Query 007434
Match_columns 604
No_of_seqs 378 out of 3620
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 23:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 1.4E-52 3E-57 427.5 47.8 474 24-590 397-884 (890)
2 PRK10490 sensor protein KdpD; 100.0 3.4E-42 7.5E-47 383.6 52.2 421 76-589 462-886 (895)
3 TIGR02916 PEP_his_kin putative 100.0 9.6E-38 2.1E-42 342.7 50.5 386 126-584 285-679 (679)
4 PRK13837 two-component VirA-li 100.0 5.8E-37 1.2E-41 343.6 51.8 417 126-590 259-680 (828)
5 COG5002 VicK Signal transducti 100.0 2.3E-39 5.1E-44 297.9 18.7 227 342-590 223-453 (459)
6 PRK11091 aerobic respiration c 100.0 3.3E-36 7.1E-41 337.9 42.4 231 340-590 279-510 (779)
7 COG4251 Bacteriophytochrome (l 100.0 5E-35 1.1E-39 289.4 42.6 409 152-590 141-746 (750)
8 PRK10618 phosphotransfer inter 100.0 2E-35 4.3E-40 325.7 33.6 242 328-588 434-675 (894)
9 PRK09303 adaptive-response sen 100.0 1.2E-34 2.6E-39 296.1 32.3 235 329-586 136-378 (380)
10 PRK10841 hybrid sensory kinase 100.0 1.5E-34 3.2E-39 324.0 33.4 239 330-589 433-671 (924)
11 COG4191 Signal transduction hi 100.0 2.9E-31 6.2E-36 263.8 50.1 214 342-585 382-601 (603)
12 COG3275 LytS Putative regulato 100.0 1.7E-32 3.7E-37 263.3 37.3 436 23-588 103-554 (557)
13 PRK11107 hybrid sensory histid 100.0 2.4E-31 5.1E-36 305.5 54.4 248 327-590 276-523 (919)
14 TIGR02956 TMAO_torS TMAO reduc 100.0 1.2E-32 2.5E-37 317.7 37.3 238 331-590 451-688 (968)
15 PRK15347 two component system 100.0 9.9E-33 2.1E-37 316.8 34.7 241 323-588 377-617 (921)
16 PRK11466 hybrid sensory histid 100.0 3E-32 6.4E-37 312.1 34.7 246 319-589 419-666 (914)
17 PRK11006 phoR phosphate regulo 100.0 6.1E-31 1.3E-35 274.8 38.0 221 343-587 203-425 (430)
18 COG3852 NtrB Signal transducti 100.0 1.7E-31 3.7E-36 242.8 24.4 222 342-587 130-356 (363)
19 PRK10604 sensor protein RstB; 100.0 1.1E-30 2.3E-35 272.5 29.6 236 323-588 191-426 (433)
20 PRK10364 sensor protein ZraS; 100.0 2E-28 4.3E-33 258.1 45.9 215 342-588 235-451 (457)
21 TIGR02938 nifL_nitrog nitrogen 100.0 5.2E-30 1.1E-34 274.1 28.9 216 342-585 274-494 (494)
22 PRK10815 sensor protein PhoQ; 100.0 1.4E-29 3.1E-34 266.0 30.4 237 322-587 244-480 (485)
23 PRK09959 hybrid sensory histid 100.0 8.4E-30 1.8E-34 299.3 32.0 239 333-589 701-940 (1197)
24 PRK10549 signal transduction h 100.0 1.9E-28 4.1E-33 259.7 30.1 245 321-589 217-462 (466)
25 TIGR03785 marine_sort_HK prote 100.0 2.2E-28 4.8E-33 267.0 30.6 241 321-584 462-703 (703)
26 COG5000 NtrY Signal transducti 100.0 2.4E-27 5.2E-32 234.8 34.5 211 342-585 484-708 (712)
27 PRK10600 nitrate/nitrite senso 100.0 1.5E-25 3.3E-30 242.1 51.7 354 127-587 203-558 (569)
28 PRK10755 sensor protein BasS/P 100.0 2.9E-28 6.4E-33 248.5 28.6 213 344-587 137-352 (356)
29 COG3850 NarQ Signal transducti 100.0 2.5E-25 5.5E-30 218.0 46.2 343 120-584 222-567 (574)
30 TIGR01386 cztS_silS_copS heavy 100.0 5.7E-26 1.2E-30 240.3 43.7 238 321-584 218-457 (457)
31 PRK09470 cpxA two-component se 100.0 6.9E-27 1.5E-31 247.6 30.8 240 321-587 220-459 (461)
32 PRK09835 sensor kinase CusS; P 100.0 1.3E-26 2.7E-31 246.9 31.4 241 321-586 239-481 (482)
33 TIGR02966 phoR_proteo phosphat 100.0 4.3E-27 9.4E-32 237.9 26.2 217 344-583 114-333 (333)
34 PRK09467 envZ osmolarity senso 100.0 1.3E-26 2.9E-31 243.3 28.6 229 321-586 206-434 (435)
35 PRK10337 sensor protein QseC; 100.0 1.9E-26 4.1E-31 243.1 29.7 234 321-583 214-449 (449)
36 PRK11073 glnL nitrogen regulat 100.0 1.3E-26 2.8E-31 235.8 27.4 219 342-586 128-348 (348)
37 PRK11100 sensory histidine kin 100.0 2E-26 4.3E-31 245.2 30.0 240 321-586 234-474 (475)
38 PRK11360 sensory histidine kin 99.9 1.2E-25 2.6E-30 246.8 29.3 216 342-588 388-604 (607)
39 PRK11644 sensory histidine kin 99.9 2E-24 4.3E-29 227.0 33.1 246 290-585 247-494 (495)
40 PRK13557 histidine kinase; Pro 99.9 2E-24 4.4E-29 233.6 29.4 232 342-589 161-398 (540)
41 COG0642 BaeS Signal transducti 99.9 1E-23 2.2E-28 212.9 29.4 219 343-589 114-333 (336)
42 COG4192 Signal transduction hi 99.9 4E-23 8.7E-28 197.3 27.4 227 329-586 434-667 (673)
43 PRK13560 hypothetical protein; 99.9 5.3E-24 1.1E-28 241.8 25.8 211 330-587 591-805 (807)
44 COG3290 CitA Signal transducti 99.9 2.6E-21 5.7E-26 192.1 40.0 196 346-589 335-535 (537)
45 PRK11086 sensory histidine kin 99.9 2.1E-22 4.6E-27 217.8 32.1 195 346-589 341-539 (542)
46 PRK10935 nitrate/nitrite senso 99.9 7.3E-20 1.6E-24 198.9 47.7 250 268-588 311-562 (565)
47 PRK15053 dpiB sensor histidine 99.9 8.9E-22 1.9E-26 212.7 25.4 196 347-588 341-542 (545)
48 COG3851 UhpB Signal transducti 99.9 1.4E-19 3.1E-24 168.2 28.3 245 290-584 248-493 (497)
49 KOG0519 Sensory transduction h 99.8 1E-22 2.3E-27 222.3 1.2 430 2-592 30-495 (786)
50 PRK13559 hypothetical protein; 99.8 9.6E-20 2.1E-24 186.2 21.1 186 344-586 170-360 (361)
51 COG4585 Signal transduction hi 99.8 3.5E-18 7.5E-23 174.0 29.0 195 342-585 169-365 (365)
52 PF02518 HATPase_c: Histidine 99.8 3.5E-20 7.6E-25 154.4 10.5 109 455-585 1-110 (111)
53 COG4564 Signal transduction hi 99.8 9.3E-16 2E-20 141.3 35.5 202 338-587 245-449 (459)
54 PRK10547 chemotaxis protein Ch 99.7 2.8E-16 6E-21 166.9 22.7 147 417-588 343-526 (670)
55 COG3920 Signal transduction hi 99.7 9.4E-14 2E-18 128.5 26.2 196 343-588 18-218 (221)
56 COG0643 CheA Chemotaxis protei 99.6 2E-14 4.2E-19 153.5 20.1 147 416-587 389-575 (716)
57 COG2972 Predicted signal trans 99.6 4.5E-13 9.8E-18 139.9 24.4 190 342-587 256-454 (456)
58 smart00387 HATPase_c Histidine 99.5 3.1E-13 6.7E-18 112.2 13.1 110 455-586 1-111 (111)
59 PRK04184 DNA topoisomerase VI 99.5 2.1E-13 4.5E-18 139.8 12.7 116 454-587 31-154 (535)
60 PRK15429 formate hydrogenlyase 99.4 2.4E-11 5.1E-16 133.5 26.0 189 129-331 170-365 (686)
61 PRK11061 fused phosphoenolpyru 99.4 6.4E-11 1.4E-15 129.2 24.3 160 143-316 2-163 (748)
62 TIGR01925 spIIAB anti-sigma F 99.3 1.1E-11 2.5E-16 107.2 12.2 97 456-583 36-136 (137)
63 cd00075 HATPase_c Histidine ki 99.3 1.1E-11 2.4E-16 101.1 11.0 101 460-583 1-103 (103)
64 PRK14868 DNA topoisomerase VI 99.3 1.7E-11 3.7E-16 128.2 14.1 129 437-586 23-160 (795)
65 PRK03660 anti-sigma F factor; 99.3 2.6E-11 5.7E-16 106.2 12.8 103 456-589 36-142 (146)
66 TIGR01052 top6b DNA topoisomer 99.3 3.2E-11 6.9E-16 122.5 12.8 106 453-579 22-134 (488)
67 TIGR01817 nifA Nif-specific re 99.3 3.1E-10 6.8E-15 121.2 20.7 162 142-317 3-166 (534)
68 PRK14867 DNA topoisomerase VI 99.2 5.4E-11 1.2E-15 124.5 12.1 112 456-587 33-151 (659)
69 PRK04069 serine-protein kinase 99.2 2.8E-10 6E-15 100.8 12.8 111 456-595 39-153 (161)
70 KOG0787 Dehydrogenase kinase [ 99.1 7.8E-09 1.7E-13 98.2 20.8 192 375-587 170-382 (414)
71 PF13492 GAF_3: GAF domain; PD 99.1 2E-09 4.3E-14 92.1 14.1 129 158-309 1-129 (129)
72 PF00512 HisKA: His Kinase A ( 99.1 1.6E-09 3.5E-14 80.8 9.9 65 344-408 2-68 (68)
73 TIGR01924 rsbW_low_gc serine-p 99.0 4.3E-09 9.3E-14 92.7 12.9 109 457-594 40-152 (159)
74 PF01590 GAF: GAF domain; Int 99.0 3.3E-09 7.1E-14 93.9 12.0 136 158-307 1-154 (154)
75 PRK05022 anaerobic nitric oxid 99.0 2.9E-08 6.2E-13 105.2 20.3 168 143-326 3-175 (509)
76 PRK15429 formate hydrogenlyase 98.9 3.3E-08 7.1E-13 108.9 18.6 171 143-328 8-182 (686)
77 smart00065 GAF Domain present 98.9 1.1E-07 2.3E-12 82.5 15.2 144 158-315 1-147 (149)
78 PF13185 GAF_2: GAF domain; PD 98.8 3.8E-08 8.3E-13 86.3 11.8 136 157-308 2-148 (148)
79 PF14501 HATPase_c_5: GHKL dom 98.8 8.8E-08 1.9E-12 77.4 11.9 95 456-584 2-100 (100)
80 COG3605 PtsP Signal transducti 98.6 5.6E-06 1.2E-10 83.5 21.0 155 145-313 4-160 (756)
81 COG1389 DNA topoisomerase VI, 98.6 5E-07 1.1E-11 88.3 10.9 114 456-588 33-153 (538)
82 PF13581 HATPase_c_2: Histidin 98.5 8.3E-07 1.8E-11 75.3 10.1 93 456-582 28-124 (125)
83 COG3604 FhlA Transcriptional r 98.4 1.6E-05 3.5E-10 79.6 17.2 175 143-331 33-212 (550)
84 TIGR00585 mutl DNA mismatch re 98.3 3E-06 6.5E-11 83.9 10.9 87 458-571 21-113 (312)
85 COG2172 RsbW Anti-sigma regula 98.3 1.2E-05 2.6E-10 69.1 12.0 86 456-571 37-127 (146)
86 smart00388 HisKA His Kinase A 98.3 6.1E-06 1.3E-10 60.6 8.7 63 344-406 2-64 (66)
87 COG2203 FhlA FOG: GAF domain [ 98.2 3E-06 6.6E-11 75.8 5.9 159 143-315 3-170 (175)
88 PRK13558 bacterio-opsin activa 98.1 0.00018 3.9E-09 80.0 20.2 147 145-311 289-439 (665)
89 cd00082 HisKA Histidine Kinase 97.9 7.4E-05 1.6E-09 54.4 8.4 62 343-404 3-65 (65)
90 PRK00095 mutL DNA mismatch rep 97.8 8.5E-05 1.8E-09 80.4 10.5 86 459-571 22-113 (617)
91 KOG0519 Sensory transduction h 97.8 1.2E-05 2.6E-10 89.2 3.3 329 242-570 282-620 (786)
92 PF13589 HATPase_c_3: Histidin 97.8 1.4E-05 2.9E-10 68.7 2.4 103 461-586 4-108 (137)
93 COG1956 GAF domain-containing 97.7 0.0033 7.1E-08 53.3 15.3 122 163-306 37-159 (163)
94 TIGR02851 spore_V_T stage V sp 97.3 0.0059 1.3E-07 54.5 12.6 128 156-308 51-180 (180)
95 PF11849 DUF3369: Domain of un 97.2 0.021 4.6E-07 51.1 15.6 151 131-317 9-172 (174)
96 PRK05644 gyrB DNA gyrase subun 96.7 0.0061 1.3E-07 66.0 9.1 82 456-560 34-130 (638)
97 PRK05218 heat shock protein 90 96.7 0.0034 7.5E-08 67.7 6.7 23 512-534 74-96 (613)
98 PRK05559 DNA topoisomerase IV 96.6 0.0043 9.2E-08 67.2 6.8 82 456-560 34-130 (631)
99 COG0323 MutL DNA mismatch repa 96.5 0.0021 4.5E-08 69.5 4.1 60 459-540 23-82 (638)
100 PF04340 DUF484: Protein of un 96.5 0.013 2.8E-07 55.0 8.8 162 122-309 52-222 (225)
101 PRK14083 HSP90 family protein; 96.5 0.0013 2.9E-08 70.1 2.4 76 462-558 26-117 (601)
102 COG0326 HtpG Molecular chapero 96.3 0.006 1.3E-07 63.8 5.5 46 464-529 32-92 (623)
103 PTZ00272 heat shock protein 83 96.2 0.0048 1E-07 66.8 4.2 48 464-531 30-92 (701)
104 COG5385 Uncharacterized protei 96.1 0.73 1.6E-05 39.3 18.7 192 346-582 17-211 (214)
105 TIGR01059 gyrB DNA gyrase, B s 96.0 0.029 6.2E-07 61.4 9.1 82 456-560 27-123 (654)
106 TIGR01055 parE_Gneg DNA topois 95.6 0.037 8E-07 59.9 8.0 79 459-560 30-123 (625)
107 PF07568 HisKA_2: Histidine ki 95.5 0.15 3.3E-06 38.3 8.9 73 351-432 2-74 (76)
108 smart00433 TOP2c Topoisomerase 95.5 0.024 5.1E-07 61.2 5.9 76 460-558 2-92 (594)
109 COG5381 Uncharacterized protei 95.4 0.037 8E-07 45.7 5.4 86 458-566 62-158 (184)
110 PTZ00130 heat shock protein 90 95.4 0.017 3.7E-07 62.9 4.4 73 512-584 136-241 (814)
111 PF10090 DUF2328: Uncharacteri 94.9 2.8 6.1E-05 37.7 18.4 169 361-571 3-174 (182)
112 PRK10963 hypothetical protein; 94.7 2.5 5.4E-05 39.5 16.3 161 122-309 49-218 (223)
113 COG4251 Bacteriophytochrome (l 94.3 7.7 0.00017 41.2 19.8 50 136-185 320-369 (750)
114 PRK14939 gyrB DNA gyrase subun 94.0 0.049 1.1E-06 59.7 3.8 46 458-526 36-84 (756)
115 KOG1979 DNA mismatch repair pr 92.5 0.18 4E-06 51.8 4.9 59 460-540 28-86 (694)
116 COG3159 Uncharacterized protei 91.8 6.9 0.00015 35.3 13.2 161 122-309 50-215 (218)
117 KOG1978 DNA mismatch repair pr 91.7 0.18 3.9E-06 53.2 3.9 58 460-539 21-78 (672)
118 PLN03237 DNA topoisomerase 2; 90.7 0.44 9.6E-06 55.6 6.1 83 458-562 76-174 (1465)
119 PF14689 SPOB_a: Sensor_kinase 89.4 2.4 5.2E-05 30.3 6.9 44 345-392 13-56 (62)
120 PTZ00108 DNA topoisomerase 2-l 89.2 0.48 1E-05 55.4 4.9 99 459-583 57-174 (1388)
121 KOG1977 DNA mismatch repair pr 89.2 0.6 1.3E-05 49.3 5.1 60 458-540 20-79 (1142)
122 PF06018 CodY: CodY GAF-like d 88.0 17 0.00037 32.3 12.6 47 268-315 115-161 (177)
123 TIGR01058 parE_Gpos DNA topois 88.0 0.44 9.5E-06 51.8 3.5 49 456-527 31-82 (637)
124 PHA02569 39 DNA topoisomerase 87.1 0.42 9.2E-06 51.5 2.7 81 458-562 44-144 (602)
125 PLN03128 DNA topoisomerase 2; 85.5 1.3 2.9E-05 51.1 5.7 48 458-527 51-102 (1135)
126 PF11152 DUF2930: Protein of u 82.6 37 0.00081 30.7 12.7 74 210-302 120-193 (195)
127 PF06580 His_kinase: Histidine 82.4 6.9 0.00015 29.8 6.8 65 346-432 4-69 (82)
128 COG0187 GyrB Type IIA topoisom 81.7 0.4 8.6E-06 50.5 -0.4 79 458-559 35-128 (635)
129 PF07730 HisKA_3: Histidine ki 80.6 17 0.00037 26.2 8.3 45 344-388 2-48 (68)
130 PTZ00109 DNA gyrase subunit b; 80.2 0.39 8.4E-06 53.1 -1.1 49 457-528 127-178 (903)
131 PF07536 HWE_HK: HWE histidine 79.7 8 0.00017 29.6 6.3 70 351-432 2-71 (83)
132 PF15086 UPF0542: Uncharacteri 79.6 20 0.00044 26.0 7.6 54 76-147 13-66 (74)
133 PF07694 5TM-5TMR_LYT: 5TMR of 78.8 24 0.00051 31.2 10.2 79 26-106 83-164 (169)
134 KOG3689 Cyclic nucleotide phos 77.4 19 0.0004 39.4 10.3 154 154-320 178-343 (707)
135 COG1620 LldP L-lactate permeas 76.7 11 0.00023 39.4 7.9 51 24-76 182-232 (522)
136 PRK04158 transcriptional repre 75.1 76 0.0016 30.0 18.4 47 268-315 117-163 (256)
137 KOG0355 DNA topoisomerase type 74.5 5 0.00011 43.8 5.1 63 457-539 51-122 (842)
138 KOG0019 Molecular chaperone (H 72.2 7.5 0.00016 40.9 5.6 19 511-529 102-120 (656)
139 PF05297 Herpes_LMP1: Herpesvi 71.3 1.3 2.8E-05 41.4 0.0 34 16-49 36-77 (381)
140 PF10131 PTPS_related: 6-pyruv 70.7 41 0.0009 36.8 11.2 59 14-73 65-123 (616)
141 PRK10263 DNA translocase FtsK; 70.2 31 0.00067 40.6 10.3 16 27-42 78-93 (1355)
142 KOG1608 Protein transporter of 69.9 1.1E+02 0.0023 29.4 12.9 32 48-79 243-275 (374)
143 PF04279 IspA: Intracellular s 66.1 69 0.0015 28.6 9.8 75 22-104 18-95 (176)
144 COG5393 Predicted membrane pro 63.7 78 0.0017 25.6 9.7 34 71-108 71-104 (131)
145 COG4465 CodY Pleiotropic trans 62.8 1.2E+02 0.0027 27.6 16.6 47 268-315 120-166 (261)
146 PF10066 DUF2304: Uncharacteri 62.7 81 0.0017 25.8 9.0 10 39-48 19-28 (115)
147 PF14150 YesK: YesK-like prote 61.8 68 0.0015 24.3 9.4 47 27-75 3-50 (81)
148 cd08766 Cyt_b561_ACYB-1_like P 59.3 1.2E+02 0.0025 26.1 9.8 18 82-99 115-132 (144)
149 PRK02975 putative common antig 58.5 22 0.00048 34.9 5.5 38 28-69 159-196 (450)
150 COG4587 ABC-type uncharacteriz 54.4 1E+02 0.0022 29.0 8.7 80 16-96 102-187 (268)
151 PF05449 DUF754: Protein of un 54.1 97 0.0021 23.7 7.5 45 29-75 4-48 (83)
152 PF03591 AzlC: AzlC protein; 53.9 1.4E+02 0.0031 25.5 9.9 49 27-78 2-50 (143)
153 KOG0020 Endoplasmic reticulum 53.4 13 0.00028 37.9 3.2 18 511-528 142-159 (785)
154 PF07851 TMPIT: TMPIT-like pro 53.1 2.4E+02 0.0053 28.0 12.5 60 342-403 32-91 (330)
155 PF04973 NMN_transporter: Nico 53.0 1.5E+02 0.0033 26.5 9.9 81 18-106 41-131 (181)
156 COG4708 Predicted membrane pro 52.8 74 0.0016 26.9 6.9 31 25-55 74-106 (169)
