Query 007432
Match_columns 604
No_of_seqs 198 out of 976
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 01:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.8E-53 9.7E-58 406.6 15.4 155 5-161 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.7E-53 1.3E-57 404.7 13.4 157 4-162 12-168 (171)
3 2l6w_A Beta-type platelet-deri 20.6 32 0.0011 25.6 0.0 24 576-599 11-34 (39)
4 2oh5_A Polyhedrin, C-polyhedri 11.1 1.4E+02 0.0048 28.6 2.9 27 90-116 141-168 (248)
5 1ldd_A APC2WHB, anaphase promo 9.5 1.4E+02 0.0046 24.8 1.9 26 10-36 37-63 (74)
6 4dox_A Coat protein; all helix 8.4 1.4E+02 0.0049 29.6 1.9 21 11-31 157-177 (226)
7 2wwb_C SEC61BETA, protein tran 7.8 1.5E+02 0.0052 25.9 1.6 25 577-601 70-94 (96)
8 2bbx_A Trap, thrombospondin-re 7.3 1.4E+02 0.005 22.0 1.1 15 443-457 17-31 (49)
9 3vdj_A Circumsporozoite (CS) p 7.1 1.5E+02 0.0053 24.9 1.3 22 443-464 32-53 (77)
10 3cpr_A Dihydrodipicolinate syn 6.5 1.7E+02 0.0059 29.4 1.6 18 9-27 118-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.8e-53 Score=406.56 Aligned_cols=155 Identities=48% Similarity=0.948 Sum_probs=134.6
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCcccccccCCceEEEeeccCCCCCCCCCcc
Q 007432 5 SLNSLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREWFFFCPQDRKYPNGHRLN 84 (604)
Q Consensus 5 sm~~LPpGFRF~PTDEELI~~YLr~KI~G~plp~~~I~evDVY~~ePWdLP~~s~~~~~d~eWYFFspr~rKypnGsR~n 84 (604)
....|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+. .++.+|||||++++||++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCce
Confidence 3468999999999999999999999999999999999999999999999999763 45689999999999999999999
Q ss_pred cccccceeeeeCCceeeecCceeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC--C---CCCCCceEEEEEEee
Q 007432 85 RATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDG--T---KPGQSAFVLCRLFKK 159 (604)
Q Consensus 85 Ratg~GyWKatGk~k~I~sgg~vVG~KKtLvFy~Grapkg~KT~WvMhEYrL~~~~l~~--~---~~~~~d~VLCRIfkK 159 (604)
|+|++||||+||++++|..++.+||+||+|+||.|++|++.||+|+||||+|....... . ....++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 99999999999999999988899999999999999999999999999999998764321 1 123579999999998
Q ss_pred CC
Q 007432 160 QD 161 (604)
Q Consensus 160 ~~ 161 (604)
++
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.7e-53 Score=404.72 Aligned_cols=157 Identities=49% Similarity=0.914 Sum_probs=131.8
Q ss_pred cCCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCcccccccCCceEEEeeccCCCCCCCCCc
Q 007432 4 LSLNSLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREWFFFCPQDRKYPNGHRL 83 (604)
Q Consensus 4 lsm~~LPpGFRF~PTDEELI~~YLr~KI~G~plp~~~I~evDVY~~ePWdLP~~s~~~~~d~eWYFFspr~rKypnGsR~ 83 (604)
.....|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+ ..++.+|||||++++||++|.|+
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------C
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCcc
Confidence 3457899999999999999999999999999999999999999999999999975 34678999999999999999999
Q ss_pred ccccccceeeeeCCceeeecCceeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCceEEEEEEeeCCC
Q 007432 84 NRATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQDE 162 (604)
Q Consensus 84 nRatg~GyWKatGk~k~I~sgg~vVG~KKtLvFy~Grapkg~KT~WvMhEYrL~~~~l~~~~~~~~d~VLCRIfkK~~~ 162 (604)
+|+|++||||+||++++|..++.+||+||+|+||+|++|++.||+|+||||+|............++|||||||+|+..
