~~~~~~h~~~ 445 (604)
.|++|+.|++|++||+.+++.+..+. .++...+..+...+.+.++|++|+.|+.|++||++ .+..+..+.+|.+.
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence 79999999999999999999988773 23444444444433455899999999999999998 45788899999999
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC------CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007431 446 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~------~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
|++++|+|++++|++++.||+|++||++++..+..+.... ...+.+++|+|++++|++|+.||.|++||+....
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 9999999999999999999999999999998887764321 2348999999999999999999999999998766
Q ss_pred eecccccc-cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 520 QLNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 520 ~~~~~~~~-~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
........ .+| ...|.+++|+|+|++|++|+.||.|+||++...+
T Consensus 332 ~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 332 MVLNLGTLQNSH--EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSCSSC--CCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEecccCCC--CCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 55433222 345 5678899999999999999999999999987654
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=295.49 Aligned_cols=283 Identities=22% Similarity=0.320 Sum_probs=239.3
Q ss_pred CCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 007431 259 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 338 (604)
Q Consensus 259 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 338 (604)
+......+.+...+..+...|...|.|-.. +.+..+.+..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-------------~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSF-------------TTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT-------------TCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECC-------------CCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCE
Confidence 333344455555666777788888888532 34567788899999999999999 9999999999999
Q ss_pred EEEecCCC-----CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCC
Q 007431 339 KIWDVVNS-----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDK 412 (604)
Q Consensus 339 ~IWd~~~~-----~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~ 412 (604)
++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+..+. .+.++.+.+.. .
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 209 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-T 209 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS-S
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC-C
Confidence 99998422 13456778899999999999999999999999999999999999999887544 45567777653 2
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccE
Q 007431 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPS 491 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~ 491 (604)
+++|++|+.||.|++||+++++.+..+..|...|++++|+|++.+|++++.|++|++||++....+..+.. .+...+.+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 47899999999999999999999999999999999999999999999999999999999998877665543 23456889
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007431 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||.|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRV---SILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceE---EEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999876554 345566 56799999999999999999999999996
No 47
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=297.59 Aligned_cols=248 Identities=15% Similarity=0.259 Sum_probs=205.5
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE----EecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR----TYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~----~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
....|..+|++++|+|+ ..|++|+.||+|+|||+ .+++.+. .+.+|...|++|+|+|+|++|++|+.|++|+|
T Consensus 77 ~~~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~-~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGE--RGILVASDSGAVELWEL-DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEEEESSCEEEEEEETT--TEEEEEETTSEEEEEEE-CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeccCCCEEEEEEeCC--CeEEEEECCCEEEEEec-cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 33457788999999998 47889999999999999 4554433 34589999999999999999999999999999
Q ss_pred EECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCC-CCEEE
Q 007431 384 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDS-NRRFV 459 (604)
Q Consensus 384 WD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--~h~~~V~~i~~sp~-~~~l~ 459 (604)
||+.+++++..+..+ ..+.++.|.+++ ..+|++|+.|+.|++||+++++....+. .|...+.+++|+|+ +++|+
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHK--DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSC--TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCC--CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 999999999998754 345566776654 3689999999999999999999887764 45667999999985 56889
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
+|+.||.|++||+++++++..+. .|...|.+++|+|++ ++|++++.|+.|+|||+.++... .+.+| ...|.+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H--~~~V~~ 304 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAH--RDFVRD 304 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----EECCC--SSCEEE
T ss_pred EeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCC--CCCEEE
Confidence 99999999999999988887765 589999999999997 58999999999999999877543 34566 577999
Q ss_pred EEEcCCCC-EEEEEcCCCcEEEEeCCCCee
Q 007431 539 VNFSPDGR-FVMSGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 539 l~~spdg~-~L~sgs~dG~I~iwd~~t~~~ 567 (604)
++|+|+++ +|++|+.||+|++|++.+...
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999986 577899999999999987543
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=299.35 Aligned_cols=281 Identities=14% Similarity=0.249 Sum_probs=238.6
Q ss_pred cCCCCCeEEEEEcCCCCC-EEEEEECCCcEEEEec----CCCCe-----eeEEecC----------CCCceeeEEEccCC
Q 007431 310 SGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDV----VNSGK-----CMRTYMG----------HSKAVRDISFCNDG 369 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~IWd~----~~~~~-----~~~~~~~----------h~~~V~~l~fspdg 369 (604)
..|.+.|++++|+|+ +. +|++|+.||.|+||++ ..... ....+.. |...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 356699999999999 77 9999999999999999 53331 3444443 68899999999999
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc---
Q 007431 370 TKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA--- 445 (604)
Q Consensus 370 ~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~--- 445 (604)
++|++++.||.|++|| .+++.+..+..+ ..+.++.+.+++ .+|++++.|+.|++||+.+++.+..+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999999999999 667777777643 455677777644 68999999999999999999999999888777
Q ss_pred ------------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007431 446 ------------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 513 (604)
Q Consensus 446 ------------V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iw 513 (604)
+.++.|++++ .+++++.+|.|++||+.....+..+. .|...|.+++|+|++++|++++.|+.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9999999875 68899999999999999887776664 588899999999999999999999999999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEE
Q 007431 514 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~t 593 (604)
|+.+..... .+.+| ...+.+++|+|++ +|++++.||.|++||+.+++++..+..|...|.+++|+| ++.+|++
T Consensus 275 d~~~~~~~~---~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQN---CFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAV 347 (425)
T ss_dssp CSSSBSCSE---EECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEE
T ss_pred ECCCCccce---EecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEE
Confidence 998765443 33344 4678899999999 999999999999999999999999999999999999999 7789999
Q ss_pred EeCCCcEEEeC
Q 007431 594 CGWDGLIKYWD 604 (604)
Q Consensus 594 gg~DG~I~vWD 604 (604)
++.||.|++||
T Consensus 348 ~~~dg~i~i~~ 358 (425)
T 1r5m_A 348 AFMDGQVNVYD 358 (425)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999997
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-34 Score=304.95 Aligned_cols=316 Identities=12% Similarity=0.104 Sum_probs=251.4
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007431 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
.+.+...+......|...+.|-..... ....+.+| ..+....|+|+ +.+|++|+.||.|+|||+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~-------------~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~- 126 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRD-------------GSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS- 126 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEE-------------TTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT-
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccc-------------eeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC-
Confidence 344444445555667777777543321 22233345 34455567887 899999999999999999
Q ss_pred CCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCC
Q 007431 345 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
..+.+...+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+..+ ..+.++.+.+++ .+|++|+.|+
T Consensus 127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~ 203 (420)
T 3vl1_A 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---RNVLSASLDG 203 (420)
T ss_dssp TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---TEEEEEETTS
T ss_pred CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---CEEEEEcCCC
Confidence 678888888899999999999999999999999999999999999988888643 455677887754 6899999999
Q ss_pred eEEEEeCCCCceEEEEcC---cCCceeEEE---------------------EeCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 007431 424 KIVQWDMNTKEITQEYDQ---HLGAVNTIT---------------------FVDSNRRFVTSSDDKSLRVWEFGIPVVIK 479 (604)
Q Consensus 424 ~I~iwD~~s~~~~~~~~~---h~~~V~~i~---------------------~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~ 479 (604)
.|++||+++++.+..+.. |...|.++. |+|++++|++++.||.|++||+++.....
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 999999999999998875 334455544 56889999999999999999999999888
Q ss_pred EeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007431 480 YISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 480 ~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
.+...|...+.+++|+|++. +|++++.||.|++||+++.... ...+.++. ...+.++ +++++++|++++.||.|+
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINE-GTPINNV-YFAAGALFVSSGFDTSIK 359 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEEST-TSCEEEE-EEETTEEEEEETTTEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccC-CCCceEE-EeCCCCEEEEecCCccEE
Confidence 88777889999999999998 9999999999999999876431 22333321 3456666 456788999999999999
Q ss_pred EEeCCCC---------eeEEEEecCCCcEEEEEEecCCCC---EEEEEeCCCcEEEeC
Q 007431 559 FWDWKSC---------KVFRTLKCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 604 (604)
Q Consensus 559 iwd~~t~---------~~~~~l~~h~~~V~~v~~sp~~~~---~l~tgg~DG~I~vWD 604 (604)
+|++... .....+..|.+.|.+++|+| ++. .|+++|.+|.+.+|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence 9998763 22344667889999999999 555 678888899999995
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=309.11 Aligned_cols=285 Identities=15% Similarity=0.303 Sum_probs=240.4
Q ss_pred CCCCeEEEEEcCCCCCEEEEE----------ECCCcEEEEecCCCCe---eeEEecCCCCceeeEEEccCCCEEEEEECC
Q 007431 312 HTKGVSAIRFFPKYGHLILSA----------GMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sg----------s~Dg~I~IWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
+...|.+++|+|++..+|++| +.|+.|+||++. .+. ++..+ .|...|++++|+|++++|++++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC
Confidence 335689999999944599999 899999999994 443 34433 589999999999999999999999
Q ss_pred CcEEEEECCC----CcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc------eEEE---EcCcCC
Q 007431 379 KNIKYWDTET----GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQE---YDQHLG 444 (604)
Q Consensus 379 g~I~vWD~~t----~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~------~~~~---~~~h~~ 444 (604)
|.|++||+.+ .+.+..+.. ...+.++.+++++ +.+|++++.|+.|++||+.+++ .... +..|..
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 9999999988 346666654 3456678887752 3689999999999999999876 3332 367899
Q ss_pred ceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCC-----CCcccEEEEcCCC-CEEEEEEcCC---eEEEEE
Q 007431 445 AVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNT-NWLAAQSLDN---QILIYS 514 (604)
Q Consensus 445 ~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~-----~~~v~~l~~sp~g-~~l~s~s~Dg---~I~iwd 514 (604)
.|.+++|+|+ +.+|++++.|+.|++||++....+..+.... ...+.+++|+|++ .+|++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 7899999999999999999998888776432 7789999999997 6899999998 999999
Q ss_pred cCCceeeccccccc-CcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEE
Q 007431 515 TRERFQLNKKKRFA-GHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 515 ~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 592 (604)
+++.... ...+. +| ...+.+++|+| ++++|++++.||.|++||+.+++++..+..|...|.+++|+|++..+|+
T Consensus 247 ~~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 247 LRNANTP--LQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp TTSTTSC--SBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred CCCCCCC--cEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 9875322 23344 45 56789999999 9999999999999999999999999999999999999999995548999
Q ss_pred EEeCCCcEEEeC
Q 007431 593 TCGWDGLIKYWD 604 (604)
Q Consensus 593 tgg~DG~I~vWD 604 (604)
+++.||.|+|||
T Consensus 323 s~~~d~~i~iw~ 334 (416)
T 2pm9_A 323 CASFDNKIEVQT 334 (416)
T ss_dssp ECCSSSEEEEEE
T ss_pred EEecCCcEEEEE
Confidence 999999999996
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-33 Score=300.38 Aligned_cols=299 Identities=19% Similarity=0.348 Sum_probs=248.9
Q ss_pred ccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe
Q 007431 274 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY 353 (604)
Q Consensus 274 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~ 353 (604)
.+...|...|.|- ....+++.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ .+++++..+
T Consensus 136 ~sgs~dg~i~vwd-------------~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~~~~ 199 (464)
T 3v7d_B 136 ITGADDKMIRVYD-------------SINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCTHVF 199 (464)
T ss_dssp EEEETTSCEEEEE-------------TTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEEEEE
T ss_pred EEEcCCCcEEEEE-------------CCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEEEEE
Confidence 4445555666663 3345788999999999999999998 4 9999999999999999 688899999
Q ss_pred cCCCCceeeEEEcc--CCCEEEEEECCCcEEEEECCCCcEEEE----------------------eeCCCcceEEEEccC
Q 007431 354 MGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRT----------------------FSTGKIPYVVKLNPD 409 (604)
Q Consensus 354 ~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~vWD~~t~~~i~~----------------------~~~~~~~~~~~~~~~ 409 (604)
.+|...|.+++|++ ++.+|++++.||.|++||+.++..... ...++...+.++.++
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 279 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC
Confidence 99999999999994 778999999999999999988764321 223344445555543
Q ss_pred CCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcc
Q 007431 410 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 489 (604)
Q Consensus 410 ~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v 489 (604)
+.++++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||++++..+..+. .|...|
T Consensus 280 ---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v 355 (464)
T 3v7d_B 280 ---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALV 355 (464)
T ss_dssp ---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcE
Confidence 3689999999999999999999999999999999999999999999999999999999999999888775 588899
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007431 490 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
.+++++ +.+|++++.||.|++||+.+........ + ...+..++|++++++|++|+ ||.|++||+.+++++.
T Consensus 356 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 356 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----H--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE----C--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec----C--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 999997 5899999999999999998765432221 1 23455689999999999998 8999999999999988
Q ss_pred E-EecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 570 T-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 570 ~-l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
. +..|...|.+++|++ ..++++++.||.+.+|
T Consensus 427 ~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 427 ANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp SCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEE
T ss_pred hhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEE
Confidence 6 567889999999973 5577777778876654
No 52
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3e-33 Score=311.49 Aligned_cols=305 Identities=18% Similarity=0.306 Sum_probs=249.2
Q ss_pred eccCccccccceeecCCCccccCCCCcccCcceeEEecCCCC---CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee
Q 007431 273 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 349 (604)
Q Consensus 273 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~---~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~ 349 (604)
......|...+.|-. .+.+++.++.+|.. .|++++|+|+++.+|++++.||.|++||+ ..++.
T Consensus 176 l~~~~~d~~v~vwd~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~ 241 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQG-------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG-KSGEF 241 (615)
T ss_dssp EEEEETTTEEEEEET-------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET-TTCCE
T ss_pred EEEEeCCCcEEEEeC-------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC-CCCCE
Confidence 344455666676642 34567889999999 99999999986889999999999999999 67888
Q ss_pred eEEe-c---CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-----CcceEEEEccCCCCCcEEEEEE
Q 007431 350 MRTY-M---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAGM 420 (604)
Q Consensus 350 ~~~~-~---~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-----~~~~~~~~~~~~~~~~~lvsg~ 420 (604)
+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+... .....+.+. .+.++++|+
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 316 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISLS 316 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE----ETTEEEEEE
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC----CCCeEEEEE
Confidence 8888 6 899999999999 9999999999999999999999999888765 223333442 347899999
Q ss_pred cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC----------------------------------------------
Q 007431 421 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---------------------------------------------- 454 (604)
Q Consensus 421 ~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~---------------------------------------------- 454 (604)
.++.|++||+.+++.+..+.+|...|++++| |+
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE
Confidence 9999999999988888888777666666555 32
Q ss_pred ------------------------------------------------------------CCEEEEEeC-CCcEEEEECC
Q 007431 455 ------------------------------------------------------------NRRFVTSSD-DKSLRVWEFG 473 (604)
Q Consensus 455 ------------------------------------------------------------~~~l~sgs~-Dg~I~iwdl~ 473 (604)
+++|++++. |+.|++||+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~ 475 (615)
T 1pgu_A 396 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 475 (615)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred EEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECC
Confidence 334444454 5666666655
Q ss_pred CCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC-cccccceEEEEEcC---------
Q 007431 474 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSP--------- 543 (604)
Q Consensus 474 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~sp--------- 543 (604)
...........|...|.+++|+|++++|++++.|+.|++|++.++..+.. +.+ | ...+.+++|+|
T Consensus 476 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~h--~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 476 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFR--TSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCC--SSCEEEEEECCCC------C
T ss_pred CccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE---eecCC--CCceeEEEEcCccccccccc
Confidence 54433233346788999999999999999999999999999988766533 333 4 56799999999
Q ss_pred -CCCEEEEEcCCCcEEEEeCCCC-eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 544 -DGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 -dg~~L~sgs~dG~I~iwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++|++|+.||.|++||+.++ +++..+.+|...|.+++|+| ++. |++++.||.|++||
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWN 611 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEe
Confidence 9999999999999999999998 88999999999999999999 566 99999999999996
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-33 Score=338.24 Aligned_cols=291 Identities=21% Similarity=0.322 Sum_probs=259.4
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007431 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .+++.+..+.+|...|.+++|+|++++|++++.||.|+||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 34578899999999999999 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 385 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 385 D~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
|+.+++++..+..+. .+.++.|.+.. +..++++|+.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 999999999887543 45567777653 3478999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecC------------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007431 464 DKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 531 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~------------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 531 (604)
||.|++||+..+.....+... ....+.+++|+|++..+++++ ++.|.+|++.++....... .+|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~- 839 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGH- 839 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSS-
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCC-
Confidence 999999999988777665421 233688999999999999987 7899999998876553322 234
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 532 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 532 ~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
...+.+++|+|+++++++|+.+|.|++||+.++..+..+.+|.+.|.+++|+| ++.+|++++.||.|++||
T Consensus 840 -~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 840 -HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp -SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred -CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 46788899999999999999999999999999999999999999999999999 788999999999999996
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-33 Score=287.19 Aligned_cols=255 Identities=20% Similarity=0.347 Sum_probs=207.6
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCeeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcEE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIK 382 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~ 382 (604)
+..+.+|.+.|++++|+|+ +++|++|+.|++|+||++.. ..+++.++.+|...|.+++|++ ++++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4567899999999999999 99999999999999999943 3467889999999999999986 489999999999999
Q ss_pred EEECCCCc--EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCC---
Q 007431 383 YWDTETGQ--VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--- 454 (604)
Q Consensus 383 vWD~~t~~--~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~--- 454 (604)
|||+.+++ .+..+.. ...+.++.|.|+. .+.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCC-CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 99999874 3444432 3455677777752 13689999999999999998763 24567789999999999997
Q ss_pred ----------CCEEEEEeCCCcEEEEECCCCe----EEEEeecCCCCcccEEEEcCCC---CEEEEEEcCCeEEEEEcCC
Q 007431 455 ----------NRRFVTSSDDKSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 455 ----------~~~l~sgs~Dg~I~iwdl~~~~----~~~~~~~~~~~~v~~l~~sp~g---~~l~s~s~Dg~I~iwd~~~ 517 (604)
+++|++|+.|++|++||++... ....+ ..|...|.+++|+|++ .+|++++.|+.|+||++..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999997754 33333 4689999999999984 8999999999999999976
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 518 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.........+..+.....+.+++|+|+|++|++++.||.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 4211111112112225678899999999999999999999999976
No 55
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-34 Score=296.38 Aligned_cols=282 Identities=12% Similarity=0.127 Sum_probs=235.5
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe---eeEEecCCCCceeeEEEccCCC-EEEEEECCCcE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNI 381 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I 381 (604)
+....+|.+.|++++|+|+ +.+|++|+.||.|+||++. .+. ....+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3445689999999999998 8999999999999999994 333 3555668999999999999999 99999999999
Q ss_pred EEEEC-CCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC---------CceEEEEcCcCCceeEE
Q 007431 382 KYWDT-ETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTI 449 (604)
Q Consensus 382 ~vWD~-~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s---------~~~~~~~~~h~~~V~~i 449 (604)
++||+ .+++...... ....+.++.+.+ +.++++++.|+.|++||+++ ++.+..+. |...|.++
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 99999 8887643333 344556777776 36899999999999999987 66666665 88999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CeE-EEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEcCCce---eecc
Q 007431 450 TFVDSNRRFVTSSDDKSLRVWEFGI-PVV-IKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERF---QLNK 523 (604)
Q Consensus 450 ~~sp~~~~l~sgs~Dg~I~iwdl~~-~~~-~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~---~~~~ 523 (604)
+|++++ |++++.|+.|++||++. ... .......+...+.+++|+| ++++|++++.||.|++|++.... ....
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 999877 99999999999999987 432 3334446788999999999 99999999999999999987650 0122
Q ss_pred cccccCccc-------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCcEEEEEEecCCCCEEEEEe
Q 007431 524 KKRFAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 524 ~~~~~~~~~-------~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg 595 (604)
...+..|.. ...+.+++|+|++++|++|+.||.|++||+.+++++..+..| ...|.+++ | ++.+|++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s 311 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLAT 311 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEe
Confidence 233444422 347899999999999999999999999999999999999998 99999999 7 778999999
Q ss_pred CCCc
Q 007431 596 WDGL 599 (604)
Q Consensus 596 ~DG~ 599 (604)
.||.
T Consensus 312 ~Dg~ 315 (342)
T 1yfq_A 312 SDDT 315 (342)
T ss_dssp ECTH
T ss_pred cCCc
Confidence 9998
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-34 Score=306.10 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=233.8
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
..+++++|+|+ +.+|++|+.||.|++||+ ..+.....+..| ..+....|++++++|++++.||.|++||+.+++.+.
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 34568999999 899999999999999999 566665555555 445566789999999999999999999999999888
Q ss_pred Eee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007431 394 TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 472 (604)
Q Consensus 394 ~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl 472 (604)
.+. ....+.++.|++++ .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 764 34556677887753 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecC--C---------------------CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC
Q 007431 473 GIPVVIKYISEP--H---------------------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 473 ~~~~~~~~~~~~--~---------------------~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 529 (604)
+++..+..+... + ...+.+++|+|++++|++++.||.|++||+++........ ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~ 288 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SK 288 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CT
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cc
Confidence 999888777531 2 2455666678999999999999999999998876543332 22
Q ss_pred cccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe-eEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 530 HIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 530 ~~~~~~v~~l~~spdg~-~L~sgs~dG~I~iwd~~t~~-~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
| ...+.+++|+|++. +|++|+.||.|++||+.+++ ++..+.. |...|.++.|. ++.+|++++.||.|++||
T Consensus 289 ~--~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 289 F--TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp T--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred c--CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 3 46788999999999 99999999999999999875 4777776 56677777554 456999999999999996
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-32 Score=297.11 Aligned_cols=281 Identities=16% Similarity=0.326 Sum_probs=241.2
Q ss_pred eeEEecCCCCCe-EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 305 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 305 ~i~tl~gH~~~V-~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
...++.+|...| +|+.+. +.+|++|+.||+|++||+ .+++++..+.+|...|.+++|++++ +|++|+.||+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456889999885 666663 679999999999999999 7889999999999999999999987 9999999999999
Q ss_pred EECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-----------------------eEEEE
Q 007431 384 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----------------------ITQEY 439 (604)
Q Consensus 384 WD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-----------------------~~~~~ 439 (604)
||+.+++++..+..+ ..+.++.+.+.+ ++.++++|+.|+.|++||++++. .+..+
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 999999999888743 455677777643 34789999999999999998765 25567
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007431 440 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
.+|...|.++ ++++++|++++.||.|++||+++...+..+. .|...|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 8899988887 5678899999999999999999998887774 588999999999999999999999999999998876
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007431 520 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 520 ~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
.+. .+.+| ...+.++.|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++|+ ||.
T Consensus 344 ~~~---~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 344 LMY---TLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQ 413 (464)
T ss_dssp EEE---EECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTE
T ss_pred EEE---EEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCe
Confidence 553 34455 4668888887 5799999999999999999988776664 666778889999 777899888 999
Q ss_pred EEEeC
Q 007431 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|++||
T Consensus 414 i~iwd 418 (464)
T 3v7d_B 414 FNIYN 418 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-33 Score=290.48 Aligned_cols=282 Identities=16% Similarity=0.299 Sum_probs=224.0
Q ss_pred cceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe
Q 007431 269 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK 348 (604)
Q Consensus 269 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~ 348 (604)
...+..+...|...|.|-....... .....+..++.+|...|++++|+|+ +.+|++|+.|++|+|||+ .+++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~ 109 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------GYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGT 109 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------SBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------cccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCc
Confidence 4456677888999999965432210 0123457789999999999999999 899999999999999999 6788
Q ss_pred eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee----CCCcceEEEEccCCCC-------CcEEE
Q 007431 349 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVVKLNPDDDK-------QNILL 417 (604)
Q Consensus 349 ~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~----~~~~~~~~~~~~~~~~-------~~~lv 417 (604)
++..+.+|...|.+++|+|++++|++++.|+.|++||+... ...... ......++.+.+.... ..+|+
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 89999999999999999999999999999999999999843 333332 2334567777775421 26899
Q ss_pred EEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCcccEEEEcC
Q 007431 418 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp 496 (604)
+++.|+.|++|| ........+.+|...|++++|+|++++|++|+.||.|++||+.. ......+. +...|.+++|+|
T Consensus 189 s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp 265 (343)
T 2xzm_R 189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNP 265 (343)
T ss_dssp EEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECS
T ss_pred EEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECC
Confidence 999999999999 45667778889999999999999999999999999999999943 33333332 455799999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeec--ccc--------cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 497 NTNWLAAQSLDNQILIYSTRERFQLN--KKK--------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~~~~~~--~~~--------~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
++.++++ +.|+.|++|++.+..... ... ...+| ...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 266 ~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 KLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK--NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS--CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC--CCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9988765 458889999997654322 111 01133 456889999999999999999999999998664
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.8e-34 Score=300.57 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=219.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCC-------cEEEEecCCCCe---------eeEEecCCCCceeeEEEccCCCEEEEEE
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDT-------KVKIWDVVNSGK---------CMRTYMGHSKAVRDISFCNDGTKFLTAS 376 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg-------~I~IWd~~~~~~---------~~~~~~~h~~~V~~l~fspdg~~L~s~s 376 (604)
.-+|+|++|+|+ +++|++|+.+. .|+||++..... ....+.+|...|.+++++ ++.+++++
T Consensus 14 g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 458999999999 99999998643 599999843321 113467888899888774 55677664
Q ss_pred -----------CCCcEEEEECCCCcEEEE----eeC------CCcceEEEEccCCCCCcEEEE--EEcCCeEEEEeCCCC
Q 007431 377 -----------YDKNIKYWDTETGQVIRT----FST------GKIPYVVKLNPDDDKQNILLA--GMSDKKIVQWDMNTK 433 (604)
Q Consensus 377 -----------~Dg~I~vWD~~t~~~i~~----~~~------~~~~~~~~~~~~~~~~~~lvs--g~~dg~I~iwD~~s~ 433 (604)
.|+.|++|++.+...... ... .....+++|+|++ .++++ ++.|+.|++||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg---~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG---TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS---SCEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC---CEEEEEECCCCCEEEEeECCCC
Confidence 467899999876532211 111 1224578888765 34443 446899999999999
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCCcccEEEEcCCCCEEEEEEcCC----
Q 007431 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPSISLHPNTNWLAAQSLDN---- 508 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg---- 508 (604)
+.+..+. |.+.|.+++|+|++++|++++.+ .+++|+..++..+. .....|...|.+++|+|++.++++++.|+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 9988886 77889999999999999999855 56677766665544 44456788899999999999999999887
Q ss_pred eEEEEEcCCceee-cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-ecCCCcEEEEEEecC
Q 007431 509 QILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPL 586 (604)
Q Consensus 509 ~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~ 586 (604)
.+++|++...... .....+.+| ...|++++|||+|++|++|+.||.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp- 322 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNR--FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP- 322 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESS--CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-
T ss_pred EEeecccccceecceeeeeecCC--CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-
Confidence 6888988665332 223344555 467899999999999999999999999999999999886 68999999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 007431 587 EQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 587 ~~~~l~tgg~DG~I~vWD 604 (604)
++.+|||||.|++|+|||
T Consensus 323 dg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 788999999999999996
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-33 Score=287.44 Aligned_cols=278 Identities=15% Similarity=0.258 Sum_probs=236.5
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
|.++|.+++|+|+ |++++++..++.+.+|........+. ..+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 5678999999999 89999888888887777633334444 447999999999999999999999 99999999987753
Q ss_pred E---EEe---eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 392 I---RTF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 392 i---~~~---~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
. ..+ .....+.++.+.+++ .+|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 2 222 234455667777643 689999999999999999887 66778889999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
||.|++||+++...+..+. .|...+.+++|+|++++|++++.|+.|++||+++........ ....+.+++|+|
T Consensus 162 dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCP 234 (337)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECT
T ss_pred CCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECC
Confidence 9999999999998877765 488899999999999999999999999999998876554322 245688899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++|++++.+|.|++||+.+++.. .+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEE
Confidence 9999999999999999999988764 5778999999999999 778999999999999996
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-32 Score=294.04 Aligned_cols=283 Identities=23% Similarity=0.415 Sum_probs=245.5
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007431 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
...+++.++.+|...|++++|+ +.+|++|+.||+|++||+ .+++++..+.+|...|.++.|+ ++.|++|+.||.
T Consensus 147 ~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 220 (445)
T 2ovr_B 147 VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNA-ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT 220 (445)
T ss_dssp TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEEC-CcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence 3456788999999999999997 469999999999999999 6889999999999999999995 568999999999
Q ss_pred EEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007431 381 IKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
|++||+.+++.+..+..+.. ..++.+ + +.++++|+.||.|++||+++++.+..+.+|...|.++.| ++.+++
T Consensus 221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 293 (445)
T 2ovr_B 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--D---GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVV 293 (445)
T ss_dssp EEEEESSSCCEEEEEECCSSCEEEEEE--C---SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEE
T ss_pred EEEEECCCCcEEEEEcCCcccEEEEEE--C---CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEE
Confidence 99999999999988865433 334444 2 367999999999999999999999999999999999999 788999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+++.||.|++||++++..+..+. .|...+.++.+ ++++|++++.||.|++||+.++..+........| ...+.++
T Consensus 294 ~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~ 368 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH--QSAVTCL 368 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC--SSCEEEE
T ss_pred EEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC--CCCEEEE
Confidence 99999999999999998887775 57777777776 5779999999999999999887665444433334 5678888
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-----ecCCCcEEEEEEecCCCCEEEEEeCCCc----EEEeC
Q 007431 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-----KCHEGVCIGCEWHPLEQSKVATCGWDGL----IKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l-----~~h~~~V~~v~~sp~~~~~l~tgg~DG~----I~vWD 604 (604)
+|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+| ++.+|++|+.||+ |.|||
T Consensus 369 ~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 369 QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEE
T ss_pred EEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEE
Confidence 885 689999999999999999999999988 46888999999999 7889999999998 99997
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-32 Score=292.01 Aligned_cols=243 Identities=21% Similarity=0.419 Sum_probs=211.4
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
+...|++++|+|+ +++|++|+.|++|+|||+ .+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++++
T Consensus 122 ~~~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 122 SDLYIRSVCFSPD-GKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CCCBEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CceeEEEEEECCC-CCEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 3345999999999 999999999999999999 68889999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-------cCcCCceeEEEEeCCCCEEEEEeCC
Q 007431 392 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------DQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-------~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
...+........+.+.+. ++.+|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.|
T Consensus 200 ~~~~~~~~~v~~~~~~~~--~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp EEEEECSSCEEEEEECST--TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 988887777778888773 3478999999999999999999888776 5799999999999999999999999
Q ss_pred CcEEEEECCCCe------------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007431 465 KSLRVWEFGIPV------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 465 g~I~iwdl~~~~------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
+.|++||++... +...+ ..|...|.+++++|++.+|++++.|+.|++||+.++..+ ..+.+|
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~---~~l~~h-- 351 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL---LMLQGH-- 351 (393)
T ss_dssp SEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE---EEEECC--
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEECCC--
Confidence 999999997532 22222 368889999999999999999999999999999887654 345566
Q ss_pred ccceEEEEEcC------CCCEEEEEcCCCcEEEEeCCC
Q 007431 533 AGYACQVNFSP------DGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 533 ~~~v~~l~~sp------dg~~L~sgs~dG~I~iwd~~t 564 (604)
...|.+++|++ ++++|++|+.||.|+||++..
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 46688899876 688999999999999999754
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-34 Score=294.06 Aligned_cols=252 Identities=20% Similarity=0.353 Sum_probs=203.1
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-eeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcEEE
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 383 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~v 383 (604)
..+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.... .++..+.+|...|.+++|++ ++++|++|+.|++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 356799999999999999 9999999999999999994332 35678999999999999986 4889999999999999
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--CCEEEEE
Q 007431 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTS 461 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~--~~~l~sg 461 (604)
||++++.. ..+..+.+|...|++++|+|+ +.+|+++
T Consensus 86 Wd~~~~~~------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 86 WREENGTW------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSSCC------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EECCCCcc------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 99875421 122345679999999999998 7899999
Q ss_pred eCCCcEEEEECCCCeEE--EEeecCCCCcccEEEEcCC-----------------CCEEEEEEcCCeEEEEEcCCceeec
Q 007431 462 SDDKSLRVWEFGIPVVI--KYISEPHMHSMPSISLHPN-----------------TNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~~--~~~~~~~~~~v~~l~~sp~-----------------g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+.|++|++||++..... ......|...+.+++|+|+ +++|++++.|+.|++||+.......
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence 99999999999876322 3334568888999999997 4789999999999999997543222
Q ss_pred ccccccCcccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCCC---e-eEEEEecCCCcEEEEEEecCCCCEEEEE
Q 007431 523 KKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC---K-VFRTLKCHEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg----~~L~sgs~dG~I~iwd~~t~---~-~~~~l~~h~~~V~~v~~sp~~~~~l~tg 594 (604)
....+.+| ...|.+++|+|++ .+|++|+.||+|+||++.+. . ....+..|...|.+++|+| ++.+|+++
T Consensus 204 ~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~ 280 (316)
T 3bg1_A 204 EEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVS 280 (316)
T ss_dssp EEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEE
T ss_pred eeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEE
Confidence 34456677 5679999999987 89999999999999998762 1 2344567899999999999 77899999
Q ss_pred eCCCcEEEeC
Q 007431 595 GWDGLIKYWD 604 (604)
Q Consensus 595 g~DG~I~vWD 604 (604)
+.||.|+|||
T Consensus 281 ~~D~~v~lw~ 290 (316)
T 3bg1_A 281 GGDNKVTLWK 290 (316)
T ss_dssp ESSSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999996
No 64
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=287.82 Aligned_cols=292 Identities=19% Similarity=0.323 Sum_probs=226.9
Q ss_pred ccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 007431 264 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 343 (604)
Q Consensus 264 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~ 343 (604)
..+.+...+..+...|...|.|-...... ........+|...|++++|+|+ +.+|++|+.|++|+||++
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKK 90 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEc
Confidence 34556666777888899999995432210 0011234689999999999999 999999999999999998
Q ss_pred CCCC-eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEeeC-CCcceEEEEccCCCCCcEEEE
Q 007431 344 VNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFST-GKIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 344 ~~~~-~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~---i~~~~~-~~~~~~~~~~~~~~~~~~lvs 418 (604)
.... .++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++.. +..+.. ...+..+.|+|++ .+|++
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s 167 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ---ELLAS 167 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS---SCEEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC---CEEEE
Confidence 4322 56788999999999999999999999999999999999987643 344433 2345667777754 67999
Q ss_pred EEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC---------------eEEEEe
Q 007431 419 GMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP---------------VVIKYI 481 (604)
Q Consensus 419 g~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~---------------~~~~~~ 481 (604)
|+.|+.|++||++++. ....+.+|...|.+++|+|++++|++++.|++|++|+...+ .++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999998875 45678899999999999999999999999999999996321 233344
Q ss_pred ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc------cccccCcccccceEEEEEcCCC-CEEEEEcCC
Q 007431 482 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRFAGHIVAGYACQVNFSPDG-RFVMSGDGE 554 (604)
Q Consensus 482 ~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~v~~l~~spdg-~~L~sgs~d 554 (604)
...|...|.+++|+|++..|++++.|+.|++|+......... .....+| ...|.+++|+|++ .+|++|+.|
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEEEECSSSTTEEEEEETT
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEeEEeCCCceEEEEcCCC
Confidence 444788899999999999999999999999999875432111 1122345 5679999999998 599999999
Q ss_pred CcEEEEeCCCCeeEEEE
Q 007431 555 GKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l 571 (604)
|.|++|++.+.+.+..+
T Consensus 326 g~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 326 GEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SCEEEEEECC-------
T ss_pred CcEEEEEecCCCCcccc
Confidence 99999999988766544
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=284.87 Aligned_cols=275 Identities=20% Similarity=0.317 Sum_probs=212.0
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEe-cC-CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC----
Q 007431 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---- 345 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl-~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---- 345 (604)
+..+...|...|.|-.... ...++.++ .+ |...|++|+|+|+ +.+|++|+.|++|+||++..
T Consensus 26 ~las~~~D~~i~lw~~~~~-----------~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD-----------DFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp EEEEEESSSCEEEEECSSS-----------CCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC------
T ss_pred EEEEEcCCCEEEEEEecCC-----------CeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCc
Confidence 5566778888888865321 12345566 45 9999999999999 89999999999999999832
Q ss_pred --CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC----cEEEEeeCC-CcceEEEEccCCCCCcEEEE
Q 007431 346 --SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTG-KIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 346 --~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~----~~i~~~~~~-~~~~~~~~~~~~~~~~~lvs 418 (604)
...++..+.+|...|++++|+|++++|++|+.|++|++||+... +++..+..+ ..+.++.|+|++ .+|++
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s 170 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE---ALLAS 170 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS---SEEEE
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC---CEEEE
Confidence 23567888999999999999999999999999999999999432 455555543 345677777753 68999
Q ss_pred EEcCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC--------eEEEEeecCCC
Q 007431 419 GMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP--------VVIKYISEPHM 486 (604)
Q Consensus 419 g~~dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~sp~--~~~l~sgs~Dg~I~iwdl~~~--------~~~~~~~~~~~ 486 (604)
|+.|+.|++||+.++ +++..+.+|.+.|.++.|+|+ +.+|++++.|++|++||+... .....+...|.
T Consensus 171 ~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999999876 678889999999999999998 678999999999999998653 33344444488
Q ss_pred CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc-ceEEEEEcC--CCCEEEEEcCCCcEEEEeCC
Q 007431 487 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSP--DGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp--dg~~L~sgs~dG~I~iwd~~ 563 (604)
..|.+++|++++ +|++++.|+.|++|+..++..........+| .. .+.+++|+| ++++|++|+.||.|+|||+.
T Consensus 251 ~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 251 RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc--ccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 899999999765 8999999999999998765321111222344 33 688999999 78999999999999999986
Q ss_pred C
Q 007431 564 S 564 (604)
Q Consensus 564 t 564 (604)
.
T Consensus 328 ~ 328 (330)
T 2hes_X 328 K 328 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.9e-33 Score=295.85 Aligned_cols=279 Identities=15% Similarity=0.296 Sum_probs=221.0
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe-----------eeEEecCCC------------CceeeEEEcc
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----------CMRTYMGHS------------KAVRDISFCN 367 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-----------~~~~~~~h~------------~~V~~l~fsp 367 (604)
.|.+.|++|+|+|+ +.+|++|+.||.|+||++. .+. +...+.+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46789999999999 9999999999999999994 443 578889998 8899999999
Q ss_pred CC--CEEEEEECCCcEEEEECCCCcEE---------------------------------------EEee--CCCcceEE
Q 007431 368 DG--TKFLTASYDKNIKYWDTETGQVI---------------------------------------RTFS--TGKIPYVV 404 (604)
Q Consensus 368 dg--~~L~s~s~Dg~I~vWD~~t~~~i---------------------------------------~~~~--~~~~~~~~ 404 (604)
++ .+|++++.|+.|++||+.++... ..+. ....+.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999875442 1222 23345677
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEE-------EcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Q 007431 405 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE-------YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP 475 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~-------~~~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~ 475 (604)
.|++++ .+|++| .|+.|++||+++ +..+.. +..|...|++++|+|++ ++|++++.||.|++||+++.
T Consensus 184 ~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 184 SINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 777743 678888 899999999994 444442 45799999999999998 99999999999999999987
Q ss_pred eE----EEEeecCCCC------------cccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCccccc----
Q 007431 476 VV----IKYISEPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAG---- 534 (604)
Q Consensus 476 ~~----~~~~~~~~~~------------~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---- 534 (604)
.. ...+. .+.. .|.+++|+|++++|++++. +.|++||++. +..+ ..+.+|....
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---ETYQVHEYLRSKLC 334 (447)
T ss_dssp SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---CCEESCGGGTTTHH
T ss_pred ccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---ceeecccccccccc
Confidence 75 44443 3443 8999999999999999998 9999999986 4433 3344442111
Q ss_pred ---------ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------------------------------
Q 007431 535 ---------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------------- 574 (604)
Q Consensus 535 ---------~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h------------------------------- 574 (604)
.+..++|+|++++|++|+.||.|++||+.+++.+. +.+|
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccc
Confidence 12348999999999999999999999999988763 3333
Q ss_pred --CCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 575 --EGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 575 --~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
...|..++|+| ++.+|++++.++ +.+|
T Consensus 414 ~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 414 DFNKKILHTAWHP-KENIIAVATTNN-LYIF 442 (447)
T ss_dssp CTTSCCCEEEECS-SSSEEEEECSSC-EEEE
T ss_pred ccCCceeEEEECC-CCCEEEEEecce-eeee
Confidence 34688999999 778999988776 5555
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-32 Score=332.54 Aligned_cols=300 Identities=19% Similarity=0.291 Sum_probs=255.9
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc--CCCEEEEE
Q 007431 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTA 375 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~L~s~ 375 (604)
|+....+.+.++.+|...|++++|+|+ +.+|++|+.||+|+|||+ .+++++..+.+|...|.+++|+| ++.++++|
T Consensus 642 w~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg 719 (1249)
T 3sfz_A 642 FKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719 (1249)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred EECCCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEE
Confidence 344455788999999999999999999 899999999999999999 68899999999999999999999 56689999
Q ss_pred ECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---------------
Q 007431 376 SYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--------------- 439 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~--------------- 439 (604)
+.|+.|++||+.+++++..+..+ ..+.++.+++++ .++++|+.||.|++||++++.....+
T Consensus 720 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 720 SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 99999999999999999887654 345567777744 68999999999999998776543332
Q ss_pred ----------------------------------------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 007431 440 ----------------------------------------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 479 (604)
Q Consensus 440 ----------------------------------------~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~ 479 (604)
.+|...|.+++|+|+++++++++.||.|++||+.++..+.
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~ 876 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence 2678889999999999999999999999999999998887
Q ss_pred EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc--------------------------ccc---c--
Q 007431 480 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK--------------------------KRF---A-- 528 (604)
Q Consensus 480 ~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~--------------------------~~~---~-- 528 (604)
.+. .|...|.+++|+|++++|++++.|+.|++|++......... ... .
T Consensus 877 ~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 877 DCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp EEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred ecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence 765 68999999999999999999999999999997542110000 000 0
Q ss_pred -CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 529 -GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 529 -~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.......+.+++|+|+|+++++|+.+|.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEE
T ss_pred EEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEE
Confidence 001134578899999999999999999999999999999999999999999999999 778999999999999996
No 68
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=319.68 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=158.5
Q ss_pred CCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 007431 261 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 340 (604)
Q Consensus 261 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~I 340 (604)
.....+.+...+.+....|..+|.|-... .+++.. ..|...|++|+|+| +++|++++.|++|+|
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~-------------~~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQ-------------VEVVIK-LEDRSAIKEMRFVK--GIYLVVINAKDTVYV 83 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTT-------------CEEEEE-CSSCCCEEEEEEET--TTEEEEEETTCEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------cEEEEE-cCCCCCEEEEEEcC--CCEEEEEECcCeEEE
Confidence 33445666666777788888889884321 122333 35889999999999 469999999999999
Q ss_pred EecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-e----------e-CCCcceEEEEcc
Q 007431 341 WDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-F----------S-TGKIPYVVKLNP 408 (604)
Q Consensus 341 Wd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~-~----------~-~~~~~~~~~~~~ 408 (604)
||+ .+++++..+. |...|++++|+|++++|++|+.||.|++||+.++++... + . ....+.++.|+|
T Consensus 84 Wd~-~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 84 LSL-YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EET-TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEC-CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 999 5778888875 778999999999999999999999999999998876411 1 1 123566788877
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc------------------CCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007431 409 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH------------------LGAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h------------------~~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
.+ ...+++|+.||.| +||+++++.+..+..| ...|++++|+|++.+|++++.||+|++|
T Consensus 162 ~~--~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 162 RD--IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TE--EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CC--CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 43 3679999999999 9999999998888766 4779999999999999999999999999
Q ss_pred ECCCCeEE
Q 007431 471 EFGIPVVI 478 (604)
Q Consensus 471 dl~~~~~~ 478 (604)
|+++++.+
T Consensus 239 d~~~g~~~ 246 (902)
T 2oaj_A 239 DANSGHMI 246 (902)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99765543
No 69
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=294.54 Aligned_cols=273 Identities=25% Similarity=0.482 Sum_probs=236.0
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
....+|...|+|+.| + +.+|++|+.||.|++||+ .+++++..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 127 ~~~~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp ECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ecccCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 344578889999987 4 789999999999999999 688899999999999999999 7889999999999999999
Q ss_pred CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE---EEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 387 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT---QEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 387 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~---~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
.+++.+..+..+. ..+.++..++ ..+++|+.||.|++||+.++... ..+.+|...|.++.| ++++|++++.
T Consensus 201 ~~~~~~~~~~~h~-~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHC-EAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCC-SCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCC-CcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999998886543 3344444432 58999999999999999987654 677899999999999 6789999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
||.|++||++++..+..+. .|...|.++.+ ++.+|++++.||.|++||++++..+. .+.+| ...+.+++|
T Consensus 275 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h--~~~v~~~~~-- 344 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGH--EELVRCIRF-- 344 (435)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE---EECCC--SSCEEEEEC--
T ss_pred CCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE---EEeCC--cCcEEEEEe--
Confidence 9999999999998888775 58888999988 47899999999999999999876553 34455 456778888
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCe---------eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 544 DGRFVMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++.+|++|+.||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||.|++||
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEE
Confidence 78999999999999999997766 88999999999999999 356899999999999997
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.7e-32 Score=289.81 Aligned_cols=274 Identities=24% Similarity=0.479 Sum_probs=236.8
Q ss_pred eeEEecCCCCCe-EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 305 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 305 ~i~tl~gH~~~V-~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
..+.+.+|.+.| +|+.+ + +++|++|+.||+|++||+ .+++++..+.+|...|.+++|+ +++|++|+.||.|++
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEEC-CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 456789999875 55554 5 789999999999999999 6888999999999999999997 669999999999999
Q ss_pred EECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007431 384 WDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
||+.+++.+..+..+.. +.++.+ + +..+++|+.||.|++||+.+++.+..+.+|...|.++.+ ++.+|++++
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~--~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHL--H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EECCcCcEEEEECCCCCcEEEEEe--c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 99999999988865433 334444 2 257999999999999999999999999999999999999 788999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007431 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
.||.|++||++++..+..+. .|...+.++.+ ++.+|++++.|+.|++||++++..+. .+.+| ...+.++.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~~v~~~~~- 327 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH--QSLTSGMEL- 327 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC--CSCEEEEEE-
T ss_pred CCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC--cccEEEEEE-
Confidence 99999999999998887775 58889999998 78999999999999999998876553 33444 345555555
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 543 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++|++|+.||.|++||+.+++++..+.. |...|.+++|++ .+|++|+.||.|++||
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD 388 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEE
Confidence 577999999999999999999999999986 888999999964 6999999999999997
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=313.28 Aligned_cols=314 Identities=11% Similarity=0.043 Sum_probs=225.5
Q ss_pred eccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCC-----CCCEEEEEECCCcEEEEecCCCC
Q 007431 273 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-----YGHLILSAGMDTKVKIWDVVNSG 347 (604)
Q Consensus 273 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~-----~g~~L~sgs~Dg~I~IWd~~~~~ 347 (604)
..+...|..+|.|-...... ......++.+|.+.|.+|+|+|+ .+.+||+|+.||+|+|||+....
T Consensus 176 laS~s~D~tI~iWd~~~~~~---------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTL---------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------CEEEEEEEEETTTC---------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hccCCCCceEEEEEccCCCC---------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 36667888899997543211 11234567789999999999996 25799999999999999994321
Q ss_pred ----------eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE-EEEeeCC-CcceEEEEccCCCCCcE
Q 007431 348 ----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 348 ----------~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~-i~~~~~~-~~~~~~~~~~~~~~~~~ 415 (604)
.+..++.+|...|++++|+++ ..|++|+.||+|++||++++.. ...+..+ ..+..+.+...+....+
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeE
Confidence 123578899999999999986 4899999999999999997743 3344433 23344422222222278
Q ss_pred EEEEEcCCeEEEEeCCCCceEEEEcCcCC--ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEE
Q 007431 416 LLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s~~~~~~~~~h~~--~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
|++|+.|++|++||+++++.+..+.+|.. .|.+++|+|+++.|++++.|++|++||++...++..+. .|...|.+++
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva 404 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIG 404 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEE
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEE
Confidence 99999999999999999877666666653 58899999999999999999999999999987766655 4899999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-CCeeEE
Q 007431 494 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-SCKVFR 569 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~-t~~~~~ 569 (604)
|+|++++|++|+.|++|++|++..+ .+ ..+... .....+.+++|+|+|..+. ... .+.+|++. ++.++.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKA 477 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCccee
Confidence 9999999999999999999998543 11 111110 0112466899999998653 222 34455443 577888
Q ss_pred EEecCCCcEEEEEEecCC--CCEEEEEeCCCcEEEeC
Q 007431 570 TLKCHEGVCIGCEWHPLE--QSKVATCGWDGLIKYWD 604 (604)
Q Consensus 570 ~l~~h~~~V~~v~~sp~~--~~~l~tgg~DG~I~vWD 604 (604)
.+.+|...|.+|+|+|+. +..|++|+.||.|+||+
T Consensus 478 ~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 478 KIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 899999999999999953 35899999999999995
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.6e-32 Score=302.84 Aligned_cols=288 Identities=16% Similarity=0.223 Sum_probs=248.5
Q ss_pred ceeEEecCCCCC-eEEEEEcC--CCCCEEEEEECCCcEEEEecCC-------CCeeeEEecCCCCceeeEEEccCCCEEE
Q 007431 304 RLVHTWSGHTKG-VSAIRFFP--KYGHLILSAGMDTKVKIWDVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFL 373 (604)
Q Consensus 304 ~~i~tl~gH~~~-V~~l~fsp--~~g~~L~sgs~Dg~I~IWd~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~L~ 373 (604)
+.+..+.+|... |++++|+| + +.+|++|+.||.|+|||+.. ....+..+..|...|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 678899999999 99999999 8 99999999999999999932 2477788889999999999999999999
Q ss_pred EEECC----CcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC---c
Q 007431 374 TASYD----KNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---A 445 (604)
Q Consensus 374 s~s~D----g~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~---~ 445 (604)
+++.+ +.|.+|| +++.+..+..+ ..+.++.|.+++ ..++++++.|+.|++||+.+++.+..+..|.. .
T Consensus 133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208 (615)
T ss_dssp EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence 99988 6888887 56677776543 334566666643 35899999999999999999999999999999 9
Q ss_pred eeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeec---CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007431 446 VNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 446 V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
|.+++|+|+ +++|++++.||.|++||+.++..+..+.. .|...|.+++|+ ++.+|++++.|+.|++||+.++..+
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 999999999 99999999999999999999998888844 788999999999 9999999999999999999987665
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007431 522 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
....... ......+..+.|+ ++.+|++|+.+|.|++||+.+++++..+.+|...|.+++| | + |++++.||.|+
T Consensus 288 ~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 288 QKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIM 360 (615)
T ss_dssp EEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEE
T ss_pred EEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEE
Confidence 4433221 1123556677775 8999999999999999999999999999999999999999 8 3 88888888888
Q ss_pred EeC
Q 007431 602 YWD 604 (604)
Q Consensus 602 vWD 604 (604)
+||
T Consensus 361 ~w~ 363 (615)
T 1pgu_A 361 EWS 363 (615)
T ss_dssp ETT
T ss_pred EEE
Confidence 886
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-32 Score=281.80 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=217.0
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC---eeeEEecCCCCceeeEEEcc--CCCEEEEEECCC
Q 007431 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDK 379 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~---~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg 379 (604)
+.+.+.+|.+.|++|+|+|+ +.+|++|+.||.|+||++.... +.+..+.+|...|++++|+| ++++|++++.||
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 44567899999999999999 9999999999999999994322 56778889999999999999 699999999999
Q ss_pred cEEEEECCCC---------cEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---------
Q 007431 380 NIKYWDTETG---------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--------- 440 (604)
Q Consensus 380 ~I~vWD~~t~---------~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--------- 440 (604)
.|++||+.++ +.+..+.. ...+..+.+.+.. .+.+|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 9999999987 44555543 3445667777651 13789999999999999998876433322
Q ss_pred ----CcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCCcccEEEEcCCC----CEEEEEEcCC
Q 007431 441 ----QHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDN 508 (604)
Q Consensus 441 ----~h~~~V~~i~~sp~---~~~l~sgs~Dg~I~iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g----~~l~s~s~Dg 508 (604)
.|...+.++.|+|+ +..|++++.++.+.+|+....... ......|...|.+++|+|++ ++|++++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 57889999999997 899999999999988888776542 22234688899999999998 8999999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEe
Q 007431 509 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 509 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg----s~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
.|++||++......... .. .........++....+..+ .....+.+|+....+++..+.+|...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASE---ES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccC---Cc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 99999998653322111 11 1112223333444444333 345567777777888999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 007431 585 PLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~vWD 604 (604)
| ++.+|++|+.||.|+|||
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEE
T ss_pred C-CCCEEEEecCCCcEEEEe
Confidence 9 678999999999999996
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.5e-33 Score=290.79 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=198.2
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC------CCcEEEEECCCCcEE
Q 007431 319 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVI 392 (604)
Q Consensus 319 l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~------Dg~I~vWD~~t~~~i 392 (604)
+.+.+. .+++.++.+.....|++. .. ...+|...|++++|+|||++|++|+. |+.|++|+..++...
T Consensus 11 ~d~g~~--~~~~~~~g~~~~~~w~~p-~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 11 VDLGTE--NLYFQSNGSSKGSAWGRP-VT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred CCCCcc--ceEEecCCCccccccCCC-CC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 334444 455666667888999982 22 23579999999999999999999997 788999998876543
Q ss_pred E-----EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE----EEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 393 R-----TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT----QEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 393 ~-----~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~----~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
. .......+.+++|.+++ .+++++.||.|++||+.+++.. ....+|...|++++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred eeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 2 22334456778887753 4778899999999999887643 234579999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007431 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
|+.|++||++++..+..+. .|...|.+++|+|++. +|++++.|+.|++||++++...... ..+.....+.+++|+
T Consensus 160 dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASDTIPTSVTWH 235 (357)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCCSCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eeccccccccchhhh
Confidence 9999999999998887775 5889999999999875 7899999999999999876544322 222235678899999
Q ss_pred CC-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 543 PD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 pd-g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++..+|++|+.||+|+|||
T Consensus 236 p~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred hcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 97 568999999999999999999999999999999999999997667899999999999998
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=284.44 Aligned_cols=260 Identities=20% Similarity=0.339 Sum_probs=213.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCeeeEEecCCCCceeeEEEccC--CCEEEEEECCCc
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKN 380 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~L~s~s~Dg~ 380 (604)
+++.++.+|.+.|++++|+|+ +.+|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 456788999999999999999 99999999999999999932 45777889999999999999976 999999999999
Q ss_pred EEEEECCCCc--EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeC--
Q 007431 381 IKYWDTETGQ--VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD-- 453 (604)
Q Consensus 381 I~vWD~~t~~--~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~sp-- 453 (604)
|++||+.+++ .+..+.. ...+.++.+.++. .+.+|++++.|+.|++||++++ .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999999987 5555543 3456677777652 1378999999999999999887 34556778999999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCC---CCEEEEEEcCCeEEEEEcC
Q 007431 454 -----------SNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 454 -----------~~~~l~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~---g~~l~s~s~Dg~I~iwd~~ 516 (604)
++.+|++++.||.|++||++.... .......|...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 699999999999999999976532 22333468899999999999 8999999999999999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
...................+.+++|+|+|++|++++.||.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7532222222222223567899999999999999999999999998754
No 76
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-31 Score=273.36 Aligned_cols=295 Identities=18% Similarity=0.327 Sum_probs=242.0
Q ss_pred ccCCCCCCccccCc-ceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEEC
Q 007431 256 GNAGGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 334 (604)
Q Consensus 256 ~~~~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~ 334 (604)
++.+......+.+. ..+..+...|..+|.|-...... ....+.+++.+|...|++++|+|+ +.+|++|+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~ 106 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------NYGIPQRALRGHSHFVSDVVISSD-GQFALSGSW 106 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEET
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEcc
Confidence 45555555566654 46778888999999996643321 123467889999999999999999 999999999
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC--cceEEEEccCCCC
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDK 412 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~--~~~~~~~~~~~~~ 412 (604)
|+.|++|+. ...........+...+..+.+++++.+|++++.|+.+++||+............+ ....+.+.+...
T Consensus 107 d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 184 (340)
T 4aow_A 107 DGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS- 184 (340)
T ss_dssp TSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS-
T ss_pred cccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC-
Confidence 999999999 6777778888899999999999999999999999999999998776655544433 345566666543
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEE
Q 007431 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 492 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l 492 (604)
..++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.||.|++||++....+..+. +...+.++
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~ 262 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINAL 262 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEee
Confidence 3678899999999999999999999999999999999999999999999999999999999999888775 45689999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 493 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 493 ~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
+|+|++.++ +++.|+.|++||+++...+..... ..+| ...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE--PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC--CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999987654 566799999999987655433221 2233 5678999999999999999999999999999885
No 77
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-31 Score=272.65 Aligned_cols=251 Identities=22% Similarity=0.359 Sum_probs=218.6
Q ss_pred CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCe
Q 007431 346 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 346 ~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
......++.+|...|++++|+|++++|++++.||.|++|++.+++....+..+. .+..+.|.+++ .+|++|+.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS---NLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC---CEEEEECCCCE
Confidence 345677889999999999999999999999999999999999999888876543 45567777643 78999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007431 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
|++||+++++.+..+.+|...|.++.|+|++++|++++.|+.|++||++++..+..+. .|...|.+++|+|++++|+++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999988877764 588899999999999999999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE--EEEE
Q 007431 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC--IGCE 582 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V--~~v~ 582 (604)
+.|+.|++||++++..+.... ..+ ...+..++|+|++++|++++.||.|++||+.+++++..+.+|...+ ....
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLI--DDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEEC--CSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred eCCCcEEEEECCCCceeeEEe--ccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 999999999998875543321 112 3567889999999999999999999999999999999999887643 3345
Q ss_pred EecCCCCEEEEEeCCCcEEEeC
Q 007431 583 WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 ~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+++.++.+|++|+.||.|++||
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEE
T ss_pred EEeCCCcEEEEECCCCEEEEEE
Confidence 6655788999999999999997
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=320.73 Aligned_cols=331 Identities=10% Similarity=0.095 Sum_probs=239.1
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCc--ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 007431 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPK--RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 342 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~--~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd 342 (604)
.+.+...+......|...|.|-......... .++. .....+.+|.+.|++|+|+|+++.+|++|+.||.| |||
T Consensus 105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~----~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 105 DTDASLDWMLIGLQNGSMIVYDIDRDQLSSF----KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp ECCTTCSEEEEEETTSCEEEEETTTTEEEEE----EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCccccc----eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 3444445556666788888886543321000 0000 00034578999999999999756899999999999 999
Q ss_pred cCCCCeeeEEecCC------------------CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE--ee----C-
Q 007431 343 VVNSGKCMRTYMGH------------------SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FS----T- 397 (604)
Q Consensus 343 ~~~~~~~~~~~~~h------------------~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~--~~----~- 397 (604)
+ ..+++++.+..| ...|++++|+|+|.+|++++.||.|++||+.+++++.. +. .
T Consensus 180 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~ 258 (902)
T 2oaj_A 180 L-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV 258 (902)
T ss_dssp T-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS
T ss_pred C-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC
Confidence 9 678888888766 57799999999999999999999999999999887653 21 0
Q ss_pred ------------CCcceEEEEccCC--C----------------------------------------------------
Q 007431 398 ------------GKIPYVVKLNPDD--D---------------------------------------------------- 411 (604)
Q Consensus 398 ------------~~~~~~~~~~~~~--~---------------------------------------------------- 411 (604)
...+..++|.+.. +
T Consensus 259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (902)
T 2oaj_A 259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP 338 (902)
T ss_dssp CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence 0112333332210 0
Q ss_pred ------------------------CCcEEEEEEcCCeEEEEeCCCCceEEE-----------------------------
Q 007431 412 ------------------------KQNILLAGMSDKKIVQWDMNTKEITQE----------------------------- 438 (604)
Q Consensus 412 ------------------------~~~~lvsg~~dg~I~iwD~~s~~~~~~----------------------------- 438 (604)
+...+++++.|+.|++||+.++.....
T Consensus 339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~ 418 (902)
T 2oaj_A 339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL 418 (902)
T ss_dssp CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence 011455556677788888766543221
Q ss_pred ------------EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEE----EEee------cCCCCcccEEEEcC
Q 007431 439 ------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI----KYIS------EPHMHSMPSISLHP 496 (604)
Q Consensus 439 ------------~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~----~~~~------~~~~~~v~~l~~sp 496 (604)
+.+|...+.+++|+|++++|++|+.|++|++||+..+... .... ..|...|.+++|+|
T Consensus 419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp 498 (902)
T 2oaj_A 419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498 (902)
T ss_dssp HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence 1223334444555788999999999999999999765311 1111 15778999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceee------------------------------------------cccccccCccccc
Q 007431 497 NTNWLAAQSLDNQILIYSTRERFQL------------------------------------------NKKKRFAGHIVAG 534 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~~~~~------------------------------------------~~~~~~~~~~~~~ 534 (604)
++++||+|+.||+|+||++.+.... .....+.+| .+
T Consensus 499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h--~~ 576 (902)
T 2oaj_A 499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN--KG 576 (902)
T ss_dssp TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--SC
T ss_pred CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC--CC
Confidence 9999999999999999998765210 112344555 57
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE-----Ee-cCCCcEEEEEEe-----cCC--CCEEEEEeCCCcEE
Q 007431 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-----LK-CHEGVCIGCEWH-----PLE--QSKVATCGWDGLIK 601 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~-----l~-~h~~~V~~v~~s-----p~~--~~~l~tgg~DG~I~ 601 (604)
.|++++||||| +||+|+.||+|+|||+.++..+.. +. +|.+.|++++|+ |++ +.+|++|+.||+|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 89999999999 999999999999999988877642 22 788899999999 843 47999999999999
Q ss_pred EeC
Q 007431 602 YWD 604 (604)
Q Consensus 602 vWD 604 (604)
+||
T Consensus 656 ~wd 658 (902)
T 2oaj_A 656 TYK 658 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.5e-32 Score=276.87 Aligned_cols=251 Identities=20% Similarity=0.287 Sum_probs=203.9
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEE
Q 007431 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~--~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
+..+.+|...|++++|+|+|++|++|+.|++|+|||+..+ +++..+..+. .+.++.|.+.. .+.+|++|+.|+.|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEE
Confidence 3457799999999999999999999999999999999753 5666665433 34566665421 247899999999999
Q ss_pred EEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcCC----
Q 007431 427 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPN---- 497 (604)
Q Consensus 427 iwD~~s~~--~~~~~~~h~~~V~~i~~sp~--~~~l~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp~---- 497 (604)
+||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 56678889999999999997 88999999999999999986532 12233468889999999997
Q ss_pred ---------CCEEEEEEcCCeEEEEEcCCcee-ecccccccCcccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCC
Q 007431 498 ---------TNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 498 ---------g~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg---~~L~sgs~dG~I~iwd~~t 564 (604)
+++|++++.|+.|++||+++... ......+.+| ...|.+++|+|++ .+|++|+.||.|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 57999999999999999976532 1123456666 5679999999985 8999999999999999977
Q ss_pred Ce--e-EEEE--ecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 565 CK--V-FRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 565 ~~--~-~~~l--~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.. . ...+ ..|...|.+++|+| ++.+|++++.||.|+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 43 1 2233 46788999999999 778999999999999995
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-31 Score=305.21 Aligned_cols=280 Identities=20% Similarity=0.366 Sum_probs=229.6
Q ss_pred ceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee
Q 007431 270 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 349 (604)
Q Consensus 270 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~ 349 (604)
..+..+...|..+|.|-...... ......+.+.+|...|++++|+|+ +++|++|+.||+|+|||+ ..+.+
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~-~~~~~ 464 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDK--------AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDL-AAGVS 464 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTT--------CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred CCEEEEEeCCCcEEEEEccCCCc--------ccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCcc
Confidence 45667788899999996543211 123456789999999999999999 999999999999999999 68889
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC--C--CcceEEEEccCCCCCcEEEEEEcCCeE
Q 007431 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--G--KIPYVVKLNPDDDKQNILLAGMSDKKI 425 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~--~--~~~~~~~~~~~~~~~~~lvsg~~dg~I 425 (604)
++.+.+|...|.+++|+|++++|++|+.|++|+|||+........... + ..+.++.++++.. ...+++|+.|+.|
T Consensus 465 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~v 543 (694)
T 3dm0_A 465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-QPTIVSASWDKTV 543 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS-SCEEEEEETTSCE
T ss_pred eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC-cceEEEEeCCCeE
Confidence 999999999999999999999999999999999999876544433321 2 2356677776542 3689999999999
Q ss_pred EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007431 426 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 426 ~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
++||++++++...+.+|.+.|++++|+|++++|++|+.||.|++||++++..+..+. +...+.+++|+|++.+|++++
T Consensus 544 ~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999998876653 456799999999998887765
Q ss_pred cCCeEEEEEcCCceeecccccccC--------------cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 506 LDNQILIYSTRERFQLNKKKRFAG--------------HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
++.|++||+.++..+........ ......+++++|||+|++|++|+.||.|+||++.
T Consensus 622 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 622 -EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 67799999988765543321100 0011246789999999999999999999999975
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-32 Score=291.20 Aligned_cols=282 Identities=19% Similarity=0.287 Sum_probs=229.9
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe---eeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCC-
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG- 389 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~---~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~- 389 (604)
....++++|+...++++++.||.|+||++...++ .+..+.+|...|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3556889988445566789999999999954443 4556789999999999999 9999999999999999999987
Q ss_pred ------cEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE--cCcCCceeEEEEeCCCCEEEE
Q 007431 390 ------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 390 ------~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~--~~h~~~V~~i~~sp~~~~l~s 460 (604)
+.+..+.. ...+.++.|++++ .++|++|+.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 45556653 3455677777754 368999999999999999999999999 889999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCc-ccEEEEcCCCCEEEEE---EcCCeEEEEEcCCceeecccccccCcccccce
Q 007431 461 SSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQ---SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~s~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
++.||.|++||++++..+..+...|... +.++.|+|++.+|+++ +.|+.|++||+++.........+ .+ ...+
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~--~~~v 270 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT--SSGV 270 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC--CSSC
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC--CCce
Confidence 9999999999999999888874456555 8999999999999999 68999999999875432212211 12 3568
Q ss_pred EEEEEcCCCCEEE-EEcCCCcEEEEeCCCCee-EEEEec--CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 537 CQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV-FRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 537 ~~l~~spdg~~L~-sgs~dG~I~iwd~~t~~~-~~~l~~--h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+| ++.++++ .++.+++|+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCGG--GTEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-cccccee--cceeEEEEE
Confidence 8899999999996 566899999999999874 555554 458999999999 5656654 567899995
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-30 Score=301.29 Aligned_cols=317 Identities=17% Similarity=0.273 Sum_probs=254.5
Q ss_pred CCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 007431 262 KGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 341 (604)
Q Consensus 262 ~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IW 341 (604)
....+.+...+......|...+.|.. ...+.+.++.+|...|++++|+|+ +.+|++|+.||.|+||
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNY-------------ETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEET-------------TTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEC-------------CCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence 33445555555555566666777743 234678899999999999999999 9999999999999999
Q ss_pred ecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEeeC-CCcceEEEEccCCCCCcEEEEE
Q 007431 342 DVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFST-GKIPYVVKLNPDDDKQNILLAG 419 (604)
Q Consensus 342 d~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~-~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg 419 (604)
++ .+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+.. ...+.++.|+|. ++..++++
T Consensus 83 ~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~ 159 (814)
T 3mkq_A 83 NY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASG 159 (814)
T ss_dssp ET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEEEEEEE
T ss_pred EC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCCEEEEE
Confidence 99 688889999999999999999999999999999999999999987 55555543 344567777762 23689999
Q ss_pred EcCCeEEEEeCCCCceEEEEcCcC-CceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC
Q 007431 420 MSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 420 ~~dg~I~iwD~~s~~~~~~~~~h~-~~V~~i~~sp--~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp 496 (604)
+.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.||.|++||+.++..+..+. .|...|.+++|+|
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHP 238 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcC
Confidence 999999999999887777776555 8999999999 99999999999999999999998877775 5888999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCCCee-------
Q 007431 497 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSCKV------- 567 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~L~sgs~dG~I~iwd~~t~~~------- 567 (604)
++.+|++++.||.|++||+.++..... +..+ ...+.+++|+|+|. ++++++ ++.+.+|++.....
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~---~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKT---LNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEE---ECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEE---eecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCC
Confidence 999999999999999999987655433 3333 35788999999987 455554 66788888654322
Q ss_pred ---EE---------------------------------EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 568 ---FR---------------------------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 568 ---~~---------------------------------~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+. .+..+...+.+++|+| ++.+|++++ ||.+.+|+
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEE
Confidence 11 1122344578899999 677888887 88999885
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-31 Score=277.33 Aligned_cols=284 Identities=10% Similarity=0.154 Sum_probs=232.4
Q ss_pred eeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCC---CC---CEEEEEECCCcEEEEecC
Q 007431 271 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK---YG---HLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 271 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~---~g---~~L~sgs~Dg~I~IWd~~ 344 (604)
.+......|...+.|-..... ...+..++..+.+|...|++++|+|+ ++ .+|++++.||.|++|++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~- 98 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD-------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI- 98 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT-------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE-
T ss_pred CeEEEEcCCCEEEEEECCCcc-------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc-
Confidence 455666778888888664332 12345678889999999999999997 46 89999999999999999
Q ss_pred CCCee-----eEEecCC-----CCceeeEEEc----cCCCE-EEEEECCCcEEEEECCC------CcEEE-----Eee--
Q 007431 345 NSGKC-----MRTYMGH-----SKAVRDISFC----NDGTK-FLTASYDKNIKYWDTET------GQVIR-----TFS-- 396 (604)
Q Consensus 345 ~~~~~-----~~~~~~h-----~~~V~~l~fs----pdg~~-L~s~s~Dg~I~vWD~~t------~~~i~-----~~~-- 396 (604)
..+.. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 45555 7888888 5999999999 99999 99999999999999998 65554 553
Q ss_pred ------CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC---c---CCceeEEEEeCCCCEEEEEeCC
Q 007431 397 ------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---H---LGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 397 ------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~---h---~~~V~~i~~sp~~~~l~sgs~D 464 (604)
....+.++.+.+++ ++++|+.|+.|++||+++++.+..+.. | ...|.+++|+|++++|++++.|
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred eccccCCCCCceEEEECCCc----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 24556677777743 899999999999999999999999998 9 9999999999999999999999
Q ss_pred ---CcEEEEECCCCeEEEEeecC------------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc-
Q 007431 465 ---KSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA- 528 (604)
Q Consensus 465 ---g~I~iwdl~~~~~~~~~~~~------------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~- 528 (604)
+.|++||+++...+..+..+ |...|.+++|+|++++|++++.|+.|++||+.+...+.......
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 334 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 334 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccC
Confidence 99999999999888777542 78899999999999999999999999999998876654443100
Q ss_pred --Cc-------------ccccceEEEEEcCCC----------CEEEEEcCCCcEEEEeCCCCe
Q 007431 529 --GH-------------IVAGYACQVNFSPDG----------RFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 529 --~~-------------~~~~~v~~l~~spdg----------~~L~sgs~dG~I~iwd~~t~~ 566 (604)
+| .+...|.+++|+|+| ++|++|+.||.|++|++.+|+
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 335 DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 22 014678999999998 799999999999999998764
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=2.7e-31 Score=275.50 Aligned_cols=246 Identities=15% Similarity=0.295 Sum_probs=208.0
Q ss_pred CCCCeEEEEEcCCC---CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECC
Q 007431 312 HTKGVSAIRFFPKY---GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 312 H~~~V~~l~fsp~~---g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~ 387 (604)
|...|++++|+|+. +.+|++|+.||.|+|||+ .+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 67889999999983 359999999999999999 67888999999999999999999 99999999999999999999
Q ss_pred CCcEEEEee----CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE------------------------
Q 007431 388 TGQVIRTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY------------------------ 439 (604)
Q Consensus 388 t~~~i~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~------------------------ 439 (604)
+++.+..+. ....+.++.+.+++ .+|++++.||.|++||+++++....+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLG---EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTS---SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cCeEEEEecccccccCceeEEEECCCC---CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999988873 34455667777643 68999999999999999987544333
Q ss_pred ----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE--------------EEEeecCCCCcccEEEEcCC--CC
Q 007431 440 ----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--------------IKYISEPHMHSMPSISLHPN--TN 499 (604)
Q Consensus 440 ----~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~--------------~~~~~~~~~~~v~~l~~sp~--g~ 499 (604)
..|...|.++.|+ +++|++++.|+.|++||++.... +..+ ..|...|.+++|+|+ ++
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCc
Confidence 3399999999998 77999999999999999976532 4443 357888999999999 99
Q ss_pred EEEEEEcCCeEEEEEcCCceeec-ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 500 WLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+|++++.||.|++||+.++.... ....+.+|.....|.+++|+|++++|++|+.||.|++||+.+
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999998765433 233455665467899999999999999999999999999853
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.7e-30 Score=266.91 Aligned_cols=278 Identities=20% Similarity=0.308 Sum_probs=233.3
Q ss_pred ccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 007431 264 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 343 (604)
Q Consensus 264 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~ 343 (604)
..+.+...+......|...+.|-. ...+.+.++.+|...|++++|+|+ +++|++++.||.|++||+
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~-------------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYS-------------LNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEET-------------TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeC-------------CCchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC
Confidence 344444445555666777777743 234678899999999999999998 899999999999999999
Q ss_pred CCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC-----CcEEEEECCCCcE-----------EEEeeC-CC--cceEE
Q 007431 344 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQV-----------IRTFST-GK--IPYVV 404 (604)
Q Consensus 344 ~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D-----g~I~vWD~~t~~~-----------i~~~~~-~~--~~~~~ 404 (604)
.+++++..+. |...|.+++|+|++++|++++.+ +.|++||+..+.. +..+.. .. ...++
T Consensus 104 -~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 104 -SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp -TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred -CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 6778888877 88999999999999999999999 9999999976542 112211 11 55667
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 007431 405 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~ 483 (604)
.+.+++ .+|++++.||.|++||+++ +..+..+..|...|.+++|+|++++|++++.|+.|++||+++...+..+.
T Consensus 182 ~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 182 GWSTKG---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EECGGG---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEcCCC---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 777644 6899999999999999999 78888999999999999999999999999999999999999998888875
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcCC--------------eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007431 484 PHMHSMPSISLHPNTNWLAAQSLDN--------------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 549 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l~s~s~Dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~ 549 (604)
+...+.+++|+|++.++++++.++ .|++||+.+...+. .+.+| ...|.+++|+|++++|+
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---RVQGH--FGPLNTVAISPQGTSYA 331 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE---EEECC--SSCEEEEEECTTSSEEE
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh---heecc--cCcEEEEEECCCCCEEE
Confidence 677899999999999999999988 89999998876553 34455 46788999999999999
Q ss_pred EEcCCCcEEEEeCCCCee
Q 007431 550 SGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 550 sgs~dG~I~iwd~~t~~~ 567 (604)
+++.||.|++|++.++..
T Consensus 332 s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEETTSEEEEEEECHHHH
T ss_pred EEcCCCeEEEEECccccc
Confidence 999999999999987554
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.7e-30 Score=276.63 Aligned_cols=281 Identities=14% Similarity=0.163 Sum_probs=228.3
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe---eeEEecC----------------------------------
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMG---------------------------------- 355 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~---~~~~~~~---------------------------------- 355 (604)
..+|++++|+|+ |++|+++ .++.|++||+ .+++ .+..+..
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKY-QSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEE-ETTTEEEEEEEEECCC--------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEEC-CCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 357899999999 7766665 5789999998 4565 5555443
Q ss_pred --------------------CCCceeeEEEccCCCEE-EEEECCCcEEEEECC--CCcEEEEee---CCCcceEEEEccC
Q 007431 356 --------------------HSKAVRDISFCNDGTKF-LTASYDKNIKYWDTE--TGQVIRTFS---TGKIPYVVKLNPD 409 (604)
Q Consensus 356 --------------------h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~--t~~~i~~~~---~~~~~~~~~~~~~ 409 (604)
|...|++++|+|++++| ++++.||.|+|||+. +++.+..+. ....+.++.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 34479999999999996 889999999999999 888888774 3455667788775
Q ss_pred CCCCcEEEEEEcCCeEEEEeCCCCceEE----EEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCeEEEEee
Q 007431 410 DDKQNILLAGMSDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 410 ~~~~~~lvsg~~dg~I~iwD~~s~~~~~----~~~~h~~~V~~i~~sp~---~~~l~sgs~Dg~I~iwdl~~~~~~~~~~ 482 (604)
+ .+|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +++|++++.|+.|++||++++..+..+.