157 PRK00259 intracellular septati 52.3 1.2E+02 0.0026 27.2 8.8 57 23-79 19-78 (179)
158 PF10966 DUF2768: Protein of u 52.0 23 0.0005 24.8 3.3 40 27-66 6-46 (58)
159 PF03729 DUF308: Short repeat 51.7 68 0.0015 23.2 6.3 29 47-75 17-45 (72)
160 PF14965 BRI3BP: Negative regu 51.1 1.7E+02 0.0038 25.7 9.4 94 28-141 83-176 (177)
161 COG2865 Predicted transcriptio 50.4 1.8E+02 0.0039 30.5 10.9 98 461-586 272-381 (467)
162 TIGR02921 PEP_integral PEP-CTE 50.2 1.4E+02 0.003 31.8 9.9 38 21-60 109-146 (952)
163 TIGR02787 codY_Gpos GTP-sensin 49.1 2.3E+02 0.0051 26.6 16.9 47 268-315 114-160 (251)
164 PF02652 Lactate_perm: L-lacta 48.2 93 0.002 33.3 8.8 50 23-74 179-228 (522)
165 TIGR00346 azlC 4-azaleucine re 48.2 1.6E+02 0.0035 27.4 9.4 49 25-76 9-57 (221)
166 PRK05415 hypothetical protein; 47.7 3E+02 0.0065 27.5 11.7 24 148-171 172-195 (341)
167 PF10693 DUF2499: Protein of u 47.7 1.3E+02 0.0028 23.3 9.0 28 80-107 62-89 (90)
168 PF10856 DUF2678: Protein of u 47.6 34 0.00074 27.7 4.1 49 23-71 29-78 (118)
169 PF11177 DUF2964: Protein of u 47.6 81 0.0017 22.5 5.4 36 50-85 5-40 (62)
170 PF10086 DUF2324: Putative mem 43.0 1.4E+02 0.0029 28.0 8.1 37 32-68 2-38 (223)
171 COG3071 HemY Uncharacterized e 42.6 95 0.0021 31.3 7.2 69 52-120 2-73 (400)
172 PRK13922 rod shape-determining 41.8 3.3E+02 0.0072 26.3 11.9 31 125-155 77-107 (276)
173 COG4097 Predicted ferric reduc 41.6 2.3E+02 0.0049 28.6 9.4 59 25-84 128-187 (438)
174 PF11694 DUF3290: Protein of u 41.5 78 0.0017 27.3 5.8 33 29-61 24-56 (149)
175 cd00284 Cytochrome_b_N Cytochr 41.2 2.7E+02 0.0057 25.5 9.5 85 18-102 33-124 (200)
176 PF13042 DUF3902: Protein of u 40.7 2.3E+02 0.005 24.2 9.0 75 27-103 38-120 (161)
177 TIGR02921 PEP_integral PEP-CTE 40.6 96 0.0021 32.9 7.1 29 29-58 158-186 (952)
178 PF12805 FUSC-like: FUSC-like 40.6 3.5E+02 0.0076 26.2 25.6 44 70-113 56-100 (284)
179 PF10011 DUF2254: Predicted me 39.0 4.4E+02 0.0095 26.9 12.2 39 22-60 53-103 (371)
180 TIGR00219 mreC rod shape-deter 38.6 2.1E+02 0.0045 27.9 8.9 37 310-346 69-105 (283)
181 COG4965 TadB Flp pilus assembl 38.5 4E+02 0.0086 26.2 10.8 30 143-172 139-168 (309)
182 PF07492 Trehalase_Ca-bi: Neut 38.4 23 0.0005 20.8 1.4 11 511-521 14-24 (30)
183 PF10777 YlaC: Inner membrane 38.2 1.3E+02 0.0028 25.7 6.3 49 56-111 37-85 (155)
184 PRK11388 DNA-binding transcrip 38.0 5.8E+02 0.013 28.3 13.5 121 165-307 59-189 (638)
185 PF07155 ECF-ribofla_trS: ECF- 37.9 2.8E+02 0.0061 24.3 10.7 43 29-71 79-125 (169)
186 COG1480 Predicted membrane-ass 37.1 3.2E+02 0.0069 30.0 10.4 30 82-111 426-456 (700)
187 COG3284 AcoR Transcriptional a 37.0 4.5E+02 0.0097 28.6 11.5 132 163-316 72-213 (606)
188 PF10329 DUF2417: Region of un 36.2 3.7E+02 0.008 25.2 14.2 36 61-96 79-114 (232)
189 COG3462 Predicted membrane pro 36.2 2.3E+02 0.0049 22.8 7.2 20 89-108 51-70 (117)
190 COG3447 Predicted integral mem 35.8 3.6E+02 0.0078 26.4 9.7 24 56-79 237-260 (308)
191 PF10754 DUF2569: Protein of u 35.8 2.9E+02 0.0062 23.8 9.4 41 22-62 56-97 (149)
192 cd08765 Cyt_b561_CYBRD1 Verteb 35.3 3E+02 0.0065 23.9 9.8 16 82-97 122-137 (153)
193 PF03956 DUF340: Membrane prot 35.2 1.2E+02 0.0026 27.5 6.2 87 22-108 24-121 (191)
194 MTH00145 CYTB cytochrome b; Pr 35.0 2.4E+02 0.0053 28.8 9.1 80 18-97 42-126 (379)
195 KOG2493 Na+/Pi symporter [Inor 34.9 1.6E+02 0.0035 30.5 7.6 69 10-79 154-222 (512)
196 PF14387 DUF4418: Domain of un 34.8 1.8E+02 0.0038 24.3 6.6 36 17-52 31-66 (124)
197 PF12282 H_kinase_N: Signal tr 34.0 3E+02 0.0066 23.6 8.9 60 168-228 28-95 (145)
198 COG1585 Membrane protein impli 33.8 1.4E+02 0.0031 25.4 6.2 19 90-108 50-68 (140)
199 TIGR01620 hyp_HI0043 conserved 33.8 4.6E+02 0.0099 25.6 11.3 25 146-170 119-143 (289)
200 TIGR00145 FTR1 family protein. 33.8 4.6E+02 0.0099 25.5 12.4 24 32-55 19-42 (283)
201 KOG3088 Secretory carrier memb 32.9 57 0.0012 31.1 3.8 23 310-332 63-85 (313)
202 PF06785 UPF0242: Uncharacteri 32.3 5E+02 0.011 25.6 23.5 27 378-404 199-225 (401)
203 KOG0994 Extracellular matrix g 32.0 7.6E+02 0.016 29.2 12.4 21 338-358 1467-1487(1758)
204 KOG3915 Transcription regulato 31.9 4.5E+02 0.0097 27.1 9.9 28 293-320 502-529 (641)
205 cd08763 Cyt_b561_CYB561 Verteb 31.5 3.4E+02 0.0073 23.3 9.8 12 68-79 92-103 (143)
206 COG0813 DeoD Purine-nucleoside 31.1 53 0.0012 30.1 3.2 51 452-524 18-69 (236)
207 PRK09458 pspB phage shock prot 31.0 2.1E+02 0.0046 21.3 5.7 7 136-142 51-57 (75)
208 COG1296 AzlC Predicted branche 31.0 4.6E+02 0.01 24.7 10.9 81 22-110 16-96 (238)
209 COG4325 Predicted membrane pro 30.2 6E+02 0.013 25.8 13.1 48 22-69 85-145 (464)
210 COG2311 Predicted membrane pro 29.9 5.9E+02 0.013 26.1 10.6 53 22-74 59-118 (394)
211 PF13974 YebO: YebO-like prote 29.8 2.5E+02 0.0054 21.3 6.2 6 103-108 12-17 (80)
212 PF10785 NADH-u_ox-rdase: NADH 29.8 1.8E+02 0.0038 22.4 5.5 27 22-48 21-47 (86)
213 COG1033 Predicted exporters of 29.5 2.6E+02 0.0056 31.3 8.7 43 23-72 195-239 (727)
214 PF06946 Phage_holin_5: Phage 29.0 2.8E+02 0.0061 21.7 6.6 18 39-56 21-38 (93)
215 KOG0249 LAR-interacting protei 28.9 6.4E+02 0.014 27.8 10.9 50 291-340 140-189 (916)
216 PF12822 DUF3816: Protein of u 28.8 4E+02 0.0086 23.3 10.4 47 28-74 76-122 (172)
217 COG4377 Predicted membrane pro 28.5 1.2E+02 0.0025 27.4 4.7 45 18-65 7-51 (258)
218 TIGR02230 ATPase_gene1 F0F1-AT 28.3 1.3E+02 0.0029 23.9 4.6 21 31-51 50-70 (100)
219 PF04678 DUF607: Protein of un 27.9 4.4E+02 0.0095 23.6 8.6 44 59-108 97-140 (180)
220 COG1938 Archaeal enzymes of AT 27.8 1.8E+02 0.004 27.4 6.2 64 272-335 169-232 (244)
221 PF13321 DUF4084: Domain of un 27.7 1.5E+02 0.0033 27.3 5.5 58 23-80 160-221 (304)
222 COG4420 Predicted membrane pro 27.6 4.5E+02 0.0098 23.6 12.2 7 80-86 86-92 (191)
223 COG2119 Predicted membrane pro 27.6 3E+02 0.0065 24.7 7.1 58 23-89 6-73 (190)
224 MTH00033 CYTB cytochrome b; Pr 27.2 3.9E+02 0.0084 27.4 9.0 80 18-97 38-122 (383)
225 MTH00100 CYTB cytochrome b; Pr 27.0 4.9E+02 0.011 26.6 9.7 80 18-97 41-125 (379)
226 PF07672 MFS_Mycoplasma: Mycop 27.0 4.7E+02 0.01 25.1 8.8 58 51-116 172-229 (267)
227 PF07332 DUF1469: Protein of u 26.9 3.5E+02 0.0076 22.1 8.8 9 127-135 109-117 (121)
228 PF13651 EcoRI_methylase: Aden 26.7 22 0.00048 34.7 0.1 9 4-12 39-47 (336)
229 PF14248 DUF4345: Domain of un 26.6 3.7E+02 0.008 22.2 8.2 51 28-80 50-100 (124)
230 PF00556 LHC: Antenna complex 26.5 1.1E+02 0.0023 19.7 3.2 24 50-73 10-33 (40)
231 PF06105 Aph-1: Aph-1 protein; 26.3 5.6E+02 0.012 24.2 9.5 31 49-79 27-57 (238)
232 COG3835 CdaR Sugar diacid util 26.1 6.8E+02 0.015 25.1 11.9 83 212-322 46-128 (376)
233 PF05915 DUF872: Eukaryotic pr 25.8 2.1E+02 0.0046 23.5 5.6 62 46-107 34-102 (115)
234 KOG4571 Activating transcripti 25.8 3E+02 0.0064 26.6 7.2 30 323-352 260-289 (294)
235 KOG3088 Secretory carrier memb 25.5 4.3E+02 0.0094 25.5 8.1 23 24-46 163-185 (313)
236 TIGR02976 phageshock_pspB phag 25.2 3E+02 0.0064 20.6 5.8 16 91-106 8-23 (75)
237 KOG2736 Presenilin [Signal tra 25.1 65 0.0014 32.0 2.9 22 94-115 163-184 (406)
238 PF06103 DUF948: Bacterial pro 25.0 3.2E+02 0.007 21.0 8.0 8 128-135 37-44 (90)
239 COG1295 Rbn Ribonuclease BN fa 24.9 6.7E+02 0.015 24.6 11.1 31 35-67 202-233 (303)
240 PF13748 ABC_membrane_3: ABC t 24.6 5.9E+02 0.013 23.9 10.6 23 118-140 162-184 (237)
241 PF14979 TMEM52: Transmembrane 24.6 65 0.0014 27.3 2.4 16 53-68 23-38 (154)
242 MTH00053 CYTB cytochrome b; Pr 24.6 4.6E+02 0.01 26.8 9.0 80 18-97 42-126 (381)
243 PF12725 DUF3810: Protein of u 24.6 1.2E+02 0.0027 30.1 4.8 24 23-46 25-48 (318)
244 PF15110 TMEM141: TMEM141 prot 24.5 3.4E+02 0.0075 21.1 6.0 32 25-56 27-62 (94)
245 COG3619 Predicted membrane pro 24.4 4E+02 0.0086 24.9 7.8 56 23-79 58-113 (226)
246 PF04544 Herpes_UL20: Herpesvi 24.3 5.2E+02 0.011 23.1 8.7 19 29-47 31-49 (179)
247 PF04995 CcmD: Heme exporter p 23.7 2.3E+02 0.0049 18.7 5.9 14 91-104 11-24 (46)
248 KOG3705 Glycoprotein 6-alpha-L 23.5 7.9E+02 0.017 25.0 11.5 49 383-431 157-205 (580)
249 PF06692 MNSV_P7B: Melon necro 23.4 1.2E+02 0.0026 20.8 3.0 14 1-14 1-16 (61)
250 PF03188 Cytochrom_B561: Eukar 23.4 4.4E+02 0.0095 22.0 9.8 86 17-103 34-130 (137)
251 PF06899 WzyE: WzyE protein; 23.3 2.7E+02 0.0058 28.3 6.7 40 26-69 156-195 (448)
252 PRK09695 glycolate transporter 23.2 2.8E+02 0.0061 30.0 7.5 73 24-107 195-267 (560)
253 cd08764 Cyt_b561_CG1275_like N 22.5 6.3E+02 0.014 23.4 9.7 10 158-167 170-179 (214)
254 cd08760 Cyt_b561_FRRS1_like Eu 22.3 5.8E+02 0.012 22.9 10.1 22 82-103 139-160 (191)
255 PRK00247 putative inner membra 22.2 7.2E+02 0.016 25.8 9.8 13 56-68 232-244 (429)
256 TIGR00634 recN DNA repair prot 22.1 1E+03 0.022 25.8 15.4 36 291-326 145-180 (563)
257 PF13829 DUF4191: Domain of un 21.9 4.2E+02 0.0091 24.7 7.3 26 40-67 16-41 (224)
258 PF10716 NdhL: NADH dehydrogen 21.9 1.1E+02 0.0025 22.9 3.0 20 25-44 21-40 (81)
259 MTH00086 CYTB cytochrome b; Pr 21.9 6E+02 0.013 25.7 9.1 80 18-97 30-114 (355)
260 PRK09776 putative diguanylate 21.8 1.1E+03 0.023 28.1 13.0 21 128-148 270-290 (1092)
261 PRK14872 rod shape-determining 21.5 7.3E+02 0.016 24.8 9.4 21 122-142 62-82 (337)
262 COG4042 Predicted membrane pro 21.3 2.8E+02 0.006 21.3 4.8 57 16-72 7-66 (104)
263 MTH00016 CYTB cytochrome b; Va 21.2 5.2E+02 0.011 26.4 8.6 79 19-97 43-126 (378)
264 PF05651 Diacid_rec: Putative 21.1 5.1E+02 0.011 21.9 13.7 89 161-283 4-92 (135)
265 PF07698 7TM-7TMR_HD: 7TM rece 21.0 6.1E+02 0.013 22.7 10.5 25 23-47 101-125 (194)
266 PF06005 DUF904: Protein of un 21.0 3.5E+02 0.0077 20.0 11.1 50 293-345 3-52 (72)
267 MTH00022 CYTB cytochrome b; Va 21.0 3.3E+02 0.0072 27.8 7.2 80 18-97 40-124 (379)
268 PF11833 DUF3353: Protein of u 20.8 2.3E+02 0.005 25.8 5.4 26 38-63 127-152 (194)
269 KOG2603 Oligosaccharyltransfer 20.6 1.1E+02 0.0023 29.9 3.3 40 28-67 183-224 (331)
270 PF03839 Sec62: Translocation 20.5 4.3E+02 0.0094 24.6 7.2 10 51-60 107-116 (224)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-52 Score=427.53 Aligned_cols=474 Identities=22% Similarity=0.334 Sum_probs=374.1
Q ss_pred hhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhh-------HHHhhHHhc---ccchhHHHHHHHHHHHH
Q 007434 24 SDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGA-------THLINLWTF---NMHSRTVAIVMTTAKVL 93 (604)
Q Consensus 24 sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~-------thl~~i~~~---~~~~~~~~~~~~~~k~~ 93 (604)
.|.++++.++.+-..+..+..+.-+...-.++.+.|.++++.-. .-+++++.| +.++.....+.....++
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~v~d~~y~v 476 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFAVSDPQYLV 476 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEEEecCchHH
Confidence 57777888887777777665554444444443333333322111 112223222 11122223344566888
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhh
Q 007434 94 TAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRT 173 (604)
Q Consensus 94 ta~vs~~tai~l~~llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~ 173 (604)
|..|++++|++...+ +..++++.+..++++++.+.|+++++.|+.+.+.++++..+.+.+.++
T Consensus 477 Tf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~ 539 (890)
T COG2205 477 TFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASL 539 (890)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEec
Q 007434 174 LALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVP 253 (604)
Q Consensus 174 l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~p 253 (604)
++.. +.+++++.++....+.+ +.+ -.+.+.....|++.++++.....+.-
T Consensus 540 ~~~~-v~i~l~~~~~~~~~~~~------~~~-l~~~d~aaa~W~~~~~~~AG~gTdTl---------------------- 589 (890)
T COG2205 540 LNQR-VVILLPDDNGKLQPLGN------PDG-LSADDRAAAQWAFENGKPAGAGTDTL---------------------- 589 (890)
T ss_pred hCCc-eEEEEecCCcccccccC------Ccc-ccHHHHHHhhchhhCCCccccCCCCC----------------------
Confidence 9977 66777776655311111 111 12234568899999999887765542
Q ss_pred cccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 254 LLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSA 333 (604)
Q Consensus 254 l~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~ 333 (604)
.+..+.++| +..++.+.|++.+.........+++..++.++++|+|.|+++..+.++.++.+-+
T Consensus 590 ----pg~~~~~lP-l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~----------- 653 (890)
T COG2205 590 ----PGAKYLYLP-LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA----------- 653 (890)
T ss_pred ----CCCceeEee-cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 111234455 7777888889888888777799999999999999999999999998875443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 007434 334 RREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET--EL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSL 410 (604)
Q Consensus 334 ~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~--~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~ 410 (604)
. ++.+.++.|++++||||||||++|.|.++.|... .. +++..+.+..|.+.++++..++.+|++++|++.+.+
T Consensus 654 ---~-e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~ 729 (890)
T COG2205 654 ---A-ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGV 729 (890)
T ss_pred ---H-HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCc
Confidence 1 2226778999999999999999999999998753 33 445788999999999999999999999999999999
Q ss_pred ceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEEecc
Q 007434 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN-ISITGFVAKS 489 (604)
Q Consensus 411 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~-i~i~~~~~~~ 489 (604)
+++.++..+.+++.+++..++.....+ .+.++++.+++ ++..|...++||+.||++||.||++++. |.|.+..+.+
T Consensus 730 ~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~ 806 (890)
T COG2205 730 NLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE 806 (890)
T ss_pred ccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc
Confidence 999999999999999999888655444 47777777776 5788999999999999999999998665 9999998887
Q ss_pred cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE 569 (604)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~ 569 (604)
. +.|+|.|+|+|||++.+++||++|++..+.. ...|.||||+||+.||+.|||+|++.