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999999888999999999999999999999999999999987542111234679999999998763
No 3
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=20.61 E-value=32 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 007432 576 SFAVLFRAAAVVVMFAILVSTWRC 599 (604)
Q Consensus 576 ~s~~~~~~a~vlv~~~~l~~~w~~ 599 (604)
.+++++.++++++++++|+-+|+.
T Consensus 11 l~avlal~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 11 ISAILALVVLTIISLIILIMLWQK 34 (39)
Confidence 446677777788888999999964
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=11.13 E-value=1.4e+02 Score=28.62 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=22.1
Q ss_pred ceeeeeC-CceeeecCceeeeeEEEEEE
Q 007432 90 GYWKATG-KDRKIKSGNHLIGMKKTLVF 116 (604)
Q Consensus 90 GyWKatG-k~k~I~sgg~vVG~KKtLvF 116 (604)
--|.+|| +-++|+.+|++||+...|..
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 4599999 45789999999999887753
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=9.54 E-value=1.4e+02 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCCceeCC-ChHHHHHHHHHHHHcCCCC
Q 007432 10 PLGFRFRP-TDEELVDFYLRMKINGHND 36 (604)
Q Consensus 10 PpGFRF~P-TDEELI~~YLr~KI~G~pl 36 (604)
|.|+.|.. |++||-. ||-.|+...-+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 67999999 9999987 69999986643
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=8.40 E-value=1.4e+02 Score=29.65 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=15.6
Q ss_pred CCceeCCChHHHHHHHHHHHH
Q 007432 11 LGFRFRPTDEELVDFYLRMKI 31 (604)
Q Consensus 11 pGFRF~PTDEELI~~YLr~KI 31 (604)
-|..+.||++|+|.|-..+++
T Consensus 157 ~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 157 SGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 389999999999998654443
No 7
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.75 E-value=1.5e+02 Score=25.89 Aligned_cols=25 Identities=4% Similarity=0.159 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhh
Q 007432 577 FAVLFRAAAVVVMFAILVSTWRCLC 601 (604)
Q Consensus 577 s~~~~~~a~vlv~~~~l~~~w~~l~ 601 (604)
+.++++..+++..++++..||.+|.
T Consensus 70 P~~VLv~sl~Fi~~Vi~Lhi~~K~~ 94 (96)
T 2wwb_C 70 PVPVLVMSLLFIASVFMLHIWGKYT 94 (96)
T ss_dssp SCSHHHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEehhhHHHHHHHHHHHHHhhhhc
Confidence 4566677777777888889998875
No 8
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=7.35 E-value=1.4e+02 Score=21.97 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.5
Q ss_pred cCcceeEeeccCCCC
Q 007432 443 IVATGIRTRMRNPQS 457 (604)
Q Consensus 443 ~~gtgI~~R~R~~q~ 457 (604)
.=|.|++.|+|.-.+
T Consensus 17 tCG~G~~~R~r~C~~ 31 (49)
T 2bbx_A 17 TCGKGTRSRKREILH 31 (49)
T ss_dssp SSSSSEEEEECCCSS
T ss_pred cCCCCeEEEEeeeCC
Confidence 467899999998876
No 9
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=7.13 E-value=1.5e+02 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=17.4
Q ss_pred cCcceeEeeccCCCCCCcccCc
Q 007432 443 IVATGIRTRMRNPQSLPYREGF 464 (604)
Q Consensus 443 ~~gtgI~~R~R~~q~~~~~~n~ 464 (604)
.=|.||+.|+|.-.+.++.+++
T Consensus 32 TCG~Gvq~R~R~C~nP~P~~~~ 53 (77)
T 3vdj_A 32 TCGNGIQVRIKPGSANKPKDEL 53 (77)
T ss_dssp SSSEEEEEEECGGGTTSCGGGC
T ss_pred cCCCCeEEeeecCCCCCCcccC
Confidence 4689999999998887775543
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=6.54 E-value=1.7e+02 Score=29.38 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=14.6
Q ss_pred CCCCceeCCChHHHHHHHH
Q 007432 9 LPLGFRFRPTDEELVDFYL 27 (604)
Q Consensus 9 LPpGFRF~PTDEELI~~YL 27 (604)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 558999999999973
Done!