T Consensus 161 ~---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 161 D---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp S---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred C---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 4 689999999999999998876443 66789999999999999 9999999999999999999988887766
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc--------Cc------------ccccceEEEEEc
Q 007431 483 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------GH------------IVAGYACQVNFS 542 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--------~~------------~~~~~v~~l~~s 542 (604)
..|...|.+++|+ ++++|++++.|+.|++||+.++..+....... .+ .....+..++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 6799999999999 99999999999999999998876554332110 00 123457889999
Q ss_pred CCCCEEEEEc-CCCcEEEEeC--CCC---eeEEEEecCCCcEEEEEEecCCCCEEEEEeC-------CCcEEEe
Q 007431 543 PDGRFVMSGD-GEGKCWFWDW--KSC---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYW 603 (604)
Q Consensus 543 pdg~~L~sgs-~dG~I~iwd~--~t~---~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~-------DG~I~vW 603 (604)
|++++|++++ .++.|++|++ .++ +.+..+..| +.|.+++|+| ++ ++++++. +..|.+|
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEE
Confidence 9999999998 8999999999 666 778888888 7899999999 54 5555543 4557777
No 87
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-30 Score=272.12 Aligned_cols=253 Identities=20% Similarity=0.289 Sum_probs=207.8
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC--CCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCe
Q 007431 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~--t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
+++..+.+|...|++++|+|++++|++|+.||.|+|||+. +++.+..+..+ ..+.++.|.+.. .+.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCE
Confidence 4566788999999999999999999999999999999998 55566666543 345567776542 2478999999999
Q ss_pred EEEEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcC---
Q 007431 425 IVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHP--- 496 (604)
Q Consensus 425 I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~--~~~l~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp--- 496 (604)
|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .......|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77888889999999999999 99999999999999999987632 2222346888999999999
Q ss_pred ----------CCCEEEEEEcCCeEEEEEcCCceee-cccccccCcccccceEEEEEcCC---CCEEEEEcCCCcEEEEeC
Q 007431 497 ----------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 497 ----------~g~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~spd---g~~L~sgs~dG~I~iwd~ 562 (604)
++.+|++++.|+.|++||++..... .....+.+| ...+.+++|+|+ +++|++++.||.|++||+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999999999999999765432 223345555 567899999999 899999999999999999
Q ss_pred CCCe---eEEEE--ecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 563 KSCK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 563 ~t~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.++. ....+ ..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEe
Confidence 8864 22222 23788999999999 778999999999999996
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=6.4e-30 Score=266.26 Aligned_cols=283 Identities=14% Similarity=0.168 Sum_probs=226.2
Q ss_pred ccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 007431 264 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 343 (604)
Q Consensus 264 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~ 343 (604)
..+.+...+......|...+.|-..... .+++..+.+|...|++++|+|+ +.+|++|+.||.|++||+
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEEC
Confidence 3444444455555567777777442210 1278889999999999999998 999999999999999999
Q ss_pred CCCCeeeE--EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEeeCC--CcceEEEEccCCCCCcEE
Q 007431 344 VNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFSTG--KIPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 344 ~~~~~~~~--~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~---i~~~~~~--~~~~~~~~~~~~~~~~~l 416 (604)
..++... .+..|...|.+++|+|++++|++++.|+.|++||+..+.. ...+... ..+.++.+.+++ .+|
T Consensus 82 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l 157 (372)
T 1k8k_C 82 -KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS---VLL 157 (372)
T ss_dssp -ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS---SEE
T ss_pred -CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC---CEE
Confidence 4555433 3467999999999999999999999999999999998873 3344333 345566676643 689
Q ss_pred EEEEcCCeEEEEeC------------------CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEE
Q 007431 417 LAGMSDKKIVQWDM------------------NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 417 vsg~~dg~I~iwD~------------------~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
++|+.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+++...+
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 99999999999995 467888899999999999999999999999999999999999999888
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC--cee--e-----------------c----------c----
Q 007431 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE--RFQ--L-----------------N----------K---- 523 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~--~~~--~-----------------~----------~---- 523 (604)
..+. .+...+.+++|+|++.+|+++ .|+.|++|++.. +.. . . .
T Consensus 238 ~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1k8k_C 238 ATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315 (372)
T ss_dssp EEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred EEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence 8776 577899999999999988877 999999999987 320 0 0 0
Q ss_pred ---cccccCcccccceEEEEEc-CCC---CEEEEEcCCCcEEEEeCCCCe
Q 007431 524 ---KKRFAGHIVAGYACQVNFS-PDG---RFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 524 ---~~~~~~~~~~~~v~~l~~s-pdg---~~L~sgs~dG~I~iwd~~t~~ 566 (604)
.....+| ...|.+++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 316 ~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 316 AAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1111355 5679999866 677 999999999999999987654
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-31 Score=292.12 Aligned_cols=273 Identities=11% Similarity=0.054 Sum_probs=204.0
Q ss_pred CcceeEEecCCCCCeEEEEEcCCC-C-------CEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKY-G-------HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 373 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~-g-------~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~ 373 (604)
+.++..++. +.+.|.+|+|+|+. + ++||+|+.++.. ...+|+++.|+
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~la 177 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFD 177 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccchhhhhhc
Confidence 445555665 78999999999983 1 799998866420 01368999999
Q ss_pred EEECCCcEEEEECCCCcEE----EEeeC-CCcceEEEEccCC---CCCcEEEEEEcCCeEEEEeCCCCce----------
Q 007431 374 TASYDKNIKYWDTETGQVI----RTFST-GKIPYVVKLNPDD---DKQNILLAGMSDKKIVQWDMNTKEI---------- 435 (604)
Q Consensus 374 s~s~Dg~I~vWD~~t~~~i----~~~~~-~~~~~~~~~~~~~---~~~~~lvsg~~dg~I~iwD~~s~~~---------- 435 (604)
+++.|++|+|||+.+++.. ..+.. ...+..+.|+|.. ....+|++|+.||.|++||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 9999999999999887642 22333 3456778888862 1246899999999999999987632
Q ss_pred -EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEE--EEcCCC-CEEEEEEcCCeEE
Q 007431 436 -TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI--SLHPNT-NWLAAQSLDNQIL 511 (604)
Q Consensus 436 -~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l--~~sp~g-~~l~s~s~Dg~I~ 511 (604)
...+.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++ +++|++ .+|++++.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467889999999999986 4899999999999999987643322234688999999 568887 8999999999999
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEE
Q 007431 512 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 591 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 591 (604)
|||+++..... .+.+|.....+.+++|+|+++.|++++.|+.|++||++++.++..+.+|.+.|++|+|+| ++.+|
T Consensus 337 lWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l 412 (524)
T 2j04_B 337 IFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV 412 (524)
T ss_dssp EECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred EEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence 99998754432 233443223466799999999999999999999999999999889999999999999999 67799
Q ss_pred EEEeCCCcEEEeC
Q 007431 592 ATCGWDGLIKYWD 604 (604)
Q Consensus 592 ~tgg~DG~I~vWD 604 (604)
++|+.||+|++||
T Consensus 413 ~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 413 LAGSADGSLIITN 425 (524)
T ss_dssp EEEETTTEEECCB
T ss_pred EEEECCCEEEEEe
Confidence 9999999999997
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=269.02 Aligned_cols=272 Identities=13% Similarity=0.161 Sum_probs=214.7
Q ss_pred ccccceeecCCCccccCCCCcccCccee-EEecCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEecCCCCe-eeEEec
Q 007431 279 DYQGRSWIAPPKDAKAANDHCYIPKRLV-HTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVVNSGK-CMRTYM 354 (604)
Q Consensus 279 d~~~r~w~~~~~~~~~~~~~~~~p~~~i-~tl~gH~~~V~~l~fsp~~--g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~ 354 (604)
|...+.|-.... ++. ....+|...|++++|+|+. +.+|++|+.||.|++||+. .+. ++..+.
T Consensus 43 d~~v~iw~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 108 (357)
T 3i2n_A 43 TGVIQLYEIQHG-------------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE-APEMPVYSVK 108 (357)
T ss_dssp CEEEEEEEECSS-------------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT-SCSSCSEEEC
T ss_pred CcEEEEEeCCCC-------------cccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC-CCCccEEEEE
Confidence 677777755322 222 2233899999999999984 6999999999999999994 444 889999
Q ss_pred CCCCceeeEEE------ccCCCEEEEEECCCcEEEEECCCCc-EEEEeeCCC-----cceEEEEcc-CCCCCcEEEEEEc
Q 007431 355 GHSKAVRDISF------CNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGK-----IPYVVKLNP-DDDKQNILLAGMS 421 (604)
Q Consensus 355 ~h~~~V~~l~f------spdg~~L~s~s~Dg~I~vWD~~t~~-~i~~~~~~~-----~~~~~~~~~-~~~~~~~lvsg~~ 421 (604)
+|...|.++.| +|++++|++++.||.|++||+.++. .+..+.... ....+.+.+ ...++.++++|+.
T Consensus 109 ~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence 99999999955 6789999999999999999999887 666664422 334444322 2234579999999
Q ss_pred CCeEEEEeCCCCceEEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCeEEEEe----ecCCCCcccEEEE
Q 007431 422 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYI----SEPHMHSMPSISL 494 (604)
Q Consensus 422 dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~~v~~l~~ 494 (604)
|+.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||++.......+ ...|...|.+++|
T Consensus 189 d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp TSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred CCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 99999999999987554 56889999999999 8999999999999999999765433222 2368899999999
Q ss_pred cCCCC-EEEEEEcCCeEEEEEcCCceee----------------cccccccCcccccceEEEEEcCCCCEEE-EEcCCCc
Q 007431 495 HPNTN-WLAAQSLDNQILIYSTRERFQL----------------NKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGK 556 (604)
Q Consensus 495 sp~g~-~l~s~s~Dg~I~iwd~~~~~~~----------------~~~~~~~~~~~~~~v~~l~~spdg~~L~-sgs~dG~ 556 (604)
+|++. +|++++.||.|++||++..... .....+.+| ...|.+++|+|+|++|+ +++.||.
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCc
Confidence 99998 8999999999999999764322 233445555 56789999999999998 8999999
Q ss_pred EEEEeCCCCee
Q 007431 557 CWFWDWKSCKV 567 (604)
Q Consensus 557 I~iwd~~t~~~ 567 (604)
|++||+.+.+.
T Consensus 346 i~iw~~~~~~~ 356 (357)
T 3i2n_A 346 VRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECC---
T ss_pred EEEEECCCccc
Confidence 99999987654
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-29 Score=266.61 Aligned_cols=271 Identities=17% Similarity=0.229 Sum_probs=219.5
Q ss_pred ccccccceeecCCCccccCCCCcccCcceeEEecC-CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC
Q 007431 277 ETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 355 (604)
Q Consensus 277 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~ 355 (604)
..|...+.|-... .++...+.. |...|++++|+|+ +.+|++|+.||.|+|||+ ..++.+..+.+
T Consensus 110 ~~d~~v~lw~~~~-------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~ 174 (401)
T 4aez_A 110 ALERNVYVWNADS-------------GSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLRTMAG 174 (401)
T ss_dssp EETTEEEEEETTT-------------CCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECC
T ss_pred ECCCeEEEeeCCC-------------CcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEEEecC
Confidence 4566667665432 244455554 8999999999998 999999999999999999 67888999999
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECC-CCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007431 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~-t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
|...|.+++| ++++|++++.||.|++||+. .+..+..+..+ ..+.++.++++ +.+|++|+.|+.|++||++++
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD---GLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTCS
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---CCEEEEEeCCCeEEEccCCCC
Confidence 9999999999 46799999999999999999 45556665543 34556777764 378999999999999999999
Q ss_pred ceEEEEcCcCCceeEEEEeCCCC-EEEEEe--CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCC
Q 007431 434 EITQEYDQHLGAVNTITFVDSNR-RFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDN 508 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~-~l~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s--~Dg 508 (604)
+.+..+..|...|.+++|+|++. ++++++ .|+.|++||+.++..+..+. +...+.+++|+|++++|++++ .||
T Consensus 250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCC
Confidence 99999999999999999999765 556654 79999999999998888774 567899999999999999965 899
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 509 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 509 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
.|++|++.+..... ...+.+| ...+.+++|+|+|++|++++.||.|++|++.+++.+....
T Consensus 328 ~i~v~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 328 NLSIWSYSSSGLTK-QVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEEETTEEEE-EEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred cEEEEecCCcccee-EEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 99999998754332 2234455 4678899999999999999999999999999998776554
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=266.63 Aligned_cols=327 Identities=13% Similarity=0.173 Sum_probs=219.9
Q ss_pred CCCccccC-cceeeccCccccccceeecCCCccccCCCCcccCcceeE-----EecCCCCCeEEEEEcCCCCCEEEEEEC
Q 007431 261 EKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVH-----TWSGHTKGVSAIRFFPKYGHLILSAGM 334 (604)
Q Consensus 261 ~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~-----tl~gH~~~V~~l~fsp~~g~~L~sgs~ 334 (604)
.....+.+ ...+......|...+.|-........ ........ ...+|...|++++|+|+++.+|++++.
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 33344555 55566677778888888665432110 00001111 124699999999999965889999999
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccC---CCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCC
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND---GTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDD 410 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspd---g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~ 410 (604)
||.|++||+ ..++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.+++.+..+..+ ..+.++.+.+++
T Consensus 121 d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 121 DKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp TSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred CCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 999999999 6777777765 7888999999984 459999999999999999999988888643 445677777654
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCCc-eEEEE---------------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007431 411 DKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 474 (604)
Q Consensus 411 ~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~---------------~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~ 474 (604)
..++++|+.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 199 --~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 199 --DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp --TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred --CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 3589999999999999998775 33443 46889999999999999999999999999999988
Q ss_pred CeEEEEeec----CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007431 475 PVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 475 ~~~~~~~~~----~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
+........ .....+........+..+++++.++.|++||+.++..+. .+.+| ...|.+++|+|++++|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT---MLKGH--YKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE---EECCC--SSCEEEEEEETTTTEEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee---eeccC--CCeEEEEEEcCCCCEEEE
Confidence 765433221 111222233333445667778889999999998876553 34455 467889999999999999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 551 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+.||.|++||+.+++.+.....+.. ...+.+.....+.+++.|+.+++|+
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EETTSCEEEEEECC----------------------------------------
T ss_pred ECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 99999999999999988776654432 2334454555677888899999995
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.1e-29 Score=263.27 Aligned_cols=280 Identities=10% Similarity=0.138 Sum_probs=207.0
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCc
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKN 380 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~ 380 (604)
..++++++.+|...|+|++|+|+ +.+|++|+.++ ++||++ .......... ...+..+++.++++.+ ++++.|+.
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNV-HPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEE-TTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEec-CCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence 34566778899999999999999 89999988775 789998 4555544433 2358889999988877 56777899
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEE
Q 007431 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
|+|||+.+++++..+.....+..+.+.+. .++++ .++.|++||+.++ +.+..+.. +...+++++ .+++
T Consensus 83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred EEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 99999999999999887776666666542 34443 4889999999988 65555443 445566776 5666
Q ss_pred E--EeCCCcEEEEECCCCe---------------E-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEcCCcee
Q 007431 460 T--SSDDKSLRVWEFGIPV---------------V-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQ 520 (604)
Q Consensus 460 s--gs~Dg~I~iwdl~~~~---------------~-~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~-I~iwd~~~~~~ 520 (604)
+ |+.||.|++||+..+. + +.. ...|...|.+++|+|++++|++++.|++ |++||++++..
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~-~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL-IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEE-ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEE-EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 5 5889999999998754 1 233 3479999999999999999999999998 99999998766
Q ss_pred eccccccc-C-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE--EE------------------Ee---cCC
Q 007431 521 LNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RT------------------LK---CHE 575 (604)
Q Consensus 521 ~~~~~~~~-~-~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~--~~------------------l~---~h~ 575 (604)
+.. +. + | ...|.+++|+|+|++|++++.||.|++||+..+... .. +. .+.
T Consensus 231 ~~~---~~~g~h--~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 231 VRE---FRRGLD--RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp EEE---EECTTC--CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred EEE---EEcCCC--CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 533 33 3 4 467999999999999999999999999999764311 11 11 112
Q ss_pred CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 576 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 576 ~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.....++|++ ++.+|++++.||.+++|+
T Consensus 306 ~~~~~~a~~~-d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 306 VRGCKIAWIS-ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCCCEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 2236689999 778999999999999985
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.8e-29 Score=265.63 Aligned_cols=264 Identities=19% Similarity=0.319 Sum_probs=209.8
Q ss_pred cceeEEe--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007431 303 KRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 303 ~~~i~tl--~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
.++++.+ .+|...|+||+|+|+ +.+|++|+.||+|+|||+ .++++++.+.+|...|.+++++ +..|++|+.|+.
T Consensus 135 g~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~ 210 (420)
T 4gga_A 135 GDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGH 210 (420)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCc
Confidence 3455544 578889999999999 999999999999999999 7889999999999999998874 679999999999
Q ss_pred EEEEECCCCcE-EEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc----eEEEEcCcCCceeEEEEeCC
Q 007431 381 IKYWDTETGQV-IRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 381 I~vWD~~t~~~-i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~----~~~~~~~h~~~V~~i~~sp~ 454 (604)
+++||...... +..+..+. ....+.+.+. +.++++++.|+.|++|+..+++ .+.....|...|.+++|+|.
T Consensus 211 i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~---g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 211 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPD---GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287 (420)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred eeEeeecccceeeEEecccccceeeeeecCC---CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence 99999987544 44444332 3344555554 3789999999999999998764 45677889999999999997
Q ss_pred CC-EEEE--EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCCeEEEEEcCCceeecccccccC
Q 007431 455 NR-RFVT--SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 455 ~~-~l~s--gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~ 529 (604)
+. .+++ |+.|++|++||+.++.....+. ....+.++.|+|+++.+++++ .|+.|+|||+.++..+ ..+.+
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v---~~l~g 362 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---AELKG 362 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---EEECC
T ss_pred cccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE---EEEcC
Confidence 65 4444 4579999999999999888875 456789999999999998876 6899999999887655 44667
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEE
Q 007431 530 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 580 (604)
Q Consensus 530 ~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~ 580 (604)
| ...|.+++|+|+|++|++|+.||+|+|||+....+......+...+..
T Consensus 363 H--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 363 H--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp C--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred C--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 7 578999999999999999999999999999887776666655544433
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-30 Score=293.60 Aligned_cols=257 Identities=21% Similarity=0.349 Sum_probs=208.8
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCeeeEEecCCCCceeeEEEccC--CCEEEEEECCCcEE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIK 382 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~L~s~s~Dg~I~ 382 (604)
+.++.||.+.|++++|+|+ +.+|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4678899999999999999 89999999999999999942 45778889999999999999987 99999999999999
Q ss_pred EEECCCCc--EEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeC----
Q 007431 383 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD---- 453 (604)
Q Consensus 383 vWD~~t~~--~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~sp---- 453 (604)
+||+.+++ .+..+. ....+.++.++++. .+.++++|+.||.|++||++++ .....+..|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 99999986 444444 33456677777752 1378999999999999999887 34556778999999999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEECCCCe---EEEEeecCCCCcccEEEEcCC---CCEEEEEEcCCeEEEEEcCCc
Q 007431 454 ---------SNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 454 ---------~~~~l~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~~v~~l~~sp~---g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
++.+|++|+.||.|++||++... ........|...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998763 222333468999999999999 899999999999999999876
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
.................+.+++|+|+|++|++|+.||.|++|++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 4322222222222356788899999999999999999999999874
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=262.52 Aligned_cols=270 Identities=8% Similarity=0.034 Sum_probs=207.3
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC---------CCcE
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQV 391 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~---------t~~~ 391 (604)
++++ +.+|++|+.||+|++||+ .+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCC-CCEEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3445 789999999999999999 6777777775 577899999988 9999999999999665 6666
Q ss_pred EEEeeCCCc--ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007431 392 IRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 392 i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~-~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
+..+...+. +.++.+.+.. .+.++++|+.||.|++||+++++.+..+. .|...|++++|+|++.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 666665544 4555555511 23789999999999999999999877764 4556899999999999999999999999
Q ss_pred EEECCCCeEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007431 469 VWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 469 iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
+||++++... ..+...|...|.+++|+|++.+|++++ ++.|++||++..........+..+.......+++|+|+|++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9999998876 555444899999999999999999999 55999999998765544444333322211146999999999
Q ss_pred EEEEcC-CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC--CCCEEEEEeCCCcEEEe
Q 007431 548 VMSGDG-EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--EQSKVATCGWDGLIKYW 603 (604)
Q Consensus 548 L~sgs~-dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~--~~~~l~tgg~DG~I~vW 603 (604)
|++++. ++.|++|++.+....... .++..+.|.+. +...|++++.||.+.++
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999988 999999999765443332 45667777762 34467778888887765
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-30 Score=273.49 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=195.7
Q ss_pred ecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC--cEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEe
Q 007431 353 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 429 (604)
Q Consensus 353 ~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~--~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 429 (604)
+..|..+|++++|+|++++|++++.|+.|+|||+.++ +.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEE
Confidence 4446789999999999999999999999999999988 566666543 345677777754 6799999999999999
Q ss_pred CCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCCCEEEE
Q 007431 430 MNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 430 ~~s~~---~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s 503 (604)
+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||++.... ...+..+|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 6777888999999999999999999999999999999988763 55555458999999999999999999
Q ss_pred EEcCCeEEEEEcCCce---------------eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-
Q 007431 504 QSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV- 567 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~- 567 (604)
++.|+.|++||+.... .......+ +| ...+.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 9999999999985321 01112223 44 56799999999999999999999999999999987
Q ss_pred ---EEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 568 ---FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 568 ---~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+..+..|...|.+++|+| ++.+|++|+.|+.+ +|+
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EEC
T ss_pred ceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEE
Confidence 888999999999999999 67788888866666 553
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.3e-29 Score=266.75 Aligned_cols=276 Identities=17% Similarity=0.225 Sum_probs=222.3
Q ss_pred ccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------
Q 007431 274 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------ 347 (604)
Q Consensus 274 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~------ 347 (604)
.....|...+.|-...... ....+..+.+|.+.|++++|+|.++.+|++|+.||+|+||++. .+
T Consensus 51 ~~~~~~g~i~v~~~~~~~~---------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~-~~~~~~~~ 120 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGR---------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLVLPL 120 (402)
T ss_dssp BCCSSSCCEEEEETTCCEE---------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC-TTCCSSCB
T ss_pred EEEcCCCEEEEEECccCCC---------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc-CCCCcccc
Confidence 3455667777775532211 1134456789999999999999339999999999999999994 44
Q ss_pred -eeeEEecCCCCceeeEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEcC
Q 007431 348 -KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 348 -~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~Dg~I~vWD~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~d 422 (604)
.++..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+. ....+.++.+++++ .+|++++.|
T Consensus 121 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d 197 (402)
T 2aq5_A 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTSCRD 197 (402)
T ss_dssp CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEEETT
T ss_pred CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEEecC
Confidence 6788899999999999999998 699999999999999999999998883 23445677777743 679999999
Q ss_pred CeEEEEeCCCCceEEEE-cCcCCc-eeEEEEeCCCCEEEEE---eCCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcC
Q 007431 423 KKIVQWDMNTKEITQEY-DQHLGA-VNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~-~~h~~~-V~~i~~sp~~~~l~sg---s~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp 496 (604)
+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|++| +.|+.|++||++.... +......+...+.+++|+|
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC
Confidence 99999999999999988 788876 8999999999999999 7999999999987653 3333345777899999999
Q ss_pred CCCEEEEEE-cCCeEEEEEcCCcee-ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007431 497 NTNWLAAQS-LDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 497 ~g~~l~s~s-~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~ 567 (604)
++++|++++ .|+.|++|++.+... +..+.. +.....+.+++|+|++.++++ .++.+++|++.++++
T Consensus 278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp TTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 999997655 699999999987653 322222 223467889999999998875 566999999988764
No 99
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.5e-29 Score=263.04 Aligned_cols=250 Identities=15% Similarity=0.120 Sum_probs=202.0
Q ss_pred CCCeeeEEecCCCCceeeEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEE
Q 007431 345 NSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGM 420 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~Dg~I~vWD~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~ 420 (604)
........+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. ....+.++.|.+. ++.+|++++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~ 138 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSS 138 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEE
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEe
Confidence 3556777889999999999999998 999999999999999999998887775 3344556677663 337899999
Q ss_pred cCCeEEEEeCCCCceEEEEcCc---CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC
Q 007431 421 SDKKIVQWDMNTKEITQEYDQH---LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 421 ~dg~I~iwD~~s~~~~~~~~~h---~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~ 497 (604)
.|+.|++||+++ ..+..+..+ ...|.+++|+|++++|++++.|+.|++||++ ...+..+. .|...|.+++|+|+
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK-LHKAKVTHAEFNPR 215 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE-CSSSCEEEEEECSS
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec-cCCCcEEEEEECCC
Confidence 999999999996 455555444 4889999999999999999999999999994 55555554 58899999999999
Q ss_pred CC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007431 498 TN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 498 g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
+. +|++++.|+.|++||+++...........+| ...+.+++|+| ++++|++++.||.|++||+.+++.+..+..|.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 98 9999999999999999873221111111133 57789999999 99999999999999999999988877777553
Q ss_pred -----------------CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 576 -----------------GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 576 -----------------~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+..++|+| ++.+ +|+.||.|+|||
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEe
Confidence 3344566666 3333 778999999997
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.4e-29 Score=269.65 Aligned_cols=255 Identities=17% Similarity=0.288 Sum_probs=209.3
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---------CeeeEEecCCCCceeeEEEccCCC-EEEEE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---------GKCMRTYMGHSKAVRDISFCNDGT-KFLTA 375 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~---------~~~~~~~~~h~~~V~~l~fspdg~-~L~s~ 375 (604)
+....+|.+.|++++|+|+++.+|++|+.||.|+||++... ...+..+.+|...|.+|+|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 35566899999999999976789999999999999999431 577888999999999999999988 99999
Q ss_pred ECCCcEEEEECCCCcE-------EEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCC
Q 007431 376 SYDKNIKYWDTETGQV-------IRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLG 444 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~-------i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~ 444 (604)
+.||.|++||+.++.. ...+. ....+.++.|.+. +..+|++++.||.|++||++++ ..+..+..|..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL--HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS--CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC--CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 9999999999987422 22332 2334566777664 3479999999999999999987 57778889999
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceee
Q 007431 445 AVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 445 ~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
.|++++|+|++. +|++|+.||.|++||++.. ..+..+. .|...|.+++|+|+++ +|++++.|+.|++||+......
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999999887 6889999999999999974 4444443 5889999999999985 7999999999999999762211
Q ss_pred -----------cccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCC
Q 007431 522 -----------NKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 522 -----------~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs~dG~I~iwd~~t~ 565 (604)
.....+.+| ...+.+++|+|++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 222334444 56789999999999 8999999999999998653
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=279.88 Aligned_cols=266 Identities=12% Similarity=0.149 Sum_probs=214.9
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe-cCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCC---Cc---EE
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET---GQ---VI 392 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~-~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t---~~---~i 392 (604)
|+|+ +..+++++ .|+. .++++..+ .+|...|++++|+| ++++|++|+.||.|+|||+.+ +. ..
T Consensus 35 f~~~-~~~~~~~~------~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCC-CCCCCCCC------GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCc-cccccccc------cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 5666 66666554 4875 67888888 89999999999999 999999999999999999976 43 34
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC---CCceEEEEcC------------cCCceeEEE--EeCCC
Q 007431 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQ------------HLGAVNTIT--FVDSN 455 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---s~~~~~~~~~------------h~~~V~~i~--~sp~~ 455 (604)
..+.....+.++.+.+++ .+|++|+.||.|++||+. +++....+.. +...+.++. +++++
T Consensus 106 ~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNF---DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp EEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeccCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 444556667778887643 689999999999999994 5555443332 455666776 55789
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
.+|++++.|+.|++||+++...+..+... |...|.+++|+|++.+|++++.||.|++||++.+..+..... .+ ..
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~ 258 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GD--HA 258 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TT--CE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CC--CC
Confidence 99999999999999999999988888654 788999999999999999999999999999998765533221 23 34
Q ss_pred ceEEEEEc----CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC--------------------------CCcEEEEEEe
Q 007431 535 YACQVNFS----PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH--------------------------EGVCIGCEWH 584 (604)
Q Consensus 535 ~v~~l~~s----pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h--------------------------~~~V~~v~~s 584 (604)
.|.+++|+ |++.+|++|+.||.|++||+.+++++..+.+| ...|.+++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 68888555 56889999999999999999999999888855 3457788888
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 007431 585 PLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~vWD 604 (604)
+ +.+|++|+.||.|++||
T Consensus 339 ~--~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 339 N--DKILLTDEATSSIVMFS 356 (437)
T ss_dssp T--TEEEEEEGGGTEEEEEE
T ss_pred C--ceEEEecCCCCeEEEEE
Confidence 3 47999999999999997
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7e-29 Score=266.03 Aligned_cols=247 Identities=19% Similarity=0.330 Sum_probs=204.3
Q ss_pred EEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCC----------CcEEEEeeC-CCcceEEEEccCCCCCcEEEE
Q 007431 351 RTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTET----------GQVIRTFST-GKIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t----------~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvs 418 (604)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ...+..+.. ...+.++.|.+.+. .+|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN--GYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST--TEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC--CeEEE
Confidence 455689999999999997 78999999999999999986 455555554 34456778877543 48999
Q ss_pred EEcCCeEEEEeCCCCce-------EEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCC---eEEEEeecCCCC
Q 007431 419 GMSDKKIVQWDMNTKEI-------TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIP---VVIKYISEPHMH 487 (604)
Q Consensus 419 g~~dg~I~iwD~~s~~~-------~~~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~---~~~~~~~~~~~~ 487 (604)
|+.||.|++||+.++.. ...+..|...|.+++|+| ++.+|++++.||.|++||++.. ..+..+. .|..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCC
Confidence 99999999999987321 456778999999999999 6789999999999999999876 3444443 6888
Q ss_pred cccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCC-
Q 007431 488 SMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS- 564 (604)
Q Consensus 488 ~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs~dG~I~iwd~~t- 564 (604)
.|.+++|+|++. +|++++.||.|++||++.... ....+.+| ...+.+++|+|+++ +|++++.||.|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999999987 789999999999999987422 23344455 56789999999985 689999999999999987
Q ss_pred -------------CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 565 -------------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 565 -------------~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++..+.+|...|.+++|+|++..+|++++.||.|+||+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 3677788899999999999995444999999999999996
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-28 Score=247.52 Aligned_cols=270 Identities=18% Similarity=0.257 Sum_probs=220.7
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--Cee
Q 007431 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--GKC 349 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~--~~~ 349 (604)
+......|...+.|-.. ..++...+.+|...|.+++|+|+ +.+|++|+.||.|++|++... .+.
T Consensus 31 ~l~s~~~dg~v~vw~~~-------------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~ 96 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKD-------------DQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDP 96 (313)
T ss_dssp EEEEEETTSEEEEEEES-------------SSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC
T ss_pred EEEEEEcCCcEEEEECC-------------CCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCc
Confidence 34555667777777542 34677888899999999999999 999999999999999998543 366
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007431 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
+..+.+|...|.+++| ++++|++++.||.|++|| .++.+..+..+ .....+.+.+. .+.++++++.|+.|++|
T Consensus 97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF--SENKFLTASADKTIKLW 170 (313)
T ss_dssp -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC--CCCEEEEEECCCCEEEE
Confidence 7888999999999999 577999999999999999 66666666543 34456666663 23689999999999999
Q ss_pred eCCCCceEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007431 429 DMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 507 (604)
Q Consensus 429 D~~s~~~~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D 507 (604)
| ..+....+.. |...|.+++|+|++. |++++.||.|++||++++..+..+. .|...|.+++|+|++ .|++++.|
T Consensus 171 d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 171 Q--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp E--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEEEETT
T ss_pred e--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEEEecC
Confidence 9 5566777777 999999999999988 9999999999999999998887775 588899999999999 58999999
Q ss_pred CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 508 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 508 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
+.|++||+.++..... +..+ ...+.+++|+|+++ +++++.||.|++||+.+++.+....
T Consensus 246 g~v~iwd~~~~~~~~~---~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 246 RTVRIWSKENGSLKQV---ITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp SEEEEECTTTCCEEEE---EECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred CEEEEEECCCCceeEE---Eecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999999988765533 3344 45788999999998 5568899999999999887665443
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.4e-28 Score=260.64 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=232.8
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE-----EecCCCCceeeEEEccCCCEEEEEECC
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-----TYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~-----~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
+.+..+..+. .+.+++|+|+ +.++++++.++.|++||+ .+++.+. .+.+|...|.+++|++++.++++++.|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~-~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDN-TRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSS-SEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred eEEEEEcCCC-CceEEEEeCC-CeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 4455665554 4669999995 889999999999999999 5677666 345889999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007431 379 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
+.|++||+.+++.+..+.. ...+..+.+.+++. .++++++.++.|++||+++++.+..+.. ...+.+++|+|++++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKE 267 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCE
Confidence 9999999999999888864 44566777877542 4456666899999999999988887765 456999999999999
Q ss_pred EEEEe--------CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEE-EEEEcCCeEEEEEcCCceeeccccccc
Q 007431 458 FVTSS--------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 458 l~sgs--------~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
|++++ .|+.|++||+.++.....+. +...+.+++|+|+++.+ ++++.++.|++||+.++.......
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--- 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--- 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---
Confidence 99888 58899999999988776653 44578899999999755 555789999999998776553332
Q ss_pred CcccccceEEEEEcCCCCEEEEEcC---------------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEE
Q 007431 529 GHIVAGYACQVNFSPDGRFVMSGDG---------------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs~---------------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~t 593 (604)
+ ...+.+++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|++
T Consensus 343 -~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 417 (433)
T 3bws_A 343 -V--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVI 417 (433)
T ss_dssp -C--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEE
T ss_pred -C--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEE
Confidence 1 345778999999999988876 579999999999999988864 5689999999 6677777
Q ss_pred EeC-CCcEEEeC
Q 007431 594 CGW-DGLIKYWD 604 (604)
Q Consensus 594 gg~-DG~I~vWD 604 (604)
++. |+.|++||
T Consensus 418 ~~~~d~~i~v~~ 429 (433)
T 3bws_A 418 SDFLDHQIRVYR 429 (433)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCeEEEEE
Confidence 764 99999996
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.6e-28 Score=253.67 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=221.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCcceEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 404 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~ 404 (604)
+.++++++.|+.|++||+ .+++++..+..|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDV-TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CEEEEEcCCCCEEEEEEC-CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 457889999999999999 67888888887754 8999999999977 56778999999999999999999888888888
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCeEEEEeec
Q 007431 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l-~sgs~Dg~I~iwdl~~~~~~~~~~~ 483 (604)
.+.+++. .+++++..++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.+++.+..+..
T Consensus 80 ~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 80 AVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 8887543 45566667899999999999988888654 568999999999977 6888899999999999988877753
Q ss_pred CCCCcccEEEEcCCCCEE-EEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEE
Q 007431 484 PHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWF 559 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs---~dG~I~i 559 (604)
...+.+++|+|++++| ++++.++.|++||+.++....... . ...+.+++|+|+|++|++++ .++.|++
T Consensus 157 --~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 157 --GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---V---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp --CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C---SSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---c---CCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 3457899999999988 566778999999998876543322 1 24567899999999999888 6899999
Q ss_pred EeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 560 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 560 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
||+.+++.+..+..|.. +.+++|+|++..++++++.|+.|++||
T Consensus 229 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999999999987764 789999994433447888999999997
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=271.75 Aligned_cols=246 Identities=20% Similarity=0.359 Sum_probs=198.5
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc-----------EEEEeeCC-------------CcceEEEEccCC
Q 007431 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTG-------------KIPYVVKLNPDD 410 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~-----------~i~~~~~~-------------~~~~~~~~~~~~ 410 (604)
.|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ++..+..+ ..+..+.|.+.+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 46666554 446778888764
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCCceE---------------------------------------EE-EcCcCCceeEEE
Q 007431 411 DKQNILLAGMSDKKIVQWDMNTKEIT---------------------------------------QE-YDQHLGAVNTIT 450 (604)
Q Consensus 411 ~~~~~lvsg~~dg~I~iwD~~s~~~~---------------------------------------~~-~~~h~~~V~~i~ 450 (604)
. ...|++++.|+.|++||+.++... .. ..+|...|.+++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 2 257999999999999999764432 12 367999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-eEEEEe------ecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceee-
Q 007431 451 FVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYI------SEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL- 521 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~------~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~- 521 (604)
|+|++++|++| .|+.|++||++.. ..+..+ ...|...|.+++|+|++ .+|++++.|+.|++||+++....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 7999999999844 333332 33578889999999998 99999999999999999876531
Q ss_pred cccccccCccc----------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCc-------------
Q 007431 522 NKKKRFAGHIV----------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGV------------- 577 (604)
Q Consensus 522 ~~~~~~~~~~~----------~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~------------- 577 (604)
.....+.++.. ...+.+++|+|+|++|++++. |.|++||+.+ ++++..+.+|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 11233444421 137899999999999999999 9999999997 8999999988642
Q ss_pred --EEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 578 --CIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 578 --V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+..++|+| ++.+|++|+.||.|+|||
T Consensus 343 ~~~~~~~~s~-~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 343 FDKFECCWNG-SDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GCCCCEEECT-TSSEEEEECSTTEEEEEE
T ss_pred ccceEEEECC-CCCEEEEeccCCEEEEEE
Confidence 33499999 778999999999999997
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.1e-29 Score=270.51 Aligned_cols=276 Identities=14% Similarity=0.130 Sum_probs=204.2
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE
Q 007431 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 351 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~ 351 (604)
+.+.+..|..++.|-..... ...+..+.+|.+.|++|+|+|.++.+|++|+.||+|+|||+ .......
T Consensus 134 ~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~-~~~~~~~ 201 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF-KGNILRV 201 (435)
T ss_dssp CEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET-TSCEEEE
T ss_pred EEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec-cCCceeE
Confidence 45667788889998543221 23445677999999999999966899999999999999999 3443333
Q ss_pred Eec--CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007431 352 TYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 352 ~~~--~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
... .+...+.+++|+|++.+|++|+.||.|++||++. +.+..+.. ...+.++.|+|.. ..+|++|+.|+.|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~--~~~~~s~s~d~~v~iw 278 (435)
T 4e54_B 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC--DWFLATASVDQTVKIW 278 (435)
T ss_dssp EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC--SSEEEEEETTSBCCEE
T ss_pred EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC--ceEEEEecCcceeeEE
Confidence 332 2345688999999999999999999999999975 44444443 3345566776654 4789999999999999
Q ss_pred eCCCCceEE---EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC------CcccEEEEcCCCC
Q 007431 429 DMNTKEITQ---EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM------HSMPSISLHPNTN 499 (604)
Q Consensus 429 D~~s~~~~~---~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~------~~v~~l~~sp~g~ 499 (604)
|+++.+... ...+|...|++++|+|++++|++++.||.|+|||+........+.. |. ..+..+.|+|++.
T Consensus 279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 357 (435)
T 4e54_B 279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP-HPHRHFQHLTPIKAAWHPRYN 357 (435)
T ss_dssp ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC-CCCCCCSSSCCCBCEECSSSS
T ss_pred ecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec-ccccccccceeEEEEEcCCCC
Confidence 998865433 3357999999999999999999999999999999998776655532 21 1234567888888
Q ss_pred EEEEEEc------------CCeEEEEEcCCceeecccccccCcccccceEEE-EEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 500 WLAAQSL------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 500 ~l~s~s~------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
++++++. ++.|++||..++..+... ..+| ...|.++ +|+|+|++|++|+ |+.|+||++++++
T Consensus 358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 7777653 357999999887655332 2233 2345555 7999999999886 7899999999887
Q ss_pred eE
Q 007431 567 VF 568 (604)
Q Consensus 567 ~~ 568 (604)
..
T Consensus 433 ~r 434 (435)
T 4e54_B 433 TR 434 (435)
T ss_dssp --
T ss_pred ee
Confidence 54
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.1e-29 Score=257.25 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=203.9
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc----EEEEeeCCCcceEEEEccCCCCCc-EEEEEEcCCeE
Q 007431 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKI 425 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~-~lvsg~~dg~I 425 (604)
....+|...|++++|+|++++|++++.|+.|+|||+.++. ..........+.++.+.++ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeE
Confidence 3346899999999999999999999999999999999887 5555555666778888875 37 89999999999
Q ss_pred EEEeC-CCCceEEEEcC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---------CeEEEEeecCCCCcccEEE
Q 007431 426 VQWDM-NTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---------PVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 426 ~iwD~-~s~~~~~~~~~--h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~---------~~~~~~~~~~~~~~v~~l~ 493 (604)
++||+ .+++. ..+.. |...|.+++|+| +.+|++++.|+.|++||++. ...+..+ .+...+.+++
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~ 157 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMD 157 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEE
Confidence 99999 87755 67778 999999999999 99999999999999999876 4444433 3778899999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCC------
Q 007431 494 LHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC------ 565 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~t~------ 565 (604)
|+|++ |++++.|+.|++||++. ...... .....+ ...+.+++|+| ++++|++|+.+|.|++|++...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccce-eeecCC--CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99887 99999999999999987 432111 111222 45688999999 9999999999999999999887
Q ss_pred eeEEEEecCCC---------cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 566 KVFRTLKCHEG---------VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 566 ~~~~~l~~h~~---------~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+....+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEc
Confidence 88888998865 999999999 778999999999999997
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.5e-28 Score=261.77 Aligned_cols=265 Identities=19% Similarity=0.393 Sum_probs=204.0
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 381 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I 381 (604)
..+++.++.+|...|++++| + +.+|++|+.||+|++||+ .+++++..+.+|...|.+++|+ +..|++|+.||.|
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i 235 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSI 235 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEES-SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCE
T ss_pred CCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEEC-CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcE
Confidence 45678899999999999999 4 789999999999999999 6788999999999999999996 4599999999999
Q ss_pred EEEECCCCcEEE--EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007431 382 KYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 382 ~vWD~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
++||+.++..+. ....++...+.++.++ +.++++|+.||.|++||+++++.+..+.+|...|.++.+. +++|+
T Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 310 (435)
T 1p22_A 236 AVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 310 (435)
T ss_dssp EEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEE
T ss_pred EEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEE
Confidence 999999887552 2223343344444442 3689999999999999999999999999999999999994 67999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec------ccccccCcccc
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN------KKKRFAGHIVA 533 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~------~~~~~~~~~~~ 533 (604)
+|+.||.|++||++++..+..+. .|...|.++++ ++.+|++++.||.|++||+....... ....+.+| .
T Consensus 311 ~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~ 385 (435)
T 1p22_A 311 SGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--S 385 (435)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--S
T ss_pred EEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--C
Confidence 99999999999999998887775 58889999998 78899999999999999987543110 22334555 4
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
..|.+++| ++.+|++|+.||.|++||+.+........ ...+..++.|.+
T Consensus 386 ~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 386 GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp SCCCCEEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 56778888 78899999999999999998876554443 233445555543
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.8e-27 Score=246.43 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=216.5
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEE-EEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCc
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 380 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~ 380 (604)
.++++.+.+|.. +.+++|+|+ +.+| ++++.|+.|++||+ .+++++..+..|. .|.+++|+|++++|++++ .++.
T Consensus 22 ~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~d~~i~v~d~-~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 22 NKVTATIPVGSN-PMGAVISPD-GTKVYVANAHSNDVSIIDT-ATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TEEEEEEECSSS-EEEEEECTT-SSEEEEEEGGGTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred CeEEEEeecCCC-cceEEECCC-CCEEEEECCCCCeEEEEEC-CCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence 366777887765 899999999 6655 77779999999999 6788888887665 899999999999886555 6799
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-E
Q 007431 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-V 459 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l-~ 459 (604)
|++||+.+++.+..+..+..+..+.+.+++. .++++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| +
T Consensus 98 v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTGKSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred EEEEECCCCeEEEEEeCCCCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEE
Confidence 9999999999999988887788888887542 45578888999999999999988888765 456999999999887 6
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccce
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
+++.++.|++||+++......+. +...+.+++|+|++++|++++ .++.|++||+.++..+... ..+ ..+
T Consensus 175 ~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~---~~~---~~~ 246 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI---PVG---PDP 246 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE---ECC---SSE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE---ecC---CCc
Confidence 77889999999999998877764 456789999999999999988 6899999999887654332 223 246
Q ss_pred EEEEEcCCCCEE-EEEcCCCcEEEEeCCCCeeEEEEecCCCc
Q 007431 537 CQVNFSPDGRFV-MSGDGEGKCWFWDWKSCKVFRTLKCHEGV 577 (604)
Q Consensus 537 ~~l~~spdg~~L-~sgs~dG~I~iwd~~t~~~~~~l~~h~~~ 577 (604)
.+++|+|+|++| ++++.++.|++||+.+++++..+..|..+
T Consensus 247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 789999999988 57788999999999999999999877654
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=4.5e-28 Score=248.07 Aligned_cols=296 Identities=15% Similarity=0.242 Sum_probs=209.6
Q ss_pred CCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCC-CCCEEEEEECCCcEE
Q 007431 261 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVK 339 (604)
Q Consensus 261 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~I~ 339 (604)
.....+.+...+......|...|.|-..... ...+++..+.+|...|++++|+|. ++.+|++|+.||.|+
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSS---------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 3334455556666777788889998664321 123577889999999999999994 289999999999999
Q ss_pred EEecCCCC---------eeeEEecCCCCceeeEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEee------------
Q 007431 340 IWDVVNSG---------KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFS------------ 396 (604)
Q Consensus 340 IWd~~~~~---------~~~~~~~~h~~~V~~l~fspd--g~~L~s~s~Dg~I~vWD~~t~~~i~~~~------------ 396 (604)
|||+. .+ +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 85 vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEED-PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEC-TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecC-CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99994 43 668888999999999999999 9999999999999999999876543322
Q ss_pred --CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce--EEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEE
Q 007431 397 --TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 468 (604)
Q Consensus 397 --~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~--~~~~~~h~~~V~~i~~sp~~----~~l~sgs~Dg~I~ 468 (604)
......++.+.+......++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ ++|++++.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 234456788887644568999999999999998888765 67778899999999999998 8999999999999
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007431 469 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
+||++.......... ....+......+....+..+..+ ..+.+|+. ........+.+| ...|.+++|+|+
T Consensus 244 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h--~~~v~~~~~s~~ 317 (351)
T 3f3f_A 244 IFKITEKLSPLASEE-SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN---LQVELLSEHDDH--NGEVWSVSWNLT 317 (351)
T ss_dssp EEEEEECC----------------------------------------CCS---EEEEEEEEECTT--SSCEEEEEECSS
T ss_pred EEeCCCCcCccccCC-cccceeccCCCcccccccccccccccceeeeeccc---ccccEEEEEecc--cccEEEEEEcCC
Confidence 999987654433321 22233333344444444443322 33333333 233334455566 567999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 545 GRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 545 g~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
+++|++|+.||.|+||++.+++.+..+.
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CCEEEEecCCCcEEEEecCcCcchhhee
Confidence 9999999999999999999876555443
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-29 Score=269.91 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=209.7
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007431 310 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
+.-...|.+|+|+|+ |+++||++.|++|+ |. ..+++ +.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-cccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 345688999999999 99999999999999 75 44444 37999999999999998 4566666654322
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC-----ceeEEEEeCCCCEEEEEeCC
Q 007431 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-----AVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~-----~V~~i~~sp~~~~l~sgs~D 464 (604)
. +..+.....+.++.|+|++ ..|++++.||.|++||... ++..+. |.. .|.+++|+|+|++|++|+.|
T Consensus 78 ~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 78 G-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp C-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred e-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 2 2222234456677777754 6799999999999999644 666666 665 49999999999999999999
Q ss_pred CcEEEEECCCCe-------EEEEee---cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cCcccc
Q 007431 465 KSLRVWEFGIPV-------VIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVA 533 (604)
Q Consensus 465 g~I~iwdl~~~~-------~~~~~~---~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~ 533 (604)
|+|++||+..+. .+..+. .+|...|.+++|+|+| +++++.|+.|++|++..+........+ .+| .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--R 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--S
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--c
Confidence 999999998874 345542 4577899999999999 889999999999999876532111223 234 3
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEE--ecCCCCEEEEEeCCCcEEEeC
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW--HPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~--sp~~~~~l~tgg~DG~I~vWD 604 (604)
..|.+++|+ |++|++++ +|.|++||+.+++......+|...|.+++| +| ++..|++++.||+ ++|.
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEE
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEe
Confidence 568889999 68999997 699999999998885555489999999999 99 6789999999999 9883
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.4e-27 Score=240.01 Aligned_cols=262 Identities=20% Similarity=0.327 Sum_probs=211.1
Q ss_pred cccccceeecCCCccccCCCCcccCcceeEEe--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC
Q 007431 278 TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 355 (604)
Q Consensus 278 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl--~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~ 355 (604)
.|..+|.|-. ...++++++ .+|...|++|+|+|+ +++|++|+.||+|+||++ .++++++.+.+
T Consensus 43 ~D~tV~iWd~-------------~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~~~~~~~ 107 (318)
T 4ggc_A 43 LDNSVYLWSA-------------SSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 107 (318)
T ss_dssp ETTEEEEEET-------------TTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEEC
T ss_pred eCCEEEEEEC-------------CCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCceeEEEecC
Confidence 3666777743 233555555 468889999999999 999999999999999999 78899999999
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE-EEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007431 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i-~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
|...+.++.+ ++..|++++.++.+++|+....... ..+..+ .....+.+.+. +.++++++.|+.|++||++++
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD---GRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEESSCB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC---CCEEEEEecCcceeEEECCCC
Confidence 9998877655 5679999999999999999877544 333332 23344455543 368999999999999999886
Q ss_pred c----eEEEEcCcCCceeEEEEeCCCCEE---EEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-
Q 007431 434 E----ITQEYDQHLGAVNTITFVDSNRRF---VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 505 (604)
Q Consensus 434 ~----~~~~~~~h~~~V~~i~~sp~~~~l---~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s- 505 (604)
+ .......|.+.|.++.++|.+..+ ++++.++.|++||........... +...+..+.++|.+..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEE
Confidence 5 345566788999999999876643 456788999999999888776653 667899999999999888776
Q ss_pred -cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 506 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 506 -~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....
T Consensus 261 ~~d~~i~iwd~~~~~~~---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7899999999987665 445677 5789999999999999999999999999987643
No 114
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=5.6e-27 Score=245.91 Aligned_cols=272 Identities=11% Similarity=0.033 Sum_probs=205.5
Q ss_pred ccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEE-----------ECCCcEEEEecCCCC
Q 007431 279 DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA-----------GMDTKVKIWDVVNSG 347 (604)
Q Consensus 279 d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sg-----------s~Dg~I~IWd~~~~~ 347 (604)
+...|.|........... .+.......|.+|...|.++++++ ..+++| +.|+.+++|++....
T Consensus 42 ~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp CEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTT
T ss_pred CCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCC
Confidence 345688866544321100 011122346789999999998764 466665 357889999984433
Q ss_pred eeeEE---e-----cCCCCceeeEEEccCCCEEEEEE--CCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEE
Q 007431 348 KCMRT---Y-----MGHSKAVRDISFCNDGTKFLTAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL 417 (604)
Q Consensus 348 ~~~~~---~-----~~h~~~V~~l~fspdg~~L~s~s--~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lv 417 (604)
..+.. . ..+...+++++|+|||++|++++ .|++|+|||+.+++++..+.....+..+.|+|++ .+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg---~~l~ 192 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG---KVVA 192 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS---SEEE
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC---ceEE
Confidence 32222 1 13445689999999999987654 6899999999999999999888888899998865 5677
Q ss_pred EEEcCCeEEEEeCCCCceEEE--EcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCeEEE---EeecCCCCc
Q 007431 418 AGMSDKKIVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVVIK---YISEPHMHS 488 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~~~~--~~~h~~~V~~i~~sp~~~~l~sgs~Dg----~I~iwdl~~~~~~~---~~~~~~~~~ 488 (604)
+++ ++.+++|+..++..+.. ...|...|.+++|+|+++++++++.|+ .+++|++....... .....|...
T Consensus 193 s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 193 YIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG 271 (365)
T ss_dssp EEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred ecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence 766 55677777777766543 356888999999999999999999887 58889987664321 222357889
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 489 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 489 v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
|.+++|+|+|++||+|+.|+.|+|||+.++..+.. .+.+| ...|++++|||||++|++|+.|++|+|||+..
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999998765532 23566 57799999999999999999999999999964
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.8e-27 Score=239.18 Aligned_cols=288 Identities=14% Similarity=0.142 Sum_probs=193.7
Q ss_pred ceeEEecCCCCC----eEEEEEcCCCC-C-EEEEEECCCcEEEEecCCCC---eeeEEecCCCCceeeEEEccCCCEEEE
Q 007431 304 RLVHTWSGHTKG----VSAIRFFPKYG-H-LILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 304 ~~i~tl~gH~~~----V~~l~fsp~~g-~-~L~sgs~Dg~I~IWd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
+++..|+.-.+. |.++.|-..+. . .+++++ ...|++|+. .+. +.++++.+|..+|..|.|.||-.-|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKA-LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEE-SSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEccc-CCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 455566554433 55666655422 2 455555 578999999 456 788999999888877777774333332
Q ss_pred EECC----CcEEEEECCC-----CcEEEEeeCCCcceEEEEccCCCCCcEEEEEE--cCCeEEEEeC-CCCceEEEEcCc
Q 007431 375 ASYD----KNIKYWDTET-----GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDM-NTKEITQEYDQH 442 (604)
Q Consensus 375 ~s~D----g~I~vWD~~t-----~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~-~s~~~~~~~~~h 442 (604)
.... +.|+..-+.. ++.+.. .++...+..+ ..++++.+++ .|+.|++|++ .+++.+..+..|
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s--~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLK--SGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEE--EEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeccccccceEEEEECCCccccccEEEe--CCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 2210 0011000000 000000 1111112222 1234444433 5999999999 558888888899
Q ss_pred CCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCeEEEEeecCC--CCcccEEEEcCCCCEE------------EEEE
Q 007431 443 LGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWL------------AAQS 505 (604)
Q Consensus 443 ~~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l------------~s~s 505 (604)
...++.++|++ ++.+|++++.|++|+|||+.+++.++.+...+ ...+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 77999999999999999999999999986433 2367778999999876 5678
Q ss_pred cCCeEEEEEcCCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEE-EEE
Q 007431 506 LDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI-GCE 582 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~-~v~ 582 (604)
.|++|++||..++..+..... ..+|. ..+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. .++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 899999999988765532210 12442 22323333 488999999999999999999999999999987655 589
Q ss_pred EecCCCCEEEEEeCCCcEEEeC
Q 007431 583 WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 ~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+| ++.+|++|+.|++|+|||
T Consensus 334 fSP-DG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSG-TDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECS-SSSEEEEECTTSCEEEEE
T ss_pred ECC-CCCEEEEEECCCcEEEec
Confidence 999 788999999999999997
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=283.01 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=204.8
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC--CCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEE
Q 007431 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~--t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+..+ ..+.++.|.+.. ++.+|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEE
Confidence 35678999999999999999999999999999999998 44566666543 345567776652 247899999999999
Q ss_pred EEeCCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcC-----
Q 007431 427 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHP----- 496 (604)
Q Consensus 427 iwD~~s~~--~~~~~~~h~~~V~~i~~sp~--~~~l~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp----- 496 (604)
+||+.+++ .+..+..|...|++++|+|+ ++.|++|+.||.|++||++.... .......|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999986 77788899999999999999 99999999999999999987622 1222246888999999999
Q ss_pred --------CCCEEEEEEcCCeEEEEEcCCceee-cccccccCcccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCC
Q 007431 497 --------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 497 --------~g~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~spd---g~~L~sgs~dG~I~iwd~~t 564 (604)
++.+|++++.||.|++||+++.... .....+.+| ...|.+++|+|+ +.+|++|+.||.|++||+.+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999875322 223345555 577999999999 99999999999999999988
Q ss_pred Ce-----eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 565 CK-----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 565 ~~-----~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+. .+.....|.+.|.+++|+| ++.+|++|+.||.|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCB
T ss_pred CCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEe
Confidence 64 3333345888999999999 778999999999999997
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.5e-27 Score=249.20 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=185.2
Q ss_pred EEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEE
Q 007431 340 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 419 (604)
Q Consensus 340 IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg 419 (604)
||++ ....++..+..|...|++++|+|+|++|++|+.++ ++||++.+++.+...... ...++.+.+... .++++|
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 77 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTN--YVAFVT 77 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSS--EEEEEC
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCC--EEEEEE
Confidence 4555 45667777889999999999999999999988765 789999988877665443 355666666542 455778
Q ss_pred EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCC
Q 007431 420 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNT 498 (604)
Q Consensus 420 ~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g 498 (604)
+.|+.|++||+.+++.+..+. |...|.++.++++. ++++. ++.|++||+... ..+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE----EEEEEEEET--
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc----CCceEEEEc--
Confidence 889999999999999998886 67799999998753 44443 789999999887 54444332 444566676
Q ss_pred CEEEE--EEcCCeEEEEEcCCceee------------cc-cccccCcccccceEEEEEcCCCCEEEEEcCCCc-EEEEeC
Q 007431 499 NWLAA--QSLDNQILIYSTRERFQL------------NK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDW 562 (604)
Q Consensus 499 ~~l~s--~s~Dg~I~iwd~~~~~~~------------~~-~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~-I~iwd~ 562 (604)
.++++ ++.+|.|++||+.+.... .. ...+.+| ...|.+++|+|+|++|++|+.||+ |++||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66666 578999999999875311 11 3456666 577999999999999999999998 999999
Q ss_pred CCCeeEEEEe-c-CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 563 KSCKVFRTLK-C-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 563 ~t~~~~~~l~-~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++++..+. + |...|.+++|+| ++.+|++++.||+|+|||
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 9999999998 5 999999999999 788999999999999997
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=5.2e-27 Score=243.00 Aligned_cols=276 Identities=14% Similarity=0.222 Sum_probs=217.5
Q ss_pred CCccccCc---ceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 007431 262 KGEHVEDK---STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 338 (604)
Q Consensus 262 ~~~~~~~~---s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 338 (604)
....+.+. ..+......|...+.|-.... ...+...+.+|...|++++|+|+ +++|++|+.||.|
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v 110 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-----------GQTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKTA 110 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECTT-----------SCEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-----------CceeEEEeccccCCEEEEEECcC-CCEEEEEcCCCcE
Confidence 33445554 356667777888888865431 12344788999999999999998 9999999999999
Q ss_pred EEEecCCCCeeeEEecCCCCceeeEEE--ccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEE
Q 007431 339 KIWDVVNSGKCMRTYMGHSKAVRDISF--CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 339 ~IWd~~~~~~~~~~~~~h~~~V~~l~f--spdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l 416 (604)
++||+ ..++.+. +.+|...|++++| ++++.+|++++.||.|++||+.+++.+..+.......++.+.. ..+
T Consensus 111 ~iwd~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 183 (368)
T 3mmy_A 111 KMWDL-SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-----PMA 183 (368)
T ss_dssp EEEET-TTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET-----TEE
T ss_pred EEEEc-CCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC-----Cee
Confidence 99999 5666555 5679999999999 8899999999999999999999999998888776655555553 468
Q ss_pred EEEEcCCeEEEEeCCCCceEEEE--cCcCCceeEEEEeCCCCE----EEEEeCCCcEEEEECCCC---eEEEEeecCCCC
Q 007431 417 LAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRR----FVTSSDDKSLRVWEFGIP---VVIKYISEPHMH 487 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~~~~~~--~~h~~~V~~i~~sp~~~~----l~sgs~Dg~I~iwdl~~~---~~~~~~~~~~~~ 487 (604)
++++.++.+.+|+++........ ..+...+.++.+.++... +++++.||.|++||++.. .....+. .|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~ 262 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHRS 262 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSEE
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eeec
Confidence 99999999999999887544333 234456677777766554 999999999999999876 3333332 2333
Q ss_pred ------------cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007431 488 ------------SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 488 ------------~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
.|.+++|+|++++|++++.||.|++||+.++..+. .+.+| ...+.+++|+|+|++|++|+.|+
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~--~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQL--DQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCC--SSCEEEEEECTTSSCEEEEECCC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCC--CCCceEEEECCCCCeEEEEeccc
Confidence 69999999999999999999999999999876653 33444 56789999999999999999988
Q ss_pred cEEEEeC
Q 007431 556 KCWFWDW 562 (604)
Q Consensus 556 ~I~iwd~ 562 (604)
..+.|++
T Consensus 338 ~~~~~~~ 344 (368)
T 3mmy_A 338 WSKGHEF 344 (368)
T ss_dssp STTCGGG
T ss_pred ccccccc
Confidence 6555544
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.3e-27 Score=253.18 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=176.9
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee-----eEEecCCCCceeeEEEcc--------CCCEEEEEE
Q 007431 310 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-----MRTYMGHSKAVRDISFCN--------DGTKFLTAS 376 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~-----~~~~~~h~~~V~~l~fsp--------dg~~L~s~s 376 (604)
..|...+....+.++ +.+|++|+.|++|+|||+. .+.+ +..+.+|.+.|++|+|+| ++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp C----------CCEE-EEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccCCCcceeecCCC-CCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 345555555555555 7899999999999999994 4433 234679999999999998 789999999
Q ss_pred CCCcEEEEECCCCcEEEEe-eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-----------------
Q 007431 377 YDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----------------- 438 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~----------------- 438 (604)
.|++|+|||+.++.++..+ .....+.+++|+|.+ .++|++|+.|+.|++||+++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999999999887765544 455666788888754 36899999999999999998764332
Q ss_pred --------EcCcCCceeEEEEe-CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007431 439 --------YDQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 509 (604)
Q Consensus 439 --------~~~h~~~V~~i~~s-p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~ 509 (604)
..+|...|.++.|+ ++++.|++++.|+++++||+........+. .+...+..+.+.|+...+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~------ 314 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISL------ 314 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECS------
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccc------
Confidence 23577889999997 789999999999999999998776655543 24444555555444321100
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCC
Q 007431 510 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 587 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 587 (604)
+ .......|+| ++.++++|+.||.|+|||+.+++++..+..|..+|.+++|+| +
T Consensus 315 --------------------~---~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-d 370 (393)
T 4gq1_A 315 --------------------F---PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-D 370 (393)
T ss_dssp --------------------S---CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-T
T ss_pred --------------------c---CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-C
Confidence 0 1111233444 455778899999999999999999988889999999999999 7
Q ss_pred CCEEEEEeCCCcE
Q 007431 588 QSKVATCGWDGLI 600 (604)
Q Consensus 588 ~~~l~tgg~DG~I 600 (604)
+++||+++.+|.+
T Consensus 371 G~~LA~as~~Gv~ 383 (393)
T 4gq1_A 371 GSHLAIATEGSVL 383 (393)
T ss_dssp SSEEEEEESSEEE
T ss_pred CCEEEEEeCCCeE
Confidence 8899999988763
No 120
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=9e-28 Score=246.55 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=192.3
Q ss_pred CCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCC-CCCEEEEEECCCc
Q 007431 259 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTK 337 (604)
Q Consensus 259 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~ 337 (604)
+......+.....+..+...|...|.|-.... ...++.++.+|.+.|++|+|+|. .+.+|++|+.|++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 33444455666667788888999999954321 11357889999999999999863 3789999999999
Q ss_pred EEEEecCCCC--eeeEEecCCCCceeeEEEccC--CCEEEEEECCCcEEEEECCCCcEEE---EeeC-CCcceEEEEccC
Q 007431 338 VKIWDVVNSG--KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIR---TFST-GKIPYVVKLNPD 409 (604)
Q Consensus 338 I~IWd~~~~~--~~~~~~~~h~~~V~~l~fspd--g~~L~s~s~Dg~I~vWD~~t~~~i~---~~~~-~~~~~~~~~~~~ 409 (604)
|+|||+. .+ ..+..+.+|...|++++|+|+ +.+|++|+.|+.|++||+..+.... .+.. .....++.|.+.
T Consensus 83 v~iWd~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 83 VIIWREE-NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp EEEECCS-SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred EEEEECC-CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 9999994 44 466778899999999999997 7899999999999999998764321 1211 123345666664
Q ss_pred CC--------------CCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEE
Q 007431 410 DD--------------KQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 468 (604)
Q Consensus 410 ~~--------------~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~~----~~l~sgs~Dg~I~ 468 (604)
.. ...+|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 21 1357999999999999999765 4667788999999999999986 7899999999999
Q ss_pred EEECCCC---e-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007431 469 VWEFGIP---V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 469 iwdl~~~---~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
+|++... . ....+ ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 242 iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9998762 1 11112 2467889999999999999999999999999975
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-27 Score=246.91 Aligned_cols=228 Identities=12% Similarity=0.096 Sum_probs=181.1
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC---------CCc
Q 007431 364 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---------TKE 434 (604)
Q Consensus 364 ~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---------s~~ 434 (604)
.+.+++.+|++|+.||.|++||+.+++.+..+.. ..+..+.+.+. +++++.|+.|++|+.. +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 3446788999999999999999999998887762 22222233332 8999999999999665 555
Q ss_pred eEEEEc-CcCCceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007431 435 ITQEYD-QHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 511 (604)
Q Consensus 435 ~~~~~~-~h~~~V~~i~~sp--~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~ 511 (604)
.+..+. .|.+.|.+++|+| ++++|++++.||+|++||++++.........+...+.+++|+|++.+|++|+.|+.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 455544 6778999999999 9999999999999999999999887666555667899999999999999999999999
Q ss_pred EEEcCCceeecccccccC-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCcEE--EEEEec
Q 007431 512 IYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCI--GCEWHP 585 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~~V~--~v~~sp 585 (604)
+||++++.... ..+.+ | ...|.+++|+|+|.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|
T Consensus 196 iwd~~~~~~~~--~~~~~~h--~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 196 VYNLSSPDQAS--SRFPVDE--EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp EEESSCTTSCC--EECCCCT--TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred EEECCCCCCCc--cEEeccC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence 99998875431 22333 4 57899999999999999999 55999999999877655443 334443 699999
Q ss_pred CCCCEEEEEeC-CCcEEEeC
Q 007431 586 LEQSKVATCGW-DGLIKYWD 604 (604)
Q Consensus 586 ~~~~~l~tgg~-DG~I~vWD 604 (604)
++.+|++++. |+.|+||+
T Consensus 271 -~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 271 -SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp -TSSEEEEEETTTTEEEEEE
T ss_pred -CCCEEEEecCCCCcEEEEE
Confidence 7889999998 99999995
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.6e-26 Score=244.74 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=200.0
Q ss_pred EecCCCCCeEEEEEcCCCCCEE-EEEECCCcEEEEecCC-CCeeeEEec--CCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007431 308 TWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVN-SGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~IWd~~~-~~~~~~~~~--~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
...+|.+.|++++|+|+ +.+| ++|+.||.|+||++.. .+.++..+. .|...|.+++|+|++++|++++.+|.|++
T Consensus 97 ~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ---CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 34588999999999999 7775 8999999999999931 677777776 67789999999999999999999999999
Q ss_pred EECCCCcEEE----Eee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCE
Q 007431 384 WDTETGQVIR----TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 384 WD~~t~~~i~----~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~~~ 457 (604)
|++.++.... .+. ....+.++.|+++...+.+|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 9998876543 333 234567788888622247899999999999999999988877 55899999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeec------------------------CCCCcccEEEEcCCCCEEEEEE-cCCeEEE
Q 007431 458 FVTSSDDKSLRVWEFGIPVVIKYISE------------------------PHMHSMPSISLHPNTNWLAAQS-LDNQILI 512 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~------------------------~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~i 512 (604)
|++++.|+.|++||+.++..+..+.. .....+.+++|+|++++|++++ .++.|++
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 99999999999999999988777642 2235688999999999999999 8999999
Q ss_pred EEc--CCceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCC
Q 007431 513 YST--RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWK 563 (604)
Q Consensus 513 wd~--~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~------dG~I~iwd~~ 563 (604)
|++ .....+.....+.++ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 335 w~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 335 LEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999 544333334445554 56889999996544444332 4457888654
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.8e-27 Score=252.46 Aligned_cols=288 Identities=9% Similarity=0.056 Sum_probs=218.4
Q ss_pred CCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 007431 261 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 340 (604)
Q Consensus 261 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~I 340 (604)
.......+...+.++...|..+|. +. ....+.||...|.+++|+|+ | .++.+.+
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~d----~~--------------~~~~l~gh~~~v~~V~FsPd-g-------~~~~~~~ 71 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIGQ----PK--------------YAKDINCNSKNLFHVKEFPL-E-------FENKLDF 71 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEEE----EC--------------CCSCCSSBGGGTEEEEEECC-C-------CCCTTTT
T ss_pred EEEEEECCCCCEEEEEcCCceeec----cc--------------ccceecCCCccEEEEEECCC-C-------CcceEEE
Confidence 344556677777777777877771 11 11233799999999999999 5 5666666
Q ss_pred EecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc------ceEEEEccCCCCCc
Q 007431 341 WDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQN 414 (604)
Q Consensus 341 Wd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~------~~~~~~~~~~~~~~ 414 (604)
|+. .+..+..+ .|...|.+++|||+|.+|++++.||.|+|||..+ ++..+. ++. ..+++|+|++ .
T Consensus 72 ~~~--~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG---~ 142 (588)
T 2j04_A 72 ELA--QQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE---S 142 (588)
T ss_dssp SCC--CSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS---S
T ss_pred EeC--CCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC---C
Confidence 664 22222222 5688999999999999999999999999999654 666666 442 6678888755 6
Q ss_pred EEEEEEcCCeEEEEeCCCCce-------EEEE----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE---EEE
Q 007431 415 ILLAGMSDKKIVQWDMNTKEI-------TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKY 480 (604)
Q Consensus 415 ~lvsg~~dg~I~iwD~~s~~~-------~~~~----~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~---~~~ 480 (604)
+|++|+.||.|++||+.++.. +..+ .+|...|.+++|+|++ +++++.|++|++||+..... ...
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 899999999999999998853 6676 6778899999999999 88899999999999987763 344
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE--cCCCCEEEEEcCCCcEE
Q 007431 481 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF--SPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~L~sgs~dG~I~ 558 (604)
+...|...|.+++|+ +..|++++ ++.|++|++.++..... ..+| ...+..++| +|++..|++++.+|. +
T Consensus 221 L~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~---~~gh--~~~V~~va~~~s~d~~~La~a~edG~-k 291 (588)
T 2j04_A 221 IQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL---KTGS--LENFHIIPLNHEKESTILLMSNKTSY-K 291 (588)
T ss_dssp EECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE---ECSC--CSCCCEEEETTCSSCEEEEECSSCEE-E
T ss_pred ecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE---EcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-E
Confidence 544678899999999 68888887 79999999987655321 1145 466778999 999999999999999 9
Q ss_pred EEeCCCC-----------------------eeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007431 559 FWDWKSC-----------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 559 iwd~~t~-----------------------~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
+|....- ..+..+. +...|.+++|+| ++..+|+++.
T Consensus 292 lw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 292 VLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECC-CCCEEEEEEe
Confidence 9986421 1111111 133589999999 7788988874
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3.7e-24 Score=228.18 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=205.2
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEEEC
Q 007431 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDT 386 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~ 386 (604)
.+.+|...|.+++|+|+ +.++++++.|+.|++||+ ..++.+..+..|...+.+++|+|+++++++++ .|+.|++||+
T Consensus 164 ~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 164 KYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp HHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cccccCCceeEEEEcCC-CEEEEEECCCCEEEEEEC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 45689999999999998 899999999999999999 67788888889999999999999999886555 7999999999
Q ss_pred CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEE--------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-
Q 007431 387 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR- 457 (604)
Q Consensus 387 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~--------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~- 457 (604)
.+++.+..+.....+..+.+.+++ ..+++++ .|+.|++||+++++.+..+ .|...+.+++|+|+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g---~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKIGLPRGLLLSKDG---KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCCSEEEEEEECTTS---SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCCCCceEEEEcCCC---CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999999988877777778887754 4666666 5889999999999877766 46668999999999975
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc---------------CCeEEEEEcCCceeec
Q 007431 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---------------DNQILIYSTRERFQLN 522 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~---------------Dg~I~iwd~~~~~~~~ 522 (604)
+++++.++.|++||+.+......+. +...+.+++|+|++++|++++. ||.|++||+.++....
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred EEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 4666899999999999988877764 5677899999999999998887 5699999998876554
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCC
Q 007431 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKS 564 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG~I~iwd~~t 564 (604)
... . ...+..++|+|+|++|++++. ++.|++|++..
T Consensus 396 ~~~---~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 396 FWE---A---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEE---C---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred Eec---C---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 332 2 245778999999999988765 99999999764
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.7e-23 Score=231.00 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=220.3
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC-CCCeeeEEecCCCCceeeEEEcc----CCCEEEEEE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFCN----DGTKFLTAS 376 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~-~~~~~~~~~~~h~~~V~~l~fsp----dg~~L~s~s 376 (604)
..+++.++..+.. +.+++|+|+ +++|++++.|++|.+||+. .+++++.++. +...+..++|+| +|++|++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEE
Confidence 3467788873333 899999999 9999999999999999993 3567788877 456689999999 999999988
Q ss_pred C-CCcEEEEECCCCcEEEEeeCCC------------cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE--EEcC
Q 007431 377 Y-DKNIKYWDTETGQVIRTFSTGK------------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQ 441 (604)
Q Consensus 377 ~-Dg~I~vWD~~t~~~i~~~~~~~------------~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~--~~~~ 441 (604)
. +++|.|||..+++++..+.... .+..+.++++ +..++++...++.|.+||+.+.+.+. .+ .
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~--~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~ 321 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G 321 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS--SSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC--CCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence 5 8999999999999999886521 2334555553 44778888889999999998865433 44 3
Q ss_pred cCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCeEEEEeecC---CCCcccEEEEcCC-CCEEEEEE-cCCeEEEEEc
Q 007431 442 HLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPN-TNWLAAQS-LDNQILIYST 515 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sg-s~Dg~I~iwdl~~~~~~~~~~~~---~~~~v~~l~~sp~-g~~l~s~s-~Dg~I~iwd~ 515 (604)
+...+.++.|+|++++|+++ ..+++|.+||+.+++++..+... |......+ ++|+ +.+++++. .|++|.+|++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 56678899999999987655 46889999999999988877532 43333333 4777 55555554 5799999999
Q ss_pred CCcee----ecccccccCcccccceEEEEEcCCCCEEEEEc-------CCCcEEEEeCCCCeeE-EEE--------ecCC
Q 007431 516 RERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-------GEGKCWFWDWKSCKVF-RTL--------KCHE 575 (604)
Q Consensus 516 ~~~~~----~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-------~dG~I~iwd~~t~~~~-~~l--------~~h~ 575 (604)
.+... ......+.++ ...+..+.++|+|++|++++ .++.|.+||+.+++.. ..+ ..+.
T Consensus 401 ~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp CTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 87211 2223344444 24455699999999999987 2679999999999877 554 3457
Q ss_pred CcEEEEEEecCCCCEEEEEe-----CCCcEEEeC
Q 007431 576 GVCIGCEWHPLEQSKVATCG-----WDGLIKYWD 604 (604)
Q Consensus 576 ~~V~~v~~sp~~~~~l~tgg-----~DG~I~vWD 604 (604)
..+..+.|+|+ +..|+.+. .|+.|.|||
T Consensus 479 ~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 479 KRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEE
T ss_pred CceEeccCCCC-CCEEEEEeecCCCCCCeEEEEE
Confidence 78999999995 55555442 479999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=9.8e-24 Score=225.18 Aligned_cols=264 Identities=11% Similarity=0.110 Sum_probs=207.3
Q ss_pred EEecCCCCCeEEEEEcCC-------------CCCEEEEEECC------CcEEEEecCCCCeeeEEecCCCCceeeEEEcc
Q 007431 307 HTWSGHTKGVSAIRFFPK-------------YGHLILSAGMD------TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN 367 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~-------------~g~~L~sgs~D------g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp 367 (604)
.++.+|...+.++++++. .+..|+.++.+ +.|++||+ .+...+.+.+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~--~g~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY--DGYNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET--TSCSCEEEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC--CCCCCEEEeCCCCcceeeEEcC
Confidence 568899999988888751 03455555443 79999998 3556778888999999999999
Q ss_pred CCCEEEEEECCC---cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCc
Q 007431 368 DGTKFLTASYDK---NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQH 442 (604)
Q Consensus 368 dg~~L~s~s~Dg---~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h 442 (604)
+|++|++++.++ .|++||+.++++............+.|+|++. .++++++.++ .|++||+.+++. ..+..|
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 265 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI-RQVTDG 265 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence 999999999885 99999999998876554455566778887543 3444666655 499999998876 566778
Q ss_pred CCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcC
Q 007431 443 LGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 516 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~ 516 (604)
...+.++.|+|++++|++++. ++ .|++||+..+.... +. .+...+.+++|+|+|++|++++.+ ..|.+||+.
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 889999999999999998886 44 67788988776432 22 355678899999999999998875 589999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG---~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
++... .+..+ ..+..++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|
T Consensus 344 ~~~~~----~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 344 TGGVQ----VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp TCCEE----ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred CCCEE----EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 76542 12223 2677899999999999888776 79999986 566778889999999999999
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.7e-23 Score=213.14 Aligned_cols=179 Identities=11% Similarity=0.129 Sum_probs=142.6
Q ss_pred CCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc---CCCEEEEEECCCcEEEEECCCCcEEEEeeCCC----cceEEEE
Q 007431 334 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL 406 (604)
Q Consensus 334 ~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp---dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~----~~~~~~~ 406 (604)
.|+.|++|++..+++.+..+.+|...++.++|++ ++.+|++++.|++|+|||+.+|+++.++..++ ....+.|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 3999999999777888888999999999999999 77999999999999999999999999997543 2334567
Q ss_pred ccCCC---------CCcEEEEEEcCCeEEEEeCCCCceEEEE-----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007431 407 NPDDD---------KQNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 472 (604)
Q Consensus 407 ~~~~~---------~~~~lvsg~~dg~I~iwD~~s~~~~~~~-----~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl 472 (604)
+|++. ....+++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 76432 0012467889999999999999887765 4676665555544 789999999999999999
Q ss_pred CCCeEEEEeecCCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007431 473 GIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 473 ~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
.+++.+..+. +|... +.+++|+|+|++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999998875 45554 456899999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=2.5e-23 Score=229.59 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=217.8
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC--CCCcEEEEeeCC
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT--ETGQVIRTFSTG 398 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~--~t~~~i~~~~~~ 398 (604)
|+|+ +.++++++.|++|.+||. .+++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++++..+..+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 6787 789999999999999999 68888888874333 899999999999999999999999999 899999999888
Q ss_pred CcceEEEEcc----CCCCCcEEEEEE-cCCeEEEEeCCCCceEEEEcCc----------C-CceeEEEEeCCCCE-EEEE
Q 007431 399 KIPYVVKLNP----DDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQH----------L-GAVNTITFVDSNRR-FVTS 461 (604)
Q Consensus 399 ~~~~~~~~~~----~~~~~~~lvsg~-~dg~I~iwD~~s~~~~~~~~~h----------~-~~V~~i~~sp~~~~-l~sg 461 (604)
..+..+.+++ ++ .++++++ .++.|.+||..+++++..+..+ . ..+.++.++|++.. +++.