T Consensus 807 ~--------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~--~~~G~GLGLsIc~~iv~ahgG~I~a~ 864 (890)
T COG2205 807 N--------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKES--ATRGVGLGLAICRGIVEAHGGTISAE 864 (890)
T ss_pred e--------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCC--CCCCccccHHHHHHHHHHcCCeEEEE
Confidence 5 9999999999999999999999999988743 37899999999999999999999999
Q ss_pred ecCCCceEEEEEEEEecCCCC
Q 007434 570 SEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 570 s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
+. +++|++|+|+||....+.
T Consensus 865 ~~-~~gGa~f~~~LP~~~~~~ 884 (890)
T COG2205 865 NN-PGGGAIFVFTLPVEEDPP 884 (890)
T ss_pred Ec-CCCceEEEEEeecCCCCc
Confidence 98 899999999999986654
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=3.4e-42 Score=383.60 Aligned_cols=421 Identities=23% Similarity=0.332 Sum_probs=318.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhc
Q 007434 76 FNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRS 155 (604)
Q Consensus 76 ~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 155 (604)
|+.|.+....+.....++|+++++.++++...+ ..+++++.+..++++++.+.|+++++.+++
T Consensus 462 FF~~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l-----------------~~r~r~~a~~a~~re~~~~~L~els~~L~~ 524 (895)
T PRK10490 462 FFVAPRGTLAVSDVQYLLTFAVMLTVGLVIGNL-----------------TAGVRYQARVARYREQRTRHLYEMSKALAV 524 (895)
T ss_pred eeCCCceEEEEcCcccHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333445677777888888877776 666777777788999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccc
Q 007434 156 TLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (604)
Q Consensus 156 ~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~ 235 (604)
+.+.+++++.+.+.+.+.+++. +++|++++++......... ...+.+.....|++.++.+........
T Consensus 525 a~~~~~i~~~~~~~l~~~~~~~-~~l~l~~~~g~~~~~~~~~-------~~~~~~~~~~~w~~~~~~~~g~~~~tl---- 592 (895)
T PRK10490 525 GLSPEDIAATSEHFLASTFQAR-SQLLLPDDNGKLQPLTHDQ-------GMTPWDDAIARWSFDKGQPAGAGTDTL---- 592 (895)
T ss_pred CCCHHHHHHHHHHHHHHhhCCC-EEEEEEcCCCccccccccc-------cccchHHHHHHHHHhcCCccccCcCcC----
Confidence 9999999999999999999976 4577777655432111100 012334456677777766644322110
Q ss_pred cccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCC-ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007434 236 RPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDS-ARQWHVHELELVEVVADQVAVALSHAAILE 314 (604)
Q Consensus 236 ~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~-~~~~~~~e~~ll~~la~~~a~al~~a~l~~ 314 (604)
+ . ..+..+| +..++...|++.+.... ...|++++..+++.++.+++.++++..+.+
T Consensus 593 --------~-~-------------~~~~~lP-l~~~~~~~Gvl~l~~~~~~~~~~~~~~~ll~~la~~~a~aler~~l~~ 649 (895)
T PRK10490 593 --------P-G-------------VPYQILP-LKSAQKTYGLLAVEPGNLRQLMIPEQQRLLETFTLLIANALERLTLTA 649 (895)
T ss_pred --------C-C-------------CceEEEE-EEECCEEEEEEEEecCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1122334 55566778888776654 456889999999999999999999877654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHH
Q 007434 315 ESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE--LTPEQRLMVETILKSSNLL 392 (604)
Q Consensus 315 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l 392 (604)
+.++.+. ..+..+.++.|++.++||+||||++|.++++++.... ......+.++.+.+...++
T Consensus 650 ~~~~~~l---------------~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l 714 (895)
T PRK10490 650 SEEQARL---------------ASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNT 714 (895)
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHH
Confidence 4221110 1112245678999999999999999999999876432 2233446688899999999
Q ss_pred HHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHh
Q 007434 393 ATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAV 472 (604)
Q Consensus 393 ~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~ 472 (604)
..++++++++++.+.+...+...++++.+++++++..+......++ +.++++.+.+ .+.+|+..+.|++.||++||+
T Consensus 715 ~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~--i~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAi 791 (895)
T PRK10490 715 TRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHP--INLSLPEPLT-LIHVDGPLFERVLINLLENAV 791 (895)
T ss_pred HHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCCe-EEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999999888889999999999999998887666555 4455555544 477899999999999999999
Q ss_pred hcCCCC-cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchh
Q 007434 473 KFTKEG-NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLG 551 (604)
Q Consensus 473 k~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlG 551 (604)
||++++ .|.|++...++. +.|+|+|||+||+++..+++|+||++++.. ...+|+|+|
T Consensus 792 k~s~~g~~I~I~~~~~~~~--------------------v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLG 849 (895)
T PRK10490 792 KYAGAQAEIGIDAHVEGER--------------------LQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLG 849 (895)
T ss_pred HhCCCCCeEEEEEEEeCCE--------------------EEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHH
Confidence 999754 588887766553 899999999999999999999999987643 234699999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCC
Q 007434 552 LAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 552 L~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~ 589 (604)
|++||++++.|||+|+++|. +|+||+|+|.+|+..++
T Consensus 850 L~Ivk~ive~hGG~I~v~s~-~~~Gt~f~i~LPl~~~~ 886 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENR-PEGGACFRVTLPLETPP 886 (895)
T ss_pred HHHHHHHHHHcCCEEEEEEC-CCCeEEEEEEeECCCCC
Confidence 99999999999999999998 89999999999987554
No 3
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=9.6e-38 Score=342.74 Aligned_cols=386 Identities=18% Similarity=0.202 Sum_probs=281.8
Q ss_pred HHHHHHHHHHhhhHHH--HhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCC
Q 007434 126 AAELDREMGLIRTQEE--TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPV 203 (604)
Q Consensus 126 ~~~l~~~~~~~~~~~~--~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~ 203 (604)
..++++.+.......+ -...+.++++.+.+..+.+++++.+++.+.+.++++.+++|+.+.++..+........+..
T Consensus 285 r~~l~~~~~k~~~~~~~dyr~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~- 363 (679)
T TIGR02916 285 RARLRVFISKHFFRYKYDYREEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLA- 363 (679)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCc-
Confidence 4455555544322221 1233478999999999999999999999999999999999999888776655544333222
Q ss_pred cccccCCChhHHHHhhcCCeEEeCCCCcccccccc---ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEe
Q 007434 204 GYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPL---AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLML 280 (604)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~ 280 (604)
....+.+.+.+++...++.....++....+..... .........+.+++ | +..++...|++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-------------P-L~~~~~~~G~l~l 429 (679)
T TIGR02916 364 QAFEPSDSAFCQFLQESGWIINLEEARSEPDHYSGLVLPEWLREIPNAWLIV-------------P-LISGEELVGFVVL 429 (679)
T ss_pred ccCCCCCCHHHHHHHhCCCcccchhhcCCcccccccccchhhhcCCCceEEE-------------E-eccCCEEEEEEEE
Confidence 22455566677777666666554443322211100 00001111223333 4 4445556676666
Q ss_pred cCC-CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007434 281 PSD-SARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPM 359 (604)
Q Consensus 281 ~~~-~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL 359 (604)
... .++.|++++.++++.++.|++.++++.+..+++.+.+ +.++.+++.+.++||+|||+
T Consensus 430 ~~~~~~~~~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~~-------------------~~~~~~~~~a~i~HdLrn~l 490 (679)
T TIGR02916 430 ARPRTAGEFNWEVRDLLKTAGRQAASYLAQMEASEALAEAR-------------------QFEAFNRMSAFVVHDLKNLV 490 (679)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhccHH
Confidence 554 5668999999999999999999999887766533221 12455678899999999999
Q ss_pred HHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccC
Q 007434 360 HAIIALSSLLQETELTP-EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKK 438 (604)
Q Consensus 360 ~~i~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 438 (604)
+.+....+...+...++ ..++.++.+.+..++++++++++.+... ..+..++++.++++++.+..+. ....
T Consensus 491 ~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~--~~~~ 562 (679)
T TIGR02916 491 AQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRA--QGPR 562 (679)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhh--hcCC
Confidence 99988888776544444 4566788889999999999988765432 3555689999999999887653 2233
Q ss_pred cEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEe
Q 007434 439 LLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKD 517 (604)
Q Consensus 439 i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D 517 (604)
++++++.+ ..+.+|+..+.+++.||++||+||++ ++.|+|++...++. +.|+|+|
T Consensus 563 --~~l~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~--------------------~~i~V~D 618 (679)
T TIGR02916 563 --PEVSIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECGA--------------------ARIEIED 618 (679)
T ss_pred --ceEEeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCE--------------------EEEEEEE
Confidence 34444443 34678999999999999999999986 56799888776543 8999999
Q ss_pred cCCCCCcCc-hhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEE
Q 007434 518 SGSGISPQD-IPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 518 ~G~Gi~~~~-~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
||+|||++. .+++|+||++++ .+|+|+||++||++++.|||+|+++|. +|+||+|++++|
T Consensus 619 ~G~Gi~~~~i~~~lF~pf~~~~------~~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 619 SGCGMSPAFIRERLFKPFDTTK------GAGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred cCCCcChHHHHHhcCCCCCCCC------CCCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 999999999 999999999887 479999999999999999999999999 899999999997
No 4
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=5.8e-37 Score=343.59 Aligned_cols=417 Identities=16% Similarity=0.209 Sum_probs=293.2
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHH--HHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCC
Q 007434 126 AAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPV 203 (604)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~ 203 (604)
...+++..+.++++.+..+.+.+++..+....+.+ ..++.++..+.+.++++.+++++.+.++....+........ .
T Consensus 259 ~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 337 (828)
T PRK13837 259 VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTPD-P 337 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCCC-C
Confidence 34445555666777777788999999988776555 88999999999999999999999887776544332111110 0
Q ss_pred cccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC
Q 007434 204 GYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD 283 (604)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~ 283 (604)
... .........+..........+........ ......+....+++| ...++...|++.+...
T Consensus 338 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~g~l~~~~~ 400 (828)
T PRK13837 338 VWP-DRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLA--------------FKSGDRIVALLGLGRQ 400 (828)
T ss_pred Cch-HHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEE--------------eccCCceEEEEEeccc
Confidence 000 00011122222222222221111000000 001122233334444 4455666676666544
Q ss_pred -CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007434 284 -SARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAI 362 (604)
Q Consensus 284 -~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i 362 (604)
....+.+.++.+++.++.+++.++++.+..++.++.++++++ .++.+.++.|++.++||+||||+.|
T Consensus 401 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l~~------------~~rl~~l~~~~~~iaHeLrtPL~~I 468 (828)
T PRK13837 401 RYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRLEH------------ARRLEAVGTLASGIAHNFNNILGAI 468 (828)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 334566899999999999999999998887775554443322 1233577899999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEE
Q 007434 363 IALSSLLQET-ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLV 441 (604)
Q Consensus 363 ~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~ 441 (604)
.++++++.+. ...++..++++.+...++++..++++++++++... ...+++++.+++++++..+.... .+++.+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i~l 543 (828)
T PRK13837 469 LGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGVEL 543 (828)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCcEE
Confidence 9999987653 34557788999999999999999999999998544 34458999999999998887543 366777
Q ss_pred EEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCC
Q 007434 442 ALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGS 520 (604)
Q Consensus 442 ~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~ 520 (604)
.+..++.. ..+.+|+..+.|++.||++||+||++ +|.|.|++........ .........++.++.|+|+|||+
T Consensus 544 ~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~-----~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 544 DFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAP-----KVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred EEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccc-----cccccccCCCCCEEEEEEEECCC
Confidence 77765553 35778999999999999999999986 5678888776522100 00000111123458999999999
Q ss_pred CCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCC
Q 007434 521 GISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
||+++.++++|+||++++ .+|+|+||++||++++.|||+|+++|. +|+||+|+|+||......
T Consensus 618 GI~~e~~~~iFe~F~~~~------~~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~ 680 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTR------AGGTGLGLATVHGIVSAHAGYIDVQST-VGRGTRFDVYLPPSSKVP 680 (828)
T ss_pred CCCHHHHHHhhCCcccCC------CCCCcchHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEeCCCCCC
Confidence 999999999999999886 379999999999999999999999999 899999999999876543
No 5
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-39 Score=297.88 Aligned_cols=227 Identities=28% Similarity=0.504 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPE--QRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l 419 (604)
++++.|.+++||||||||+++.++++.|.+....+. ..+++..-.+..+||-+++++++.++|+.....+++.+.+++
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inf 302 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINF 302 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHh
Confidence 677899999999999999999999999998765444 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCcE-EEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEecccccccCCC
Q 007434 420 HAVFREVLNLIKPIASVKKLL-VALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRA 497 (604)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~~~~~~~~~~~ 497 (604)
...+..++..+....++.... +.-++ +..+.++..|+..+.||+.|+++||+||+|+ |+|++++...+.
T Consensus 303 t~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~-------- 373 (459)
T COG5002 303 TAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET-------- 373 (459)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc--------
Confidence 999999999988765544432 21122 4446688999999999999999999999984 569998877554
Q ss_pred CCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceE
Q 007434 498 PEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGC 577 (604)
Q Consensus 498 ~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt 577 (604)
++.++|+|.|.|||.+..+++|++||+.+...++..+|+|+||+|+|++|+.|||.||.+|. .|+||
T Consensus 374 ------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkgt 440 (459)
T COG5002 374 ------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKGT 440 (459)
T ss_pred ------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCce
Confidence 39999999999999999999999999999888888999999999999999999999999999 89999
Q ss_pred EEEEEEEecCCCC
Q 007434 578 TAIFIVKLGIPEH 590 (604)
Q Consensus 578 ~~~~~lp~~~~~~ 590 (604)
+|+|+||......
T Consensus 441 t~~ftLPy~~~~~ 453 (459)
T COG5002 441 TFSFTLPYSGEAG 453 (459)
T ss_pred EEEEEecccCccc
Confidence 9999999876543
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=3.3e-36 Score=337.88 Aligned_cols=231 Identities=32% Similarity=0.521 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH
Q 007434 340 AIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (604)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l 419 (604)
.++.+++|++.++||+||||++|.++++++.+...+++.+++++.+..++.++..++++++++++++.+...+...++++
T Consensus 279 a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~l 358 (779)
T PRK11091 279 ASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPIDF 358 (779)
T ss_pred HHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeeccCH
Confidence 34567899999999999999999999999988888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCC
Q 007434 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
.++++++...+...+..+++.+.+..+.+.|..+.+|+.++.|++.||++||+||+++|.|.|++....+.
T Consensus 359 ~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~--------- 429 (779)
T PRK11091 359 TDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD--------- 429 (779)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC---------
Confidence 99999999999998999999999998887776788899999999999999999999988898888776332
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc-ccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ-AIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~ 578 (604)
.+.|+|+|||+|||++.++++|+|||+++ ....+..+|+|+||++||++++.|||+|+++|. +|+||+
T Consensus 430 ----------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~ 498 (779)
T PRK11091 430 ----------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGKGSC 498 (779)
T ss_pred ----------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCCeEE
Confidence 38999999999999999999999999995 333344679999999999999999999999999 899999
Q ss_pred EEEEEEecCCCC
Q 007434 579 AIFIVKLGIPEH 590 (604)
Q Consensus 579 ~~~~lp~~~~~~ 590 (604)
|++++|++..+.
T Consensus 499 f~i~lP~~~~~~ 510 (779)
T PRK11091 499 FTLTIHAPAVAE 510 (779)
T ss_pred EEEEEecccccc
Confidence 999999976544
No 7
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=5e-35 Score=289.43 Aligned_cols=409 Identities=22% Similarity=0.307 Sum_probs=303.1
Q ss_pred HHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeec--cCCCCcccccCCC--hhHHHHhhcCCeEEeC
Q 007434 152 EIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR--QQNPVGYTVPIQL--PVINQVFSSNHAVKIS 227 (604)
Q Consensus 152 ~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~~~~i~ 227 (604)
++.++.+++++++.+++++++++|.||+.+|.++.++..-.++-... .++..|..+|.++ ...+..+..+.-..++
T Consensus 141 ~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~~G~VIAEak~e~LesyLGl~yPaSDIP~qAR~LY~~N~lRlIp 220 (750)
T COG4251 141 RLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAKREDLESYLGLRYPASDIPQQARALYIQNPLRLIP 220 (750)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcCCceEEEEeecCCCCccEEeccccccchhhhcccCCcccCCHHHHHHHhcCceeecc
Confidence 78889999999999999999999999999999987765544443322 2355677777743 4566677777777777
Q ss_pred CCCccc--ccc---ccccccCCC----ceeEEEeccccccc---cccCCcccccccceEEEEEEecCCCccccchhhHHH
Q 007434 228 PNCPVA--RLR---PLAGKYMPG----EVVAVRVPLLHLSN---FQINDWPELSTKRYALMVLMLPSDSARQWHVHELEL 295 (604)
Q Consensus 228 ~~~~~~--~~~---~~~~~~~~~----~~~~i~~pl~~~~~---~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~l 295 (604)
|....+ ..+ +..+....- .++...+.+-...+ -.++... +..++..+|++.++...++..+.+-+.-
T Consensus 221 D~~~~~vpv~PavNp~t~~p~DLs~svLRSvSp~H~eYLrNMGV~ASmSIS-ivv~g~LWGLIACHH~sPk~ip~~vR~a 299 (750)
T COG4251 221 DVSYTPVPVLPAVNPETNEPLDLSYSVLRSVSPIHLEYLRNMGVGASMSIS-IVVDGKLWGLIACHHQSPKVIPYEVRKA 299 (750)
T ss_pred cccCcccccccccCcccCCcccchHHHHhccChHHHHHHHhcCcceeeEEE-EEECCeeEEeeeeccCCCccCCHHHHHH
Confidence 744211 111 111110000 00000000000000 0001111 6678888999999999998888777766
Q ss_pred HHHHHHHHHHHHHH---HHHHHHH--------------------------------------------------------
Q 007434 296 VEVVADQVAVALSH---AAILEES-------------------------------------------------------- 316 (604)
Q Consensus 296 l~~la~~~a~al~~---a~l~~~~-------------------------------------------------------- 316 (604)
.+-++..++.-++. ++..+.+
T Consensus 300 cef~gq~~s~~i~~~e~~~~~d~r~~l~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~~~~vG~tP~ 379 (750)
T COG4251 300 CEFFGQVLSMEISALEQSEDADYRVQLTEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGRWHLVGETPP 379 (750)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCEEEEecCCCC
Confidence 66666655544432 2222111
Q ss_pred --------------------------------------------------------------------------------
Q 007434 317 -------------------------------------------------------------------------------- 316 (604)
Q Consensus 317 -------------------------------------------------------------------------------- 316 (604)
T Consensus 380 ~~~v~~Ll~wl~~~~~~~vf~TdsL~q~yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~ 459 (750)
T COG4251 380 RPAVQRLLQWLAEREEGDVFATDSLSQVYPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGP 459 (750)
T ss_pred hHHHHHHHHHHhcCCcccEEeeccccccCcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCC
Confidence
Q ss_pred ---------------------------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007434 317 ---------------------------------MRARDL----LMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPM 359 (604)
Q Consensus 317 ---------------------------------~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL 359 (604)
++++.. +-+...++.+.++++++.|++.++|.+.++||+++||
T Consensus 460 ~~~rL~PRkSFe~WkE~vRl~s~PWs~~ei~~A~~LR~aiv~ivl~~aeela~l~r~lersn~el~~f~yv~sHdlqePl 539 (750)
T COG4251 460 MGIRLTPRKSFELWKETVRLQSQPWSEVEIEAALELRKAIVGIVLRHAEELAQLRRELERSNAELRAFAYVASHDLQEPL 539 (750)
T ss_pred CCcccCCcccHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHH
Confidence 111111 1233445567778889999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhc
Q 007434 360 HAIIALSSLLQE---TELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASV 436 (604)
Q Consensus 360 ~~i~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 436 (604)
+.|+++++++.+ +..+++.++++..+.+.+.++.++|++++.|+++.....++ .+.|+.+++..++..+......
