BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007432
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 166 bits (421), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 103/153 (67%), Gaps = 2/153 (1%)
Query: 8 SLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREW 67
SLP GFRF PTDEEL+ YL K G++ + +I+EID+ K +PW LP+ ++ K EW
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK--EW 73
Query: 68 FFFCPQDRKYPNGHRLNRATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRT 127
+FF P+DRKYPNG R NR +GYWKATG D+ I + +G+KK LVF++G+APKG +T
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 128 NWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQ 160
NW+MHEYR +VLCR++KKQ
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 166 bits (421), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 103/153 (67%), Gaps = 2/153 (1%)
Query: 8 SLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREW 67
SLP GFRF PTDEEL+ YL K G++ + +I+EID+ K +PW LP+ ++ K EW
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK--EW 76
Query: 68 FFFCPQDRKYPNGHRLNRATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRT 127
+FF P+DRKYPNG R NR +GYWKATG D+ I + +G+KK LVF++G+APKG +T
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 128 NWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQ 160
NW+MHEYR +VLCR++KKQ
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 160 bits (404), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 7/159 (4%)
Query: 8 SLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREW 67
+LP GFRF PTD+ELV+ YL K G V +I+E+D+ K +PWDLP+ ++ REW
Sbjct: 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA--REW 71
Query: 68 FFFCPQDRKYPNGHRLNRATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRT 127
+FF P+DRKYPNG R NRA GYWKATG D+ + +G+KK LVF+ G+AP+G +T
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKT 131
Query: 128 NWVMHEYRATTDDLDGTKPGQSA-----FVLCRLFKKQD 161
+W+MHEYR + + +VLCRL+ K++
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|3LD1|A Chain A, Crystal Structure Of Ibv Nsp2a
Length = 359
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 259 KGSSSTSHSVRNDLTTIDEKGQLPSESDAY 288
KG+ +RNDLT +D+K ++P ES+ +
Sbjct: 289 KGTQVVVRGMRNDLTLLDQKAEIPVESEGW 318
>pdb|1HJL|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|1HJJ|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|1H4C|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|1H4D|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|1FR9|A Chain A, Structure Of E. Coli Moba
pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gtp And Manganese
Length = 194
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 LSVIKTKDREWFFFCPQDRKY--PN-GHRLN--RATAAGYWKATGK 97
LSV++ + EWF FCP D Y P+ RLN R A W G+
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGE 129
>pdb|2Q03|A Chain A, Crystal Structure Of Uncharacterized Protein (yp_563039.1)
From Shewanella Denitrificans Os217 At 1.80 A Resolution
pdb|2Q03|B Chain B, Crystal Structure Of Uncharacterized Protein (yp_563039.1)
From Shewanella Denitrificans Os217 At 1.80 A Resolution
Length = 138
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 498 ESKPIVAEGVADAEKELPVNAATGAMYELKGDSQLASNENSNISEEQT 545
+ K + A GVA +E EL +ATG L G S EN + + T
Sbjct: 87 QHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQIT 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,564,312
Number of Sequences: 62578
Number of extensions: 664385
Number of successful extensions: 1242
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 12
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)