T Consensus 222 ~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 222 IEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp SEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 8888888887 44 4566665 5899999999999999888652 2 37889999997665 5667
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccccccc-CcccccceEEE
Q 007431 462 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-GHIVAGYACQV 539 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l 539 (604)
..++.|.+||+.....+......+...+..+.|+|++++|++++ .++.|.+||+.++.....+.... .| .+....+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph--~g~g~~~ 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH--PGRGANF 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC--CTTCEEE
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC--CCCCccc
Confidence 78899999999875443311113456688999999999887766 57999999999887665443211 12 1222223
Q ss_pred EEcCC-CCEEEEEc-CCCcEEEEeCCC-------CeeEEEEecCCCcEEEEEEecCCCCEEEEEe-------CCCcEEEe
Q 007431 540 NFSPD-GRFVMSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-------WDGLIKYW 603 (604)
Q Consensus 540 ~~spd-g~~L~sgs-~dG~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-------~DG~I~vW 603 (604)
++|+ |.+++++. .+++|.+||+.+ +++++++.+|.+.+..+.++| ++.+|++++ .+++|.||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 4777 66667765 689999999998 899999999998889999999 777888877 37899999
Q ss_pred C
Q 007431 604 D 604 (604)
Q Consensus 604 D 604 (604)
|
T Consensus 455 d 455 (543)
T 1nir_A 455 D 455 (543)
T ss_dssp E
T ss_pred E
Confidence 7
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=8.9e-25 Score=231.39 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=166.3
Q ss_pred ccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcC--------CCCCEEEEEECCCc
Q 007431 266 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFP--------KYGHLILSAGMDTK 337 (604)
Q Consensus 266 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp--------~~g~~L~sgs~Dg~ 337 (604)
......+......|...|.|-..... .....++.++.||.+.|++|+|+| + +++|+||+.|++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~--------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~t 167 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNET--------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDCT 167 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTE--------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTSE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCc--------cceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCCe
Confidence 45556677888899999999654321 122245567889999999999998 5 889999999999
Q ss_pred EEEEecCCCCeeeEEecCCCCceeeEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEeeC-------------------
Q 007431 338 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFST------------------- 397 (604)
Q Consensus 338 I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~Dg~I~vWD~~t~~~i~~~~~------------------- 397 (604)
|+|||+ ..+.++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++.......
T Consensus 168 v~~Wd~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 168 LIIWRL-TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEE-ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EEEEEC-CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 999999 5667777778899999999999987 5899999999999999998876543321
Q ss_pred -------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEE------------------e
Q 007431 398 -------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF------------------V 452 (604)
Q Consensus 398 -------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~------------------s 452 (604)
......+.+.. .++..+++++.|+.+++||+..+.....+..|...+..+.+ +
T Consensus 247 ~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp -----CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 11223344432 23478999999999999999988776666655554444333 3
Q ss_pred C--CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007431 453 D--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 453 p--~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
| ++.++++|+.||.|++||+.++....... .|..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2 23356778899999999999887766654 4778999999999999999998655 6666654
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.6e-23 Score=221.93 Aligned_cols=275 Identities=12% Similarity=0.075 Sum_probs=210.2
Q ss_pred CCeEEEEEcCCCCCEEEEEE----CCC----cEEEEec--CCCCeee--EEecCCCCceeeEEEcc--------------
Q 007431 314 KGVSAIRFFPKYGHLILSAG----MDT----KVKIWDV--VNSGKCM--RTYMGHSKAVRDISFCN-------------- 367 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs----~Dg----~I~IWd~--~~~~~~~--~~~~~h~~~V~~l~fsp-------------- 367 (604)
..|....|.+.+..++++|+ .+| +|+|||+ . +++++ ..+.+|...++.+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 46777889998677888887 467 8999998 5 34455 56889999999888875
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC---eEEEEeCCCCceEEE
Q 007431 368 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQE 438 (604)
Q Consensus 368 dg~~L~s~s~D------g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~iwD~~s~~~~~~ 438 (604)
.+..++.++.+ +.|++||+..+..............+.|+|++ ..|++++.++ .|++||+.+++.. .
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg---~~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG---SKLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC---CEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 16677776654 79999999865544444445566778888765 5688887775 9999999998875 4
Q ss_pred EcCcCCceeEEEEeCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEEE
Q 007431 439 YDQHLGAVNTITFVDSNRRFV-TSSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILI 512 (604)
Q Consensus 439 ~~~h~~~V~~i~~sp~~~~l~-sgs~Dg~--I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-g--~I~i 512 (604)
+..|.+.+.+++|+|++++|+ +++.++. |++||+.++... .+ ..+...+.+++|+|+|++|++++.+ + .|.+
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC-cCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 667888999999999999887 6666655 999999887763 33 3467789999999999999988864 4 6788
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC
Q 007431 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 589 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 589 (604)
||+.++... .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+| ++.
T Consensus 296 ~d~~~~~~~----~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~ 366 (415)
T 2hqs_A 296 VNINGGAPQ----RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGT 366 (415)
T ss_dssp EETTSSCCE----ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSS
T ss_pred EECCCCCEE----EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCC
Confidence 888765422 12222 3467789999999999988764 58999999998874 455554 789999999 677
Q ss_pred EEEEEeCCC---cEEEeC
Q 007431 590 KVATCGWDG---LIKYWD 604 (604)
Q Consensus 590 ~l~tgg~DG---~I~vWD 604 (604)
+|++++.++ .|.+||
T Consensus 367 ~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEcCCCccEEEEEE
Confidence 888887776 688885
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=3.7e-22 Score=204.67 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=200.0
Q ss_pred EEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC-CCcEEEEECCCCcE-EEEeeC
Q 007431 320 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQV-IRTFST 397 (604)
Q Consensus 320 ~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD~~t~~~-i~~~~~ 397 (604)
.|.++.+.++++++.++.|.+||+ .+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456664666888889999999999 6778877777777777 9999999997777766 89999999999987 777776
Q ss_pred CCcceE-EEEccCCCCCcEEEEEEcC-C--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EEeCCCc-EEEEE
Q 007431 398 GKIPYV-VKLNPDDDKQNILLAGMSD-K--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKS-LRVWE 471 (604)
Q Consensus 398 ~~~~~~-~~~~~~~~~~~~lvsg~~d-g--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~-sgs~Dg~-I~iwd 471 (604)
+..+.. +.+.+++ .+++++..+ + .|.+||+.+++.+..+.. ...+.+++|+|++++++ ++..++. |.+|+
T Consensus 82 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 GQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 666666 8888755 456655544 3 999999999998888764 44568999999998554 5566688 99999
Q ss_pred CCCCeEE----EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007431 472 FGIPVVI----KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 472 l~~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
+.....+ .... ........++|+|+|+++++++ .++.|.+||+.++........+.. ...+..++|+|+|+
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGS 233 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSS
T ss_pred ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCC
Confidence 8753322 1111 3445678999999999776665 578999999987655111222222 24456799999999
Q ss_pred EEEEEc-CCCcEEEEeCCCCee--EEEEecC----CC---cEEEEEEecCCCCEE-EEEeCCCcEEEeC
Q 007431 547 FVMSGD-GEGKCWFWDWKSCKV--FRTLKCH----EG---VCIGCEWHPLEQSKV-ATCGWDGLIKYWD 604 (604)
Q Consensus 547 ~L~sgs-~dG~I~iwd~~t~~~--~~~l~~h----~~---~V~~v~~sp~~~~~l-~tgg~DG~I~vWD 604 (604)
+|++++ .++.|.+||+.+++. +..+..+ .. .+..++|+| ++.+| +++..++.|.+||
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEE
Confidence 877665 578899999999887 5554433 22 225589999 55555 5556677999996
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=5.5e-22 Score=203.47 Aligned_cols=272 Identities=7% Similarity=0.138 Sum_probs=194.3
Q ss_pred CEEEEEECCCcEEEEecCCCC--eeeEEecCCCCceeeEEEccCCCEEEEEECC-CcEEEEECC--CCc--EEEEeeCCC
Q 007431 327 HLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKYWDTE--TGQ--VIRTFSTGK 399 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D-g~I~vWD~~--t~~--~i~~~~~~~ 399 (604)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 344555789999999994334 33333 3577889999999999999998887 999999998 555 445555555
Q ss_pred cceEEEEccCCCCCcEEEEEEcCCeEEEEeCC---CCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCC-
Q 007431 400 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI- 474 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~- 474 (604)
.+..+.+.+++. .+++++..++.|.+||+. ..+.+..+.. ...+.+++|+|+++++++++ .++.|++||+..
T Consensus 85 ~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 777888887552 344445558999999994 4445555543 34689999999999888877 899999999987
Q ss_pred CeEEE----EeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCC--cee--eccccccc-CcccccceEEEEEcCC
Q 007431 475 PVVIK----YISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRE--RFQ--LNKKKRFA-GHIVAGYACQVNFSPD 544 (604)
Q Consensus 475 ~~~~~----~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~--~~~--~~~~~~~~-~~~~~~~v~~l~~spd 544 (604)
+.... .+.......+..++|+|++++|++++ .++.|.+|++.. +.. ......+. ++.....+..++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 54322 23333445678899999999877666 789999999853 211 11111111 1111235667999999
Q ss_pred CCEEE-EEcCCCcEEEEeCC----CCeeEEEEecCCCcEEEEEEecCCCCEEEEEe-CCCcEEEeC
Q 007431 545 GRFVM-SGDGEGKCWFWDWK----SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 604 (604)
Q Consensus 545 g~~L~-sgs~dG~I~iwd~~----t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG~I~vWD 604 (604)
|++|+ ++..++.|.+||+. +.+.+..+..+.. +.+++|+| ++.+|++++ .++.|.+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEE
Confidence 99887 45578999999998 3455666665555 78999999 666676666 689999993
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=3.6e-21 Score=198.60 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=210.8
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEC-------CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcEEE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGM-------DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKY 383 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~-------Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I~v 383 (604)
....+..++|+|+ +++|++++. ++.|.+||. .+++.+..+.. ...+..++|+++|++++++ ..++.|.+
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 4467889999999 777777764 568999999 57777777754 3458899999999966555 55799999
Q ss_pred EECCCCcEEEEeeCCCc----------ceEEEEccCCCCCcEEEEE-EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007431 384 WDTETGQVIRTFSTGKI----------PYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~----------~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
||+.+++.+..+..+.. +..+.+.+++. .+++++ ..++.|.+||+.+++.+..+..+...+.++.|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99999999888876432 45677777542 344444 247899999999999998887667778999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCCcccEEEEcCCCCEEEEEEcC-CeEEEEEcCCceeeccccccc
Q 007431 453 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLD-NQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~D-g~I~iwd~~~~~~~~~~~~~~ 528 (604)
|+++++++++.++.|.+||+.++.....+... +...+..++|+|++++|++++.+ +.|.+||+.++........
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 271 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-- 271 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--
Confidence 99999999999999999999999888776542 34457789999999988777765 8999999988765543332
Q ss_pred CcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007431 529 GHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
+. ...++|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+| ++++|+.+..+
T Consensus 272 ~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp SS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT-TSCEEEEEEEC
T ss_pred CC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC-CCCEEEEEEcc
Confidence 11 13589999999666555 68999999999999998887644 679999999 55545444433
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2.1e-22 Score=230.26 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=209.0
Q ss_pred CCCeEEEEEcCCCCCEEEEEEC-CC-----cEEEEecCCCCeeeEEecCCCC------------------------ceee
Q 007431 313 TKGVSAIRFFPKYGHLILSAGM-DT-----KVKIWDVVNSGKCMRTYMGHSK------------------------AVRD 362 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~-Dg-----~I~IWd~~~~~~~~~~~~~h~~------------------------~V~~ 362 (604)
...|.+++|+|+ |++|++++. |+ .|++||+ .+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456999999999 999999998 88 8999999 56777666655443 3899
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE
Q 007431 363 ISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 439 (604)
Q Consensus 363 l~fspdg~~L~s~s~Dg~I~vWD~~t~---~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~ 439 (604)
++|+|||++|++++. +.|.+||+.++ ..............+.|+|++ ..|+.++ ++.|++||+.+++.....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG---~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG---GFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS---SEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC---CEEEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999987 99999999988 544333334556677888865 4566665 579999999998776555
Q ss_pred cCcCCc----------------eeEEEEeCCCCEEEEEeCCC---------------------------------cEEEE
Q 007431 440 DQHLGA----------------VNTITFVDSNRRFVTSSDDK---------------------------------SLRVW 470 (604)
Q Consensus 440 ~~h~~~----------------V~~i~~sp~~~~l~sgs~Dg---------------------------------~I~iw 470 (604)
..+... +.++.|+|+|++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999987765 78899
Q ss_pred ECCC-CeEEEEeec-CCCCcccEEEEcCCCCEEEEEEc-----CCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 471 EFGI-PVVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 471 dl~~-~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~s~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
|+.+ +........ .+...+..++| |+|++|++++. +..|++||+.++............ .-..+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT-WVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS-CCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC-cCCcCCceEECC
Confidence 9987 765443322 36677899999 99999998775 567999999876544322211100 000234689999
Q ss_pred CCCEEEEEcCCCcEEEEeCC-CCeeEEEEecCCCcEEEE-EEecCCCCEEEEEeCCC--cEEEeC
Q 007431 544 DGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDG--LIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~-t~~~~~~l~~h~~~V~~v-~~sp~~~~~l~tgg~DG--~I~vWD 604 (604)
||+++++++.+|.+.||.+. +++ ...+..|...|.++ .|+|++..++++++.++ .++||+
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999988887765 455 77777888888887 59994443445666666 888884
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.6e-21 Score=199.47 Aligned_cols=261 Identities=10% Similarity=0.073 Sum_probs=201.0
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCC-C-ceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCC----
Q 007431 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-K-AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGK---- 399 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~-~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~~---- 399 (604)
.+|++++.++.|.+||+ .+++.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 57899999999999999 6777777765332 2 588999999998765 55567899999999999988877654
Q ss_pred --cceEEEEccCCCCCcEEEEEE------------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007431 400 --IPYVVKLNPDDDKQNILLAGM------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 465 (604)
Q Consensus 400 --~~~~~~~~~~~~~~~~lvsg~------------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg 465 (604)
.+..+.+.+++ ..++++. .++.|.+||+.+++.+..+.. ...+.++.|+|++++|+++ ++
T Consensus 81 ~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 81 VKSLFGAALSPDG---KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp EECTTCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred cccccceEECCCC---CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 56677787754 4566664 579999999999988877764 4568889999999988888 68
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC------------------------eEEEEEcCCceee
Q 007431 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN------------------------QILIYSTRERFQL 521 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg------------------------~I~iwd~~~~~~~ 521 (604)
.|.+||+.++.....+..... ...+.|+|++..|++.+..+ .|.+||+.++...
T Consensus 155 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 999999999988777654321 12337899988765554332 4688998876543
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007431 522 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
. ..+..+ ...+..++|+|+|++|+++ ++.|++||+.+++.+..+..+. .+.+++|+| ++.+|++++.++.|.
T Consensus 233 -~-~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 233 -M-REVRIM--DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH-SYYSVNVST-DGSTVWLGGALGDLA 304 (337)
T ss_dssp -E-EEEEEC--SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECT-TSCEEEEESBSSEEE
T ss_pred -E-eecCCC--CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC-ceeeEEECC-CCCEEEEEcCCCcEE
Confidence 1 112222 2456679999999999988 7899999999999988887543 468999999 667888888999999
Q ss_pred EeC
Q 007431 602 YWD 604 (604)
Q Consensus 602 vWD 604 (604)
+||
T Consensus 305 v~d 307 (337)
T 1pby_B 305 AYD 307 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.5e-21 Score=194.94 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=186.0
Q ss_pred EEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEeeCC--CcceEEEEc
Q 007431 331 SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG--KIPYVVKLN 407 (604)
Q Consensus 331 sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t-~~~i~~~~~~--~~~~~~~~~ 407 (604)
+++.|+.|++||+ ..++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++........ ..+..+.|+
T Consensus 17 ~~~~~~~i~~~d~-~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNI-RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEET-TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeC-CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3467899999999 455554 4556899999999999999999987 78999999999 8877665444 344567787
Q ss_pred cCCCCCcEEEEEEc----CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EEeCCCcEEEEECC--CCeEEEE
Q 007431 408 PDDDKQNILLAGMS----DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFG--IPVVIKY 480 (604)
Q Consensus 408 ~~~~~~~~lvsg~~----dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~-sgs~Dg~I~iwdl~--~~~~~~~ 480 (604)
+++ ..|++++. ...|..+++.++.. ..+.. ...+.++.|+|++++|+ +++.++.++||++. .... ..
T Consensus 94 pdg---~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~ 167 (297)
T 2ojh_A 94 PDG---ALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR 167 (297)
T ss_dssp TTS---SEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred CCC---CEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence 754 56777772 35666667666653 33433 33589999999999877 77789999999864 3333 33
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCCCEEEEEcCC----
Q 007431 481 ISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---- 554 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---- 554 (604)
+ ..+...+.+++|+|++++|++++ .++.+.+|++. ..... ..+..+ ...+..++|+|+|++|++++.+
T Consensus 168 ~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 168 L-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDS--AYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp C-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCC--SEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred c-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecC--CcccCCeEECCCCCEEEEEEcCCCCC
Confidence 3 34667899999999999888777 48899999876 22222 223333 3567789999999999888765
Q ss_pred -------CcEEEEeCCCCee--EEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007431 555 -------GKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 555 -------G~I~iwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
+.|++||+.+++. +..+..|...+.+++|+| ++..|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEecc
Confidence 5699999988865 444557888899999999 666777666543
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=9.3e-20 Score=186.79 Aligned_cols=267 Identities=12% Similarity=0.121 Sum_probs=187.4
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEecCC-CC--eeeEEecCCCCceeeEEEccCCCEEEEEEC-CCcEEEEE
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMD-TKVKIWDVVN-SG--KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWD 385 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~D-g~I~IWd~~~-~~--~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD 385 (604)
.|...+.+++|+|+ +++|++++.+ +.|.+|++.. .+ ..+..+..+. .+.+++|+|++++|++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 57788999999999 8888888876 9999999941 23 2444555444 8899999999998877765 78899999
Q ss_pred C---CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEE-cCCeEEEEeCCC-CceEE----EEcC-cCCceeEEEEeCCC
Q 007431 386 T---ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNT-KEITQ----EYDQ-HLGAVNTITFVDSN 455 (604)
Q Consensus 386 ~---~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~s-~~~~~----~~~~-h~~~V~~i~~sp~~ 455 (604)
+ .+.+.+..+.....+..+.+.+++ ..+++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDN---RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTS---SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCCCccccccccccCCCCceEEEECCCC---CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 9 444566666666667778888764 3455555 899999999987 65432 2222 34578899999999
Q ss_pred CEEEEEe-CCCcEEEEECCC--CeE--EEEeec-CC----CCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCc-eeecc
Q 007431 456 RRFVTSS-DDKSLRVWEFGI--PVV--IKYISE-PH----MHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNK 523 (604)
Q Consensus 456 ~~l~sgs-~Dg~I~iwdl~~--~~~--~~~~~~-~~----~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~-~~~~~ 523 (604)
+++++++ .++.|.+|++.. +.. ...+.. +. ...+..++|+|++++|+++. .++.|.+|++... .....
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9776554 789999999953 221 222221 11 23455799999999887655 6899999999731 11112
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEe--CCCCe--eEEEEecCCCcEEEEEEecC
Q 007431 524 KKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWD--WKSCK--VFRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd--~~t~~--~~~~l~~h~~~V~~v~~sp~ 586 (604)
...+..+ ..+..++|+|+|++|++++ .++.|.+|+ ..+++ .+..+... ....+++|.++
T Consensus 270 ~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 270 EGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp EEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred eeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 2222222 2266799999999988887 689999994 45664 34455543 34567888873
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1e-19 Score=186.49 Aligned_cols=256 Identities=9% Similarity=0.030 Sum_probs=187.8
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEecCCCCee-eEEecCCCCceeeEEEccCCCEEEEEECCC-
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDK- 379 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs-~Dg~I~IWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg- 379 (604)
.+++..+..+...+ +++|+|+ +++|++++ .++.|.+||+ .+++. ...+..+..++.+++|+|+|++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIET-QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEEC-SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred cceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEEC-CCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 35566666667777 9999999 76555555 4899999999 56666 777777777766699999999999555443
Q ss_pred --cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCe-EEEEeCCCCceE----EEEcCcCCceeEEEEe
Q 007431 380 --NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEIT----QEYDQHLGAVNTITFV 452 (604)
Q Consensus 380 --~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~-I~iwD~~s~~~~----~~~~~h~~~V~~i~~s 452 (604)
.|.+||+.+++.+..+..+..+..+.+.+++. .+++++..++. |.+|++.....+ .........+.++.|+
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGN--GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECTTSS--CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECCCCC--EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence 89999999999999988888888888888653 46667677788 999998764332 1222345568999999
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccc
Q 007431 453 DSNRRFVT-SSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 453 p~~~~l~s-gs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~ 527 (604)
|+++++++ +..++.|.+||+.++.. +..+. ....+..++|+|+|++|++++ .++.|.+||+.++.... ...+
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-~~~~ 261 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-VKSF 261 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-EEEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-eccc
Confidence 99996554 55689999999988776 66654 346678999999999877665 46789999998765411 1111
Q ss_pred cCc-----ccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCe
Q 007431 528 AGH-----IVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCK 566 (604)
Q Consensus 528 ~~~-----~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~ 566 (604)
... .....+..++|+|+|++|++++ .++.|.+||+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 111 0111124589999999886554 56799999997654
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.1e-21 Score=221.21 Aligned_cols=277 Identities=10% Similarity=0.059 Sum_probs=197.2
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC---ceeeEEEccCCCEEEEEECC---------CcEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASYD---------KNIK 382 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~L~s~s~D---------g~I~ 382 (604)
.+.+++|+|+ |+++++ +.||+|++||+ .+++....+..|.. .|.+++|||||++|++++.+ +.|.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3677899999 777766 78999999999 57777777777765 49999999999999999874 7888
Q ss_pred EEECCCCcEEEEeeCCC----cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCce------------
Q 007431 383 YWDTETGQVIRTFSTGK----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV------------ 446 (604)
Q Consensus 383 vWD~~t~~~i~~~~~~~----~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V------------ 446 (604)
+||+.+++. ..+.... ....+.|+|++ ..|+.++. +.|++||+.+++.......+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG---~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG---QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSST---TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCC---CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 999999886 3333221 14456777755 45666654 899999999998877666544433
Q ss_pred ------eEEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCeEEEEeecC--
Q 007431 447 ------NTITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVIKYISEP-- 484 (604)
Q Consensus 447 ------~~i~~sp~~~~l~sgs~Dg----------------------------------~I~iwdl~~~~~~~~~~~~-- 484 (604)
.++.|+|+|++|++++.++ .|++||+.++.....+..+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 7899999999999887553 7999999887754444332
Q ss_pred ---CCCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccce----EEEEEcCCCCEEEE--E
Q 007431 485 ---HMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYA----CQVNFSPDGRFVMS--G 551 (604)
Q Consensus 485 ---~~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~L~s--g 551 (604)
+...+..++|+|+|++|++.+.. ..|++||+.++......... + ...+ ..++|||||+.|+. +
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~--~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--S--EAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--C--SSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--c--CCEEeccCCCceEcCCCCeEEEEEe
Confidence 25568899999999988777543 57999999876543222111 1 1121 25799999997764 4
Q ss_pred cCCC------cEEEEe-CCCCe--eEEEEecCCCcEEE-EEEecCCCCEEEEEeCC---CcEEEeC
Q 007431 552 DGEG------KCWFWD-WKSCK--VFRTLKCHEGVCIG-CEWHPLEQSKVATCGWD---GLIKYWD 604 (604)
Q Consensus 552 s~dG------~I~iwd-~~t~~--~~~~l~~h~~~V~~-v~~sp~~~~~l~tgg~D---G~I~vWD 604 (604)
..+| .|++|| ..++. +...+..+...+.. ++|+| ++..|+..+.+ +.++||+
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEE
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEE
Confidence 5666 577788 34444 14445444444554 69999 56667655554 7888884
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.6e-20 Score=208.89 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=196.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEEEEEC---CCcEEEEECC
Q 007431 313 TKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASY---DKNIKYWDTE 387 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~-Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~s~s~---Dg~I~vWD~~ 387 (604)
..+|.+++|+|+ |+.|++++. ||+++||++ ..+...+ +..|. ..|..++|+|+ +++++++. +....||.+.
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 557999999999 888888876 999999998 5555544 45555 68999999999 77777765 4556665553
Q ss_pred C---CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007431 388 T---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 388 t---~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
. +... .+.......+..+++++. .++++...++.+.+||+.+++.......+. .++.|+|+|++|++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 3 3322 444444455778888764 455555555666699999987665554333 889999999999988877
Q ss_pred ----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcccc---cc
Q 007431 465 ----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVA---GY 535 (604)
Q Consensus 465 ----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~---~~ 535 (604)
+.|++||+.++... .+ ..+...+..++|+|||++|+++..++ .|++||+.++... ........... ..
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 78999999887754 33 35677889999999999999888888 8999999876544 22211111110 01
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc---EEEeC
Q 007431 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL---IKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~---I~vWD 604 (604)
....+|+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ ++.++++++.+.. |.+||
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEc
Confidence 122339999999999999999999999 76554 345678899999 4667888887744 55554
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=2.7e-20 Score=211.52 Aligned_cols=274 Identities=10% Similarity=0.089 Sum_probs=198.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC-----
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET----- 388 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t----- 388 (604)
..|.+++|+|+ +.++++. ++.|++||+ .+++.. .+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~-~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDM-LARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEET-TTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEEC-CCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 67999999999 6666653 599999999 555554 445677889999999999999985 679999999998
Q ss_pred CcEEEEeeCCCc---------------ceEEEEccCCCCCcEEEEEE---------------------------------
Q 007431 389 GQVIRTFSTGKI---------------PYVVKLNPDDDKQNILLAGM--------------------------------- 420 (604)
Q Consensus 389 ~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~lvsg~--------------------------------- 420 (604)
++.......+.. ...+.|+|++ ..|++++
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 877654443333 3567787765 4666665
Q ss_pred cCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEee-cCCC---Ccc
Q 007431 421 SDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS-EPHM---HSM 489 (604)
Q Consensus 421 ~dg~I~iwD~~s~~~~~~~~--~h~~~V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~~~~~~~~~-~~~~---~~v 489 (604)
.+..|++||+.+++...... .|...+.++.|+|++++|++++.++ .|++||+.++.....+. .... ..+
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 44789999999987655442 4667899999999999999887775 89999999883333332 2122 234
Q ss_pred cEEEEcC--CCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEE-EEEcCCCCEEEEEc-CCC----cEEEE
Q 007431 490 PSISLHP--NTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGD-GEG----KCWFW 560 (604)
Q Consensus 490 ~~l~~sp--~g~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~L~sgs-~dG----~I~iw 560 (604)
.+++|+| +|++|++++.++.+.||.+. ++..+. .+..+ ...+.. ++|+|+|+.|+.++ .++ .|+.|
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~---~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR---QVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE---ECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE---ecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 6789999 99999999999999999875 333222 22233 233444 79999999876554 444 67778
Q ss_pred eCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEE-eCC---CcEEEeC
Q 007431 561 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWD---GLIKYWD 604 (604)
Q Consensus 561 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tg-g~D---G~I~vWD 604 (604)
|+.+++ ...+. |...+.+++|+| ++++|+.. +.+ +.|.+||
T Consensus 388 d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 388 DIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp ETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEE
T ss_pred EcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEE
Confidence 877776 33343 667799999999 55666555 433 4599886
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2.1e-20 Score=213.66 Aligned_cols=265 Identities=9% Similarity=0.016 Sum_probs=195.0
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
.|.+++|+|+ |++|++++. +.|.+||+ .++. .+..+..|...+.+++|+|||++|++++. +.|.+||+.+++..
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~-~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDL-KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEES-SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEEC-CCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE
Confidence 4899999999 899998886 99999999 4442 44567788889999999999999999874 69999999998776
Q ss_pred EEeeCCCc-----------------ceEEEEccCCCCCcEEEEEEcCC--------------------------------
Q 007431 393 RTFSTGKI-----------------PYVVKLNPDDDKQNILLAGMSDK-------------------------------- 423 (604)
Q Consensus 393 ~~~~~~~~-----------------~~~~~~~~~~~~~~~lvsg~~dg-------------------------------- 423 (604)
.....+.. ...+.|+|++ ..|++++.|+
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 55443332 2457787765 4466665554
Q ss_pred -eEEEEeCCC-CceEEEEc--CcCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeecCCCC---cccE
Q 007431 424 -KIVQWDMNT-KEITQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVIKYISEPHMH---SMPS 491 (604)
Q Consensus 424 -~I~iwD~~s-~~~~~~~~--~h~~~V~~i~~sp~~~~l~sgs~-----Dg~I~iwdl~~~~~~~~~~~~~~~---~v~~ 491 (604)
.|++||+.+ ++...... .|...+.+++| |++++|++++. +..|++||+.++.....+...... .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 899999998 87655443 47788999999 99999987754 567999999988776655432222 4568
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE-EEcCCCCEEE-EEcCCC--cEEEEeCCC-Ce
Q 007431 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVM-SGDGEG--KCWFWDWKS-CK 566 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~L~-sgs~dG--~I~iwd~~t-~~ 566 (604)
++|+|+|+++++++.++.+.||.+...... ..+..+ ...+..+ .|+|+|+.|+ +++.++ .++||++.. +.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKA---AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCE---EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCe---eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999899889998888876522112 223333 2345555 5999999775 455555 899999864 55
Q ss_pred eEEEEecCCCcEEEEEEecCCCCEEEEE
Q 007431 567 VFRTLKCHEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 567 ~~~~l~~h~~~V~~v~~sp~~~~~l~tg 594 (604)
....+.. ...+.+++|+|+ +.+|+..
T Consensus 417 ~~~~l~~-~~~~~~~~~spd-g~~l~~~ 442 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARN-ASVYVDS 442 (741)
T ss_dssp CCEECCC-SCSEEEEEECTT-SSEEEEE
T ss_pred Ceeeccc-CCCceEEEECCC-CCEEEEE
Confidence 5666665 566889999994 5555544
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=5e-20 Score=218.92 Aligned_cols=279 Identities=10% Similarity=0.106 Sum_probs=221.3
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007431 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
...+.+|...|.++.|+++ .++++++.|+.+.||.+...+.....+..|. .+..++|+|+|++|+++. ++.|.+||
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEec
Confidence 3455899999999999987 6778888899999998854455666776665 467889999999998875 89999999
Q ss_pred CCCCcEEEEeeCCC------------cceEEEEc-cCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC-ceeEEEE
Q 007431 386 TETGQVIRTFSTGK------------IPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITF 451 (604)
Q Consensus 386 ~~t~~~i~~~~~~~------------~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~-~V~~i~~ 451 (604)
+..... ..+.... ....+.|+ |++ ..+++++ ++.|++|++..+.... +..|.. .+.++.|
T Consensus 272 ~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 272 PDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG 345 (1045)
T ss_dssp TTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred CCceEe-eeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence 955444 3544322 45678888 765 3455555 8999999998887544 566777 8999999
Q ss_pred eCCCCEEEEEeCCCcEE-EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc
Q 007431 452 VDSNRRFVTSSDDKSLR-VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 530 (604)
Q Consensus 452 sp~~~~l~sgs~Dg~I~-iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 530 (604)
+ +++.|++++.++.|. +|++...... .+. .+...+..++|+|+|++|++++.++.|++||+.++..... ..++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~---~~~~ 419 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI---ERSR 419 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe---ccCC
Confidence 9 999999999888888 9999876654 333 5777899999999999999999999999999987654322 2233
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCC----------cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 531 IVAGYACQVNFSPDGRFVMSGDGEG----------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~dG----------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+| ++.+|++++.++..
T Consensus 420 --~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 420 --EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLD 495 (1045)
T ss_dssp --SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCC
T ss_pred --CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCC
Confidence 34566799999999998887654 89999999988 667778888899999999 77789999988877
Q ss_pred EEeC
Q 007431 601 KYWD 604 (604)
Q Consensus 601 ~vWD 604 (604)
.+|+
T Consensus 496 ~~~~ 499 (1045)
T 1k32_A 496 PSPD 499 (1045)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 7774
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4e-20 Score=189.05 Aligned_cols=257 Identities=11% Similarity=0.046 Sum_probs=193.4
Q ss_pred ceeEEec-CCCC-CeEEEEEcCCCCC-EEEEEECCCcEEEEecCCCCeeeEEecC-C----CCceeeEEEccCCCEEEEE
Q 007431 304 RLVHTWS-GHTK-GVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMG-H----SKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 304 ~~i~tl~-gH~~-~V~~l~fsp~~g~-~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h----~~~V~~l~fspdg~~L~s~ 375 (604)
+++..+. ++.. .+.+++|+|+ ++ ++++++.++.|.+||+ .+++.+..+.. + ...+.+++|+|+|++|+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 99 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcccccccccceEECCCCCEEEEE
Confidence 4455554 3322 4889999999 65 4566667899999999 56777666543 2 2268899999999999988
Q ss_pred E------------CCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC
Q 007431 376 S------------YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 443 (604)
Q Consensus 376 s------------~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~ 443 (604)
+ .++.|.+||+.+++.+..+..+..+..+.+.+++ ..++++ ++.|++||+.+++.+..+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG---SKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS---SCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred ecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC---CEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 6 5799999999999998888877777778888765 335555 6899999999999887776544
Q ss_pred CceeEEEEeCCCCEEEEEeCCC------------------------cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCC
Q 007431 444 GAVNTITFVDSNRRFVTSSDDK------------------------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 499 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg------------------------~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~ 499 (604)
. ...+.|+|++..++.++..+ .|.+||+.+.........++...+.+++|+|+++
T Consensus 175 ~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 175 W-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp T-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS
T ss_pred c-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC
Confidence 1 11237788888665544332 4689999988765322234556778899999999
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007431 500 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 576 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~ 576 (604)
+|+++ ++.|.+||+.++........ ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99888 79999999988765433221 13456799999999999999999999999999999998876543
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.8e-20 Score=212.97 Aligned_cols=271 Identities=9% Similarity=0.098 Sum_probs=192.7
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee-EEecCCC-----------------CceeeEEEccCCCEEEEEEC
Q 007431 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHS-----------------KAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~-~~~~~h~-----------------~~V~~l~fspdg~~L~s~s~ 377 (604)
+..+.|+ +..+++++.++ | +||+ .+++.+ ..+..|. ..|.+++|+|+ ..++.+.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 5557787 34666777788 8 9999 566552 3333333 56999999999 6666654
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-----CceEEEEcCcCCc-------
Q 007431 378 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEITQEYDQHLGA------- 445 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-----~~~~~~~~~h~~~------- 445 (604)
++.|++||+.+++.............+.|+|++ ..|++ ..++.|++||+.+ ++.......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCC---CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 599999999999877666555556677888865 45666 4689999999998 8766554444433
Q ss_pred -------eeEEEEeCCCCEEEEEe---------------------------------CCCcEEEEECCCCeEEEEeec-C
Q 007431 446 -------VNTITFVDSNRRFVTSS---------------------------------DDKSLRVWEFGIPVVIKYISE-P 484 (604)
Q Consensus 446 -------V~~i~~sp~~~~l~sgs---------------------------------~Dg~I~iwdl~~~~~~~~~~~-~ 484 (604)
+.++.|+|++++|++++ .+..|++||+.++........ .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 48999999999999987 456799999998876544322 3
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcE
Q 007431 485 HMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKC 557 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~L~sgs~dG~I 557 (604)
+...+.+++|+|+|++|++++.++ .|.+||+.++.................+..++|+| +|++|++++.+|.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 556789999999999999988776 89999998873222221111110001234579999 99999999999999
Q ss_pred EEEeCC-CCeeEEEEecCCCcEEE-EEEecCCCCEEEEEeCCC
Q 007431 558 WFWDWK-SCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 558 ~iwd~~-t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~tgg~DG 598 (604)
.||.+. ++..+..+..|...+.+ ++|+|++..++++++.++
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 999886 67778888888878877 799994443444555555
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=4.6e-19 Score=183.23 Aligned_cols=263 Identities=9% Similarity=0.119 Sum_probs=179.8
Q ss_pred CCcEEEEecCC-CCeeeE-EecCCCCceeeEEEccCCCEEEEEEC---CCcEEEEECCCCcE--EEE-eeCCCcceEEEE
Q 007431 335 DTKVKIWDVVN-SGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQV--IRT-FSTGKIPYVVKL 406 (604)
Q Consensus 335 Dg~I~IWd~~~-~~~~~~-~~~~h~~~V~~l~fspdg~~L~s~s~---Dg~I~vWD~~t~~~--i~~-~~~~~~~~~~~~ 406 (604)
++.|.+|.+.. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++.. +.. ......+..+++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 56688887743 344332 3345667788999999999 555554 68999999987763 333 223556777888
Q ss_pred ccCCCCCcEEEEEE-cCCeEEEEeCC-CCc--eEEEEcC---------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007431 407 NPDDDKQNILLAGM-SDKKIVQWDMN-TKE--ITQEYDQ---------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 407 ~~~~~~~~~lvsg~-~dg~I~iwD~~-s~~--~~~~~~~---------h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~ 473 (604)
.+++ .+|++++ .++.|.+|++. .+. .+..+.. +...+.+++|+|+++++++...++.|.+|++.
T Consensus 94 spdg---~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 94 DEAR---QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp ETTT---TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred CCCC---CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 8865 4566555 78999999996 332 3333322 12348899999999977777778899999998
Q ss_pred -CCeEE--EEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEcCC--ceeecccccccCcc----cccceEEEEEcC
Q 007431 474 -IPVVI--KYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE--RFQLNKKKRFAGHI----VAGYACQVNFSP 543 (604)
Q Consensus 474 -~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~s~-s~Dg~I~iwd~~~--~~~~~~~~~~~~~~----~~~~v~~l~~sp 543 (604)
.+... ..+.......+..++|+|+|++|+++ ..++.|.+|++.. +.. .....+.... ....+..++|+|
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECC
Confidence 44322 22223334467789999999977665 4678999999874 321 1111111111 113477899999
Q ss_pred CCCEEE-EEcCCCcEEEEeCC---CCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC-CCcEEEe
Q 007431 544 DGRFVM-SGDGEGKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-DGLIKYW 603 (604)
Q Consensus 544 dg~~L~-sgs~dG~I~iwd~~---t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~-DG~I~vW 603 (604)
||++|+ +...++.|.+|++. ..+.+..+..+...+.+++|+| ++++|++++. ++.|.+|
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEE
Confidence 999885 55568999999997 3356667777777788999999 6667777665 5899999
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=3.4e-19 Score=183.76 Aligned_cols=243 Identities=12% Similarity=0.150 Sum_probs=192.8
Q ss_pred CCCceeeEEEccCCCEEEEEEC-------CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007431 356 HSKAVRDISFCNDGTKFLTASY-------DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~-------Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
....+..++|+|++++|++++. ++.|.+||..+++.+..+..+..+..+.+.+++. .+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ--TLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT--EEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC--EEEEEecCCCEEEEE
Confidence 3456889999999999888874 4689999999999999988877777888887653 466666778999999
Q ss_pred eCCCCceEEEEcCcCCc---------eeEEEEeCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC
Q 007431 429 DMNTKEITQEYDQHLGA---------VNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~~---------V~~i~~sp~~~~l~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~ 497 (604)
|+.+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+......+. .+...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCC
Confidence 99999988888765432 78899999999877766 47889999999998887774 24445789999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCCC
Q 007431 498 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG 576 (604)
Q Consensus 498 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG~I~iwd~~t~~~~~~l~~h~~ 576 (604)
+++|++++.++.|.+||+.++........... .....+..++|+|+|++|++++. ++.|.+||..+++.+..+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 99999999999999999988766544332111 11345677999999998777665 59999999999999988886543
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 577 VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 577 ~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++|+|++..++++...++.|.+||
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 57999994443555665799999997
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=3.1e-19 Score=183.54 Aligned_cols=260 Identities=9% Similarity=0.053 Sum_probs=185.5
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEe
Q 007431 318 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTF 395 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~ 395 (604)
+++++++ +.++++++.++.|.+||+ .+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3456776 889999999999999999 6778877776543 2578999999998665 4556899999999999988887
Q ss_pred eCCCc-------ceEEEEccCCCCCcEEEEEEcC------------CeEEEEeCCCCc---eEEEEcCcCCceeEEEEeC
Q 007431 396 STGKI-------PYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKE---ITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 396 ~~~~~-------~~~~~~~~~~~~~~~lvsg~~d------------g~I~iwD~~s~~---~~~~~~~h~~~V~~i~~sp 453 (604)
..... +..+.+++++ ..+++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred EcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence 75442 5667787754 466666654 899999998843 334443 334688999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC-----------------------cccEEEEcCCCCE----------
Q 007431 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------------------SMPSISLHPNTNW---------- 500 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-----------------------~v~~l~~sp~g~~---------- 500 (604)
+++ +++++ +.|.+||+.++.....+...... ....+++++++..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 34999999988877766432200 2233555544311
Q ss_pred -EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE
Q 007431 501 -LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 578 (604)
Q Consensus 501 -l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V 578 (604)
+......+.+.+|++.. ....+..++|+| +|++|+++ ++.|.+||+.+++.+..+..+. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~ 297 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFAD--------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TY 297 (349)
T ss_dssp EEEEETTTCCEEEEEEEE--------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CC
T ss_pred EEEEeccCCcEEeccccc--------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cc
Confidence 11222234444444311 134566799999 99999988 8899999999999988887543 46
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 579 IGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++|+| ++.+|++++.++.|++||
T Consensus 298 ~~~~~s~-dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 298 YCVAFDK-KGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp CEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred cceEECC-CCCEEEEecCCCeEEEEe
Confidence 7899999 566777788899999997
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.7e-19 Score=179.98 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=175.5
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CeeeEEecCC-CCceeeEEEccCCCEEEEEEC--CCcEE
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTYMGH-SKAVRDISFCNDGTKFLTASY--DKNIK 382 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~-~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s~--Dg~I~ 382 (604)
..+..|...|.+++|+|+ +++|++++ ++.|++||+ .. ++....+..| ...|.+++|+|++++|++++. ++.+.
T Consensus 35 ~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSL-AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEES-SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeC-CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 356678999999999999 88998887 789999999 45 6666666565 478999999999999999983 34555
Q ss_pred EE--ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC--CCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007431 383 YW--DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 383 vW--D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~--~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
|| ++.++. ...+........+.|++++ ..+++++..++.+.+|++ .++ ....+..+...+.++.|+|++++|
T Consensus 112 l~~~~~~~~~-~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 112 IYLLPSTGGT-PRLMTKNLPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp EEEEETTCCC-CEECCSSSSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCc-eEEeecCCCccceEECCCC--CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEE
Confidence 55 555555 3445444455666777654 245558888999999885 344 345666788899999999999988
Q ss_pred EEEe-CCCcEEEEECC-CCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCceeecccc
Q 007431 459 VTSS-DDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----------NQILIYSTRERFQLNKKK 525 (604)
Q Consensus 459 ~sgs-~Dg~I~iwdl~-~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----------g~I~iwd~~~~~~~~~~~ 525 (604)
++++ .++.+++|++. .......+. .+...+.+++|+|++++|++++.+ +.|.+||+.++.... ..
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~ 265 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-LF 265 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-EE
T ss_pred EEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-ee
Confidence 8766 58999999986 344444443 466778899999999999988876 569999998754321 12
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007431 526 RFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
.+.++ ...+..++|+|+|++|++++.+.
T Consensus 266 ~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 266 DLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCCC--CcccccceECCCCCEEEEEEecc
Confidence 22223 34566789999999998877553
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=3.4e-19 Score=211.72 Aligned_cols=275 Identities=12% Similarity=0.001 Sum_probs=211.1
Q ss_pred CCCCeEEEEEc-CCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC-ceeeEEEccCCCEEEEEECCCcEE-EEECCC
Q 007431 312 HTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASYDKNIK-YWDTET 388 (604)
Q Consensus 312 H~~~V~~l~fs-p~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~-~V~~l~fspdg~~L~s~s~Dg~I~-vWD~~t 388 (604)
|...|.+++|+ |+ |++|++++ ++.|.+|++ ..+. ...+..|.. .+.+++|+ +|+.|++++.++.|. +||+.+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDV-SGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECT-TSSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcC-CCCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 56689999999 99 88888877 789999998 4444 344677887 89999999 999999999888898 999988
Q ss_pred CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC---
Q 007431 389 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--- 465 (604)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg--- 465 (604)
++.............+.|+|++ ..|++++.++.|++||+.+++....+..|.+.+.+++|+|++++|++++.++
T Consensus 369 ~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 369 GKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp CCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 7765444222345567777754 6788999999999999999998888878999999999999999998887654
Q ss_pred -------cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee-------e-----c----
Q 007431 466 -------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-------L-----N---- 522 (604)
Q Consensus 466 -------~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~-------~-----~---- 522 (604)
.|++||+.++. ...+. .+...+..++|+|+|++|++++.++...+|+...... + .
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 523 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCC
Confidence 89999999877 44443 4667788899999999999999887777776432111 0 0
Q ss_pred ------------------------ccccccCcccccceEEEEEcCCCCEEEE-------------EcCCCcEEEEeCCCC
Q 007431 523 ------------------------KKKRFAGHIVAGYACQVNFSPDGRFVMS-------------GDGEGKCWFWDWKSC 565 (604)
Q Consensus 523 ------------------------~~~~~~~~~~~~~v~~l~~spdg~~L~s-------------gs~dG~I~iwd~~t~ 565 (604)
....+.. ..+.+..++++|+|.++++ .+..+.|++||+.++
T Consensus 524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0001111 1355778999999987775 123557899999888
Q ss_pred eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 566 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+..... ..+.+++|+| ++.+|++++.+ .|++||
T Consensus 602 ~~~~l~----~~v~~~~~S~-DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 602 KVTEVK----NNLTDLRLSA-DRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp CEEEEE----EEEEEEEECT-TSCEEEEEETT-SCEEEE
T ss_pred cEEEee----cCcceEEECC-CCCEEEEEcCC-cEEEEe
Confidence 754333 5588999999 77788888766 799986
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=1.8e-19 Score=205.13 Aligned_cols=284 Identities=12% Similarity=0.047 Sum_probs=193.8
Q ss_pred ceeEEecCCCC---CeEEEEEcCCCCCEEEEEECC---------CcEEEEecCCCCeeeEEec---CCCCceeeEEEccC
Q 007431 304 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMD---------TKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCND 368 (604)
Q Consensus 304 ~~i~tl~gH~~---~V~~l~fsp~~g~~L~sgs~D---------g~I~IWd~~~~~~~~~~~~---~h~~~V~~l~fspd 368 (604)
++...+.+|.. .|.+++|+|+ |++|++++.+ +.|.+||+ .++++ +.+. +|...+.+++||||
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~-~~l~~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKI-PHGDP-QSLDPPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEES-SSCCC-EECCCTTCCSCCCSBCCBCSS
T ss_pred cEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEEC-CCCce-EeccCCccccccccccEECCC
Confidence 44566677765 4999999999 9999998774 77889999 45554 3333 45556999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-------------------ceEEEEccCCCCCcEEEEEEcCC------
Q 007431 369 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-------------------PYVVKLNPDDDKQNILLAGMSDK------ 423 (604)
Q Consensus 369 g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-------------------~~~~~~~~~~~~~~~lvsg~~dg------ 423 (604)
|+.|++++. +.|++||+.+++.......+.. ...+.|+|++ ..|++++.++
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg---~~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG---TRLAYAAINDSRVPIM 200 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS---SEEEEEEEECTTSCEE
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC---CEEEEEEECCCccceE
Confidence 999999886 7999999999887766544321 1467777765 4566665432
Q ss_pred ----------------------------eEEEEeCCCCceEEEEcCc------CCceeEEEEeCCCCEEEEEeC----CC
Q 007431 424 ----------------------------KIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRRFVTSSD----DK 465 (604)
Q Consensus 424 ----------------------------~I~iwD~~s~~~~~~~~~h------~~~V~~i~~sp~~~~l~sgs~----Dg 465 (604)
.|++||+.+++....+..+ ...+.++.|+|++++|++.+. +.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 8999999998865566544 567899999999998877653 35
Q ss_pred cEEEEECCCCeEEEEeecCCCCcc----cEEEEcCCCCEEEEE--EcCC------eEEEEE-cCCceeecccccccCccc
Q 007431 466 SLRVWEFGIPVVIKYISEPHMHSM----PSISLHPNTNWLAAQ--SLDN------QILIYS-TRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v----~~l~~sp~g~~l~s~--s~Dg------~I~iwd-~~~~~~~~~~~~~~~~~~ 532 (604)
.|++||+.++.....+...+...+ ..++|+|+|+.|+.. ..++ .|.+|+ ...+.. .....+...
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~-- 357 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSG-- 357 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCS--
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecC--
Confidence 799999998876665543333333 378999999977754 4566 466666 333220 001112211
Q ss_pred ccceE-EEEEcCCCCEEEEEcCC---CcEEEEeCCCC--eeEEEEec---CCCcEEEEEEecCCCCEEEEEeCC
Q 007431 533 AGYAC-QVNFSPDGRFVMSGDGE---GKCWFWDWKSC--KVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 533 ~~~v~-~l~~spdg~~L~sgs~d---G~I~iwd~~t~--~~~~~l~~---h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
...+. .++|+|||+.|+..+.+ +.+.||++... .....+.. |...+..++|+|++..++++++..
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 12233 36899999999766554 78999988643 23333443 566788999999544344444433
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.4e-19 Score=186.76 Aligned_cols=293 Identities=11% Similarity=0.015 Sum_probs=196.6
Q ss_pred ceeEEecCCCCCeEE-----EEEcCCCCCEEEEEEC-CCc--EEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE
Q 007431 304 RLVHTWSGHTKGVSA-----IRFFPKYGHLILSAGM-DTK--VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~-----l~fsp~~g~~L~sgs~-Dg~--I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~ 375 (604)
..+..+..|...+.. .+|+|+ |++|+.++. +|. |.+||+ .+++......+|...+..+.|+|+|+.|+.+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 455667777766666 889999 888877776 674 778888 5677766666777777788999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCcce-EEEEccCCCCCcEEEEE----------------------EcCCeEEEEeCCC
Q 007431 376 SYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAG----------------------MSDKKIVQWDMNT 432 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~lvsg----------------------~~dg~I~iwD~~s 432 (604)
+.++.|.+||+.+++....+....... ...+..+.+ +.+++.. ..+..|++||+.+
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCC-CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999999998776665443321 222322222 2444432 2347899999999
Q ss_pred CceEEEEcCcCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCCeEEEEeecCCC-CcccEEEEcCCCCEEEEE
Q 007431 433 KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 433 ~~~~~~~~~h~~~V~~i~~sp-~~~~l~sgs~D------g~I~iwdl~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~s~ 504 (604)
++..... .+...+..+.|+| +++.|+.++.+ ..|.++|+..... ..+..... ..+..++|+|+|+.|+..
T Consensus 178 g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence 8755443 5677899999999 99998887753 3788888765543 33332222 357788999999977665
Q ss_pred EcC-C----eEEEEEcCCceeecccccccCcccc-cceEEEEEcCCCCEEEEE---------cCCCcEEEEeCCCCeeEE
Q 007431 505 SLD-N----QILIYSTRERFQLNKKKRFAGHIVA-GYACQVNFSPDGRFVMSG---------DGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 505 s~D-g----~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~L~sg---------s~dG~I~iwd~~t~~~~~ 569 (604)
+.. + .|++||+.++.... +..+.++... .....+.|+|||+.|+.. ..+..|++||+.+++. .
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 333 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-H 333 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-E
T ss_pred ecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-E
Confidence 542 2 39999998765321 2222221000 001123799999988754 4567899999998876 4
Q ss_pred EEecCCC-----------cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 570 TLKCHEG-----------VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 570 ~l~~h~~-----------~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+..|.. .+.+++|+|++..+++++..+|...||
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 4555555 578899999444344455567877776
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=4.6e-18 Score=176.80 Aligned_cols=270 Identities=7% Similarity=0.090 Sum_probs=178.9
Q ss_pred CCEEEEEE----CCCcEEEEecCC-CCeeeEEecCCCCceeeEEEccCCCEEEEEECC----CcEEEEECCC--CcE--E
Q 007431 326 GHLILSAG----MDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTET--GQV--I 392 (604)
Q Consensus 326 g~~L~sgs----~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D----g~I~vWD~~t--~~~--i 392 (604)
..+++.|+ .++.|.+|.+.. +++.......+...+..++|+|+|++|++++.+ +.|.+|++.. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 356899998742 233222211277888999999999999999886 7999998865 443 3
Q ss_pred EEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE----EE--cC--------cCCceeEEEEeCCCCE
Q 007431 393 RTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ----EY--DQ--------HLGAVNTITFVDSNRR 457 (604)
Q Consensus 393 ~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~----~~--~~--------h~~~V~~i~~sp~~~~ 457 (604)
.... ....+..+.+ + ...++++...++.|.+|++.....+. .+ .+ +...+.+++|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEECSSSCEEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eEeccCCCCcEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3333 2333444444 2 22444445578999999997543221 11 11 1234588999999997
Q ss_pred EEEEe-CCCcEEEEECCCCeE------E------EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee--
Q 007431 458 FVTSS-DDKSLRVWEFGIPVV------I------KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-- 521 (604)
Q Consensus 458 l~sgs-~Dg~I~iwdl~~~~~------~------~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~-- 521 (604)
+++++ .++.|.+|++..... + ..........+..++|+|+|++|++++ .++.|.+|++.++...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 66555 588999999875331 1 233334555678999999999888887 6899999999865321
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCC--CCe--eEEEEecCCCcEEEEEEecCCCCEEEEEe
Q 007431 522 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWK--SCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~--dG~I~iwd~~--t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
........+ ......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+| ++++|++++
T Consensus 249 ~~~~~~~~~--~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~ 324 (361)
T 3scy_A 249 QTVAADTVN--AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVAC 324 (361)
T ss_dssp EEEESCSSC--CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEE
T ss_pred EEEecCCCC--CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEE
Confidence 111111211 233468999999999876665 4899999985 454 4555554 45678999999 666777666
Q ss_pred -CCCcEEEe
Q 007431 596 -WDGLIKYW 603 (604)
Q Consensus 596 -~DG~I~vW 603 (604)
.++.|.+|
T Consensus 325 ~~~~~v~v~ 333 (361)
T 3scy_A 325 RDTNVIQIF 333 (361)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEEE
Confidence 67899996
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3.7e-18 Score=176.42 Aligned_cols=252 Identities=10% Similarity=0.163 Sum_probs=173.0
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEEC--CCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEE
Q 007431 310 SGHTKGVSAIRFFPKYGHLILSAGM--DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYW 384 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~--Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vW 384 (604)
..+...+..++|+|+ +++++++.. ++.|.+|++ ..+. .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEe-cCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 355677889999999 774444432 689999999 4444 4455556788899999999999999888 67999999
Q ss_pred ECC-CCc--EEEEeeCC----------CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-CCceEE--EEcCc-CCcee
Q 007431 385 DTE-TGQ--VIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQ--EYDQH-LGAVN 447 (604)
Q Consensus 385 D~~-t~~--~i~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-s~~~~~--~~~~h-~~~V~ 447 (604)
++. .+. .+..+... ..+..+.+.+++ .+++++..++.|.+|++. ++++.. .+..+ ...+.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg---~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN---RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS---CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC---cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 996 332 33333221 124456777654 377777778999999998 554432 22222 33678
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEECCC--CeE--EEEeecCC-----CCcccEEEEcCCCCEEEE-EEcCCeEEEEEcC
Q 007431 448 TITFVDSNRRFVT-SSDDKSLRVWEFGI--PVV--IKYISEPH-----MHSMPSISLHPNTNWLAA-QSLDNQILIYSTR 516 (604)
Q Consensus 448 ~i~~sp~~~~l~s-gs~Dg~I~iwdl~~--~~~--~~~~~~~~-----~~~v~~l~~sp~g~~l~s-~s~Dg~I~iwd~~ 516 (604)
.++|+|+++++++ +..++.|.+|++.. +.. ...+.... ...+..++|+|+|++|++ ...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996655 56788999999874 432 22222111 134788999999998754 4568999999986
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEE--eCCCCeeE
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW--DWKSCKVF 568 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG~I~iw--d~~t~~~~ 568 (604)
..........+..+ ...+..++|+|+|++|++++. ++.|.+| |..++++.
T Consensus 271 ~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 271 ADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 33222222233222 234567999999998888775 4899999 55667655
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.4e-17 Score=173.10 Aligned_cols=264 Identities=11% Similarity=0.134 Sum_probs=179.9
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECC----CcEEEEecCCC-Ce--eeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGMD----TKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKY 383 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~D----g~I~IWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~v 383 (604)
|...+..++|+|+ +++|++++.+ +.|.+|++... +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 7788899999999 8989888876 89999998543 43 33444446667778888 888888777 4789999
Q ss_pred EECCCCcEEEEe----eC-C----------CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-------e------
Q 007431 384 WDTETGQVIRTF----ST-G----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------I------ 435 (604)
Q Consensus 384 WD~~t~~~i~~~----~~-~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-------~------ 435 (604)
|++.....+..+ .. + ..+..+.+.|++. .+++++..++.|.+|++.... +
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754332211 11 1 1125577777542 455556668999999887543 2
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCeE--EEEeec--CCCCcccEEEEcCCCCEEEEEEcC--C
Q 007431 436 TQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVV--IKYISE--PHMHSMPSISLHPNTNWLAAQSLD--N 508 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~~~--~~~~~~--~~~~~v~~l~~sp~g~~l~s~s~D--g 508 (604)
......+...+.+++|+|+++++++++ .++.|.+|++..+.. +..+.. .+......++|+|+|++|+++..+ +
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 122233456678999999999887776 689999999986644 222221 223446799999999999877765 8
Q ss_pred eEEEEEcC--CceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEe--CCCCeeEEEEe-cCCCcEEEEE
Q 007431 509 QILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWD--WKSCKVFRTLK-CHEGVCIGCE 582 (604)
Q Consensus 509 ~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd--~~t~~~~~~l~-~h~~~V~~v~ 582 (604)
.|.+|++. ++. +.....+.. ...+..++|+|+|++|++++ .++.|.+|. ..++++..... .+...+.|+.
T Consensus 283 ~i~v~~~~~~~g~-~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 283 GVAIFKVDETNGT-LTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp EEEEEEECTTTCC-EEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred EEEEEEEcCCCCc-EEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 99999986 222 111222221 23456799999999988877 678999964 45777654432 2445688888
Q ss_pred Ee
Q 007431 583 WH 584 (604)
Q Consensus 583 ~s 584 (604)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 86
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=7.2e-18 Score=176.20 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=180.7
Q ss_pred EEEEEECC--CcEEEEecC-CCCeeeE--Eec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECC-CCcEEEEee--CC
Q 007431 328 LILSAGMD--TKVKIWDVV-NSGKCMR--TYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFS--TG 398 (604)
Q Consensus 328 ~L~sgs~D--g~I~IWd~~-~~~~~~~--~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~-t~~~i~~~~--~~ 398 (604)
+|++|+.. +.|.+|++. .++.... ... .+...+..++|+|+|++|++++.+ .|.+|++. +++...... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45556543 468777763 2343321 111 244568899999999999999988 99999997 777654332 11
Q ss_pred CcceEEEEccCCCCCc-EEEEEE-------------cCCeEEEEeCC-CCceEEEEc----CcCCceeEEEEeCCCCEEE
Q 007431 399 KIPYVVKLNPDDDKQN-ILLAGM-------------SDKKIVQWDMN-TKEITQEYD----QHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~-~lvsg~-------------~dg~I~iwD~~-s~~~~~~~~----~h~~~V~~i~~sp~~~~l~ 459 (604)
..+..+.+.+++ .. +++++. .++.+.+|++. .+++...+. .+...+.++.|+|+|++|+
T Consensus 83 g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 83 GHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCccEEECCCC--CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 223334444432 22 344442 68999999997 466554443 2556799999999999888
Q ss_pred EEeC-CCcEEEEECC-CCeEE--EEeecC-CCCcccEEEEcCCCCEEEEEEc-CCeEEEEEcC--Cceee---ccccccc
Q 007431 460 TSSD-DKSLRVWEFG-IPVVI--KYISEP-HMHSMPSISLHPNTNWLAAQSL-DNQILIYSTR--ERFQL---NKKKRFA 528 (604)
Q Consensus 460 sgs~-Dg~I~iwdl~-~~~~~--~~~~~~-~~~~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~--~~~~~---~~~~~~~ 528 (604)
+++. ++.|++|++. +++.. ..+..+ +...+..++|+|+|++|++++. ++.|.+|++. ++... .....+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7654 6799999998 56543 223222 3556889999999999988875 6899999875 33221 1111221
Q ss_pred Cccc--cc------ceEEEE-EcCCCCEEEEEcCCC------cEEEEeCC-CCeeEE---EEecCCCcEEEEEEecC--C
Q 007431 529 GHIV--AG------YACQVN-FSPDGRFVMSGDGEG------KCWFWDWK-SCKVFR---TLKCHEGVCIGCEWHPL--E 587 (604)
Q Consensus 529 ~~~~--~~------~v~~l~-~spdg~~L~sgs~dG------~I~iwd~~-t~~~~~---~l~~h~~~V~~v~~sp~--~ 587 (604)
.... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+|. +
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 1100 11 467899 999999988766432 89999996 676543 23345545678899994 4
Q ss_pred CCEEEEEeC-CCcEEEeC
Q 007431 588 QSKVATCGW-DGLIKYWD 604 (604)
Q Consensus 588 ~~~l~tgg~-DG~I~vWD 604 (604)
+++|++++. ++.|.||+
T Consensus 321 g~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TTEEEEECSSSCEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEE
Confidence 667888776 48999995
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=195.29 Aligned_cols=276 Identities=8% Similarity=0.029 Sum_probs=188.1
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC---ceeeEEEccCCCEEEEEEC---------CCcEEEEE
Q 007431 318 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASY---------DKNIKYWD 385 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~L~s~s~---------Dg~I~vWD 385 (604)
+++|+|+ +.++++ +.|+.|++||+ .++++...+.+|.. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~d-g~~~~~-~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISG-QEYLHQ-SADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSS-SEEEEE-CTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCC-CeEEEE-cCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6789999 665554 56999999999 57777766665544 4899999999999998876 78999999
Q ss_pred CCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-cCcCCce-----------------e
Q 007431 386 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV-----------------N 447 (604)
Q Consensus 386 ~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~~~V-----------------~ 447 (604)
+.+++.+...........+.|+|++. .|+.+ .++.|++||+.+++..+.. .++...| .
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGS---KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCC---EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 99988732122234456788888763 45555 4789999999988765432 2222222 5
Q ss_pred EEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCeEE--EEee-----cCCC
Q 007431 448 TITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVI--KYIS-----EPHM 486 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~Dg----------------------------------~I~iwdl~~~~~~--~~~~-----~~~~ 486 (604)
++.|+|+|++|++++.|. .|++||+.++... ..+. ..+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999987652 7889999876542 1221 1366
Q ss_pred CcccEEEEcCCCCEEEEEEcCC----eEEEEE----cCCceeecccc-cccCcccccceE-----EEEEcCCCCEEEE--
Q 007431 487 HSMPSISLHPNTNWLAAQSLDN----QILIYS----TRERFQLNKKK-RFAGHIVAGYAC-----QVNFSPDGRFVMS-- 550 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~Dg----~I~iwd----~~~~~~~~~~~-~~~~~~~~~~v~-----~l~~spdg~~L~s-- 550 (604)
..+..++|+|+++++++....+ .|.+|| +.++....... ...++ ...+. .+.|+|||+.|+.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEE
Confidence 6789999999987776654332 488899 66654332221 00122 22333 5789999996554
Q ss_pred EcCCC--cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC----CCcEEEeC
Q 007431 551 GDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW----DGLIKYWD 604 (604)
Q Consensus 551 gs~dG--~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~----DG~I~vWD 604 (604)
+..+| .|++||+.+++ ...+..+...+..+.++ +++.+++++.. ++.+++|.
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44555 57778887776 44555566668887777 45544445443 47888873
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=8.5e-18 Score=180.22 Aligned_cols=201 Identities=12% Similarity=0.159 Sum_probs=151.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-------C--eeeE-----EecCCCCceeeEEEccCCCEEE----E
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-------G--KCMR-----TYMGHSKAVRDISFCNDGTKFL----T 374 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~-------~--~~~~-----~~~~h~~~V~~l~fspdg~~L~----s 374 (604)
...++.|+++++ +.+|++++.++ |+||+.... . ..+. ....|...|++++|+|+|++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345889999999 88999999888 899875210 0 0111 1123667899999999999999 7
Q ss_pred EECCCcEEEEECCCC--------cEE---EEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc
Q 007431 375 ASYDKNIKYWDTETG--------QVI---RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 442 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~--------~~i---~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h 442 (604)
++.|+.|+|||+.++ +.+ ..+.. ...+..+.|+|. .+.+|++++.||.|++||++++..+.....|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999998765 222 22221 334566777764 3478999999999999999999777777789
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC------CCCcccEEEEcCCCCEEEEEE-cCC------e
Q 007431 443 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQS-LDN------Q 509 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~s-~Dg------~ 509 (604)
...|++++|+|++++|++|+.||.|++||++ +.....+..+ |...+.+++|++++.++++.+ .+| .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999999999999999999998 4444444321 223789999999887776544 333 3
Q ss_pred EEEEEcCCc
Q 007431 510 ILIYSTRER 518 (604)
Q Consensus 510 I~iwd~~~~ 518 (604)
+++|+++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899998754
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=2e-16 Score=162.49 Aligned_cols=245 Identities=13% Similarity=0.125 Sum_probs=171.9
Q ss_pred ceeEEecCCC-CCeEEEEEcCCCCCE-EEEEECCCcEEEEecCCCCeeeEEecCC------CCceeeEEEccCCCEEEEE
Q 007431 304 RLVHTWSGHT-KGVSAIRFFPKYGHL-ILSAGMDTKVKIWDVVNSGKCMRTYMGH------SKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 304 ~~i~tl~gH~-~~V~~l~fsp~~g~~-L~sgs~Dg~I~IWd~~~~~~~~~~~~~h------~~~V~~l~fspdg~~L~s~ 375 (604)
+++.++..+. ..+..++|+|+ +++ ++++..++.|.+||+ .+++.+..+..+ ...+.+++|+|+|++|+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~-~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 109 (349)
T 1jmx_B 32 TVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDL-DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT 109 (349)
T ss_dssp EEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEET-TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred cEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeC-CCCcEEEEEEcccccccccccccceEECCCCCEEEEE
Confidence 4555665443 35889999999 665 456667899999999 577777666533 2348899999999999998
Q ss_pred ECC------------CcEEEEECCCCc---EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc
Q 007431 376 SYD------------KNIKYWDTETGQ---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 376 s~D------------g~I~vWD~~t~~---~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~ 440 (604)
+.+ +.|.+||+.+++ .+..+.....+..+.+.+++ . +++++ +.|.+||+.+++.+..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~-l~~~~--~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG---S-LYVAG--PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS---C-EEEES--SSEEEECTTTCCEEEEEC
T ss_pred cccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC---c-EEEcc--CcEEEEeCCCCceecccc
Confidence 865 899999998854 33445555556667777754 3 44443 449999999999888775
Q ss_pred CcCC------------------------ceeEEEEeCCCCE-----------EEEEeCCCcEEEEECCCCeEEEEeecCC
Q 007431 441 QHLG------------------------AVNTITFVDSNRR-----------FVTSSDDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 441 ~h~~------------------------~V~~i~~sp~~~~-----------l~sgs~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
.+.. ...++.+++++.. +......+.+++|++ ...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 253 (349)
T 1jmx_B 184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----------ADL 253 (349)
T ss_dssp STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE----------EEC
T ss_pred ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc----------ccC
Confidence 4320 2344555544321 112233344444443 224
Q ss_pred CCcccEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 486 MHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 486 ~~~v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
...+..++++| ++++++++ ++.|.+||+.++........ ...+.+++|+|+|++|++++.++.|.+||+.+
T Consensus 254 ~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 254 TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 55788999999 99999888 88999999988765433321 12345799999999999888899999999999
Q ss_pred CeeEEEEecC
Q 007431 565 CKVFRTLKCH 574 (604)
Q Consensus 565 ~~~~~~l~~h 574 (604)
++.+..+..+
T Consensus 326 ~~~~~~~~~~ 335 (349)
T 1jmx_B 326 LEKVKNIKLP 335 (349)
T ss_dssp TEEEEEEECS
T ss_pred cceeeeeecC
Confidence 9999988765
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.75 E-value=4.7e-17 Score=180.79 Aligned_cols=231 Identities=10% Similarity=0.071 Sum_probs=164.7
Q ss_pred CCceeeEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEc---CCeEEE--EeC
Q 007431 357 SKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---DKKIVQ--WDM 430 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---dg~I~i--wD~ 430 (604)
..+|.+++|+|||++|++++. ||+++||++.+++..+ +...+...+....++++ .+++++.. +....+ +++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 567999999999999999887 9999999997665544 44433223333344333 56776664 444455 454
Q ss_pred -CCCceEEEEcCcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-
Q 007431 431 -NTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD- 507 (604)
Q Consensus 431 -~s~~~~~~~~~h~~~V~~i~~sp~~~~-l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D- 507 (604)
..+... .+.. ...+...+|+|+++. +++++.++.+.+||+.++........ .. .+++|+|+|++|++++.+
T Consensus 98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEE
T ss_pred cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcC
Confidence 122222 3332 233456788888753 33444445566999988876554432 21 889999999999988877
Q ss_pred ---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEecCCCcEEEEE
Q 007431 508 ---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCE 582 (604)
Q Consensus 508 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG--~I~iwd~~t~~~~~~l~~h~~~V~~v~ 582 (604)
+.|++||+.++... .+..+ ...+..++|||||++|++++.+| .|++||+.+++.. .+..|...+.+++
T Consensus 172 ~~~~~i~~~d~~~g~~~----~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR----VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp TTEEEEEEEETTTCCCE----EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred CCCeEEEEEcCCCCCce----EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 78999998776533 23333 35568899999999999888888 8999999999888 7777877666677
Q ss_pred --------EecCCCCEEEEEeCCCcEEEeC
Q 007431 583 --------WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 --------~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+|++ .++++++.||.+++|+
T Consensus 245 ~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 245 PTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp CSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred hccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 99954 8999999999999995
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=6.6e-17 Score=169.27 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=179.5
Q ss_pred eEEEEEcCCCCCEEEEEEC-C--CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007431 316 VSAIRFFPKYGHLILSAGM-D--TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~-D--g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
+.+++|+|+ |++|+.+.. + ..|.+|++ ..++......++......+.|+|+|++|+.++.++.|.+||+.+++..
T Consensus 38 ~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQD-GKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCC-CCEEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 788899999 777766644 3 36888888 455554433333333444899999999999999999999999998876
Q ss_pred EEeeCCCcce-E---EEE--------------ccCCCCCcEEEEE-----EcCCeEEEEeCCCCceEEEEcCcCCceeEE
Q 007431 393 RTFSTGKIPY-V---VKL--------------NPDDDKQNILLAG-----MSDKKIVQWDMNTKEITQEYDQHLGAVNTI 449 (604)
Q Consensus 393 ~~~~~~~~~~-~---~~~--------------~~~~~~~~~lvsg-----~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i 449 (604)
.......... . +.+ ...++ +..++.+ ..+..|++||+.+++..... .+...+..+
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHP 193 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccc
Confidence 6554332210 0 111 11111 1222222 35678999999998765554 467789999
Q ss_pred EEeC-CCCEEEEEeCC------CcEEEEECCCCeEEEEeecCC-CCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcC
Q 007431 450 TFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLD-----NQILIYSTR 516 (604)
Q Consensus 450 ~~sp-~~~~l~sgs~D------g~I~iwdl~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~ 516 (604)
.|+| ++..|+.++.+ ..|.+||+...... .+.... ...+..++|+|+|++|+.++.+ +.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999 78877766643 36888898655432 332211 2357788999999988777654 449999987
Q ss_pred CceeecccccccCcccccceEEEEEcC-CCCEEEEEc----------------CCCcEEEEeCCCCeeEEEEecCCC---
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGD----------------GEGKCWFWDWKSCKVFRTLKCHEG--- 576 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs----------------~dG~I~iwd~~t~~~~~~l~~h~~--- 576 (604)
++.... +..+.+ .. +.|+| +|++|++++ .++.|++||+.+++.. .+..+..
T Consensus 273 ~g~~~~-l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~ 343 (396)
T 3c5m_A 273 TLENEE-VMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWD 343 (396)
T ss_dssp TCCEEE-EEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCC
T ss_pred CCCeEE-eeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccc
Confidence 764322 111111 12 78999 999888754 3478999999888754 3444443
Q ss_pred --------cEEEEEEecCCCCEEEEEe-CCCcEEEe
Q 007431 577 --------VCIGCEWHPLEQSKVATCG-WDGLIKYW 603 (604)
Q Consensus 577 --------~V~~v~~sp~~~~~l~tgg-~DG~I~vW 603 (604)
.+..++|+| ++..|+.++ .++...||
T Consensus 344 ~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp CBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEE
T ss_pred cccccccCCCCCceEcc-CCCeEEEEecCCCCceEE
Confidence 256788999 555666555 46666665
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=8e-16 Score=160.69 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=194.0
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCC------CCceeeEEEcc
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH------SKAVRDISFCN 367 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h------~~~V~~l~fsp 367 (604)
+++.++..+..+ .++|+|+ +++|++++ .++.|.+||+ .+.+.+.++..+ ......++|+|
T Consensus 42 ~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDA-DKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEET-TTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred eEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEEC-cCCcEEEEEEcCccccccCCCcceEEECC
Confidence 455677776665 8999999 88888876 3678999998 577777776532 34578899999
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCcEEEE-eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEEE----
Q 007431 368 DGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEY---- 439 (604)
Q Consensus 368 dg~~L~s~s~--Dg~I~vWD~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~~---- 439 (604)
+|++|+++.. ++.|.+||+.+++.+.. +...... .+.+.|.+ ...+++.+.||.+.+|++.. ++.....
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 9999998874 58999999999999888 6654332 23455543 26788899999999999865 5544222
Q ss_pred --cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCC---------CCcccEEEEcCCCCEEEEEEc
Q 007431 440 --DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 440 --~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~~~---------~~~v~~l~~sp~g~~l~s~s~ 506 (604)
..+..++ .+.+.+++..++..+.++.|.++|+.... ....+.... ......++++|+++.++++..
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 1112222 33446677788888889999999986543 222221100 111223789999888877654
Q ss_pred -----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eeEEEEec
Q 007431 507 -----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKC 573 (604)
Q Consensus 507 -----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~--~~~~~l~~ 573 (604)
.+.|.+||+.+.+.+..+ ..+ . +..++|+|||++|++++. +.|.+||..++ +.+.++..