T Consensus 540 ~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l--~~td~~~vv~~vl~~l~~ri~d 617 (750)
T COG4251 540 RQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPL--QPTDVQKVVDKVLLELSQRIAD 617 (750)
T ss_pred HHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--CCcchHHHHHHHHHhccccccc
Confidence 999999999975 46788899999999999999999999999999986655444 4889999999999999998888
Q ss_pred cCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC--cEEEEEEEecccccccCCCCCCcccCCCCceEEEEE
Q 007434 437 KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG--NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQ 514 (604)
Q Consensus 437 ~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (604)
.++++++. + +|. +.+|+.++.|+++||+.||+||..++ .|.|+....+.. +.++
T Consensus 618 tgaei~i~--~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~--------------------~t~s 673 (750)
T COG4251 618 TGAEIRIA--P-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQEDE--------------------WTFS 673 (750)
T ss_pred ccceEEec--c-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeeccCCc--------------------eEEE
Confidence 88777653 4 664 67899999999999999999998644 477876666665 8999
Q ss_pred EEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCC
Q 007434 515 VKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 515 V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
|+|||.||++...+++|..|.+.... .++.|+|+||+|||+|++.|+|+|+++|+ +|+|.||+|++|...+..
T Consensus 674 V~dng~Gi~~a~~~riF~iFqRl~s~--~~y~gtG~GL~I~kkI~e~H~G~i~vEs~-~gEgsTF~f~lp~~~~e~ 746 (750)
T COG4251 674 VRDNGIGIDPAYFERIFVIFQRLHSR--DEYLGTGLGLAICKKIAERHQGRIWVEST-PGEGSTFYFTLPVGGEEP 746 (750)
T ss_pred ecCCCCCcCHHHHHHHHHHHHhcCch--hhhcCCCccHHHHHHHHHHhCceEEEeec-CCCceeEEEEeecCCcCc
Confidence 99999999999999999999887754 45789999999999999999999999999 899999999999876543
No 8
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=2e-35 Score=325.72 Aligned_cols=242 Identities=24% Similarity=0.368 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 007434 328 IALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLED 407 (604)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~ 407 (604)
+++++++++++++++++++|++.++||+||||++|.++++.+.+...+++.++.++.+..+++++.+++++++++++++.
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666777778888899999999999999999999999999988777888899999999999999999999999999999
Q ss_pred CCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEe
Q 007434 408 GSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVA 487 (604)
Q Consensus 408 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~ 487 (604)
+...++.+++++.+++++++..+...++.+++.+.+..+...+..+.+|+.++.||+.||++||+||++.|.|+|++...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999998887766666788999999999999999999999999888888764
Q ss_pred cccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEE
Q 007434 488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567 (604)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~ 567 (604)
... ..++.|+|+|+|+||+++.++++|+||++++.. .+.++|+||||+|||++++.|||+|+
T Consensus 594 ~~~-----------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~ 655 (894)
T PRK10618 594 ESS-----------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLT 655 (894)
T ss_pred cCC-----------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEE
Confidence 332 124899999999999999999999999987643 23357999999999999999999999
Q ss_pred EEecCCCceEEEEEEEEecCC
Q 007434 568 IESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 568 i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
++|. +|+||+|+|+||+...
T Consensus 656 v~S~-~g~GT~F~I~LPl~~~ 675 (894)
T PRK10618 656 IKSR-EGLGTRYSIHLKMLAA 675 (894)
T ss_pred EEEC-CCCcEEEEEEEEccCC
Confidence 9999 8999999999999644
No 9
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=1.2e-34 Score=296.10 Aligned_cols=235 Identities=24% Similarity=0.446 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 329 ALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELT-------PEQRLMVETILKSSNLLATLINDVLD 401 (604)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~l~~ 401 (604)
++++++++++++.+.+++|++.++||+||||++|.+.++.+.....+ +..+++++.+....+++..+++++++
T Consensus 136 ~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~ 215 (380)
T PRK09303 136 VLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLE 215 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667778889999999999999999999999999854322 33677889999999999999999999
Q ss_pred HhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-CcE
Q 007434 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNI 480 (604)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~i 480 (604)
+++.+.....++..++++.+++.+++..+......+++.+.++++.+.+ .+.+|+..+.|++.||++||+||+++ +.|
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I 294 (380)
T PRK09303 216 VGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTI 294 (380)
T ss_pred HHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 9999988888888899999999999999999888999999998877765 47789999999999999999999975 567
Q ss_pred EEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHH
Q 007434 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~ 560 (604)
+|.+....+. ++.|+|.|||+|||++..+++|+|||+++. ....+|+|+||++||++++
T Consensus 295 ~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 295 TLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred EEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHH
Confidence 7776543332 389999999999999999999999999875 2346799999999999999
Q ss_pred HcCCEEEEEecCCCceEEEEEEEEec
Q 007434 561 LMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 561 ~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
.|||+|+++|. +|+||+|+|++|..
T Consensus 354 ~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 354 VHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HcCCEEEEEec-CCCccEEEEEEecC
Confidence 99999999999 89999999999975
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.5e-34 Score=323.98 Aligned_cols=239 Identities=35% Similarity=0.539 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 007434 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS 409 (604)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~ 409 (604)
+++++++++++++.+..|++.++||+||||++|.++++++.....+++.+++++.+..+++++..++++++++++++.+.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555566666678888999999999999999999999998888888889999999999999999999999999999998
Q ss_pred cceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecc
Q 007434 410 LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKS 489 (604)
Q Consensus 410 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~ 489 (604)
..++..++++.+++++++..+...+..+++.+.+.++++.+..+.+|+.++.||+.||++||+||+++|.|.|++...++
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~~~ 592 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVDGD 592 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEeCC
Confidence 89999999999999999999998888999999998888777678899999999999999999999999988888876544
Q ss_pred cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE 569 (604)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~ 569 (604)
++.|+|+|+|+||+++.++++|+||++.+....+..+|+|+||++|+++++.|||+|+++
T Consensus 593 --------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~ 652 (924)
T PRK10841 593 --------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVD 652 (924)
T ss_pred --------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEE
Confidence 389999999999999999999999999776544556799999999999999999999999
Q ss_pred ecCCCceEEEEEEEEecCCC
Q 007434 570 SEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 570 s~~~g~Gt~~~~~lp~~~~~ 589 (604)
|. +|+||+|+|.||+....
T Consensus 653 S~-~g~Gt~F~i~LP~~~~~ 671 (924)
T PRK10841 653 SE-PGMGSQFTIRIPLYGAQ 671 (924)
T ss_pred Ec-CCCcEEEEEEEECCccc
Confidence 99 89999999999986443
No 11
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-31 Score=263.77 Aligned_cols=214 Identities=24% Similarity=0.387 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeec
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLL---QETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFN 418 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l---~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~ 418 (604)
..++++.++++||+++||.+|.++++.. .+....++..+.+..|..-++||..+..+|..|++..... ..++.
T Consensus 382 A~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~ 457 (603)
T COG4191 382 AALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVS 457 (603)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCcc
Confidence 4678999999999999999999988763 4567788889999999999999999999999999965433 45899
Q ss_pred HHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccC
Q 007434 419 LHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDS 495 (604)
Q Consensus 419 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~ 495 (604)
+.+.|+++...+....+..+..+....++. +..+.+++.+|+||+.||+.||+++.. +++|.|.+...++.
T Consensus 458 l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~----- 531 (603)
T COG4191 458 LREAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQ----- 531 (603)
T ss_pred HHHHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCe-----
Confidence 999999999999999999998888877554 457899999999999999999999964 56788888887775
Q ss_pred CCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCc
Q 007434 496 RAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGK 575 (604)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~ 575 (604)
+.|+|+|||+||+++.+.++|+||||+|+. ++|.||||+|++.|++.+||+|++.+. ++.
T Consensus 532 ---------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~~----~~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~ 591 (603)
T COG4191 532 ---------------VVLTVRDNGPGIAPEALPHLFEPFFTTKPV----GKGLGLGLAISQNIARDLGGSLEVANH-PEG 591 (603)
T ss_pred ---------------EEEEEccCCCCCCHHHHHhhcCCccccCcc----cCCcchhHHHHHHHHHHhCCeEEeecC-CCC
Confidence 999999999999999999999999999965 789999999999999999999999988 799
Q ss_pred eEEEEEEEEe
Q 007434 576 GCTAIFIVKL 585 (604)
Q Consensus 576 Gt~~~~~lp~ 585 (604)
|+.|++.||.
T Consensus 592 Ga~F~i~L~~ 601 (603)
T COG4191 592 GASFTIELRR 601 (603)
T ss_pred ceEEEEEeec
Confidence 9999999984
No 12
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=263.31 Aligned_cols=436 Identities=17% Similarity=0.144 Sum_probs=335.0
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHh--cC-CCCchHHHHHHHHHHHHhhhHHHhhHHhcccc-hhHHHHHHHHHHHHHHHHH
Q 007434 23 ISDFFIALAYFSIPLELIYFVKK--SA-VFPYRWVLVQFGAFIVLCGATHLINLWTFNMH-SRTVAIVMTTAKVLTAVVS 98 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~--~~-~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~-~~~~~~~~~~~k~~ta~vs 98 (604)
..+..-++|++..++..+|+.++ || .++ +-.+..+.++ .|++.+|+.|+++.+| .+++.+++.+..+|...+|
T Consensus 103 ~ta~~c~iSti~~G~l~g~~~~~~~r~~R~~-~p~~~~~v~~--~~E~lqM~iIL~~a~~~~~av~lVs~i~iPMil~Ns 179 (557)
T COG3275 103 MTALSCAISTILEGLLGGLVHLYLIRRGRWD-SPIVAALVGI--VAEMLQMLIILVIARPFADAVDLVSNIAIPMILGNS 179 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccCCC-CchHHHHHHH--HHHHHHHHHHhhccCcHHHHHHHHhhccchhHhhcc
Confidence 34566678889999999988643 22 233 4455556666 8999999999998888 7899999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCe
Q 007434 99 CATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEE 178 (604)
Q Consensus 99 ~~tai~l~~llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~ 178 (604)
+++++++..+ .....+.|.-...+....+...++....+++.++.+. ...+++.+.+.+++++
T Consensus 180 vgaa~fm~i~----------------~~~~~~~E~~~a~~a~~aL~iA~~tlplfr~gfn~es-~~~va~Ii~~~~~~~A 242 (557)
T COG3275 180 VGAALFMRIL----------------LDRRAKFEKYAAVQAKLALKIANKTLPLFRQGFNEES-LMKVAEIIYEELGAGA 242 (557)
T ss_pred hhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcChhh-HHHHHHHHHHHhCCCe
Confidence 9999999887 2333333444455556667777788888999999998 7888999999999999
Q ss_pred eEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEecccccc
Q 007434 179 CALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLS 258 (604)
Q Consensus 179 ~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~ 258 (604)
++| ++++-.+++.+....++-...++..+....++..++.+..+.... ..+. .......+++..|
T Consensus 243 Vai-----Td~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~e~-~~cs----h~~c~l~s~lViP----- 307 (557)
T COG3275 243 VAI-----TDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGNEV-YECS----HPTCKLGSALVIP----- 307 (557)
T ss_pred EEe-----cCHHHHHHhhcccccccCCCCeeccHHHHHHHhhCCEEEEccchh-hccC----CCCCCcCCceEee-----
Confidence 998 555555555555555666677888899999999999888776543 1111 1222244444455
Q ss_pred ccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 259 NFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAE 338 (604)
Q Consensus 259 ~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 338 (604)
+..++.+.|.+..+...++.++.-+.++.+.++..++..++..+.+++.+.+.+
T Consensus 308 ---------L~~~g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~ge~e~q~~ll~~----------------- 361 (557)
T COG3275 308 ---------LRGKGRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEAGEAERQRELLKQ----------------- 361 (557)
T ss_pred ---------cccCCceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------
Confidence 777899999999999999999999999999999999988886665544222221
Q ss_pred HHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccee-eee
Q 007434 339 TAIRARNDFLAVMN-HEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQ-IGT 416 (604)
Q Consensus 339 ~~~~~~~~l~~~i~-Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~-~~~ 416 (604)
++.+.+.+.++ |.|.|.||+|++. ++.+.+..++++-++..|.|.. ++.+ .+.
T Consensus 362 ---AEik~LqaQvnPHFLFNaLNTIsa~-------------------IR~npdkAreLil~LS~yfR~N---L~~~~~~~ 416 (557)
T COG3275 362 ---AEIKALQAQVNPHFLFNALNTISAV-------------------IRRNPDKARELILYLSTYFRYN---LENNTQEI 416 (557)
T ss_pred ---HHHHHHHhccChHHHHHHHHHHHHH-------------------hcCChHHHHHHHHHHHHHHHHH---hcCCcceE
Confidence 56778888888 9999999999887 6777788899999999999853 3333 457
Q ss_pred ecHHHHHHHHHHHhhhhhh--ccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEEEecc
Q 007434 417 FNLHAVFREVLNLIKPIAS--VKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-----KEGNISITGFVAKS 489 (604)
Q Consensus 417 ~~l~~~l~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~-----~~g~i~i~~~~~~~ 489 (604)
++|.+.++++..+++-.-. ..+.++.+++++.+.. ......++|.|++||+||+ +.|.|+|++...+.
T Consensus 417 v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-----~~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~ 491 (557)
T COG3275 417 VTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-----VQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDA 491 (557)
T ss_pred eehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-----ccCchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCC
Confidence 8999999999998862111 2355566666554421 1223567899999999996 35779999988877
Q ss_pred cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCC---EE
Q 007434 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEG---HI 566 (604)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG---~i 566 (604)
. +.+.|+|||.|++++. ..|+|+||++++++++.+.| -+
T Consensus 492 ~--------------------l~i~VeDng~li~p~~------------------~~g~giGL~nv~~RLk~lyG~~~gl 533 (557)
T COG3275 492 D--------------------LRIEVEDNGGLIQPDE------------------EDGTGIGLANVHKRLKLLYGDDEGL 533 (557)
T ss_pred e--------------------EEEEEecCCCCcCCCC------------------CCCCChHHHHHHHHHHHhcCccccc
Confidence 5 9999999999999852 57899999999999999999 58
Q ss_pred EEEecCCCceEEEEEEEEecCC
Q 007434 567 WIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 567 ~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
.+++. +..||++.|.+|....
T Consensus 534 ~i~~~-~q~gTri~f~lp~~~~ 554 (557)
T COG3275 534 HIESL-EQAGTRIIFRLPLQRT 554 (557)
T ss_pred eEEec-cCCCcEEEEEecCccc
Confidence 99998 7789999999998754
No 13
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=2.4e-31 Score=305.50 Aligned_cols=248 Identities=40% Similarity=0.619 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007434 327 NIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLE 406 (604)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~ 406 (604)
+.++..++++.++.++.+.+|++.++||+||||++|.++++.+.....+++.+++++.+.++++++..++++++++++++
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 355 (919)
T PRK11107 276 NVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLE 355 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566666677889999999999999999999999988877888899999999999999999999999999999
Q ss_pred CCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEE
Q 007434 407 DGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFV 486 (604)
Q Consensus 407 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~ 486 (604)
.+...++..++++.+++++++..+...+..+++.+.+++++..+..+.+|+..+.|++.||++||+||+++|.|.|++..
T Consensus 356 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~ 435 (919)
T PRK11107 356 AGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVEL 435 (919)
T ss_pred cCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEE
Confidence 99998999999999999999999999999999999999888777678889999999999999999999998888777765
Q ss_pred ecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEE
Q 007434 487 AKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHI 566 (604)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i 566 (604)
..... +..++.|+|+|+|+||+++.++++|+||++.+....++.+|+|+||++||++++.|||+|
T Consensus 436 ~~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i 500 (919)
T PRK11107 436 RALSN---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDI 500 (919)
T ss_pred EecCC---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEE
Confidence 43321 122489999999999999999999999998876655667899999999999999999999
Q ss_pred EEEecCCCceEEEEEEEEecCCCC
Q 007434 567 WIESEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 567 ~i~s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
+++|. +|+||+|+|++|+...+.
T Consensus 501 ~v~s~-~~~Gt~f~i~lp~~~~~~ 523 (919)
T PRK11107 501 SFHSQ-PNRGSTFWFHLPLDLNPN 523 (919)
T ss_pred EEEec-CCCCEEEEEEEEeccCCc
Confidence 99999 899999999999976543
No 14
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.2e-32 Score=317.67 Aligned_cols=238 Identities=38% Similarity=0.623 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 007434 331 DSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSL 410 (604)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~ 410 (604)
.+++.+.+++++.+..|++.++||+||||+.|.++++++.+...+++.+++++.+..+++++..++++++++++++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455667777888999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccc
Q 007434 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSE 490 (604)
Q Consensus 411 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~ 490 (604)
.++..++++.++++++...+...+..+++.+.+.++++.|..+.+|+..+.||+.||++||+||++.|.|+|++...++.
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~ 610 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS 610 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC
Confidence 99999999999999999999999999999999999877777788999999999999999999999999898888765543
Q ss_pred ccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEe
Q 007434 491 SLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES 570 (604)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s 570 (604)
.+.|+|+|+|+|||++.++++|+||++.+. .+..+|+|+||+|||++++.|||+|.++|
T Consensus 611 -------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GLGL~i~~~l~~~~gG~i~~~s 669 (968)
T TIGR02956 611 -------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADG--RRRSGGTGLGLAISQRLVEAMDGELGVES 669 (968)
T ss_pred -------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCC--CCCCCCccHHHHHHHHHHHHcCCEEEEEe
Confidence 188999999999999999999999999883 24457999999999999999999999999
Q ss_pred cCCCceEEEEEEEEecCCCC
Q 007434 571 EGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 571 ~~~g~Gt~~~~~lp~~~~~~ 590 (604)
. +|+||+|+|++|+...+.
T Consensus 670 ~-~~~Gt~f~~~lp~~~~~~ 688 (968)
T TIGR02956 670 E-LGVGSCFWFTLPLTRGKP 688 (968)
T ss_pred c-CCCcEEEEEEEEcCCCCc
Confidence 9 899999999999876543
No 15
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=9.9e-33 Score=316.81 Aligned_cols=241 Identities=32% Similarity=0.482 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 323 LMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDL 402 (604)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (604)
+.++..++.+++++.++.++.+..+++.++||+||||++|.++++++.+...+++.+++++.+...+.++..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666777777888999999999999999999999999988888899999999999999999999999999
Q ss_pred hhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEE
Q 007434 403 SRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISI 482 (604)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i 482 (604)
++++.+...+..+++++.++++++...+......+++.+.+.+++..+..+.+|+.++.|++.||++||+||+++|.|+|
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999988899999998888887777888999999999999999999999899999
Q ss_pred EEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHc
Q 007434 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLM 562 (604)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~ 562 (604)
++...++. +.|+|+|||+||+++.++++|+||++++.. .+|+|+||++|+++++.|
T Consensus 537 ~~~~~~~~--------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 537 RVKRHEQQ--------------------LCFTVEDTGCGIDIQQQQQIFTPFYQADTH----SQGTGLGLTIASSLAKMM 592 (921)
T ss_pred EEEEcCCE--------------------EEEEEEEcCCCCCHHHHHHHhcCcccCCCC----CCCCchHHHHHHHHHHHc
Confidence 88766543 999999999999999999999999998743 579999999999999999
Q ss_pred CCEEEEEecCCCceEEEEEEEEecCC
Q 007434 563 EGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 563 gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
||+|+++|. +|+||+|+|.+|+...
T Consensus 593 gG~i~i~s~-~~~Gt~f~i~lp~~~~ 617 (921)
T PRK15347 593 GGELTLFST-PGVGSCFSLVLPLNEY 617 (921)
T ss_pred CCEEEEEec-CCCceEEEEEEECCCC
Confidence 999999999 8999999999998653
No 16
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=3e-32 Score=312.07 Aligned_cols=246 Identities=31% Similarity=0.494 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 319 ARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLIND 398 (604)
Q Consensus 319 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 398 (604)
..+++.+...++++++.+.++..+.+..|++.++||+||||+.|.++++++.+...+++.+++++.+...++++..++++
T Consensus 419 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 498 (914)
T PRK11466 419 RTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILND 498 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666777777788889999999999999999999999999998888888899999999999999999999
Q ss_pred HHHHhhhhCCC--cceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC
Q 007434 399 VLDLSRLEDGS--LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK 476 (604)
Q Consensus 399 l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~ 476 (604)
++++++.+.+. ..+..+++++.+++++++..+......+++.+.+++++..|..+.+|+..+.|++.||++||+||++
T Consensus 499 ll~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~ 578 (914)
T PRK11466 499 ILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTD 578 (914)
T ss_pred HHHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCC
Confidence 99999988763 4566678999999999999999999999999999988777777889999999999999999999999
Q ss_pred CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHH
Q 007434 477 EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICK 556 (604)
Q Consensus 477 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~ 556 (604)
+|.|.|++...+.. +.|.|+|||+||+++..+++|+||++.+. ..+|+|+||++||
T Consensus 579 ~g~I~i~~~~~~~~--------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~i~~ 634 (914)
T PRK11466 579 EGSIVLRSRTDGEQ--------------------WLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLTISS 634 (914)
T ss_pred CCeEEEEEEEcCCE--------------------EEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHHHHH
Confidence 99998888765443 89999999999999999999999998753 3579999999999
Q ss_pred HHHHHcCCEEEEEecCCCceEEEEEEEEecCCC
Q 007434 557 RFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 557 ~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~ 589 (604)
++++.|||+|+++|. +|+||+|++.+|+....
T Consensus 635 ~l~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~ 666 (914)
T PRK11466 635 RLAQAMGGELSATST-PEVGSCFCLRLPLRVAT 666 (914)
T ss_pred HHHHHcCCEEEEEec-CCCCeEEEEEEEccccc
Confidence 999999999999999 89999999999987654
No 17
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=6.1e-31 Score=274.79 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
.+.+|++.++||+||||++|.++++++.+.. .++...+.++.+.+.++++..++++++++++.+.+........+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 3457999999999999999999999987654 345567789999999999999999999999987766555566788888
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEecccccccCCCCCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEF 500 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~~~~~~~~~~~~~~ 500 (604)
+++.+...+.... .+++.+.+.+++.. .+.+|+..+.|++.||++||+||+++ +.|.|++...++.
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~---------- 349 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQG---------- 349 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCE----------
Confidence 8887777665544 56777777776554 46789999999999999999999975 4588877665443
Q ss_pred cccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEE
Q 007434 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (604)
Q Consensus 501 ~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~ 580 (604)
+.|+|+|||+|||++.++++|+|||+++....++.+|+|+||++||++++.|||+|+++|. +|+||+|+
T Consensus 350 ----------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f~ 418 (430)
T PRK11006 350 ----------AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRFS 418 (430)
T ss_pred ----------EEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEEE
Confidence 8999999999999999999999999987655555679999999999999999999999999 89999999
Q ss_pred EEEEecC
Q 007434 581 FIVKLGI 587 (604)
Q Consensus 581 ~~lp~~~ 587 (604)
|++|...
T Consensus 419 i~lP~~~ 425 (430)
T PRK11006 419 FVLPERL 425 (430)
T ss_pred EEechHh
Confidence 9999754
No 18
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-31 Score=242.77 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
++.+.+.++++||+||||..|.|.+++|.....++..+++.+.|.+.++|++.+++++.-++.- .+....+++++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchHHH
Confidence 4567899999999999999999999999998888889999999999999999999999766642 234555899999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC---C--CcEEEEEEEecccccccCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK---E--GNISITGFVAKSESLRDSR 496 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~---~--g~i~i~~~~~~~~~~~~~~ 496 (604)
+++.+....+.-. ..++.+.-+.++.+|. +.+|+++|.|+|.|++.||+.+.. . |.|.++.+..-.-...+.+
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r 283 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTR 283 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCce
Confidence 9999998887543 3677888888999987 667999999999999999999864 2 6677766322211100000
Q ss_pred CCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCce
Q 007434 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (604)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~G 576 (604)
..-.+.++|.|||+|+|++..+++|.||.+++ .+|+||||+++++++..|||.|+++|. || .
T Consensus 284 ----------~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r------~~GsGLGLala~~li~qH~G~Ie~~S~-Pg-~ 345 (363)
T COG3852 284 ----------YRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR------EGGTGLGLALAQNLIDQHGGKIEFDSW-PG-R 345 (363)
T ss_pred ----------eEeeeeeEEecCCCCCChHHhhhccccccccC------CCCccccHHHHHHHHHhcCCEEEEecc-CC-c
Confidence 11126788999999999999999999999998 689999999999999999999999999 65 7
Q ss_pred EEEEEEEEecC
Q 007434 577 CTAIFIVKLGI 587 (604)
Q Consensus 577 t~~~~~lp~~~ 587 (604)
|+|++.+|...
T Consensus 346 T~FrvllP~~~ 356 (363)
T COG3852 346 TVFRVLLPIRK 356 (363)
T ss_pred eEEEEEeeccc
Confidence 99999999877
No 19
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=1.1e-30 Score=272.52 Aligned_cols=236 Identities=20% Similarity=0.329 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 323 LMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDL 402 (604)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (604)
+.+....+++..+++++..+.+++|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.+
T Consensus 191 l~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~ 265 (433)
T PRK10604 191 LERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTY 265 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444555566666777777778899999999999999999999888876332 2222 23778889999999999999
Q ss_pred hhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEE
Q 007434 403 SRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISI 482 (604)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i 482 (604)
++.+........+++++.+++++++..++.....+++.+.+ +.. +..+.+|+..+.+++.||++||+||++ +.|.|
T Consensus 266 ~rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I 341 (433)
T PRK10604 266 ARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRV 341 (433)
T ss_pred HhccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99988888888889999999999999888766666655544 333 224567999999999999999999985 67888
Q ss_pred EEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHc
Q 007434 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLM 562 (604)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~ 562 (604)
++...++. +.|+|+|||+||+++.++++|+||++.+....++.+|.|+||++||++++.|
T Consensus 342 ~~~~~~~~--------------------~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 342 SLLLDGNQ--------------------ACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAM 401 (433)
T ss_pred EEEEECCE--------------------EEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHC
Confidence 88776654 8999999999999999999999999987655555678999999999999999
Q ss_pred CCEEEEEecCCCceEEEEEEEEecCC
Q 007434 563 EGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 563 gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
||++++++. +++||+|++.+|...+
T Consensus 402 gG~i~v~s~-~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 402 GGSVNCDES-ELGGARFSFSWPVWHN 426 (433)
T ss_pred CCEEEEEec-CCCeeEEEEEEeCCCC
Confidence 999999999 8999999999998753
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=99.98 E-value=2e-28 Score=258.15 Aligned_cols=215 Identities=27% Similarity=0.451 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~ 420 (604)
...+++.+.++||++|||++|.++++++.+.. ..++.++.++.+.+..+++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 45678999999999999999999999887643 345667788899999999999999999998843 3455689999
Q ss_pred HHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCC
Q 007434 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 421 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
++++++...+...++.+++.++++.+...+ .+..|+..+.+++.||++||+||++ ++.|.|++...++.
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~--------- 380 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAG--------- 380 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCe---------
Confidence 999999999999888999999998876554 3567999999999999999999976 56688888776554
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~ 579 (604)
+.|+|+|||+|||++..+++|++|++++ .+|+|+||++||++++.|||+++++|. +|+||+|
T Consensus 381 -----------~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f 442 (457)
T PRK10364 381 -----------VKISVTDSGKGIAADQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATF 442 (457)
T ss_pred -----------EEEEEEECCCCCCHHHHHHHhCccccCC------CCCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEE
Confidence 8999999999999999999999999876 468999999999999999999999999 8999999
Q ss_pred EEEEEecCC
Q 007434 580 IFIVKLGIP 588 (604)
Q Consensus 580 ~~~lp~~~~ 588 (604)
++++|+...
T Consensus 443 ~i~lP~~~~ 451 (457)
T PRK10364 443 TLWLPVNIT 451 (457)
T ss_pred EEEecCCCc
Confidence 999998643
No 21
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=5.2e-30 Score=274.08 Aligned_cols=216 Identities=22% Similarity=0.300 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
+.+.+++..++|++||||+.|.++++++.....+.......+.+......+.+.+..+.++.. ........++|+..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHH
Confidence 455677888889999999999999999876433322233333444444555555555555543 22234456899999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC-----cEEEEEEEecccccccCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-----NISITGFVAKSESLRDSR 496 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g-----~i~i~~~~~~~~~~~~~~ 496 (604)
++.+++..+...+..+++.+.+..+...+ .+.+|+.++.||+.||++||+||++.+ .|.|.....++
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~------- 422 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD------- 422 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC-------
Confidence 99999999988888899999988776665 467899999999999999999998544 25555444333
Q ss_pred CCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCce
Q 007434 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (604)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~G 576 (604)
.+.|+|+|||+|||++..+++|+||++++.. ..+|+||||++||.+++.|||+|+++|. +|+|
T Consensus 423 -------------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G 485 (494)
T TIGR02938 423 -------------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---SRKHIGMGLSVAQEIVADHGGIIDLDDD-YSEG 485 (494)
T ss_pred -------------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---CCCCCcccHHHHHHHHHHcCCEEEEEEC-CCCC
Confidence 3899999999999999999999999999853 2579999999999999999999999999 8999
Q ss_pred EEEEEEEEe
Q 007434 577 CTAIFIVKL 585 (604)
Q Consensus 577 t~~~~~lp~ 585 (604)
|+|+|+||+
T Consensus 486 ~~f~i~lp~ 494 (494)
T TIGR02938 486 CRIIVEFRV 494 (494)
T ss_pred EEEEEEecC
Confidence 999999995
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=1.4e-29 Score=266.04 Aligned_cols=237 Identities=17% Similarity=0.267 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 322 LLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLD 401 (604)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~ 401 (604)
++......+++..++.+++.+..+++++.++||+||||+.|.+.++.+....... ..+....+.+...++.+++++++.
T Consensus 244 El~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~-~~~~~~~~~~~i~ri~~~i~~ll~ 322 (485)
T PRK10815 244 ELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS-VEQAEPIMLEQISRISQQIGYYLH 322 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555666788999999999999999999999887654221 223344567788899999999999
Q ss_pred HhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEE
Q 007434 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNIS 481 (604)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~ 481 (604)
.++...+......+.+++..++++++..+......+++.+.++++++. .+.+|+..+.+++.||++||+||+++ .+.
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~ 399 (485)
T PRK10815 323 RASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVE 399 (485)
T ss_pred HHHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEE
Confidence 998888777777888999999999999999888889988888876543 46679999999999999999999964 467
Q ss_pred EEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHH
Q 007434 482 ITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL 561 (604)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~ 561 (604)
|++...++. +.|+|+|+|+||+++.++++|+||++.+.. .+|+|+||++|+++++.
T Consensus 400 I~~~~~~~~--------------------v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv~~ 455 (485)
T PRK10815 400 ISARQTDEH--------------------LHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLSVAREITEQ 455 (485)
T ss_pred EEEEEeCCE--------------------EEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHHHH
Confidence 776655443 899999999999999999999999987642 46899999999999999
Q ss_pred cCCEEEEEecCCCceEEEEEEEEecC
Q 007434 562 MEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 562 ~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
|||+|.++|. +++||+|++.+|...
T Consensus 456 ~gG~i~v~s~-~~~Gt~f~i~lp~~~ 480 (485)
T PRK10815 456 YEGKISAGDS-PLGGARMEVIFGRQH 480 (485)
T ss_pred cCCEEEEEEC-CCCEEEEEEEEcCCC
Confidence 9999999999 889999999999753
No 23
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.97 E-value=8.4e-30 Score=299.34 Aligned_cols=239 Identities=31% Similarity=0.494 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcc
Q 007434 333 ARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTP-EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQ 411 (604)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~ 411 (604)
+++++.++++.+++|++.++||+||||+.|.++++++.....++ +..+.++.+....+++..++++++++++.+.+...
T Consensus 701 ~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~ 780 (1197)
T PRK09959 701 ERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQ 780 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 33444455567789999999999999999999999987654444 44567888999999999999999999999998888
Q ss_pred eeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccc
Q 007434 412 LQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSES 491 (604)
Q Consensus 412 ~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~ 491 (604)
+...++++.+++++++..+......+++.+.+..+...+..+.+|+..+.||+.||++||+||+++|.+.+.+......
T Consensus 781 ~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~- 859 (1197)
T PRK09959 781 LQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHID- 859 (1197)
T ss_pred eeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeeec-
Confidence 8889999999999999999988888888887765433334577899999999999999999999988777665432211
Q ss_pred cccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 492 LRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
.+...+.|+|+|||+||+++.++++|+||++++.. +..+|+|+||++||++++.|||+|+++|.
T Consensus 860 --------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL~i~~~iv~~~gG~i~v~s~ 923 (1197)
T PRK09959 860 --------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGLMICKELIKNMQGDLSLESH 923 (1197)
T ss_pred --------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchHHHHHHHHHHcCCEEEEEeC
Confidence 01224889999999999999999999999998643 33569999999999999999999999999
Q ss_pred CCCceEEEEEEEEecCCC
Q 007434 572 GLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 572 ~~g~Gt~~~~~lp~~~~~ 589 (604)
+|+||+|+++||+....
T Consensus 924 -~~~Gt~f~i~lP~~~~~ 940 (1197)
T PRK09959 924 -PGIGTTFTITIPVEISQ 940 (1197)
T ss_pred -CCCcEEEEEEEEccccc
Confidence 89999999999986543
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=1.9e-28 Score=259.74 Aligned_cols=245 Identities=25% Similarity=0.366 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (604)
+++.+....+++...++++..+.+.++.+.++||+++||+.+.+.++.+.+.... ...+.+..+...++++..+++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666667777777777788999999999999999999999988764322 223456778888999999999999
Q ss_pred HHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-Cc
Q 007434 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GN 479 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~ 479 (604)
.+++.+.+...+...++++.++++.++..++.....+++.+++++++.. .+.+|+..+.|++.||+.||++|+++ |.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999888888888889999999999999998888888888888776553 35579999999999999999999874 56
Q ss_pred EEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHH
Q 007434 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv 559 (604)
|.|.+...++. +.|+|.|||+|||++.++++|+||++++....+..+|+|+||++|++++
T Consensus 374 I~i~~~~~~~~--------------------~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 374 LHISAEQRDKT--------------------LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred EEEEEEEcCCE--------------------EEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHH
Confidence 88888776553 8999999999999999999999999987654445678999999999999
Q ss_pred HHcCCEEEEEecCCCceEEEEEEEEecCCC
Q 007434 560 NLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 560 ~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~ 589 (604)
+.|||++++++. +++||+|++.+|+..++
T Consensus 434 ~~~~G~l~~~s~-~~~G~~~~i~lP~~~~~ 462 (466)
T PRK10549 434 EAHNGRIIAAHS-PFGGVSITVELPLERDL 462 (466)
T ss_pred HHcCCEEEEEEC-CCCeEEEEEEccCCCCC
Confidence 999999999999 89999999999987543
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=2.2e-28 Score=267.00 Aligned_cols=241 Identities=18% Similarity=0.243 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (604)
+++.+....++.+..++++..+.+..+++.++||++||++.+.+.++.+......++..++++.+.+.++++..+++++.
T Consensus 462 DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~ 541 (703)
T TIGR03785 462 DEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMS 541 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777777788888889999999999999999999999998777777888889999999999999999999
Q ss_pred HHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-Cc
Q 007434 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GN 479 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~ 479 (604)
.+++.+........+++++.+++++++..++.....+++.+.+ +.+. ..+.+|+..+.+++.||++||+||+++ +.
T Consensus 542 ~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i--~~~~-~~i~~d~~~L~~il~NLI~NAik~s~~~~~ 618 (703)
T TIGR03785 542 EATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNI--PETP-LVMRGSPELIAQMLDKLVDNAREFSPEDGL 618 (703)
T ss_pred HHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEe--cCCC-eEEEECHHHHHHHHHHHHHHHHHHCCCCCe
Confidence 9999887766777789999999999999988777766655554 3332 357789999999999999999999874 45
Q ss_pred EEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHH
Q 007434 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv 559 (604)
|.|++...++. +.|+|+|||+||+++..+++|+||++++.......+|+|+||++||+++
T Consensus 619 I~I~~~~~~~~--------------------v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv 678 (703)
T TIGR03785 619 IEVGLSQNKSH--------------------ALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIA 678 (703)
T ss_pred EEEEEEEcCCE--------------------EEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHH
Confidence 88877665543 8999999999999999999999999887544344458999999999999
Q ss_pred HHcCCEEEEEecCCCceEEEEEEEE
Q 007434 560 NLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 560 ~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
+.|||+|.+++.+.|+|++|+++||
T Consensus 679 ~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 679 DFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999983348999999997
No 26
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-27 Score=234.76 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeee
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQET---EL---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIG 415 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~---~~---~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~ 415 (604)
.+-+..+..++||+||||+-|...++.+... .. .+..++..+.|.+++..+.+|++++..|+|+-. +..+
T Consensus 484 ~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e 559 (712)
T COG5000 484 AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLE 559 (712)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCC
Confidence 5566788889999999999999998888642 22 234578889999999999999999999999754 5556
Q ss_pred eecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC--------CCcEEEEEEEe
Q 007434 416 TFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK--------EGNISITGFVA 487 (604)
Q Consensus 416 ~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~--------~g~i~i~~~~~ 487 (604)
..||+++++++....+- ....+.+..+...+ |....+|+.++.|+|.|++.||.++.. .+.|+++....
T Consensus 560 ~~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~ 636 (712)
T COG5000 560 KSDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDA 636 (712)
T ss_pred cchHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecC
Confidence 99999999999988873 34566777777666 666777999999999999999999852 12244444333
Q ss_pred cccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEE
Q 007434 488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567 (604)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~ 567 (604)
++ .+.+.|.|||.|+|.+.+.++|+||.|++ .+|+|+||+|+|+|++.|||+++
T Consensus 637 ~g--------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~le 690 (712)
T COG5000 637 DG--------------------RIVVDVIDNGKGFPRENRHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLE 690 (712)
T ss_pred CC--------------------eEEEEEecCCCCCChHHhhhhccCceecc------cccccccHHHHHHHHHhcCCeEE
Confidence 33 39999999999999999999999999998 68999999999999999999999
Q ss_pred EEecCCCceEEEEEEEEe
Q 007434 568 IESEGLGKGCTAIFIVKL 585 (604)
Q Consensus 568 i~s~~~g~Gt~~~~~lp~ 585 (604)
+.+.+.-.|..+++.+|.
T Consensus 691 L~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 691 LHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ecCCCCCCCcEEEEEccc
Confidence 999843459999999997
No 27
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.97 E-value=1.5e-25 Score=242.12 Aligned_cols=354 Identities=14% Similarity=0.157 Sum_probs=246.2
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCccc
Q 007434 127 AELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYT 206 (604)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~ 206 (604)
.+.+++...+.++.+.+..|++.++.+..+.+..+.++.+++.+.++++++.+.+.+.+..............+
T Consensus 203 ~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------ 276 (569)
T PRK10600 203 QRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSD------ 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCc------
Confidence 33444555677778888999999999999999999999999999999999999988766444321111111000
Q ss_pred ccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc
Q 007434 207 VPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR 286 (604)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~ 286 (604)
.......+.++... . .+ ...+.....+| +..+....|++......+.