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i---~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARI---PGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEE---ECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEE---ecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 358999999887665443 223 2 667999999999999887 99999999999 99999877
Q ss_pred CCCcEEEEEEecCC
Q 007431 574 HEGVCIGCEWHPLE 587 (604)
Q Consensus 574 h~~~V~~v~~sp~~ 587 (604)
+......++++|++
T Consensus 346 ~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 346 AAEASLQVQFHPVG 359 (361)
T ss_dssp SCSSEEEEEECCCS
T ss_pred CCCCcEEEEecCCC
Confidence 77778999999943
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=6.5e-16 Score=161.31 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=168.4
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-CCCceeeEEEccCCCE--EEEEE------------
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTK--FLTAS------------ 376 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~--L~s~s------------ 376 (604)
+...+..++|+|+ +++|++++.+ .|.+|++..+++....... ..+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 4457889999999 8889988887 9999998425665443321 1134677999999995 44553
Q ss_pred -CCCcEEEEECC-CCcEEEEee-----CCCcceEEEEccCCCCCcEEEEEE-cCCeEEEEeCC-CCceE--EEEc--CcC
Q 007431 377 -YDKNIKYWDTE-TGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMN-TKEIT--QEYD--QHL 443 (604)
Q Consensus 377 -~Dg~I~vWD~~-t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~-s~~~~--~~~~--~h~ 443 (604)
.++.+.+|++. .++....+. ....+..+.++|++ .+++++. .++.|++||+. +++.. ..+. .|.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG---~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE---TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC---CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554433 33456677787754 4455554 47899999998 77653 3333 245
Q ss_pred CceeEEEEeCCCCEEEEEeC-CCcEEEEECC--CCeEE---EEeec-CC-----CC------cccEEE-EcCCCCEEEEE
Q 007431 444 GAVNTITFVDSNRRFVTSSD-DKSLRVWEFG--IPVVI---KYISE-PH-----MH------SMPSIS-LHPNTNWLAAQ 504 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl~--~~~~~---~~~~~-~~-----~~------~v~~l~-~sp~g~~l~s~ 504 (604)
..+..++|+|+++++++++. ++.|.+|++. ++... ..+.. +. .. .+..++ |+|+|++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 67899999999999887765 6899999875 34432 12221 11 11 477899 99999998877
Q ss_pred EcCC------eEEEEEcC-CceeecccccccCcccccceEEEEEcC---CCCEEEEEcCC-CcEEEEeCCCC
Q 007431 505 SLDN------QILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGE-GKCWFWDWKSC 565 (604)
Q Consensus 505 s~Dg------~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~sp---dg~~L~sgs~d-G~I~iwd~~t~ 565 (604)
+.+. .|.+|++. ++...........+ ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6543 89999986 33322111011111 12233588999 89999998864 89999998765
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=188.35 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=187.5
Q ss_pred ceeEEecCCCC---CeEEEEEcCCCCCEEEEEEC---------CCcEEEEecCCCCeee--EEecCCCCceeeEEEccCC
Q 007431 304 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGM---------DTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCNDG 369 (604)
Q Consensus 304 ~~i~tl~gH~~---~V~~l~fsp~~g~~L~sgs~---------Dg~I~IWd~~~~~~~~--~~~~~h~~~V~~l~fspdg 369 (604)
++...+.+|.. .|.+++|||+ |++|++++. ++.|++||+ .+++.+ ..+ ...+.+++|||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~~~l---~~~~~~~~~SPDG 121 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNEL---PRPIQYLCWSPVG 121 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEECCSSCC---CSSBCCEEECSST
T ss_pred cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEEC-CCCccccceec---CcccccceECCCC
Confidence 34455555544 4999999999 899888876 789999999 566552 222 3568999999999
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-------------------eEEEEccCCCCCcEEEEEEcCC-------
Q 007431 370 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSDK------- 423 (604)
Q Consensus 370 ~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~lvsg~~dg------- 423 (604)
+.|+++. ++.|++||+.+++.......++.. ..+.|+|++ ..|++++.|.
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG---~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG---KFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS---SEEEEEEEECTTSCEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC---CEEEEEEECCCCCceEE
Confidence 9999886 789999999998876543232211 367788765 4566666442
Q ss_pred ---------------------------eEEEEeCCCCceE---E-----EEcCcCCceeEEEEeCCCCEEEEEeCCC---
Q 007431 424 ---------------------------KIVQWDMNTKEIT---Q-----EYDQHLGAVNTITFVDSNRRFVTSSDDK--- 465 (604)
Q Consensus 424 ---------------------------~I~iwD~~s~~~~---~-----~~~~h~~~V~~i~~sp~~~~l~sgs~Dg--- 465 (604)
.|++||+.+++.. . .+..|...+.+++|+|+++++++....+
T Consensus 198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~ 277 (719)
T 1z68_A 198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV 277 (719)
T ss_dssp EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE
T ss_pred eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCe
Confidence 7899999988642 1 1235778899999999987776644322
Q ss_pred -cEEEEE----CCCCeEEEEee---cCCCCccc-----EEEEcCCCCEEEE--EEcCC--eEEEEEcCCceeeccccccc
Q 007431 466 -SLRVWE----FGIPVVIKYIS---EPHMHSMP-----SISLHPNTNWLAA--QSLDN--QILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 466 -~I~iwd----l~~~~~~~~~~---~~~~~~v~-----~l~~sp~g~~l~s--~s~Dg--~I~iwd~~~~~~~~~~~~~~ 528 (604)
.|.+|| +.++.....+. ..+...+. .+.|+|+|+.|+. ...++ .|.+|++.++.. ..+.
T Consensus 278 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~~lt 353 (719)
T 1z68_A 278 SVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----IQIT 353 (719)
T ss_dssp EEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----EECS
T ss_pred EEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----Eecc
Confidence 488899 76655433321 34555565 7899999996655 33455 466666655431 1222
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCC--Ce-eEEEEec----CCCcEEEEEEecCCCCEEEEEeC
Q 007431 529 GHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKS--CK-VFRTLKC----HEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t--~~-~~~~l~~----h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
.+ ...+..+.++ +++.|+..+.+ +.+.+|.+.. +. ....+.. |...+..+.|+|++..++++++.
T Consensus 354 ~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 354 SG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp CS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred cC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 22 2235556666 77777766554 7888887753 42 1233332 55667889999955555556654
Q ss_pred C--CcEEEeC
Q 007431 597 D--GLIKYWD 604 (604)
Q Consensus 597 D--G~I~vWD 604 (604)
+ ..+.+||
T Consensus 431 ~~~p~~~l~d 440 (719)
T 1z68_A 431 PGIPISTLHD 440 (719)
T ss_dssp BSSCEEEEEC
T ss_pred CCCCeEEEEE
Confidence 4 3456664
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=4.7e-16 Score=166.60 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=143.2
Q ss_pred CCCCCeEEEEEcCCCCCEEE----EEECCCcEEEEecCCC-----C--e---eeEEecCCCCceeeEEEccC-CCEEEEE
Q 007431 311 GHTKGVSAIRFFPKYGHLIL----SAGMDTKVKIWDVVNS-----G--K---CMRTYMGHSKAVRDISFCND-GTKFLTA 375 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~----sgs~Dg~I~IWd~~~~-----~--~---~~~~~~~h~~~V~~l~fspd-g~~L~s~ 375 (604)
.|...|++++|+|+ +++|+ +|+.|+.|+|||+... . + .+..+.+|...|++++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 46788999999999 88888 7889999999998421 1 1 24666789999999999997 8899999
Q ss_pred ECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-------Ccee
Q 007431 376 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-------GAVN 447 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~-------~~V~ 447 (604)
+.||+|++||++++..+..... ...+.+++|++++ .+|++|+.||.|++||++ ++....+..|. ..|.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 9999999999999876654433 3456778887753 679999999999999998 66666665443 3899
Q ss_pred EEEEeCCCCEEEEE-eCCC------cEEEEECCCCe-----EEEEeecC------CCCcccEEEEcCCCCEEEEEEcC-C
Q 007431 448 TITFVDSNRRFVTS-SDDK------SLRVWEFGIPV-----VIKYISEP------HMHSMPSISLHPNTNWLAAQSLD-N 508 (604)
Q Consensus 448 ~i~~sp~~~~l~sg-s~Dg------~I~iwdl~~~~-----~~~~~~~~------~~~~v~~l~~sp~g~~l~s~s~D-g 508 (604)
++.|++++.++++. +.+| .+++|+++... ....+... ...+...+...++.+++++++.. +
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 99999988776543 3443 38999997541 22222211 11222233444677777666543 3
Q ss_pred eEEEEEc
Q 007431 509 QILIYST 515 (604)
Q Consensus 509 ~I~iwd~ 515 (604)
.|.++..
T Consensus 325 dv~vl~~ 331 (434)
T 2oit_A 325 EVSILAR 331 (434)
T ss_dssp BCEEEEE
T ss_pred ceeEEEe
Confidence 3555543
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=3.6e-15 Score=149.52 Aligned_cols=238 Identities=11% Similarity=0.235 Sum_probs=174.2
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-------CcceEEEEccCCCCCcEEEEEEc-CCeEE
Q 007431 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGMS-DKKIV 426 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~~-dg~I~ 426 (604)
++-..+.+++++++++++++...++.|.+||.. ++.+..+... ..+..+++.. .++.++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 6666666431 2344555522 23355555543 89999
Q ss_pred EEeCCCCceEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCCCCEEEEE
Q 007431 427 QWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 427 iwD~~s~~~~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~ 504 (604)
+|| .+++.+..+.. +...+.++++.++++++++...++.|.+||.. +..+..+.. .+...+..++++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 66777776643 44678999999999988888888999999965 444444432 344568899999999977777
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeeEEEEecCCC--cEEEE
Q 007431 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEG--VCIGC 581 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-~I~iwd~~t~~~~~~l~~h~~--~V~~v 581 (604)
+.++.|.+|+..... +.. +........+..++++++|+++++...++ .|.+|| .+++.+..+..+.. .+.++
T Consensus 182 ~~~~~i~~~~~~g~~-~~~---~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQY-LRQ---IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETTCCE-EEE---ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCCCCE-EEE---EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeE
Confidence 778999999975432 221 21111124567899999999988888776 999999 46777777776543 47899
Q ss_pred EEecCCCCEEEEEeCCCcEEEeC
Q 007431 582 EWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 582 ~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+++| ++.++++ +.|++|++|+
T Consensus 257 ~~~~-~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 257 ALMD-DGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEET-TTEEEEE-ETTTEEEEEE
T ss_pred EECC-CCcEEEE-CCCCeEEEEE
Confidence 9999 6666666 6799999995
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=7.5e-16 Score=173.52 Aligned_cols=286 Identities=7% Similarity=-0.023 Sum_probs=192.2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEE--ECCCcEEEEecCCCCeeeEEecCCCCcee---------eEEEc--cCCCE-E
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSA--GMDTKVKIWDVVNSGKCMRTYMGHSKAVR---------DISFC--NDGTK-F 372 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sg--s~Dg~I~IWd~~~~~~~~~~~~~h~~~V~---------~l~fs--pdg~~-L 372 (604)
..+.+|...|..++|+++ .-++++. +.++...||.. ..+...+.+..|...+. ...|+ |||+. |
T Consensus 17 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 456789999999999987 5566666 55889999997 34455667777877777 67676 99998 7
Q ss_pred EEEEC-CCcEEEEECC--C-CcEEEEeeC------CCcceEEEEccCCCCCcEEEEEEcC----------CeEEEEeCCC
Q 007431 373 LTASY-DKNIKYWDTE--T-GQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSD----------KKIVQWDMNT 432 (604)
Q Consensus 373 ~s~s~-Dg~I~vWD~~--t-~~~i~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~d----------g~I~iwD~~s 432 (604)
+.++. +..|.+|++. . +. ...+.. ......+.|+|++ ..|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPER---GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTT---TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCC---CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76654 5567777765 3 44 333333 2234456777754 456666655 5899999988
Q ss_pred ------CceEEEEc-CcCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECC-CC--eEEEEeecCCCCcccEEEE
Q 007431 433 ------KEITQEYD-QHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFG-IP--VVIKYISEPHMHSMPSISL 494 (604)
Q Consensus 433 ------~~~~~~~~-~h~~~V~~i~~sp~~~~l~sgs~D--------g~I~iwdl~-~~--~~~~~~~~~~~~~v~~l~~ 494 (604)
++.. .+. .+...+..+.|+|+|++|+.++.+ ..|++||+. ++ .....+...+...+..+.|
T Consensus 171 ~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 5543 444 556788899999999999887754 379999998 45 2344444445678899999
Q ss_pred cCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcc----cccceEEEEEcCCCCEEEEEcCCCcEEEE--eCCCCe
Q 007431 495 HPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFW--DWKSCK 566 (604)
Q Consensus 495 sp~g~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~L~sgs~dG~I~iw--d~~t~~ 566 (604)
+|+|+++++++.++ .|.+|++.++....... ..... ....+..++|+|+++++++++. +.++|| |+.+++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99999777777788 56666654443221111 11100 0001346899999999999998 999998 655565
Q ss_pred eEEEEecCCCcEEEE-EEecCCCCEEEEEeCCCcEEEe
Q 007431 567 VFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 567 ~~~~l~~h~~~V~~v-~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+..+..|.+.+..+ ++.+ +.-++++++.+....||
T Consensus 328 -~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp -EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence 67777787777776 4443 22233444555444444
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=6e-15 Score=147.90 Aligned_cols=241 Identities=15% Similarity=0.308 Sum_probs=176.0
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec------CCCCceeeEEEc-cCCCEEEEEEC-CCcEE
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFC-NDGTKFLTASY-DKNIK 382 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~------~h~~~V~~l~fs-pdg~~L~s~s~-Dg~I~ 382 (604)
+|-..+.+|+++++ +.++++...++.|.+|+. .+..+..+. +|...+.+++++ ++++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDK--EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECT--TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECC--CCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45677999999998 888888888999999997 366666664 244678999994 67766665543 78999
Q ss_pred EEECCCCcEEEEeeCCC--cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEE
Q 007431 383 YWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 383 vWD~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--~h~~~V~~i~~sp~~~~l 458 (604)
+|| .+++.+..+.... .+..+.+.+++ .++++...++.|.+||.. ++.+..+. .+...+.+|+++++++++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 999 6677777775433 45566666533 577777778999999964 55666654 355678999999999988
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeecccccccCcccccce
Q 007431 459 VTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
++.+.++.|++||... ..+..+.. .+...+..++++++|+++++...++ .|.+|+.... .+... ..+.....+
T Consensus 179 v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~---~~~~~~~~~ 253 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISAL---ESKVKHAQC 253 (286)
T ss_dssp EEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEE---EESSCCSCE
T ss_pred EEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEE---cccCCCCcc
Confidence 8888899999999854 44444432 2235678999999999888887776 9999996543 22222 222112346
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 537 CQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 537 ~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
..++++|+|+++++ +.+++|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 68999999987777 56899999998654
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.5e-15 Score=158.58 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=187.3
Q ss_pred CCEEEEEE------CCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC----------CCcEEEEECCCC
Q 007431 326 GHLILSAG------MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETG 389 (604)
Q Consensus 326 g~~L~sgs------~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~----------Dg~I~vWD~~t~ 389 (604)
++++++.. .|+.|.+||. .+++.+.++..+..+ .++|+|+|++|++++. ++.|.+||+.++
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCEEEEECCCCCccccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 45555543 3789999998 677888888777665 8999999999998863 578999999999
Q ss_pred cEEEEeeCC-------CcceEEEEccCCCCCcEEEEEE-c-CCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCC-CEE
Q 007431 390 QVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN-RRF 458 (604)
Q Consensus 390 ~~i~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~-~~l 458 (604)
+.+..+... ..+..+.+++++ ++|+++. . ++.|.+||+.+++.+.. +. +.+ ...+.+.|++ ..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg---~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDG---KFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSF 166 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTS---SEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCC---CEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeE
Confidence 998887643 456677888765 4566655 3 68999999999988877 44 222 2335667765 678
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEee-----cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee--ccccccc--
Q 007431 459 VTSSDDKSLRVWEFGI-PVVIKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRFA-- 528 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~-~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~-- 528 (604)
++.+.||.+.+|++.. +....... .....+ ..+.+++++..++..+.++.|.++|+...... .......
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 8899999999999865 44332221 111122 23334677778888888999999998643211 0000000
Q ss_pred ---CcccccceEEEEEcCCCCEEEEEcC-----------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEE
Q 007431 529 ---GHIVAGYACQVNFSPDGRFVMSGDG-----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 529 ---~~~~~~~v~~l~~spdg~~L~sgs~-----------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tg 594 (604)
..........++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|+++
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~ 322 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTL 322 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEE
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEe
Confidence 0000011112789999888877643 3489999999999999999887 89999999 66688888
Q ss_pred eCCCcEEEeC
Q 007431 595 GWDGLIKYWD 604 (604)
Q Consensus 595 g~DG~I~vWD 604 (604)
+. +.|.|||
T Consensus 323 n~-~~v~v~D 331 (361)
T 2oiz_A 323 DG-GNVNVYD 331 (361)
T ss_dssp CS-SCEEEEE
T ss_pred CC-CeEEEEE
Confidence 86 9999997
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=6.2e-16 Score=176.99 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=180.1
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc-----eeeEEEccCCCEEEEEECC---------Cc
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---------KN 380 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~L~s~s~D---------g~ 380 (604)
...+++|+|+ +.+|+++ |++|++||+ .++++...+.+|... ..++.|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 4568899999 8888886 999999999 677777778877643 2347899999999998876 56
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-cCcCCce-------------
Q 007431 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV------------- 446 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~~~V------------- 446 (604)
+.+||+.+++...............|+|++. .|+.+ .++.|++|++.+++..+.. .++...+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 7799999998654333344566778888653 35555 5789999999988755422 2222222
Q ss_pred ----eEEEEeCCCCEEEEEeCCC------------------------------------cEEEEECCC---Ce--EEEEe
Q 007431 447 ----NTITFVDSNRRFVTSSDDK------------------------------------SLRVWEFGI---PV--VIKYI 481 (604)
Q Consensus 447 ----~~i~~sp~~~~l~sgs~Dg------------------------------------~I~iwdl~~---~~--~~~~~ 481 (604)
..+.|+|||++|+.++.|. .|++||+.+ +. ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 3589999999999875332 478899887 62 22233
Q ss_pred ec-----CCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCce----eecccccc-cCcccccce-----EEEEEc
Q 007431 482 SE-----PHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF----QLNKKKRF-AGHIVAGYA-----CQVNFS 542 (604)
Q Consensus 482 ~~-----~~~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~----~~~~~~~~-~~~~~~~~v-----~~l~~s 542 (604)
.. .+...+..++|+|+|+.++..... ..|.+||+.++. +......+ .++ ..++ ..+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~--~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST--TGWVGRFRPSEPHFT 327 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS--SSCSSSSSCCCCEEC
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC--CceEccCcCCCceEc
Confidence 22 256678899999999977665443 369999998765 22111110 112 1222 257899
Q ss_pred CCCCEEE-EEc-CC--CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007431 543 PDGRFVM-SGD-GE--GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 543 pdg~~L~-sgs-~d--G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
|||+.|+ ..+ .+ ..|++||..+++... +......|..+.+ +++..+++++..
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence 9999876 554 33 468889988776554 3333445666543 334444444443
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=4.5e-15 Score=152.72 Aligned_cols=240 Identities=11% Similarity=0.152 Sum_probs=177.4
Q ss_pred CCceeeEEEccCCCEEEEEECC------------------------CcEEEEECCCCcEEEEeeCCC--cceEEEEccCC
Q 007431 357 SKAVRDISFCNDGTKFLTASYD------------------------KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDD 410 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~D------------------------g~I~vWD~~t~~~i~~~~~~~--~~~~~~~~~~~ 410 (604)
-+.+.+|+++++|+++++.+.+ +.|.+||..+++.+..+.... .+..+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568999999999988888777 479999999999887775443 45666766533
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCCc-eEEEE---------cCcCCceeEEEEeC-CCCEEEEEe-CCCcEEEEECCCCeEE
Q 007431 411 DKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------DQHLGAVNTITFVD-SNRRFVTSS-DDKSLRVWEFGIPVVI 478 (604)
Q Consensus 411 ~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~---------~~h~~~V~~i~~sp-~~~~l~sgs-~Dg~I~iwdl~~~~~~ 478 (604)
+++++...++.|++||..... .+..+ ..+......|+++| ++.++++.+ .++.|++|+. .+..+
T Consensus 103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 578888889999999986542 45555 34555789999999 788888886 6899999994 55555
Q ss_pred EEeecC---------CCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-----
Q 007431 479 KYISEP---------HMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP----- 543 (604)
Q Consensus 479 ~~~~~~---------~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp----- 543 (604)
..+... .......++++|+ +.++++...++.|++|+..++..+.... .......+..++|+|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---HASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---CTTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---ccccCCCcceeeecCCEEEE
Confidence 555321 2234789999998 6666776778999999998555443322 111234566788999
Q ss_pred -CCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 544 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 -dg~~L~sgs~dG~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+|+..++...+..|++|+..+++.+..+. .+...+.+++++| ++.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEe
Confidence 33333333345689999999999999884 5667789999999 568888888999999985
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=9.1e-15 Score=150.39 Aligned_cols=243 Identities=13% Similarity=0.198 Sum_probs=179.3
Q ss_pred CCCeEEEEEcCCCCCEEEEEECC------------------------CcEEEEecCCCCeeeEEec-CCCCceeeEEEcc
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMD------------------------TKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCN 367 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~D------------------------g~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fsp 367 (604)
-+.|.+|+++|+ |+++++.+.+ ++|.+||. .+++.+..+. ++......|++++
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCCCccCCceEEEECC
Confidence 356999999999 8999888877 47999998 5677766654 4556789999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-EEEEeeC--------C--CcceEEEEccCCCCCcEEEEEE-cCCeEEEEeCCCCce
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQ-VIRTFST--------G--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEI 435 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~-~i~~~~~--------~--~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~s~~~ 435 (604)
+|+++++...++.|++||..... .+..+.. . ..+..+++.+. ++.++++.+ .++.|++|| .++..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 99988888888999999986542 4444421 1 23556667662 336777775 699999999 56777
Q ss_pred EEEEcC----------cCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCCCCEEEE
Q 007431 436 TQEYDQ----------HLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 436 ~~~~~~----------h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s 503 (604)
+..+.. +......|+++|+ +.++++...++.|++|+..++..+..+.. .+...+..++++| +..+++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 777642 2334899999998 77778888899999999987887777643 3445678899999 433333
Q ss_pred E-------EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 504 Q-------SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 504 ~-------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
. ..+..|++|+..++..+.......++ ...+..++++|+|.++++...+++|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH--FDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC--CSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc--cCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2 23458999998887655443221222 3456789999999888888899999999974
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=3.9e-15 Score=152.62 Aligned_cols=269 Identities=13% Similarity=0.177 Sum_probs=188.5
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
..|.++.|+++ +..++..+.++.+++|. +.....+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 34777888888 66677778889999993 35566677777888999999999988888889999999999888765
Q ss_pred Ee-eCCCcceEEEEccCCCCCcEEEEEEcC----CeEEEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeC---
Q 007431 394 TF-STGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSD--- 463 (604)
Q Consensus 394 ~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~iwD~~s~~~~~~~~--~h~~~V~~i~~sp~~~~l~sgs~--- 463 (604)
.. .....+..+.+.+++ .+++++..+ +.|.+||..++.....+. .+...+.++.++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 44 234456666666543 566666555 689999998887654443 24457899999999988877654
Q ss_pred ---CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCC-ceeeccc-----ccccCcccc
Q 007431 464 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRE-RFQLNKK-----KRFAGHIVA 533 (604)
Q Consensus 464 ---Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~-~~~~~~~-----~~~~~~~~~ 533 (604)
.+.|..++........... ....+..++|+|+++.|+++. .++.|.+|++.. +...... ..+.++
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--- 232 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--- 232 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS---
T ss_pred cCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC---
Confidence 2456666655444332221 233467899999998765554 578999999853 2211110 011111
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC------cEEEEEEecCCCCEEEEEeCC
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~------~V~~v~~sp~~~~~l~tgg~D 597 (604)
..+..++++++|+++++...++.|.+||. .++.+..+..+.. .+.+++|+| ++..|+.++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence 34567999999998888878899999997 5777777765543 578999998 44455544444
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=4.2e-14 Score=145.49 Aligned_cols=254 Identities=11% Similarity=0.045 Sum_probs=187.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
.....+.+.. +.++++...++.|.+||. .+++.+.++. .......++++++++.+++...++.|.+||+.+++...
T Consensus 44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp SCEEEEEEET--TEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ccceEEEEEC--CEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 3456777743 566677777899999999 6788888775 44678999999998544444489999999999999988
Q ss_pred EeeCCC------cceEEEEccCCCCCcEEEEEE-cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC--
Q 007431 394 TFSTGK------IPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-- 464 (604)
Q Consensus 394 ~~~~~~------~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D-- 464 (604)
.+..+. .+..+.+ . ++.++++.. .++.|.++|+.+++.+..+.. ......+.+++++++++++..+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~--~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ--Y--GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE--E--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCT
T ss_pred EEEcCCccccCCCcceEEE--E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCcc
Confidence 887766 5666666 1 224555544 489999999999998887764 3345789999999877777654
Q ss_pred --------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007431 465 --------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 465 --------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
+.|.++|..+.+....+..+.......++++|++++|+++.. .|.+||..++.... ....... ....
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p 269 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKY 269 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCE
T ss_pred CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecCC--CCce
Confidence 789999999988877775544457889999999999888654 89999987765321 1111111 2456
Q ss_pred EEEEEcC-CCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCCCcEEEEEE
Q 007431 537 CQVNFSP-DGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 537 ~~l~~sp-dg~~L~sg----s~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
..++++| ++.+.++. ..++.|.+||.. ++.+.++..... ...++|
T Consensus 270 ~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 270 YGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 6799999 55555665 578999999988 999988875433 355555
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=5.3e-14 Score=144.76 Aligned_cols=254 Identities=13% Similarity=0.073 Sum_probs=169.7
Q ss_pred CeEEEEEcCCCCCEEEEEE---------CCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---C--c
Q 007431 315 GVSAIRFFPKYGHLILSAG---------MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K--N 380 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs---------~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g--~ 380 (604)
.+..+++ + |+.|+... .++.|.+|++ ..++. +.+ ..+..++|+|||++|+.++.+ + .
T Consensus 16 ~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~-~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENL-KNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEET-TTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--C-CcEEEEEEeecCcccCCccceEEEEeC-CCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4666777 5 66665432 2577999998 44443 333 568899999999999988754 2 4
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEc---------------------------CCeEEEEeCCCC
Q 007431 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---------------------------DKKIVQWDMNTK 433 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---------------------------dg~I~iwD~~s~ 433 (604)
|.+|++.+++......... ...+.|+|++ ..|+.++. ...|++||+.++
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDS---RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTS---SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCC---CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 8888998888766655444 5666777654 34554442 257999999998
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-------cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007431 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg-------~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
+.+..+.. . .+..+.|+|++ ++++++.++ ...||.+.++. ...+.. + ..+.. ++|+|++|+.++.
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~-~-~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE-K-VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE-E-ESEEE--EEECSSCEEEEEC
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEecc-C-cceee--ECCCCCEEEEEEc
Confidence 77455544 3 78899999999 777776542 34455444443 333332 2 33433 4999999988875
Q ss_pred C--------CeEEEEEcCCceeecccccccCcccccceEE-EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCc
Q 007431 507 D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 577 (604)
Q Consensus 507 D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~ 577 (604)
+ ..|.+|+ ++... ....++ ...+.. +.|+ +| ++++++.++.++|| +.+++... +..+.+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~---~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~ 303 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVM---GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHW 303 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEE---ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSE
T ss_pred cccCCccccceEEEEC--CCceE---eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCe
Confidence 4 3677777 33221 112222 234554 8899 88 88999999999999 88766544 4446778
Q ss_pred EEEEEEecCCCCEEEEEeCCCcE-EEe
Q 007431 578 CIGCEWHPLEQSKVATCGWDGLI-KYW 603 (604)
Q Consensus 578 V~~v~~sp~~~~~l~tgg~DG~I-~vW 603 (604)
|.+++|+| .++++++.++.. .||
T Consensus 304 v~~~~~s~---~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 304 IMGFDVDE---IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEESS---SEEEEEECSSSCCEEE
T ss_pred EEeeeeeC---cEEEEEcCCCChHHhe
Confidence 99999998 577887777654 555
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=9.2e-13 Score=131.91 Aligned_cols=274 Identities=12% Similarity=0.104 Sum_probs=189.3
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE-EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007431 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
+..+...+.+|++.++ +.++++...++.|.+|+.. +.... .+..+...+.+++++++|.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 4456678999999999 8877776668899999983 43332 223356779999999999988877768899999986
Q ss_pred CCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 388 TGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 388 t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
++. ..+. ....+..+.+.++ +.++++...++.|.+||. +++.... ...+...+.++++.++++.+++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 443 3332 2334455555543 356666667889999999 5554433 2334567899999999988887777
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
++.|.+||. ++.............+.++++++++.++++...++.|.+|+. ++.... . .... ....+..+++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~--~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-F-KIPT--PNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E-ECSS--TTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-E-ECCC--CCCCceeEEECC
Confidence 889999998 555443322233456789999999987766666789999998 443221 1 1111 134577899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEE--ecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007431 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l--~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
+|+++++...++.|..||. +++. ..+ ..+...+.++++ + ++.++++.+.++.++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~-~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-D-GETIWFAMECDKIGK 290 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-C-SSCEEEEETTTEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-c-CCCEEEEecCCcEEE
Confidence 9997777767899999998 4543 333 344567899999 6 666666655444433
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=6.2e-14 Score=146.51 Aligned_cols=250 Identities=14% Similarity=0.066 Sum_probs=169.7
Q ss_pred CCCeeeEEecCCCCceee-----EEEccCCCEEEEEEC-CC--cEEEEECCCCcEEEEeeCCCcce-EEEEccCCCCCcE
Q 007431 345 NSGKCMRTYMGHSKAVRD-----ISFCNDGTKFLTASY-DK--NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNI 415 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~-----l~fspdg~~L~s~s~-Dg--~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~ 415 (604)
.++..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++............ ...|+|++ ..
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg---~~ 94 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD---DA 94 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS---SE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC---CE
Confidence 567777888888766665 899999999999887 66 48889999988776654443332 45677755 56
Q ss_pred EEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEE--EeCCCCEEEEE----------------------eCCCcEEEEE
Q 007431 416 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT--FVDSNRRFVTS----------------------SDDKSLRVWE 471 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~--~sp~~~~l~sg----------------------s~Dg~I~iwd 471 (604)
|+.+..++.|++||+.+++....+..+...+.... +++++.+++.. ..+..|.+||
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 88888889999999999988777776666665444 47899888743 2346799999
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcC-CCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007431 472 FGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
+.++....... +...+..+.|+| +|+.|+.++.+ ..|.++++...... .+..+.....+..+.||||
T Consensus 175 ~~~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 175 LKTGESTVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp TTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTT
T ss_pred CCCCceEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCC
Confidence 98886554432 445688999999 99999888764 37888887654322 1222211134667899999
Q ss_pred CCEEEEEcC-CC----cEEEEeCCCCeeEE--EEecCCCc---EEEEEEecCCCCEEEE-E--------eCCCcEEEeC
Q 007431 545 GRFVMSGDG-EG----KCWFWDWKSCKVFR--TLKCHEGV---CIGCEWHPLEQSKVAT-C--------GWDGLIKYWD 604 (604)
Q Consensus 545 g~~L~sgs~-dG----~I~iwd~~t~~~~~--~l~~h~~~---V~~v~~sp~~~~~l~t-g--------g~DG~I~vWD 604 (604)
|+.|+..+. ++ .|++||+.+++... .+..+... ...++|+|+ +..|+. . +.+..|.+||
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD-GSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE-ECCC------------CCCCEEEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC-CCcceeEeeeccccccCCCCEEEEEe
Confidence 997765432 22 39999999987533 33321110 111368994 444443 2 4466788886
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1.6e-13 Score=141.07 Aligned_cols=256 Identities=10% Similarity=0.076 Sum_probs=184.6
Q ss_pred CCcEEEEecCCCCeeeEEec------CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEcc
Q 007431 335 DTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 408 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~------~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~ 408 (604)
++.|.++|. .+++....+. .......++.+. +++++++...++.|.+||..+++.+.++.....+..+.+.+
T Consensus 16 ~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 789999998 5666554431 122446778774 45555666667999999999999999987777777888766
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-----CceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCeEEEEee
Q 007431 409 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~-----~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~~~~~~~~ 482 (604)
++ .++++...++.|.+||+.+++....+.... .....+++ .++..+++.. .++.|.++|+.+......+.
T Consensus 94 ~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 94 DE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 43 444444489999999999998887775433 14567777 4444444444 48899999999998888775
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcC----------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007431 483 EPHMHSMPSISLHPNTNWLAAQSLD----------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~D----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
. ......++++|+|++++++..+ +.|.++|..+.........-. ......++|+|++++|+++.
T Consensus 170 ~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~----g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 170 I--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL----GDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp C--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT----TCCCEEEEECTTSCEEEEES
T ss_pred c--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC----CCCceeEEEecCCCEEEEEc
Confidence 4 3346788999999877776554 789999998765443222111 12466799999999999886
Q ss_pred CCCcEEEEeCCCCeeEEE--EecCCCcEEEEEEecCCCCEEEEE----eCCCcEEEeC
Q 007431 553 GEGKCWFWDWKSCKVFRT--LKCHEGVCIGCEWHPLEQSKVATC----GWDGLIKYWD 604 (604)
Q Consensus 553 ~dG~I~iwd~~t~~~~~~--l~~h~~~V~~v~~sp~~~~~l~tg----g~DG~I~vWD 604 (604)
. .|.+||..+++.... +..+.....+++++|+++.++++. ..++.|.+||
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 6 899999998876421 122245689999999777777777 6788999987
No 179
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.62 E-value=5.5e-15 Score=169.08 Aligned_cols=237 Identities=11% Similarity=0.150 Sum_probs=161.7
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc------eEEEEccCCCCCcEEEEEEcC---------
Q 007431 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLNPDDDKQNILLAGMSD--------- 422 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~------~~~~~~~~~~~~~~lvsg~~d--------- 422 (604)
....++.|+|+|.+|+++ |+.|++||+.++++...+..+... ....++|++ ..|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg---~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG---QFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS---SEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC---CEEEEEECCeeeEEEccc
Confidence 346789999999888886 899999999999987776554321 125667654 566776665
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC---------------
Q 007431 423 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--------------- 487 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~--------------- 487 (604)
+.+.+||+.+++.. .+..|.+.+...+|+|+|+.|+.++ ++.|++|++..+........++..
T Consensus 92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 66789999998754 4566778899999999999999885 689999999877654432222221
Q ss_pred --cccEEEEcCCCCEEEEEEcCC------------------------------------eEEEEEcCC---cee--eccc
Q 007431 488 --SMPSISLHPNTNWLAAQSLDN------------------------------------QILIYSTRE---RFQ--LNKK 524 (604)
Q Consensus 488 --~v~~l~~sp~g~~l~s~s~Dg------------------------------------~I~iwd~~~---~~~--~~~~ 524 (604)
....+.|+|||++|+..+.|. .|.+||+.+ +.. ...+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 224589999999999886442 467778776 421 1111
Q ss_pred cc---ccCcccccceEEEEEcCCCCEEEEEcC----CCcEEEEeCCCCe----eE--EEE--ecCCCcEE-----EEEEe
Q 007431 525 KR---FAGHIVAGYACQVNFSPDGRFVMSGDG----EGKCWFWDWKSCK----VF--RTL--KCHEGVCI-----GCEWH 584 (604)
Q Consensus 525 ~~---~~~~~~~~~v~~l~~spdg~~L~sgs~----dG~I~iwd~~t~~----~~--~~l--~~h~~~V~-----~v~~s 584 (604)
.. +.++ ..++..++|||||++++.... +..|++||+.+++ +. ..+ ..|...|. ...|+
T Consensus 250 ~~~~~~~~~--~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 250 TAPASMLIG--DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp CCCHHHHTS--CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred cCCccCCCC--CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 10 0112 467889999999997765532 3479999999887 21 222 44554443 68899
Q ss_pred cCCCCEEE-EEe-CCCc--EEEeC
Q 007431 585 PLEQSKVA-TCG-WDGL--IKYWD 604 (604)
Q Consensus 585 p~~~~~l~-tgg-~DG~--I~vWD 604 (604)
| +++.|+ ..+ .+|. |.+||
T Consensus 328 p-DG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 328 L-DGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp T-TSSEEEEEEECTTSCEEEEEEE
T ss_pred C-CCCEEEEEEEcCCCceEEEEEE
Confidence 9 555555 555 4554 55543
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=9e-13 Score=145.33 Aligned_cols=272 Identities=11% Similarity=0.089 Sum_probs=196.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC--CCcEEEEeeCCCcceE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTGKIPYV 403 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~--t~~~i~~~~~~~~~~~ 403 (604)
+.++++...+++|.++|. .+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+..+..+..
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 456777778999999999 67788877763 3456799999999999999999999999996 8899999988888888
Q ss_pred EEEc----cCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc-----------CCceeEEEEeCCCCEE-EEEeCCCcE
Q 007431 404 VKLN----PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-----------LGAVNTITFVDSNRRF-VTSSDDKSL 467 (604)
Q Consensus 404 ~~~~----~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-----------~~~V~~i~~sp~~~~l-~sgs~Dg~I 467 (604)
+.++ |++ ..++++...++.|.++|..+.+.+..+... ...+..+..++++..+ +.....|.|
T Consensus 245 ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 245 IETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 8888 343 255566666799999999999988876532 1257788888876654 455667999
Q ss_pred EEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccccc-ccCcccccceEEEEEcCCC
Q 007431 468 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg 545 (604)
.++|+...................+.|+|++++|++++ .++.|.++|+.++........ -... +.+....+ ++|++
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P-hpg~g~~~-~~p~~ 400 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-HPGRGANF-VHPTF 400 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-CCTTCEEE-EETTT
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC-CCccceee-ECCCC
Confidence 99999876433332223344567889999999988776 568999999998865544432 1111 11111122 68875
Q ss_pred CEE-EEEc-CCCcEEEEeCCC-------CeeEEEEecCCCcEEEEEEecCCCCEEEEEeC-------CCcEEEeC
Q 007431 546 RFV-MSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYWD 604 (604)
Q Consensus 546 ~~L-~sgs-~dG~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~-------DG~I~vWD 604 (604)
..+ +++. .++.|.++|..+ .+.+.++......-..+..+| ++.+|..... .+.|.|+|
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEE
Confidence 544 4443 568999999988 778888886544434577899 5666665442 35787775
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=1.9e-12 Score=142.70 Aligned_cols=296 Identities=16% Similarity=0.139 Sum_probs=199.3
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC-CCCeeeEEecCCCCceeeEEEc----cCCCEEEEEEC
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFC----NDGTKFLTASY 377 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~-~~~~~~~~~~~h~~~V~~l~fs----pdg~~L~s~s~ 377 (604)
.+++.++... ..+.++.|+|+ +++|++++.|+.|.+||+. .+.+.+..+.... ....++|+ |+|++++++++
T Consensus 187 ~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 187 YEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp CCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEE
T ss_pred CeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEc
Confidence 4566666533 35679999999 8999999999999999993 3667777776533 46799999 69998887766
Q ss_pred -CCcEEEEECCCCcEEEEeeCCC----------cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE--EEcCcCC
Q 007431 378 -DKNIKYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLG 444 (604)
Q Consensus 378 -Dg~I~vWD~~t~~~i~~~~~~~----------~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~--~~~~h~~ 444 (604)
+++|.|+|..+.+.+..+.... .+.+..+.....+..+++.....|.|.++|....+... .+ ....
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~ 342 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAER 342 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCS
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccc
Confidence 5999999999999998876532 11222232223334566666778999999998764322 22 2344
Q ss_pred ceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCeEEEEeec-CC-CCcccEEE-EcCCCCEEEEEE--cCCeEEEEEcCCc
Q 007431 445 AVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYISE-PH-MHSMPSIS-LHPNTNWLAAQS--LDNQILIYSTRER 518 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~~~~~~~~~-~~-~~~v~~l~-~sp~g~~l~s~s--~Dg~I~iwd~~~~ 518 (604)
...++.|+|++++|+++. .++.|.++|+.+.+.+..+.. .. .++-..+. ++|++..+.+.+ .++.|.+++....
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 567889999999887665 578999999999988777654 11 11112333 588755555444 4589999998762
Q ss_pred ee----ecccccccCcccccceEEEEEcCCCCEEEEEcC-------CCcEEEEeCCCC-----e-eEEEEec--------
Q 007431 519 FQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------EGKCWFWDWKSC-----K-VFRTLKC-------- 573 (604)
Q Consensus 519 ~~----~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-------dG~I~iwd~~t~-----~-~~~~l~~-------- 573 (604)
.. ......+... ......+..+|++++|++... .+.|.++|+.+. . .+..+..
T Consensus 423 ~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 423 GHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred CCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 11 1111222221 112233778999999998763 359999999876 2 2234431
Q ss_pred CCCcEEEEEEecCCCCEEEEEe----CCCcEEEeC
Q 007431 574 HEGVCIGCEWHPLEQSKVATCG----WDGLIKYWD 604 (604)
Q Consensus 574 h~~~V~~v~~sp~~~~~l~tgg----~DG~I~vWD 604 (604)
....+..+.|+|++...+++.. .++.|.|+|
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 2457899999995555555543 378888876
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.61 E-value=2.9e-14 Score=160.49 Aligned_cols=257 Identities=9% Similarity=-0.026 Sum_probs=161.8
Q ss_pred eEEecCCCCCeE---------EEEEc--CCCCCE-EEEEE-CCCcEEEEecCCCC-eeeEEecC-----CCCceeeEEEc
Q 007431 306 VHTWSGHTKGVS---------AIRFF--PKYGHL-ILSAG-MDTKVKIWDVVNSG-KCMRTYMG-----HSKAVRDISFC 366 (604)
Q Consensus 306 i~tl~gH~~~V~---------~l~fs--p~~g~~-L~sgs-~Dg~I~IWd~~~~~-~~~~~~~~-----h~~~V~~l~fs 366 (604)
.+.+.+|...|. ...|+ |+ ++. |+.++ .+..|.+|++...+ .....+.. |...+.+++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence 345556665555 56666 88 555 55444 35666666662002 34555655 67789999999
Q ss_pred cCCCEEEEEECC----------CcEEEEECCC------CcEEEEe-eCCCcceEEEEccCCCCCcEEEEEEcC-------
Q 007431 367 NDGTKFLTASYD----------KNIKYWDTET------GQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSD------- 422 (604)
Q Consensus 367 pdg~~L~s~s~D----------g~I~vWD~~t------~~~i~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d------- 422 (604)
|||+.|++++.+ ..|.+||+.+ +...... ..........++|++ ..|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG---~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG---RQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS---SEEEEEEECTTCCTTT
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC---CEEEEEECCCCCCCCC
Confidence 999999999877 5899999988 6554333 223333445677654 456655544
Q ss_pred -CeEEEEeCC-CC---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCeEEEEeecCCCCc-------
Q 007431 423 -KKIVQWDMN-TK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYISEPHMHS------- 488 (604)
Q Consensus 423 -g~I~iwD~~-s~---~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~~------- 488 (604)
..|++||+. ++ +.......|...+..+.|+|+|+++++++.++ .|.+||+..+... .+...+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTP 294 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCST
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccc
Confidence 489999999 57 44444555678899999999999888888888 5666666555543 332222211
Q ss_pred -ccEEEEcCCCCEEEEEEcCCeEEEE--EcCCceeecccccccCcccccceEEE-EEcCCCCEEEEEcCCC--cEEEEeC
Q 007431 489 -MPSISLHPNTNWLAAQSLDNQILIY--STRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEG--KCWFWDW 562 (604)
Q Consensus 489 -v~~l~~sp~g~~l~s~s~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~L~sgs~dG--~I~iwd~ 562 (604)
+..++++|++.++++++. +.+.|| ++.++. + ..+..+ ...+..+ +++.+.-++++++.+. .|++||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~---~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L---VDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E---EECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E---EEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 567899999999999988 999999 444443 2 223333 2334444 4433332333444443 5667777
Q ss_pred CCCeeEEEEecC
Q 007431 563 KSCKVFRTLKCH 574 (604)
Q Consensus 563 ~t~~~~~~l~~h 574 (604)
.+++.......|
T Consensus 368 ~~g~~~~l~~~~ 379 (662)
T 3azo_A 368 VTGRARTIGARH 379 (662)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCceEEeecCC
Confidence 777654433333
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=5e-13 Score=134.70 Aligned_cols=245 Identities=11% Similarity=0.123 Sum_probs=175.4
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCC-EEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
..+..+..+.....+++|+|+ ++ +++++..++.|.+|+. ..+ ...+..+...+.+++++++|+++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSD-DGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEET-TSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEEC-CCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344566677778899999999 66 8888889999999998 344 667777888899999999999877776678999
Q ss_pred EEECCCCcEEEEeeC-----CCcceEEEEccCCCCCcEEEE----EE-------------cCCeEEEEeCCCCceEEEEc
Q 007431 383 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GM-------------SDKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 383 vWD~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~-------------~dg~I~iwD~~s~~~~~~~~ 440 (604)
+||..+++....... ...+..+.+.+++ .++++ |+ ..+.|..++.. ++. ..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee
Confidence 999988876544321 1223446666533 56665 32 14578778776 543 3445
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCeE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007431 441 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~-~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
.+....+.++|+|+++.+++.+.++.|.+|++. .+.. ...+ ......+.+++++++|+++++. ++.|.+|+..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 567778999999999998777888999999986 4433 2333 3455567889999999866665 8899999986
Q ss_pred CceeecccccccCcccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~-spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
. ..+. .+..+ .. +.+++| +|+++.|++++.+ .|.-++..+.++.
T Consensus 246 g-~~~~---~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 246 G-DELG---RVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp S-CEEE---EEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred C-CEEE---EEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 3 3332 22222 22 667888 6899999888865 5666677666543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=3.9e-13 Score=135.52 Aligned_cols=241 Identities=9% Similarity=0.027 Sum_probs=167.9
Q ss_pred CeeeEEecCCCCceeeEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCe
Q 007431 347 GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
+..+..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+.. ...+..+.+.+++ .++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCe
Confidence 344555666677788999999998 7778888999999999987 444433 3445566666643 56666666789
Q ss_pred EEEEeCCCCceEEEEcCc----CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEeec
Q 007431 425 IVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h----~~~V~~i~~sp~~~~l~sgs~-----------------Dg~I~iwdl~~~~~~~~~~~ 483 (604)
|.+||..+++........ ...++.++++|+|+++++.+. .+.|..++.. +.. ..+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~- 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI- 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-
Confidence 999999888765443322 235678999999998887321 2355555544 333 3332
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007431 484 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
........++|+|+++.|++.+.++.|.+|++. ++........+.. ....+..++++++|+++++. ++.|.+||.
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 345567899999999999666678999999986 3322011111211 13345569999999877666 789999997
Q ss_pred CCCeeEEEEecCCCcEEEEEEe-cCCCCEEEEEeCCCcEEE
Q 007431 563 KSCKVFRTLKCHEGVCIGCEWH-PLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 563 ~t~~~~~~l~~h~~~V~~v~~s-p~~~~~l~tgg~DG~I~v 602 (604)
. ++.+..+..+.. +.+++|. | ++..|+.++.+|.+++
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEEE
T ss_pred C-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEEE
Confidence 6 888888888877 8999995 6 6677888887766554
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=3.6e-13 Score=153.27 Aligned_cols=243 Identities=10% Similarity=0.048 Sum_probs=167.2
Q ss_pred CCCceeeEEEccCCCEEEEEECCC-----cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCe------
Q 007431 356 HSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK------ 424 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg-----~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~------ 424 (604)
|...+..++|||||++|+.++.++ .|++||+.+++.+...........+.|++++ ..|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG---KGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS---SEEEEEECCCCSSCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC---CEEEEEEECCccccccc
Confidence 445688999999999998776543 8999999999887643322224557788765 45666666654
Q ss_pred ----------EEEEeCCCCce--EEEEc--CcCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCC------Ce-EE
Q 007431 425 ----------IVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGI------PV-VI 478 (604)
Q Consensus 425 ----------I~iwD~~s~~~--~~~~~--~h~~~V~~i~~sp~~~~l~sgs~-----Dg~I~iwdl~~------~~-~~ 478 (604)
|++|++.++.. ...+. .|...+..+.|+|++++|+.++. +..|++||+.. +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988752 23333 35566889999999999887764 56899999976 42 23
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007431 479 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 554 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d 554 (604)
..+.. +...+.. .|+|+|+.|+..+.. +.|.+|++.+.... ....+..+.....+..++|++++.++++...+
T Consensus 280 ~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 34432 3334433 588899988877754 35999998765311 11222233222356678898888888888888
Q ss_pred Cc--EEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC---CCcEEEeC
Q 007431 555 GK--CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 604 (604)
Q Consensus 555 G~--I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~---DG~I~vWD 604 (604)
+. |++|++.+++.+..+..+.+.+.++.++|++..++++.+. .+.|.+||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 84 6677877888888888888888999999944444444443 35677775
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=6.7e-14 Score=146.24 Aligned_cols=249 Identities=10% Similarity=-0.013 Sum_probs=165.2
Q ss_pred ecCCCCeeeEEecCCCCc-----eeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcce-EEEEccCCCC
Q 007431 342 DVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDK 412 (604)
Q Consensus 342 d~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~ 412 (604)
|. .++..+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+++............ ...|+|++
T Consensus 16 d~-~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-- 92 (396)
T 3c5m_A 16 DS-DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-- 92 (396)
T ss_dssp CT-TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS--
T ss_pred cC-CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC--
Confidence 54 566666666655443 7889999999998877553 478889999887655433332222 25667654
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeE-------------------EEEeCCCCEEEEE-----eCCCcEE
Q 007431 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT-------------------ITFVDSNRRFVTS-----SDDKSLR 468 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~-------------------i~~sp~~~~l~sg-----s~Dg~I~ 468 (604)
..|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|+
T Consensus 93 -~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 93 -RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp -SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred -CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 57888888889999999998876666545443322 3456666665543 3566899
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcC-CCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007431 469 VWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
+||+.++...... .+...+..+.|+| ++..|+..+.+ ..|.+|++....... +..+.....+..++|
T Consensus 172 ~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 172 KVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHEFW 245 (396)
T ss_dssp EEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEEEE
T ss_pred EEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccceEE
Confidence 9999887765444 2456788999999 78877776654 358888876543221 111111234667899
Q ss_pred cCCCCEEEEEcCC-----CcEEEEeCCCCeeEEEEecCCCcEEEEEEec-CCCCEEEEEe----------------CCCc
Q 007431 542 SPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCG----------------WDGL 599 (604)
Q Consensus 542 spdg~~L~sgs~d-----G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~tgg----------------~DG~ 599 (604)
+|+|++|+.++.+ +.|++||+.+++...... ..+ +. +.|+| ++ .+|++++ .++.
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCc
Confidence 9999987766543 449999999887654332 222 33 88998 55 4776654 2467
Q ss_pred EEEeC
Q 007431 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|.+||
T Consensus 322 i~~~d 326 (396)
T 3c5m_A 322 LYVLN 326 (396)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88885
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.3e-12 Score=130.96 Aligned_cols=244 Identities=14% Similarity=0.107 Sum_probs=183.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC--cce
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPY 402 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~--~~~ 402 (604)
+++|++++.++.|.+||. .+++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+. ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 589999999999999998 6899999998776 5789999999999888 45788999999 899999998753 233
Q ss_pred EEEEccCCCCCcEEEEEEc-CCeEEEEeCCCCceEEEEcC------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007431 403 VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 475 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~s~~~~~~~~~------h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~ 475 (604)
...+.++ ++++++.+. ++.|..+|. +++.+..+.. +......+.+.++++++++.+.++.|.+||.. +
T Consensus 81 ~~~~~~d---G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 81 TARILPD---GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEECTT---SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccEECCC---CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 4444443 367777777 788988886 7777776642 22345667889999999999999999999998 8
Q ss_pred eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc--cCcccccceEEEEEcCCCCEEEEEcC
Q 007431 476 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
+.+..+... ..+.++...++++++++++.++.|..+|..++..+...... .+. ....+..+...++|.++++...
T Consensus 156 ~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 156 QLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-QLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp CEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-CCSEEEEEEECTTSCEEEEEEC
T ss_pred CEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-cccccccceEcCCCCEEEEecc
Confidence 777776542 45667888999999999888889999999877766544321 111 1234677889999999888741
Q ss_pred --C------CcEEEEeC-CCCeeEEEEecCC--CcEEEE
Q 007431 554 --E------GKCWFWDW-KSCKVFRTLKCHE--GVCIGC 581 (604)
Q Consensus 554 --d------G~I~iwd~-~t~~~~~~l~~h~--~~V~~v 581 (604)
. +..+++.+ .+++.+.++..+. +.+.++
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 1 23455555 6889988887554 244444
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=7e-12 Score=128.22 Aligned_cols=243 Identities=13% Similarity=0.124 Sum_probs=165.8
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC----C
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----K 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D----g 379 (604)
.....+.++...+.+++|+|+ +.+++++..++.|.+||. ..++.......+...+.+++|+++|+++++...+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINP-ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECT-TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeC-CCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 455677788888999999998 888888888999999998 4555554444567889999999999888877666 6
Q ss_pred cEEEEECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007431 380 NIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTIT 450 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~~V~~i~ 450 (604)
.|.+||..++.....+. ....+..+.+.+++ .++++... .+.|..+|..+++..... .+...+.+++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCC---CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceE
Confidence 89999998887654432 22334556666543 45555443 367888887766544332 3345688999
Q ss_pred EeCCCCEEE-EEeCCCcEEEEECCC-CeEEE----E-e-ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 451 FVDSNRRFV-TSSDDKSLRVWEFGI-PVVIK----Y-I-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 451 ~sp~~~~l~-sgs~Dg~I~iwdl~~-~~~~~----~-~-~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
|+|+++.|+ +.+.++.|.+||+.. +.... . . .......+..++++++|+++++...++.|.+|+... ..+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEE
Confidence 999998654 555678999999963 22111 1 1 111124677899999999888887889999999843 3322
Q ss_pred cccccc---CcccccceEEEEEcCCCCEEEEEcCCC
Q 007431 523 KKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 523 ~~~~~~---~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
...... ++ ...+.+++|+|+++.|++++.++
T Consensus 268 ~~~~~~~~~g~--~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 QILIPGRDEGH--MLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTTGGGTC--SCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcCCCcccc--ccCcceEEECCCCCEEEEEeCcc
Confidence 221110 11 01466799999988887666553
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=8e-13 Score=130.80 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=167.3
Q ss_pred CeEEEEEcCCCCCEEE-EEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 315 GVSAIRFFPKYGHLIL-SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~-sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
...+|+++++ +.+++ +.+.++.|.+|+. ...........+...+.+|+++++|+++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLAT-GSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecC-CCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 6789999998 77777 5477899999987 33322222223445788999999998666555 889999998766543
Q ss_pred EeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007431 394 TFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 394 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
.+... ..+..+.+.++ +.++++...++.|.+|+..+.............+.+++++++++++++...++.|.+||
T Consensus 101 ~~~~~~~~~p~~i~~~~~---g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQ---GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ECCCCSCSSEEEEEECTT---CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeecCCcCCCcceEECCC---CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 33222 34556666653 35777777789999998766554433333345678999999999888877788999999
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007431 472 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 551 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg 551 (604)
.......... ......+.+++++++|.++++...++.|.+|+........ ... .+ ...+..++++++|+++++.
T Consensus 178 ~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~-~~--~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPF-TG--LNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCC-CS--CSCEEEEEECTTCCEEEEE
T ss_pred cCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ecc-CC--CCCceeEEECCCCCEEEEE
Confidence 8776544332 2233568899999999777776678899999986543221 111 11 1356789999999988898
Q ss_pred cCCCcEEEEeCCCCe
Q 007431 552 DGEGKCWFWDWKSCK 566 (604)
Q Consensus 552 s~dG~I~iwd~~t~~ 566 (604)
..++.|+++++...+
T Consensus 252 ~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHH 266 (270)
T ss_dssp GGGTEEEEECCCGGG
T ss_pred CCCCEEEEEcCCCcc
Confidence 999999999987654
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=3.2e-11 Score=120.64 Aligned_cols=274 Identities=11% Similarity=0.056 Sum_probs=186.4
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE-EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
.....+.+|++.++ +.++++...++.|.+|+.. ++... .+..+...+.++++.++|+++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34567899999998 8888877778999999983 44333 233344678999999999877777667899999988 6
Q ss_pred cEEEEeeC---CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeCCC
Q 007431 390 QVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDK 465 (604)
Q Consensus 390 ~~i~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~~~l~sgs~Dg 465 (604)
+.. .+.. ...+..+.+.+. +.++++...++.|..||.. ++.... +......+.++++.++++++++...++
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CeE-EecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 553 3322 234555555543 3566666668899999988 655432 233456789999999999777777788
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007431 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 545 (604)
.|..||. .+.............+.++++++++.++++....+.|.+|+....... .. .... ...+..++++++|
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~--~~-~~~~--~~~~~~i~~d~~g 241 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE--YD-IPTP--NARPHAITAGKNS 241 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE--EE-CSST--TCCEEEEEECSTT
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEE--EE-CCCC--CCCceEEEECCCC
Confidence 8999998 444443222233456789999999987776666778999998332211 11 1111 2456789999999
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEEE-EecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 546 RFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 546 ~~L~sgs~dG~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
++.++...++.|..|+. +++.... +......+.++++.+ ++.++++.. . .|..+
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKL 296 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEe
Confidence 97777777899999998 4544322 222345678899988 555555444 4 55544
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=4.1e-11 Score=125.40 Aligned_cols=267 Identities=9% Similarity=-0.018 Sum_probs=180.8
Q ss_pred CCCCCEEEEEEC--CC---cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE----------CCCcEEEEECC
Q 007431 323 PKYGHLILSAGM--DT---KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTE 387 (604)
Q Consensus 323 p~~g~~L~sgs~--Dg---~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s----------~Dg~I~vWD~~ 387 (604)
|+ +++++++.. .. +|.++|. .+++.+.++.....+ .++|+|||++|+++. .++.|.+||+.
T Consensus 30 ~~-~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 30 AD-GRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CC-CCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 55 566666553 22 8899999 577888777654444 999999999999886 36789999999
Q ss_pred CCcEEEEeeCC--------CcceEEEEccCCCCCcEEEEEE-c-CCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCC-
Q 007431 388 TGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN- 455 (604)
Q Consensus 388 t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~- 455 (604)
+.+.+..+..+ ..+..+.++|++ ..|+++. . ++.|.++| .+++.+.. +... + |+.+.|.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG---~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~ 177 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNN---ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAP 177 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCC---CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCC
Confidence 99988887654 345567777765 4566555 3 58899999 99998877 5422 2 24455554
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeec----CCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eccccccc
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--LNKKKRFA 528 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~~-v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~ 528 (604)
+.+++.+.||.+.++|. ++........ ....+ .....+.+++..++..+..+.+.+.|+..... ........
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 46677888999999999 7766533220 11111 12344566665555555788999999865321 11111000
Q ss_pred C-----cccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC-EEE
Q 007431 529 G-----HIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVA 592 (604)
Q Consensus 529 ~-----~~~~~~v~~l~~spdg~~L~sgs~----------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~ 592 (604)
. .........+.++|+++.|+++.. .+.|.++|..+++.+.++.... ...+++|+| +++ +++
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~-Dg~~~l~ 334 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQ-DGGPDLY 334 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECC-CCCeEEE
Confidence 0 000122334789999998887643 3579999999999999997433 578999999 555 777
Q ss_pred EEe-CCCcEEEeC
Q 007431 593 TCG-WDGLIKYWD 604 (604)
Q Consensus 593 tgg-~DG~I~vWD 604 (604)
++. .++.|.|||
T Consensus 335 v~~~~~~~V~ViD 347 (373)
T 2mad_H 335 ALSAGTEVLHIYD 347 (373)
T ss_pred EEcCCCCeEEEEE
Confidence 777 489999987
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.2e-12 Score=145.40 Aligned_cols=244 Identities=12% Similarity=0.093 Sum_probs=164.9
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCC-----cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc-----
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDT-----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 380 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg-----~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~----- 380 (604)
+|+..+..++|||+ |++|+.++.++ .|++||+ .+++.+.....+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~-~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKV-DGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEET-TTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccc
Confidence 45567899999999 88887665533 8999999 5676665333222 3778999999999999988776
Q ss_pred -----------EEEEECCCCcE--EEEeeCC-Cc--ceEEEEccCCCCCcEEEEEEc-----CCeEEEEeCCC------C
Q 007431 381 -----------IKYWDTETGQV--IRTFSTG-KI--PYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMNT------K 433 (604)
Q Consensus 381 -----------I~vWD~~t~~~--i~~~~~~-~~--~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~s------~ 433 (604)
|++|++.+++. ...+... +. .....+++++ ..|+.++. +..|++||+.+ +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG---RYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC---CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999998762 2233322 22 3455666644 34544443 67899999986 5
Q ss_pred c-eEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCe--EEEEeecCCC-CcccEEEEcCCCCEEEEEE
Q 007431 434 E-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPV--VIKYISEPHM-HSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 434 ~-~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg----~I~iwdl~~~~--~~~~~~~~~~-~~v~~l~~sp~g~~l~s~s 505 (604)
. ....+..+...+.. .|++++..|+..+..+ .|.+||+..+. ....+..... ..+..++|++++.++++..
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3 34555566666655 4788888877766533 59999998763 1233332222 3677889988788888888
Q ss_pred cCCe--EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc----CCCcEEEEeCCCCe
Q 007431 506 LDNQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD----GEGKCWFWDWKSCK 566 (604)
Q Consensus 506 ~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs----~dG~I~iwd~~t~~ 566 (604)
.++. |.+|++.++..... +..+ .+.+..++++|++..|+... ..+.|++||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~---l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKI---FPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEE---ECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEe---cCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8885 55566645443322 2223 45677889999997666332 35789999998877
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.53 E-value=2e-12 Score=132.83 Aligned_cols=232 Identities=12% Similarity=0.148 Sum_probs=154.3
Q ss_pred CCeEEEEEcCCCCCEEEEEECC---C--cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC----------
Q 007431 314 KGVSAIRFFPKYGHLILSAGMD---T--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---------- 378 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~D---g--~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---------- 378 (604)
..+.+++|+|+ |+.|+.++.+ + .|.+|++ ..++.......+ . +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADL-ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEET-TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEEC-CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 46889999999 8877776653 3 3777787 455555444333 3 9999999999999888743
Q ss_pred -----------------CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC---------CeEEEEeCCC
Q 007431 379 -----------------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---------KKIVQWDMNT 432 (604)
Q Consensus 379 -----------------g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d---------g~I~iwD~~s 432 (604)
..|.+||+.+++.+..+... ....+.+++++ +++++..+ ..|+++| +
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeC--C
Confidence 57999999998874444333 55666777643 66666543 2466666 5
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeecCCCCcccE-EEEcCCCCEEEE
Q 007431 433 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPNTNWLAA 503 (604)
Q Consensus 433 ~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D--------g~I~iwdl~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~s 503 (604)
++.. .+..+ ..+..+ +|+|++|+.++.+ ..|.+|| .+. ...+...+...+.. +.|+ ++ ++++
T Consensus 208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEE
Confidence 5443 33334 455544 9999988887754 3577777 443 34444445667776 8999 88 8899
Q ss_pred EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE-EEEeCCCCeeEEEEecCCC
Q 007431 504 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC-WFWDWKSCKVFRTLKCHEG 576 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I-~iwd~~t~~~~~~l~~h~~ 576 (604)
++.++.++|| +.++.. ..+..+ ...+.+++|+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 279 ~~~~~~~~l~-~~~g~~----~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI----KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEETTEEEEE-EESSSE----EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EecCCcEEEE-EcCCce----EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999999 874322 112222 35677899999 677777777654 666665 54 344554443
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2.4e-12 Score=127.32 Aligned_cols=235 Identities=6% Similarity=-0.001 Sum_probs=162.3
Q ss_pred ceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007431 359 AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 359 ~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
...+++++++|++++ +.+.++.|.+||..++....... ....+..+.+.+++ .++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG---TVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC---CEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC---CEEEEcC-CCEEEEEeCCCceEe
Confidence 678899999998777 44678999999987654332211 22345566666543 4555544 889999998776543
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007431 437 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
.........+.++++.++++++++...++.|.+|+.......... ......+.+++++++++++++...++.|.+|+..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 322233367899999999998888778889999987655433222 2233467899999999977776677899999987
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007431 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
........ . .. ...+..++++++|.++++...++.|.+|+............+...+.++++++ ++.++++...
T Consensus 180 ~~~~~~~~--~-~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQVVLP--F-TD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRG 253 (270)
T ss_dssp TCCEEECC--C-SS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGG
T ss_pred CCceEeec--c-cC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECC
Confidence 65432211 1 11 14567899999998888887889999999876554332223335689999999 5678888888
Q ss_pred CCcEEEeC
Q 007431 597 DGLIKYWD 604 (604)
Q Consensus 597 DG~I~vWD 604 (604)
++.|++++
T Consensus 254 ~~~v~~~~ 261 (270)
T 1rwi_B 254 NDRVVKLT 261 (270)
T ss_dssp GTEEEEEC
T ss_pred CCEEEEEc
Confidence 99999985
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=7.5e-12 Score=130.29 Aligned_cols=271 Identities=15% Similarity=0.065 Sum_probs=185.1
Q ss_pred cCCCCCEEEEEEC-----CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE----------CCCcEEEEEC
Q 007431 322 FPKYGHLILSAGM-----DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDT 386 (604)
Q Consensus 322 sp~~g~~L~sgs~-----Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s----------~Dg~I~vWD~ 386 (604)
.|+ ++.+++... ++.|.+.|. .+.+.+.++.....+ .++++|||++|++++ .++.|.+||.
T Consensus 41 ~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 41 APD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 466 666666654 679999999 688888888755555 499999999888775 3678999999
Q ss_pred CCCcEEEEeeCC--------CcceEEEEccCCCCCcEEEEEE-c-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007431 387 ETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 387 ~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
.+++.+..+..+ ..+..+.+.+++ ..++++. . ++.|.++|+.+++.+.++.... + ...+....+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG---k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~ 190 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPD 190 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETT
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCC---CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCc
Confidence 999999988653 256778888865 4555554 3 6899999999999998885322 1 222333456
Q ss_pred EEEEEeCCCcEEEEECCC-CeEEEEeec---CCCCcc-cEEEEc-CCCCEEEEEEcCCeEEEEEcCCce--eeccccccc
Q 007431 457 RFVTSSDDKSLRVWEFGI-PVVIKYISE---PHMHSM-PSISLH-PNTNWLAAQSLDNQILIYSTRERF--QLNKKKRFA 528 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~-~~~~~~~~~---~~~~~v-~~l~~s-p~g~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~ 528 (604)
.|++.+.||++.+.++.. ++....... ....++ ....|. ++|++++ .+.+|.|+++|+.+.. .......+.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence 788888999999999976 443322111 111222 124554 5675544 5668999999986543 121111010
Q ss_pred -----CcccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEE
Q 007431 529 -----GHIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 529 -----~~~~~~~v~~l~~spdg~~L~sgs~----------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~t 593 (604)
..........++++++++.|+.... .+.|.++|+.+++.+..+... ..+.+|++++++..+|++
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEE
T ss_pred cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEE
Confidence 1111122234778999998887643 257999999999999998753 367899999955446655
Q ss_pred -EeCCCcEEEeC
Q 007431 594 -CGWDGLIKYWD 604 (604)
Q Consensus 594 -gg~DG~I~vWD 604 (604)
...++.|.++|
T Consensus 349 tn~~~~~VsViD 360 (386)
T 3sjl_D 349 LSTGDKTLYIHD 360 (386)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEE
Confidence 45589999886
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=8.8e-11 Score=122.89 Aligned_cols=251 Identities=7% Similarity=-0.047 Sum_probs=172.7
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCC-------CCceeeEEEc
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFC 366 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~fs 366 (604)
+++.++..-..+ .++++|+ +++|+.+. .++.|.+||. .+.+.+..+.-. ...-..+.|+
T Consensus 58 ~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~-~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred eEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEEC-CCCcEEEEEECCCccccccCCCccceEEC
Confidence 455666544444 9999999 88877775 3678999999 566666655321 1234689999
Q ss_pred cCCCEEEEEEC--CCcEEEEECCCCcEEEE-eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---
Q 007431 367 NDGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--- 440 (604)
Q Consensus 367 pdg~~L~s~s~--Dg~I~vWD~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--- 440 (604)
|||++|+++.. ++.|.++| .+++.+.. +..... +.+.+.+. ..+++.+.||.+.++|. +++.+....
T Consensus 134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 99999998875 47899999 99999888 655432 34444433 56778888999999999 887664322
Q ss_pred --CcCCc-eeEEEEeCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecC---------CCCcccEEEEcCCCCEEEEEEc
Q 007431 441 --QHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEP---------HMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 441 --~h~~~-V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~~---------~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
....+ .....+.+++..++..+..+.|.+.|+.... .+..+... .......+.++|+++.+++...
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 11112 1234556666555555578899999986542 22222110 0122334788999988887653
Q ss_pred ----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007431 507 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 507 ----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs-~dG~I~iwd~~t~~~~~~l 571 (604)
.+.|.++|+.+...+..+.. ......++|+|||+ +++++. .++.|.+||..+++.+.++
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 35799999988766554422 12356799999999 777777 5899999999999999884
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=9.8e-12 Score=124.57 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=164.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCC--cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-C
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-G 444 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~-~ 444 (604)
.+++|++++.++.|.+||.++|+.+..+..+. .+..+.+.+++ ++++ +.++.|+.||. +++.+..+..+. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 46789999999999999999999999998765 46677777754 5666 45788999999 899999998653 5
Q ss_pred ceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCeEEEEeecC-----CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007431 445 AVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP-----HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl~~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
.+.++.+.++++++++.+. ++.|..+|. .++.+..+... +......+++.++|++|++.+.++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777877875 55555554321 11235567889999999999999999999987 6
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC------CcEEEEEEecCCCCEEE
Q 007431 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE------GVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~------~~V~~v~~sp~~~~~l~ 592 (604)
..+...... .....+.+.++|++++++..+++|..+|..+|+.+..+..+. ..+.+++..+ ++.+++
T Consensus 156 ~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEE
T ss_pred CEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEE
Confidence 555433321 223357788999999999988999999999999999997542 1277888888 666776
Q ss_pred EE
Q 007431 593 TC 594 (604)
Q Consensus 593 tg 594 (604)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=3.6e-13 Score=152.89 Aligned_cols=241 Identities=9% Similarity=-0.030 Sum_probs=156.3
Q ss_pred CCCCceeeEEEccCCCEEEE-----EECCCcEEEEECCCCcEE-EEeeCCCcceEEEEccCCCCCcEEEEEEcCCe----
Q 007431 355 GHSKAVRDISFCNDGTKFLT-----ASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK---- 424 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s-----~s~Dg~I~vWD~~t~~~i-~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~---- 424 (604)
+|...+..++|||||++|+. |+.+..|++||+.+++.+ ...........+.|++++ ..|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg---~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS---KGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS---SEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC---CEEEEEEecCCCCCc
Confidence 45567999999999999984 334568999999999865 211111112467777755 46777777665
Q ss_pred ---------EEEEeCCCCc----eEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCeEEEEeecCCCC
Q 007431 425 ---------IVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 425 ---------I~iwD~~s~~----~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg----~I~iwdl~~~~~~~~~~~~~~~ 487 (604)
|++|++.++. ++.....|...+.++.|+|+|++|+.++.++ .|++|+...+... .+.. +..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~-~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK-GVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE-CSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec-CCC
Confidence 9999998875 3333334556789999999999988877666 6777766544332 2322 333
Q ss_pred cccEEEEcCCCCEEEEEEc----CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 488 SMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.+....+ +++. |+..+. ++.|.+|++.++.... ...+..+.....+..++|+ ++.++++...++..+||.+.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 4555555 5666 555443 5789999987653210 1112222112345667887 77788888889988887654
Q ss_pred -CCeeEEEEecC-CCcEEEEEEecCCCCEEEEEeC---CCcEEEeC
Q 007431 564 -SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 604 (604)
Q Consensus 564 -t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg~---DG~I~vWD 604 (604)
+++....+..+ .+.+..+.++|++..++++.+. .++|.+||
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 46666666655 5677888899944444444433 36687775
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.7e-11 Score=127.51 Aligned_cols=266 Identities=11% Similarity=0.067 Sum_probs=183.8
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCC-------CCceeeEEE
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF 365 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~f 365 (604)
.+++.++..-..+ .++++|+ +++|++++ .++.|.+||. .+.+.+.++.-. ...-..+.|
T Consensus 69 ~~v~~~I~vG~~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CeEEEEEECCCCC--cEEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCeEEEEEECCCccccccCCCCceEEE
Confidence 4566666654445 4999999 77666654 3678999999 677777776422 124678999
Q ss_pred ccCCCEEEEEEC--CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEEEcCc
Q 007431 366 CNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQH 442 (604)
Q Consensus 366 spdg~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~~~~h 442 (604)
+|||++|+++.. ++.|.++|+.+++.+.++..... ..+.|.+ ...+++.+.||++.+.++.+ ++.......+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 999999998874 68999999999999999976542 3333433 25677889999999999986 6654332222
Q ss_pred C----Cce-eEEEEe-CCCCEEEEEeCCCcEEEEECCCCe--EEEEeec---------CCCCcccEEEEcCCCCEEEEEE
Q 007431 443 L----GAV-NTITFV-DSNRRFVTSSDDKSLRVWEFGIPV--VIKYISE---------PHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 443 ~----~~V-~~i~~s-p~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~---------~~~~~v~~l~~sp~g~~l~s~s 505 (604)
. .++ ....|. ++|++++ .+.+|.|++.|+.... ....+.. -.......++++++++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 1 122 124555 5664444 6668999999996553 3332220 0122345688899999888875
Q ss_pred c----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeeEEEEec
Q 007431 506 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 506 ~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sg-s~dG~I~iwd~~t~~~~~~l~~ 573 (604)
. .+.|.++|+.+...+..+.. ...+..|.+++|++ +|++. ..++.|.++|..+++.+.++..
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 3 25799999998876654432 23456799999997 66664 4589999999999999999985
Q ss_pred CCCcEEEEEEec
Q 007431 574 HEGVCIGCEWHP 585 (604)
Q Consensus 574 h~~~V~~v~~sp 585 (604)
-..+ ..+.+++
T Consensus 373 ~~~p-~~l~~s~ 383 (386)
T 3sjl_D 373 LGHG-PQVITTA 383 (386)
T ss_dssp CCSS-CCEEEEC
T ss_pred CCCC-ceeEECC
Confidence 4332 4556665
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=1.2e-11 Score=124.89 Aligned_cols=242 Identities=12% Similarity=0.125 Sum_probs=162.5
Q ss_pred cCCCCceeeEEEccCCCEEEE-------EECCCcEEEEECCCCcEEEEee-----CCCcceEEEEccCCCCCcEEEEEEc
Q 007431 354 MGHSKAVRDISFCNDGTKFLT-------ASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMS 421 (604)
Q Consensus 354 ~~h~~~V~~l~fspdg~~L~s-------~s~Dg~I~vWD~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~ 421 (604)
...-....+++|+++|+++++ +..++.|.+||..+++...... ....+..+.+.++ .+. +++++.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~--~g~-l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQ-LFVADM 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSE-EEEEET
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC--CCc-EEEEEC
Confidence 334456789999999988877 5778999999998887654322 1233445555543 123 445555
Q ss_pred CCeEEEEeCCCCceEEE-EcC----cCCceeEEEEeCCCCEEEEEeCC---------------CcEEEEECCCCeEEEEe
Q 007431 422 DKKIVQWDMNTKEITQE-YDQ----HLGAVNTITFVDSNRRFVTSSDD---------------KSLRVWEFGIPVVIKYI 481 (604)
Q Consensus 422 dg~I~iwD~~s~~~~~~-~~~----h~~~V~~i~~sp~~~~l~sgs~D---------------g~I~iwdl~~~~~~~~~ 481 (604)
.+.|.+||.. ++.... ... ....+.++++.++++++++...+ +.|..|+.. +......
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 5689999998 765433 221 12358899999999888877655 567777765 4333222
Q ss_pred ecCCCCcccEEEEc----CCCCEEEEEE-cCCeEEEEEcC-Cceeec--ccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007431 482 SEPHMHSMPSISLH----PNTNWLAAQS-LDNQILIYSTR-ERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 482 ~~~~~~~v~~l~~s----p~g~~l~s~s-~Dg~I~iwd~~-~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
. .......++++ |+++.|+++. .++.|.+|+.. ++.... ....+.++. ......++++++|+++++...
T Consensus 169 ~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 T--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp E--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEET
T ss_pred c--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcC
Confidence 1 23345788999 9997666654 57899999976 332110 111122210 034567999999998888878
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC-EEEEEeCCCcEEEeC
Q 007431 554 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIKYWD 604 (604)
Q Consensus 554 dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~tgg~DG~I~vWD 604 (604)
++.|.+||..+++.+..+..+...+.+++|+| ++. ++++...++.|..||
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEe
Confidence 89999999988888888887777899999998 566 555555667787764
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=1.4e-12 Score=147.92 Aligned_cols=243 Identities=13% Similarity=0.033 Sum_probs=156.6
Q ss_pred CCCCCeEEEEEcCCCCCEEE-----EEECCCcEEEEecCCCCeeeEEecCCCCce--eeEEEccCCCEEEEEECCCc---
Q 007431 311 GHTKGVSAIRFFPKYGHLIL-----SAGMDTKVKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASYDKN--- 380 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~-----sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~L~s~s~Dg~--- 380 (604)
+|...+.+++|||+ |++|+ +|+.+.+|++||+ .+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl-~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDV-DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEET-TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEEC-CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 56678999999999 78777 3344568999999 5565431 1122223 68999999999999998876
Q ss_pred ----------EEEEECCCCcE--EEEeeCC---CcceEEEEccCCCCCcEEEEEEcCC----eEEEEeCCCCceEEEEcC
Q 007431 381 ----------IKYWDTETGQV--IRTFSTG---KIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTKEITQEYDQ 441 (604)
Q Consensus 381 ----------I~vWD~~t~~~--i~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~dg----~I~iwD~~s~~~~~~~~~ 441 (604)
|++|++.++.. ...+... .......+++++ ..|+.++.++ .|++|+..+++... +..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~ 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG---KYLFVYILRGWSENDVYWKRPGEKDFRL-LVK 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS---CCEEEEEEETTTEEEEEEECTTCSSCEE-EEE
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC---CEEEEEEeCCCCceEEEEEcCCCCceEE-eec
Confidence 99999998862 2333321 233455666654 3444444444 78888776665443 434
Q ss_pred cCCceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCeE--EEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007431 442 HLGAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVV--IKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sgs---~Dg~I~iwdl~~~~~--~~~~~~~~-~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
+...+....+ +++.+++++. .++.|.+||+.++.. ...+...+ ...+..++++ ++.++++...|+..+||.+
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 5556666666 4555444443 257899999977642 22333223 4567788888 6778888889998888865
Q ss_pred C-CceeecccccccCcccccceEEEEEcCCCCEEEEEc----CCCcEEEEeCCCCee
Q 007431 516 R-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD----GEGKCWFWDWKSCKV 567 (604)
Q Consensus 516 ~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs----~dG~I~iwd~~t~~~ 567 (604)
. .+..... +..+ ..+.+..++++|++..|+... ..+.|++||+.+++.