T Consensus 277 ~~~~~~~~~~~~~~-------------~--------~~-----------~~~~~~~~~~~-l~~~~~~~G~~~~~~~~~~ 323 (569)
T PRK10600 277 MTCDDKGCQLCPRG-------------V--------LP-----------VGDRGTTLKWR-LSDKHGQYGILLATLPQGR 323 (569)
T ss_pred cCcccccccccccc-------------C--------CC-----------cCCCCceEEEE-eecCCcceEEEEEEcCCCC
Confidence 00000000000000 0 00 00001122334 5566777787777777677
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007434 287 QWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALS 366 (604)
Q Consensus 287 ~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~ 366 (604)
.+++++..+++.++.+++.+++..+..++.++ ....+++..++..++|.+.++|..+...+
T Consensus 324 ~l~~~~~~ll~~l~~~l~~~l~~~~~~~~~~~-------------------~~~~~er~~iarelhd~i~~~L~~l~~~~ 384 (569)
T PRK10600 324 HLSHDQQQLVDTLVEQLTATLALERQQERQQQ-------------------LIVMEERATIARELHDSIAQSLSCMKMQV 384 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 89999999999999999988876543222110 01113445577788888888888887766
Q ss_pred HHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEE
Q 007434 367 SLLQE--TELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALN 444 (604)
Q Consensus 367 ~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~ 444 (604)
+.+.. ...+++.++.++.+....+++...+++++...+. ...+.++.+.+..++..+.... ++.+.++
T Consensus 385 ~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~i~~~ 454 (569)
T PRK10600 385 SCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFPVKLD 454 (569)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCeEEEE
Confidence 65543 3345677888999999999999999998887663 3346788899998888776443 3445544
Q ss_pred eCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCc
Q 007434 445 LAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISP 524 (604)
Q Consensus 445 ~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~ 524 (604)
.+.........+...+.+++.|+++||+||++++.|.|++...++. +.++|+|||+||++
T Consensus 455 ~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~~--------------------~~l~V~D~G~Gi~~ 514 (569)
T PRK10600 455 YQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQNQ--------------------VKLSVQDNGCGVPE 514 (569)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCE--------------------EEEEEEECCCCCCc
Confidence 4322222222245569999999999999999888888888665443 89999999999988
Q ss_pred CchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 525 QDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 525 ~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
+. ..+.|+||++|+++++.|||++++.+. +|+||+|++++|...
T Consensus 515 ~~------------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 515 NA------------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPEK 558 (569)
T ss_pred cc------------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecCC
Confidence 53 346799999999999999999999999 899999999999854
No 28
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=2.9e-28 Score=248.46 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH-HHH
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL-HAV 422 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l-~~~ 422 (604)
.+.|.+.++||+||||+.+.+.++.+.+... ++ ...+.+..+++...+++++.+++............+++ .++
T Consensus 137 ~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~ 211 (356)
T PRK10755 137 ERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDV 211 (356)
T ss_pred HHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHH
Confidence 3468999999999999999999988765422 12 33455667889999999999999766555555567888 888
Q ss_pred HHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCc
Q 007434 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFF 501 (604)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (604)
+..+...+......+++.+.+...+. +..+.+|+..+.+++.|+++||+||++ ++.|.|++...++.
T Consensus 212 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~----------- 279 (356)
T PRK10755 212 ILPSQDELSEMLEQRQQTLLLPESAA-DITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDGG----------- 279 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEeccCCC-ceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCE-----------
Confidence 88888888877777887777642232 345778999999999999999999997 45688887665543
Q ss_pred ccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCC-ceEEEE
Q 007434 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG-KGCTAI 580 (604)
Q Consensus 502 ~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g-~Gt~~~ 580 (604)
+.|+|+|||+||+++..+++|++|++.+. ..+|+|+||++|+++++.|||+++++|. ++ +||+|+
T Consensus 280 ---------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~~ 345 (356)
T PRK10755 280 ---------AVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRAW 345 (356)
T ss_pred ---------EEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEEE
Confidence 89999999999999999999999997653 3579999999999999999999999999 77 999999
Q ss_pred EEEEecC
Q 007434 581 FIVKLGI 587 (604)
Q Consensus 581 ~~lp~~~ 587 (604)
+.+|...
T Consensus 346 i~~p~~~ 352 (356)
T PRK10755 346 VWLPKAQ 352 (356)
T ss_pred EEecCCC
Confidence 9999654
No 29
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-25 Score=218.02 Aligned_cols=343 Identities=15% Similarity=0.198 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeecc
Q 007434 120 LFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ 199 (604)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~ 199 (604)
.++.....+..++.+.+.++.+++..|++.++.+..+...++.++-+++.+....++..+.+++.+.++......+...+
T Consensus 222 ~lY~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~ 301 (574)
T COG3850 222 KLYADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQW 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCc
Confidence 33555666778888899999999999999999999999999999999999999999999999988766543322221111
Q ss_pred CCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEE
Q 007434 200 QNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLM 279 (604)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~ 279 (604)
.. ..+ +...+ ... | ...| +...+...|.+.
T Consensus 302 di-----------------------~~~-d~~~~------------~~~----~---------~~~~-l~~~g~~Lg~l~ 331 (574)
T COG3850 302 DI-----------------------SEG-DQPSG------------LKW----P---------QEDP-LTQQGHLLGTLP 331 (574)
T ss_pred ce-----------------------ecC-CCCcc------------cch----h---------hhcc-hhhhhhhheeee
Confidence 10 000 00000 000 0 0001 344455555554
Q ss_pred ecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007434 280 LPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPM 359 (604)
Q Consensus 280 ~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL 359 (604)
. .+.+...+..++++++.+++.++...+..++.++ -.-++++...+..+++.|-+.|
T Consensus 332 ~----~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~~qQ-------------------LllmEERatIAReLHDSiAQsL 388 (574)
T COG3850 332 W----QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQQQQ-------------------LLLMEERATIARELHDSIAQSL 388 (574)
T ss_pred c----cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5678889999999999999999986654443221 1233677888889999999999
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhc
Q 007434 360 HAIIALSSLLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASV 436 (604)
Q Consensus 360 ~~i~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 436 (604)
+-+.-.+++|+.. ...++.++.+..+++..+..-.-++.++.-.| +....-++...+.+.++.+. ++
T Consensus 389 S~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~---~q 458 (574)
T COG3850 389 SFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFS---NQ 458 (574)
T ss_pred HHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCchHHHHHHHHHHHH---hc
Confidence 9998888888753 44566788888999998888888888888887 44446788888888888887 45
Q ss_pred cCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEE
Q 007434 437 KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVK 516 (604)
Q Consensus 437 ~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~ 516 (604)
.++.++++..-....+..-...++-||+.+.++||+||+.+.+|.|++...++. +.++|+
T Consensus 459 tg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~Ve 518 (574)
T COG3850 459 TGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTVE 518 (574)
T ss_pred cCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEEe
Confidence 666666553222111222235788999999999999999999999998887654 999999
Q ss_pred ecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEE
Q 007434 517 DSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 517 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
|||+|||+.. +..| ..||.||+++++.+||.+.+++. +|+||.+.+++|
T Consensus 519 DnG~Gi~~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~ 567 (574)
T COG3850 519 DNGVGIDEAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFP 567 (574)
T ss_pred eCCcCCCCcc-----------------CCCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEec
Confidence 9999999863 1234 89999999999999999999999 899999999998
No 30
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=5.7e-26 Score=240.32 Aligned_cols=238 Identities=24% Similarity=0.397 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-ELTPEQRLMVETILKSSNLLATLINDV 399 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l 399 (604)
+++.+....++...+++++..+...++...++||++|||+.+.+.++.+... ...++..+.++.+....+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777778888878888999999999999999999998887543 334556778888888999999999999
Q ss_pred HHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-C
Q 007434 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-G 478 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g 478 (604)
+.+++.+........+++++.+++.++.+.+......+++.+.++ .. ..+.+|+..+.+++.|+++||+||+++ +
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999888777888899999999999999988777777666554 32 347789999999999999999999975 5
Q ss_pred cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHH
Q 007434 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 558 (604)
.|.|++...++. +.|+|.|||.|||++..+++|++||+++.......+|+|+||++|+++
T Consensus 374 ~I~i~~~~~~~~--------------------~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 374 TITVRIERRSDE--------------------VRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred eEEEEEEecCCE--------------------EEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 688888776553 899999999999999999999999998765445567999999999999
Q ss_pred HHHcCCEEEEEecCCCceEEEEEEEE
Q 007434 559 VNLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 559 v~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
++.|||++.+++ +++||+|++++|
T Consensus 434 ~~~~~G~~~~~~--~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES--PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe--CCCceEEEEecC
Confidence 999999999998 478999999997
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=6.9e-27 Score=247.56 Aligned_cols=240 Identities=25% Similarity=0.355 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (604)
+++.+....+++..+++++..+...++.+.++||++|||+.+....+++........ .+..+....+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~~---~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGESK---ELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCChH---HHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777888899999999999999999998888765433222 35668888999999999999
Q ss_pred HHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcE
Q 007434 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i 480 (604)
.+++.+.. .....+.+++..++.+++..+.......++.++++..++ +..+.+|+..+.+++.|+++||+||++ +.|
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997653 345667899999999999888766677787777764333 335778999999999999999999986 567
Q ss_pred EEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHH
Q 007434 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~ 560 (604)
.|++...++. +.|+|+|||+||+++.++++|+||++++....+..+|.|+||++|+++++
T Consensus 374 ~i~~~~~~~~--------------------~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 374 EVAFSVDKDG--------------------LTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred EEEEEEECCE--------------------EEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHH
Confidence 8877765553 89999999999999999999999999876544556799999999999999
Q ss_pred HcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 561 LMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 561 ~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
.|||++.+.|. +++||+|++.+|+..
T Consensus 434 ~~~G~l~~~s~-~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 434 QHRGWVKAEDS-PLGGLRLTIWLPLYK 459 (461)
T ss_pred HCCCEEEEEEC-CCCeEEEEEEeeCCC
Confidence 99999999998 789999999999854
No 32
>PRK09835 sensor kinase CusS; Provisional
Probab=99.96 E-value=1.3e-26 Score=246.94 Aligned_cols=241 Identities=22% Similarity=0.368 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDV 399 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 399 (604)
+++.+....++...+++++..+...++.+.++||++||++.+.+..+.+.... ...+..+.+..+.....++..+++++
T Consensus 239 dEl~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~l 318 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDM 318 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666667777777777889999999999999999998888765443 33455667777888889999999999
Q ss_pred HHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC-
Q 007434 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g- 478 (604)
+.+++.+.........++++.++++.+...+......+++.+.+. .. +..+.+|+..+.+++.|+++||+||++++
T Consensus 319 l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~ 395 (482)
T PRK09835 319 LFLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFV--GD-PCQVAGDPLMLRRAISNLLSNALRYTPAGE 395 (482)
T ss_pred HHHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEe--CC-CcEEEECHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999998877776777899999999999999988777787777664 32 23467899999999999999999999754
Q ss_pred cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHH
Q 007434 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 558 (604)
.|.|++...++. +.|+|+|+|.|++++..+++|+||++.+....+..+|+|+||++|+++
T Consensus 396 ~I~i~~~~~~~~--------------------~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 396 AITVRCQEVDHQ--------------------VQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred eEEEEEEEeCCE--------------------EEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHH
Confidence 588887665543 899999999999999999999999998765444557999999999999
Q ss_pred HHHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 559 VNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 559 v~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
++.|||+++++|. + +||+|++.+|..
T Consensus 456 ~~~~~g~i~~~s~-~-~g~~~~i~lP~~ 481 (482)
T PRK09835 456 VVAHKGTVAVTSD-A-RGTRFVISLPRL 481 (482)
T ss_pred HHHCCCEEEEEEC-C-CcEEEEEEeeCC
Confidence 9999999999997 4 699999999953
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=4.3e-27 Score=237.92 Aligned_cols=217 Identities=31% Similarity=0.484 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQET--ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
+..|.+.++|+++|||+.|.++++.+... ..++...++++.+....+++..++++++.+++.+.+.......++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 34688999999999999999999988654 4455677789999999999999999999999988767777778999999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEF 500 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~ 500 (604)
++..+...+......+++.+.+..+. +..+.+|+..+.+++.||+.||++|++ ++.|.|++...++.
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~---------- 261 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGG---------- 261 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCCE----------
Confidence 99999999999888888888888733 335778999999999999999999987 45688877665543
Q ss_pred cccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEE
Q 007434 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (604)
Q Consensus 501 ~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~ 580 (604)
+.+.|.|||+||+++..+++|+||++.+.......+|.|+||++|+.+++.|||++++.|. +++||+|+
T Consensus 262 ----------~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~~~ 330 (333)
T TIGR02966 262 ----------AEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGSTFS 330 (333)
T ss_pred ----------EEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeEEE
Confidence 8999999999999999999999999876544444678999999999999999999999999 89999999
Q ss_pred EEE
Q 007434 581 FIV 583 (604)
Q Consensus 581 ~~l 583 (604)
+++
T Consensus 331 i~l 333 (333)
T TIGR02966 331 FIF 333 (333)
T ss_pred EEC
Confidence 875
No 34
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=1.3e-26 Score=243.26 Aligned_cols=229 Identities=24% Similarity=0.362 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (604)
+++.+....+++..+++++..+.+..|.+.++||+||||+.+...++.+.++ .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666677777777778888999999999999999999888776432 12334567888999999999999
Q ss_pred HHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcE
Q 007434 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i 480 (604)
.+.+.... ....++++.+++++++.... ..+..+.++++.. +..+.+|+..+.+++.||++||+||+ .+.|
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i 351 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWI 351 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 99886532 34567899999999887654 2445566666544 33577899999999999999999998 4668
Q ss_pred EEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHH
Q 007434 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~ 560 (604)
.|++...++. +.|+|.|||+||+++..+++|+||++.+.. ++.+|+|+||++|+++++
T Consensus 352 ~i~~~~~~~~--------------------~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 352 KVSSGTEGKR--------------------AWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred EEEEEecCCE--------------------EEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHHHHHHHH
Confidence 8887765443 899999999999999999999999987643 335789999999999999
Q ss_pred HcCCEEEEEecCCCceEEEEEEEEec
Q 007434 561 LMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 561 ~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
.|||++.+.+. +++||+|++.+|+.
T Consensus 410 ~~~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 410 QHNGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred HCCCEEEEEEC-CCCcEEEEEEEeCC
Confidence 99999999998 89999999999975
No 35
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=1.9e-26 Score=243.07 Aligned_cols=234 Identities=20% Similarity=0.297 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPE-QRLMVETILKSSNLLATLINDV 399 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~l 399 (604)
+++.+....+++...++++..+..++|.+.++||++||++.+.+..+.+.....+++ ....+..+...++++..+++++
T Consensus 214 ~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l 293 (449)
T PRK10337 214 SEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQL 293 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666667777776777789999999999999999988887765444443 4567888999999999999999
Q ss_pred HHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC-
Q 007434 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g- 478 (604)
+.+++.+........+++++.+++++++..+......+++.+.++.++.. ..+.+|+..+.+++.|+++||+||++++
T Consensus 294 l~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~ 372 (449)
T PRK10337 294 LTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGS 372 (449)
T ss_pred HHHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999876655556678999999999999998888889998988876543 3457799999999999999999999754
Q ss_pred cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHH
Q 007434 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 558 (604)
.|.|++.. ..++|+|||+|||++..+++|+||++.+. +..+|+|+||++|+++
T Consensus 373 ~i~i~~~~------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 373 VVDVTLNA------------------------RNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSIVRRI 425 (449)
T ss_pred eEEEEEEe------------------------eEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHHHHHH
Confidence 56666432 35899999999999999999999998653 2356899999999999
Q ss_pred HHHcCCEEEEEecCCCceEEEEEEE
Q 007434 559 VNLMEGHIWIESEGLGKGCTAIFIV 583 (604)
Q Consensus 559 v~~~gG~i~i~s~~~g~Gt~~~~~l 583 (604)
+++|||++++++. +++|++|++.+
T Consensus 426 ~~~~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 426 AKLHGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred HHHcCCEEEEEec-CCCeEEEEEeC
Confidence 9999999999998 78999998864
No 36
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.3e-26 Score=235.77 Aligned_cols=219 Identities=24% Similarity=0.364 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
+..+.|++.++||+||||++|.++++++.+...++..+++++.+...++++..++++++.+.+.. .....++..
T Consensus 128 ~~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~ 201 (348)
T PRK11073 128 VAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHK 201 (348)
T ss_pred HHHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHH
Confidence 34578999999999999999999999988777777888999999999999999999998776532 234678999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC-C-CCcEEEEEEEecccccccCCCCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-K-EGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~-~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
+++.+...+.... .+++.+.++.++..+. +.+|+..+.+++.||++||++|+ + ++.|.|++........
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~------- 272 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTL------- 272 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccccc-------
Confidence 9998888776544 3567777776666553 66799999999999999999996 3 5567776543211100
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~ 579 (604)
........+.+.|.|||+||+++..+++|+||++++ .+|+|+||++||++++.|||+|+++|. +| ||+|
T Consensus 273 ---~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~------~~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f 341 (348)
T PRK11073 273 ---HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEF 341 (348)
T ss_pred ---CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC------CCCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEE
Confidence 000011136899999999999999999999999877 469999999999999999999999998 67 5999
Q ss_pred EEEEEec
Q 007434 580 IFIVKLG 586 (604)
Q Consensus 580 ~~~lp~~ 586 (604)
++.+|+.
T Consensus 342 ~i~lP~~ 348 (348)
T PRK11073 342 SVYLPIR 348 (348)
T ss_pred EEEEecC
Confidence 9999963
No 37
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=2e-26 Score=245.15 Aligned_cols=240 Identities=25% Similarity=0.384 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (604)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (604)
+++.+....+++...++++. +...++.+.++|+++||++.+.+.++.+.+....++..+.++.+....+++..++++++
T Consensus 234 dEi~~l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 312 (475)
T PRK11100 234 SELRELAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLL 312 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555433 34567889999999999999999999988866667788899999999999999999999
Q ss_pred HHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCc
Q 007434 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGN 479 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~ 479 (604)
.+++.+..........+++.++++++...+.......++.+.+..+ +..+..|...+.+++.|++.||+||+. ++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~ 389 (475)
T PRK11100 313 ELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGT 389 (475)
T ss_pred HHHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999887766666789999999999999999888888888887765 334667999999999999999999986 467
Q ss_pred EEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHH
Q 007434 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv 559 (604)
|.|++...++. +.|+|+|||.|||++.++++|++|++.+.. ....+|+|+||++|++++
T Consensus 390 i~i~~~~~~~~--------------------~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 390 ITLSAEVDGEQ--------------------VALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred EEEEEEEcCCE--------------------EEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHH
Confidence 88888776654 899999999999999999999999987532 123578999999999999
Q ss_pred HHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 560 NLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 560 ~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
+.|||++.++|. +++||+|.+.+|..
T Consensus 449 ~~~~G~i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 449 RLHGGEVTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred HHCCCEEEEEEc-CCCeEEEEEEeeCC
Confidence 999999999999 88999999999964
No 38
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=1.2e-25 Score=246.81 Aligned_cols=216 Identities=28% Similarity=0.466 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
+..+.+++.++||++|||+.|.++++.+.....+++..+.++.+.+..+++..++++++.+++... ....++++..
T Consensus 388 ~~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~ 463 (607)
T PRK11360 388 AALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE----SQWQPVSLNA 463 (607)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc----CccceecHHH
Confidence 456789999999999999999999999877766777889999999999999999999999988643 3345899999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCC
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEF 500 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~ 500 (604)
++.++...+......+++.+.+..+++.+. +..|+..+.+++.|++.||++|.+ +|.|+|++...++.
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~---------- 532 (607)
T PRK11360 464 LVEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG---------- 532 (607)
T ss_pred HHHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC----------
Confidence 999999998877677888888887766554 567999999999999999999976 56688877655442
Q ss_pred cccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEE
Q 007434 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (604)
Q Consensus 501 ~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~ 580 (604)
.+.|+|+|||+||+++..+++|+||++++ ..|+|+||++||++++.|||+++++|. +|+||+|+
T Consensus 533 ---------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~ 596 (607)
T PRK11360 533 ---------QVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFT 596 (607)
T ss_pred ---------EEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEE
Confidence 28999999999999999999999999876 468999999999999999999999999 89999999
Q ss_pred EEEEecCC
Q 007434 581 FIVKLGIP 588 (604)
Q Consensus 581 ~~lp~~~~ 588 (604)
+++|+...
T Consensus 597 i~lp~~~~ 604 (607)
T PRK11360 597 LYLPINPQ 604 (607)
T ss_pred EEecCCCC
Confidence 99998543
No 39
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.94 E-value=2e-24 Score=226.99 Aligned_cols=246 Identities=17% Similarity=0.217 Sum_probs=178.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007434 290 VHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREA-ETAIRARNDFLAVMNHEMRTPMHAIIALSSL 368 (604)
Q Consensus 290 ~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~ 368 (604)
....+++..++.++...+......++.++.+++++++..+.++..+++ +.+.+.++++++.++||++|||++|.+..+.
T Consensus 247 ~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a~l 326 (495)
T PRK11644 247 DHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQAGI 326 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344456666666665555444444444444444444333222222222 2223456789999999999999999999988
Q ss_pred HhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCC
Q 007434 369 LQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAP 447 (604)
Q Consensus 369 l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 447 (604)
+++.. .+++.++..+.+.+.+.++.+.+++++...+ +...+++++.+.++++.+.+.... .++.++++.+.
T Consensus 327 l~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~~~ 398 (495)
T PRK11644 327 IKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELED--RGIVSHLDWRI 398 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHhh--cCceEEEEecC
Confidence 86543 3445667788888888999999999876554 223447899999999988776433 44455555433
Q ss_pred CCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch
Q 007434 448 DLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (604)
Q Consensus 448 ~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 527 (604)
+.+.....++..+.++++|+++||+||+++++|.|++...++. +.++|+|||+|+|++
T Consensus 399 ~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~~--------------------i~l~V~DnG~Gi~~~-- 456 (495)
T PRK11644 399 DESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDER--------------------LMLVIEDDGSGLPPG-- 456 (495)
T ss_pred CcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCCE--------------------EEEEEEECCCCCCcC--
Confidence 3333455577889999999999999999988888888766553 899999999999875
Q ss_pred hhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEe
Q 007434 528 PNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (604)
Q Consensus 528 ~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~ 585 (604)
..|.|+||+++|++++.|||+++++| ++||+|++++|.
T Consensus 457 -----------------~~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 457 -----------------SGQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred -----------------CCCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 24679999999999999999999988 569999999995
No 40
>PRK13557 histidine kinase; Provisional
Probab=99.94 E-value=2e-24 Score=233.57 Aligned_cols=232 Identities=22% Similarity=0.297 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeee
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQET-----ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGT 416 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~ 416 (604)
+.+..++..++|+++|||+.|.++++++.+. .......+.++.+...++++..++++++.+++.. ......
T Consensus 161 ~~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~ 236 (540)
T PRK13557 161 EALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRV 236 (540)
T ss_pred HHhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcc
Confidence 4567789999999999999999999987542 2335567788999999999999999999998743 244457
Q ss_pred ecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEecccccccC
Q 007434 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDS 495 (604)
Q Consensus 417 ~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~~~~~~~~~ 495 (604)
+++..++..+...+... ..+++.+.+..++..+. +..|+..+.+++.||+.||+||++. +.+.|...........
T Consensus 237 ~~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~-- 312 (540)
T PRK13557 237 LNLNGLVSGMGELAERT-LGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDED-- 312 (540)
T ss_pred cCHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccc--
Confidence 89999998887776543 33667777776665543 5669999999999999999999864 4566665432211000
Q ss_pred CCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCc
Q 007434 496 RAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGK 575 (604)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~ 575 (604)
.. .......+..+.|+|.|||+||+++..+++|+||++++.. .+|+|+||++||++++.|||+|+++|. +|+
T Consensus 313 -~~--~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~----~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~ 384 (540)
T PRK13557 313 -LA--MYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE----GKGTGLGLSMVYGFAKQSGGAVRIYSE-VGE 384 (540)
T ss_pred -cc--cccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC----CCCCCccHHHHHHHHHHCCCEEEEEec-CCC
Confidence 00 0000112235889999999999999999999999998743 579999999999999999999999999 899
Q ss_pred eEEEEEEEEecCCC
Q 007434 576 GCTAIFIVKLGIPE 589 (604)
Q Consensus 576 Gt~~~~~lp~~~~~ 589 (604)
||+|++++|.....
T Consensus 385 G~~f~i~lP~~~~~ 398 (540)
T PRK13557 385 GTTVRLYFPASDQA 398 (540)
T ss_pred ceEEEEEeeCCCCc
Confidence 99999999986543
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=1e-23 Score=212.87 Aligned_cols=219 Identities=40% Similarity=0.627 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC-cceeeeeecHHH
Q 007434 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS-LQLQIGTFNLHA 421 (604)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~-~~~~~~~~~l~~ 421 (604)
....+...++|+++||++.+.+..+.+... ........+..+....+++..++++++.+++..... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855544 222256777888889999999999999999987652 233356778999
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCc
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFF 501 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (604)
++.++...+........+.+....+ .+..+.+|...+.+++.||+.||+||++.+.|.|.+...++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~----------- 259 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDEQ----------- 259 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCCe-----------
Confidence 9999999998877777777775544 233567789999999999999999999866788887766552
Q ss_pred ccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEE
Q 007434 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (604)
Q Consensus 502 ~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~ 581 (604)
+.++|.|+|+||+++..+++|+||++++.. .+|+|+||++||++++.|||++.+++. +|.||+|++
T Consensus 260 ---------i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~----~~g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i 325 (336)
T COG0642 260 ---------VTISVEDTGPGIPEEELERIFEPFFRTDKS----RSGTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTI 325 (336)
T ss_pred ---------EEEEEEcCCCCCCHHHHHHhccCeeccCCC----CCCCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEE
Confidence 899999999999999999999999999854 339999999999988999999999999 788999999
Q ss_pred EEEecCCC
Q 007434 582 IVKLGIPE 589 (604)
Q Consensus 582 ~lp~~~~~ 589 (604)
++|.....
T Consensus 326 ~lP~~~~~ 333 (336)
T COG0642 326 RLPLAPAA 333 (336)
T ss_pred EEeccccc
Confidence 99987653
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.92 E-value=4e-23 Score=197.31 Aligned_cols=227 Identities=19% Similarity=0.342 Sum_probs=183.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007434 329 ALDSARREAE--TAIRARNDFLAVMNHEMRTPMHAIIALSSLLQ---ETELTPEQRLMVETILKSSNLLATLINDVLDLS 403 (604)
Q Consensus 329 ~l~~~~~~~~--~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (604)
.++.++.++- .+.+..++-+.+++||+++||++++.|+=... ++...+....+++.+..-++|+..+++.++.|+
T Consensus 434 ~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~ 513 (673)
T COG4192 434 HLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFA 513 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454443 34456688889999999999999998764433 456677889999999999999999999999999
Q ss_pred hhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC--CcEE
Q 007434 404 RLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE--GNIS 481 (604)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~--g~i~ 481 (604)
|..++..+ ..|+++++.+..+...++...+.+.+.+.. +.+ ..++.+|...++||+.|++-||++++.. .-|.
T Consensus 514 Rk~s~~~~--lqpV~L~~~v~~AweLl~~khk~rQ~~Li~--ptD-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~ 588 (673)
T COG4192 514 RKNSSDES--LQPVRLNSVVEQAWELLQTKHKRRQIKLIN--PTD-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIK 588 (673)
T ss_pred hccCCCCC--cccccHHHHHHHHHHHHHhhhhhccccccC--Ccc-cceecchhhhHHHHHHHHHHHHHhhhccCCceEE
Confidence 97665533 449999999999999999766666655543 334 3468999999999999999999998753 3455
Q ss_pred EEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHH
Q 007434 482 ITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL 561 (604)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~ 561 (604)
+.+..+..+ ..++.|.|||+|.|-+..+++|.||.++|. -|.|+||+||..++++
T Consensus 589 ~~~~~~~~e-------------------~l~i~i~DnGqGwp~~l~dkLl~PFttsK~------vgLGlGLSIsqSlmeq 643 (673)
T COG4192 589 LIALGTEQE-------------------MLRIAIIDNGQGWPHELVDKLLTPFTTSKE------VGLGLGLSISQSLMEQ 643 (673)
T ss_pred EEeecCccc-------------------ceEEEEecCCCCCchhHHHHhcCCcccccc------cccccchhHHHHHHHH
Confidence 555443333 389999999999999999999999999884 5999999999999999
Q ss_pred cCCEEEEEecCCCceEEEEEEEEec
Q 007434 562 MEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 562 ~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
|.|++.+.|+ ..+|..+.+.+...
T Consensus 644 mqG~l~lASt-Lt~nA~ViL~f~v~ 667 (673)
T COG4192 644 MQGRLALAST-LTKNAMVILEFQVD 667 (673)
T ss_pred hcCcchHhhh-cccCcEEEEEEeec
Confidence 9999999999 88999988877654
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.92 E-value=5.3e-24 Score=241.80 Aligned_cols=211 Identities=14% Similarity=0.164 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 007434 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS 409 (604)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~ 409 (604)
.+++++++++++++++.|++.++||+||||+.|.++++++.+...+++....+.........+....+.+. +
T Consensus 591 rK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~----- 662 (807)
T PRK13560 591 RKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLY---Q----- 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh---c-----
Confidence 34555666677788899999999999999999999999988777777766666555555444444444432 2
Q ss_pred cceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC----CCcEEEEEE
Q 007434 410 LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK----EGNISITGF 485 (604)
Q Consensus 410 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~ 485 (604)
.....++++.+++.++...+..........+.+.++.+.......+...+.+|+.||++||+||+. .|.|+|++.
T Consensus 663 -~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~ 741 (807)
T PRK13560 663 -SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIR 741 (807)
T ss_pred -cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEE
Confidence 123447899999999998888766666555666665544433444566788999999999999974 245777766
Q ss_pred EecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCE
Q 007434 486 VAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGH 565 (604)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~ 565 (604)
..++. ++.|+|+|||+|||++.. ...+.||||+|||++|+.|||+
T Consensus 742 ~~~~~-------------------~v~i~V~D~G~GI~~~~~----------------~~~~~gLGLai~~~iv~~~gG~ 786 (807)
T PRK13560 742 EQGDG-------------------MVNLCVADDGIGLPAGFD----------------FRAAETLGLQLVCALVKQLDGE 786 (807)
T ss_pred EcCCC-------------------EEEEEEEeCCCcCCcccc----------------ccccCCccHHHHHHHHHHcCCE
Confidence 54332 499999999999998742 1356789999999999999999
Q ss_pred EEEEecCCCceEEEEEEEEecC
Q 007434 566 IWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 566 i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
|+++|. +||+|+|+||+..
T Consensus 787 I~v~S~---~Gt~F~i~lP~~~ 805 (807)
T PRK13560 787 IALDSR---GGARFNIRFPMSP 805 (807)
T ss_pred EEEEcC---CceEEEEEecCCC
Confidence 999985 6999999999754
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-21 Score=192.10 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=142.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHH
Q 007434 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (604)
Q Consensus 346 ~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 425 (604)
.-++..+||+.|-|++|.|++++-. ..+..+.|.+.++.-.+.++.+..-.+ .--+..++-.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-------yd~a~~~I~~~~~~qq~~~~~l~~~i~-----------~~~lAg~Llg 396 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-------YDDALDYIQQESEEQQELIDSLSEKIK-----------DPVLAGFLLG 396 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHhhhhhhHHHHHHhcc-----------cHHHHHHHHh
Confidence 3457778999999999999988622 223333444444434444444322211 1123333222
Q ss_pred HHHHhhhhhhccCcEEEEEeCCCCCcce-EccHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCC
Q 007434 426 VLNLIKPIASVKKLLVALNLAPDLPEYA-VGDEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEF 500 (604)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~ 500 (604)
- ...+++.++.+.++....++... ..+...+-.++-||++||+++.. .+.|.+++...++.
T Consensus 397 K----~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~---------- 462 (537)
T COG3290 397 K----ISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDE---------- 462 (537)
T ss_pred H----HHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCE----------
Confidence 2 22345678777777665554322 23678899999999999999853 24577777776664
Q ss_pred cccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEE
Q 007434 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (604)
Q Consensus 501 ~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~ 580 (604)
+.|+|.|+|+|||++..+++|+..+++++ ..+.|+||+++|..|+.+||.|+++|+ .+.||+|+
T Consensus 463 ----------lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~ 526 (537)
T COG3290 463 ----------LVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFS 526 (537)
T ss_pred ----------EEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEE
Confidence 99999999999999999999999999984 478999999999999999999999999 79999999
Q ss_pred EEEEecCCC
Q 007434 581 FIVKLGIPE 589 (604)
Q Consensus 581 ~~lp~~~~~ 589 (604)
+.+|.....
T Consensus 527 i~iP~~~~~ 535 (537)
T COG3290 527 IYIPKVKER 535 (537)
T ss_pred EECCCCccc
Confidence 999987543
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.92 E-value=2.1e-22 Score=217.81 Aligned_cols=195 Identities=24% Similarity=0.314 Sum_probs=135.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHH
Q 007434 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (604)
Q Consensus 346 ~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 425 (604)
++++.++||++|||++|.+++++... ++..+++. +.+.+....++++....+ .++ +...+..
T Consensus 341 ~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~ 402 (542)
T PRK11086 341 DALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYIL---KTANNYQEEIGSLLGKIK----------SPV-IAGFLLG 402 (542)
T ss_pred HHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHH---HHHHHHHHHHHHHHHhcc----------CHH-HHHHHHH
Confidence 45567899999999999998876432 22222222 222222222222222111 011 1112111
Q ss_pred HHHHhhhhhhccCcEEEEEeCCCCCcce-EccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCc
Q 007434 426 VLNLIKPIASVKKLLVALNLAPDLPEYA-VGDEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFF 501 (604)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (604)
....+..+++.+.+..+...+... ..+...+.+++.||++||+||+. ++.|.|++...++.
T Consensus 403 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~----------- 467 (542)
T PRK11086 403 ----KISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNGW----------- 467 (542)
T ss_pred ----HHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCE-----------
Confidence 122344577777777655544322 12345799999999999999963 45678777665543
Q ss_pred ccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEE
Q 007434 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (604)
Q Consensus 502 ~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~ 581 (604)
+.|+|+|||+||+++..+++|+||++++ .+|+|+||++||++++.|||+|+++|. +|+||+|++
T Consensus 468 ---------~~i~V~D~G~gi~~~~~~~iF~~~~~~~------~~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f~i 531 (542)
T PRK11086 468 ---------LHCEVSDDGPGIAPDEIDAIFDKGYSTK------GSNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQFFV 531 (542)
T ss_pred ---------EEEEEEECCCCCCHHHHHHHHhCCCccC------CCCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEEEE
Confidence 8999999999999999999999999877 569999999999999999999999999 899999999
Q ss_pred EEEecCCC
Q 007434 582 IVKLGIPE 589 (604)
Q Consensus 582 ~lp~~~~~ 589 (604)
++|.....
T Consensus 532 ~lP~~~~~ 539 (542)
T PRK11086 532 QIPWDGER 539 (542)
T ss_pred EEeCCCCc
Confidence 99986543
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.91 E-value=7.3e-20 Score=198.88 Aligned_cols=250 Identities=16% Similarity=0.194 Sum_probs=164.4
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDF 347 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l 347 (604)
+...+...|.+...... ...+..++..++.+++.++...+..++.++. ...+++..+
T Consensus 311 ~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~l 367 (565)
T PRK10935 311 LTMEDTVLGYLHWQASL----PCPDEPLMNNVAQMLGRGLYFNQAQKQQQQL-------------------LLMEERATI 367 (565)
T ss_pred EeeCCcceEEEEecCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 33444446666654432 3467788999998888877654444332111 001222233
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHH
Q 007434 348 LAVMNHEMRTPMHAIIALSSLLQET--ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (604)
Q Consensus 348 ~~~i~Hel~~pL~~i~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 425 (604)
+..++|.+.+++..+....+++... ...++..+.+..+.+...++...+++++...+ ....++++.+.+.+
T Consensus 368 a~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~~ 440 (565)
T PRK10935 368 ARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSALEE 440 (565)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHHH
Confidence 3334444444444444444444432 22345556666677777777777777665443 33457899999999
Q ss_pred HHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCC
Q 007434 426 VLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPI 505 (604)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (604)
++..+... .++.+.+..+.+.......+...+.|++.|++.||+||++.+.+.+.+...++.
T Consensus 441 ~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~--------------- 502 (565)
T PRK10935 441 MLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG--------------- 502 (565)
T ss_pred HHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC---------------
Confidence 99888753 233344433222122233345679999999999999999888888887765332
Q ss_pred CCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEe
Q 007434 506 ENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (604)
Q Consensus 506 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~ 585 (604)
.+.++|.|||+|||++. ..|+|+||++|+++++.|||+|+++|. +|+||+|++.+|.
T Consensus 503 ----~~~i~V~D~G~Gi~~~~------------------~~~~glGL~i~~~iv~~~~G~i~v~s~-~~~Gt~~~i~lP~ 559 (565)
T PRK10935 503 ----EHTVSIRDDGIGIGELK------------------EPEGHYGLNIMQERAERLGGTLTISQP-PGGGTTVSLTFPS 559 (565)
T ss_pred ----EEEEEEEECCcCcCCCC------------------CCCCCcCHHHHHHHHHHcCCEEEEEEC-CCCcEEEEEEECC
Confidence 38999999999998743 457899999999999999999999999 8999999999997
Q ss_pred cCC
Q 007434 586 GIP 588 (604)
Q Consensus 586 ~~~ 588 (604)
...
T Consensus 560 ~~~ 562 (565)
T PRK10935 560 QQE 562 (565)
T ss_pred CCC
Confidence 643
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=8.9e-22 Score=212.72 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=143.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHH
Q 007434 347 FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREV 426 (604)
Q Consensus 347 l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 426 (604)
.+..++||++|||++|.++++.- +.++.++.+...+.++..+++.+...... -.+..++
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~-----------~~~~~~l--- 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD-----------RQVAGLL--- 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc-----------HHHHHHH---
Confidence 34568999999999999987642 23345667777788888888877665331 1112221
Q ss_pred HHHhhhhhhccCcEEEEEeCCCCCc-ceEccHHHHHHHHHHHHHHHhhcC---C--CCcEEEEEEEecccccccCCCCCC
Q 007434 427 LNLIKPIASVKKLLVALNLAPDLPE-YAVGDEKRLMQTLLNVVGNAVKFT---K--EGNISITGFVAKSESLRDSRAPEF 500 (604)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NA~k~~---~--~g~i~i~~~~~~~~~~~~~~~~~~ 500 (604)
... ...+.+.++.+.+..+..... ....|+..+.+++.||++||++|. + ++.|.|++...++.
T Consensus 400 ~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~---------- 468 (545)
T PRK15053 400 FGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDD---------- 468 (545)
T ss_pred HHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCE----------
Confidence 111 122344666666654433211 134589999999999999999994 2 24577766554443
Q ss_pred cccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEE
Q 007434 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (604)
Q Consensus 501 ~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~ 580 (604)
+.++|+|||+|||++..+++|++||+++.. ..+|+|+||++||++++.|||+|+++|. +|.||+|+
T Consensus 469 ----------~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~ 534 (545)
T PRK15053 469 ----------VVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFS 534 (545)
T ss_pred ----------EEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEE
Confidence 899999999999999999999999998742 2357999999999999999999999999 89999999
Q ss_pred EEEEecCC
Q 007434 581 FIVKLGIP 588 (604)
Q Consensus 581 ~~lp~~~~ 588 (604)
++||...+
T Consensus 535 i~lP~~~~ 542 (545)
T PRK15053 535 IFIPKVKP 542 (545)
T ss_pred EEECCCCC
Confidence 99997543
No 48
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-19 Score=168.22 Aligned_cols=245 Identities=16% Similarity=0.223 Sum_probs=187.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007434 290 VHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNI-ALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSL 368 (604)
Q Consensus 290 ~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~ 368 (604)
.+..+++-.++.|.-..+..--..+++++.++.+...-. ...-+++-...++..++..++.+++|+.+.+++|...+.+
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 355677777777764444333333334444444333211 1222333444555678899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCC
Q 007434 369 LQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPD 448 (604)
Q Consensus 369 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 448 (604)
.++..+++..++....|.+-+.++.+-+++++.--| +...+...+.+.++++++.++ ..++++.++++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEeccccC
Confidence 998888888889899999999999998888876655 234447889999999999887 577888877776544
Q ss_pred CCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 449 LPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 449 ~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
....-...+.-++++.+++++|.+||+++..|+|..+..++. +.++|+|||.|+|+.