T Consensus 348 ~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 348 TLKGKPVRT---VQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTCCEEEE---CCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eCCCCeeEE---ecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 2222211 1111 024455678899998776332 357899999988764
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.45 E-value=1.2e-10 Score=116.40 Aligned_cols=236 Identities=11% Similarity=-0.015 Sum_probs=164.1
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC
Q 007431 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 432 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s 432 (604)
.+...+.++++.++|+++++...++.|.+||.. ++...... ....+..+.+.++ +.++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-
Confidence 455679999999999977776668899999998 65443221 2234455555543 3566666668899999986
Q ss_pred CceEEEEc--CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 433 KEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 433 ~~~~~~~~--~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
++. ..+. .....+.++++.++++++++...++.|.+||. .+.............+..+++++++.++++...++.|
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 433 2232 34567899999999988888877889999998 4444333322344568899999999877776667899
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE-EecCCCcEEEEEEecCCCC
Q 007431 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQS 589 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~ 589 (604)
.+|+. ++.... . ..... ...+..++++++|++.++...++.|.+||. +++.... +..+...+.++++.+ ++.
T Consensus 165 ~~~~~-~g~~~~-~-~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~ 237 (299)
T 2z2n_A 165 GRITE-SGDITE-F-KIPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GID 237 (299)
T ss_dssp EEECT-TCCEEE-E-ECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTC
T ss_pred EEEcC-CCcEEE-e-eCCCC--CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCC
Confidence 99998 433221 1 11111 234668999999998877777889999998 6664432 223456789999998 566
Q ss_pred EEEEEeCCCcEEEeC
Q 007431 590 KVATCGWDGLIKYWD 604 (604)
Q Consensus 590 ~l~tgg~DG~I~vWD 604 (604)
++++...++.|.+||
T Consensus 238 l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 238 LWFTEWGANKIGRLT 252 (299)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeccCCceEEEEC
Confidence 666665677888775
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=2.1e-10 Score=115.76 Aligned_cols=234 Identities=11% Similarity=0.081 Sum_probs=155.5
Q ss_pred CCCCceeeEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007431 355 GHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 355 ~h~~~V~~l~fspdg-~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
.+..-..+..|++++ .++++...++.|..||..++.. ..+.....+..+.+.+++ . ++++. ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG---~-l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG---G-YVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS---S-EEEEE-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC---C-EEEEE-CCeEEEEECCCC
Confidence 344456688999954 4555666789999999998765 345555666677776644 3 44444 678999999888
Q ss_pred ceEEEEcC----cCCceeEEEEeCCCCEEEEEeCC---------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCE
Q 007431 434 EITQEYDQ----HLGAVNTITFVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 500 (604)
Q Consensus 434 ~~~~~~~~----h~~~V~~i~~sp~~~~l~sgs~D---------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 500 (604)
+....... ....++.+.++|+|+++++.... ....||.+........+. ........++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCE
Confidence 65443322 12457899999999977655322 234555554322222221 12334678999999997
Q ss_pred EEEEE-cCCeEEEEEcC--Cceeecc--cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007431 501 LAAQS-LDNQILIYSTR--ERFQLNK--KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 501 l~s~s-~Dg~I~iwd~~--~~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
|+++. .++.|.+|++. ++..... ...+.. .......++++++|++.++....+.|..||..+++.+..+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 76554 56889999973 3322111 111111 12456679999999888888778899999999999999999887
Q ss_pred CcEEEEEEe-cCCCCEEEEEeCC
Q 007431 576 GVCIGCEWH-PLEQSKVATCGWD 597 (604)
Q Consensus 576 ~~V~~v~~s-p~~~~~l~tgg~D 597 (604)
..+++++|. |+...+++|...+
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCceEEEEeCCCCCEEEEEcCCc
Confidence 789999998 7444455555543
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=1.2e-10 Score=123.32 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=162.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC--cEEEEECCCCcE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQV 391 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg--~I~vWD~~t~~~ 391 (604)
.....|+|+++ ++++++...++.|++||. ..+........ ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~-~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISV-DDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEET-TTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEEC-CCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 45789999998 788888777899999998 45555544443 33334 99999999999998866 799999877665
Q ss_pred EEEe----e-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE----EcCcCCce--eEEEEeCC-CCEEE
Q 007431 392 IRTF----S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----YDQHLGAV--NTITFVDS-NRRFV 459 (604)
Q Consensus 392 i~~~----~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~----~~~h~~~V--~~i~~sp~-~~~l~ 459 (604)
...+ . ....+..+.+.+.. +. |+++..++.|+.||..++..... ..++...- +.++|+|+ +.+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--EW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--SE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--Ce-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 4444 2 33455667776632 23 45577789999999987764332 22222222 39999995 66666
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecC-------------CCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccc
Q 007431 460 TSSDDKSLRVWEFGIPVVIKYISEP-------------HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~-------------~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~ 525 (604)
+...++.|+.|+...... ...... .......++++|+|+++++-+ .++.|+.|++.++.......
T Consensus 284 ~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 667788999999765422 111111 023467899999999777766 78999999976654221111
Q ss_pred c--ccCc-------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007431 526 R--FAGH-------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 526 ~--~~~~-------~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
. ..+. ..-.....++++++|.++++-..+++|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0 0000 00134678999999888888888888888764
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=3.8e-11 Score=127.07 Aligned_cols=257 Identities=12% Similarity=0.035 Sum_probs=178.8
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE----------CCCcEEEEECCCCcEEEEeeCC-------
Q 007431 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG------- 398 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s----------~Dg~I~vWD~~t~~~i~~~~~~------- 398 (604)
+.|.+.|. .+.+.+.++..-..+ .+.++|||++|+++. .++.|.++|..+++.+..+..+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 68999999 688888888755555 899999999988876 3678999999999999888653
Q ss_pred -CcceEEEEccCCCCCcEEEEEEc--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 007431 399 -KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI 474 (604)
Q Consensus 399 -~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~ 474 (604)
..+..+.+++++ ..++++.. ++.|.++|+.+++.+..+.-.. +....|+ .+.+++.+.||.+.+.++..
T Consensus 176 g~~P~~~~~spDG---k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 176 GTYQWMNALTPDN---KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp SCCGGGSEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred CCCcceEEEcCCC---CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 346677787765 45665553 6899999999999988876422 1233333 35677778888888888855
Q ss_pred CeEEEEe----ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee--cccccc-----cCcccccceEEEEEcC
Q 007431 475 PVVIKYI----SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRF-----AGHIVAGYACQVNFSP 543 (604)
Q Consensus 475 ~~~~~~~----~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~-----~~~~~~~~v~~l~~sp 543 (604)
.+..... ..........+.+.+++..++..+..+.|.+.|....... ...... ...........++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 5444221 1111111234567889888888888899999998654311 110000 0000011111368999
Q ss_pred CCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC-EEEEEe-CCCcEEEeC
Q 007431 544 DGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCG-WDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~----------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~tgg-~DG~I~vWD 604 (604)
+++.+++... .+.|.++|..+.+.+.++.... ...+++|+| +++ +++++. .++.|.|+|
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~sp-Dg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQ-DAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEcc-CCCEEEEEEcCCCCeEEEEE
Confidence 9998777642 3579999999999999997543 478999999 555 777776 589999987
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=2.4e-11 Score=138.95 Aligned_cols=238 Identities=11% Similarity=0.045 Sum_probs=152.4
Q ss_pred CCCceeeEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-------
Q 007431 356 HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------- 423 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~D-----g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg------- 423 (604)
|...+..++|||||++|+.++.+ ..|++||+.+++.+...........+.|+++ ..|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD----~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN----DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT----SEEEEEECCCC------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC----CEEEEEEecCccccccc
Confidence 33478899999999999877654 3699999999987654221111134556664 2344444443
Q ss_pred -------eEEEEeCCCCce--EEEEc--CcCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCC--eEEEEeecCC
Q 007431 424 -------KIVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIP--VVIKYISEPH 485 (604)
Q Consensus 424 -------~I~iwD~~s~~~--~~~~~--~h~~~V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~~--~~~~~~~~~~ 485 (604)
.|++|++.++.. ...+. .+...+..+.|+|+|++|+..+.++ .|++||+.++ .....+.. +
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-D 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-S
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-C
Confidence 499999987652 23333 3334588999999999988777544 8999999876 31334433 3
Q ss_pred CCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCce-eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007431 486 MHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
...+... ++|+++.|+..+.+ +.|.+|++.+.. ... ..+..+ ...+..++++ ++.++++...+|..+||
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 3334444 35899988888764 459999987642 111 112222 2235567777 56678888888887777
Q ss_pred eCC-CCeeEEEEecC-CCcEEEEEEecCCCCEEEEEeC---CCcEEEeC
Q 007431 561 DWK-SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 604 (604)
Q Consensus 561 d~~-t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg~---DG~I~vWD 604 (604)
.+. +++....+..+ .+.+..+.++|++..++++.+. .++|.+||
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 554 46666666653 5678899999955445544443 36677775
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=6.9e-11 Score=125.07 Aligned_cols=254 Identities=11% Similarity=0.070 Sum_probs=180.6
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCC-------CCceeeEEE
Q 007431 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF 365 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~f 365 (604)
.+.+.++..-..+ .+.++|+ +++|+++. .++.|.++|. .+.+.+.++.-. ......+.|
T Consensus 109 ~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~-~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDP-VTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEEC-CCCcEEEEEECCCccccccCCCcceEEE
Confidence 4566666644455 8999999 66666654 4678999999 677777776421 234578999
Q ss_pred ccCCCEEEEEEC--CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE----
Q 007431 366 CNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---- 439 (604)
Q Consensus 366 spdg~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---- 439 (604)
+|||++|+++.. ++.|.+.|+.+++.+..+..+.. ..+.+.+. ..+++.+.||.+.+.++.+++.....
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~ 259 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEVF 259 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCCC
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeee
Confidence 999999999875 57899999999999999886543 33444332 56788888999999999766655332
Q ss_pred cCcCCce-eEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE--EeecC---------CCCcccEEEEcCCCCEEEEEEc-
Q 007431 440 DQHLGAV-NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP---------HMHSMPSISLHPNTNWLAAQSL- 506 (604)
Q Consensus 440 ~~h~~~V-~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~--~~~~~---------~~~~v~~l~~sp~g~~l~s~s~- 506 (604)
.....++ ..+.+.+++..++..+..+.|.+.|+....... .+... .......++++|+++.+++...
T Consensus 260 ~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~ 339 (426)
T 3c75_H 260 HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ 339 (426)
T ss_dssp SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence 1111121 235678888888888888999999986543221 11100 0112234789999888777653
Q ss_pred ---------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007431 507 ---------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 507 ---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs-~dG~I~iwd~~t~~~~~~l 571 (604)
++.|.++|+.+...+..+.. ......+.|+|||+ ++++.. .++.|.++|..+++.+.++
T Consensus 340 ~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 340 RDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999998776654432 22355799999999 888877 5899999999999999997
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=2.8e-10 Score=114.84 Aligned_cols=240 Identities=12% Similarity=0.163 Sum_probs=160.5
Q ss_pred cCCCCCeEEEEEcCCCCCEEEE-------EECCCcEEEEecCCCCeeeEEec----CCCCceeeEEEccC-CCEEEEEEC
Q 007431 310 SGHTKGVSAIRFFPKYGHLILS-------AGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCND-GTKFLTASY 377 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~s-------gs~Dg~I~IWd~~~~~~~~~~~~----~h~~~V~~l~fspd-g~~L~s~s~ 377 (604)
.+.-....+++|+++ +.++++ +..++.|.+|+. .+++...... ++...+.+++++++ |++++ ++.
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM 90 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeC-CCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EEC
Confidence 444556789999988 788877 577899999997 3454432221 25567899999998 65444 444
Q ss_pred CCcEEEEECCCCcEEEE-eeCC-----CcceEEEEccCCCCCcEEEEEEcC---------------CeEEEEeCCCCceE
Q 007431 378 DKNIKYWDTETGQVIRT-FSTG-----KIPYVVKLNPDDDKQNILLAGMSD---------------KKIVQWDMNTKEIT 436 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~-~~~~-----~~~~~~~~~~~~~~~~~lvsg~~d---------------g~I~iwD~~s~~~~ 436 (604)
.+.|.+||.. ++.... .... ..+..+.+.+++ +++++...+ +.|..||.. ++..
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 5579999998 766443 2211 224566666543 566665544 678888876 5544
Q ss_pred EEEcCcCCceeEEEEe----CCCCEEEEE-eCCCcEEEEECC-CCeE-----EEEeecCCC-CcccEEEEcCCCCEEEEE
Q 007431 437 QEYDQHLGAVNTITFV----DSNRRFVTS-SDDKSLRVWEFG-IPVV-----IKYISEPHM-HSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~s----p~~~~l~sg-s~Dg~I~iwdl~-~~~~-----~~~~~~~~~-~~v~~l~~sp~g~~l~s~ 504 (604)
... .+......++++ ++++.|+.+ ..++.|.+||+. .+.. ...+ ..+. ..+..++++++|+++++.
T Consensus 166 ~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEE
T ss_pred Eec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEE
Confidence 332 344567899999 998765544 567899999976 3332 1111 1222 557889999999988888
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCC
Q 007431 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKS 564 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~-sgs~dG~I~iwd~~t 564 (604)
..++.|.+|+..++..... +..+ ...+.+++|+|+|+.|+ +...++.|..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~~~~---~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMR---IRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEE---EECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEE---EeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8889999999874433222 2222 24577899999999555 555678999999764
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=2.5e-11 Score=125.41 Aligned_cols=262 Identities=11% Similarity=0.095 Sum_probs=173.7
Q ss_pred CCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCeeeEEe-------cCCCCceeeEEEccCCCEEEEEEC-----CC
Q 007431 314 KGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCNDGTKFLTASY-----DK 379 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs--~Dg~I~IWd~~~~~~~~~~~-------~~h~~~V~~l~fspdg~~L~s~s~-----Dg 379 (604)
..+..|+++|+ ++++++.. .++.++||.+. .++. ..+ ..|...+..|+++++|+++++-.. ++
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 67999999999 88888864 23447777774 4443 322 135568999999999876665433 57
Q ss_pred cEEEEECCCCcEEEEeeCCC-------cceEEEEccCCCCCcEEEEEE---cCCeEEEEeCCCCceEEEEcCcCCcee-E
Q 007431 380 NIKYWDTETGQVIRTFSTGK-------IPYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTKEITQEYDQHLGAVN-T 448 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~-------~~~~~~~~~~~~~~~~lvsg~---~dg~I~iwD~~s~~~~~~~~~h~~~V~-~ 448 (604)
.|.+||+.+++.+..+.... .+..+.+.+. .+.++++.. .++.|.+||+.+++....+..|..... .
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~--~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI--HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT--TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecC--CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 89999999999887775431 2345666553 235556655 688999999999987777655432211 1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEcCCce--eecc--
Q 007431 449 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERF--QLNK-- 523 (604)
Q Consensus 449 i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg-~I~iwd~~~~~--~~~~-- 523 (604)
..+..++..|.+.+.++.++.|. ..+..|+++|+++.|+++...+ .|..++..... .+..
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred cceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 34555777777778888876553 1356799999999999888776 55555432100 0000
Q ss_pred -cccc--cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCC
Q 007431 524 -KKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 524 -~~~~--~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
...+ .++ .+....++++++|.++++...++.|.+||..+++....... +...+.+++|.+ ++.++++.+..+
T Consensus 237 ~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~ 312 (343)
T 2qe8_A 237 LGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLH 312 (343)
T ss_dssp HHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCGG
T ss_pred hhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCccc
Confidence 0000 011 12344689999999999999999999999866765433332 234689999998 566777766443
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=4.9e-10 Score=118.70 Aligned_cols=240 Identities=9% Similarity=0.024 Sum_probs=164.6
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCce
Q 007431 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEI 435 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~ 435 (604)
.....|+|+++++++++...++.|++||..++...........+. +++.+++ ..|+++..++ .|++|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence 357899999999877777778999999999888777666655555 7777654 4667776655 899999877655
Q ss_pred EEEE----cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ecCCCCcc--cEEEEcCC-CCEEEEEE
Q 007431 436 TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---SEPHMHSM--PSISLHPN-TNWLAAQS 505 (604)
Q Consensus 436 ~~~~----~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~~v--~~l~~sp~-g~~l~s~s 505 (604)
...+ ......+.+++++|++..|+++..++.|+.||.......... ........ ..++|+|+ +.++++-.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 225567889999996556666777889999999876543321 11122222 39999996 55555555
Q ss_pred cCCeEEEEEcCCceeeccccc-ccCcc-------cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecC--
Q 007431 506 LDNQILIYSTRERFQLNKKKR-FAGHI-------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH-- 574 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~-~~~~~-------~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h-- 574 (604)
.++.|+.|+.........-.. ..+.. .-.....++++++|+++++-. .+++|+.|++.++.. .++.++
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 678899998765321110000 00000 012367899999999888877 899999999888874 444443
Q ss_pred -------------CCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 575 -------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 575 -------------~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
-....++++.+ ++.++++-..++.|+.+
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEE
Confidence 13578999999 57777777778888765
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=1.3e-10 Score=132.93 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=155.3
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc-----
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 380 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~D-----g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~----- 380 (604)
+|...+..++|||+ |++|+.++.+ ..|++||+ .+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl-~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGV-ADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEET-TTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 35557899999999 7877766543 35999999 56665443 112223468999999 99998887654
Q ss_pred ---------EEEEECCCCcE--EEEeeCCC---cceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCC--ceEEEE
Q 007431 381 ---------IKYWDTETGQV--IRTFSTGK---IPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTK--EITQEY 439 (604)
Q Consensus 381 ---------I~vWD~~t~~~--i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~--~~~~~~ 439 (604)
|.+|++.++.. ...+.... ......+++++ ..|+..+.+ ..|++||+.++ +....+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG---RWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC---CEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 89999988762 23333222 23445555543 445555433 48999999877 413444
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCC----CcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007431 440 DQHLGAVNTITFVDSNRRFVTSSDD----KSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 514 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~~~~l~sgs~D----g~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd 514 (604)
..+...+.... +|+++.|+..+.+ +.|.+||+..+ .....+...+...+..+++. ++.++++...|+..+||.
T Consensus 313 ~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 313 IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 44555555543 4788888877764 45999999875 24444444445556677777 566778888898877775
Q ss_pred cC-CceeecccccccCcccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCe
Q 007431 515 TR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCK 566 (604)
Q Consensus 515 ~~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg----s~dG~I~iwd~~t~~ 566 (604)
+. ++..... +..+ ..+.+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 391 ~~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGA---VSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEE---CBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceee---ccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 54 2222221 2111 13557778999998866532 235789999998876
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=2e-09 Score=107.42 Aligned_cols=236 Identities=11% Similarity=-0.010 Sum_probs=162.6
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC---CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC
Q 007431 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 431 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 431 (604)
.....+.+|++.++|+++++...++.|.+||.. ++... +... ..+..+.+.++ +.++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC
Confidence 345678999999999988877778999999988 65543 2221 33445555432 3566666667899999988
Q ss_pred CCceEEE-EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 432 TKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 432 s~~~~~~-~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
++.... +......+.++++.++++++++...++.|..||.. +.............+.+++++++++++++...++.|
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 654322 22244678999999999888887778899999987 544433222244568899999999966665557889
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE-EecCCCcEEEEEEecCCCC
Q 007431 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQS 589 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~ 589 (604)
..|+.. +.... .. .... ...+..++++++|++.++....+.|.+|+. +++.... +..+...+.++++.+ ++.
T Consensus 170 ~~~~~~-g~~~~-~~-~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~ 242 (300)
T 2qc5_A 170 GRITNT-GKLEE-YP-LPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSE 242 (300)
T ss_dssp EEECTT-CCEEE-EE-CSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTC
T ss_pred EEECCC-CcEEE-ee-CCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCC
Confidence 999883 32221 11 1111 245678999999988887777888999998 5554432 233456689999999 566
Q ss_pred EEEEEeCCCcEEEeC
Q 007431 590 KVATCGWDGLIKYWD 604 (604)
Q Consensus 590 ~l~tgg~DG~I~vWD 604 (604)
++++...++.|.+||
T Consensus 243 l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 243 IWFTEWGANQIGRIT 257 (300)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEeccCCCeEEEEC
Confidence 666665668888775
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=5.8e-10 Score=112.96 Aligned_cols=239 Identities=11% Similarity=0.142 Sum_probs=154.6
Q ss_pred eeEEecCCCCceeeEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007431 349 CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 349 ~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
.+..+..+........|+++|+ ++++...++.|..|+. ++...........+..+.+.+++ +++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEE
Confidence 3444445556678899999998 5566667899999998 45533222334445566665533 55555555689999
Q ss_pred EeCCCCceEEEEcCc----CCceeEEEEeCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEeecCCC
Q 007431 428 WDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVT----SSD-------------DKSLRVWEFGIPVVIKYISEPHM 486 (604)
Q Consensus 428 wD~~s~~~~~~~~~h----~~~V~~i~~sp~~~~l~s----gs~-------------Dg~I~iwdl~~~~~~~~~~~~~~ 486 (604)
|+.. ++........ ...++.+.+.++|+++++ |.. .+.|..||..++...... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9986 5543322211 234678999999998886 332 245777776555433322 23
Q ss_pred CcccEEEEcCCCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007431 487 HSMPSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
.....++|+|+++.|+++... +.|.+|++.... +.....+... ..+....++++++|++. +++.+ .|.+|
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~ 263 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVF 263 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEE
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEE
Confidence 346789999999988887765 789999987543 2111111110 12234458899999954 44444 49999
Q ss_pred eCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007431 561 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 561 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
+. .++.+..+..+. .+.+++|.+ ++..|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 97 678888887666 478999997 6667777776766554
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=4.1e-09 Score=107.88 Aligned_cols=226 Identities=11% Similarity=0.008 Sum_probs=148.0
Q ss_pred ceeeEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE
Q 007431 359 AVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 437 (604)
Q Consensus 359 ~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~ 437 (604)
-..+..|++++. ++++...++.|.+||..+++.. .+.....+..+.+.+++ .+++ ++. ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v-~~~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLI-ASD-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEE-EET-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEE-EEC-CCEEEEECCCCcEEE
Confidence 346778999754 5556667889999999887653 34444556666666643 3444 444 459999998887644
Q ss_pred EEcC----cCCceeEEEEeCCCCEEEEEeC------CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-c
Q 007431 438 EYDQ----HLGAVNTITFVDSNRRFVTSSD------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-L 506 (604)
Q Consensus 438 ~~~~----h~~~V~~i~~sp~~~~l~sgs~------Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~ 506 (604)
.... ....++++.++|+|+++++... .+.|..++ .+.... +.. .......++|+|+++.|+.+. .
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~-~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA-DISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE-EESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC-CCcccCCeEEcCCCCEEEEEECC
Confidence 3321 1235889999999987776542 24555555 444332 221 223467899999998776654 4
Q ss_pred CCeEEEEEcC--Cc-eeec--ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEE
Q 007431 507 DNQILIYSTR--ER-FQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 581 (604)
Q Consensus 507 Dg~I~iwd~~--~~-~~~~--~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v 581 (604)
++.|.+|++. ++ .... ....+... ......++++++|.+.++...++.|.+||. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 6889999985 43 2111 11111111 234567999999988877767789999997 678888888777789999
Q ss_pred EEe-cCCCCEEEEEeCC
Q 007431 582 EWH-PLEQSKVATCGWD 597 (604)
Q Consensus 582 ~~s-p~~~~~l~tgg~D 597 (604)
+|. ++...++++...+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 7434444555444
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=3.1e-09 Score=110.63 Aligned_cols=256 Identities=10% Similarity=0.062 Sum_probs=173.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcce---
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--- 402 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~--- 402 (604)
+..|+.++.++.|..+|. .+++.+..+............. +..++.++.++.|..+|..+|+.+..+.......
T Consensus 103 ~~~v~v~~~~g~l~a~d~-~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNT-SDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 567888899999999999 6787777665443322223332 4578888899999999999999998876643321
Q ss_pred ---EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc----------e-eEEEEeCCCCEEEEEeCCCcEE
Q 007431 403 ---VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----------V-NTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 403 ---~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~----------V-~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
..... ...++++..++.|..+|..+++.+......... + ....+ .+..++.++.++.|.
T Consensus 180 ~~~~~~~~-----~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 180 GESAPTTA-----FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLT 252 (376)
T ss_dssp CCCCCEEE-----TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEE
T ss_pred CCCCcEEE-----CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEE
Confidence 11111 146888888999999999999988776532110 1 11111 245778888899999
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007431 469 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 548 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L 548 (604)
.+|..+++.+..... .....+.. ++..|++++.++.|..+|..++................. .. .+..|
T Consensus 253 ~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~----~~--~~~~l 321 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP----VL--YNGNL 321 (376)
T ss_dssp EEETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC----EE--ETTEE
T ss_pred EEECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC----EE--ECCEE
Confidence 999999887765532 22333333 467888889999999999988876544332222211111 12 25688
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 549 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++.+|.|+++|..+++.+..+......+.+..... +..|+.++.+|.|..||
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 8999999999999999999988876444333221222 34788899999999885
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=7.9e-11 Score=122.95 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=129.8
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC----------eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~----------~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
.++.|++++. ..+|++|+.++ +++|++..-. +..... .+.. |+.|+| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 5899999999 88999999875 5669863111 121222 4666 999999 88999998 88999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007431 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
|+.+............. +..+.+... -+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~~~-v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKP-VFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECSSC-EEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceeecc-eeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 99876654443332222 223334332 28888999999999999887653 45689999999999 7889999
Q ss_pred CcEEEEECCCCeE--EEEeec--------CCCCcccEEEEcCCCCEEEEEE
Q 007431 465 KSLRVWEFGIPVV--IKYISE--------PHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 465 g~I~iwdl~~~~~--~~~~~~--------~~~~~v~~l~~sp~g~~l~s~s 505 (604)
|+|++|+...... ...+.. ++...|.+++|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999887775 445521 3678899999999999888754
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=5.1e-10 Score=126.33 Aligned_cols=273 Identities=14% Similarity=0.114 Sum_probs=184.7
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc-----------eeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~-----------V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|++++.++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 567777888899999999 688888887644221 122333 466888899999999999999999998
Q ss_pred eeCC-Ccc--eEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCCc--------------------
Q 007431 395 FSTG-KIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 445 (604)
Q Consensus 395 ~~~~-~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~~-------------------- 445 (604)
+... ... ..+...|.-.+ ..+++++. ++.|+.||..+|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred ecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 8765 210 00000000011 34555553 699999999999998887543211
Q ss_pred ------------eeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEeecCCC--------
Q 007431 446 ------------VNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEPHM-------- 486 (604)
Q Consensus 446 ------------V~~i~~sp~~~~l~sgs~Dg-------------------~I~iwdl~~~~~~~~~~~~~~-------- 486 (604)
...+++++++.+++.++.++ +|..+|..+++..-.+...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 13578889888988887664 599999999988877654221
Q ss_pred CcccEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeccccccc----------Cccc--------------------c
Q 007431 487 HSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA----------GHIV--------------------A 533 (604)
Q Consensus 487 ~~v~~l~~sp~g---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~--------------------~ 533 (604)
.....+....+| ..|++++.+|.|+++|..++..+....... +... .
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 112223333467 688999999999999999887654332110 0000 0
Q ss_pred cceEEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEeCCCCeeEEE
Q 007431 534 GYACQVNFSPDGRFVMSGDG-------------------------------------------EGKCWFWDWKSCKVFRT 570 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~-------------------------------------------dG~I~iwd~~t~~~~~~ 570 (604)
..-..++++|++.++++... .|.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 00014688999888887543 27899999999999988
Q ss_pred EecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 571 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 571 l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+... .++.+..+.. .+.+++.++.||.|++||
T Consensus 473 ~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 473 VEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEE
Confidence 8743 3344455555 456888899999999987
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=2.4e-10 Score=118.88 Aligned_cols=260 Identities=9% Similarity=-0.014 Sum_probs=174.3
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCC-------CCceeeEE
Q 007431 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDIS 364 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~ 364 (604)
..+.+.++..-..+ .+.++|+ +++|+++. .++.|.+||+ .+++.+.++..+ ......++
T Consensus 55 t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCccccccCCCcceEE
Confidence 34667777655556 7999999 67676665 3789999999 688888887543 13467899
Q ss_pred EccCCCEEEEEEC--CCcEEE--EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-----Cce
Q 007431 365 FCNDGTKFLTASY--DKNIKY--WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI 435 (604)
Q Consensus 365 fspdg~~L~s~s~--Dg~I~v--WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-----~~~ 435 (604)
|+|||++|+++.. +..|.+ +|+.+ +..+..+.. ..+.+.+ ...+++.+.|+.+.+.|+.+ ++.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g--~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEE--TTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCC--CeEEEEEcCCCCEEEEECccccccCCeE
Confidence 9999999999875 357888 99887 455544332 1123332 25667777889999999886 432
Q ss_pred EEE----EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--eEEEEeecC---------CCCcccEEEEcCCCCE
Q 007431 436 TQE----YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEP---------HMHSMPSISLHPNTNW 500 (604)
Q Consensus 436 ~~~----~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~---------~~~~v~~l~~sp~g~~ 500 (604)
... +.-...+. . .+++..++..+. +.|.+.|+... ..+..+... .......++++|+++.
T Consensus 203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 210 11112232 3 666677666666 99999998653 233322111 0111233789999998
Q ss_pred EEEEEc-C--------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE-EEEEc-CCCcEEEEeCCCCeeEE
Q 007431 501 LAAQSL-D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD-GEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 501 l~s~s~-D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-L~sgs-~dG~I~iwd~~t~~~~~ 569 (604)
++++.. . +.+.++|+.+...+..+.. ......++|+|||++ +++.. .++.|.++|+.+++.+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 887654 2 3567999988766544432 224567999999984 55555 58999999999999999
Q ss_pred EEecCCCcEEEEEEec
Q 007431 570 TLKCHEGVCIGCEWHP 585 (604)
Q Consensus 570 ~l~~h~~~V~~v~~sp 585 (604)
++.....+ ..+++.+
T Consensus 352 ~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 352 SVELDKGP-ESLSVQN 366 (368)
T ss_dssp ECCCCSCC-CEEECCC
T ss_pred EEECCCCC-CEEEeec
Confidence 99866554 5666654
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=6.1e-09 Score=104.94 Aligned_cols=230 Identities=9% Similarity=0.064 Sum_probs=150.2
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC
Q 007431 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t 388 (604)
+..+..-.-+..|+|+.+.++++...++.|..||. .++.. ..+ .+...+.+++++++|+++++ . ++.|.+||..+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS-FTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEET-TTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEEC-CCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34445556788999975778888888999999998 34433 333 34567999999999995554 4 57899999998
Q ss_pred CcEEEEeeCC-----CcceEEEEccCCCCCcEEEEEEc-----------CCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007431 389 GQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 389 ~~~i~~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
++........ ..+..+.+.+++ .++++... .+.|+.++.. ++... +..+....+.++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAG---RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTS---CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEEC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCC---CEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEc
Confidence 8754433221 123345555432 45554432 2355555553 33332 33345567899999
Q ss_pred CCCCEE-EEEeCCCcEEEEECC--CCeEE--EEeec--CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 453 DSNRRF-VTSSDDKSLRVWEFG--IPVVI--KYISE--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 453 p~~~~l-~sgs~Dg~I~iwdl~--~~~~~--~~~~~--~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
|+++.| ++.+.++.|.+|++. ++... ..+.. ........++++++|++.++....+.|.+|+..++..+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999866 455667899999973 44321 11211 123457889999999888887778899999987665443332
Q ss_pred cccCcccccceEEEEEc-CCCCEEEEEcC
Q 007431 526 RFAGHIVAGYACQVNFS-PDGRFVMSGDG 553 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~s-pdg~~L~sgs~ 553 (604)
.+ ...+++++|+ |+++.|++.+.
T Consensus 238 ---~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 ---LP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---CS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred ---CC--CCCceEEEEeCCCCCEEEEEcC
Confidence 11 2457789998 88887766554
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=5.2e-09 Score=108.94 Aligned_cols=259 Identities=10% Similarity=0.061 Sum_probs=169.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC---------CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS---------KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~---------~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~ 396 (604)
+..|++++.++.|..+|. .+++.+..+.... ..+.+. ...++..++.++.++.|..+|..+|+.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567888888999999998 6777776655421 222221 22245678888999999999999999998876
Q ss_pred CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEEEE
Q 007431 397 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V-----~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
............ ...+++++.++.|+.+|..+++.+..+....... ...... +..+++++.++.|..+|
T Consensus 131 ~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 131 VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 653322111111 1468888999999999999999888775432211 222232 45778888899999999
Q ss_pred CCCCeEEEEeecCCCCc------ccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 472 FGIPVVIKYISEPHMHS------MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~------v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
..+++............ +..+...| .+..+++++.++.|..+|..++..+..... . ....+..
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~------~~~~~~~-- 275 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-G------SVNDFIV-- 275 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-C------CEEEEEE--
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-C------CCCCceE--
Confidence 99888776654321100 00000111 256778888899999999988765533221 1 1122333
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++..|+.++.+|.|..+|..+++.+...... ...+...... +..|+.++.+|.|.++|
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEE
Confidence 4668888888999999999999998877622 2222233332 24688888888888775
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=3.2e-09 Score=107.40 Aligned_cols=238 Identities=11% Similarity=0.123 Sum_probs=156.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCC-EEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007431 304 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
..+..+..+.....+..|+|+ ++ +++++..++.|..|+. .+. ...+..+...+..++++++|+++++...++.|.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~--~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE--DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET--TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC--CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344555566677889999999 55 7788888899999987 333 345555677899999999998666555568899
Q ss_pred EEECCCCcEEEEeeC-----CCcceEEEEccCCCCCcEEEE----EEc-------------CCeEEEEeCCCCceEEEEc
Q 007431 383 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GMS-------------DKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 383 vWD~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~~-------------dg~I~iwD~~s~~~~~~~~ 440 (604)
+|+.. ++....... ...+..+.+.+++ .++++ |.. .+.|+.||..+++.....
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG---~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG---AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTS---CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCC---CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 99986 554322211 1123445665543 45554 332 367888998777655443
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCC------CcEEEEECCCCeE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007431 441 QHLGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 512 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~D------g~I~iwdl~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~i 512 (604)
.....+.++|+|+++.|+.+... +.|.+|++..... ...+..........++++++|++.++ +. +.|.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~-~gv~~ 262 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SG-TGVCV 262 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CS-SEEEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cC-CcEEE
Confidence 44567899999999987777655 6899999875541 11222223345678999999995444 44 45999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007431 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
|+... ..+..+. .. ..+.+++|+++++.|+.++.++ |+.++
T Consensus 263 ~~~~g-~~~~~~~---~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 263 FDSDG-QLLGHIP---TP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECTTS-CEEEEEE---CS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCC-CEEEEEE---CC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99853 3332222 11 1356789999999888887764 44333
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=6e-10 Score=125.98 Aligned_cols=273 Identities=14% Similarity=0.095 Sum_probs=181.7
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc----------e-eeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~----------V-~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|++++.++.|..+|. .+++.+..+..+... + ..+.. .+..|++++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 567788888999999999 688888887643321 0 12222 456888899999999999999999988
Q ss_pred eeCC-Ccc--eEEEEccCCCCCcEEEEEE------cCCeEEEEeCCCCceEEEEcCcC----------------------
Q 007431 395 FSTG-KIP--YVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHL---------------------- 443 (604)
Q Consensus 395 ~~~~-~~~--~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~s~~~~~~~~~h~---------------------- 443 (604)
+... ... ..+...|.-.+ ..+++++ .++.|+.||..+|+++..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 8764 211 00000110001 2455554 36899999999999988775211
Q ss_pred ---------CceeEEEEeCCCCEEEEEeCCCc-------------------EEEEECCCCeEEEEeecC-CC-------C
Q 007431 444 ---------GAVNTITFVDSNRRFVTSSDDKS-------------------LRVWEFGIPVVIKYISEP-HM-------H 487 (604)
Q Consensus 444 ---------~~V~~i~~sp~~~~l~sgs~Dg~-------------------I~iwdl~~~~~~~~~~~~-~~-------~ 487 (604)
.....+++.|+..+++.++.++. |..+|..+++.+-.+... +. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 01125788898889999887763 999999999888766542 21 1
Q ss_pred cccEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeccccccc-------------------------Cc---------
Q 007431 488 SMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-------------------------GH--------- 530 (604)
Q Consensus 488 ~v~~l~~sp~g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-------------------------~~--------- 530 (604)
.+....+..+|+ .++.++.+|.++++|..++..+....... ..
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 111122223554 78889999999999998887653211100 00
Q ss_pred ccccceEEEEEcCCCCEEEEEcC---------------------------------------------CCcEEEEeCCCC
Q 007431 531 IVAGYACQVNFSPDGRFVMSGDG---------------------------------------------EGKCWFWDWKSC 565 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~---------------------------------------------dG~I~iwd~~t~ 565 (604)
.....-..++|+|+..+|++... +|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 00000112688998888887532 378999999999
Q ss_pred eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 566 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+..+..+.. +....+.. .+.+|++++.||.|+.||
T Consensus 466 ~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 466 QAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred CeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEE
Confidence 99998876543 33334555 456899999999999997
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=1.8e-10 Score=120.32 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=130.8
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCc-----------EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007431 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
+++.+++++...+|++|+.+ .+++|++.... ......... +..+.| ++.+|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-----d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-----HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-----ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-----CCCEEEEE-cCCcEEE
Confidence 68999999999999999987 56669875332 112333444 666666 23677777 8899999
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007431 428 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 507 (604)
Q Consensus 428 wD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D 507 (604)
||+++.........|...+.++.+.+. .+++++.||.|.+||+....... +...|+|++|+|+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcC
Confidence 999987766667778888988887754 38889999999999998777643 23579999999999 7889999
Q ss_pred CeEEEEEcCCcee--eccc---ccccCc-ccccceEEEEEcCCCCEEEEE
Q 007431 508 NQILIYSTRERFQ--LNKK---KRFAGH-IVAGYACQVNFSPDGRFVMSG 551 (604)
Q Consensus 508 g~I~iwd~~~~~~--~~~~---~~~~~~-~~~~~v~~l~~spdg~~L~sg 551 (604)
|.|++|+...... ...+ ..+..+ .....|.++.|.+++.++++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999998876542 1111 111210 014678899999999999873
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=3.7e-09 Score=119.47 Aligned_cols=259 Identities=14% Similarity=0.162 Sum_probs=170.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCC--CCceeeEEEcc---CCCEEEEEE------CCCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCN---DGTKFLTAS------YDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h--~~~V~~l~fsp---dg~~L~s~s------~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|++++.|+.|..+|. .+++.+..+... ......+..+| ++. ++.++ .+|.|..||..+|+.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDA-KTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEEC-CCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 567888999999999999 688887776542 11111222222 444 44443 368999999999999988
Q ss_pred eeCCC-cc-------------------------------eEEEEccCCCCCcEEEEEEcCCe------------------
Q 007431 395 FSTGK-IP-------------------------------YVVKLNPDDDKQNILLAGMSDKK------------------ 424 (604)
Q Consensus 395 ~~~~~-~~-------------------------------~~~~~~~~~~~~~~lvsg~~dg~------------------ 424 (604)
+.... .+ ....+.+. ..+++++..++.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE---LNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 76311 00 12334332 357888877763
Q ss_pred -EEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCeEEEEeecCCC-----
Q 007431 425 -IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM----- 486 (604)
Q Consensus 425 -I~iwD~~s~~~~~~~~~--h~-------~~V~~i~~sp~~~---~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----- 486 (604)
|..+|..+|+.+..+.. |. .++.......+++ .++.++.+|.|+++|..+++.+........
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999999999988764 21 1222223333554 788999999999999999988744321110
Q ss_pred ---------------------------------CcccEEEEcCCCCEEEEEEc---------------------------
Q 007431 487 ---------------------------------HSMPSISLHPNTNWLAAQSL--------------------------- 506 (604)
Q Consensus 487 ---------------------------------~~v~~l~~sp~g~~l~s~s~--------------------------- 506 (604)
..-..++++|+..+|++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 01123788898888877643
Q ss_pred ------------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007431 507 ------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 507 ------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
+|.|..||+.+++.+...... .. ...-.++..+.+|++|+.||.|+.||.++|+.+
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~-----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TI-----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SS-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CC-----ccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 367899999888766443321 11 111245557889999999999999999999999
Q ss_pred EEEecCCCcE-EEEEEecCCCCEEEEEe
Q 007431 569 RTLKCHEGVC-IGCEWHPLEQSKVATCG 595 (604)
Q Consensus 569 ~~l~~h~~~V-~~v~~sp~~~~~l~tgg 595 (604)
..++...+.+ .-+.|..++..++++.+
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9998654322 33566664555655543
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=1.7e-09 Score=112.40 Aligned_cols=248 Identities=9% Similarity=-0.102 Sum_probs=166.5
Q ss_pred cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE----------CCCcEEEEECCCCcEEEEeeCC--------
Q 007431 337 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG-------- 398 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s----------~Dg~I~vWD~~t~~~i~~~~~~-------- 398 (604)
+|.+.|. .+.+.+.++.....+ .+.++||+++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7889999 688888888755556 799999999999886 3688999999999999998754
Q ss_pred CcceEEEEccCCCCCcEEEEEEc--CCeEEE--EeCCCCceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECC
Q 007431 399 KIPYVVKLNPDDDKQNILLAGMS--DKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~lvsg~~--dg~I~i--wD~~s~~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~ 473 (604)
..+..+.+++++. +++++.. ...|.+ +|+.+ +..+... +. +.+.|++ ..+++.+.|+.+.+.|+.
T Consensus 124 ~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 124 PRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 4577888888653 4555543 467888 99877 4444321 11 1223433 456677788999889987
Q ss_pred C-----CeEEEE---eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce--eecccccc------cCcccccceE
Q 007431 474 I-----PVVIKY---ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--QLNKKKRF------AGHIVAGYAC 537 (604)
Q Consensus 474 ~-----~~~~~~---~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~------~~~~~~~~v~ 537 (604)
. ++.... .......+. . .+++..++..+. +.|.+.|+.... ........ .+. ......
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~-~p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF-RSAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE-EECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc-ccCcce
Confidence 6 221110 000011222 3 666666666666 999999986432 11111110 000 011111
Q ss_pred EEEEcCCCCEEEEEcC---------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe-CCCcEEEeC
Q 007431 538 QVNFSPDGRFVMSGDG---------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 604 (604)
Q Consensus 538 ~l~~spdg~~L~sgs~---------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG~I~vWD 604 (604)
.++++|+++.++++.. .+.+.++|+.+.+.+..+.... ...+++|+|++..+++++. .++.|.|+|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2689999998887643 2356799999999999887554 5789999996555788888 599999987
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=1.3e-08 Score=114.79 Aligned_cols=257 Identities=12% Similarity=0.101 Sum_probs=171.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCC-C----CceeeEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-S----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-~----~~V~~l~fspdg~~L~s~s~------Dg~I~vWD~~t~~~i~~ 394 (604)
+..|+.++.|+.|..+|. .+++.+..+..+ . ..+.+--.. .+..+++++. ++.|..+|..+|+.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDA-ATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 568888899999999999 688888877654 2 122221111 2345555543 69999999999999988
Q ss_pred eeCCCcc---------------------------------eEEEEccCCCCCcEEEEEEcCC------------------
Q 007431 395 FSTGKIP---------------------------------YVVKLNPDDDKQNILLAGMSDK------------------ 423 (604)
Q Consensus 395 ~~~~~~~---------------------------------~~~~~~~~~~~~~~lvsg~~dg------------------ 423 (604)
+...... ..+.+.+. ..+++++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCCCCCccCCCCeee
Confidence 8653221 12333333 25677776654
Q ss_pred -eEEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCeEEEEeecCCCC---
Q 007431 424 -KIVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--- 487 (604)
Q Consensus 424 -~I~iwD~~s~~~~~~~~~--h~-------~~V~~i~~sp~~---~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~--- 487 (604)
.|..+|..+++.+..++. |. .....+....+| ..++.++.+|.|+++|..+++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 599999999999888764 21 122223333466 67899999999999999999887665422100
Q ss_pred -------c------------------------ccEEEEcCCCCEEEEEEcC-----------------------------
Q 007431 488 -------S------------------------MPSISLHPNTNWLAAQSLD----------------------------- 507 (604)
Q Consensus 488 -------~------------------------v~~l~~sp~g~~l~s~s~D----------------------------- 507 (604)
+ -..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0 1257889998888876542
Q ss_pred --------------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007431 508 --------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 508 --------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
+.|..||+.+++.+..... . ..+....++..+.+++.++.+|.|++||..+++.+..+..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~-----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V-----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCC-C-----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 6799999988876654432 1 1122234556788999999999999999999999999985
Q ss_pred CCC-cEEEEEEecCCCCEEEE
Q 007431 574 HEG-VCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 574 h~~-~V~~v~~sp~~~~~l~t 593 (604)
..+ ...-+.|..++..++++
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEE
Confidence 542 12234555634444444
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=3e-09 Score=120.50 Aligned_cols=242 Identities=15% Similarity=0.177 Sum_probs=152.6
Q ss_pred CCCCCeEEEEEcCCCCCEEEE-EE----CCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc-----
Q 007431 311 GHTKGVSAIRFFPKYGHLILS-AG----MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 380 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~s-gs----~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~----- 380 (604)
+|...|..++|||+ |++||- .+ ....|++||+ .+++.+... .+......++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDV-ESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEET-TTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEEC-CCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence 46667999999999 777663 32 2357999999 566654431 111113678999 9999999988743
Q ss_pred --------EEEEECCCCcE--EEEeeCCC--c--ceEEEEccCCCCCcEEEEEEc---CCeEEEEeCCCCc-eEEEEcCc
Q 007431 381 --------IKYWDTETGQV--IRTFSTGK--I--PYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNTKE-ITQEYDQH 442 (604)
Q Consensus 381 --------I~vWD~~t~~~--i~~~~~~~--~--~~~~~~~~~~~~~~~lvsg~~---dg~I~iwD~~s~~-~~~~~~~h 442 (604)
|++|++.++.. ...+.... . ...+.++++ ...++++... .+.|+++|+.++. ....+..+
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED--DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT--SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC--CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 99999987653 33333322 2 234455554 3345555443 3589999998763 34455556
Q ss_pred CCceeEEEEeCCCCEEEEEe-CC---CcEEEEECCCCeE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEEE
Q 007431 443 LGAVNTITFVDSNRRFVTSS-DD---KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIY 513 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs-~D---g~I~iwdl~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg---~I~iw 513 (604)
....... +++++..|+..+ .+ +.|.++|+..+.. ...+. ++...+. .|++++++|+....++ .|++|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 6665555 555666555444 33 5799999987643 22333 3444443 8899999888776654 68888
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC----CcEEEEeCCCCee
Q 007431 514 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSCKV 567 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d----G~I~iwd~~t~~~ 567 (604)
++..+... .+ .+.. .+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 356 d~~g~~~~-~l-~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGKRVR-EV-ALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSCEEE-EE-CCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCCeeE-Ee-ecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 88754321 11 1111 2445667788888877655444 8899999987754
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=7.1e-08 Score=98.61 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=145.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
.-..+.+|+|+++.++++...++.|.+|+. .+++. ..+. +...|.+++|+++|++++++ . ..|.+||..+++...
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHL-ASGRK-TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEET-TTTEE-EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEEC-CCCcE-EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 345778999986777788878899999998 44443 3332 35679999999999877654 4 459999998887654
Q ss_pred EeeCC-----CcceEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-
Q 007431 394 TFSTG-----KIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS- 461 (604)
Q Consensus 394 ~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg- 461 (604)
..... ..+..+.+.+++ .++++... .+.|+.++ +++... +..+....+.++|+|+++.++.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSG---ALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTS---CEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCC---CEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence 33221 123345555433 45544432 35677777 454433 33344567899999999876544
Q ss_pred eCCCcEEEEECC--CC-e-----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007431 462 SDDKSLRVWEFG--IP-V-----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 462 s~Dg~I~iwdl~--~~-~-----~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
+.++.|.+|++. ++ . ....+ .........++++++|.++++...++.|.+|+.. +..+.. +..+ .
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~---i~~~--~ 270 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR---YEVP--G 270 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE---EECS--C
T ss_pred CCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE---EECC--C
Confidence 557899999985 44 2 12222 1233456789999999877777777899999984 333322 2222 2
Q ss_pred cceEEEEEc-CCCCEEEEEcCC
Q 007431 534 GYACQVNFS-PDGRFVMSGDGE 554 (604)
Q Consensus 534 ~~v~~l~~s-pdg~~L~sgs~d 554 (604)
..+.+++|+ ++++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 357789998 888877655443
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.10 E-value=2.7e-09 Score=120.87 Aligned_cols=238 Identities=10% Similarity=0.048 Sum_probs=147.2
Q ss_pred CCCCceeeEEEccCCCEEEEEE-----CCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC-------
Q 007431 355 GHSKAVRDISFCNDGTKFLTAS-----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD------- 422 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s-----~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d------- 422 (604)
+|...+..++|||||++|+-+. ....|++||+.+++.+...........+.|+ ++ ..|+.+..+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg---~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN---EGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT---TEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC---CEEEEEEecCcccccc
Confidence 3556788999999999888433 2357999999999876542111112334566 44 345555555
Q ss_pred ------CeEEEEeCCCCce--EEEEc--C-cCCceeEEEEeCCCCEEEEEeC----CCcEEEEECCCCe-EEEEeecCCC
Q 007431 423 ------KKIVQWDMNTKEI--TQEYD--Q-HLGAVNTITFVDSNRRFVTSSD----DKSLRVWEFGIPV-VIKYISEPHM 486 (604)
Q Consensus 423 ------g~I~iwD~~s~~~--~~~~~--~-h~~~V~~i~~sp~~~~l~sgs~----Dg~I~iwdl~~~~-~~~~~~~~~~ 486 (604)
..|++|++.++.. ...+. . |...+..+.|+|++++|+..+. .+.|+++|+..+. ....+.. +.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~ 280 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DL 280 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CC
Confidence 3499999987642 33333 3 4455788999999998765442 3589999997763 2333332 33
Q ss_pred CcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-C--cEEE
Q 007431 487 HSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-G--KCWF 559 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-G--~I~i 559 (604)
...... +++++..|+..+.. +.|.++++.+.... ....+..+. ..+. .|++++++|+....+ | .|++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 334443 66777766655543 57889998765321 112233332 2232 889999988766544 3 6899
Q ss_pred EeCCCCeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCC---CcEEEeC
Q 007431 560 WDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWD---GLIKYWD 604 (604)
Q Consensus 560 wd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~D---G~I~vWD 604 (604)
|++..+ ....+.. +.+.+..+.+++++..++++.+.. +.|..||
T Consensus 355 ~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 355 FDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 998754 4445543 445677888888555555554432 6677765
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=9.2e-11 Score=122.58 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=113.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc-e
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-V 446 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~-V 446 (604)
++..+++++.||.|..||..+|+.+..+.. .......+.. ++.++++++.|+.|+.||..+++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc---CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999998876 3322222222 2346777789999999999999877666543211 1
Q ss_pred e-EEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 447 N-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 447 ~-~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
. +..+. .+..+++++.++.|+.||..+++.+..+.... ...++|++..|++++.++.|+.||..++..+....
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1 11111 34567788889999999999988776654321 23456688899999999999999998876543322
Q ss_pred cccCcccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEE
Q 007431 526 RFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 580 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg---~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~ 580 (604)
. .. .....++.+. ..+++++.+|.|+.||..+|+.+..+.. ..++..
T Consensus 158 ~-~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 158 Y-FD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA 207 (369)
T ss_dssp E-EE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred c-cc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence 1 10 0112233332 4677788899999999999999988874 344443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=7.7e-08 Score=100.95 Aligned_cols=226 Identities=14% Similarity=0.150 Sum_probs=148.5
Q ss_pred CCCCCEEEEEECCCcEEEEecCCC---CeeeEEec------C-CCCceeeEEEccCCCEEEEEECC------CcEEEEEC
Q 007431 323 PKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYM------G-HSKAVRDISFCNDGTKFLTASYD------KNIKYWDT 386 (604)
Q Consensus 323 p~~g~~L~sgs~Dg~I~IWd~~~~---~~~~~~~~------~-h~~~V~~l~fspdg~~L~s~s~D------g~I~vWD~ 386 (604)
++...++++|..+++|.|+|+... .+..+++. . -...-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 663455566777899999998322 15556652 1 11234567888999 77777665 78999999
Q ss_pred CCCcEEEEeeCCCc----ceEEEEccCCCCCcEEEEEE-------------------cCCeEEEEeCCCCceEEEEcCc-
Q 007431 387 ETGQVIRTFSTGKI----PYVVKLNPDDDKQNILLAGM-------------------SDKKIVQWDMNTKEITQEYDQH- 442 (604)
Q Consensus 387 ~t~~~i~~~~~~~~----~~~~~~~~~~~~~~~lvsg~-------------------~dg~I~iwD~~s~~~~~~~~~h- 442 (604)
.+++++.++..+.. .+-+.+.+.. +.+++.. ...+|.+||+.+++.++++..-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~---~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPN---EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTT---TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCC---CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999999975422 3345566654 4555553 3789999999999888887642
Q ss_pred C-CceeEEEE--eCCCCEEEEEe------CCCcEEEEECCCCeE--EEEeecCC-----------------CCcccEEEE
Q 007431 443 L-GAVNTITF--VDSNRRFVTSS------DDKSLRVWEFGIPVV--IKYISEPH-----------------MHSMPSISL 494 (604)
Q Consensus 443 ~-~~V~~i~~--sp~~~~l~sgs------~Dg~I~iwdl~~~~~--~~~~~~~~-----------------~~~v~~l~~ 494 (604)
. .....|.| +|+++++++++ .+++|.+|....+.. ...+..+. ......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1 23455656 99999877766 566888776654321 11111011 234678999
Q ss_pred cCCCCEEEEEEc-CCeEEEEEcCCceeecccccc-cC-----------cccccceEEEEEcCCCCEEEEEc
Q 007431 495 HPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRF-AG-----------HIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 495 sp~g~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~-~~-----------~~~~~~v~~l~~spdg~~L~sgs 552 (604)
+|+|++|.++.. .+.|.+||+............ .+ ....+....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988876 588999998643211111111 11 11112345699999999999988
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=2e-07 Score=97.77 Aligned_cols=226 Identities=14% Similarity=0.150 Sum_probs=150.8
Q ss_pred EEc--cCCCEEEEE-ECCCcEEEEECCCC----cEEEEee-------CC-CcceEEEEccCCCCCcEEEEEEcC------
Q 007431 364 SFC--NDGTKFLTA-SYDKNIKYWDTETG----QVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSD------ 422 (604)
Q Consensus 364 ~fs--pdg~~L~s~-s~Dg~I~vWD~~t~----~~i~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~d------ 422 (604)
.++ .++++|+.. ..++.|.|+|+.+. +.+.++. .+ ..+..+.+.+++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA----IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC----EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe----EEEEcCCCcCCCCC
Confidence 346 777777654 45788999999766 6666662 12 234455555543 66666655
Q ss_pred CeEEEEeCCCCceEEEEcCcCCc---eeEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEE
Q 007431 423 KKIVQWDMNTKEITQEYDQHLGA---VNTITFVDSNRRFVTSS-------------------DDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~---V~~i~~sp~~~~l~sgs-------------------~Dg~I~iwdl~~~~~~~~ 480 (604)
+.|.++|..+.+++..+....++ -..+.|+|+++.+++.. ...+|.+||+.+.+.+..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 79999999999999988633222 34588899999888884 368999999999888888
Q ss_pred eecCCC-CcccEEEE--cCCCCEEEEEEc------CCeEEEEEcCCceeeccccc-------ccCcc---------cccc
Q 007431 481 ISEPHM-HSMPSISL--HPNTNWLAAQSL------DNQILIYSTRERFQLNKKKR-------FAGHI---------VAGY 535 (604)
Q Consensus 481 ~~~~~~-~~v~~l~~--sp~g~~l~s~s~------Dg~I~iwd~~~~~~~~~~~~-------~~~~~---------~~~~ 535 (604)
+..+.. .....+.| +|+++++.+++. +++|.+|....+. ...... ..+.. ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCc
Confidence 765422 23344545 999999888774 5688776654321 111110 00000 0134
Q ss_pred eEEEEEcCCCCEEEEEcC-CCcEEEEeCC---CCeeEEEEecCCC--------------cEEEEEEecCCCCEEEEEe
Q 007431 536 ACQVNFSPDGRFVMSGDG-EGKCWFWDWK---SCKVFRTLKCHEG--------------VCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~-dG~I~iwd~~---t~~~~~~l~~h~~--------------~V~~v~~sp~~~~~l~tgg 595 (604)
...|.+|+||++|+++.. .+.|.+||+. +.+++..+..... .-..++++| ++++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 567999999999987764 6899999985 3466666654311 247899999 566666665
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=9.1e-11 Score=122.61 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=124.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
+.+|++++.||.|+.||. .+++.+..+.. ..+.+..+..++..+++++.||.|+.||..+|+.+..+.......+ .
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-Q 84 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-T
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-c
Confidence 678999999999999999 68888888876 5666666777888888888999999999999988776643211100 0
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 007431 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
..|.-.....+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.++.|+.||..+++.+..+...
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~- 159 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF- 159 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence 11111012467888889999999999999888776543 2345668888999999999999999887654333211
Q ss_pred CCcccEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE----EEEcCCCcEE
Q 007431 486 MHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV----MSGDGEGKCW 558 (604)
Q Consensus 486 ~~~v~~l~~sp~g---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L----~sgs~dG~I~ 558 (604)
.....++.++. ..+++++.+|.|+.||..++..+.... +.. ..+....++++|... +.+ ++.++
T Consensus 160 --~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~----pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 160 --DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YAS----PVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp --EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSS----CEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred --cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCC----ceEEEEEecCCceEeccceeec--cccee
Confidence 11222333322 567788999999999998876654332 111 112234556666432 122 33455
Q ss_pred EEeCCCCe
Q 007431 559 FWDWKSCK 566 (604)
Q Consensus 559 iwd~~t~~ 566 (604)
.+|..+|+
T Consensus 231 ~ld~~tG~ 238 (369)
T 2hz6_A 231 YLTFMSGE 238 (369)
T ss_dssp HHHHHHHH
T ss_pred eeehhcCC
Confidence 66655555
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=1.4e-08 Score=103.14 Aligned_cols=265 Identities=9% Similarity=0.018 Sum_probs=168.5
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC
Q 007431 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t 388 (604)
+..+...+.++...++ +. |+.++.+ |..+|. +++.+..+...........+. +..|+.++.++.|..+|..
T Consensus 55 ~~~~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~--~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~- 125 (330)
T 3hxj_A 55 FKSGEIIECRPSIGKD-GT-IYFGSDK--VYAINP--DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD- 125 (330)
T ss_dssp SCGGGEEEECCEETTT-TE-ECCSSCE--EEEECC--CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-
T ss_pred EecCCCcccceEEecC-Cc-EEEecCc--EEEECC--CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-
Confidence 3334445667777665 44 5555544 777875 444443333333333344443 5568888889999999998
Q ss_pred CcEEEEeeCCCcc-eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcE
Q 007431 389 GQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 467 (604)
Q Consensus 389 ~~~i~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I 467 (604)
++....+...... ........ ..+++++.++.|..+|.. ++....+......+.++.+.+++..++ ++ +.|
T Consensus 126 g~~~~~~~~~~~~~~~~~~~~~----g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l 197 (330)
T 3hxj_A 126 GTEKWRFKTKKAIYATPIVSED----GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKV 197 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTT----SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSE
T ss_pred CCEEEEEcCCCceeeeeEEcCC----CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEE
Confidence 8877766543322 22222222 337778888999999999 888777776666778888877776554 44 789
Q ss_pred EEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007431 468 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
..+| .++........ ....+.++...+++. |.+++.++.|..++.. +..+...... . ..+..+.+.++| .
T Consensus 198 ~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~~~-~----~~~~~~~~~~~g-~ 267 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFKTG-K----RIESSPVIGNTD-T 267 (330)
T ss_dssp EEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEECS-S----CCCSCCEECTTS-C
T ss_pred EEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEeeCC-C----CccccceEcCCC-e
Confidence 9999 66655554432 345688888888775 5566778888888753 3333222211 1 112224455555 5
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 548 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 548 L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|+.++.+|.|..+|. +++.+..+......+.++...+ ++ .|..++.+|.|++.
T Consensus 268 l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 268 IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NG-TIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TC-CEEEECTTSCEEEE
T ss_pred EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CC-EEEEEcCCCeEEEE
Confidence 667788889999995 7888877776666666777756 44 47778889998764
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=3.5e-08 Score=111.09 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=177.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCce-----------eeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV-----------RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V-----------~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|+.++.++.|..+|. .+++.+..+....... ..+++ .+..++.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 567778888899999998 6888888775432210 12233 356788888999999999999999998
Q ss_pred eeCCCcc--eEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCC----------------------
Q 007431 395 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG---------------------- 444 (604)
Q Consensus 395 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~---------------------- 444 (604)
+...... ..+...|.-.+ ..++++.. +|.|+.+|..+|+.+..+.....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 8763211 00000000011 34555543 58999999999999888753110
Q ss_pred ---------ceeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEeecC-CC-------Cc
Q 007431 445 ---------AVNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEP-HM-------HS 488 (604)
Q Consensus 445 ---------~V~~i~~sp~~~~l~sgs~Dg-------------------~I~iwdl~~~~~~~~~~~~-~~-------~~ 488 (604)
....+++.+...+++.++.++ .|..+|..+++..-.+... +. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 112468888888888888766 3999999999888776543 21 12
Q ss_pred ccEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeccccccc-----------Cc--------------------cccc
Q 007431 489 MPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-----------GH--------------------IVAG 534 (604)
Q Consensus 489 v~~l~~sp~g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-----------~~--------------------~~~~ 534 (604)
+....+..+|+ .|++++.+|.++++|..++..+....... +. ....
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22223334664 68889999999999998887652211100 00 0000
Q ss_pred ceEEEEEcCCCCEEEEE------------------------------------cCCCcEEEEeCCCCeeEEEEecCCCcE
Q 007431 535 YACQVNFSPDGRFVMSG------------------------------------DGEGKCWFWDWKSCKVFRTLKCHEGVC 578 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sg------------------------------------s~dG~I~iwd~~t~~~~~~l~~h~~~V 578 (604)
.-..++++|+..++++. ..+|.|..||..+++.+.....+.. .
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-W 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-C
Confidence 00126788877766542 1248899999999999988875432 2
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 579 IGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+.. .+.+|+.++.||.|++||
T Consensus 461 ~~~~~~t-~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 461 NGGTLST-AGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCceeEe-CCCEEEEECCcccchhhh
Confidence 3333444 456888899999999986
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=1.6e-06 Score=85.53 Aligned_cols=248 Identities=10% Similarity=0.001 Sum_probs=152.8
Q ss_pred EEEEEECCCcEEEEecCCCCee----eEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEeeCC-Ccc
Q 007431 328 LILSAGMDTKVKIWDVVNSGKC----MRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTG-KIP 401 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~----~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~t~~~i~~~~~~-~~~ 401 (604)
+|+.+.. +.|+.+++...... ...+......+..++|++++..|+.+. ..+.|.++++..+.....+... ..+
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4444443 47888887322110 112222234578999999766555554 5689999999876554443332 456
Q ss_pred eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCeEE
Q 007431 402 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVI 478 (604)
Q Consensus 402 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~---Dg~I~iwdl~~~~~~ 478 (604)
..+.+.+.. +.++++....+.|.++++..................++++|++..|+.+.. .+.|..+++.....
T Consensus 82 ~~ia~d~~~--~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 82 EGIALDHLG--RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp EEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred cEEEEEecC--CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 677776643 356666667889999998754433333333356789999997666555543 36888888764332
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007431 479 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 557 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I 557 (604)
..+..........+++++++..|+++. ..+.|.+++.......... .+ ......++.. .+.++++....+.|
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~---~~---~~~P~gi~~d-~~~lyva~~~~~~v 231 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EG---LQYPFAVTSY-GKNLYYTDWKTNSV 231 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE---EC---CCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe---cC---CCCceEEEEe-CCEEEEEECCCCeE
Confidence 222222334578899999877766655 4578999998754322111 11 1223345554 34344444467899
Q ss_pred EEEeCCCCeeEEEEecCCC-cEEEEEEecC
Q 007431 558 WFWDWKSCKVFRTLKCHEG-VCIGCEWHPL 586 (604)
Q Consensus 558 ~iwd~~t~~~~~~l~~h~~-~V~~v~~sp~ 586 (604)
..+|..+++.+..+..... ...++++.|+
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEeCCCCCceEEEccccccccceeeecCc
Confidence 9999999999988875432 3577888884
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=8.2e-08 Score=104.10 Aligned_cols=229 Identities=9% Similarity=0.039 Sum_probs=153.0
Q ss_pred eEEEcc-----CCCEEEEEEC-CCcEEEEECCCCcEEE--EeeCCCcceEEEEccCCCCCcEEEEEE-------------
Q 007431 362 DISFCN-----DGTKFLTASY-DKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGM------------- 420 (604)
Q Consensus 362 ~l~fsp-----dg~~L~s~s~-Dg~I~vWD~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~lvsg~------------- 420 (604)
....|. ||++|+.+.. +..|.+.|+.+.++.. .+..+..+..+.+...++ ..++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSST
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC-CcEEEEecccccccCCCCccc
Confidence 355555 7888877665 4579999999999888 444456666666632122 24556653
Q ss_pred -----cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC------------------------------
Q 007431 421 -----SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK------------------------------ 465 (604)
Q Consensus 421 -----~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg------------------------------ 465 (604)
.++.+.++|..+.+.+.++.--. ....+.++|+++++++++.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 35689999999998888876322 456788999999998888543
Q ss_pred --------cEEEEECCC--CeE-EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee-----ccc-ccc
Q 007431 466 --------SLRVWEFGI--PVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-----NKK-KRF 527 (604)
Q Consensus 466 --------~I~iwdl~~--~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~-----~~~-~~~ 527 (604)
.|.|.|..+ ... +..+.. .....++.++|||+++++++ .+++|.++|+.+.... ... ...
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 467777766 333 444432 23567899999999887776 5689999999854210 000 001
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------CeeEEEEecCCCcEE-----EEEEecCCCCEEE
Q 007431 528 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCI-----GCEWHPLEQSKVA 592 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t----------~~~~~~l~~h~~~V~-----~v~~sp~~~~~l~ 592 (604)
...........++|+|+|...++..-++.|.+||+.+ .+.+.++..|-.+-. ++.++| ++++|+
T Consensus 325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~ 403 (595)
T 1fwx_A 325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLV 403 (595)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEE
T ss_pred EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEE
Confidence 1111233456799999994445666899999999977 667888887765421 123467 666777
Q ss_pred EEe
Q 007431 593 TCG 595 (604)
Q Consensus 593 tgg 595 (604)
++.
T Consensus 404 ~~N 406 (595)
T 1fwx_A 404 CLS 406 (595)
T ss_dssp EEE
T ss_pred EcC
Confidence 664
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.92 E-value=2.2e-07 Score=91.67 Aligned_cols=212 Identities=10% Similarity=0.046 Sum_probs=145.5
Q ss_pred eeeEEecCCCC--ceeeEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC
Q 007431 348 KCMRTYMGHSK--AVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 348 ~~~~~~~~h~~--~V~~l~fspdg~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+..+.......+...+ ..++++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCC
Confidence 4555553 443 3579999998755555543 589999999999999998765554444444433 25666677789
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----CcccEEEEcCCCC
Q 007431 424 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM----HSMPSISLHPNTN 499 (604)
Q Consensus 424 ~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~~v~~l~~sp~g~ 499 (604)
.|.++|..+.+.+.++...... ...++++++.++++..++.|.++|..+.+.+..+..... ..+..+.+. ++.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999999888533121 233555777777777789999999999888888764321 135577777 665
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccccc--------CcccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCCCC
Q 007431 500 WLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~l~~spdg~~L-~sgs~dG~I~iwd~~t~ 565 (604)
.++....++.|.+.|..++..+..+..-. ..........|+|+|+++.| +++...++|+..++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 44444467899999999887655443210 01111345789999998654 56667888998887553
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=7.8e-09 Score=104.93 Aligned_cols=250 Identities=10% Similarity=0.033 Sum_probs=160.7
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-eEEE
Q 007431 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVK 405 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-~~~~ 405 (604)
..|..++.++.|..|| .+++.+..+..+...+.++...++|. |+.++.+ |..+|. +++.+..+...... ....
T Consensus 31 g~l~v~t~~~~l~~~d--~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN--TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC--TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC--CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 4566777788899998 35666555554555567788877765 4445444 888886 56554433322211 1111
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 007431 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
+. ...+.+++.++.|..+|.. ++....+..+...+.++...+++. ++.++.++.|..+|.. +........ .
T Consensus 105 ~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~ 175 (330)
T 3hxj_A 105 IF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-N 175 (330)
T ss_dssp EE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-S
T ss_pred EE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-C
Confidence 21 2458888889999999998 877777766666677777776665 5667778999999998 666555543 3
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 486 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
...+.++...+++.+++.. +.|..+| .++........ . ...+.++...++|. |..++.++.|..+| .++
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~---~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g 244 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYA---G--YWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDG 244 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECC---S--SCCCSCCEECTTSC-EEEEETTTEEEEEC-TTS
T ss_pred CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEcc---C--CcceeceEECCCCe-EEEEcCCCeEEEEC-CCC
Confidence 4457777887788755544 7899998 55443322221 1 13345577788875 45566678888887 567
Q ss_pred eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 566 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+..+......+.++...+ + ..|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcC-C-CeEEEecCCCCEEEEC
Confidence 77777765544444455544 3 3577778887787765
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=4.5e-07 Score=89.35 Aligned_cols=206 Identities=8% Similarity=-0.029 Sum_probs=139.5
Q ss_pred CcEEEEeeCCCcc--eEEEEccCCCCCcEEEEEEc--CCeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEeC
Q 007431 389 GQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 389 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~s~~~~~~~~~h~~-~V~~i~~sp~~~~l~sgs~ 463 (604)
.+.+.++..+... .-+.+.++ +.++++.+. ++.|.++|+.+++.+..+.-... ....+++.. +..+++.-.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred ceEEEEEECCCCCCcccEEEeCC---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence 3456666665443 45556543 244444443 68999999999999988753222 223566652 345556667
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
++.+.++|..+.+.+..+..+ .. ....++++++.++++..++.|.++|..+......+..-.....-.....+.|.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 899999999999999888654 12 23446668887777777899999999886655444432211111235567787
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007431 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
+|...+....++.|.+.|..+++.+..+... .....+++|+|++..+++|+...+.|.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 7755555556889999999999999999742 1356899999966677888877777765
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.86 E-value=7.8e-08 Score=99.02 Aligned_cols=222 Identities=10% Similarity=0.082 Sum_probs=139.4
Q ss_pred CceeeEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEeeC------C--CcceEEEEccCCCCCcEEEEEEc-----C
Q 007431 358 KAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFST------G--KIPYVVKLNPDDDKQNILLAGMS-----D 422 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~------~--~~~~~~~~~~~~~~~~~lvsg~~-----d 422 (604)
..+..|+++++|+.|++... ++.++||.+.+++ +..+.. . ..+..+.+.++ +.++++... +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcCCC
Confidence 67899999999999888642 3435666655554 333321 1 23445555443 245555443 5
Q ss_pred CeEEEEeCCCCceEEEEcCc------CCceeEEEEeCCCCE-EEEEe---CCCcEEEEECCCCeEEEEeecCCCCccc-E
Q 007431 423 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRR-FVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMP-S 491 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h------~~~V~~i~~sp~~~~-l~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~~v~-~ 491 (604)
+.|.+||+.+++.+..+... ...++.+++.+++.. +++.+ .++.|.+||+.++.....+. .|..... .
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~ 171 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPED 171 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCS
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccc
Confidence 89999999999877776532 235689999976544 45554 57899999998887665542 2211110 1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCC---CCe-
Q 007431 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWK---SCK- 566 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-~I~iwd~~---t~~- 566 (604)
..+.++|..+.+.+.++.+..|. ..+..++|+|+|+.|+.++..+ .|+.++.. .+.
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred cceeECCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 33445666666666676664432 1234699999999998887666 55555532 111
Q ss_pred ----eEE--EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 567 ----VFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 567 ----~~~--~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
... ...++.+....+++.+ ++.++++...++.|.+||
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred ChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 000 1113344456789998 677888888889999986
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=6.5e-07 Score=87.36 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=132.7
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCcee--EEEEeCCCCEEEEEeCCC
Q 007431 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVN--TITFVDSNRRFVTSSDDK 465 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~--~i~~sp~~~~l~sgs~Dg 465 (604)
+.+.++........-.+..++ +.++.+++.+| .|+.+|+.+++.+..+.-.. ... .+++. .++.+++.-.++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~-g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW-KDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSS
T ss_pred EEEEEecCCCCcccceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe-CCEEEEEEeeCC
Confidence 456677766666555444442 36677777766 89999999999998886433 332 34544 234445555689
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007431 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 545 (604)
.+.+||..+.+.+..+..+. ....++++++.|+.+..++.|.++|..+......+........-..+..+.|. +|
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 99999999999999887533 22334457777777777888999999886655544432211111234456776 67
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEEEEecC------------CCcEEEEEEecCCCCEEEEE
Q 007431 546 RFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------EGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 546 ~~L~sgs~dG~I~iwd~~t~~~~~~l~~h------------~~~V~~v~~sp~~~~~l~tg 594 (604)
++.+..-.+..|.+.|..+++.+..+... ....++++|+|+...+++||
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 65555556889999999999999998753 23679999999555555555
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=7.6e-07 Score=98.47 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=170.2
Q ss_pred CCEEEEEEC-CCcEEEEecCCCCeeeEEecCCCCc-----------eeeEEEccCCCE----EEEEECCCcEEEEECCCC
Q 007431 326 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKA-----------VRDISFCNDGTK----FLTASYDKNIKYWDTETG 389 (604)
Q Consensus 326 g~~L~sgs~-Dg~I~IWd~~~~~~~~~~~~~h~~~-----------V~~l~fspdg~~----L~s~s~Dg~I~vWD~~t~ 389 (604)
+..|+.++. ++.|.-+|...+++.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456667776 7888888872367777666533211 133566444444 888889999999999999
Q ss_pred cEEEEeeCCCc-----ceEEEEccCCCCCcEEEEEE------cCCeEEEEeCCCCceEEEEcCcCCce------------
Q 007431 390 QVIRTFSTGKI-----PYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAV------------ 446 (604)
Q Consensus 390 ~~i~~~~~~~~-----~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~s~~~~~~~~~h~~~V------------ 446 (604)
+.+........ ....-... + ..+++++ .++.|+.+|..+|+++..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~---~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV---K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE---T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCccceeecCCEEE---C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 99988765431 11000011 1 2455655 37999999999999988775432110
Q ss_pred --------------------------eEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEeecC
Q 007431 447 --------------------------NTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEP 484 (604)
Q Consensus 447 --------------------------~~i~~sp~~~~l~sgs~D----------------g~I~iwdl~~~~~~~~~~~~ 484 (604)
..+++.+...+++.++.+ ++|..+|..+++..-.+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 135666777788877665 37999999999887766543
Q ss_pred CCC--------cccEEEEc-CCC---CEEEEEEcCCeEEEEEcCCceeeccccccc------------Ccc---------
Q 007431 485 HMH--------SMPSISLH-PNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHI--------- 531 (604)
Q Consensus 485 ~~~--------~v~~l~~s-p~g---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------------~~~--------- 531 (604)
+.. ...-+... .+| ..++.++.+|.++++|..++..+....... +..
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 221 11112222 467 467778899999999998887654332110 000
Q ss_pred -------------cccceEEEEEcCCCCEEEEEc---------------------------------------CCCcEEE
Q 007431 532 -------------VAGYACQVNFSPDGRFVMSGD---------------------------------------GEGKCWF 559 (604)
Q Consensus 532 -------------~~~~v~~l~~spdg~~L~sgs---------------------------------------~dG~I~i 559 (604)
....-..++++|+..++++.. ..|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 000001356777766655421 3478999
Q ss_pred EeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 560 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 560 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
||+.+++.+....... ++.+-.... .+.+|+.++.||.|+.||
T Consensus 458 ~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 458 YNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp ECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEE
Confidence 9999999988876321 111111122 345778899999999886
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.82 E-value=8.7e-07 Score=97.75 Aligned_cols=274 Identities=12% Similarity=0.093 Sum_probs=169.7
Q ss_pred CCEEEEEEC-CCcEEEEecCCCCeeeEEecCCCC-ce----------eeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007431 326 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSK-AV----------RDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 326 g~~L~sgs~-Dg~I~IWd~~~~~~~~~~~~~h~~-~V----------~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
+..|+.++. ++.|.-+|...+++.+..+..... .+ ..++. .+..++.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456666676 788888887236777766643221 01 12233 35678888899999999999999998
Q ss_pred EeeCCCcc--eEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCCc--------------------
Q 007431 394 TFSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 445 (604)
Q Consensus 394 ~~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~~-------------------- 445 (604)
.+...... ..+...|.-.+ ..+++++. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 87654311 00000000011 34666655 799999999999998877542211
Q ss_pred ------------------eeEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEeecCCC-----
Q 007431 446 ------------------VNTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEPHM----- 486 (604)
Q Consensus 446 ------------------V~~i~~sp~~~~l~sgs~D----------------g~I~iwdl~~~~~~~~~~~~~~----- 486 (604)
...+++.+....++.++.+ +.|..+|..+++.+-.+...+.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0235667766677666532 3599999999988776653221
Q ss_pred ---CcccEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeecccccccCc--------ccccc-----------------
Q 007431 487 ---HSMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFAGH--------IVAGY----------------- 535 (604)
Q Consensus 487 ---~~v~~l~~sp~g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--------~~~~~----------------- 535 (604)
....-+...++|+ .++.++.+|.++++|..++..+.....-... ....+
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 1111122224674 5777888999999999887665433211000 00000
Q ss_pred ---------eEEEEEcCCCCEEEEEc-------------------------------------CCCcEEEEeCCCCeeEE
Q 007431 536 ---------ACQVNFSPDGRFVMSGD-------------------------------------GEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 536 ---------v~~l~~spdg~~L~sgs-------------------------------------~dG~I~iwd~~t~~~~~ 569 (604)
-..++++|+..+|++.. .+|.|..||..+++.+.
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 02367888877777653 35789999999999988
Q ss_pred EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 570 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 570 ~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++.... .+.+..+.. .+.+|+.++.||.|+.||
T Consensus 459 ~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 459 TKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEE
Confidence 886432 222222233 345777889999999886
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.81 E-value=6.3e-07 Score=87.51 Aligned_cols=195 Identities=10% Similarity=0.004 Sum_probs=136.5
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCce--eEEEEeCCCCEEEEEeCCCcE
Q 007431 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDDKSL 467 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V--~~i~~sp~~~~l~sgs~Dg~I 467 (604)
+.+..+..........+..++ +.++++.+.+|.|+++|+.+++.+..+ -.... -.+++.. ++.+++.-.++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 456667666666544444433 477888888899999999999988877 22333 3355543 3555666678999
Q ss_pred EEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007431 468 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
.+||..+.+.+..+..+. .-..++ ++++.|+++..++.|.++|..+......+..-.....-..++.+.|. +|++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~--eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSG--EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEETTTTEEEEEEECSS--CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCcCcEEEEEeCCC--ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 999999999999987532 223444 57888888878999999999887666554443322112344567776 7765
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCcEEEEEEecCCCCEEEEE
Q 007431 548 VMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 548 L~sgs~dG~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~tg 594 (604)
.+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 555556889999999999999988742 13679999999666677766
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=5.5e-07 Score=87.86 Aligned_cols=198 Identities=10% Similarity=0.117 Sum_probs=136.5
Q ss_pred eeeEEecCCCCc--eeeEEEccCCCEEEEEECCC--cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC
Q 007431 348 KCMRTYMGHSKA--VRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 348 ~~~~~~~~h~~~--V~~l~fspdg~~L~s~s~Dg--~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
+.++++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..........+.+.++ .++++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~--~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD--KIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT--EEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC--EEEEEEeeCC
Confidence 445666 35433 4788998 677777777766 89999999999999998776655544444332 5666666799
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CCc---ccEEEEcCCCC
Q 007431 424 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHS---MPSISLHPNTN 499 (604)
Q Consensus 424 ~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~~---v~~l~~sp~g~ 499 (604)
.+.+||..+.+.+.++.... ....+++++..|+.+..++.|.++|..+.+.+..+.... ..+ ++.+.|. +|.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999887532 223333567777777667889999999988888876422 222 3446776 676
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccc--cc-----CcccccceEEEEEcCCCCEEEEEcC
Q 007431 500 WLAAQSLDNQILIYSTRERFQLNKKKR--FA-----GHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~--~~-----~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
.++..-.++.|.+.|..++.....+.. +. ........+.|+|+|+++.|++.+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 555544688999999988876544432 11 1111234678999998777766553
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=3e-06 Score=93.60 Aligned_cols=274 Identities=15% Similarity=0.084 Sum_probs=167.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc---------eeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA---------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~---------V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~ 396 (604)
+..|+.++.++.|.-+|. .+++.+..+...... ...+++ .+..++.++.|+.|..+|..+|+.+..+.
T Consensus 68 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEC-CCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 445666666445888898 678887776543221 022233 35678888899999999999999998876
Q ss_pred CCCc-----ce-EEEEccCCCCC-cEEEEEEc------CCeEEEEeCCCCceEEEEcCcCCce-----------------
Q 007431 397 TGKI-----PY-VVKLNPDDDKQ-NILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV----------------- 446 (604)
Q Consensus 397 ~~~~-----~~-~~~~~~~~~~~-~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~~V----------------- 446 (604)
.... .. .-.+......+ ..+++++. ++.|+.+|..+|+.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 5431 10 01111111111 25666653 7999999999999887664321000
Q ss_pred ------------------------eEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCeEE
Q 007431 447 ------------------------NTITFVDSNRRFVTSSD--------------------D----KSLRVWEFGIPVVI 478 (604)
Q Consensus 447 ------------------------~~i~~sp~~~~l~sgs~--------------------D----g~I~iwdl~~~~~~ 478 (604)
..+++.|...+++.++. | +.|..+|..+++..
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 13566677677776653 2 58999999999888
Q ss_pred EEeecCCCC-----cccE-EEEc---CCCC---EEEEEEcCCeEEEEEcCCceeeccccccc------------Cc----
Q 007431 479 KYISEPHMH-----SMPS-ISLH---PNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GH---- 530 (604)
Q Consensus 479 ~~~~~~~~~-----~v~~-l~~s---p~g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------------~~---- 530 (604)
-.+...+.. .+.. +.+. .+|+ .++.++.+|.++++|..++..+.....-. +.
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 776542211 1111 2222 4664 78888999999999998876653322110 00
Q ss_pred -------------ccccc-----------eEEEEEcCCCCEEEEEc---------------------------------C
Q 007431 531 -------------IVAGY-----------ACQVNFSPDGRFVMSGD---------------------------------G 553 (604)
Q Consensus 531 -------------~~~~~-----------v~~l~~spdg~~L~sgs---------------------------------~ 553 (604)
..... -..++++|+..++++.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 00000 01356677655555432 3
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 554 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 554 dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+|.|..||+.+++.+.+...+.. +.+-.... .+.+|+.++.||.|+.||
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEE
Confidence 68899999999999888764322 22111122 345788899999999886
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=3e-06 Score=95.31 Aligned_cols=259 Identities=14% Similarity=0.181 Sum_probs=163.2
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC----CceeeEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEe
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRTF 395 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~----~~V~~l~fspdg~~L~s~s~------Dg~I~vWD~~t~~~i~~~ 395 (604)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+--.-.++ .+++++. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDA-KTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEET-TTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 457888889999999999 6788877765421 111111011134 4555443 589999999999999988
Q ss_pred eCCC-cc-------------------------------eEEEEccCCCCCcEEEEEEcCC-------------------e
Q 007431 396 STGK-IP-------------------------------YVVKLNPDDDKQNILLAGMSDK-------------------K 424 (604)
Q Consensus 396 ~~~~-~~-------------------------------~~~~~~~~~~~~~~lvsg~~dg-------------------~ 424 (604)
.... .+ ....+.+. ..+++++..++ .
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE---LDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 6421 00 01233332 25677777665 4
Q ss_pred EEEEeCCCCceEEEEcC--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCeEEEEeecCC-------
Q 007431 425 IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPH------- 485 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~--h~-------~~V~~i~~sp~~~---~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~------- 485 (604)
|..+|..+++.+..++. |. .++....+..+++ .++.++.+|.++++|..+++.+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 99999999999988864 22 2333333334664 68899999999999999998774432111
Q ss_pred ----CC------------------------cccEEEEcCCCCEEEEEE--------------------------------
Q 007431 486 ----MH------------------------SMPSISLHPNTNWLAAQS-------------------------------- 505 (604)
Q Consensus 486 ----~~------------------------~v~~l~~sp~g~~l~s~s-------------------------------- 505 (604)
.. .-..++++|+..++++..
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 00 011267788777666532
Q ss_pred ----cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE-EE
Q 007431 506 ----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IG 580 (604)
Q Consensus 506 ----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V-~~ 580 (604)
.+|.|..||+.++..+........ .....+...+.+|++|+.+|.|++||..+++.+..++...+.. .-
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p 505 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP 505 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCc
Confidence 237789999988876544432111 1112334467899999999999999999999999998654311 12
Q ss_pred EEEecCCCCEEEEEe
Q 007431 581 CEWHPLEQSKVATCG 595 (604)
Q Consensus 581 v~~sp~~~~~l~tgg 595 (604)
+.+..++..+++.++
T Consensus 506 ~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 506 MTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 233332333555544
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.76 E-value=2.4e-06 Score=94.24 Aligned_cols=238 Identities=14% Similarity=0.031 Sum_probs=152.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC----Cceee-EEEccCCCEEEEEEC------CCcEEEEECCCCcEEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~L~s~s~------Dg~I~vWD~~t~~~i~~ 394 (604)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+ ... .++ .+++++. ++.|..+|..+|+.+.+
T Consensus 115 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDA-KTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 567888888999999999 6787776654221 02221 111 134 5555554 79999999999999998
Q ss_pred eeCCCcc---------------------------------------eEEEEccCCCCCcEEEEEEcC-------------
Q 007431 395 FSTGKIP---------------------------------------YVVKLNPDDDKQNILLAGMSD------------- 422 (604)
Q Consensus 395 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~lvsg~~d------------- 422 (604)
+...... ..+.+.+. ..+++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~---~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK---LNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT---TTEEEEECCCCSCSCGGGSCSCC
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC---CCeEEEECCCCccccCCccCCCc
Confidence 7654321 01122221 2355555532
Q ss_pred ---CeEEEEeCCCCceEEEEcCcC--C----ceeE---EEEeCCCC---EEEEEeCCCcEEEEECCCCeEEEEeecCCC-
Q 007431 423 ---KKIVQWDMNTKEITQEYDQHL--G----AVNT---ITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM- 486 (604)
Q Consensus 423 ---g~I~iwD~~s~~~~~~~~~h~--~----~V~~---i~~sp~~~---~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~- 486 (604)
+.|..+|..+++.+..++... . .+.. +....+++ .++.++.+|.++++|..+++.+........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 369999999999988875321 1 1112 22223663 577888999999999999988766543220
Q ss_pred -----------Ccc--------------------------cEEEEcCCCCEEEEEEc-----------------------
Q 007431 487 -----------HSM--------------------------PSISLHPNTNWLAAQSL----------------------- 506 (604)
Q Consensus 487 -----------~~v--------------------------~~l~~sp~g~~l~s~s~----------------------- 506 (604)
.++ ..++++|+..+|++.+.
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 111 24678888777777653
Q ss_pred --------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 507 --------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 507 --------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
++.|..||+.++..+.....- ..... ..+...+..|+.++.+|.|+.||..+|+.+..++
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 367888888877655433221 11111 1122346678889999999999999999999998
Q ss_pred cCC
Q 007431 573 CHE 575 (604)
Q Consensus 573 ~h~ 575 (604)
...
T Consensus 503 ~~~ 505 (571)
T 2ad6_A 503 MPS 505 (571)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.75 E-value=3.3e-06 Score=81.69 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=131.2
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCCc
Q 007431 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
+.+..+........-.+..++ +.++.+.+.. ..|+.+|+.+++.+..+.-.... --.+++. .++.++..-.++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 455666555555544444433 3566666654 49999999999999887543322 1334444 3445556667899
Q ss_pred EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007431 467 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
+.+||..+.+.+..+..+. .-..+ .+++..|+++..++.|.++|..+......+..-.....-..++.+.+. +|+
T Consensus 87 v~v~D~~tl~~~~ti~~~~--~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG--EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSS--CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCC--CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 9999999999999987543 22344 456777777777899999999886655544432221111334556665 666
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCcEEEEEEecCCCCEEEEE
Q 007431 547 FVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 547 ~L~sgs~dG~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~tg 594 (604)
..+..-.+..|.+.|..+++.+..+... ....++++|+|....+++||
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556789999999999999998732 13679999999655555555
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.72 E-value=1.1e-05 Score=92.55 Aligned_cols=276 Identities=10% Similarity=0.098 Sum_probs=165.3
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-C-CCc-eeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007431 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-H-SKA-VRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h-~~~-V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
|.+|...++ +.+.+ ++. +-|.+|+. .+++.. .+.. + ... |.++...+++.+. .++.++.|..|+..+++..
T Consensus 133 i~~i~~d~~-g~lwi-~t~-~gl~~~~~-~~~~~~-~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~ 206 (795)
T 4a2l_A 133 VNGIEEISP-EQLLI-STP-EGLIMFDI-KESKFI-DDSFSTAMHKTIASTLYRQGDQIY-IGTSTDGLYTYSITQKTFE 206 (795)
T ss_dssp CCEEEEEET-TEEEE-EET-TEEEEEET-TTTEEE-CSSSCHHHHTCCEEEEEEETTEEE-EEESSSCEEEEETTTCCEE
T ss_pred EEEEEECCC-CCEEE-EEC-CceEEEEC-CCCEEE-eccCCCCCCcceEEEEECCCCCEE-EEECCCCEEEEeCCCCeEE
Confidence 888888877 55554 444 45888887 343322 2211 1 123 8888888877644 4666556999998877654
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-------cCCceeEEEEeCCCCEEEEEeCCC
Q 007431 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDK 465 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-------h~~~V~~i~~sp~~~~l~sgs~Dg 465 (604)
..........+..+..+.. ..+.+|+.++.|.+||..+++....... ....|.++...+++.+.+ |+.+
T Consensus 207 ~~~~~~~~~~i~~i~~d~~--g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~- 282 (795)
T 4a2l_A 207 KVIPILGTKQIQAILQQSP--TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN- 282 (795)
T ss_dssp ECC----CCCEEEEEEEET--TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-
T ss_pred EecCCCCCCeeEEEEEcCC--CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-
Confidence 3322111222333333222 3466777665699999887754433221 135689999888876555 4445
Q ss_pred cEEEEECCCCeEEEEeecC------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc-cccccCcccccceEE
Q 007431 466 SLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQ 538 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~ 538 (604)
-|.+||..+.......... ....|.++...++|. |.+|+.++-|..|+......... ............|.+
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~ 361 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSC 361 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEE
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEE
Confidence 5899998777654433211 235688999988886 55677777888888654321110 000011122345888
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--------CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 539 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+...++|.+ ..|+.++-|..|+..+++....... ....|.+++..+ ++.+|..|+.++-|.+||
T Consensus 362 i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 362 IVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp EEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred EEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 888888864 5577777799999877654332211 235688888876 555366666655566653
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.70 E-value=4.2e-05 Score=87.75 Aligned_cols=278 Identities=9% Similarity=0.041 Sum_probs=170.9
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-------CCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-------h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
+...|.+|...++ +. |..|+.++-|.+|+. ..++....... ....|.++...++|.+.+ |+.+ -|.+|
T Consensus 213 ~~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 213 GTKQIQAILQQSP-TR-IWVATEGAGLFLINP-KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIY 287 (795)
T ss_dssp -CCCEEEEEEEET-TE-EEEEEBSSCEEEEET-TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEE
T ss_pred CCCeeEEEEEcCC-CC-EEEEECCCCeEEEeC-CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheE
Confidence 3467888888776 55 444554444888987 34443332221 135699999988887544 5555 58999
Q ss_pred ECCCCcEEEEeeCC------CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC------cCCceeEEEEe
Q 007431 385 DTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HLGAVNTITFV 452 (604)
Q Consensus 385 D~~t~~~i~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~------h~~~V~~i~~s 452 (604)
|..++......... ....+.++..+.. ..+.+|+.++-|..|+..++........ ....|.++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 98877654432211 1123444444433 3477888888899998776543322110 23468899888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 453 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
++++ |..|+.++-|..|+..+.......... ....|.+++..+++..|.+|+.++-|.+|+..++.... ..
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~ 443 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FN 443 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-EC
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-ee
Confidence 7775 555777777999998776554433211 23568889888888867778887889999987653221 11
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec------CCCcEEEEEEecCCCCEEEEEeCCCc
Q 007431 526 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC------HEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~------h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
..........|.++...++|.+.+... +-|.+||..+++....... +...|.++...+ ++.+.+ |+..|
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~G- 518 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGEEG- 518 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EESSC-
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeCCc-
Confidence 111112235678888888887665544 4589999887765432211 235688888877 454444 44444
Q ss_pred EEEe
Q 007431 600 IKYW 603 (604)
Q Consensus 600 I~vW 603 (604)
|.+|
T Consensus 519 l~~~ 522 (795)
T 4a2l_A 519 LSVF 522 (795)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5444
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=2.9e-07 Score=99.83 Aligned_cols=236 Identities=9% Similarity=0.051 Sum_probs=156.1
Q ss_pred CCCCEEEEEE-CCCcEEEEecCCCCeeeEEecC-CCCceeeEEE-c-cCCCEEEEEE------------------CCCcE
Q 007431 324 KYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISF-C-NDGTKFLTAS------------------YDKNI 381 (604)
Q Consensus 324 ~~g~~L~sgs-~Dg~I~IWd~~~~~~~~~~~~~-h~~~V~~l~f-s-pdg~~L~s~s------------------~Dg~I 381 (604)
+ |++|+.+. .++.|.+.|+ ...++...+.- ....+..+++ + |++.++++++ +++.+
T Consensus 100 D-G~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred C-CCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 5 56666555 4667999999 67787775432 2345788888 5 8999998885 34689
Q ss_pred EEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--------------------------------------C
Q 007431 382 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--------------------------------------K 423 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--------------------------------------g 423 (604)
.++|..+.+.+..+..+..+.-+.+.+++ .++++.+.+ +
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 99999999999998875566667777653 445555433 2
Q ss_pred eEEEEeCCC--Cce-EEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCe------------EEEEeecCCCC
Q 007431 424 KIVQWDMNT--KEI-TQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV------------VIKYISEPHMH 487 (604)
Q Consensus 424 ~I~iwD~~s--~~~-~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~~------------~~~~~~~~~~~ 487 (604)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.. ....+ ....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCS
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCC
Confidence 477778877 444 444432 33567899999999877665 57899999998652 33333 2345
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCCce-------eecccccccCccccc---ceEEEEEcCCCCEEEEEcCC--C
Q 007431 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------QLNKKKRFAGHIVAG---YACQVNFSPDGRFVMSGDGE--G 555 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~---~v~~l~~spdg~~L~sgs~d--G 555 (604)
....++|+|+|...++.-.|++|.+|++.... ....+..+.-+-..+ ....+.++|||++|++...- .
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 67889999999545556689999999987621 011112222111101 11124568999999987632 2
Q ss_pred cE-----------EEEeCCCCee
Q 007431 556 KC-----------WFWDWKSCKV 567 (604)
Q Consensus 556 ~I-----------~iwd~~t~~~ 567 (604)
++ .++|+..+++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccccCCCCCCCcceEEEcCCCcE
Confidence 33 8899966553
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.68 E-value=2.9e-06 Score=82.04 Aligned_cols=197 Identities=10% Similarity=0.089 Sum_probs=134.6
Q ss_pred eeeEEecCCC--CceeeEEEccCCCEEEEEECC--CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC
Q 007431 348 KCMRTYMGHS--KAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 348 ~~~~~~~~h~--~~V~~l~fspdg~~L~s~s~D--g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
+.++++ .|. .-...+.|+. +.++.+.+.+ ..|+++|+.+++.+..+..........+...+ ..+++..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCC
Confidence 455666 454 3466889986 5666666665 48999999999999999877665544444433 36677777899
Q ss_pred eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-C---CcccEEEEcCCCC
Q 007431 424 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTN 499 (604)
Q Consensus 424 ~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~---~~v~~l~~sp~g~ 499 (604)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.... . ..++.+.+. +|.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999887433 223444 466777777778899999999988888775421 1 234455655 566
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccccccc--C------cccccceEEEEEcCCCCEEEEEc
Q 007431 500 WLAAQSLDNQILIYSTRERFQLNKKKRFA--G------HIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~------~~~~~~v~~l~~spdg~~L~sgs 552 (604)
.++..-.++.|.+.|..++..+..+..-. . .......+.|+++|+++.|++.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 55544468899999999887654433211 0 11223567899999876665544
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=4.1e-06 Score=81.72 Aligned_cols=190 Identities=11% Similarity=0.128 Sum_probs=135.0
Q ss_pred ceeEEecCCCC--CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEE-EECCCc
Q 007431 304 RLVHTWSGHTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN 380 (604)
Q Consensus 304 ~~i~tl~gH~~--~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s-~s~Dg~ 380 (604)
+++.++ .|.. -...|.|+. +.+..+.+.+|.|+++|+ .+++.++.+ -..........++++.|.. .-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~-~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSL-ESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCS-SCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEEC-CCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 567777 4443 347888873 678888888999999999 678877776 2233333223334444544 445789
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-----CceeEEEEeCCC
Q 007431 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSN 455 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~-----~~V~~i~~sp~~ 455 (604)
+.++|..+.+.+.++........++ +++ ..|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLC--YWN---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEE--EET---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCceeEEe--cCC---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 9999999999999998765554444 322 345666679999999999999888775422 245677887 67
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecC------------CCCcccEEEEcCCCCEEEEEE
Q 007431 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~------------~~~~v~~l~~sp~g~~l~s~s 505 (604)
..++....+..|.+.|..+++.+..+... .....+.|+++|+++.|++.+
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66666667889999999999998887632 123568899999877666655
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.66 E-value=1.4e-05 Score=88.32 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=156.5
Q ss_pred EEEEEECCCcEEEEecCCCCeeeEEecCCC----Cceee-EEEccCCCEEEEEE------CCCcEEEEECCCCcEEEEee
Q 007431 328 LILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~L~s~s------~Dg~I~vWD~~t~~~i~~~~ 396 (604)
+|+.++.|+.|..+|. .+++.+....... ..+.+ ... .++ .+++++ .++.|+.+|..+|+.+..+.
T Consensus 123 rV~v~t~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEEC-CCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 3788888999999998 6787776654322 12221 111 144 455554 37999999999999999887
Q ss_pred CCCcce---------------------------------------EEEEccCCCCCcEEEEEEcC---------------
Q 007431 397 TGKIPY---------------------------------------VVKLNPDDDKQNILLAGMSD--------------- 422 (604)
Q Consensus 397 ~~~~~~---------------------------------------~~~~~~~~~~~~~lvsg~~d--------------- 422 (604)
...... ...+.+ ...+++.+..+
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~---~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP---GTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET---TTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC---CCCEEEEeCCCCccccCcccCCCccc
Confidence 543221 111222 22466777655
Q ss_pred -CeEEEEeCCCCceEEEEcCcCCc------e---eEEEEe-CCC---CEEEEEeCCCcEEEEECCCCeEEEEeecCC---
Q 007431 423 -KKIVQWDMNTKEITQEYDQHLGA------V---NTITFV-DSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPH--- 485 (604)
Q Consensus 423 -g~I~iwD~~s~~~~~~~~~h~~~------V---~~i~~s-p~~---~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~--- 485 (604)
+.|..+|..+++.+..++..... + .-+... .++ ..++.++.+|.++++|..+++.+.......
T Consensus 277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 48999999999998887643211 1 112222 456 467778999999999999998876554211
Q ss_pred ---------CCc--------------------------ccEEEEcCCCCEEEEEE-------------------------
Q 007431 486 ---------MHS--------------------------MPSISLHPNTNWLAAQS------------------------- 505 (604)
Q Consensus 486 ---------~~~--------------------------v~~l~~sp~g~~l~s~s------------------------- 505 (604)
..+ -..++++|+..++++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 000 12466777776665543
Q ss_pred --------------cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007431 506 --------------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 506 --------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
..|.|..||+.+++.+..... ......+. +...+.+|+.++.||.|+.||.++|+.+..+
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 235677777776655433321 11111111 1225678888999999999999999999999
Q ss_pred ecCCCcE-EEEEEecCCCCEEEEE
Q 007431 572 KCHEGVC-IGCEWHPLEQSKVATC 594 (604)
Q Consensus 572 ~~h~~~V-~~v~~sp~~~~~l~tg 594 (604)
+...+.+ .-+.+..++..+|++.
T Consensus 511 ~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eCCCCcEeccEEEEeCCEEEEEEE
Confidence 8554321 1234444344445443
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.66 E-value=2.7e-05 Score=78.45 Aligned_cols=236 Identities=9% Similarity=0.012 Sum_probs=140.4
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeE
Q 007431 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKI 425 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I 425 (604)
+.+..+... .....++|+++|+++++-..++.|..||... .....+.....+..+.+.+++ +++++.... ..|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG---~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG---DLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS---CEEEEEECTTSCEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC---cEEEEeccCCcceE
Confidence 344444332 4577899999998777766789999999875 444455555566667766543 455554432 358
Q ss_pred EEEeCCCCceEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE-EEEee------c--CCCCcccEEEEc
Q 007431 426 VQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS------E--PHMHSMPSISLH 495 (604)
Q Consensus 426 ~iwD~~s~~~~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~-~~~~~------~--~~~~~v~~l~~s 495 (604)
..+|..+++....... .......++..+.+..+++...++.|.++|...... +.... . ........+ +
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 8888888876443321 222345555555554555555688999999876432 21110 0 111223344 7
Q ss_pred CCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEe
Q 007431 496 PNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK 572 (604)
Q Consensus 496 p~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~--~l~ 572 (604)
|++++|+++. ..+.|..|++.....+.....+.. ......++++++|+++++....+.|.+++.. ++... .+.
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 8887766655 467899999864111111111110 0123458999999887777778899999965 66533 233
Q ss_pred cCCCcEEEEEEe---cCCCCEEEEEe
Q 007431 573 CHEGVCIGCEWH---PLEQSKVATCG 595 (604)
Q Consensus 573 ~h~~~V~~v~~s---p~~~~~l~tgg 595 (604)
......++++|. | ++..|+.+.
T Consensus 252 ~~~~~p~~~a~~g~~~-d~~~LyVt~ 276 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEG-DCTAIYVVT 276 (306)
T ss_dssp GTCTTEEEEEECCSTT-TTTEEEEEE
T ss_pred cccCCceEEEEecccC-CCCEEEEEC
Confidence 333568999998 7 444444444
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=1.2e-05 Score=81.62 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=147.5
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC--------------------CCcceEEEEccCCCCCcEEE
Q 007431 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILL 417 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~lv 417 (604)
....+++|.++|++++++..++.|..|+..++........ ...+..+.+.+. + ..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~--~-g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ--N-NQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT--T-TEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC--C-CcEE
Confidence 4467889999998788888899999999887654322110 113445555541 2 2355
Q ss_pred EEEcCCeEEEEeCCCCceEEEEc---C-cCCceeEEEEeC-CCCEEEEEeC-----------------CCcEEEEECCCC
Q 007431 418 AGMSDKKIVQWDMNTKEITQEYD---Q-HLGAVNTITFVD-SNRRFVTSSD-----------------DKSLRVWEFGIP 475 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~~~~~~---~-h~~~V~~i~~sp-~~~~l~sgs~-----------------Dg~I~iwdl~~~ 475 (604)
++...+.|..+|..++....... + .....+.+++.+ +++.+++... ++.|..||..++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 66556668999987664322211 1 123478899999 8887776543 367888888766
Q ss_pred eEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-
Q 007431 476 VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 553 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~- 553 (604)
....... .......++++|++++|+++. ..+.|.+|++..... .....+.. ..+ ...+++.++|++.++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVK--IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEE--CSS-EEEEEECTTSCEEEEEEEE
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEe--CCC-CCCeEECCCCCEEEEecCc
Confidence 5433221 123456799999999776664 568999999875211 01111111 112 567899999987766544
Q ss_pred ---------CCcEEEEeCCCCeeEEEEecCC----CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 554 ---------EGKCWFWDWKSCKVFRTLKCHE----GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 554 ---------dG~I~iwd~~t~~~~~~l~~h~----~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+.|..+|. .++.+..+.... ..+.++++. ++.++++....+.|.+++
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEE
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEe
Confidence 467889986 578887776543 245666663 455566555667777653
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=3.1e-05 Score=85.51 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=158.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCC----cee-eEEEcc---CCC-EEEEEE------CCCcEEEEECCCCc
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----AVR-DISFCN---DGT-KFLTAS------YDKNIKYWDTETGQ 390 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~----~V~-~l~fsp---dg~-~L~s~s------~Dg~I~vWD~~t~~ 390 (604)
+..|+.++.|+.|..+|. .+++.+..+..... .+. ...... +|+ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~-~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNK-NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 467888889999999999 67887776653321 111 111221 233 555554 37899999999999
Q ss_pred EEEEeeCCCcce------------------------------------------EEEEccCCCCCcEEEEEEc-------
Q 007431 391 VIRTFSTGKIPY------------------------------------------VVKLNPDDDKQNILLAGMS------- 421 (604)
Q Consensus 391 ~i~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~lvsg~~------- 421 (604)
.+.......... ...+.+ ...+++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~---~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA---ETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET---TTTEEEEEECCBSSSCG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC---CCCEEEEeCCCCCcccC
Confidence 998765431100 011111 2245666653
Q ss_pred -------------C----CeEEEEeCCCCceEEEEcC--cCC----ceeE-EEEe---CCCC---EEEEEeCCCcEEEEE
Q 007431 422 -------------D----KKIVQWDMNTKEITQEYDQ--HLG----AVNT-ITFV---DSNR---RFVTSSDDKSLRVWE 471 (604)
Q Consensus 422 -------------d----g~I~iwD~~s~~~~~~~~~--h~~----~V~~-i~~s---p~~~---~l~sgs~Dg~I~iwd 471 (604)
| +.|..+|..+++.+..++. |.. .+.. +.+. .+++ .++.++.+|.|+++|
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 6899999999999988753 211 1111 2222 3563 788899999999999
Q ss_pred CCCCeEEEEeecCCC------------Cc--------------------------------ccEEEEcCCCCEEEEEEc-
Q 007431 472 FGIPVVIKYISEPHM------------HS--------------------------------MPSISLHPNTNWLAAQSL- 506 (604)
Q Consensus 472 l~~~~~~~~~~~~~~------------~~--------------------------------v~~l~~sp~g~~l~s~s~- 506 (604)
..+++.+........ .+ -..++++|+..++++...
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 999887765543210 00 013566776555555432
Q ss_pred --------------------------------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007431 507 --------------------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 554 (604)
Q Consensus 507 --------------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d 554 (604)
+|.|..||+.+++.+...... .....+. +...+.+++.|+.|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~-----~~tagglvf~g~~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGV-----LATAGNLVFTGTGD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCC-----EEETTTEEEEECTT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccc-----eEeCCCEEEEECCC
Confidence 477888888887655443321 1111111 11246788889999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCcE-EEEEEecCCCCEEEEE
Q 007431 555 GKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVATC 594 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~tg 594 (604)
|.|+.||.++|+.+..++...+.+ .-+.|..++..+|++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999998654422 1255555344455543
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.61 E-value=2.2e-05 Score=79.07 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=144.9
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC-
Q 007431 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK- 379 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg- 379 (604)
.+.+++..|..+ .....++|.++ +.++++-..++.|..||. .+.....+. ....+..|++.++|+++++.....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~--~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITP--DGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECT--TCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECC--CCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 345666777543 56789999998 787777778899999987 233333332 345688999999999666554322
Q ss_pred -cEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEc---------CcCCce
Q 007431 380 -NIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD---------QHLGAV 446 (604)
Q Consensus 380 -~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~---------~h~~~V 446 (604)
.|..+|..+++........ ......+... ...++++...++.|+++|..++.. +.... ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~---~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLS---DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESS---SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccC---CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 4777787888765433322 2222223221 223444444689999999876532 21111 111234
Q ss_pred eEEEEeCCCCEE-EEEeCCCcEEEEECCC-CeE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 447 NTITFVDSNRRF-VTSSDDKSLRVWEFGI-PVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 447 ~~i~~sp~~~~l-~sgs~Dg~I~iwdl~~-~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+.| +++++.| ++-+..+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.+++.... ...
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-~~~ 246 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTI 246 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-EEE
Confidence 556 7777655 4555678899999864 211 111111 134678999999988777777889999987532 211
Q ss_pred ccccccCcccccceEEEEEc---CCCCEEEEEcCCC
Q 007431 523 KKKRFAGHIVAGYACQVNFS---PDGRFVMSGDGEG 555 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~s---pdg~~L~sgs~dG 555 (604)
...... .....++++|. |+++.|++.+..+
T Consensus 247 -~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 -IAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -Eeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 111111 12446789998 8988877766543
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=2.3e-05 Score=79.47 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=143.0
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC--------------------CCCceeeEEEcc
Q 007431 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--------------------HSKAVRDISFCN 367 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~--------------------h~~~V~~l~fsp 367 (604)
.+.+.-....+++|.++ +.+++++..++.|..|+. ..+. +..+.. ....+..|++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEG-PNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTT-CSSEEEECTTSEEEEECC-TTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECC-CCCc-eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 34444455678889998 887888888999999987 3332 222221 013478899997
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEee--CC---CcceEEEEcc-CCCCCcEEEEEEc-----------------CCe
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQVIRTFS--TG---KIPYVVKLNP-DDDKQNILLAGMS-----------------DKK 424 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~--~~---~~~~~~~~~~-~~~~~~~lvsg~~-----------------dg~ 424 (604)
++..|+.+...+.|..+|..++....... .+ ..+..+.+.+ ++ +++++... ++.
T Consensus 90 ~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC---EEEEECCcccccccccceehcccCCCce
Confidence 33356666555668888877654322111 11 2234455554 32 45554322 377
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCe--EEEEeecCCCCcccEEEEcCCCCEE
Q 007431 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWL 501 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg-s~Dg~I~iwdl~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l 501 (604)
|..||..+++...... .....+.|+++++++.|+.+ +..+.|.+|++.... ....+.. ... ...+++.++|++.
T Consensus 167 v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEE
T ss_pred EEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEE
Confidence 9999987776433222 23456789999999866555 566889999987421 1111111 122 6789999999876
Q ss_pred EEEEc----------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 502 AAQSL----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 502 ~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
++... .+.|..++.. +..+..+....+.. ...++.+++ .+++++++....+.|..+++.
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~-~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA-GEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT-TSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc-cccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 66554 4668888764 33332222111110 123444555 356555555567888888865
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.59 E-value=3.4e-05 Score=75.77 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcEEEEECCCCcEE
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVI 392 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I~vWD~~t~~~i 392 (604)
..+.+++|+++++.++++-...+.|..++. ........+.........+++++++..|+.+ ...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 357899999974566666667889999998 3333333333333567899999976555554 45678999998754432
Q ss_pred EEeeCC-CcceEEEEccCCCCCcEEEEEEc--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE-EEEeCCCcEE
Q 007431 393 RTFSTG-KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLR 468 (604)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l-~sgs~Dg~I~ 468 (604)
...... ..+..+.+.+.. +.++++... .+.|..+++................+.+++++++..| ++....+.|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 223222 456667777643 245555443 4789888886433222222334567899999976655 4555668899
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007431 469 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
++|+........+. . ......++.. +..|+++. ..+.|.+++..++..+..+..-.. .....+++.|++.
T Consensus 193 ~~~~~g~~~~~~~~-~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 193 CLNPAQPGRRKVLE-G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTEEEEEEEEE-C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEecCCCceEEEec-C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----cccceeeecCccC
Confidence 99987544333332 2 2233566654 45555555 458999999987765544332111 1233477777654
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00018 Score=82.24 Aligned_cols=279 Identities=8% Similarity=0.015 Sum_probs=164.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec--------------CCCCceeeEEEccCCCEEEEEECC
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--------------GHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~--------------~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
...|.+|...++ + .|..|+..+-|.+++. .......... -....|.++...++|. |..|+.+
T Consensus 257 ~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKD-N-KLWIATELNGIMILDL-QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTT-S-EEEEEESSSCEEEEET-TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred CceEEEEEECCC-C-CEEEEeCCCCeEEECC-CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 456999988776 4 4566666556888887 3332221111 1345789999988876 6667777
Q ss_pred CcEEEEECCCCcEEEEee-------CC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCCcee
Q 007431 379 KNIKYWDTETGQVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVN 447 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~~V~ 447 (604)
+-|..++..++....... .. ....+.++..+.. ..|.+|+.++-|..||..++...... ......|.
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT--SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC--CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 889999987665433211 00 1123444444432 34777887778999998765432211 12345788
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc
Q 007431 448 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 526 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 526 (604)
++...+++.+. .|+.++-|..++..++....... ......|.++...+++. |.+++. +-|.+|+..+.........
T Consensus 411 ~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 411 CSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp EEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECT
T ss_pred EEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccC
Confidence 88887777554 46666678889887665433221 11345688888887775 555555 5688898766432111110
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec----CCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007431 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.........+.++...++|.+.+.. ..+-|..||..+++.. .+.. ....|.++...+ ++.+ ..++..|.|..
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-~g~l-Wi~T~~Glv~~ 563 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS-KGQM-WLATGEGLVCF 563 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECT-TSCE-EEEETTEEEEE
T ss_pred cccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC-CCCE-EEEECCCceEE
Confidence 0011113567889899988765544 4344888987766543 3432 234688888876 4544 44444666466
Q ss_pred eC
Q 007431 603 WD 604 (604)
Q Consensus 603 WD 604 (604)
||
T Consensus 564 ~d 565 (781)
T 3v9f_A 564 PS 565 (781)
T ss_dssp SC
T ss_pred EC
Confidence 54
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00029 Score=72.44 Aligned_cols=247 Identities=7% Similarity=-0.055 Sum_probs=151.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcEEEEECCCCcE
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQV 391 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I~vWD~~t~~~ 391 (604)
....+|.+..+. +.++++ ....|+..++ ........+. ....+..++|++.+..|+.+ ...+.|..+++..+..
T Consensus 33 ~d~~~C~~~~~~-~~ll~~--~~~~I~~i~~-~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFA--NRIDIRQVLP-HRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSC-CEEEEE--CBSCEEEECT-TSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccC-ceeEee--cccceEEEeC-CCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 345567666654 434433 2345777777 3333333333 34457899999865555544 4578899999987664
Q ss_pred EEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE-eCC-CcEE
Q 007431 392 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDD-KSLR 468 (604)
Q Consensus 392 i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg-s~D-g~I~ 468 (604)
...+.. ...+..+++.+.. ++++++-...+.|.+.++........+.........|++.|.+..|+.+ ... +.|.
T Consensus 108 ~~~~~~~~~~p~glavd~~~--g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVH--DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEECSSCSCCCEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEeCCCCCccEEEEecCC--CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 444332 2345566666533 3667777778899999987655444444455677999999865555444 444 7788
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007431 469 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
.+++...... .+..........|+++|++..|..+. ..+.|..+++........ .... ......+++ ..+.+
T Consensus 186 r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~---~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 186 ASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV---ISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE---ECSS--CSSEEEEEE-ETTEE
T ss_pred EEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE---EeCC--CCCceEEEE-ECCEE
Confidence 8887654322 22222344568899998777666665 457899999865322111 1111 123445777 34555
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEec
Q 007431 548 VMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 548 L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
.++-...+.|..++..+|+.+..+..
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCCeEEEEEccCCCccEEecc
Confidence 56666788899998777776666653
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=7.6e-05 Score=79.16 Aligned_cols=240 Identities=10% Similarity=0.009 Sum_probs=142.9
Q ss_pred ceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC----eEEEEeCCCC
Q 007431 359 AVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTK 433 (604)
Q Consensus 359 ~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg----~I~iwD~~s~ 433 (604)
....|+++| ++..|+.+...+.|+.+|+.++...........+..+++.+.+. .++++...++ .+..++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEeCC-C
Confidence 457889997 45566666665889999998877666555556677788876542 3445444322 34444432 2
Q ss_pred ceE--EEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCe
Q 007431 434 EIT--QEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQ 509 (604)
Q Consensus 434 ~~~--~~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~ 509 (604)
... ..+. .......++++| ++.++++-..++.|..++............+.......++++|++++|+++. ..+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 211 2222 234467888999 6777777777889999999876653333333334567899999999655554 5688
Q ss_pred EEEEEcCCc-eeecccccccC------cc-------cccceE-EEEEc--------CCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 510 ILIYSTRER-FQLNKKKRFAG------HI-------VAGYAC-QVNFS--------PDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 510 I~iwd~~~~-~~~~~~~~~~~------~~-------~~~~v~-~l~~s--------pdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
|..++.... ..+.....+.+ .. .-.... .++.. ++|.+.++-...++|+.++ .+|.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 999886532 11100011110 00 001122 34443 4466666666778899998 5665
Q ss_pred eEEEEec----C----C---------CcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 567 VFRTLKC----H----E---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 567 ~~~~l~~----h----~---------~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.....-. . . .....+++.|+++.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 4433321 0 1 1478999998556566665566677764
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.37 E-value=0.00032 Score=73.12 Aligned_cols=255 Identities=7% Similarity=-0.047 Sum_probs=155.0
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~ 393 (604)
.-+|.+..+. + +|+.+ ....|+..++ ........+ .....+..++|++.+..|+ +-...+.|..+++..+....
T Consensus 78 ~~~C~~~~~~-~-~l~~~-~~~~I~~i~~-~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPE-P-VLLFA-NRIDIRQVLP-HRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSC-C-EEEEE-CBSCEEEECT-TSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCcccc-c-eeEee-cCccceeecc-CCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555553 3 33333 3356888887 333333333 3345578999998555555 44457889999998776544
Q ss_pred EeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CC-CcEEEE
Q 007431 394 TFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DD-KSLRVW 470 (604)
Q Consensus 394 ~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~D-g~I~iw 470 (604)
.+..+ ..+..+++.+. .++++++-...+.|.+.++........+.........|++.|.+..|+.+. .. +.|..+
T Consensus 153 ~~~~~~~~p~glavd~~--~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EECSSCSCCCCEEEETT--TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEeCCCCCccEEEEEeC--CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 43322 34455666653 336677777788999999876554444544556789999998766555544 44 678888
Q ss_pred ECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007431 471 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 549 (604)
Q Consensus 471 dl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~ 549 (604)
++......... .........|+++|++..|..+. ..+.|..+++........ +... ......+++ ..+.+++
T Consensus 231 ~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~---~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 231 SMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV---ISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp ETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE---ECSS--CSSEEEEEE-ETTEEEE
T ss_pred eCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE---EECC--CCCceEEEE-ECCEEEE
Confidence 87654333322 22344568899998777666655 457799998765322111 1111 123445777 3455666
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEE
Q 007431 550 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 550 sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
+-...+.|..++..+|+.+..+........++++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6667889999997777777666543333344433
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.37 E-value=0.0015 Score=65.95 Aligned_cols=228 Identities=6% Similarity=-0.081 Sum_probs=139.7
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcEEEEECCC----CcEEEEeeC-CCcceEEEEccC
Q 007431 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNPD 409 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I~vWD~~t----~~~i~~~~~-~~~~~~~~~~~~ 409 (604)
..|+..++ ........+. ....+..++|++.+..|+.+ ...+.|..+++.. ......+.. -..+..+++.+.
T Consensus 10 ~~I~~i~~-~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTL-DRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEET-TSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEEC-CCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 56888888 3444444443 34567899999866555544 4568999999876 222222322 234566666653
Q ss_pred CCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-C-CcEEEEECCCCeEEEEeecCCCC
Q 007431 410 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 410 ~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-D-g~I~iwdl~~~~~~~~~~~~~~~ 487 (604)
. ++++++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|..+++..... ..+......
T Consensus 88 ~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~ 164 (316)
T 1ijq_A 88 H--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQ 164 (316)
T ss_dssp T--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCS
T ss_pred C--CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCC
Confidence 3 356677677899999998765444444444567789999986665555543 3 6788888764433 223222345
Q ss_pred cccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007431 488 SMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~ 566 (604)
....+++++++..|..+. ..+.|..+++...... .+...... ......+++. .+.++++-...+.|..++..+++
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~--~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKR--LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTT--TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCc--cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 677999999877776665 4578999998653221 11111001 1234456774 35556666678899999987777
Q ss_pred eEEEEe
Q 007431 567 VFRTLK 572 (604)
Q Consensus 567 ~~~~l~ 572 (604)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 665554
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00016 Score=76.67 Aligned_cols=241 Identities=11% Similarity=0.148 Sum_probs=137.0
Q ss_pred CeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC-C----cEEEEECCC
Q 007431 315 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-K----NIKYWDTET 388 (604)
Q Consensus 315 ~V~~l~fsp-~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D-g----~I~vWD~~t 388 (604)
....|+++| + +..|+.+...+.|+.+|+ ..+. +..+.........|+|+++|++|+.+... + .+.+.+. .
T Consensus 138 ~P~~lavdp~~-~g~Lyv~d~~~~I~~id~-~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKN-HNHLYLVGEQHPTRLIDF-EKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTE-EEEEEEEEBTEEEEEEET-TTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCC-CCeEEEEeCCCcEEEEEC-CCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 467889998 4 344555555588899998 3433 34444455668899999999977666652 1 2333443 2
Q ss_pred CcEE--EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-cCCceeEEEEeCCCCE-EEEEeCC
Q 007431 389 GQVI--RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRR-FVTSSDD 464 (604)
Q Consensus 389 ~~~i--~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-h~~~V~~i~~sp~~~~-l~sgs~D 464 (604)
+... ..+.....+..+++.+. .+.++++-..++.|+.++...+........ .....+.|+|+|++++ +++-...
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~--~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPI--NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTT--TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CceeeeeeeccCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 3221 23333344556666663 336777777789999999987765332222 2245788999999994 5555567
Q ss_pred CcEEEEECCC--CeE--EEEeecC--C------------CCccc-EEEEc--------CCCCEEEEEEcCCeEEEEEcCC
Q 007431 465 KSLRVWEFGI--PVV--IKYISEP--H------------MHSMP-SISLH--------PNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 465 g~I~iwdl~~--~~~--~~~~~~~--~------------~~~v~-~l~~s--------p~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+.|..++... ... +..+... . ..... .+++. +++.++++-...+.|+.++..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~- 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ- 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-
Confidence 8899988653 211 1111110 0 11122 45543 335555554556788888743
Q ss_pred ceeeccccc----ccCcc--------cccceEEEEEcCC-CCEEEEEcCCCcEEEEeC
Q 007431 518 RFQLNKKKR----FAGHI--------VAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 518 ~~~~~~~~~----~~~~~--------~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~ 562 (604)
+........ ..+.. .-.....|+++|+ |.++++-..+.+|+.++.
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 322111100 11100 0124567999994 555555556778887765
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.33 E-value=1.2e-05 Score=90.11 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=148.4
Q ss_pred EEEEcCCCCCEEEEEECCC-----------cEEEEecCCCCe--eeEEec-CCCCceeeEEEccCCCEEEEEEC-CCcEE
Q 007431 318 AIRFFPKYGHLILSAGMDT-----------KVKIWDVVNSGK--CMRTYM-GHSKAVRDISFCNDGTKFLTASY-DKNIK 382 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs~Dg-----------~I~IWd~~~~~~--~~~~~~-~h~~~V~~l~fspdg~~L~s~s~-Dg~I~ 382 (604)
++++.|.++++++.|+.+. .+.+||.. +++ .+..+. .+.....++++..++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 4566673388888887653 57889983 332 222222 23333445788889999999985 45899
Q ss_pred EEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEE-cC-----CeEEEEeCCCCceEEEEcCc-----CCceeEE
Q 007431 383 YWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM-SD-----KKIVQWDMNTKEITQEYDQH-----LGAVNTI 449 (604)
Q Consensus 383 vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~-~d-----g~I~iwD~~s~~~~~~~~~h-----~~~V~~i 449 (604)
+||..+++....-. ...........++ +.+++.|+ .+ ..+.+||..+++.... ... ...-...
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~d---g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSD---GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQG 344 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTT---SCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTTG
T ss_pred EecCcCCceeECCCCCccccccceEEecC---CeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccccc
Confidence 99998876544322 2222233344433 36788887 34 5799999988754332 100 0000001
Q ss_pred EEeCCCCEEEEEeCCC---------cEEEEECCCCeEEEEeecCC--------CCcccEEEEc-CCCCEEEEEEcCC---
Q 007431 450 TFVDSNRRFVTSSDDK---------SLRVWEFGIPVVIKYISEPH--------MHSMPSISLH-PNTNWLAAQSLDN--- 508 (604)
Q Consensus 450 ~~sp~~~~l~sgs~Dg---------~I~iwdl~~~~~~~~~~~~~--------~~~v~~l~~s-p~g~~l~s~s~Dg--- 508 (604)
.+..++..++.++.+| .+..||..+........... ...-.++.+. .+++++++|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 1223455555555443 46788887765443322111 1112233333 3677888887542
Q ss_pred --------eEEEEEcCCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEcCC-----------CcEEEEeCCCCeeE
Q 007431 509 --------QILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----------GKCWFWDWKSCKVF 568 (604)
Q Consensus 509 --------~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----------G~I~iwd~~t~~~~ 568 (604)
.|.+||..+..-.... ..+.. .....+++..|+|++++.|+.+ ..+.+||..+.+-.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 5777776654321111 01111 1112345677899999998854 46899998776532
Q ss_pred E--EEecCCCcEEEEEEecCCCCEEEEEeC
Q 007431 569 R--TLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 569 ~--~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
. .+.........+.+.| ++.+++.||.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 2 1111111223344567 6778888885
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.00085 Score=76.63 Aligned_cols=274 Identities=14% Similarity=0.037 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-------CCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-------~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
..|.+|...++ +.+.+ |+.+ -+.+||. ..+....... .....|.++...++|. |..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNA-NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEET-TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECC-CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56889988777 55544 4545 5888887 3333322111 1245699999887775 555666567889998
Q ss_pred CCCcEEEEee-------C------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---------CcCC
Q 007431 387 ETGQVIRTFS-------T------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---------QHLG 444 (604)
Q Consensus 387 ~t~~~i~~~~-------~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~---------~h~~ 444 (604)
.++....... . -....+.++..+.. ..|.+|+.++-|..++..+........ ....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 8765432211 1 01123444444433 347788888889999987665332211 0235
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee--cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 445 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
.|.++...+++. |..|+.++-|.+|+..+........ ......|.++...+++. |.+|+.++-|..++..++....
T Consensus 364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE
T ss_pred ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE
Confidence 688888887775 4556655668899976543222110 12335688888887776 4456777778889876543221
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-----CCcEEEEEEecCCCCEEEEEeC-
Q 007431 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-----EGVCIGCEWHPLEQSKVATCGW- 596 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-----~~~V~~v~~sp~~~~~l~tgg~- 596 (604)
.... ......|.++...++|.+.+ |+. +-|..+|..+++........ ...|.++...+ ++. |..|+.
T Consensus 442 -~~~~--~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~ 514 (781)
T 3v9f_A 442 -IELE--KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFG 514 (781)
T ss_dssp -CCST--TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCC-EEEEESS
T ss_pred -eccC--CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCC-EEEEEcC
Confidence 1110 11235677888888886554 444 56999998876654433222 35688888877 454 444454
Q ss_pred CCcEEEeC
Q 007431 597 DGLIKYWD 604 (604)
Q Consensus 597 DG~I~vWD 604 (604)
.| |..||
T Consensus 515 ~G-l~~~~ 521 (781)
T 3v9f_A 515 GG-VGIYT 521 (781)
T ss_dssp SC-EEEEC
T ss_pred CC-EEEEe
Confidence 44 44443
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.29 E-value=0.0039 Score=63.15 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=147.0
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec----CCCCceeeEEEccCCCEEEEEECCCcEEEEECCC
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t 388 (604)
...+.+|.|.+. +..++ ++..|.|. ... +.++.-.... .....+.+|.|.+ +. ++.++..+.|.. ..+.
T Consensus 35 ~~~~~~v~~~~~-~~~~~-~G~~g~i~-~s~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWL-VGVNATLM-ETR-DGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSS-SCEEE-EETTTEEE-EES-STTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred CCcEEEEEECCC-CcEEE-EcCCCeEE-EeC-CCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence 346899998876 66666 45667553 222 3443322222 1245788999976 44 444555664443 3333
Q ss_pred CcEEEEeeCC----CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeCCCCEEEEEeC
Q 007431 389 GQVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 389 ~~~i~~~~~~----~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~-~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
|+.-...... .....+.+... +.++ +++.++.|+.- ...++.-. ....+...+..+.+.+++.+++++..
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGN---GSAE-MITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEET---TEEE-EEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT
T ss_pred CCCceECccccCCCCCeEEEEEECC---CCEE-EEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC
Confidence 4432222211 12233333322 2344 44456654332 22233222 22345567889999998877766654
Q ss_pred CCcEEE-EECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007431 464 DKSLRV-WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 464 Dg~I~i-wdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
|.|.. +|-. +.....+..+....+..+.+.+++..+ +++.+|.+++.+...+........ ........+..+.+.
T Consensus 183 -G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 183 -GSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYR 258 (327)
T ss_dssp -SSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBC-TTSSCCSCEEEEEES
T ss_pred -CcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccC-CcccCCcceEEEEec
Confidence 54443 3421 121122223455678889999988755 455678777664332332222111 000011246678899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 543 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+++.+++++. +|.| ++....|+.-..+.. +...+.++.|.+ + ..++.++.+|.|.-++
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEcCCceEEEEc
Confidence 8888777765 6666 455566665555542 234578888875 3 3577888899887654
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.29 E-value=0.0021 Score=67.24 Aligned_cols=245 Identities=6% Similarity=-0.080 Sum_probs=149.8
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcEEEEECCCC----cEEEEee-CCCc
Q 007431 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETG----QVIRTFS-TGKI 400 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I~vWD~~t~----~~i~~~~-~~~~ 400 (604)
.+|+.+. ...|+..++ ....... +......+..|+|++.+..|+.+ ...+.|..+++... .....+. ....
T Consensus 84 ~~ll~~~-~~~I~~i~l-~~~~~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTL-DRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECT-TSCSCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEcc-CCcceeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3444444 367888888 3333333 33445678899999865555555 45688999988752 2222222 2344
Q ss_pred ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCeEE
Q 007431 401 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVI 478 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~--Dg~I~iwdl~~~~~~ 478 (604)
+..+++.+.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++......
T Consensus 161 p~glavD~~~--~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 161 PDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cccEEEEecC--CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 5566666533 367777777899999999876655555545566899999997666655542 378988888654433
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007431 479 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 557 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I 557 (604)
..+ .........|++++++..|..+. ..+.|..+++......... .....-.....+++. .+.++++-...+.|
T Consensus 239 ~~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 239 SLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL---EDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE---ECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred EEE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE---eCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 332 22345678999998877777765 4578999998654322111 111011223356663 34455566677889
Q ss_pred EEEeCCCCeeEEEEecCCCcEEEE
Q 007431 558 WFWDWKSCKVFRTLKCHEGVCIGC 581 (604)
Q Consensus 558 ~iwd~~t~~~~~~l~~h~~~V~~v 581 (604)
..+|..+|+.+..+........++
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceE
Confidence 999988887776666443334444
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.00027 Score=74.91 Aligned_cols=239 Identities=8% Similarity=-0.035 Sum_probs=142.8
Q ss_pred ceeeEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC---C-eEEEEeCCC
Q 007431 359 AVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---K-KIVQWDMNT 432 (604)
Q Consensus 359 ~V~~l~fspd--g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d---g-~I~iwD~~s 432 (604)
....|+|+|+ +..|+.+...+.|+.+|..++...........+..+++.+++ .++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG---~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG---DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC---CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC---CEEEEcCCCCcccceEEEEECCC
Confidence 4578999984 445666655589999999888877666555567777777654 344444321 1 233343322
Q ss_pred Cce-EEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-ecCCCCcccEEEEcCCCCEEEEEE-cCC
Q 007431 433 KEI-TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQS-LDN 508 (604)
Q Consensus 433 ~~~-~~~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~s-~Dg 508 (604)
+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+ ..........++++|++++|+++. ..+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 11121 234567788999 6766666667788999998766552222 222222234699999999666555 467
Q ss_pred eEEEEEcCCc-eeecccccccCc------c-------cccceEEEEE---------cCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 509 QILIYSTRER-FQLNKKKRFAGH------I-------VAGYACQVNF---------SPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 509 ~I~iwd~~~~-~~~~~~~~~~~~------~-------~~~~v~~l~~---------spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
.|+.++.... ..+.....+.+. . .-.....+++ .++|.+.++-...++|+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8999886521 111000011110 0 0123456888 778877777777889999984 66
Q ss_pred eeEEEEecCC------------------CcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 566 KVFRTLKCHE------------------GVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 566 ~~~~~l~~h~------------------~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
... ++-+.. ....+|++.|.++.++++=.....|+..
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 443 333210 1367899995466666665566777765
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.00047 Score=73.10 Aligned_cols=243 Identities=9% Similarity=0.072 Sum_probs=137.1
Q ss_pred CeEEEEEcCC-CCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC-----cEEEEECCC
Q 007431 315 GVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTET 388 (604)
Q Consensus 315 ~V~~l~fsp~-~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg-----~I~vWD~~t 388 (604)
...+|+|.|+ ....|+.+...+.|+.++. ..+.. ..+.........|+|+++|+ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~-~~g~v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF-VNQYV-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET-TTTEE-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC-CCCEE-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 2344555544488999998 34444 34444556689999999999 54444322 133333222
Q ss_pred CcE-EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-cC-cCCceeEEEEeCCCCEE-EEEeCC
Q 007431 389 GQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQ-HLGAVNTITFVDSNRRF-VTSSDD 464 (604)
Q Consensus 389 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~-h~~~V~~i~~sp~~~~l-~sgs~D 464 (604)
+.. ...+.....+..+++.+. .+.++++-..++.|+.+|..++.....+ .. ....-..|+|+|++++| ++-...
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~--~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQ--NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTT--TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CeeccccccccCCCCEEEEeCC--CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 211 112222334445556552 3356666667889999999877763332 21 12233479999999854 555567
Q ss_pred CcEEEEECCC--CeE--EEEeec--C------------CCCcccEEEE---------cCCCCEEEEEEcCCeEEEEEcCC
Q 007431 465 KSLRVWEFGI--PVV--IKYISE--P------------HMHSMPSISL---------HPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 465 g~I~iwdl~~--~~~--~~~~~~--~------------~~~~v~~l~~---------sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+.|+.+++.. ... ...+.. . .......+++ .+++.++++-...+.|+.++..
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~- 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE- 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-
Confidence 8899988652 211 011110 0 1123456888 6677666666667889998853
Q ss_pred ceeecccccc----cCc--------ccccceEEEEEc-CCCCEEEEEcCCCcEEEEeCC
Q 007431 518 RFQLNKKKRF----AGH--------IVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 518 ~~~~~~~~~~----~~~--------~~~~~v~~l~~s-pdg~~L~sgs~dG~I~iwd~~ 563 (604)
+........- .+. ..-.....|+++ ++|.++++-..+++|+.++++
T Consensus 374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3221111000 000 001235678888 566666666667788877653
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.0016 Score=65.72 Aligned_cols=221 Identities=7% Similarity=-0.064 Sum_probs=136.1
Q ss_pred EEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC----CceEEEEcCcCCcee
Q 007431 372 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 447 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s----~~~~~~~~~h~~~V~ 447 (604)
|+.+. ...|+..|+.+......+.....+..+.+.+. .+.++++-...+.|..+++.. ......+........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 44433 35799999998877666665566667777654 336677777789999999876 222333333335668
Q ss_pred EEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeeccc
Q 007431 448 TITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKK 524 (604)
Q Consensus 448 ~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D--g~I~iwd~~~~~~~~~~ 524 (604)
.+++.+.+. ++++-...+.|.++++........+. ........++++|.+..|+.+... +.|..+++.........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 899986544 55555677899999987654333332 234567899999977766666543 68888887643221111
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec--CCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007431 525 KRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
... -.....+++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|.
T Consensus 160 ---~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 160 ---TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (316)
T ss_dssp ---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ---ECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEE
Confidence 111 23456799999877776555 567899999874333222222 22345677774 344555555556665
Q ss_pred Ee
Q 007431 602 YW 603 (604)
Q Consensus 602 vW 603 (604)
.+
T Consensus 233 ~~ 234 (316)
T 1ijq_A 233 SA 234 (316)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 276
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.19 E-value=0.0051 Score=61.38 Aligned_cols=252 Identities=12% Similarity=0.121 Sum_probs=158.8
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcE
Q 007431 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (604)
..|.|-|+.+.....+.-..-.. .-.+|..+.|+.-. ..++.|+|+++.+.+..+..........|. +. +.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s~--~~ 119 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL--NT 119 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEEC--SS--SE
T ss_pred CEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEec--CC--Ce
Confidence 47888899665555554433333 33588777777665 689999999999999998887655444444 33 23
Q ss_pred EEEEEcCCeEEEEeCCC-CceEEEEcCcC----CceeEEEEeCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeec
Q 007431 416 LLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSSD-------DKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s-~~~~~~~~~h~----~~V~~i~~sp~~~~l~sgs~-------Dg~I~iwdl~~~~~~~~~~~ 483 (604)
|...+ +..|+.|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|..+..... ..+
T Consensus 120 L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ie 196 (365)
T 2xzh_A 120 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIE 196 (365)
T ss_dssp EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EEC
T ss_pred EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc--eee
Confidence 33333 57899999974 45667776654 45666777888888765542 367889988765432 223
Q ss_pred CCCCcccEEEEcCC---CCEEEEEEcC---CeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007431 484 PHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 484 ~~~~~v~~l~~sp~---g~~l~s~s~D---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
+|......+.+.-+ ..+|+.+... +.++|.++... ......+ .+..........++..|+.-..++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 44333322222111 1233433332 57888887432 1111111 1222222344556888998889999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 551 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
-+.-|.|++||+.++.++..-+-...+|...+-+. ...-++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEE
Confidence 99999999999999999988887777776666655 33345555566655
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.0017 Score=66.50 Aligned_cols=230 Identities=10% Similarity=-0.011 Sum_probs=140.7
Q ss_pred eeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc
Q 007431 361 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 361 ~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~ 440 (604)
+|.+..++ .+|+.+ ....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444443 234333 335688888877666555555555666666653 33667777778999999998776555454
Q ss_pred CcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-CeEEEEEcCC
Q 007431 441 QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRE 517 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-D-g~I~iwd~~~ 517 (604)
........+++.+.+. ++++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 4445668899997554 4555566788999998755433322 234456789999997666655543 3 7788888765
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007431 518 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
....... ... -.....|+++|++..|+.++ ..+.|..+++........+........++++. ++.++++-..
T Consensus 192 ~~~~~~~---~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 192 SGRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp CSCEESC---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEE---ECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCC
Confidence 3222111 111 23456799998777666554 56789999986544333343334456777773 3444444444
Q ss_pred CCcEEE
Q 007431 597 DGLIKY 602 (604)
Q Consensus 597 DG~I~v 602 (604)
.+.|..
T Consensus 265 ~~~V~~ 270 (349)
T 3v64_C 265 TKSINS 270 (349)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 555544
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.11 E-value=0.0024 Score=64.62 Aligned_cols=229 Identities=9% Similarity=-0.017 Sum_probs=139.1
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCCcEE--EEeeCCCcceEEEEccCCC
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVI--RTFSTGKIPYVVKLNPDDD 411 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~~~i--~~~~~~~~~~~~~~~~~~~ 411 (604)
...|+..++.........+......+..|+|++.+..| ++-...+.|..+++..+... .....-..+..+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-- 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-- 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC--
Confidence 46788888843321122222222456789999854444 45455788999998766321 11122234556666653
Q ss_pred CCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCCcc
Q 007431 412 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSM 489 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~v 489 (604)
.++++++-...+.|.++++........+.........|++.|.+..|+.+. ..+.|...++....... +........
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~~~~~l~~P 168 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-IINSEIYWP 168 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-EECSSCSCE
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-EEECCCCCc
Confidence 336677777788999999876544444445556778999998766665554 25788888876433222 222234456
Q ss_pred cEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007431 490 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
..|+++|++..|..+. ..+.|..+++......... .+. ......+++.. +.++++-...+.|..++..+|+..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 8899999777666665 4578999998653221111 111 12344566653 345556667789999998787765
Q ss_pred EEEe
Q 007431 569 RTLK 572 (604)
Q Consensus 569 ~~l~ 572 (604)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.11 E-value=0.0011 Score=69.06 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=142.2
Q ss_pred eEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC
Q 007431 362 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 441 (604)
Q Consensus 362 ~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~ 441 (604)
|.+..+. .+|+.+ ....|+.+++..............+..+.+.+. .+.++++-...+.|+.+++........+..
T Consensus 81 C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCcccc-ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4443342 334433 346788899887766655555555666666653 336777777789999999987765555544
Q ss_pred cCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-CeEEEEEcCCc
Q 007431 442 HLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRER 518 (604)
Q Consensus 442 h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-D-g~I~iwd~~~~ 518 (604)
.......+++.+.+. ++++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++...
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 445667899997554 4455556778888888654433322 234456789999997776666554 3 67888887653
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007431 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
...... ... -.....|+++|++..|+.++ ..+.|..+++........+........++++. ++.++++-...
T Consensus 236 ~~~~~~---~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~ 308 (386)
T 3v65_B 236 GRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHT 308 (386)
T ss_dssp SCEEEE---CSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTT
T ss_pred CcEEEE---ECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCC
Confidence 222111 111 13456799998766666554 56789999986544433344334456777773 34455555555
Q ss_pred CcEEEe
Q 007431 598 GLIKYW 603 (604)
Q Consensus 598 G~I~vW 603 (604)
+.|..+
T Consensus 309 ~~V~~~ 314 (386)
T 3v65_B 309 KSINSA 314 (386)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 566544
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00077 Score=72.10 Aligned_cols=249 Identities=8% Similarity=0.067 Sum_probs=141.5
Q ss_pred eEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCeeeEEecC---CCCceeeEEE-------ccCCCEEEEEECCC-----
Q 007431 316 VSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISF-------CNDGTKFLTASYDK----- 379 (604)
Q Consensus 316 V~~l~fsp-~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~---h~~~V~~l~f-------spdg~~L~s~s~Dg----- 379 (604)
...|+|.| +.++++++....+.|++.|+ ..+.....+.. .......|+| +++|++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 56789998 43555555555577888887 34444433322 1235889999 99999777776654
Q ss_pred --cEEEEECCC-CcEE-----EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-------CCce---------
Q 007431 380 --NIKYWDTET-GQVI-----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEI--------- 435 (604)
Q Consensus 380 --~I~vWD~~t-~~~i-----~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-------s~~~--------- 435 (604)
.|.+.+... +... ..+.....+..+++.+. .+.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT--TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCC--CCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 22222233445566553 44778888888999999987 5543
Q ss_pred --EEE-Ec-CcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECC--CCeEE--EEeec--C------------CCCccc-E
Q 007431 436 --TQE-YD-QHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFG--IPVVI--KYISE--P------------HMHSMP-S 491 (604)
Q Consensus 436 --~~~-~~-~h~~~V~~i~~sp~~~~-l~sgs~Dg~I~iwdl~--~~~~~--~~~~~--~------------~~~~v~-~ 491 (604)
... +. ........|+|+|++++ +++-+....|+.+++. ..... ..+.. . ...... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 21 22344679999999995 4555567788886653 32210 11110 0 011223 4
Q ss_pred EEEc-------CCCCEEEEEEcCCeEEEEEcCCceeecccccc-----------cCcc--------cccceEEEEEcCC-
Q 007431 492 ISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-----------AGHI--------VAGYACQVNFSPD- 544 (604)
Q Consensus 492 l~~s-------p~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----------~~~~--------~~~~v~~l~~spd- 544 (604)
++.. +++.++++-...+.|+.++. ++. +..+... .+.. .-.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4554 45666666667788999884 332 2111100 0100 0123567888886
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEE
Q 007431 545 GRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 545 g~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
|.++++=..+.+|+.+++....+..
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcccc
Confidence 6666666677888888876655443
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.00014 Score=81.58 Aligned_cols=237 Identities=12% Similarity=0.120 Sum_probs=133.2
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCeeeEEecCCCCc-eeeEEEccCCCEEEEEE-CC-----CcEEE
Q 007431 312 HTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTAS-YD-----KNIKY 383 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~-Dg~I~IWd~~~~~~~~~~~~~h~~~-V~~l~fspdg~~L~s~s-~D-----g~I~v 383 (604)
+.....++++.++ +.+++.|+. +..+.+||.. +..-...-..+... -.+++..++|++++.|+ .+ ..+.+
T Consensus 241 ~~~~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~-t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 241 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSS-SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGG-GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CCCccccccCCCC-CCEEEeCCCCCCceEEecCc-CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 3333445677777 889999884 5689999983 33322211112222 23455667899999998 44 57999
Q ss_pred EECCCCcEEEEeeCCCcceEEE--EccCCCCCcEEEEEEcC---------CeEEEEeCCCCceEEEEcCcCC--------
Q 007431 384 WDTETGQVIRTFSTGKIPYVVK--LNPDDDKQNILLAGMSD---------KKIVQWDMNTKEITQEYDQHLG-------- 444 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~--~~~~~~~~~~lvsg~~d---------g~I~iwD~~s~~~~~~~~~h~~-------- 444 (604)
||..+++....-.....+.... ......+..+++.|+.+ ..+..||..+.........+..
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 9998876544311000000000 00000122455556544 4567888887764433322211
Q ss_pred -ceeEEEEeC-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEe--ecCCCCcccEEEEcCCCCEEEEEEcC--
Q 007431 445 -AVNTITFVD-SNRRFVTSSDDK-----------SLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLD-- 507 (604)
Q Consensus 445 -~V~~i~~sp-~~~~l~sgs~Dg-----------~I~iwdl~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~s~s~D-- 507 (604)
.-.++.+.. +++++++|+.++ .|.+||..+..-.... ..+......++++.|+++++++|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 223444443 677778877432 5778887776554433 22233334566778899999999865
Q ss_pred ---------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007431 508 ---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 508 ---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
..+.+||..+..-. ........ ........+.|+|++++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~-~~~~~~~~--R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFY-KQNPNSIV--RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEE-ECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCcee-ecCCCCCc--cccccHhhcCCCcEEEecCCC
Confidence 56899998764321 11111111 122233556799999999985
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.00062 Score=77.51 Aligned_cols=197 Identities=11% Similarity=0.104 Sum_probs=107.5
Q ss_pred CCCC-CeEEEEEc-CCCCCEEEE-EECCC----cEEEEecCCCC-eeeE-EecCCCCceeeEEEccCCCEEEEEECC---
Q 007431 311 GHTK-GVSAIRFF-PKYGHLILS-AGMDT----KVKIWDVVNSG-KCMR-TYMGHSKAVRDISFCNDGTKFLTASYD--- 378 (604)
Q Consensus 311 gH~~-~V~~l~fs-p~~g~~L~s-gs~Dg----~I~IWd~~~~~-~~~~-~~~~h~~~V~~l~fspdg~~L~s~s~D--- 378 (604)
+|.- .+...+|| |+ |++|+- .+.+| +|+++|+ .++ +.+. .+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl-~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRI-SDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEET-TCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEEC-CCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 4443 68889999 99 776664 44343 4999999 455 4221 111 124578999999988877765
Q ss_pred --CcEEEEECCCCc--EEEEeeCCCc--ceEEEEccCCCCCcEEEEEEc--CCeEEEEeCCCC--ce--EEEEcCcCCce
Q 007431 379 --KNIKYWDTETGQ--VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTK--EI--TQEYDQHLGAV 446 (604)
Q Consensus 379 --g~I~vWD~~t~~--~i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~s~--~~--~~~~~~h~~~V 446 (604)
..|.++++.++. ....+..... .....+++++ ..++++... ...|+++|+.++ +. ........+..
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 368888988764 2233332222 2334555543 244444432 457888999875 23 22223344555
Q ss_pred eEEEEeCCCCEEEEEeCC----CcEEEEECCCC-eEEE-EeecCCCCcccEEEEcCCCCEEEEEEcCCeEE--EEEc
Q 007431 447 NTITFVDSNRRFVTSSDD----KSLRVWEFGIP-VVIK-YISEPHMHSMPSISLHPNTNWLAAQSLDNQIL--IYST 515 (604)
Q Consensus 447 ~~i~~sp~~~~l~sgs~D----g~I~iwdl~~~-~~~~-~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~--iwd~ 515 (604)
.++.|+..+.+++.+..+ ..|..+++..+ .... .+.......+..+.+. .+.++++...++... ++++
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 666655444444444443 25777777642 2111 2221112234455554 234455566677644 4554
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.02 E-value=0.0071 Score=68.76 Aligned_cols=229 Identities=6% Similarity=-0.057 Sum_probs=140.9
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCC----cEEEEee-CCCcceEEEEcc
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETG----QVIRTFS-TGKIPYVVKLNP 408 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~----~~i~~~~-~~~~~~~~~~~~ 408 (604)
...|+..++ ....... +......+..|+|.+....| ++-...+.|+.+++... .....+. ....+..+++.+
T Consensus 403 ~~~Ir~i~l-~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 403 RHEVRKMTL-DRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp BSSEEEECT-TSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccceeEeec-cCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 456888887 3333333 33345667899999855544 45455678999988753 2222332 334556677776
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CC-CcEEEEECCCCeEEEEeecCCC
Q 007431 409 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DD-KSLRVWEFGIPVVIKYISEPHM 486 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~D-g~I~iwdl~~~~~~~~~~~~~~ 486 (604)
.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+. .. +.|.+.++........+ ....
T Consensus 481 ~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-~~~l 557 (791)
T 3m0c_C 481 IH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TENI 557 (791)
T ss_dssp TT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-CSSC
T ss_pred cC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-eCCC
Confidence 44 36777777889999999986655445545566789999999766665554 33 67888888655443333 3344
Q ss_pred CcccEEEEcCCCCEEEEEEc-CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 487 HSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
.....|++++.+..|+.+.. .+.|..+++......... .....-.....|++.. +.++++-...+.|...+..+|
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~---~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL---EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---ECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe---cCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 56789999987777766654 467999998654332211 1110012233455533 234444456788998988888
Q ss_pred eeEEEEe
Q 007431 566 KVFRTLK 572 (604)
Q Consensus 566 ~~~~~l~ 572 (604)
+.+..+.
T Consensus 634 ~~~~~l~ 640 (791)
T 3m0c_C 634 SDVNLLA 640 (791)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 7666664
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0034 Score=65.59 Aligned_cols=222 Identities=7% Similarity=-0.068 Sum_probs=140.0
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC----CceEEEEcCcCCce
Q 007431 371 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAV 446 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s----~~~~~~~~~h~~~V 446 (604)
+|+.+. ...|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++.. ......+.......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 47899999988776666655566666777664 336667767788999999875 23334444455677
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecc
Q 007431 447 NTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNK 523 (604)
Q Consensus 447 ~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~--Dg~I~iwd~~~~~~~~~ 523 (604)
..|++.+. ++++++-...+.|.+.++........+. ........|+++|.+.+|+.... .+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 89999974 5555566667889999987665444443 24455789999997777766653 36788888765432211
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec--CCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 524 KKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
. ... -.....|++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|
T Consensus 241 ~---~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V 313 (400)
T 3p5b_L 241 V---TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 313 (400)
T ss_dssp E---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred E---ECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence 1 111 13456799998877776665 467899999865444333332 22345677763 34455555555666
Q ss_pred EEe
Q 007431 601 KYW 603 (604)
Q Consensus 601 ~vW 603 (604)
..+
T Consensus 314 ~~~ 316 (400)
T 3p5b_L 314 FSA 316 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.00 E-value=0.0071 Score=58.89 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=128.2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007431 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
+.+.|-.+.+..|+|.|+++.++++...++.|...|. .++.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT--NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET--TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC--CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3556666789999999985566677888888988898 377777763 2225577889988887667665678899998
Q ss_pred CCCCcE---EEEeeCC-------CcceEEEEccCCCCCcEEEEEEcCC-eEEEEeC-CCCceEEEEc-------CcCCce
Q 007431 386 TETGQV---IRTFSTG-------KIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDM-NTKEITQEYD-------QHLGAV 446 (604)
Q Consensus 386 ~~t~~~---i~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~-~s~~~~~~~~-------~h~~~V 446 (604)
+..... +...... .....+++.+.. +.++++.-.+. .|+.|+- .....+..+. .+...+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 865442 2333211 112567777653 24555444444 5666651 1111122221 134467
Q ss_pred eEEEEeCCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCC--------CCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007431 447 NTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPH--------MHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 447 ~~i~~sp~~~~l-~sgs~Dg~I~iwdl~~~~~~~~~~~~~--------~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
.+++++|....| +.....+.|.++|.... .+..+.... ....-.|++.++|++ .+.+.-+.+++|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 899999976554 55555677888987644 555444321 124578999999984 44477787777643
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.99 E-value=0.0043 Score=60.44 Aligned_cols=205 Identities=10% Similarity=0.128 Sum_probs=127.3
Q ss_pred EecCCCCceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007431 352 TYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 352 ~~~~h~~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
.+.+-...+..++|+|++..|+ +...++.|...|+. ++.++.+... .....+++... +.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEE
Confidence 4556667899999999766555 56778899999998 8888888654 34445555532 2455555567889999
Q ss_pred eCCCCce---EEEEc------CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---CeEEEEe------ecCCCCccc
Q 007431 429 DMNTKEI---TQEYD------QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYI------SEPHMHSMP 490 (604)
Q Consensus 429 D~~s~~~---~~~~~------~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~---~~~~~~~------~~~~~~~v~ 490 (604)
++..... +.... ......-.|+++|.++.|+++.......+|.+.. ...+..+ .......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765432 23332 1234468999999998888777666656666531 1111111 112345678
Q ss_pred EEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCcc----cccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007431 491 SISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 491 ~l~~sp~g~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
+++++|....|++. .....|.++|.... .+.......+.. .-...-.|+|.++|++.++ +.-..++.+.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999976555544 45577888887654 222222221210 0123457999999985555 56666666653
No 287
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.98 E-value=0.023 Score=58.89 Aligned_cols=252 Identities=11% Similarity=0.123 Sum_probs=161.8
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcE
Q 007431 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (604)
..|.|-|+.+.....+.-..-. +.-.+|..+.|+.-. ..++.|+|+++.+.+..+..........|.... .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~----~ 118 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN----T 118 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----E
T ss_pred CeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC----e
Confidence 4788889865555544433222 344677777666655 689999999999999999887776666665532 2
Q ss_pred EEEEEcCCeEEEEeCCC-CceEEEEcCcC----CceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeec
Q 007431 416 LLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s-~~~~~~~~~h~----~~V~~i~~sp~~~~l~sgs-------~Dg~I~iwdl~~~~~~~~~~~ 483 (604)
|... .+..|+.|++.. ..++..+..|. ..|..-..+++.++++..+ -.|.+.+|..+..... ..+
T Consensus 119 l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ie 195 (494)
T 1bpo_A 119 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIE 195 (494)
T ss_dssp EEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EEC
T ss_pred EEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hhe
Confidence 3333 467899999964 35667776654 4566777788888877543 2467889988765432 223
Q ss_pred CCCCcccEEEEcCC---CCEEEEEEcC---CeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007431 484 PHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 484 ~~~~~v~~l~~sp~---g~~l~s~s~D---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
+|......+.+..+ ...|+.+... +.++|.++... ......+ .+..........++..|+.-..++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 45444333333211 1234444432 78999988542 1110000 1122222344556889999899999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 551 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
-+.-|.|++||+.++.++..-+-...+|...+-+. ...-++.....|.|
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 324 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceE
Confidence 99999999999999999988887777776666665 33345555566655
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.79 E-value=0.0032 Score=63.64 Aligned_cols=216 Identities=9% Similarity=-0.021 Sum_probs=127.9
Q ss_pred CCcEEEEECCCCc--EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCC
Q 007431 378 DKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 378 Dg~I~vWD~~t~~--~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~~h~~~V~~i~~sp~ 454 (604)
...|+.+++.... ....+.....+..+.+.+ ..+.++++-...+.|..+++..+.. ...+.........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4678889988763 222222222334445554 3346777777788999999876632 1222223355678999874
Q ss_pred C-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecccccccCcc
Q 007431 455 N-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHI 531 (604)
Q Consensus 455 ~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~ 531 (604)
+ +++++-...+.|.++++....... +..........++++|.+..|+.+.. .+.|..+++......... ...
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~-l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~- 164 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---NSE- 164 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEE-EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---CSS-
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---ECC-
Confidence 4 455555667889999987543322 22234456789999997777766663 578888887643221111 111
Q ss_pred cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 532 VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 532 ~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
-.....|++++++..|+.++ ..+.|..+|+........+........++++.. +.++++-...+.|..+
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 13456799999777666554 567899999864333323332334556777643 3445554445555544
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.79 E-value=0.031 Score=61.83 Aligned_cols=281 Identities=9% Similarity=-0.015 Sum_probs=150.5
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEEC--CCcEEEEECCCCc
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 390 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~--Dg~I~vWD~~t~~ 390 (604)
.....|++.+.++++.++-...+.|.+.++ .+...+.+. ..-.....|++.|.+..|+.+.. .+.|...++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 568899999975666677677899999998 343333332 44556789999997656655553 3567666766433
Q ss_pred EEEEe-eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007431 391 VIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 391 ~i~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
..... .....+..+++.+.. +.++++-...+.|..+|+..........+.......|++..+ ..+++-...+.|..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred eEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 32222 233456667776643 366666667788999998754332222222233356677554 45555556778888
Q ss_pred EECCCCeEEEEeecC----------CC--------------CcccEEEE-----------cCCC--------------CE
Q 007431 470 WEFGIPVVIKYISEP----------HM--------------HSMPSISL-----------HPNT--------------NW 500 (604)
Q Consensus 470 wdl~~~~~~~~~~~~----------~~--------------~~v~~l~~-----------sp~g--------------~~ 500 (604)
.|..++.....+... |. +....+|+ .|.| ..
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 887655433222110 00 00111222 1111 11
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCcEE
Q 007431 501 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCI 579 (604)
Q Consensus 501 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg-s~dG~I~iwd~~t~~~~~~l~~h~~~V~ 579 (604)
++.-+..+.|+..++...........+.+ -..+..++|.+.+..|+.+ ...+.|+.++.........+...-....
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~ 395 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD 395 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEEcccceEEEecCCCccceeEEeccc---cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence 12222344555555543321110111111 1235679999865555544 4678899999876444333333334456
Q ss_pred EEEEecCCCCEEEEEeCCCcEEE
Q 007431 580 GCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 580 ~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
++++...++.+.++-+..+.|.+
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEecccCcEEEEeCCCCcEEE
Confidence 77777644545555444555544
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.79 E-value=0.0033 Score=63.78 Aligned_cols=196 Identities=9% Similarity=0.180 Sum_probs=123.4
Q ss_pred EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC----C---EEE-EEeC--CCcEEEEEC
Q 007431 403 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN----R---RFV-TSSD--DKSLRVWEF 472 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~----~---~l~-sgs~--Dg~I~iwdl 472 (604)
.+-+++......+++.....+.|.+||+ +|+.++.+.. +.++.+.+-|.- + +++ +... +++|++|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 3444455445567777788899999999 8988888853 678888877632 2 223 3333 578999987
Q ss_pred C-CCeEEEEeec---C--C-CCcccEEEE--cCC-CC-EEEEEEcCCeEEEEEcCC---c-eeecccccccCcccccceE
Q 007431 473 G-IPVVIKYISE---P--H-MHSMPSISL--HPN-TN-WLAAQSLDNQILIYSTRE---R-FQLNKKKRFAGHIVAGYAC 537 (604)
Q Consensus 473 ~-~~~~~~~~~~---~--~-~~~v~~l~~--sp~-g~-~l~s~s~Dg~I~iwd~~~---~-~~~~~~~~~~~~~~~~~v~ 537 (604)
. ....+..+.. + . ...+..+|+ +|. +. ++++...+|.+..|++.. + ......+.+.. .+.+-
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~E 183 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTE 183 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEE
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcc
Confidence 3 2223444422 1 1 156677888 674 44 688888899999998842 1 11112222222 24456
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeeEEEEe-cC-CCcEEEEEEe--cCCCCEEEEEe-CCCcEEEeC
Q 007431 538 QVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLK-CH-EGVCIGCEWH--PLEQSKVATCG-WDGLIKYWD 604 (604)
Q Consensus 538 ~l~~spdg~~L~sgs~dG~I~iwd~~-----t~~~~~~l~-~h-~~~V~~v~~s--p~~~~~l~tgg-~DG~I~vWD 604 (604)
.+...+....|+.+-.+..|+.++.. +++.+..+. ++ ...+-.|++- +++..+|++.+ .+.++.|||
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 78888888999999998778888855 355665543 22 2357888875 32223444444 566777775
No 291
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.78 E-value=0.016 Score=68.64 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=127.6
Q ss_pred cEEEEECCCCcEEEEeeCCCcc--eEEEE-ccCCCCCcEEEEEE----------cCCeEEEEeCCCCceEEEE-cCcCCc
Q 007431 380 NIKYWDTETGQVIRTFSTGKIP--YVVKL-NPDDDKQNILLAGM----------SDKKIVQWDMNTKEITQEY-DQHLGA 445 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~--~~~~~-~~~~~~~~~lvsg~----------~dg~I~iwD~~s~~~~~~~-~~h~~~ 445 (604)
.|++.|..+.+.+..+.....- .+++. ........++++|+ ..|.|++|++..+++.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 4778888888887776654433 33332 22333457888887 3588999998754432222 234688
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 446 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
|++++-. +| +|++|- ...|++|++...+.+..-. .....+..+.+...++++++|..-..|.++..+.. ...+.
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~ 961 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTEC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFE 961 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEe-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEE
Confidence 9988866 34 555544 4789999998765333111 11112444444446788999988877777654321 11122
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--------CeeEEEEecC-CCcEEEEE---EecCC------
Q 007431 526 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--------CKVFRTLKCH-EGVCIGCE---WHPLE------ 587 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t--------~~~~~~l~~h-~~~V~~v~---~sp~~------ 587 (604)
.+.......+++++.|-.+ ..++.++.+|.|.+..... .++...-.-| ...|+++. +.+..
T Consensus 962 ~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~ 1040 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST 1040 (1158)
T ss_dssp EEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred EEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccc
Confidence 2222333566777777655 4778899999999997643 2232222333 33566664 23311
Q ss_pred --CCEEEEEeCCCcEEE
Q 007431 588 --QSKVATCGWDGLIKY 602 (604)
Q Consensus 588 --~~~l~tgg~DG~I~v 602 (604)
...++-++.+|.|-+
T Consensus 1041 ~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp CEEEEEEEEETTSCEEE
T ss_pred cccceEEEEecCCEEEE
Confidence 235788888999865
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.0053 Score=65.63 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=135.9
Q ss_pred eeeEEEcc-CCCEEEEE-ECCCcEEEEECCCCcEEEEeeCCC----cceEEEE-------ccCCCCCcEEEEEEcCC---
Q 007431 360 VRDISFCN-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL-------NPDDDKQNILLAGMSDK--- 423 (604)
Q Consensus 360 V~~l~fsp-dg~~L~s~-s~Dg~I~vWD~~t~~~i~~~~~~~----~~~~~~~-------~~~~~~~~~lvsg~~dg--- 423 (604)
...|+|+| +...|+.+ ...+.|++.|+.++.+......+. .+..+++ .+.+. .++++...++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCCcc
Confidence 56889998 34444444 444679999999887766554432 3566667 55432 3444444432
Q ss_pred ---eEEEEeCCC-CceE-----EEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECC-------CCeE---------
Q 007431 424 ---KIVQWDMNT-KEIT-----QEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFG-------IPVV--------- 477 (604)
Q Consensus 424 ---~I~iwD~~s-~~~~-----~~~~~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~-------~~~~--------- 477 (604)
.|.+++... +... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 377776443 2221 22221 224467888994 5556667778889999987 4432
Q ss_pred --EEE-eecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCce-eecccccc------cCcc-------cccceE-E
Q 007431 478 --IKY-ISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERF-QLNKKKRF------AGHI-------VAGYAC-Q 538 (604)
Q Consensus 478 --~~~-~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~-~~~~~~~~------~~~~-------~~~~v~-~ 538 (604)
... ...+.......|+|+|++++|.++. ..+.|+.++..... .+.....+ .+.. .-.... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 2223344567899999999655554 56788887654321 11000011 1100 001122 3
Q ss_pred EEEc-------CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC---------------C---------CcEEEEEEecCC
Q 007431 539 VNFS-------PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH---------------E---------GVCIGCEWHPLE 587 (604)
Q Consensus 539 l~~s-------pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h---------------~---------~~V~~v~~sp~~ 587 (604)
++.. ++|.++++-..+.+|+.++ .+|. +.++-+. . ....+|++.+++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4454 5677777777788999998 5664 4444322 0 136789999843
Q ss_pred CCEEEEEeCCCcEEEe
Q 007431 588 QSKVATCGWDGLIKYW 603 (604)
Q Consensus 588 ~~~l~tgg~DG~I~vW 603 (604)
+.++++=.....|+.+
T Consensus 456 g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEE
Confidence 5555555556677765
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.75 E-value=0.063 Score=63.65 Aligned_cols=231 Identities=11% Similarity=0.128 Sum_probs=123.0
Q ss_pred eeEEecCC-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE-ecCCCCceeeEEEccC------CCEEEEEE
Q 007431 305 LVHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCND------GTKFLTAS 376 (604)
Q Consensus 305 ~i~tl~gH-~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~-~~~h~~~V~~l~fspd------g~~L~s~s 376 (604)
.+..|..- ...|.+.+.+ +..++.++ .+.+.++.+. .+..... -..-...|.|+++.+. +++++.|.
T Consensus 504 ~~~~w~~p~~~~I~~As~n---~~~vvva~-g~~l~~fel~-~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~ 578 (1158)
T 3ei3_A 504 LVSEWKEPQAKNISVASCN---SSQVVVAV-GRALYYLQIH-PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL 578 (1158)
T ss_dssp EEEEECCTTCCCCCEEEEC---SSEEEEEE-TTEEEEEEEE-TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeC---CCEEEEEE-CCEEEEEEee-CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence 34455432 2346666554 23555554 5788888874 3322111 1123567999999863 46899999
Q ss_pred C-CCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeC--CCCceEEE---EcCcCCceeE
Q 007431 377 Y-DKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE---YDQHLGAVNT 448 (604)
Q Consensus 377 ~-Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~--~s~~~~~~---~~~h~~~V~~ 448 (604)
. |++|+|+++.+.+.+.....+ ..+..+.+...+ ...+|.+|..||.+..+.+ .++.+... +-+ ..++.-
T Consensus 579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L 656 (1158)
T 3ei3_A 579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE-SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVL 656 (1158)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET-TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEE
T ss_pred CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC-CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEE
Confidence 7 999999999988877665543 244444444332 3367899999999866544 45554432 222 334544
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEE-EEcCC--CCEEEEEEcCCeEEEEEcCCceeecccc
Q 007431 449 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 449 i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l-~~sp~--g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
..+...+..-+.+..+....+|.-+..-....+ ....+..+ .|+.. ..-++.. .++.++|..+........ +
T Consensus 657 ~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~-~ 731 (1158)
T 3ei3_A 657 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHI-R 731 (1158)
T ss_dssp EEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEE-E
T ss_pred EEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeE-E
Confidence 444444443333333455555554332222222 12233333 34321 2334433 356688888754322211 1
Q ss_pred cccCcccccceEEEEEcCCCCEEEE
Q 007431 526 RFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
.+ .....+..++++|..+.++.
T Consensus 732 ~i---pL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 732 TV---PLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp EE---ECSSEEEEEEEEGGGTEEEE
T ss_pred EE---eCCCCceEEEEcCCCCEEEE
Confidence 11 11234556777776665443
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.75 E-value=0.0073 Score=61.26 Aligned_cols=185 Identities=12% Similarity=0.286 Sum_probs=122.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc----CCCE--E-EEEE-C--CCcEEEEEC--CCCcEEE
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN----DGTK--F-LTAS-Y--DKNIKYWDT--ETGQVIR 393 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp----dg~~--L-~s~s-~--Dg~I~vWD~--~t~~~i~ 393 (604)
..+++.....+-+.+||+ .++.+..+.. +.++.+..-| .|+. | ++.. . +++|++|++ .++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 456666677788999999 7888887754 5566666655 2322 2 3333 3 578999977 3443 44
Q ss_pred Eee-------CC-CcceEEEEccCCC-CCcEEEEEEcCCeEEEEeCC-------CCceEEEEcCcCCceeEEEEeCCCCE
Q 007431 394 TFS-------TG-KIPYVVKLNPDDD-KQNILLAGMSDKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 394 ~~~-------~~-~~~~~~~~~~~~~-~~~~lvsg~~dg~I~iwD~~-------s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
.+. .. ..++-+|+..+.. +..++++...+|.+.+|++. +.++++++.. .+.+-.+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 442 11 4455566633332 22468888888999999882 3356677753 467888899988889
Q ss_pred EEEEeCCCcEEEEECC-----CCeEEEEeecCCC-CcccEEEE--cCCCC-EEEEEE-cCCeEEEEEcC
Q 007431 458 FVTSSDDKSLRVWEFG-----IPVVIKYISEPHM-HSMPSISL--HPNTN-WLAAQS-LDNQILIYSTR 516 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~-----~~~~~~~~~~~~~-~~v~~l~~--sp~g~-~l~s~s-~Dg~I~iwd~~ 516 (604)
|+.+-.+.-|..++.+ +...+..+..++. ..+..|++ .++++ +|++++ .++...+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777677754 3445555432322 36788888 45555 677766 56799999986
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.74 E-value=0.033 Score=61.72 Aligned_cols=227 Identities=7% Similarity=-0.044 Sum_probs=142.7
Q ss_pred CCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCC
Q 007431 334 MDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDD 410 (604)
Q Consensus 334 ~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~ 410 (604)
....|+..++. .......+. ..-..+..|+|++.+..|+ +-..++.|..+++........+..+ ..+..+++.+..
T Consensus 13 ~~~~I~~i~l~-~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLE-TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESS-CTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECC-CCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 45678888884 332222222 2334678999999655555 4455788999998766544444433 356667776643
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCCc
Q 007431 411 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHS 488 (604)
Q Consensus 411 ~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~ 488 (604)
++++++-...+.|.+.++........+.........|++.|....|+.+. ..+.|...++......... .....
T Consensus 92 --~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--~~~~~ 167 (628)
T 4a0p_A 92 --KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--PNVGR 167 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSCSS
T ss_pred --CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--CCCCC
Confidence 36777777788999999876544333434556678999998655655554 2567888887654433222 24456
Q ss_pred ccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007431 489 MPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 489 v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~ 567 (604)
...|+++++++.|..+. ..+.|..+++...... . +... ......+++.. +.++++-...+.|...|..+++.
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v---~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-V---IADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E---EEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCceE-E---eecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 78999999877666665 4578999998664331 1 1111 12234566654 44444555678899999877765
Q ss_pred EEEEe
Q 007431 568 FRTLK 572 (604)
Q Consensus 568 ~~~l~ 572 (604)
...+.
T Consensus 241 ~~~l~ 245 (628)
T 4a0p_A 241 RTIIQ 245 (628)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55554
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.012 Score=59.09 Aligned_cols=204 Identities=10% Similarity=0.065 Sum_probs=122.8
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE-EecC----C--CCceeeEEE---ccCCCEEEEEEC---
Q 007431 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMG----H--SKAVRDISF---CNDGTKFLTASY--- 377 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~-~~~~----h--~~~V~~l~f---spdg~~L~s~s~--- 377 (604)
+...---+++|.+..+.++++.-..++|..|+.. .+.... .+.+ . ...+..|.| .++++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3344455788998745555555479999999983 333222 2322 1 114679999 588777765431
Q ss_pred ----------CCcEEEEECC---CCcEEEEeeCC------------CcceEEEEccCCCCCcEEEEEEcC-CeEEEEeCC
Q 007431 378 ----------DKNIKYWDTE---TGQVIRTFSTG------------KIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDMN 431 (604)
Q Consensus 378 ----------Dg~I~vWD~~---t~~~i~~~~~~------------~~~~~~~~~~~~~~~~~lvsg~~d-g~I~iwD~~ 431 (604)
+..|..+|+. +++.+...... ....+..+..+. .++..++++.. +.|..++..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 6789999999 88877665432 112244444443 34788888888 888888876
Q ss_pred CCceEEEEcC-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE--EEEeecC---CCCcccEE-EEcCCCCE
Q 007431 432 TKEITQEYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP---HMHSMPSI-SLHPNTNW 500 (604)
Q Consensus 432 s~~~~~~~~~-----h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~--~~~~~~~---~~~~v~~l-~~sp~g~~ 500 (604)
......-+.. .....+.|+++|+++.|++....|.|..+|+..+.. +.....+ .......| ..-.+|+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 5433222211 122367999999999998887799999999986544 2211001 11122333 33346777
Q ss_pred EEEE-EcCCeEEEEEcC
Q 007431 501 LAAQ-SLDNQILIYSTR 516 (604)
Q Consensus 501 l~s~-s~Dg~I~iwd~~ 516 (604)
|+++ ...+.+.+.+..
T Consensus 248 llV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEETTEEEEEECSS
T ss_pred EEEEcCCCCEEEEECCC
Confidence 4444 445555555443
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.72 E-value=0.018 Score=57.93 Aligned_cols=210 Identities=10% Similarity=0.095 Sum_probs=125.5
Q ss_pred CCCCceeeEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEeeCCC---------cceEEEEccCCCCCcEEEEEE----
Q 007431 355 GHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLNPDDDKQNILLAGM---- 420 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~t~~~i~~~~~~~---------~~~~~~~~~~~~~~~~lvsg~---- 420 (604)
....---++.|++....|+.++ ..++|..||...+...... ... .+..+.+...+..+.++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-cCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3344456889988656666666 7899999999866554442 221 123344421122245666544
Q ss_pred ---------cCCeEEEEeCC---CCceEEEEcC-------------cCCceeEEEEeCCCCEEEEEeCC-CcEEEEECCC
Q 007431 421 ---------SDKKIVQWDMN---TKEITQEYDQ-------------HLGAVNTITFVDSNRRFVTSSDD-KSLRVWEFGI 474 (604)
Q Consensus 421 ---------~dg~I~iwD~~---s~~~~~~~~~-------------h~~~V~~i~~sp~~~~l~sgs~D-g~I~iwdl~~ 474 (604)
.+..|..||+. +++.+....- -....+.++..++|+..++++.. +.|...+...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26889999999 7776655531 11358899999999999999888 8877777654
Q ss_pred CeEEEE-eec---CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc-Ccc-cccceEE-EEEcCCCCE
Q 007431 475 PVVIKY-ISE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-GHI-VAGYACQ-VNFSPDGRF 547 (604)
Q Consensus 475 ~~~~~~-~~~---~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~-~~~~v~~-l~~spdg~~ 547 (604)
...... ... ......+.|+++|+++.|++....+.|..+|+...... .+..-. +.. .-..... +..-.+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 422211 111 12234779999999999998877999999998743220 011100 110 0011122 233347777
Q ss_pred -EEEEcCCCcEEEEeCCCCe
Q 007431 548 -VMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 548 -L~sgs~dG~I~iwd~~t~~ 566 (604)
|++....+.+.+.+....+
T Consensus 248 llV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEETTEEEEEECSSTTS
T ss_pred EEEEcCCCCEEEEECCCCcc
Confidence 4444456666676654433
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.66 E-value=0.0015 Score=74.27 Aligned_cols=174 Identities=13% Similarity=0.075 Sum_probs=98.3
Q ss_pred eEEEEeCCCC-ceEE-EEcCcCCceeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCe--EEEEeecCCCCcccEEEE
Q 007431 424 KIVQWDMNTK-EITQ-EYDQHLGAVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPV--VIKYISEPHMHSMPSISL 494 (604)
Q Consensus 424 ~I~iwD~~s~-~~~~-~~~~h~~~V~~i~~sp~~~~l~sgs~D-----g~I~iwdl~~~~--~~~~~~~~~~~~v~~l~~ 494 (604)
.|+++|+.++ +.+. .+. .....+.|+|+++.|+..+.+ ..|+++++.++. ....+..........+.|
T Consensus 202 ~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 278 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK 278 (751)
T ss_dssp EEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred EEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence 5999999988 6321 111 123578999999888877665 258888887753 122222223334567899
Q ss_pred cCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC----CcEEEEeCCCCee
Q 007431 495 HPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSCKV 567 (604)
Q Consensus 495 sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d----G~I~iwd~~t~~~ 567 (604)
+|+|++|+..+.+ ..|.++|+.++........+.... ......+.|+.++.+++....+ ..|..+++.++..
T Consensus 279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~ 357 (751)
T 2xe4_A 279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD 357 (751)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence 9999998887643 468888887641100001111111 2233345544444444554443 3677778765322
Q ss_pred EEE-EecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 568 FRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 568 ~~~-l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
... +-.|.. .+.++.+. ++.++++...+|..+||
T Consensus 358 ~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 358 WSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred ceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 222 333443 34455554 45577777778876554
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.61 E-value=0.019 Score=65.26 Aligned_cols=216 Identities=7% Similarity=-0.070 Sum_probs=132.8
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC----ceEEEEcCcCCceeEEEE
Q 007431 376 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITF 451 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~----~~~~~~~~h~~~V~~i~~ 451 (604)
+....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++... .....+.........|++
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ccccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 3446788888887766555555555566666653 3366777777889999998753 334444445567788999
Q ss_pred eCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeeccccccc
Q 007431 452 VDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 452 sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D--g~I~iwd~~~~~~~~~~~~~~ 528 (604)
.+.++ ++++-...+.|.+.++........+. ........|+++|.+.+|+..... +.|.+.++..........
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--- 554 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--- 554 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---
Confidence 97765 45555667899999997655433332 344567899999987777666532 678888886543321111
Q ss_pred CcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecC--CCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007431 529 GHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h--~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
.. -.....|++++.+..|+.++ ..+.|...++........+... -....+|++.. +.++++-...+.|.
T Consensus 555 ~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 555 EN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp SS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred CC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 11 13466799998777766664 4578999998655444444432 22345666643 33333333344444
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.01 Score=58.85 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=117.1
Q ss_pred CCEEEEEE-CC-----CcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEEEEECC-----CcEEEEECCCCc---
Q 007431 326 GHLILSAG-MD-----TKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQ--- 390 (604)
Q Consensus 326 g~~L~sgs-~D-----g~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~s~s~D-----g~I~vWD~~t~~--- 390 (604)
+.+++.|+ .+ ..+.+||+ .+.+- ..+..-. ......+...++.+++.|+.+ ..+.+||+.+++
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~-~~~~W-~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDP-KTQEW-SFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEET-TTTEE-EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcC-CCCeE-EeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45555665 22 36788887 33322 1121111 111112222366777777765 468999998876
Q ss_pred EEEEe--eCCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEe
Q 007431 391 VIRTF--STGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSS 462 (604)
Q Consensus 391 ~i~~~--~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~~~~~~~~h~~~V-~~i~~sp~~~~l~sgs 462 (604)
....- ........+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .++... ++..++.|+
T Consensus 93 W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 43332 222222222222 23577777643 468999998875433222111111 222222 667777776
Q ss_pred CC-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccc
Q 007431 463 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 463 ~D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
.+ ..+.+||+.+..-...-..+....-.+++. -++++++.|+.+ ..+.+||+.+..-. ....+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r- 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPR- 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCC-
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcc-
Confidence 54 468899988775544322222222223333 256777777764 56899998765322 111111111
Q ss_pred ccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007431 533 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 566 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~ 566 (604)
.....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 245 -~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 -CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11112222 67777777655 357888887654
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.54 E-value=0.032 Score=61.76 Aligned_cols=228 Identities=10% Similarity=-0.004 Sum_probs=133.2
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC-CCcEEEEECCCCcE-EEEeeCC-CcceEEEEccCCC
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDD 411 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD~~t~~~-i~~~~~~-~~~~~~~~~~~~~ 411 (604)
...|+..++................+..|+|++.+..|+.+.. .+.|..+++..... ...+..+ ..+..+++.+..
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~- 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-
Confidence 4678888883221122223334456789999996666665544 67888899876532 2223322 456677777643
Q ss_pred CCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCeEEEEeecCCCCcc
Q 007431 412 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 489 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~--Dg~I~iwdl~~~~~~~~~~~~~~~~v 489 (604)
++++++-...+.|.+.++........+.........|++.|.+..|+.+.. .+.|...++......... .......
T Consensus 96 -~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~~P 173 (619)
T 3s94_A 96 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 173 (619)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSSE
T ss_pred -CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-eCCCCCC
Confidence 367777777899999999765544444455667889999997666555543 456777776543322222 2234567
Q ss_pred cEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007431 490 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
..|++++++..|..+. ..+.|..+++.......... +. ......+++..+ .+.++-...+.|...|..+++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8999999776666654 45778888886543322111 11 112234667655 34444446788999998877655
Q ss_pred EEE
Q 007431 569 RTL 571 (604)
Q Consensus 569 ~~l 571 (604)
..+
T Consensus 248 ~~i 250 (619)
T 3s94_A 248 REI 250 (619)
T ss_dssp EEC
T ss_pred EEE
Confidence 444
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.52 E-value=0.00023 Score=80.20 Aligned_cols=239 Identities=6% Similarity=-0.093 Sum_probs=134.9
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEEECCC----CcEEEEeeC-CCcceEEEEcc
Q 007431 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNP 408 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~t----~~~i~~~~~-~~~~~~~~~~~ 408 (604)
.+.|++.++ ........+ .....+..|+|++.+..|+.+. ..+.|..+++.+ ......+.. ...+..+++.+
T Consensus 385 ~~~I~~id~-~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTL-DRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECT-TSCCEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeC-CCCcceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 356777777 333333222 2334577899998666666554 457899999875 222212211 12233445443
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-C-CcEEEEECCCCeEEEEeecCCC
Q 007431 409 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPHM 486 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-D-g~I~iwdl~~~~~~~~~~~~~~ 486 (604)
. .++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++...... .+.....
T Consensus 463 ~--~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l 539 (699)
T 1n7d_A 463 I--HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENI 539 (699)
T ss_dssp S--SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSC
T ss_pred e--CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCC
Confidence 3 3356666666789999998765544444333456788999986655554432 2 67888777543222 2222233
Q ss_pred CcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007431 487 HSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
.....|+|+|++..|+.+. ..+.|.++++.......... .... ......|++..+ .++++....+.|..++..++
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~--~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKR--LAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC-CSSS--CSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe-cCCc--CCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 4567899999866555544 55789999986532221111 1111 112223555443 34445556789999998888
Q ss_pred eeEEEEecCCCcEEEEE
Q 007431 566 KVFRTLKCHEGVCIGCE 582 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~ 582 (604)
+.+..+........+|+
T Consensus 616 ~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEECCCTTCSSCCCCC
T ss_pred CceEEeecCCCCCcEEE
Confidence 88777754332234443
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.52 E-value=0.023 Score=56.50 Aligned_cols=228 Identities=7% Similarity=0.005 Sum_probs=117.5
Q ss_pred CCEEEEEEC--CCcEEEEecCCCCeeeEEecCC-CCceeeEEEccCCCEEEEEECC----CcEEEEECCCCcEEEEeeC-
Q 007431 326 GHLILSAGM--DTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFST- 397 (604)
Q Consensus 326 g~~L~sgs~--Dg~I~IWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s~D----g~I~vWD~~t~~~i~~~~~- 397 (604)
+.+++.|+. ...+.+||. ...+-. .+..- .......+..-++.+++.|+.+ ..+.+||+.+++....-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~-~~~~W~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNP-KDYSWT-DIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEET-TTTEEE-ECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecC-CCCCEe-cCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 345556654 356788887 333221 11110 1111111122366777777755 6788999988765443222
Q ss_pred -CCcceEEEEccCCCCCcEEEEEEcC------CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEeC------
Q 007431 398 -GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD------ 463 (604)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~s~~~~~~~~~h~~~V-~~i~~sp~~~~l~sgs~------ 463 (604)
.......... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. -++.+++.|+.
T Consensus 90 ~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 90 TPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTT
T ss_pred ccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCc
Confidence 2222222222 23577777765 568999998875433211111111 12222 25666676653
Q ss_pred ---CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCcccccc
Q 007431 464 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 464 ---Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+..-. ....+... ...
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~--r~~ 240 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSPMPWK--GVT 240 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEE-ECCCCSCC--BSC
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCCCCCC--ccc
Confidence 34588999988754433222222222233333 56677776643 46888998765321 11112111 111
Q ss_pred eEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007431 536 ACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 566 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~ 566 (604)
...+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 122223 67788888744 568999987754
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.018 Score=57.07 Aligned_cols=188 Identities=10% Similarity=0.108 Sum_probs=100.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeC--CCcceEEEEccCCCCCcEEEEEEcCC-----eEEEEeCCCCce
Q 007431 368 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEI 435 (604)
Q Consensus 368 dg~~L~s~s~D-----g~I~vWD~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~s~~~ 435 (604)
++..++.|+.+ ..+.+||..+.+....-.. ......+... ++.+++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 66777777754 3588999988765443322 2222222222 236777777653 588899887754
Q ss_pred EEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007431 436 TQEYDQHLGA-VNTITFVDSNRRFVTSSDD-------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 507 (604)
Q Consensus 436 ~~~~~~h~~~-V~~i~~sp~~~~l~sgs~D-------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D 507 (604)
...-...... -.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+
T Consensus 137 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBS
T ss_pred eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCC
Confidence 3321111111 1222222 56677776542 4588999987754443222222222233332 67777777764
Q ss_pred -----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCe
Q 007431 508 -----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCK 566 (604)
Q Consensus 508 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-----~I~iwd~~t~~ 566 (604)
+.+.+||+.+..-. ....+.... .....+.+ ++++++.|+.++ .|.+||..+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~-~~~~~~~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWR-QVADMNMCR--RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCCEe-eCCCCCCcc--ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 46889998764321 111111111 11111222 677777777553 48999987765
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.44 E-value=0.076 Score=54.20 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=120.3
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE--EEEee----CCCcceEEEEccCCC-CCcEEEEEEcC-----Ce
Q 007431 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV--IRTFS----TGKIPYVVKLNPDDD-KQNILLAGMSD-----KK 424 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~--i~~~~----~~~~~~~~~~~~~~~-~~~~lvsg~~d-----g~ 424 (604)
-..-..|+|.|+|++++ +..+|.|.+++ .++. +..+. ....+.-+++.++-. ++.++++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998554 56679999998 4432 22221 123456677777522 22344443332 67
Q ss_pred EEEEeCCCCc------eEEEEc---CcCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCC-------
Q 007431 425 IVQWDMNTKE------ITQEYD---QHLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIP------- 475 (604)
Q Consensus 425 I~iwD~~s~~------~~~~~~---~h~~~V~~i~~sp~~~~l~sgs~D-------------g~I~iwdl~~~------- 475 (604)
|..|+...+. ++..+. ........|.|.|+|.++++.+.. |.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876442 112233 111234689999999777765432 34555554320
Q ss_pred -----eEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeE------EEEEcCCcee---------------eccccccc
Q 007431 476 -----VVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQI------LIYSTRERFQ---------------LNKKKRFA 528 (604)
Q Consensus 476 -----~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg~I------~iwd~~~~~~---------------~~~~~~~~ 528 (604)
.....+...+ .....++|+| ++.++++-...+.+ .|.-+..+.. ......+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 0001111112 2356789999 56655554333331 1222222210 00011111
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee------EEEEecCCCcEEEEEEecCCCCEEEEEe-CCC
Q 007431 529 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCG-WDG 598 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG 598 (604)
.+ .....++| .+|.++++.-..+.|...++..... ...+-.-...+..+++.| ++.++++.. .+|
T Consensus 266 ~~---~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~~~~g 337 (352)
T 2ism_A 266 QG---FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTSNRDG 337 (352)
T ss_dssp TC---CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEECSTTT
T ss_pred CC---CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEeCCCC
Confidence 11 23456677 4677766666777888887754321 122222235789999999 555555543 344
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.38 E-value=0.061 Score=54.21 Aligned_cols=230 Identities=8% Similarity=0.027 Sum_probs=118.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec---CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~---~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
...+.+|.|.+ +..++ ++..+.|.. ..+.++.-.... .+...+..|.+.+++..++++ .+|.|.. ..+.|
T Consensus 79 ~~~~~~i~~~~--~~~~~-~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWI-VGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSG 151 (327)
T ss_dssp CCEEEEEEEET--TEEEE-EEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTT
T ss_pred CccEEEEEecC--CeEEE-EECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCC
Confidence 34578888875 34444 445564443 323444333332 234567888887777655554 4554422 22334
Q ss_pred cEEEEeeCCC--cceEEEEccCCCCCcEEEEEEcCCeEEEE-eC--CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007431 390 QVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQW-DM--NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 390 ~~i~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iw-D~--~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
+.-....... ....+.+.+. +.+++++ ..|.|+.- |- .+-+.+ -......+..+.+.+++..+ .++.+
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPS---GEYVAVS-SRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTT---SCEEEEE-TTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCEEeecCCCcceEEEEEcCC---CcEEEEE-CCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCC
Confidence 3333332222 2333444442 2445444 45555443 32 222222 22345678889998888655 45567
Q ss_pred CcEEEEECCCCeEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007431 465 KSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
|.+++.+...+.....+..+ ....+.++.+.+++.+++++ .++.| ++....+............ ...+..+.|
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~--~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKV--PSNFYKILF 300 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTS--SSCCCEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCC--CCCeEEEEE
Confidence 87777643323333333222 22357888898877766654 46766 3444444333222211111 123456777
Q ss_pred cCCCCEEEEEcCCCcEEEEe
Q 007431 542 SPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd 561 (604)
.+++. +++++.+|.|.-++
T Consensus 301 ~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 301 FSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EETTE-EEEECSTTEEEEEC
T ss_pred ECCCc-eEEEcCCceEEEEc
Confidence 75554 55666788877765
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.35 E-value=0.027 Score=57.59 Aligned_cols=207 Identities=14% Similarity=0.237 Sum_probs=116.8
Q ss_pred ceeeEEEccCCCEEEEE------------ECCCcEEEEECCC--CcEEE-EeeC------CCcceEEEEccCCCCC-cEE
Q 007431 359 AVRDISFCNDGTKFLTA------------SYDKNIKYWDTET--GQVIR-TFST------GKIPYVVKLNPDDDKQ-NIL 416 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~------------s~Dg~I~vWD~~t--~~~i~-~~~~------~~~~~~~~~~~~~~~~-~~l 416 (604)
..-+|...++|..++++ ..+|.|.++|..+ ++... .+.. .-.+.-+.+..+.++. .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45566777777555555 2689999999873 33221 1221 1245556665542222 345
Q ss_pred EEEEc--CCeEEEEeCCCC--c--eEEEEcCc-CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEEC
Q 007431 417 LAGMS--DKKIVQWDMNTK--E--ITQEYDQH-LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWEF 472 (604)
Q Consensus 417 vsg~~--dg~I~iwD~~s~--~--~~~~~~~h-~~~V~~i~~sp~~~~l~sgs~-----------------Dg~I~iwdl 472 (604)
++-.. +..|.+|++... . .+..+.+. ....+.+.+.++|.++++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 55444 467777766543 2 23344332 345789999999987776541 244555554
Q ss_pred CCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEE
Q 007431 473 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMS 550 (604)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~s 550 (604)
. .. ..+. ......+.++|+|+++.|+++. ..+.|..|++.....+.....+. ..+..-.+++.+ +|++.++
T Consensus 211 ~--~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 211 N--DV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--CC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEE
T ss_pred C--eE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEE
Confidence 3 21 2221 1334568899999999887776 46889999986422222222231 134566789999 5988776
Q ss_pred EcCC-CcEEEEeCC--CCeeEEEEe
Q 007431 551 GDGE-GKCWFWDWK--SCKVFRTLK 572 (604)
Q Consensus 551 gs~d-G~I~iwd~~--t~~~~~~l~ 572 (604)
+..+ +.|..|+-. .+..+..++
T Consensus 284 ~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 284 CHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred ecCCceEEEEECCCCCCCCEEEEEE
Confidence 6433 344444433 244444443
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.013 Score=58.16 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=110.1
Q ss_pred CCCEEEEEE-CC-----CcEEEEECCCCcEEEEeeC--CCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCc
Q 007431 368 DGTKFLTAS-YD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE 434 (604)
Q Consensus 368 dg~~L~s~s-~D-----g~I~vWD~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~ 434 (604)
++..++.|+ .+ ..+.++|+.+++....-.. ......+... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 4688899887764432211 1112222221 23677777754 468999998876
Q ss_pred ---eEEEEcCcCCce-eEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007431 435 ---ITQEYDQHLGAV-NTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 435 ---~~~~~~~h~~~V-~~i~~sp~~~~l~sgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
-...-....... .+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 333211111111 122222 56677777643 3588999887754433222222222233332 677777776
Q ss_pred cC-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEEEecC-
Q 007431 506 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCH- 574 (604)
Q Consensus 506 ~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~~~~~l~~h- 574 (604)
.+ ..+.+||+.+..-. ....+.... .....+.+ ++++++.|+.+ ..|.+||..+.+-...-...
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWT-NVTPMATKR--SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCcccceEEEEeCCCCcEE-eCCCCCccc--ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 54 45888998765322 111111111 11112222 56777777654 46899999876543221111
Q ss_pred -CCcEEEEEEecCCCCEEEEEeCCC
Q 007431 575 -EGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 575 -~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
......+.+ ++.+++.||.++
T Consensus 243 ~r~~~~~~~~---~~~i~v~GG~~~ 264 (301)
T 2vpj_A 243 PRCYVGATVL---RGRLYAIAGYDG 264 (301)
T ss_dssp CCBSCEEEEE---TTEEEEECCBCS
T ss_pred cccceeEEEE---CCEEEEEcCcCC
Confidence 111122222 456777777653
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.27 E-value=0.35 Score=53.42 Aligned_cols=156 Identities=6% Similarity=-0.030 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe-cCCCCceeeEEEccCCCEEEEEEC--CCcEEEEECCCCc
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 390 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~-~~h~~~V~~l~fspdg~~L~s~s~--Dg~I~vWD~~t~~ 390 (604)
.....|++.+.++++.++-...+.|.+.++. +.....+ ...-...+.|++.|....|+.+.. .+.|...++....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLD--GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT--STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecC--CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 4577888987756666776677889999983 3222332 244456789999985555555543 4678888877655
Q ss_pred EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007431 391 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
....+.....+..+++.+.. +.++++-...+.|..+|+..... ..+.........|++.. +..+++-...+.|...
T Consensus 158 ~~~l~~~~~~P~GlalD~~~--~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAK--RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp CEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred eEEEECCCCCcceEEEcccc--CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 44444444556677776643 35666667788999999976543 33333445566788875 5566666667888888
Q ss_pred ECCCC
Q 007431 471 EFGIP 475 (604)
Q Consensus 471 dl~~~ 475 (604)
|..++
T Consensus 234 dk~tg 238 (628)
T 4a0p_A 234 NKTSG 238 (628)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 86544
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.27 E-value=0.032 Score=55.69 Aligned_cols=226 Identities=10% Similarity=0.105 Sum_probs=114.3
Q ss_pred EEEEEECCCcEEEEecCCCCeee-EEecCCCCceeeEEEccCCCEEEEEEC----C-------CcEEEEECCCCcEEEEe
Q 007431 328 LILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASY----D-------KNIKYWDTETGQVIRTF 395 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~L~s~s~----D-------g~I~vWD~~t~~~i~~~ 395 (604)
+++.|+ ..+.+||.. +.+-. ..+..............++..++.|+. + ..+.+||..+++....-
T Consensus 7 l~~~GG--~~~~~yd~~-~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPA-ANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETT-TTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCC-CCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 444555 568889983 44322 222212222233333457788888884 1 12778898887653322
Q ss_pred eCCCc--ceEEEEccCCCCCcEEEEEEcC--------CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEeC-
Q 007431 396 STGKI--PYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD- 463 (604)
Q Consensus 396 ~~~~~--~~~~~~~~~~~~~~~lvsg~~d--------g~I~iwD~~s~~~~~~~~~h~~~V-~~i~~sp~~~~l~sgs~- 463 (604)
..... ...+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. -+++.++.|+.
T Consensus 84 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 84 PLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp CBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 11111 1122222 22567777632 468999998875332211111111 12222 35667777765
Q ss_pred C-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeecccccccCcccc
Q 007431 464 D-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 464 D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
+ ..+.+||..+..-...-..+....-.+++.. ++++++.|+.++ .+.+||+.+..-. .........
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r-- 234 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWA-PFEAFPQER-- 234 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEE-EECCCSSCC--
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEE-ECCCCCCcc--
Confidence 2 4689999887754332222222222233332 677778887654 5888888765321 111111111
Q ss_pred cceEEEEEcCCCCEEEEEcCC--------------CcEEEEeCCCCee
Q 007431 534 GYACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKV 567 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~d--------------G~I~iwd~~t~~~ 567 (604)
.....+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 11112222 56777777653 2477888877653
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.12 Score=52.72 Aligned_cols=227 Identities=9% Similarity=0.080 Sum_probs=116.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec---CCCCceeeEEEccC---CCEEEEEEC-C-----Cc
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCND---GTKFLTASY-D-----KN 380 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~---~h~~~V~~l~fspd---g~~L~s~s~-D-----g~ 380 (604)
-..-..|+|.|+ +.++ .+..+|.|.+++ ......+..+. ........|+|+|+ +..|+.+.. . +.
T Consensus 30 l~~P~~ia~~pd-G~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPD-GGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTT-SCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCC-CeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999 7754 456679999988 22222222221 22356789999998 555554433 2 57
Q ss_pred EEEEECCCCc-----EE-EEee----CCCcceEEEEccCCCCCcEEEEEEc-------------CCeEEEEeCCC-----
Q 007431 381 IKYWDTETGQ-----VI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNT----- 432 (604)
Q Consensus 381 I~vWD~~t~~-----~i-~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD~~s----- 432 (604)
|..++...+. .+ ..+. ..+.+..+.+.+++ .++++.+. .|.|..++...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG---MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS---CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC---CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 8888876542 11 1232 12344566776643 44444321 25677777653
Q ss_pred ---------CceEEEEcCcCCceeEEEEeC-CCCEEEEEeCCCcE------EEEECCCCe------------------EE
Q 007431 433 ---------KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSL------RVWEFGIPV------------------VI 478 (604)
Q Consensus 433 ---------~~~~~~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I------~iwdl~~~~------------------~~ 478 (604)
...+... ++ .....++|+| ++.++++-.....+ .|.-+..+. +.
T Consensus 184 npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1111111 22 2356788998 56655554333331 122211111 11
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee---ecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007431 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
..+ ........+++ .+|.++++....+.|...++..... ......+.. ....+..+++.|||.+.++..
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 111 11223445666 3566655555567777777653321 000111111 124567899999998776654
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.15 E-value=0.035 Score=54.96 Aligned_cols=215 Identities=8% Similarity=0.011 Sum_probs=106.9
Q ss_pred CEEEEEECC----CcEEEEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCceEEE
Q 007431 370 TKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQE 438 (604)
Q Consensus 370 ~~L~s~s~D----g~I~vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~~~~~ 438 (604)
..++.|+.+ ..+.++|+.+.+....-. .......+... ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE----CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 345555543 457888888776443321 11111222222 23577777754 4688999988754332
Q ss_pred EcCcCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----
Q 007431 439 YDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----- 507 (604)
Q Consensus 439 ~~~h~~~-V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D----- 507 (604)
-...... -.+++.. ++..++.|+.++ .+.+||+.+..-...-..+....-.+++.. ++++++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCc
Confidence 2111111 1222222 567777777553 577889887764443222222222233332 56666766542
Q ss_pred --CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEE--EecCCCcE
Q 007431 508 --NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCHEGVC 578 (604)
Q Consensus 508 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~~~~~--l~~h~~~V 578 (604)
..+.+||+.+..-.. ...+.... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 171 ~~~~~~~yd~~~~~W~~-~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTY-IAEMSTRR--SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp ECCCEEEEETTTTEEEE-ECCCSSCC--BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cccEEEEEeCCCCcEEE-CCCCcccc--ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 458889987643211 11111111 11111222 66777777654 3689999887653322 11111111
Q ss_pred EEEEEecCCCCEEEEEeCCC
Q 007431 579 IGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~DG 598 (604)
..+.+ ++.+++.||.++
T Consensus 246 ~~~~~---~~~i~v~GG~~~ 262 (302)
T 2xn4_A 246 GVCAV---NGLLYVVGGDDG 262 (302)
T ss_dssp EEEEE---TTEEEEECCBCS
T ss_pred eEEEE---CCEEEEECCcCC
Confidence 12222 456777887664
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.10 E-value=0.042 Score=54.47 Aligned_cols=214 Identities=6% Similarity=-0.024 Sum_probs=109.9
Q ss_pred CEEEEEEC--CCcEEEEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcC----CeEEEEeCCCCceEEEEcC
Q 007431 370 TKFLTASY--DKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYDQ 441 (604)
Q Consensus 370 ~~L~s~s~--Dg~I~vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~iwD~~s~~~~~~~~~ 441 (604)
.+++.|+. ...+.+||..+++....-. .......+... ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 34555554 3578899998876543321 11222222222 22577777754 6789999988754433221
Q ss_pred cCCce-eEEEEeCCCCEEEEEeCC------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc--------
Q 007431 442 HLGAV-NTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-------- 506 (604)
Q Consensus 442 h~~~V-~~i~~sp~~~~l~sgs~D------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-------- 506 (604)
..... .+++. -++.+++.|+.+ ..+.+||..+..-...-..+....-.+++. -++++++.|+.
T Consensus 89 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 89 PTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred CccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 11111 12222 266777777755 468999998876444322222222223333 36666666654
Q ss_pred -CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEE--EecCCCcE
Q 007431 507 -DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCHEGVC 578 (604)
Q Consensus 507 -Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~~~~~--l~~h~~~V 578 (604)
-..+.+||+.+..-. ....+.... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 167 ~~~~~~~yd~~~~~W~-~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 167 VLNSCEVYDPATETWT-ELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp ECCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred ccceEEEeCCCCCeEE-ECCCccchh--hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 345888998765321 111111111 11111222 66677777643 4688999887643221 11111112
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 007431 579 IGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~D 597 (604)
..+.+ ++.+++.||.+
T Consensus 242 ~~~~~---~~~i~v~GG~~ 257 (306)
T 3ii7_A 242 KCAAV---GSIVYVLAGFQ 257 (306)
T ss_dssp EEEEE---TTEEEEEECBC
T ss_pred eEEEE---CCEEEEEeCcC
Confidence 22333 45688888865
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.09 E-value=0.036 Score=55.21 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=98.7
Q ss_pred CCCEEEEEEC----C-----CcEEEEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCC
Q 007431 368 DGTKFLTASY----D-----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 431 (604)
Q Consensus 368 dg~~L~s~s~----D-----g~I~vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~ 431 (604)
++.+++.|+. + ..+.+||+.+.+....-. .......+... ++.+++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCC
Confidence 5667777765 2 468889998876443322 11222222222 22567776643 468899998
Q ss_pred CCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007431 432 TKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 432 s~~~~~~~~~h~~~-V~~i~~sp~~~~l~sgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
+.+-...-...... -.+++.. ++.+++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 77533221111111 1122222 56677777654 4688999887654432221222222233333 677777776
Q ss_pred cC-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCee
Q 007431 506 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKV 567 (604)
Q Consensus 506 ~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~~ 567 (604)
.+ ..+.+||+.+..-. ....+.... .....+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWT-FVAPMKHRR--SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEE-ECCCCSSCC--BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCCCCccceEEEEeCCCCcEE-ECCCCCCCc--cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 64 56899998765322 111121111 11111222 66777777643 3578888876543
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.07 E-value=0.18 Score=51.49 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=123.5
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEee----CCCcceEEEEccCCCCCcEEEEEEc----C----C
Q 007431 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFS----TGKIPYVVKLNPDDDKQNILLAGMS----D----K 423 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~-~i~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~----d----g 423 (604)
-.....|+|.|+|+ |+++..+|.|++++ ..++ .+..+. ....+.-+++.++-.....|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568999999997 55556679999997 3454 222221 1234556777765222234444433 3 6
Q ss_pred eEEEEeCCCC--c-----e-EEEEcC-cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCe-----
Q 007431 424 KIVQWDMNTK--E-----I-TQEYDQ-HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV----- 476 (604)
Q Consensus 424 ~I~iwD~~s~--~-----~-~~~~~~-h~~~V~~i~~sp~~~~l~sgs~D-------------g~I~iwdl~~~~----- 476 (604)
.|..|+.... . . +..+.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887654 1 1 111221 11234679999999877765432 345444443210
Q ss_pred --EEEEeecCCCCcccEEEEcC-CCCEEEEEEcCC---eEEEEEcCCce--------e-----ecccccccCcccccceE
Q 007431 477 --VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDN---QILIYSTRERF--------Q-----LNKKKRFAGHIVAGYAC 537 (604)
Q Consensus 477 --~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg---~I~iwd~~~~~--------~-----~~~~~~~~~~~~~~~v~ 537 (604)
....+...+ .....++|+| ++.++++-...+ .|.+....... . ......+. .......
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWAPS 262 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCCEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcCCc
Confidence 001111122 2456899999 566555433222 23333211100 0 00001110 0123456
Q ss_pred EEEEc-------CCCCEEEEEcCCCcEEEEeCCCC-eeE--EEEe-cCCCcEEEEEEecCCCCEEEEEe
Q 007431 538 QVNFS-------PDGRFVMSGDGEGKCWFWDWKSC-KVF--RTLK-CHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 538 ~l~~s-------pdg~~L~sgs~dG~I~iwd~~t~-~~~--~~l~-~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
.++|. .+|.++++.-..+.|...++... +.. ..+. .....+..+++.| ++.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 78883 57877777777888999988753 332 2332 2245789999999 566666654
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.06 E-value=0.0022 Score=72.21 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=117.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---CeeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCC
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~---~~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~ 389 (604)
..+..|+|.+..+.++++-...+.|+.+++... ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999874555555556688999988320 1211222222234567888864 444455455688999998866
Q ss_pred cEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcC-CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCc
Q 007431 390 QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKS 466 (604)
Q Consensus 390 ~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d-g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~-~l~sgs~Dg~ 466 (604)
.....+.. ...+..+++.+.. +.++++-... +.|..+++........+.......+.|+|++++. ++++-+..+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 54444432 2445556665533 3445544333 7888887754322222222345567899998755 4555556778
Q ss_pred EEEEECCCCeEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 467 LRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
|.++++........+.. ........|++..+ .++++....+.|..++..++..+.
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 99999865333222221 12233455666543 444454556889999876655443
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.02 Score=58.05 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=110.0
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEE-EcCCeEEEEeCCCCceEEEEcC----c
Q 007431 370 TKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ----H 442 (604)
Q Consensus 370 ~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~s~~~~~~~~~----h 442 (604)
.+++.++.||.|.-+|..+|+.+..+... ..+....-......+..++.. +.||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999999776 222211111111122333333 5899999999998865544421 1
Q ss_pred CCceeE---EEE-----eCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCc------ccEEEEc-----CCCCEEEE
Q 007431 443 LGAVNT---ITF-----VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS------MPSISLH-----PNTNWLAA 503 (604)
Q Consensus 443 ~~~V~~---i~~-----sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~------v~~l~~s-----p~g~~l~s 503 (604)
..++.. ..+ ...+..+++|+.+|.+...|+.+++.+..+....... ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 0145688899999999999999999998876432211 1111111 12456777
Q ss_pred EEcCCeEEEEEcCCceeecccc--cccCcccccce-EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007431 504 QSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYA-CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v-~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
+..+..+.+.+ +++. ..... ..........+ .+..++.|+.+ +.++.||.|..+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777766665 3332 11110 00000000000 00011234666 446788888888888888765
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.11 Score=51.88 Aligned_cols=228 Identities=7% Similarity=0.091 Sum_probs=112.4
Q ss_pred EEEEEECCCcEEEEecCCCCeeeE-EecCCCCceeeEEEccCCCEEEEEEC----CC-------cEEEEECCCCcEEEEe
Q 007431 328 LILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----DK-------NIKYWDTETGQVIRTF 395 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~L~s~s~----Dg-------~I~vWD~~t~~~i~~~ 395 (604)
+++.|+. .+.+||.. ..+-.. ................++..++.|+. ++ .+.++|..+.+....-
T Consensus 18 i~~~GG~--~~~~yd~~-~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPM-ENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETT-TTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCC-CCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 37788873 333222 22211122222333457778888873 11 1778888877654332
Q ss_pred eC--CCcceEEEEccCCCCCcEEEEEEcC-------CeEEEEeCCCCceEEEEcCcCCce-eEEEEeCCCCEEEEEeC--
Q 007431 396 ST--GKIPYVVKLNPDDDKQNILLAGMSD-------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD-- 463 (604)
Q Consensus 396 ~~--~~~~~~~~~~~~~~~~~~lvsg~~d-------g~I~iwD~~s~~~~~~~~~h~~~V-~~i~~sp~~~~l~sgs~-- 463 (604)
.. ......+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. .++.+++.|+.
T Consensus 95 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEES
T ss_pred CCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCC
Confidence 21 1111222222 23677777754 358889998775433211111111 12222 35667777763
Q ss_pred ----CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccccc
Q 007431 464 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 464 ----Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ......+.... .
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~ 245 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQER--S 245 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCC--B
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcc--c
Confidence 24589999988764433222222222233333 56777777654 357788886643 11122221111 1
Q ss_pred ceEEEEEcCCCCEEEEEcCC--------------CcEEEEeCCCCeeEE
Q 007431 535 YACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKVFR 569 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~d--------------G~I~iwd~~t~~~~~ 569 (604)
....+. -++++++.|+.+ ..+.+||..+.+-..
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 111122 256677777643 358888988765433
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.05 E-value=0.3 Score=49.77 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=121.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe-eeEEec---CCCCceeeEEEccC---CCEEEEEEC----C---
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYM---GHSKAVRDISFCND---GTKFLTASY----D--- 378 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~---~h~~~V~~l~fspd---g~~L~s~s~----D--- 378 (604)
-....+|+|.|+ +. |+.+..+|.|++++. .+. .+..+. ........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GR-YLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEET-TE-EEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCC-Ce-EEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 445789999998 76 555566799999974 443 222221 12356889999997 445554433 2
Q ss_pred -CcEEEEECCCC-------cEE-EEeeC--CCcceEEEEccCCCCCcEEEEEEc-------------CCeEEEEeCCCC-
Q 007431 379 -KNIKYWDTETG-------QVI-RTFST--GKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK- 433 (604)
Q Consensus 379 -g~I~vWD~~t~-------~~i-~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD~~s~- 433 (604)
..|..|+.... +.+ ..+.. .+....+.+.+++ .++++.+. .|.|..++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG---~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG---MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS---CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC---cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777877654 111 11221 2345567777654 44444322 256777766432
Q ss_pred --------ceEEEEcCcCCceeEEEEeC-CCCEEEEEeCCCc---EEEEECCC--------C--------eEEEEeecCC
Q 007431 434 --------EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKS---LRVWEFGI--------P--------VVIKYISEPH 485 (604)
Q Consensus 434 --------~~~~~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~---I~iwdl~~--------~--------~~~~~~~~~~ 485 (604)
..+.. .++ .....++|+| +++++++-..... |.+..-.. . .++..+. ..
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 11221 123 2346899999 5665554432221 33222100 0 0111110 11
Q ss_pred CCcccEEEEc-------CCCCEEEEEEcCCeEEEEEcCCceeecc-cccccCcccccceEEEEEcCCCCEEEEEc
Q 007431 486 MHSMPSISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 486 ~~~v~~l~~s-------p~g~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
......+++. .+|.++++....+.|..+++........ ...+.+. ...+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV--FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT--SCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC--CCCeeEEEECCCCcEEEEEe
Confidence 2346677773 4666666666667888888764321111 1112111 34577899999997766654
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.93 E-value=0.18 Score=56.96 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=123.4
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC---CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007431 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
...|++|.-..+|. |..|+.+| |..||-.. ...+.. .....+.++..+.. ..|.+|+.+ -+..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~--g~lWigT~~-Gl~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDN--TYLYMGTDN-GILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETT--TEEEEEETT-EEEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCC--CcEEEEeCC-CeEEEeCCCC
Confidence 45689998887775 55566666 55666432 122211 11122333333322 457777765 4889998876
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
............|.++.. .++ .|..++.+ -|..+|..+........ ......|.++....++.+.+ ++. +-|
T Consensus 93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl 167 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGL 167 (758)
T ss_dssp EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEE
T ss_pred EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCH
Confidence 432211112234776654 344 56666665 58889987665443311 11234577888777776554 454 457
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007431 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
..|+..+..................|.++...+++..|..|+. +-|..+|..+++...........|.++.... ++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~- 244 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGD- 244 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCC-
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCC-
Confidence 7888765432111000001111234677878777776666664 4688899877654322111233577776655 343
Q ss_pred EEEEeCCCcEEEe
Q 007431 591 VATCGWDGLIKYW 603 (604)
Q Consensus 591 l~tgg~DG~I~vW 603 (604)
|..|+.+| |.++
T Consensus 245 lWigT~~G-l~~~ 256 (758)
T 3ott_A 245 LLAGTDNG-LYVY 256 (758)
T ss_dssp EEEEETTE-EEEE
T ss_pred EEEEeCCc-eeEE
Confidence 44444444 4444
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.93 E-value=0.043 Score=64.88 Aligned_cols=238 Identities=11% Similarity=0.112 Sum_probs=138.9
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcE
Q 007431 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (604)
..|.|-|+.+.....+.-..-. +.-.+|..+.|+.-. ..++.|+|+++.+.+..+.....+....|. +.. .
T Consensus 48 ~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~--~ 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLN--T 118 (1630)
T ss_pred ceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec--CCC--e
Confidence 4788888855444433322222 233577666665544 689999999999988888776654444444 332 2
Q ss_pred EEEEEcCCeEEEEeCCC-CceEEEEcCc----CCceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCeEEEEeec
Q 007431 416 LLAGMSDKKIVQWDMNT-KEITQEYDQH----LGAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s-~~~~~~~~~h----~~~V~~i~~sp~~~~l~sgs-------~Dg~I~iwdl~~~~~~~~~~~ 483 (604)
|+.. .+..|+.|++.. ..++..+..| ...|..-..+++.++++..+ -.|.+.+|....... +...
T Consensus 119 l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~ie 195 (1630)
T 1xi4_A 119 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 195 (1630)
T ss_pred eEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhh
Confidence 3333 357899999964 2444445444 35566777788888877543 357888888765432 2222
Q ss_pred CCCCcccEEEEc--CC-CCEEEEEEc---CCeEEEEEcCCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007431 484 PHMHSMPSISLH--PN-TNWLAAQSL---DNQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 484 ~~~~~v~~l~~s--p~-g~~l~s~s~---Dg~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
+|......+.+. +. ...++.+.. .+.+.|.++... ......+ .+...........+..|+.-..+..
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 343333332221 11 123332222 268888887542 1111111 1111111233446888888889999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007431 551 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
.+.-|.|+++|+.|+.++..-+-...+|...+-+.
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~ 310 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCC
Confidence 99999999999999998766554455554444443
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.78 E-value=0.052 Score=54.00 Aligned_cols=217 Identities=10% Similarity=0.035 Sum_probs=108.3
Q ss_pred CCCEEEEEECC----CcEEEEECCCCcEEEEee--CCCcceEEEEccCCCCCcEEEEEEc----C-----CeEEEEeCCC
Q 007431 368 DGTKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMS----D-----KKIVQWDMNT 432 (604)
Q Consensus 368 dg~~L~s~s~D----g~I~vWD~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~----d-----g~I~iwD~~s 432 (604)
++..++.|+.+ ..+.++|..+++....-. .......+... ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV----GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE----CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 45566666532 468888888776543321 11112222222 2256777665 2 4688999987
Q ss_pred CceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007431 433 KEITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 433 ~~~~~~~~~h~~~-V~~i~~sp~~~~l~sgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
.+-...-...... -.+++.. ++.+++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 7533221111111 1122222 56677776643 4688899887654433222222222233333 6677777765
Q ss_pred C-----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEE--EecC
Q 007431 507 D-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCH 574 (604)
Q Consensus 507 D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~~~~~--l~~h 574 (604)
+ +.+.+||+.+..-. ....+... ......+.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~-~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWR-MITAMNTI--RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEE-ECCCCSSC--CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred CCCCcCceEEEEeCCCCeEe-eCCCCCCc--cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 4 45888998765322 11111111 111112222 66777777654 5699999887653221 1111
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCC
Q 007431 575 EGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 575 ~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
.... +++.. ++.+++.||.++
T Consensus 253 r~~~-~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 253 RSAL-GITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp CBSC-EEEEE--TTEEEEECCBCS
T ss_pred ccce-EEEEE--CCEEEEEcCcCC
Confidence 1111 22222 456777777653
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.75 E-value=0.54 Score=46.94 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=122.5
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCC
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK 399 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t-~~~i~~~~~~~ 399 (604)
.+|. .+.||.-. ..++.|+|+ +....+..+.- ...|.-=.|-.+ +.|+..+ +..|.-|+++. ..+.+.|..+.
T Consensus 74 MnP~-~~ViALra-g~~LQiFnl-etK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEET-TTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eCCC-ccEEEEec-CCeEEEech-HHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 4776 66666655 678999999 56666666653 356666667644 3455444 36899999974 35555554432
Q ss_pred ---cceEEEEccCCCCCcEEEEEE------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---CCEEEEEeC---C
Q 007431 400 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSD---D 464 (604)
Q Consensus 400 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~---~~~l~sgs~---D 464 (604)
...++.+..+.+..-++++|- -.|.+.+|..+.+ ..+.+++|.+.-..+.+..+ ...|+.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 244566666655555555554 2478889988654 56777888665544433211 113333322 2
Q ss_pred CcEEEEECCCC--------eEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 465 KSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 465 g~I~iwdl~~~--------~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+.++|.++... +....+..+ ...-..++.+++....+..-+.-|.|.+||+.++..+.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 58999998543 112222212 23345678888888899999999999999999987664
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.72 E-value=1.1 Score=50.31 Aligned_cols=298 Identities=10% Similarity=0.073 Sum_probs=154.4
Q ss_pred ccccccceeecCCCccccCCCCc---ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe
Q 007431 277 ETDYQGRSWIAPPKDAKAANDHC---YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY 353 (604)
Q Consensus 277 ~~d~~~r~w~~~~~~~~~~~~~~---~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~ 353 (604)
..|..|..|+.....+...+... |.+.. ......|.+|....+ ..|..|+.+| +..||.. ........
T Consensus 28 ~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~-----~~~~~~i~~i~~d~~--g~lWigT~~G-l~~yd~~-~~~f~~~~ 98 (758)
T 3ott_A 28 LQDSEGLIWIGSNKGLFSYDGYSTQQHFTYG-----ENNNTRIYCGVIIDN--TYLYMGTDNG-ILVYNYR-ADRYEQPE 98 (758)
T ss_dssp EECTTSCEEEEESSCEEEECSSCEEECSCTT-----STTSSCEEEEEEETT--TEEEEEETTE-EEEEETT-TTEECCCS
T ss_pred EECCCCCEEEEECCCccccCCCceEEEEccC-----CCCCceEEEEEEcCC--CcEEEEeCCC-eEEEeCC-CCEEECcc
Confidence 35778888987654432222111 11100 112456888877665 4666777665 7788873 33322111
Q ss_pred cCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007431 354 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 354 ~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
......|.++.. .+| .|..++.+ -|..+|..+++...... .-....+..+..+.. ..+.+|+. +-|..++.
T Consensus 99 ~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g~lWigt~-~Gl~~~~~ 172 (758)
T 3ott_A 99 TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD--NQIYVGTY-NGLCRYIP 172 (758)
T ss_dssp CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT--CCEEEEET-TEEEEEET
T ss_pred cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC--CCEEEEeC-CCHhhCcc
Confidence 112335777654 344 56666665 68889988766543211 111122334444332 23555665 45888898
Q ss_pred CCCceEEEEcCc------CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007431 431 NTKEITQEYDQH------LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 431 ~s~~~~~~~~~h------~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
.+++... +... ...|.++....++..|..|+. +-|..+|..+........ .....|.++....+|.+.+ |
T Consensus 173 ~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-g 248 (758)
T 3ott_A 173 SNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-G 248 (758)
T ss_dssp TTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-E
T ss_pred CCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-E
Confidence 7765432 2111 124888888877776666664 458889987665432211 1234577888877776544 4
Q ss_pred EcCCeEEEEEcCCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-------cCC
Q 007431 505 SLDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------CHE 575 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-------~h~ 575 (604)
+. +-+.+++..+......... .........|.++....+|.+ ..|+..| +.++.... ....+. ...
T Consensus 249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~ 323 (758)
T 3ott_A 249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDG 323 (758)
T ss_dssp ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCC
T ss_pred eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCC
Confidence 54 4578888755322111000 001122345778888887764 4455556 55543321 112221 112
Q ss_pred CcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 576 GVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 576 ~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
..|.++.-.. ++. |..|+.+|.+
T Consensus 324 ~~v~~i~~D~-~g~-lWiGt~~Gl~ 346 (758)
T 3ott_A 324 NQFYSLFRDS-KGF-YWFGGANGLI 346 (758)
T ss_dssp CBEEEEEECT-TCC-EEEEETTEEE
T ss_pred ceEEEEEEcC-CCC-EEEeeCCcce
Confidence 3577776655 333 4444455543
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.67 E-value=0.095 Score=52.18 Aligned_cols=211 Identities=10% Similarity=0.003 Sum_probs=104.9
Q ss_pred EEEEECCCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEc-----C------CeEEEEeCCCCceEEE
Q 007431 372 FLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS-----D------KKIVQWDMNTKEITQE 438 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~-----d------g~I~iwD~~s~~~~~~ 438 (604)
++.|+ ..+.+||..+++-.. .... ........... ++.+++.|+. . ..+.+||+.+.+-...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 44444 579999999887543 2221 11222222222 2367777773 1 2378899988754321
Q ss_pred EcCcCCce-eEEEEeCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-
Q 007431 439 YDQHLGAV-NTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D- 507 (604)
Q Consensus 439 ~~~h~~~V-~~i~~sp~~~~l~sgs~D--------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-D- 507 (604)
-....... .+++.. ++..++.|+.+ ..+.+||..+..-...-..+....-.+++. -++++++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence 11111111 122222 56677777632 458899998775433222122222223333 46677777776 2
Q ss_pred ----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCeeEEEEec--CCC
Q 007431 508 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCKVFRTLKC--HEG 576 (604)
Q Consensus 508 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-----~I~iwd~~t~~~~~~l~~--h~~ 576 (604)
+.+.+||+.+..-. ....+... ......+.+ ++++++.|+.++ .+.+||..+.+-...-.. ...
T Consensus 161 ~~~~~~~~~yd~~~~~W~-~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWK-ELAPMQTA--RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp SCBCCCEEEEETTTTEEE-ECCCCSSC--CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CcccceEEEEeCCCCeEE-ECCCCCCc--hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 46889998765321 11111111 111111222 667777777554 588899877643322111 111
Q ss_pred cEEEEEEecCCCCEEEEEeCC
Q 007431 577 VCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 577 ~V~~v~~sp~~~~~l~tgg~D 597 (604)
....+.+ ++.+++.||.+
T Consensus 236 ~~~~~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL---VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE---TTEEEEEEEEE
T ss_pred ceeEEEE---CCEEEEECCcc
Confidence 1122222 45677778764
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.43 E-value=0.61 Score=47.39 Aligned_cols=234 Identities=11% Similarity=0.124 Sum_probs=119.8
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe-------cCCCCceeeEEEccC---CCEEEEE-EC----
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCND---GTKFLTA-SY---- 377 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~-------~~h~~~V~~l~fspd---g~~L~s~-s~---- 377 (604)
-.....|+|.|+ ++.|+.+...|.|++++. .+.....+ .........|+|+|+ +..|..+ +.
T Consensus 17 l~~P~~i~~~pd-G~~l~V~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFLPD-NHGMLITLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEECST-TCCEEEEETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEcCC-CCEEEEEeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 345789999999 773445567899999985 33321111 112345689999995 4444444 32
Q ss_pred ---CCcEEEEECCCC--c--EEE----Eee----CCCcceEEEEccCCCCCcEEEEEEc-------------CCeEEEEe
Q 007431 378 ---DKNIKYWDTETG--Q--VIR----TFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWD 429 (604)
Q Consensus 378 ---Dg~I~vWD~~t~--~--~i~----~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~iwD 429 (604)
...|..|++..+ . ... .+. ..|....+.+.+++ .++++.+. .|.|.-++
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG---YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS---EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC---cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666666533 1 111 111 12334567777743 34444322 25777777
Q ss_pred CCCC--------------ceEEEEcCcCCceeEEEEeC-CCCEEEEEeC-CCcEEEEECCCCeE----------------
Q 007431 430 MNTK--------------EITQEYDQHLGAVNTITFVD-SNRRFVTSSD-DKSLRVWEFGIPVV---------------- 477 (604)
Q Consensus 430 ~~s~--------------~~~~~~~~h~~~V~~i~~sp-~~~~l~sgs~-Dg~I~iwdl~~~~~---------------- 477 (604)
.... ..+..+ ++ .....++|.| .++++++-.. ++.=.|.-+..+..
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 6532 111111 22 3467899999 5544443221 11112211111100
Q ss_pred ---------------EEEeecCCCCcccEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007431 478 ---------------IKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 478 ---------------~~~~~~~~~~~v~~l~~sp-------~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
+..+ .+......+.+.. ++.++++....+.|...++...........+.. ....
T Consensus 249 ~~~~~~~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~r 324 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD--RGQR 324 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGG--GCCC
T ss_pred cCcccCCCCCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccC--CCCc
Confidence 0000 1122455666653 466666666678888888765432221111111 1245
Q ss_pred eEEEEEcCCCCEEEEEc-CCCcEE
Q 007431 536 ACQVNFSPDGRFVMSGD-GEGKCW 558 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs-~dG~I~ 558 (604)
+..+++.|||.+.++.+ .+|.|+
T Consensus 325 p~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 325 IRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp EEEEEECTTSCEEEEECSTTEEEE
T ss_pred eeEEEECCCCcEEEEEeCCCCEEE
Confidence 77899999998766544 345443
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.051 Score=55.05 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=107.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCC-CCceeeEEE--cc-CCCEEEEE-ECCCcEEEEECCCCcEEEEeeCCCc
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISF--CN-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKI 400 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-~~~V~~l~f--sp-dg~~L~s~-s~Dg~I~vWD~~t~~~i~~~~~~~~ 400 (604)
+.+++.++.||.|.-.|. .+++.+.++... ..++....- .+ ++..++.. +.||.|..++..+|.....+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 458899999999999998 689988888654 122221110 01 22333333 5899999999999876665543221
Q ss_pred ----ceEEEEccCC------CCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC--Cc-----eeEEEEe-----CCCCEE
Q 007431 401 ----PYVVKLNPDD------DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GA-----VNTITFV-----DSNRRF 458 (604)
Q Consensus 401 ----~~~~~~~~~~------~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~--~~-----V~~i~~s-----p~~~~l 458 (604)
+....-.|-- .....+++|+.+|.+...|+++|+.+..+.... +. ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1111111100 023578999999999999999999999986432 10 1122111 123456
Q ss_pred EEEeCCCcEEEEECCCCeE----EEEeecCCCC-cc-cEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 459 VTSSDDKSLRVWEFGIPVV----IKYISEPHMH-SM-PSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~-~v-~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+.+..+..+.+.+ +++.. .......... .+ .....+.++.+ ++++.||.|..+|..++..+.
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 6666666665554 22210 0011000000 00 00011224555 457889999999988776543
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.29 E-value=0.19 Score=50.85 Aligned_cols=220 Identities=11% Similarity=0.102 Sum_probs=104.8
Q ss_pred CCCEEEEEECC-CcEEEEECCC--CcEEEE--ee-CCCcceEEEEccCCCCCcEEEEEEc-C---------CeEEEEeCC
Q 007431 368 DGTKFLTASYD-KNIKYWDTET--GQVIRT--FS-TGKIPYVVKLNPDDDKQNILLAGMS-D---------KKIVQWDMN 431 (604)
Q Consensus 368 dg~~L~s~s~D-g~I~vWD~~t--~~~i~~--~~-~~~~~~~~~~~~~~~~~~~lvsg~~-d---------g~I~iwD~~ 431 (604)
++.+++.|+.+ ..+.++|+.+ .+.... +. .......+... ++.+++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE----CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 55666666543 4688888864 333222 11 11122222222 2256777765 2 468999998
Q ss_pred CCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 007431 432 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDD---------------------------------------KSLRVWE 471 (604)
Q Consensus 432 s~~~~~~~~~h-~~~V~~i~~sp~~~~l~sgs~D---------------------------------------g~I~iwd 471 (604)
+.+-...-... .......+...++++++.|+.+ ..+.+||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 87533321111 1111122222467788888754 5789999
Q ss_pred CCCCeEEEEeecCCCCcc-cEEEEcCCCCEEEEEEc------CCeEEEEEc--CCceeecccccccCcccccceEEEEEc
Q 007431 472 FGIPVVIKYISEPHMHSM-PSISLHPNTNWLAAQSL------DNQILIYST--RERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v-~~l~~sp~g~~l~s~s~------Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
..+..-...-..+..... .+++.. ++++++.|+. ...+.+|++ .+.. ......+......... .+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~--~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGG--FAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSC--EEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccc--eEEE
Confidence 987754443322222222 333333 5666666653 345777876 3221 1111111111000011 1222
Q ss_pred CCCCEEEEEcCC----------------------CcEEEEeCCCCe--eEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007431 543 PDGRFVMSGDGE----------------------GKCWFWDWKSCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 543 pdg~~L~sgs~d----------------------G~I~iwd~~t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
.++++++.|+.+ ..+.+||+.+.+ .+..+........++.+ ++.+++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCC
Confidence 356677777632 257789987643 33333322222122222 567888888654
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.21 E-value=1.4 Score=45.67 Aligned_cols=231 Identities=12% Similarity=0.155 Sum_probs=137.7
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCC
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK 399 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t-~~~i~~~~~~~ 399 (604)
.+|. .+.||.-. ..++.|+|+ +....+..+.- ...|.--.|-.+. .|+..+ +..|.-|+++. ..+.+.|..+.
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl-e~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 73 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp ECSS-SSCEEEEE-TTEEEEEET-TTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eCCC-CcEEEEec-CCeEEEEch-HHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 5666 55555554 688999999 56666666653 3456666676543 455444 46899999974 34555554432
Q ss_pred ---cceEEEEccCCCCCcEEEEEE------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC---CEEEEEeC---C
Q 007431 400 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN---RRFVTSSD---D 464 (604)
Q Consensus 400 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~---~~l~sgs~---D 464 (604)
...++.+..+.+..-++++|- -.|.+.+|....+ ..+.+.+|.+.-..+.+..+. ..|+.+.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 244566666655545555554 2478899988755 567788887666555443221 23444443 2
Q ss_pred CcEEEEECCCC--------eEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007431 465 KSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 465 g~I~iwdl~~~--------~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
+.++|.++..+ +....+..+ ...-..++.+++....+..-+.-|.|.+||+.++..+..-+ +..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-----Is~ 300 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-----ISG 300 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-----CCS
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-----ccC
Confidence 78999998543 112222212 23335678888888899999999999999999987764332 222
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
..+...+.+....-+++....|.|.--.+.
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 333323333333334444455555544443
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.05 E-value=1.5 Score=44.44 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=121.0
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee--------CCCcceEEEEccCCC-CCcEEEEEEc-------
Q 007431 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--------TGKIPYVVKLNPDDD-KQNILLAGMS------- 421 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~--------~~~~~~~~~~~~~~~-~~~~lvsg~~------- 421 (604)
...+.|+|.|+|+.|+++...|.|++++.. +.....+. ......-+++.|+-. ++.++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356899999999844555678999999853 33211111 112234566666310 2234444332
Q ss_pred CCeEEEEeCCCC--ce--EEE-EcC------cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCe-
Q 007431 422 DKKIVQWDMNTK--EI--TQE-YDQ------HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV- 476 (604)
Q Consensus 422 dg~I~iwD~~s~--~~--~~~-~~~------h~~~V~~i~~sp~~~~l~sgs~D-------------g~I~iwdl~~~~- 476 (604)
...|..|++... .+ ... +.. .......|.|.|++.++++.+.. |.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235777766432 11 111 111 11124679999999766665442 356666654220
Q ss_pred -----------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEcCCceee----------------c-----
Q 007431 477 -----------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQL----------------N----- 522 (604)
Q Consensus 477 -----------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg--~I~iwd~~~~~~~----------------~----- 522 (604)
....+..++ .....++|+|....|.++.... .=.|.-+..+... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 011111122 3467899999433444443331 1122111111100 0
Q ss_pred ccccccCc----ccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCcEEEEEEecCCC
Q 007431 523 KKKRFAGH----IVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 523 ~~~~~~~~----~~~~~v~~l~~sp-------dg~~L~sgs~dG~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~ 588 (604)
....+... ......+.+.|.. +|.++++.-..+.|...++..++...... .....+..+++.| ++
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DG 334 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TS
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CC
Confidence 00000000 0012355677753 57777777778888888887765443322 2234789999999 56
Q ss_pred CEEEEEe-CCCcE
Q 007431 589 SKVATCG-WDGLI 600 (604)
Q Consensus 589 ~~l~tgg-~DG~I 600 (604)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 5555433 45554
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.04 E-value=0.11 Score=53.13 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=87.0
Q ss_pred ceeEEEEeCCCCEEEEE------------eCCCcEEEEECCCC--eEEE-EeecC----CCCcccEEEEcC--CCC-EEE
Q 007431 445 AVNTITFVDSNRRFVTS------------SDDKSLRVWEFGIP--VVIK-YISEP----HMHSMPSISLHP--NTN-WLA 502 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sg------------s~Dg~I~iwdl~~~--~~~~-~~~~~----~~~~v~~l~~sp--~g~-~l~ 502 (604)
..-.+.+.|+|..++++ ..+|.|.++|+... .... .+... .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566667766555554 26899999998732 2211 12111 123566777765 343 344
Q ss_pred EE-Ec--CCeEEEEEcCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-----------------CCCcEEEEe
Q 007431 503 AQ-SL--DNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----------------GEGKCWFWD 561 (604)
Q Consensus 503 s~-s~--Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-----------------~dG~I~iwd 561 (604)
++ .. +.+|.+|++... ........+.+. .-...+.+.+.++|++.++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 44 33 467888876543 222223334333 234577899999999888765 135566666
Q ss_pred CCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007431 562 WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 562 ~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.. +...... .-...+.++|+|++..+.++-+..+.|..||
T Consensus 210 ~~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 210 PN--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp TT--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CC--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 53 3222222 2234689999994444444445567777764
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.03 E-value=0.27 Score=49.67 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=112.1
Q ss_pred CCEEEEEECC-CcEEEEecCCCCeeeEEecCCC--CceeeEEEccCCCEEEEEEC-C---------CcEEEEECCCCcEE
Q 007431 326 GHLILSAGMD-TKVKIWDVVNSGKCMRTYMGHS--KAVRDISFCNDGTKFLTASY-D---------KNIKYWDTETGQVI 392 (604)
Q Consensus 326 g~~L~sgs~D-g~I~IWd~~~~~~~~~~~~~h~--~~V~~l~fspdg~~L~s~s~-D---------g~I~vWD~~t~~~i 392 (604)
+.+++.|+.+ ..+.++|+......-..+..-. ......+..-++.+++.|+. + ..+.+||+.+.+-.
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 5666766643 4688888732112222222111 11111112225677777765 2 46889999887654
Q ss_pred EEeeCC---CcceEEEEccCCCCCcEEEEEEcC---------------------------------------CeEEEEeC
Q 007431 393 RTFSTG---KIPYVVKLNPDDDKQNILLAGMSD---------------------------------------KKIVQWDM 430 (604)
Q Consensus 393 ~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~d---------------------------------------g~I~iwD~ 430 (604)
..-... .....+.. . ++.+++.|+.+ ..+.+||+
T Consensus 100 ~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV-H---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp ECSCCCSSCCSSEEEEE-E---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred ECCCCCCcccccceEEE-E---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 433222 11222222 2 23677888754 57999999
Q ss_pred CCCceEEEEcCcC-Cce-eEEEEeCCCCEEEEEeC------CCcEEEEEC--CCCeEEEEeecCCCC-cccEEEEcCCCC
Q 007431 431 NTKEITQEYDQHL-GAV-NTITFVDSNRRFVTSSD------DKSLRVWEF--GIPVVIKYISEPHMH-SMPSISLHPNTN 499 (604)
Q Consensus 431 ~s~~~~~~~~~h~-~~V-~~i~~sp~~~~l~sgs~------Dg~I~iwdl--~~~~~~~~~~~~~~~-~v~~l~~sp~g~ 499 (604)
.+.+-...-.... ... .+++.. ++.+++.|+. ...+.+||+ .+..-......+... .....+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 8875433321111 111 233333 5666676653 345777887 333322211111111 112222333566
Q ss_pred EEEEEEcC----------------------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--
Q 007431 500 WLAAQSLD----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-- 555 (604)
Q Consensus 500 ~l~s~s~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-- 555 (604)
+++.|+.+ ..+.+||+.+.. ......+.... ..... ...++++++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~--~~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGR--AYGVS--LPWNNSLLIIGGETAGG 329 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCC--BSSEE--EEETTEEEEEEEECGGG
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCc--cccee--EEeCCEEEEEeeeCCCC
Confidence 77777632 247788887542 11111111111 11111 223677878787543
Q ss_pred ----cEEEEeCCCCeeEEEE
Q 007431 556 ----KCWFWDWKSCKVFRTL 571 (604)
Q Consensus 556 ----~I~iwd~~t~~~~~~l 571 (604)
.|.++++++++.+...
T Consensus 330 ~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CEEEEEEEEEC-CCSCEEEC
T ss_pred CEeeeEEEEEEcCcEeEeee
Confidence 3666788877765443
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.91 E-value=0.2 Score=51.86 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=88.2
Q ss_pred CeEEEEeCCCCceEEEEcCc----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe------------EEEEeecC--
Q 007431 423 KKIVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------------VIKYISEP-- 484 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h----~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~------------~~~~~~~~-- 484 (604)
+.||.-++.....-+.+... ...|..+..+|+|++|+..+. ..|.|..+..+. ..+.+...
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 66666666543333333322 236788999999999988864 578888886221 12222221
Q ss_pred ---CCCcccEEEEcCC---CCEEEEEEcCCeEEEEEcCCceeecc-cc----cccCcccccceEEEEEcCCCCEEEEEc-
Q 007431 485 ---HMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRERFQLNK-KK----RFAGHIVAGYACQVNFSPDGRFVMSGD- 552 (604)
Q Consensus 485 ---~~~~v~~l~~sp~---g~~l~s~s~Dg~I~iwd~~~~~~~~~-~~----~~~~~~~~~~v~~l~~spdg~~L~sgs- 552 (604)
...+|..+.|||- +..|++-..|+.|++||+........ +. .+........+.+++|+.+|-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999995 56899999999999999976321111 11 111111114577899999888777754
Q ss_pred -CCCcEEEE
Q 007431 553 -GEGKCWFW 560 (604)
Q Consensus 553 -~dG~I~iw 560 (604)
..|.|+-.
T Consensus 200 t~~GDIYAl 208 (452)
T 3pbp_A 200 TEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEE
T ss_pred CCCCCEEEE
Confidence 78888754
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.89 E-value=2.4 Score=45.40 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=136.9
Q ss_pred EEEEEECCCcEEEEecCCCCeeeEEecCC-------------------------CCcee--eEEEcc---CCCEEEEEEC
Q 007431 328 LILSAGMDTKVKIWDVVNSGKCMRTYMGH-------------------------SKAVR--DISFCN---DGTKFLTASY 377 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-------------------------~~~V~--~l~fsp---dg~~L~s~s~ 377 (604)
.+.||+..|.|+|+-+ .+.+.+..+.-. .+... .+++.. ||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~-PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEE-TTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeecCcCceEEEEec-CCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4677888888888888 566666555311 11111 233332 6777877764
Q ss_pred -CCcEEEEECCCCcEEEEeeCCCc--ceEEEEccCCCCCcEEEEEEc-------CCeE------------EEEeCCCCce
Q 007431 378 -DKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS-------DKKI------------VQWDMNTKEI 435 (604)
Q Consensus 378 -Dg~I~vWD~~t~~~i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~-------dg~I------------~iwD~~s~~~ 435 (604)
+..|...++...++-..+..... ...+++... .+..++++++. ||.. ...|..+.+.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~-p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV-PHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCccccccccc-CCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 56788889998887766655443 333444321 23345665553 2221 1123333333
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCC---------------cEEEE-------------------------ECCC-
Q 007431 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDK---------------SLRVW-------------------------EFGI- 474 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg---------------~I~iw-------------------------dl~~- 474 (604)
...+.- .+....+...+++.+.++.+.+. .+.++ |.+.
T Consensus 230 ~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 230 AFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 322211 22233344566777777665321 23444 4333
Q ss_pred ---C-eEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee------cccccc-cCcccccceEEEEEc
Q 007431 475 ---P-VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL------NKKKRF-AGHIVAGYACQVNFS 542 (604)
Q Consensus 475 ---~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~------~~~~~~-~~~~~~~~v~~l~~s 542 (604)
. .....+ +...+...+.++|+|+++++++ .+.++.++|+...... ...... ......-.....+|.
T Consensus 309 ~~~~~~~~~~i--P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 309 DGKDSKFTRYV--PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp TTBCCSSEEEE--EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred cccCCceEEEE--eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 1 122222 2334567789999999988876 5788999998742211 000111 111122334568999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCC----------eeEEEEecCCCc
Q 007431 543 PDGRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGV 577 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~----------~~~~~l~~h~~~ 577 (604)
++|....+-.-|..|.-|++... ..+..+..|-.+
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred CCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC
Confidence 99966666778999999998653 567777777654
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.86 E-value=0.53 Score=48.77 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=93.3
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC---CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc-----
Q 007431 452 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----- 523 (604)
Q Consensus 452 sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~----- 523 (604)
+.++..++.+- ++.||.-++......+.+..++ ...+..+..+|+|.+||..+ +..|.|..+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34555555544 4778877776444444444442 33688899999999999876 66789988873321110
Q ss_pred --c--ccccC----cccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCCC--eeEEEEe---------cCCCcEEEE
Q 007431 524 --K--KRFAG----HIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKSC--KVFRTLK---------CHEGVCIGC 581 (604)
Q Consensus 524 --~--~~~~~----~~~~~~v~~l~~spd---g~~L~sgs~dG~I~iwd~~t~--~~~~~l~---------~h~~~V~~v 581 (604)
. +.+.- ......|..+.|+|- |..|++-..|+.|++||+... ++. .++ .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 0 01110 112466889999994 668999999999999999752 222 332 122568899
Q ss_pred EEecCCCCEEEEEe--CCCcEE
Q 007431 582 EWHPLEQSKVATCG--WDGLIK 601 (604)
Q Consensus 582 ~~sp~~~~~l~tgg--~DG~I~ 601 (604)
+|.+ ++-.|.... ..|-|.
T Consensus 186 ~Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 186 EFSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EECT-TSSCEEEEECTTSCEEE
T ss_pred EEcC-CCcEEEEEecCCCCCEE
Confidence 9998 565566644 667764
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.57 E-value=0.84 Score=48.16 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=62.6
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE--EeecC-----CCCcccEEEEcCC---CCEEEEEEc-----
Q 007431 442 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP-----HMHSMPSISLHPN---TNWLAAQSL----- 506 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~--~~~~~-----~~~~v~~l~~sp~---g~~l~s~s~----- 506 (604)
.......|+|.|+++++++-...+.|++++...+.... .+... ....+..|+|+|+ +.+|.++..
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34566799999999877776554578888765443322 22211 2345678999995 555555443
Q ss_pred --------CCeEEEEEcCCc--ee--ec-ccccccCcccccceEEEEEcCCCCEEEEEc
Q 007431 507 --------DNQILIYSTRER--FQ--LN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 507 --------Dg~I~iwd~~~~--~~--~~-~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
...|..|+.... .. .. .+..+... .......|+|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 235666665321 10 00 11111111 123456899999998777644
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.39 E-value=2.4 Score=41.96 Aligned_cols=208 Identities=6% Similarity=0.019 Sum_probs=113.4
Q ss_pred CCEEEEEE-C-CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC--------------CcEEEEECCCC
Q 007431 326 GHLILSAG-M-DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--------------KNIKYWDTETG 389 (604)
Q Consensus 326 g~~L~sgs-~-Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D--------------g~I~vWD~~t~ 389 (604)
+..|+-.. . ++.|...+. ++.....+... .+--++++|.+|+-+... ..|+..++..+
T Consensus 25 g~~iy~~n~~d~~~ly~~~~--dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNI--DGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEET--TSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred CCEEEEEeCCCCceEEEEcC--CCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 44554443 2 344444444 45444444322 234567889988877653 36777888776
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEE---EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC
Q 007431 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAG---MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK 465 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg---~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg 465 (604)
+....... . ...+.+.+. .+.++- .....|+..++...... .+..+.. ..++++++.|+-.+. ..
T Consensus 99 ~~~~l~~~--~--~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 99 GSTVLDPD--P--CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCEEEECS--C--EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTC
T ss_pred cceEeecC--C--ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 54332221 1 123444332 344443 34567777787654433 3333322 345677888876665 67
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007431 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
.|.+.++....... +... .. ...++|++.+|+-....+ .|..-++....... +.. ..+ ..|+|
T Consensus 168 ~Iy~~~l~g~~~~~-l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~----Lt~----~~~--~~~~~ 232 (302)
T 3s25_A 168 QLYRYDTASQSEAL-FYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV----LTE----ANI--EHYNV 232 (302)
T ss_dssp CEEEEETTTTEEEE-EECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE----CSC----SCE--EEEEE
T ss_pred eEEEEECCCCCEEE-EeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE----EeC----CCc--ceEEE
Confidence 88888887665433 3221 12 234669999988877553 56666665443221 111 112 34788
Q ss_pred CCCEEEEEc--CCCcEEEEeCCCC
Q 007431 544 DGRFVMSGD--GEGKCWFWDWKSC 565 (604)
Q Consensus 544 dg~~L~sgs--~dG~I~iwd~~t~ 565 (604)
++.+|+-++ ..+.|..-++...
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCEEEEEECCCCcEEEEEECCCC
Confidence 888887653 2456777776543
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.37 E-value=0.58 Score=46.39 Aligned_cols=145 Identities=10% Similarity=0.079 Sum_probs=75.6
Q ss_pred CCCEEEEEECC-------CcEEEEECCCCcEEEEeeCCCc--ceEEEEccCCCCCcEEEEEEc------CCeEEEEeCCC
Q 007431 368 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNT 432 (604)
Q Consensus 368 dg~~L~s~s~D-------g~I~vWD~~t~~~i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s 432 (604)
++..++.|+.+ ..+.+||+.+.+-...-..... ...+.. . ++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H---NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E---TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E---CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 66777777764 3478889888765543222211 112222 2 2356677664 24689999988
Q ss_pred CceEEEEcCcCC-ceeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007431 433 KEITQEYDQHLG-AVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 433 ~~~~~~~~~h~~-~V~~i~~sp~~~~l~sgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
.+-...-..... .-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-..+....-.+++. -++++++.|+.
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~ 262 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGF 262 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred CEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCe
Confidence 754332111111 11222332 56777777643 347788987765433221122111222222 25666676664
Q ss_pred C--------------CeEEEEEcCCc
Q 007431 507 D--------------NQILIYSTRER 518 (604)
Q Consensus 507 D--------------g~I~iwd~~~~ 518 (604)
+ ..+.+||+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTTT
T ss_pred eccCCCCceeccceeeeEEEEeCCCC
Confidence 3 34677777653
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.05 E-value=0.86 Score=50.91 Aligned_cols=198 Identities=9% Similarity=0.072 Sum_probs=106.1
Q ss_pred cCCCEEEEEECC----CcEEEEECCCCcEEEEe-e-------CCCcceEEEEccCCCCCcEEEEEEcC------CeEEEE
Q 007431 367 NDGTKFLTASYD----KNIKYWDTETGQVIRTF-S-------TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQW 428 (604)
Q Consensus 367 pdg~~L~s~s~D----g~I~vWD~~t~~~i~~~-~-------~~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iw 428 (604)
.++..++.|+.+ ..+.+||..+++....- . .......+..... ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456677777753 46888998887655433 2 1112223333220 22577777653 358899
Q ss_pred eCCCCceEEEEcCcCC-ceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCeEEEEee---cC-CCCcccEEEEcCC-CCE
Q 007431 429 DMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYIS---EP-HMHSMPSISLHPN-TNW 500 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~-~V~~i~~sp~~~~l~sgs~Dg--~I~iwdl~~~~~~~~~~---~~-~~~~v~~l~~sp~-g~~ 500 (604)
|+.+.+-...-..... .-.+++...++..++.|+.++ .+.+||..+..-..... .+ ......++.+..+ +++
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 9988643322111111 112333334788888887654 79999998776433221 11 1122233555555 667
Q ss_pred EEEEEcC-------CeEEEEEcCCcee-----ecccccccCcccccceEEEEEcCCCCEEEEEcC--------CCcEEEE
Q 007431 501 LAAQSLD-------NQILIYSTRERFQ-----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--------EGKCWFW 560 (604)
Q Consensus 501 l~s~s~D-------g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~--------dG~I~iw 560 (604)
++.|+.+ +.+.+||+.+..- ........ . ....-..++...++++++.|+. ...|.+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~-~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-L-FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-G-GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-C-CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 7777652 4688999877541 11111100 0 0111112233333677777764 3469999
Q ss_pred eCCCCeeE
Q 007431 561 DWKSCKVF 568 (604)
Q Consensus 561 d~~t~~~~ 568 (604)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99876543
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.90 E-value=1.9 Score=40.58 Aligned_cols=142 Identities=11% Similarity=-0.047 Sum_probs=79.1
Q ss_pred cEEEEEEcCCeEEEEeCCCCc------eEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe------EEEE
Q 007431 414 NILLAGMSDKKIVQWDMNTKE------ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKY 480 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~------~~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~------~~~~ 480 (604)
.+|++...| +|+.=...++. ....+-. --..+..++|+|++.+.++ .+|.|+-.+..+.. .-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 456666666 66665554443 1122211 1347889999999887666 56766555543311 1122
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc--cccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007431 481 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
+-...-....++.|.|+|.+.++ .||.|+-++..+.....-.. ...+...-..+..|.|.|+|.+.++. +|.++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 22112222578999999988877 67988877643211110000 00000011346789999999877766 77765
Q ss_pred EEeC
Q 007431 559 FWDW 562 (604)
Q Consensus 559 iwd~ 562 (604)
-+..
T Consensus 158 r~~~ 161 (236)
T 1tl2_A 158 KALP 161 (236)
T ss_dssp EECC
T ss_pred ecCC
Confidence 4433
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.82 E-value=1.2 Score=45.01 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE--ee---cCCCCcccEEEEcCC---CCEEEEE-E--
Q 007431 437 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY--IS---EPHMHSMPSISLHPN---TNWLAAQ-S-- 505 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~--~~---~~~~~~v~~l~~sp~---g~~l~s~-s-- 505 (604)
..+-........|+|.|++++|++-...|.|++++...+..... +. .........|+++|+ +.+|.+. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34444556778999999998777776689999998655443221 11 113456789999995 3445443 2
Q ss_pred cCCeEEEEEcCCce----eecc----cccccCcccccceEEEEEcCCCCEEEEEcC-------------CCcEEEEeCCC
Q 007431 506 LDNQILIYSTRERF----QLNK----KKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------------EGKCWFWDWKS 564 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~----~~~~----~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-------------dG~I~iwd~~t 564 (604)
.++.|.-|.+.... .+.. +..+.. ........|.|.|||.+.++.+. .|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 34566667665411 1100 111111 01122346999999987776432 35566556442
Q ss_pred C--------eeEEEEecCCCcEEEEEEecCCCCEEE
Q 007431 565 C--------KVFRTLKCHEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 565 ~--------~~~~~l~~h~~~V~~v~~sp~~~~~l~ 592 (604)
. ....--.+|.. ...++|+| ++.+.+
T Consensus 184 ~ip~~nPf~~~~i~a~G~RN-p~Gla~dp-~G~L~~ 217 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRN-VQGLAWDD-KQRLFA 217 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSB-CCEEEECT-TCCEEE
T ss_pred CccCCCCCCCCeEEeeCCCC-cceEEECC-CCCEEE
Confidence 2 11111124544 46899999 555444
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.54 E-value=1.4 Score=49.26 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=84.6
Q ss_pred cEEEEEEcC----CeEEEEeCCCCceEEEE-c------CcCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCC
Q 007431 414 NILLAGMSD----KKIVQWDMNTKEITQEY-D------QHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIP 475 (604)
Q Consensus 414 ~~lvsg~~d----g~I~iwD~~s~~~~~~~-~------~h~~~V~~i~~sp-~~~~l~sgs~D------g~I~iwdl~~~ 475 (604)
.+++.|+.+ ..+.+||+.+++....- . .....-.+++..+ ++..++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 567777643 46889999887644433 1 1111223444444 67777887643 35888998876
Q ss_pred eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEcCCceeeccccc---ccCcccccceEEEEEcCC-CCEEE
Q 007431 476 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKR---FAGHIVAGYACQVNFSPD-GRFVM 549 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~l~~spd-g~~L~ 549 (604)
.-...-..+....-.+++...++++++.|+.++ .+.+||..+..=. .... .... ......+.+..+ +++++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~--r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQN--SLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGS--CCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCc--ccceeEEEEeCCCCEEEE
Confidence 543332222222233444434788888887665 6899998765321 1111 1111 111223455555 66777
Q ss_pred EEcC--C-----CcEEEEeCCCCe
Q 007431 550 SGDG--E-----GKCWFWDWKSCK 566 (604)
Q Consensus 550 sgs~--d-----G~I~iwd~~t~~ 566 (604)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 458899988766
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.45 E-value=5.7 Score=41.66 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE--EeeC-------CCcceEEEEccCCCCCcEEEEEEc------
Q 007431 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFST-------GKIPYVVKLNPDDDKQNILLAGMS------ 421 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~--~~~~-------~~~~~~~~~~~~~~~~~~lvsg~~------ 421 (604)
-...+.|+|.|+|+++++-...+.|++++..++.... .+.. .....-+++.|+-.....|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877665444578888876565432 2221 122235777775322234444432
Q ss_pred -------CCeEEEEeCCCC-------ceEE-EEcC-cCCceeEEEEeCCCCEEEEEeC
Q 007431 422 -------DKKIVQWDMNTK-------EITQ-EYDQ-HLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 422 -------dg~I~iwD~~s~-------~~~~-~~~~-h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
...|.-|++... +.+. .+.. .......|.|.|+|.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 1111 1221 1234689999999998887654
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.91 E-value=1.7 Score=51.67 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=111.6
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCC
Q 007431 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFSTGK 399 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~-~~i~~~~~~~ 399 (604)
.+|. .+.||.-. ..++.|+|+ .....+..+.- ...|.--.|-... .|+..+ +..|.-|++... .++..|..+.
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl-~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeeh-HHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 4555 45555443 678999999 45555554432 3456666665443 444443 367999999642 3333332211
Q ss_pred ---cceEEEEccCCCCCcEEEEEE------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC--C-CCEEEEEeC---C
Q 007431 400 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--S-NRRFVTSSD---D 464 (604)
Q Consensus 400 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp--~-~~~l~sgs~---D 464 (604)
...++....+.+..-++++|- -.|.+.+|....+ ..+.+.+|.+.-..+.+.. . ...|+.+.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 233455555555444555553 3588899987654 4456667766554444431 1 123332221 2
Q ss_pred CcEEEEECCCC-----eE---EEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec
Q 007431 465 KSLRVWEFGIP-----VV---IKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 465 g~I~iwdl~~~-----~~---~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+.++|.++..+ .. ...+..+ ...-..++..++....+...+.-|.|.+||+.++..+.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 68889888543 10 0111111 12334567778888888889999999999999987663
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.80 E-value=2.7 Score=39.53 Aligned_cols=171 Identities=9% Similarity=0.041 Sum_probs=89.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCe------eeEEecCC--CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE------
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGK------CMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV------ 391 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~------~~~~~~~h--~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~------ 391 (604)
..+|++...| +|+.=... .+. ...++ ++ =..+.+++|+|+|.+.++ .+|.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P-~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYP-QNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCC-CSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCC-CCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 4556666666 55544331 221 12222 22 247889999999986666 667766666544211
Q ss_pred EEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-------EEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007431 392 IRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-------TQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 392 i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-------~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
-..+-.. +.-..+.+.+++ .+.++ .||.|+-++..+... ...-..--..+..|.+.|+|.+.++.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G---~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG---YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS---CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred ccEecccccccceEEEECCCC---CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1111110 111344455433 34444 679999888643211 11111222567899999999877777
Q ss_pred CCCcEEEEECCCCe------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 463 DDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
|+.++-+...... ....+....-...+.+.|.+++.+.++. ++.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 6765432221110 1111221233344556788888777766 6643
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.31 E-value=7.9 Score=39.36 Aligned_cols=265 Identities=10% Similarity=0.042 Sum_probs=122.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCC--cEEEEecCCCCeeeEEecC--------------CCCceeeEEEcc-C-CCEEEE
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDT--KVKIWDVVNSGKCMRTYMG--------------HSKAVRDISFCN-D-GTKFLT 374 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg--~I~IWd~~~~~~~~~~~~~--------------h~~~V~~l~fsp-d-g~~L~s 374 (604)
...|.+|++.|.+...|..++..| -..||-....++.-..+.. +...|.+|++.| + ...|..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 356999999983334444444444 0123333233433332221 113577899987 2 455666
Q ss_pred EECCCcEEEEECCCCcEEEEeeC--------------------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc
Q 007431 375 ASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 434 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~ 434 (604)
++..+.|...+ ..++.-..+.. ......+.+.+.. ...++++..++.|...+- .++
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~--~~~l~vg~~~ggl~~s~D-gG~ 209 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD--PKHLYIGMSSGGVFESTD-AGT 209 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC--TTCEEEEEETBEEEEESS-TTS
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC--CCEEEEEECCCCEEEECC-CCC
Confidence 66555554442 22322222211 0112344444422 233555555555554432 222
Q ss_pred eEEEEcC-----c--------CCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----CcccEEEEcC
Q 007431 435 ITQEYDQ-----H--------LGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM----HSMPSISLHP 496 (604)
Q Consensus 435 ~~~~~~~-----h--------~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~~v~~l~~sp 496 (604)
....+.. + ...+.+|.+.|. ...|+.+...+ |...+- .+.....+..... ..+.++.++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 2222211 0 124788999886 35666666544 444432 2333333321111 2345677876
Q ss_pred C-CCEEEEEEc-----------CCeEEEEEcCCc-eeecccc-cccCcc--cccceEEEEEcCC-CCEEEEEcCCCcEEE
Q 007431 497 N-TNWLAAQSL-----------DNQILIYSTRER-FQLNKKK-RFAGHI--VAGYACQVNFSPD-GRFVMSGDGEGKCWF 559 (604)
Q Consensus 497 ~-g~~l~s~s~-----------Dg~I~iwd~~~~-~~~~~~~-~~~~~~--~~~~v~~l~~spd-g~~L~sgs~dG~I~i 559 (604)
. ...|.++.. ++...+|...++ ....... .+.... .......++++|. ...|+.++..+.|+.
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 3 344555432 233455554432 2221111 111100 0011134778874 345667766666654
Q ss_pred EeCCCCeeEEEEecCCCcEEEEEEe
Q 007431 560 WDWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 560 wd~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
-. ..++....+..+-..+.+++|.
T Consensus 368 S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 368 SA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp ES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EC-CCCCCceEcccCCCCeeEEEEe
Confidence 33 4555555565555567788775
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.94 E-value=8.6 Score=38.74 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=123.2
Q ss_pred ecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE--ee-----CCCcceEEEEccCCCCCcEEEEE---EcC
Q 007431 353 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FS-----TGKIPYVVKLNPDDDKQNILLAG---MSD 422 (604)
Q Consensus 353 ~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~--~~-----~~~~~~~~~~~~~~~~~~~lvsg---~~d 422 (604)
+...-...+.|+|.|+|++|++--..|.|++++..+++.... +. ......-+++.|+-.....|++. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333445678999999998777665589999998766654222 21 12234567777641111233332 245
Q ss_pred CeEEEEeCCCC----------ceE-EEEcC-cCCceeEEEEeCCCCEEEEEeC-------------CCcEEEEECCCCe-
Q 007431 423 KKIVQWDMNTK----------EIT-QEYDQ-HLGAVNTITFVDSNRRFVTSSD-------------DKSLRVWEFGIPV- 476 (604)
Q Consensus 423 g~I~iwD~~s~----------~~~-~~~~~-h~~~V~~i~~sp~~~~l~sgs~-------------Dg~I~iwdl~~~~- 476 (604)
+.|.-|.+..+ +.+ ..+.. .......|.|.|++.++++.++ .|.|.-.+.....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56777765441 111 12221 1123467999999988777653 2444444443210
Q ss_pred ------EEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceee---------------cccccccCccccc
Q 007431 477 ------VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL---------------NKKKRFAGHIVAG 534 (604)
Q Consensus 477 ------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~~ 534 (604)
....+..++ .....++|+|++.++++-. .++.-.|.-+..+... .....+..+ ..
T Consensus 187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--EA 263 (347)
T ss_dssp TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--TC
T ss_pred CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--CC
Confidence 001122233 3467899999877655432 2222222222221110 000000000 01
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee----EEEEecCCCcEEEEEEecCCCCEEEEEe
Q 007431 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
....++|. +|.+++..-..+.|....+..... ...+.+..+.+.+|+..| ++.++++.+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 23456665 455666666666777777655432 222333446799999999 565555543
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.21 E-value=12 Score=36.73 Aligned_cols=124 Identities=11% Similarity=0.001 Sum_probs=70.4
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe----CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC
Q 007431 423 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS----DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 498 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs----~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g 498 (604)
..|+..++..++....... . +..|++++++|+-.. ....|+..++..... ..+.. +. + ..+++++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~-~~--~--~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKN-HY--L--FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEES-SC--C--CCSEEET
T ss_pred CeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeC-CC--c--eEeeEEC
Confidence 4788888877754433321 1 236677888887665 334566666654332 23322 11 1 3467788
Q ss_pred CEEEEEEc-CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC--CcEEEEeCCCCe
Q 007431 499 NWLAAQSL-DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE--GKCWFWDWKSCK 566 (604)
Q Consensus 499 ~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d--G~I~iwd~~t~~ 566 (604)
+.|+-.+. ..+|.+.++........ +.+. . ...++|++.+|+-.... ..|..-++....
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l---~~~~-----~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALF---YDCN-----C-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEE---ECSC-----E-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEE---eCCC-----c-cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 88887665 57788888776543211 2221 1 12356888888765533 356666665443
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.42 E-value=21 Score=38.22 Aligned_cols=230 Identities=8% Similarity=0.125 Sum_probs=132.2
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEeeCCCcc----------------------------eEEEEccCCCCCcEEEEEE-c
Q 007431 371 KFLTASYDKNIKYWDTETGQVIRTFSTGKIP----------------------------YVVKLNPDDDKQNILLAGM-S 421 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~----------------------------~~~~~~~~~~~~~~lvsg~-~ 421 (604)
.|.||+..|.|+|+-+-+++.+..+..-... ..+.+.--.-++.+|++.. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4778899999999999999988876421100 0111111111234455544 5
Q ss_pred CCeEEEEeCCCCceEEEEcC-cCCceeEEEEe--CCCCEEEEEeC-------CCcEE------------EEECCCCeEEE
Q 007431 422 DKKIVQWDMNTKEITQEYDQ-HLGAVNTITFV--DSNRRFVTSSD-------DKSLR------------VWEFGIPVVIK 479 (604)
Q Consensus 422 dg~I~iwD~~s~~~~~~~~~-h~~~V~~i~~s--p~~~~l~sgs~-------Dg~I~------------iwdl~~~~~~~ 479 (604)
+..|...++...++-+.+.- ....+.++.|. |+..++++++. ||... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 67888888888776555432 45678888886 67778887764 33311 11222222222
Q ss_pred EeecCCCCcccEEEEcCCCCEEEEEEcC---------------CeEEEEEcCC-------c--eeec--ccccccCcc--
Q 007431 480 YISEPHMHSMPSISLHPNTNWLAAQSLD---------------NQILIYSTRE-------R--FQLN--KKKRFAGHI-- 531 (604)
Q Consensus 480 ~~~~~~~~~v~~l~~sp~g~~l~s~s~D---------------g~I~iwd~~~-------~--~~~~--~~~~~~~~~-- 531 (604)
++.. ......+...+++++.++.+.+ ..+.++++.. + ..+. ....+.+..
T Consensus 232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 2211 2234455667788888887753 3466666531 1 1111 111222211
Q ss_pred -----------cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCC------Cee-------EEEEecCCCcEEEEEEecC
Q 007431 532 -----------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKS------CKV-------FRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 532 -----------~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t------~~~-------~~~l~~h~~~V~~v~~sp~ 586 (604)
.......+.++|||+++++++ .+.++.++|+.. .++ ....... -.....+|.+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~- 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDG- 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECS-
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECC-
Confidence 011223578999999988766 578999999874 221 3333332 3457889998
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 007431 587 EQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 587 ~~~~l~tgg~DG~I~vWD 604 (604)
++....|.-.|..|.-||
T Consensus 388 ~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCceEeeeeecceEEEEe
Confidence 555556666899999885
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.08 E-value=5 Score=39.11 Aligned_cols=217 Identities=11% Similarity=0.009 Sum_probs=103.9
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE
Q 007431 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 437 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~ 437 (604)
.|..|+.... +.+.-. ||.|..|-....-.+.. ......+..+..-. .+.++. . ||.|+.|-....-.+.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~----~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN----YHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS----SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC----CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 5677766433 333335 89999997654221110 01111222222221 133444 4 8999999765421111
Q ss_pred EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007431 438 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 438 ~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.-..-...|..|+.... ..+.-. +|.|+.|-......+. +.......|..++.-. .+.+.-. ||.|+.|-...
T Consensus 96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCT
T ss_pred CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCC
Confidence 11111346777776544 333334 8999999765421110 1111223455555432 3333334 89999997654
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007431 518 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
..++..... ....+..++...... ++. .+|.|+.|-....-.+..-......|..++... . ..++. . |
T Consensus 169 ~gqlg~p~~-----~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~-~-h~~al-~-~ 236 (282)
T 3qhy_B 169 FGQTTVPAE-----AQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-W-YSLAL-K-N 236 (282)
T ss_dssp TSTTSCCGG-----GGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-S-CEEEE-E-T
T ss_pred CCCCCCcee-----cCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC-C-EEEEE-E-C
Confidence 332221111 123455566544332 233 589999997654221111011123466666543 2 22333 3 8
Q ss_pred CcEEEe
Q 007431 598 GLIKYW 603 (604)
Q Consensus 598 G~I~vW 603 (604)
|.|..|
T Consensus 237 g~v~~w 242 (282)
T 3qhy_B 237 GKVIAW 242 (282)
T ss_dssp TEEEEE
T ss_pred CEEEEe
Confidence 888887
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.60 E-value=26 Score=35.43 Aligned_cols=269 Identities=10% Similarity=-0.017 Sum_probs=119.5
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEe--cCCCCceeeEEEcc-CCCEEEEEECCC----cEEEEECCCCcEEEEeeCC
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDK----NIKYWDTETGQVIRTFSTG 398 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~L~s~s~Dg----~I~vWD~~t~~~i~~~~~~ 398 (604)
...|+.|...| +.+.+....+.....+ ......|.+|++.| +...|..++..| .|... ...++.-..+...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 34677777777 4444432222222221 12345799999998 333444454444 33332 2333322222111
Q ss_pred -------------C--cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-------------------cCC
Q 007431 399 -------------K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------------------HLG 444 (604)
Q Consensus 399 -------------~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-------------------h~~ 444 (604)
. .+..+.+.+... ...++++...+.|...+-. ++....+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASE-PGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTS-TTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCC-CCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence 0 112234443210 2446666666666655322 222222211 123
Q ss_pred ceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCC------------CCcccEEEEcCC-CCEEEEEEcCCeE
Q 007431 445 AVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH------------MHSMPSISLHPN-TNWLAAQSLDNQI 510 (604)
Q Consensus 445 ~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~------------~~~v~~l~~sp~-g~~l~s~s~Dg~I 510 (604)
.+.+|.+.|. ...|+.+..++.|...+ ..+.....+.... ...+.+|.++|. ...|+++...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5788999873 34444444344343332 2222222221100 124788899986 35666666444 5
Q ss_pred EEEEcCCceeeccccc-ccCcccccceEEEEEcC-CCCEEEEEcC-----------CCcEEEEeCCC-CeeEEEEec-CC
Q 007431 511 LIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSP-DGRFVMSGDG-----------EGKCWFWDWKS-CKVFRTLKC-HE 575 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp-dg~~L~sgs~-----------dG~I~iwd~~t-~~~~~~l~~-h~ 575 (604)
...+- .+.....+.. +... ....+..+.++| +...|+++.. ++...||.... |+....+.. -.
T Consensus 256 ~~s~D-~G~tW~~~~~~l~~~-~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGDAMPRE-VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEET-TTTEEECGGGGSCTT-TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEeCC-CCCcceECCCCCCCC-CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 44432 2222221111 1110 012345678876 3334444421 23344554433 344333321 11
Q ss_pred C------c-EEEEEEecCCCCEEEEEeCCCcEEE
Q 007431 576 G------V-CIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 576 ~------~-V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
. . ...++++|.+...|+.++.++.|.+
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 0 0 1357788755555666666665543
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.18 E-value=38 Score=33.55 Aligned_cols=272 Identities=8% Similarity=-0.017 Sum_probs=133.6
Q ss_pred CCEEEEEECCCcEEEEecCC------CCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEE---CCC------C
Q 007431 326 GHLILSAGMDTKVKIWDVVN------SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD---TET------G 389 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~------~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD---~~t------~ 389 (604)
...+++.+.+|.|+--.+.. .++-+..+. .....+..+........|+.-+..|.+.... +.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 35677888888888655310 001111111 1233455555555556666666677655443 322 2
Q ss_pred cEEEE---eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-------ceEEEEcCcCCceeEEEEeCCCCEEE
Q 007431 390 QVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 390 ~~i~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-------~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
..+.. +..+..+..+.....-.....++..+.+|.|+...+..- .....+.. ...+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 22111 112222222222221123478999999999999876432 11112322 34555555555667788
Q ss_pred EEeCCCcEEEEECC--CCe-------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc----ccc
Q 007431 460 TSSDDKSLRVWEFG--IPV-------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 526 (604)
Q Consensus 460 sgs~Dg~I~iwdl~--~~~-------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~----~~~ 526 (604)
..+..|.+..+... .-. -...+.......|.++...+.+.+|+..+..|.++.-.+..-....+ ...
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88889998888776 211 11112223344566666666677899999999998887644221111 011
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-------EEEEe-cCCCcEEEEEEecCCCCEEEEEeCCC
Q 007431 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-------FRTLK-CHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~-------~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
+.-......+..+....+...|+..+.+|.+.-++...-.. +..+. .....|.++...+.+...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 11100012333344444455677777788877776543211 11111 12346777777664445566666655
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.07 E-value=43 Score=34.01 Aligned_cols=173 Identities=8% Similarity=0.098 Sum_probs=94.0
Q ss_pred CcEEEEECCCC--cEEEEeeCCCc-------ceEEEEc-cC----CCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc--
Q 007431 379 KNIKYWDTETG--QVIRTFSTGKI-------PYVVKLN-PD----DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-- 442 (604)
Q Consensus 379 g~I~vWD~~t~--~~i~~~~~~~~-------~~~~~~~-~~----~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-- 442 (604)
-.|.+||+.++ +.++++..... ...+.+. .. ..+....++-...+.|.++|+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36888999999 99988865422 1233333 11 112233444445789999999998766655210
Q ss_pred ----------------CCceeEEEEeCC----CCEEEEEeCCCcEEEEECC-----CC---eEEEEeecCC-CCcccEEE
Q 007431 443 ----------------LGAVNTITFVDS----NRRFVTSSDDKSLRVWEFG-----IP---VVIKYISEPH-MHSMPSIS 493 (604)
Q Consensus 443 ----------------~~~V~~i~~sp~----~~~l~sgs~Dg~I~iwdl~-----~~---~~~~~~~~~~-~~~v~~l~ 493 (604)
...|..|+++|+ ++.|.-....+ -++|.+. .. ..++.+.... ...-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 135777888887 66666655443 2333331 11 1222222111 12233456
Q ss_pred Ec-CCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007431 494 LH-PNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 494 ~s-p~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
+. .+|.++++--..+.|..|+... .........+.....-.+...+.+..+|.+.+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 65 5677777777788999999875 32111111111111224556677766665544443
No 354
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=82.28 E-value=40 Score=33.06 Aligned_cols=236 Identities=7% Similarity=-0.018 Sum_probs=120.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeE---------EecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC---CC-----
Q 007431 326 GHLILSAGMDTKVKIWDVVNSGKCMR---------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---ET----- 388 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~---------~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~---~t----- 388 (604)
..++++.+.+|.|+--.+. ..+..+ .+. -...+..+........|+..+..|.+.-... ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~-~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLS-EYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEEEeCCCEEEEeeHH-HhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 5678888999999876652 111110 111 2233444444455566777777787655543 22
Q ss_pred -CcEEE---EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-------CceEEEEcCcCCceeEEEEeCCCCE
Q 007431 389 -GQVIR---TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 389 -~~~i~---~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-------~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
|..+. .+..+..+..+.....-.....++..+..|.++...+.. +.....+..+ +.+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22211 122222222222211112335788899999999987642 1111223333 55666666556667
Q ss_pred EEEEeCCCcEEEEECCCC-------eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc----ccc
Q 007431 458 FVTSSDDKSLRVWEFGIP-------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 526 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~-------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~----~~~ 526 (604)
++..+.+|.+..+....- .-..-+.......|.++....++..|++.+..|.++..++..-....+ ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 888888898888876321 111222223344566666555566788889999988877643211101 000
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+.-....+.+..+....+..-|+..+.+|.+.-+....
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11001113333333333345566666777766666543
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.14 E-value=41 Score=32.43 Aligned_cols=238 Identities=13% Similarity=0.062 Sum_probs=115.3
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
.|..|+.-.. +.++. . ||.|..|-....+++-.. ......|..|+...... ++. . ||.|..|-....-.+..
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC
Confidence 4667766533 44444 4 899999976433332111 11223566776654332 223 4 89999997653211110
Q ss_pred -eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007431 395 -FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 395 -~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~ 473 (604)
..... .+..+.... ...++-. +|.|+.|-....-.+.........|..|+..... .+.-. ||.|..|-..
T Consensus 97 P~~~~~--~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 97 PAEARS--GVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CGGGSS--SEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECC
T ss_pred CcccCC--CeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCC
Confidence 00111 222222211 2334444 9999999765421111111123456666654332 22233 6889988765
Q ss_pred CCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007431 474 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 474 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
....+. +.......|..++.-. .+.++- .+|.|+.|-.....++..... ....+..++......++++
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~h~~al~--- 235 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTE-----ALSGVSAIASGEWYSLALK--- 235 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGG-----GGSSCCEEEECSSCEEEEE---
T ss_pred CCCCCC-CceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcc-----cCCCceEEEcCCCEEEEEE---
Confidence 321111 1111123455555433 333333 599999997654332211110 1123555665544333333
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007431 554 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 554 dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+|.|+.|-.....++.. ...|.+++-..
T Consensus 236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 89999997655332211 23466666654
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.27 E-value=11 Score=39.74 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC---eEEEEeec--------CCCCcccEEEEcCC----CCEEEEEEc
Q 007431 443 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP---VVIKYISE--------PHMHSMPSISLHPN----TNWLAAQSL 506 (604)
Q Consensus 443 ~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~---~~~~~~~~--------~~~~~v~~l~~sp~----g~~l~s~s~ 506 (604)
......|+|.|++. +|+++...|.|++++.... ..+..+.. .....+..|+++|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567899999986 4556677899999975322 12222211 01346788999996 444443332
Q ss_pred C------------CeEEEEEcCCc--e--ee---cccccccCcccccceEEEEEcCCCCEEEEEcC
Q 007431 507 D------------NQILIYSTRER--F--QL---NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 507 D------------g~I~iwd~~~~--~--~~---~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
+ ..|.-|.+... . .. ..+..+...........|.|.|||.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 14555665421 0 00 01111110011233567999999987766554
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.66 E-value=68 Score=32.50 Aligned_cols=169 Identities=8% Similarity=-0.019 Sum_probs=96.8
Q ss_pred CeEEEEeCCCC--ceEEEEcCc------CCceeEEEEe---CC----CCEE-EEEeCCCcEEEEECCCCeEEEEeec---
Q 007431 423 KKIVQWDMNTK--EITQEYDQH------LGAVNTITFV---DS----NRRF-VTSSDDKSLRVWEFGIPVVIKYISE--- 483 (604)
Q Consensus 423 g~I~iwD~~s~--~~~~~~~~h------~~~V~~i~~s---p~----~~~l-~sgs~Dg~I~iwdl~~~~~~~~~~~--- 483 (604)
-+|.+||+.++ ++++.+.-. ...++.+.+. +. +.+. ++=+....|.|+|+.+++..+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 47888999998 888877532 3457888887 22 2333 3334567899999998877665520
Q ss_pred CC--------------CCcccEEEEcCC----CCEEEEEEcCCeEEEEEcCC-----ceeecccccccCccc-ccceEEE
Q 007431 484 PH--------------MHSMPSISLHPN----TNWLAAQSLDNQILIYSTRE-----RFQLNKKKRFAGHIV-AGYACQV 539 (604)
Q Consensus 484 ~~--------------~~~v~~l~~sp~----g~~l~s~s~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~-~~~v~~l 539 (604)
+. ...+..|+++|+ ++.|..+...+. ++|.+.+ .......+. .+... ......+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEE-eeecCCCCCcceE
Confidence 11 235778889987 777777776652 3444332 111111111 11110 1223346
Q ss_pred EEc-CCCCEEEEEcCCCcEEEEeCCC-C---eeEEEEecCC--CcEEEEEEecCCCCEEEEE
Q 007431 540 NFS-PDGRFVMSGDGEGKCWFWDWKS-C---KVFRTLKCHE--GVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 540 ~~s-pdg~~L~sgs~dG~I~iwd~~t-~---~~~~~l~~h~--~~V~~v~~sp~~~~~l~tg 594 (604)
++. .+|.++++--....|..|+..+ . .....+.... .-+.++.+.+ ++.+.++.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEE
Confidence 675 6787777777888999999765 1 1223332111 2356677665 44444443
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.27 E-value=1.1e+02 Score=33.80 Aligned_cols=239 Identities=10% Similarity=0.084 Sum_probs=115.7
Q ss_pred eEEEE-EcCCCCCEEE-EEECC----CcEEEEecCCCCeeeE-EecCCC-C------ceeeEEEccCCCEEEEE------
Q 007431 316 VSAIR-FFPKYGHLIL-SAGMD----TKVKIWDVVNSGKCMR-TYMGHS-K------AVRDISFCNDGTKFLTA------ 375 (604)
Q Consensus 316 V~~l~-fsp~~g~~L~-sgs~D----g~I~IWd~~~~~~~~~-~~~~h~-~------~V~~l~fspdg~~L~s~------ 375 (604)
...+. ++|+ +++++ +-|.. ..|+++|+ .+++.+. .+..-. . ....++|..+...+++.
T Consensus 131 ~~g~~~~~~~-~~~~~~~ls~~G~d~~~~~~~d~-~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQN-PNRYLISMSFGGKDEMFFREWDL-EKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSS-TTEEEEEEEETTCSEEEEEEEET-TTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCC-CCEEEEEeCCCCCceeEEEEEEC-CcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 34444 7888 55544 44433 36999999 5665542 111000 0 11344887444444432
Q ss_pred ----ECCCcEEEEECCCCc--EEEEeeCCCcceEEEEccCCCCCc----EEEEEE---cCCeEEEEeCCC--CceEEEEc
Q 007431 376 ----SYDKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQN----ILLAGM---SDKKIVQWDMNT--KEITQEYD 440 (604)
Q Consensus 376 ----s~Dg~I~vWD~~t~~--~i~~~~~~~~~~~~~~~~~~~~~~----~lvsg~---~dg~I~iwD~~s--~~~~~~~~ 440 (604)
++...|+.|.+.+.. -...+........+......+... ++++.+ ....+++.|... ++. ..+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEee
Confidence 123568888887652 233343322222222222222222 344433 225567777653 332 2232
Q ss_pred CcCCceeEEEEeCCCCEEEEE----------eCCCcEEEEECCCCe-------EEEE-eecCCCCcccEEEEcCCCCEEE
Q 007431 441 QHLGAVNTITFVDSNRRFVTS----------SDDKSLRVWEFGIPV-------VIKY-ISEPHMHSMPSISLHPNTNWLA 502 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sg----------s~Dg~I~iwdl~~~~-------~~~~-~~~~~~~~v~~l~~sp~g~~l~ 502 (604)
.... ..+..+..+.+++.. ...+.|.+.++..+. .... +.......+..+.+..+ .+++
T Consensus 288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2222 122334455555532 246789999987631 1222 33334456778888865 5667
Q ss_pred EEEcCCe--EEEEEcCCce-eecccccccCcccccceEEEEEcCCCC-EEEEEc---CCCcEEEEeCC
Q 007431 503 AQSLDNQ--ILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD---GEGKCWFWDWK 563 (604)
Q Consensus 503 s~s~Dg~--I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs---~dG~I~iwd~~ 563 (604)
+...++. |.++++.++. .......+.. .+.+..+.+++++. ++++.+ .-+.++.+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 7777765 5566655442 1111011211 12344455666665 444433 24678888876
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.70 E-value=66 Score=30.90 Aligned_cols=198 Identities=7% Similarity=0.004 Sum_probs=107.6
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecC--CCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCc
Q 007431 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--NSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~--~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~ 390 (604)
+.+..+..... ...|+.-+..|.++--.++ ........+ .....|..+.... +...++.++.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34555554444 4556666677876653331 111110012 2345566664422 56789999999999999875432
Q ss_pred ----EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC---------CceEEEEcCcCCceeEEEEeCCCCE
Q 007431 391 ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 391 ----~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s---------~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
-+..+........+....... ...++..+..|.++.+.... |.....+. ....|..+...+++..
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 112222221122222222222 24688888899988886532 11111222 2355667666666778
Q ss_pred EEEEeCCCcEEEEECCC-------CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE--EEcCC
Q 007431 458 FVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTRE 517 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~-------~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~i--wd~~~ 517 (604)
++..+..|.++...+.. +.-+..+ .....+..+........++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 99999999999888632 1122222 12334444433334456777777888777 77643
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.58 E-value=1.2e+02 Score=33.91 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC-------CCceeeEEEccC-CCEEEEEECCCc----
Q 007431 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCND-GTKFLTASYDKN---- 380 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~fspd-g~~L~s~s~Dg~---- 380 (604)
.+.|.+|+++|.+...++.++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 457999999998677788888777665554 455544444332 246999999984 344555443211
Q ss_pred EEEE-ECCCCcEEEEeeCC----------CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC------cC
Q 007431 381 IKYW-DTETGQVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HL 443 (604)
Q Consensus 381 I~vW-D~~t~~~i~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~------h~ 443 (604)
-.|| ..+.|+.-..+... .....+.+.+... ..++++...+.|.. ....|+.-..+.. ..
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~--~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS--NEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE--EEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC--CEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 2333 33444433332211 0123456665432 45666664443322 2233333333321 12
Q ss_pred CceeEEEEeCC-CCEEEEEeCC
Q 007431 444 GAVNTITFVDS-NRRFVTSSDD 464 (604)
Q Consensus 444 ~~V~~i~~sp~-~~~l~sgs~D 464 (604)
..+..|.+.|. ...++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 45788888874 3455555544
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=70.87 E-value=92 Score=31.37 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=83.9
Q ss_pred ccCCCEEEEEECCCcEEEEECCC---------CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEe---CCC-
Q 007431 366 CNDGTKFLTASYDKNIKYWDTET---------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD---MNT- 432 (604)
Q Consensus 366 spdg~~L~s~s~Dg~I~vWD~~t---------~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD---~~s- 432 (604)
-++...+++.+.+|.|+--.+.. |..-..++.+.....+..... ...++..+..|.++-+. ++.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNT---HDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECT---TCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecC---CCEEEEEeCCCeEEEEEHHHCcCC
Confidence 46677899999999999765421 222233333333322222221 24567777788877664 322
Q ss_pred -----CceEE---EEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCCcccEEEEcC
Q 007431 433 -----KEITQ---EYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 433 -----~~~~~---~~~~h~~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~~v~~l~~sp 496 (604)
|..+. .+. ....|.++.... .+.+|+.++..|.++...+..- .-+..+.......+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 11111 111 234566655443 4568999999999999886321 111122222234455555555
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 007431 497 NTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
....|+..+..|.+..|....
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEEccc
Confidence 566788889999998888654
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.14 E-value=85 Score=30.69 Aligned_cols=190 Identities=10% Similarity=0.027 Sum_probs=109.2
Q ss_pred CCEEEEEECCCcEEEEecCCC------CeeeE--EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCC---C-----
Q 007431 326 GHLILSAGMDTKVKIWDVVNS------GKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---G----- 389 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~------~~~~~--~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t---~----- 389 (604)
..++++.+.+|.|+--.+..- +.-+. .+. -...+..+........++..+..|.++-..... .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 567888999999998766211 00111 112 223455555555566788888888877665531 1
Q ss_pred -cE---EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-------ceEEEEcCcCCceeEEEEeCCCCEE
Q 007431 390 -QV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 390 -~~---i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-------~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
.. ...+..+.....+...........++..+..|.++...+..- .....+.. .+.+..+.....+..+
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 10 001222222222222211112356888899999998877432 22222332 4566666666666788
Q ss_pred EEEeCCCcEEEEECCCC-------eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007431 459 VTSSDDKSLRVWEFGIP-------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~-------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+..+.+|.+..+....- .-...+.......+.++....++..|++.+..|....+.+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 88899999988887431 112222222344566665555667788889999999888754
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.95 E-value=86 Score=30.66 Aligned_cols=193 Identities=9% Similarity=0.038 Sum_probs=105.2
Q ss_pred cCCCEEEEEECCCcEEEEECCCCc-------EEEEe--eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC---CCc
Q 007431 367 NDGTKFLTASYDKNIKYWDTETGQ-------VIRTF--STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKE 434 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~-------~i~~~--~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---s~~ 434 (604)
++...+++.+.+|.|+--.+..-+ -+..+ ..+.....+..... ...++..+..|.++-+... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~---~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT---HDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC---CCEEEEEECCCeEEEEEHHHCCCCC
Confidence 456678889999999988664322 12222 22222222222221 2457777888887776543 211
Q ss_pred eE---------EEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCCcccEEEEcCC
Q 007431 435 IT---------QEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 435 ~~---------~~~~~h~~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~~v~~l~~sp~ 497 (604)
.. ..+. ....|.++...+ +..+|+..+..|.++...+..- .-...+.......+..+.....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 00 0111 223455554443 4667888899999998887322 1111222223445656555555
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecc-cccccCc--ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007431 498 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 498 g~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
...++..+.+|.+..+....-....+ ......- .....+..+..-.++..|++.+..|.++...+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 67788999999999998754211111 0000000 012344555555566778888999999988874
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=68.55 E-value=85 Score=30.09 Aligned_cols=150 Identities=10% Similarity=0.023 Sum_probs=84.6
Q ss_pred CcEEEEEEcCCeEEEEeCCCCc------eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-------eEEE
Q 007431 413 QNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-------VVIK 479 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~------~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-------~~~~ 479 (604)
...++..+.+|.|+...+..-. ....+. ....+..+........++..+..|.+..+....- .-..
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 3689999999999998764421 111222 2345555555556668888888999888875321 1111
Q ss_pred EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007431 480 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 480 ~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
.+.......|..+...+++..++..+..|.++...+..-....+- +..........+..+....+...|+..+.+|.+.
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 222223455666665566778899999999998887542211110 0000001122333333333344566667777777
Q ss_pred E--EeCC
Q 007431 559 F--WDWK 563 (604)
Q Consensus 559 i--wd~~ 563 (604)
. ++..
T Consensus 239 r~~~~~~ 245 (276)
T 3no0_A 239 YDKINQK 245 (276)
T ss_dssp EEEEEGG
T ss_pred EeeeCHH
Confidence 7 7654
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.21 E-value=1.9e+02 Score=33.18 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=29.9
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007431 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 523 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~ 523 (604)
.+.+++..++..++++-+.|+++++|++.++..+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 456677778888999999999999999998876543
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.58 E-value=2.2e+02 Score=32.65 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667788889999999999999999999999988764
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=61.23 E-value=1.3e+02 Score=29.58 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=122.2
Q ss_pred CCEEEEEECCCcEEEEecC---CCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC---------CCcEEE
Q 007431 326 GHLILSAGMDTKVKIWDVV---NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQVIR 393 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~---~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~---------t~~~i~ 393 (604)
..++++.+.+|.|+--.+. ..+.....+.. ...+..+........|+..+..|.+.-.... .|..+.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 5678888999999877552 01111111222 2344455555556677777778876655442 122111
Q ss_pred E---eeCCCcce-EEEEccCCCCCcEEEEEEcCCeEEEEeCCC--------CceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007431 394 T---FSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNT--------KEITQEYDQHLGAVNTITFVDSNRRFVTS 461 (604)
Q Consensus 394 ~---~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s--------~~~~~~~~~h~~~V~~i~~sp~~~~l~sg 461 (604)
. +..+..+. ++.+... .....++..+.+|.++...+.. +.....+.. .+.+..+........++..
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~-~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDF-ELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCT-TSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEE
T ss_pred hccCCCCCCEEEEEEEeccc-CCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEE
Confidence 1 12222222 2222211 1235688889999999987631 211112222 2556666666566678888
Q ss_pred eCCCcEEEEECCC-------CeEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeec-------cccc
Q 007431 462 SDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLN-------KKKR 526 (604)
Q Consensus 462 s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~-------~~~~ 526 (604)
+.+|.+..+.... ..-++-+.......|.++...+.+. .|++.+..|..+..++..-.... ..+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~ 241 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeee
Confidence 8899988888632 1112222223344566665544455 78888889988887765421111 0111
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+.. ....+..+....++..|+..+..|.+.-..+..
T Consensus 242 ~~~--~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 242 LKA--NPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CSS--SCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred cCC--CCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 111 111233222223344566666777776666543
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=59.25 E-value=1.5e+02 Score=29.69 Aligned_cols=238 Identities=10% Similarity=0.132 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe----------eeEEecC-CCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007431 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----------CMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~----------~~~~~~~-h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
|..|+.. ....+.-..||.|..|-....++ ....+.. ....+..++.+....+.+.-..||.|..|
T Consensus 55 i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4444432 44555567788898885421111 1111111 22335556676666777777889999999
Q ss_pred ECCCC---------c--EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-c---------eE-EEEcC-
Q 007431 385 DTETG---------Q--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------IT-QEYDQ- 441 (604)
Q Consensus 385 D~~t~---------~--~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~---------~~-~~~~~- 441 (604)
-.... . ....+..-....+..+.... ...++-..+|.|+.|-.... + .. ..+..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 65321 0 11111111111233333322 34666678999999975421 1 11 11111
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007431 442 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-----------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
....|..++........+....+|.|+.|-.... .....+.......|..++. ...+.++-..+|.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeE
Confidence 1234556665433356666778899999965321 1111221112223444444 34455566789999
Q ss_pred EEEEcCCceee--------cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007431 511 LIYSTRERFQL--------NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 511 ~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+.|-.....++ ........ .....|..++. .....++-..+|.|+.|-...
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EEEeCCCCCCCCCCCCccccCCeEecc-CCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 99975432111 00000100 01123444444 334555567899999997653
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.60 E-value=2.5e+02 Score=32.84 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007431 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3345667788999999999999999999999988765
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.41 E-value=1.6e+02 Score=29.52 Aligned_cols=193 Identities=9% Similarity=0.102 Sum_probs=107.0
Q ss_pred cCCCCCEEEEEECCCcEEEEecC-----C-C--CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC---C---
Q 007431 322 FPKYGHLILSAGMDTKVKIWDVV-----N-S--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---E--- 387 (604)
Q Consensus 322 sp~~g~~L~sgs~Dg~I~IWd~~-----~-~--~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~---~--- 387 (604)
-|+ ..++++.+.+|.|+--.+. . . +.....+. ....+..+........|+..+..|.+.-+.. .
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 355 6789999999999876541 1 1 11222232 3455666666666667777777787665543 2
Q ss_pred ---CCcEEEE---eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-------CceEEEEcCcCCceeEEEEeCC
Q 007431 388 ---TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 388 ---t~~~i~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-------~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
.|..+.. +..+..+..+...........++.++..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1222111 22222222222222112336899999999999887532 211122322 345555555556
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------eEEEEeecCCCCcccEEEEcC-------------------------------
Q 007431 455 NRRFVTSSDDKSLRVWEFGIP-------VVIKYISEPHMHSMPSISLHP------------------------------- 496 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~-------~~~~~~~~~~~~~v~~l~~sp------------------------------- 496 (604)
...++..+..|.+..+....- .-++-+.......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 667888888898888875321 112222222334455544443
Q ss_pred ----CCCEEEEEEcCCeEEEEEcCC
Q 007431 497 ----NTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 497 ----~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.+..|++.+..|..+...+..
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHH
Confidence 346788889999988887654
No 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.66 E-value=1.9e+02 Score=29.90 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCC-EEEEEECCCcEEEEecCCC--CeeeEEec---------CCCCceeeEEEccC
Q 007431 314 KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNS--GKCMRTYM---------GHSKAVRDISFCND 368 (604)
Q Consensus 314 ~~V~~l~fsp~~g~-~L~sgs~Dg~I~IWd~~~~--~~~~~~~~---------~h~~~V~~l~fspd 368 (604)
..-..|+|.|+ +. .|+++...|.|++++.... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 44678999999 64 5566678899999975211 11222221 11356788999995
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.82 E-value=1.7e+02 Score=28.38 Aligned_cols=228 Identities=7% Similarity=0.024 Sum_probs=116.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEE-------E--eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC---CC---
Q 007431 368 DGTKFLTASYDKNIKYWDTETGQVIR-------T--FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT--- 432 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~-------~--~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~---~s--- 432 (604)
+...+++.+.+|.|+--.+..-+... . +..+.....+..... ...++..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~---~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT---HDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 45578888999999877765432211 1 112222222222221 245777777888766643 22
Q ss_pred ---CceEE---EEcCcCCceeEEEEe---CCCCEEEEEeCCCcEEEEECCC---C--eEEEEeecCCCCcccEEEEcCCC
Q 007431 433 ---KEITQ---EYDQHLGAVNTITFV---DSNRRFVTSSDDKSLRVWEFGI---P--VVIKYISEPHMHSMPSISLHPNT 498 (604)
Q Consensus 433 ---~~~~~---~~~~h~~~V~~i~~s---p~~~~l~sgs~Dg~I~iwdl~~---~--~~~~~~~~~~~~~v~~l~~sp~g 498 (604)
|..+. .+. ....|.++... .++.+++..+..|.++-..+.. . .-+..+.......+..+......
T Consensus 79 ~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 11111 121 23456555443 3456788999999999987631 1 11111211223455555555556
Q ss_pred CEEEEEEcCCeEEEEEcCCceeeccc-ccccC--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---------e
Q 007431 499 NWLAAQSLDNQILIYSTRERFQLNKK-KRFAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---------K 566 (604)
Q Consensus 499 ~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~--~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~---------~ 566 (604)
..|+..+.+|.+..+....-....+. ....+ -.....+..+....++..|++.+..|.++-.++... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 67888899999988887542111110 00000 001234555554455667888899999888876321 1
Q ss_pred eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007431 567 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 567 ~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
....+..-.+.+..+.... +..-|+..+.+|.+
T Consensus 238 ~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTL 270 (307)
T ss_dssp ESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCE
T ss_pred EeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcE
Confidence 1222222335565555544 23445555566654
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=50.56 E-value=1.9e+02 Score=28.35 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=102.8
Q ss_pred CCEEEEEECCCcEEEEecC---C-----CCeeeEEec--CCCCceeeEEEcc---CCCEEEEEECCCcEEEEECCCCc--
Q 007431 326 GHLILSAGMDTKVKIWDVV---N-----SGKCMRTYM--GHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQ-- 390 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~---~-----~~~~~~~~~--~h~~~V~~l~fsp---dg~~L~s~s~Dg~I~vWD~~t~~-- 390 (604)
...|+.-+..|.++-..++ . .+.++..+. .....|..+...+ +...++.++.+|.|+.-.+..-.
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 4555556666766555432 1 122221111 1234455544333 47799999999999998865422
Q ss_pred ---EEE--EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC--CCce-------E--EEEcCcCCceeEEEEeCC
Q 007431 391 ---VIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN--TKEI-------T--QEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 391 ---~i~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~--s~~~-------~--~~~~~h~~~V~~i~~sp~ 454 (604)
-+. .+..+.....+.... . ...++..+..|.+..+... .-.. + ..+. ....|.++...+.
T Consensus 133 ~r~G~~~i~lke~D~lv~~~~~~-~--~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~ 208 (327)
T 3uc1_A 133 RSGGIVAVNLRDNDELVGAVLCS-A--GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVRE 208 (327)
T ss_dssp CSSCEESCBCCTTCCEEEEEEEC-T--TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCT
T ss_pred ccCceEEEEECCCCEEEEEEEec-C--CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECC
Confidence 122 222222222222222 1 2457888889998888766 2110 1 1121 2345777776666
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------eEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007431 455 NRRFVTSSDDKSLRVWEFGIP-------VVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~-------~~~~~~~~~~-~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+..++..+..|.++.-.+..- .-+..+.... ...+..+........++..+.+|.+..+....
T Consensus 209 ~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 209 GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 778999999999988876321 1122221111 23344444444456777778888888887654
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.43 E-value=59 Score=38.24 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.3
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC
Q 007431 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 397 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~ 397 (604)
.+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667777888999999999999999999999988653
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=42.97 E-value=3.7e+02 Score=29.49 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=38.7
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC-------CCceeeEEEcc-CCCEEEEEE
Q 007431 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCN-DGTKFLTAS 376 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-------~~~V~~l~fsp-dg~~L~s~s 376 (604)
.|..|+++|.+...|+.+...+.|..++ ..++.-..+..+ ...|.+|+++| +.+.++.+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 7999999998667777777666655544 455544444332 24589999998 434444443
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.68 E-value=59 Score=35.15 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCEEEEEeCC------------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007431 446 VNTITFVDSNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~D------------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
.-.|+|++.|+++++...+ ..+.+.+..+++....+..+....++.++|+|+++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4568999999877765432 23555666667777666667778899999999998877653
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.57 E-value=74 Score=34.33 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=41.0
Q ss_pred EEEEEcCCCCEEEEEcCC------------CcEEEEeCCCCeeEEEEecCC-CcEEEEEEecCCCCEEEE
Q 007431 537 CQVNFSPDGRFVMSGDGE------------GKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 537 ~~l~~spdg~~L~sgs~d------------G~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~t 593 (604)
-.|+|+|.|+++++-+.+ ..+.+.+..++++.+.+.++. ..++.++|+|+ ++.|+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD-g~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC-CCEEEE
Confidence 459999999987776543 346667777888887777664 47999999995 444443
No 378
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.97 E-value=4e+02 Score=29.57 Aligned_cols=146 Identities=8% Similarity=0.037 Sum_probs=71.9
Q ss_pred CCceeeEEEccC-CCEEEEEECCCcEEEEECCCCcEEEEeeCC--------CcceEEEEccCCCCCcEEEEEEcC-----
Q 007431 357 SKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMSD----- 422 (604)
Q Consensus 357 ~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~~d----- 422 (604)
...|.+|+++|. ...++.++..+.|...+ +.|+.-..+... .....+.+.+... ..++++...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~--~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP--DRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE--EEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCC--CEEEEEeCccCCCc
Confidence 468999999984 45667777667665544 334433333221 1244555555322 345555432
Q ss_pred -CeEEEEeCCCCceEEEEcCc-------C--CceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCeEEEEeec-----CCC
Q 007431 423 -KKIVQWDMNTKEITQEYDQH-------L--GAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-----PHM 486 (604)
Q Consensus 423 -g~I~iwD~~s~~~~~~~~~h-------~--~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~ 486 (604)
+.| +.....|+.-..+... . ..+..+++.|.. ..++.+...+.|. .....++.-..+.. ...
T Consensus 91 ~~~v-~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAF-YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEE-EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTT
T ss_pred ccEE-EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCC
Confidence 222 2333444433333211 1 135678888753 4555555344332 12222222222221 012
Q ss_pred CcccEEEEcCC-CCEEEEEEcC
Q 007431 487 HSMPSISLHPN-TNWLAAQSLD 507 (604)
Q Consensus 487 ~~v~~l~~sp~-g~~l~s~s~D 507 (604)
..+..+.++|. +..++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 45778888885 4566666655
No 379
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.60 E-value=4.5e+02 Score=28.86 Aligned_cols=229 Identities=10% Similarity=0.107 Sum_probs=114.8
Q ss_pred eeEE-EccCCCEEEEE-ECC----CcEEEEECCCCcEEE-Eee-CCCc-------ceEEEEccCCCCCcEEEEE------
Q 007431 361 RDIS-FCNDGTKFLTA-SYD----KNIKYWDTETGQVIR-TFS-TGKI-------PYVVKLNPDDDKQNILLAG------ 419 (604)
Q Consensus 361 ~~l~-fspdg~~L~s~-s~D----g~I~vWD~~t~~~i~-~~~-~~~~-------~~~~~~~~~~~~~~~lvsg------ 419 (604)
..+. ++|++++++.+ |.. ..|+++|+.+++.+. .|. ..+. ...+.|... ..++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~---~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK---DTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET---TEEEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC---CEEEEEeCCCCCC
Confidence 3344 78888877654 332 469999999998763 122 1100 023355421 1233321
Q ss_pred ----EcCCeEEEEeCCCC--ceEEEEcCcCCce-eEEEEeCCCC-----EEEEEeCC---CcEEEEECCCC-eEEEEeec
Q 007431 420 ----MSDKKIVQWDMNTK--EITQEYDQHLGAV-NTITFVDSNR-----RFVTSSDD---KSLRVWEFGIP-VVIKYISE 483 (604)
Q Consensus 420 ----~~dg~I~iwD~~s~--~~~~~~~~h~~~V-~~i~~sp~~~-----~l~sgs~D---g~I~iwdl~~~-~~~~~~~~ 483 (604)
+.-..|+.|.+-+. +-...+.+....+ .+...+++++ .+++.+.+ ..+.+.+...+ .....+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 12357888887664 2333444333332 2344455555 34444422 34566665532 22333433
Q ss_pred CCCCcccEEEEcCCCCEEEEE----------EcCCeEEEEEcCCcee----ecccccccCcccccceEEEEEcCCCCEEE
Q 007431 484 PHMHSMPSISLHPNTNWLAAQ----------SLDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVM 549 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l~s~----------s~Dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~v~~l~~spdg~~L~ 549 (604)
+... .+..+..+.+++.. ...+.|.+.++.+... ......+-.+.....+..+.+..+ .+++
T Consensus 289 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 3322 22334455554432 2457788888865321 011111112222345667888876 5677
Q ss_pred EEcCCC--cEEEEeCCCCe-eEEE-EecC-CCcEEEEEEecCCCCEEEEEeC
Q 007431 550 SGDGEG--KCWFWDWKSCK-VFRT-LKCH-EGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 550 sgs~dG--~I~iwd~~t~~-~~~~-l~~h-~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
+...+| .|.++++.+++ .... +... .+.+..+...+++..++++.+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 776666 46777876665 2333 3322 2456666666655556666554
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.39 E-value=1.1e+02 Score=32.95 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=43.9
Q ss_pred CceeEEEEeCCCCEEEEEeC------------CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007431 444 GAVNTITFVDSNRRFVTSSD------------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~------------Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
.....|.|.++|.+.++... ...|..++..++.....+..+....++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 44678999999987774432 124666666666665555445566789999999999888765
No 381
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=36.87 E-value=3.3e+02 Score=27.07 Aligned_cols=261 Identities=12% Similarity=0.104 Sum_probs=122.4
Q ss_pred CEEEEEECCCcEEEEecCCCCee-------eEE---ecC-CCCceeeEEEccCCCEEEEEECCCcEEEEECCCC------
Q 007431 327 HLILSAGMDTKVKIWDVVNSGKC-------MRT---YMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------ 389 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~-------~~~---~~~-h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~------ 389 (604)
..++.-..||+|..|=....+++ ... +.. ....|..|+. .....+.-..||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45555566788888855322221 110 000 0112334433 3445666677899999864321
Q ss_pred --c---EEEEeeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-c----------eEEEEcCc-CCceeEEE
Q 007431 390 --Q---VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E----------ITQEYDQH-LGAVNTIT 450 (604)
Q Consensus 390 --~---~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~----------~~~~~~~h-~~~V~~i~ 450 (604)
. ....+.. ......+.+..- ....++-..+|.|+.|-.... + ....+... ...|..|+
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G---~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSG---GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTT---CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CcCCccCCEEcccccCCceeEEEECcC---CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 1 1111111 111223344332 245666678999999965421 0 11111111 12455555
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC----------e-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007431 451 FVDSNRRFVTSSDDKSLRVWEFGIP----------V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~----------~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
. .....+....+|.|+.|-.... . ....+.......|..++......+.++...+|.|+.|-.....
T Consensus 166 ~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 166 A--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp E--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred e--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 4 3455666677899999975321 1 1122222223345556554434567777889999999754321
Q ss_pred ee-----------cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--------e---eEEEEec-CCC
Q 007431 520 QL-----------NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--------K---VFRTLKC-HEG 576 (604)
Q Consensus 520 ~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~--------~---~~~~l~~-h~~ 576 (604)
++ ..+..+. ...+..++.. ..+.++-..+|.|+.|-.... . ....+.. ...
T Consensus 244 qLG~g~~~~~~~p~~v~~~~----~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLT----GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGT----TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred CCCCCCCCCccccEEecccC----CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 11 0111111 1224444443 334455567889999965321 0 1111111 123
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007431 577 VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 577 ~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.|..++.. ....+....||.|..|
T Consensus 318 ~v~~ia~G---~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 318 KVIAIATG---SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp CEEEEEEC---SSEEEEEETTCCEEEE
T ss_pred CEEEEEec---cCeEEEECCCCCEEEe
Confidence 56666653 3455556788888888
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.80 E-value=54 Score=36.22 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.8
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC
Q 007431 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 397 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~ 397 (604)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 477999999999999999999999888765
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.92 E-value=1.4e+02 Score=33.00 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007431 543 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
.+..+|++-+.|.++++|++.+++++.+...
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999999888764
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.40 E-value=1.7e+02 Score=31.46 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCEEEEEcC------------CCcEEEEeCCCCeeEEEEecC-CCcEEEEEEecCCCCEEEEE
Q 007431 536 ACQVNFSPDGRFVMSGDG------------EGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~------------dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tg 594 (604)
...|.|+++|.+.++-+. ...|+.++..++++...+.+. ...++.++|+|++..++++.
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 457999999988875432 226777787788877777654 34689999999544444443
No 385
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.86 E-value=5.8e+02 Score=27.87 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=18.9
Q ss_pred ceeeEEEccC-CCEEEEEECCCcEEEEE
Q 007431 359 AVRDISFCND-GTKFLTASYDKNIKYWD 385 (604)
Q Consensus 359 ~V~~l~fspd-g~~L~s~s~Dg~I~vWD 385 (604)
.|..|+++|. ...++.+...+.|..++
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~ 51 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD 51 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC
Confidence 7999999995 35566666566655554
No 386
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=23.04 E-value=2.9e+02 Score=21.97 Aligned_cols=13 Identities=0% Similarity=0.133 Sum_probs=6.8
Q ss_pred eEEEEeCCCCEEE
Q 007431 447 NTITFVDSNRRFV 459 (604)
Q Consensus 447 ~~i~~sp~~~~l~ 459 (604)
..+.+.++|++++
T Consensus 85 ~~l~l~~dGnlvl 97 (110)
T 3a0c_A 85 YVLVLQQDRNVVI 97 (110)
T ss_dssp CEEEECTTSCEEE
T ss_pred EEEEEeCCccEEE
Confidence 3455556665443
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.38 E-value=5.3e+02 Score=24.04 Aligned_cols=152 Identities=6% Similarity=-0.057 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC-------CCCeEE-EEeec
Q 007431 412 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF-------GIPVVI-KYISE 483 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl-------~~~~~~-~~~~~ 483 (604)
....+++.+.+|.|+--..........-..-...+..+........|+..+..|.++-+.. ..+..+ ..+..
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccceEEEEEc-CCCCEEEEEcCCCcEEEEe
Q 007431 484 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~L~sgs~dG~I~iwd 561 (604)
.....|.++....++.+|+..+..|.++...+.. ......-.....-.....+..+... .++..|+..+.+|.+..+.
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Q ss_pred CC
Q 007431 562 WK 563 (604)
Q Consensus 562 ~~ 563 (604)
..
T Consensus 161 ~~ 162 (256)
T 1zvt_A 161 VS 162 (256)
T ss_dssp GG
T ss_pred HH
Done!