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~--------------------l~Lei~DdG~Gl~~~--- 456 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDER--------------------LMLEIEDDGSGLPPG--- 456 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCcE--------------------EEEEEecCCcCCCCC---
Confidence 322222334579999999999999999999999999887775 899999999999874
Q ss_pred hhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEE
Q 007434 529 NLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 529 ~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
.+-.|+||..++++|..+||++.++|. .||++.+.+|
T Consensus 457 ----------------~~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 457 ----------------SGVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred ----------------CCccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 356799999999999999999999997 6999999999
No 49
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.85 E-value=1e-22 Score=222.28 Aligned_cols=430 Identities=42% Similarity=0.578 Sum_probs=317.8
Q ss_pred CCCcCCCC--CCChhhhhHHHHhhhhHHHHHHHhhHhHHHHHHHHhcCCCC-chHHHHHHHHHHHHhhhHHHhhHHhccc
Q 007434 2 ESCNCIEP--QWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFP-YRWVLVQFGAFIVLCGATHLINLWTFNM 78 (604)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~-~~~~~~lf~~fi~~cg~thl~~i~~~~~ 78 (604)
..|||.+. .+...+......+.+|.+|+.|||++|..++||..+...++ +.|....|..|+..|+.+|.+..|+-..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 46999986 55566667788899999999999999999999999988875 9999999999999999999999999533
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCHHHHHHHH---HHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 007434 79 H-SRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNK---AAELDREMGLIRTQEETGRHVRMLTHEIR 154 (604)
Q Consensus 79 ~-~~~~~~~~~~~k~~ta~vs~~tai~l~~llp~~l~l~s~~~~~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 154 (604)
+ ...+.......+..++.++..++...+.++|..+..+.++...++. ..++.++........+.....+..+..+.
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 3 3334444455678888899999999999999999999988876665 44444433322222222222222222222
Q ss_pred ccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCcccc
Q 007434 155 STLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVAR 234 (604)
Q Consensus 155 ~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~ 234 (604)
.+.+.+.++........+.+..+.+..
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~----------------------------------------------------- 216 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAV----------------------------------------------------- 216 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcc-----------------------------------------------------
Confidence 222222222221111111111110000
Q ss_pred ccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007434 235 LRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILE 314 (604)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~ 314 (604)
T Consensus 217 -------------------------------------------------------------------------------- 216 (786)
T KOG0519|consen 217 -------------------------------------------------------------------------------- 216 (786)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 007434 315 ESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLAT 394 (604)
Q Consensus 315 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~ 394 (604)
.......+.+.++||+++|++. +....+.....+.+++.+.......+.....
T Consensus 217 -------------------------~~~sq~~~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 217 -------------------------WSPSQKGFLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred -------------------------cCccchhhcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccch
Confidence 0011122788899999999987 4445555667788899999999999999999
Q ss_pred HHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhc
Q 007434 395 LINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKF 474 (604)
Q Consensus 395 li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~ 474 (604)
+++++++.+..+.+..++...++++..++..+.+.+...+..++..+...++.+.|..+.+|+..+.|++.|++.||+|+
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 99999999999999999999999999999999999999999999988888888878888899999999999999999999
Q ss_pred CCCCcEEEEEEEeccccccc---------------------------CCCCCCcccCC-CCceEEEEEEEecCCCCCcCc
Q 007434 475 TKEGNISITGFVAKSESLRD---------------------------SRAPEFFPVPI-ENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 475 ~~~g~i~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~-~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
+..|.+..++.........+ .+.+....... ..-..-.+.+.|+|.+++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 98888877776555322100 00000000000 001224567889999999999
Q ss_pred hhh-hhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCCCC
Q 007434 527 IPN-LFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSN 592 (604)
Q Consensus 527 ~~~-if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~~~ 592 (604)
... +|.+|-+......+..+|+|+|+.+++.+++.++|.+.+.+. ...|++|+|.+++..+....
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~ 495 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISC-ISLGKTFSFTLDLLTNLPKS 495 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhh-hccCceeeEEEEeccCCCcc
Confidence 888 999998888777777899999999999999999999999998 78999999999998765444
No 50
>PRK13559 hypothetical protein; Provisional
Probab=99.84 E-value=9.6e-20 Score=186.21 Aligned_cols=186 Identities=17% Similarity=0.209 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHH
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVF 423 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l 423 (604)
..+|++.++|+++|||+.|.++++++... .+..++++.+.....++..+++++++..+ ..++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 34688889999999999999999987632 22345677788888888888888766533 3478999999
Q ss_pred HHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC----CCCcEEEEEEEecccccccCCCCC
Q 007434 424 REVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~----~~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
+.++..+... +..+.+..+ ..+ ....+...+.+||.||+.||+||+ ++|.|+|++......
T Consensus 238 ~~~~~~~~~~----~~~i~~~~~-~~~-~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~--------- 302 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEGP-GIR-LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEG--------- 302 (361)
T ss_pred HHHHHhhcCC----CceEEEECC-Cee-eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCC---------
Confidence 9998877632 334444432 211 111123569999999999999993 356788887322211
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHH-cCCEEEEEecCCCceEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL-MEGHIWIESEGLGKGCT 578 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~-~gG~i~i~s~~~g~Gt~ 578 (604)
..+.+.|.|||.|++++ ..|+|+||.+|+++++. |||++++++. +.||+
T Consensus 303 ---------~~~~i~v~d~G~~~~~~-------------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~ 352 (361)
T PRK13559 303 ---------AGFRIDWQEQGGPTPPK-------------------LAKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLL 352 (361)
T ss_pred ---------CeEEEEEECCCCCCCCC-------------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEE
Confidence 13899999999998764 45789999999999986 9999999997 46999
Q ss_pred EEEEEEec
Q 007434 579 AIFIVKLG 586 (604)
Q Consensus 579 ~~~~lp~~ 586 (604)
|++++|+.
T Consensus 353 ~~l~~P~~ 360 (361)
T PRK13559 353 ARIEIPSR 360 (361)
T ss_pred EEEEEeCC
Confidence 99999964
No 51
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-18 Score=173.99 Aligned_cols=195 Identities=23% Similarity=0.338 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQ--ETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l 419 (604)
+++.++++.+|+.+.+-|+++....+... .+...++.++.++.+.+. +++.+++++.... .+.+...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~---~~e~l~evR~~v~------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKL---LREALQEVRALVR------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH------hcCCchhhc
Confidence 78889999999999999999987222222 223334455545444443 3344444444433 122223333
Q ss_pred HHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCC
Q 007434 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
..+...+...........++.+........+.+....+..+++++++.++|++||+++.++.|++...++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33444444444444455666666665433233444567899999999999999999999999999988775
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~ 579 (604)
+.++|.|||+|++++. . +.|+||..+|++++.+||++.+.|. +|+||++
T Consensus 311 -----------l~l~V~DnG~Gf~~~~------------------~-~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i 359 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDK------------------E-GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTV 359 (365)
T ss_pred -----------EEEEEEECCcCCCccc------------------c-CCCcchhhHHHHHHHcCCEEEEEec-CCCceEE
Confidence 9999999999998863 1 2789999999999999999999999 8999999
Q ss_pred EEEEEe
Q 007434 580 IFIVKL 585 (604)
Q Consensus 580 ~~~lp~ 585 (604)
.+++|+
T Consensus 360 ~i~lPl 365 (365)
T COG4585 360 TITLPL 365 (365)
T ss_pred EEecCC
Confidence 999995
No 52
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.83 E-value=3.5e-20 Score=154.40 Aligned_cols=109 Identities=37% Similarity=0.577 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhc
Q 007434 455 GDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTK 533 (604)
Q Consensus 455 ~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 533 (604)
+|+..+.+++.||+.||++|+++ +.|.|.+...++. +.|+|+|+|.||+++.++++|.+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~--------------------~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDDH--------------------LSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTE--------------------EEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCe--------------------EEEEEEeccccccccccccchhh
Confidence 58999999999999999999975 7899998887764 99999999999999999999999
Q ss_pred cccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEe
Q 007434 534 FAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (604)
Q Consensus 534 f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~ 585 (604)
|++.+. .....+|.|+||++|+.+++.++|++++.+. +++||+|+|.+|+
T Consensus 61 ~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 61 FFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred cccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 998875 2233568999999999999999999999999 8999999999996
No 53
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.80 E-value=9.3e-16 Score=141.26 Aligned_cols=202 Identities=16% Similarity=0.221 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeee
Q 007434 338 ETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTF 417 (604)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~ 417 (604)
..+.+++.++++.+++.+.+.|-+....+++..+...++... .-..+.++++.+..-|..++.+|+ .+.+...
T Consensus 245 ~tQedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~L 317 (459)
T COG4564 245 DTQEDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISH------DLRPRAL 317 (459)
T ss_pred hchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhcc------ccChhhh
Confidence 344477888999999999999999999999887653322211 113466677888888888888876 3444444
Q ss_pred c---HHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccccccc
Q 007434 418 N---LHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD 494 (604)
Q Consensus 418 ~---l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~ 494 (604)
| |...++..++.++ +..++.+++..+.....+.......+++|.++.++|.=+|+.+.+|+|.+...++.
T Consensus 318 DDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~---- 390 (459)
T COG4564 318 DDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGDM---- 390 (459)
T ss_pred hhhhHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcc----
Confidence 4 3333444444443 67888888887655434444456899999999999999999888899998877765
Q ss_pred CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCC
Q 007434 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (604)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g 574 (604)
+++.|+|||+|++..... .+-+|+||.++++++...||++.++|. +
T Consensus 391 ----------------vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrERma~~GG~~~v~s~-p- 436 (459)
T COG4564 391 ----------------VQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRERMAHFGGELEVESS-P- 436 (459)
T ss_pred ----------------eEEEEecCCCCccchhhc----------------cCccccccccHHHHHHHhCceEEEEec-C-
Confidence 999999999999876421 234799999999999999999999998 4
Q ss_pred ceEEEEEEEEecC
Q 007434 575 KGCTAIFIVKLGI 587 (604)
Q Consensus 575 ~Gt~~~~~lp~~~ 587 (604)
+||.+++.+|...
T Consensus 437 ~GTel~v~Lp~~~ 449 (459)
T COG4564 437 QGTELTVLLPLDA 449 (459)
T ss_pred CCcEEEEEecchh
Confidence 4999999999753
No 54
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.73 E-value=2.8e-16 Score=166.87 Aligned_cols=147 Identities=24% Similarity=0.375 Sum_probs=116.2
Q ss_pred ecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHH---HHHHHHHHhhcC-------------CCCcE
Q 007434 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQT---LLNVVGNAVKFT-------------KEGNI 480 (604)
Q Consensus 417 ~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~i---l~nLl~NA~k~~-------------~~g~i 480 (604)
+.+..++...-..++..+...+.++++.+.... ...|+..+.++ +.||+.||++|+ +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 456666666666666666656666777765542 44599988888 569999999996 13668
Q ss_pred EEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh---------------------hhhhccccccc
Q 007434 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP---------------------NLFTKFAQNQA 539 (604)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~---------------------~if~~f~~~~~ 539 (604)
++++...++. +.|+|+|||.||+++.+. .+|.|+|+++.
T Consensus 420 ~l~a~~~~~~--------------------v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQGGN--------------------ICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEcCCE--------------------EEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 8888776554 899999999999986543 59999888865
Q ss_pred cccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCC
Q 007434 540 IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 540 ~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
.. +..+|.|+||.+||++++.|||+|+++|. +|+||+|++.+|+...
T Consensus 480 ~~-~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 480 QV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred cc-ccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 32 33579999999999999999999999999 8999999999998653
No 55
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.66 E-value=9.4e-14 Score=128.50 Aligned_cols=196 Identities=18% Similarity=0.181 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHH
Q 007434 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAV 422 (604)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~ 422 (604)
.+..+...++|.++|.|+.|.+++.+-.+...++ ..+.+......+..|...-+.+ ++ .....++...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L---~~-------s~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELL---YK-------SGDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHH---hc-------CCcceEcHHHH
Confidence 4567889999999999999999999877766554 3343333333333333222222 11 02346888899
Q ss_pred HHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC----CCCcEEEEEEEecccccccCCCC
Q 007434 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSRAP 498 (604)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~----~~g~i~i~~~~~~~~~~~~~~~~ 498 (604)
++.+...+.+....+.+.+....+++.. +-......|-.++.+|++||+||+ +.|.|.|++...++.+
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~-l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------- 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNVF-LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------- 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCceE-ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC-------
Confidence 8888888887654455556655554321 222245678999999999999996 3677888888876641
Q ss_pred CCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHH-HHcCCEEEEEecCCCceE
Q 007434 499 EFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV-NLMEGHIWIESEGLGKGC 577 (604)
Q Consensus 499 ~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv-~~~gG~i~i~s~~~g~Gt 577 (604)
...+.|.|||.|+|.+. .. ...|+|+.+++.++ ++.||.+...+. .||
T Consensus 159 -----------~~~l~v~deg~G~~~~~----------------~~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~---~Gt 207 (221)
T COG3920 159 -----------RFLLTVWDEGGGPPVEA----------------PL-SRGGFGLQLVERLVPEQLGGELEDERP---DGT 207 (221)
T ss_pred -----------eEEEEEEECCCCCCCCC----------------CC-CCCCcHHHHHHHHHHHHcCCeEEEEcC---CCE
Confidence 27899999999998763 11 46799999999999 899999998876 399
Q ss_pred EEEEEEEecCC
Q 007434 578 TAIFIVKLGIP 588 (604)
Q Consensus 578 ~~~~~lp~~~~ 588 (604)
+|++.+|....
T Consensus 208 ~~~i~~~~~~~ 218 (221)
T COG3920 208 EFRLRFPLSEA 218 (221)
T ss_pred EEEEEEecccc
Confidence 99999998653
No 56
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.62 E-value=2e-14 Score=153.46 Aligned_cols=147 Identities=24% Similarity=0.379 Sum_probs=117.5
Q ss_pred eecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHH---HHHHHHHHhhcC-------------CCCc
Q 007434 416 TFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQT---LLNVVGNAVKFT-------------KEGN 479 (604)
Q Consensus 416 ~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~i---l~nLl~NA~k~~-------------~~g~ 479 (604)
.+.+..++...-..++.....-+-++++.+.+... .-|..-+.++ |.+|+.||++|+ +.|+
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~t---elDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDT---ELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCe---eehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 45666777666666666666666667777766642 2277766666 678999999996 3578
Q ss_pred EEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch------------------------hhhhhccc
Q 007434 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI------------------------PNLFTKFA 535 (604)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~ 535 (604)
|++++...++. +.|+|+|||.||+.+.+ .-||.|.|
T Consensus 466 I~L~A~~~gn~--------------------ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 466 ITLSAYHEGNN--------------------IVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEEcCCCe--------------------EEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 99999888776 99999999999975543 33899999
Q ss_pred cccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 536 QNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 536 ~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
+|.... ++-.|.|.||-+||+-++++||+|.++|+ +|+||+|++.||+..
T Consensus 526 STa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTL 575 (716)
T COG0643 526 STAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTL 575 (716)
T ss_pred Ccchhh-hcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHH
Confidence 988643 45689999999999999999999999999 999999999999864
No 57
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.57 E-value=4.5e-13 Score=139.86 Aligned_cols=190 Identities=19% Similarity=0.224 Sum_probs=125.5
Q ss_pred HHHHHHHHHHH-HhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHH
Q 007434 342 RARNDFLAVMN-HEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (604)
Q Consensus 342 ~~~~~l~~~i~-Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~ 420 (604)
.+...+.+.+. |++.|.|++|..++..- ..+.+.+++.++.++.|..-. ......++.
T Consensus 256 ~el~~lqsqi~pHfL~NtL~~I~~~~~~~------------------~~~~~~~~v~~l~~llR~~l~---~~~~~~~l~ 314 (456)
T COG2972 256 AELRALQSQINPHFLYNTLETIRMLAEED------------------DPEEAAKVVKALSKLLRYSLS---NLDNIVTLE 314 (456)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHHHHhh---CCCCeeeHH
Confidence 45566777776 99999999998876531 122233334444333331111 111245666
Q ss_pred HHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEEEecccccccC
Q 007434 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-----KEGNISITGFVAKSESLRDS 495 (604)
Q Consensus 421 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~-----~~g~i~i~~~~~~~~~~~~~ 495 (604)
.-+.-+.+++. ++..++..+++++.+.+.... +-..+..+++.|++||++|+ ++|.|.|.....+.
T Consensus 315 ~E~~~~~kyl~--iq~~r~~~~le~~~~i~~~~~-~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~------ 385 (456)
T COG2972 315 IELLLIEKYLE--IQKLRIGDRLEVPLPIDEELE-PLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD------ 385 (456)
T ss_pred HHHHHHHHHHH--HHHhccCcceEEEeccCcccc-cccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC------
Confidence 66666666666 344444433333333222121 22346778999999999997 34567777776644
Q ss_pred CCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCC-cchhHHHHHHHHHHcCCE--EEEEecC
Q 007434 496 RAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSG-SGLGLAICKRFVNLMEGH--IWIESEG 572 (604)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g-~GlGL~i~~~iv~~~gG~--i~i~s~~ 572 (604)
.+.++|+|||+||+++....+... .++ +|+||..++++++.+.|. +.++|.
T Consensus 386 --------------~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~- 439 (456)
T COG2972 386 --------------VIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQ- 439 (456)
T ss_pred --------------EEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeec-
Confidence 399999999999999876655331 222 599999999999999888 689999
Q ss_pred CCceEEEEEEEEecC
Q 007434 573 LGKGCTAIFIVKLGI 587 (604)
Q Consensus 573 ~g~Gt~~~~~lp~~~ 587 (604)
+++||++.+.+|...
T Consensus 440 ~~~gt~v~~~~~~~~ 454 (456)
T COG2972 440 PGKGTFVQIIIPKRE 454 (456)
T ss_pred CCCcEEEEEEeehhh
Confidence 899999999999754
No 58
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.51 E-value=3.1e-13 Score=112.21 Aligned_cols=110 Identities=40% Similarity=0.650 Sum_probs=93.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhc
Q 007434 455 GDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTK 533 (604)
Q Consensus 455 ~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 533 (604)
+|...+.+++.|++.||++|+.. +.+.|.+...+.. +.+.|.|+|.|++++...++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~--------------------~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDH--------------------LEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCE--------------------EEEEEEeCCCCCCHHHHHHHhcC
Confidence 36788999999999999999885 6788887766553 89999999999999999999999
Q ss_pred cccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 534 FAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 534 f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
++..+. ......+.|+||++|+.+++.++|++.+.+. ++.|++|++.+|+.
T Consensus 61 ~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 61 FFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred eEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 876552 1122457899999999999999999999987 78899999999963
No 59
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.49 E-value=2.1e-13 Score=139.83 Aligned_cols=116 Identities=23% Similarity=0.398 Sum_probs=90.5
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh
Q 007434 454 VGDEKRLMQTLLNVVGNAVKFTKE-G---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN 529 (604)
Q Consensus 454 ~~d~~~l~~il~nLl~NA~k~~~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 529 (604)
..+...|.+++.||++||++|++. | .|.|.+...+.. ...+.|+|+|||+||+++.+++
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~ 93 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPK 93 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHH
Confidence 345688999999999999999864 3 466666543211 1138899999999999999999
Q ss_pred hhhccccccccc--cCCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceE-EEEEEEEecC
Q 007434 530 LFTKFAQNQAIA--LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGC-TAIFIVKLGI 587 (604)
Q Consensus 530 if~~f~~~~~~~--~~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt-~~~~~lp~~~ 587 (604)
+|++|+.+.... ....++.|+||++|+.+++.|+|. +++.|. +++|+ .|+|.+|+..
T Consensus 94 iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~ 154 (535)
T PRK04184 94 VFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDT 154 (535)
T ss_pred HhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecc
Confidence 999986543321 123457899999999999999987 999998 77787 8899988764
No 60
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.45 E-value=2.4e-11 Score=133.55 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=141.7
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeecc--C--CCCc
Q 007434 129 LDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ--Q--NPVG 204 (604)
Q Consensus 129 l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~--~--~~~~ 204 (604)
.+++.+.+.++...++.+.++++.+.+..+++++++.+++.+.++++++.|+|+++|+++..+.+....+. . ...+
T Consensus 170 ~~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~ 249 (686)
T PRK15429 170 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 249 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhccccc
Confidence 33444445555566899999999999999999999999999999999999999999988877665433222 1 1223
Q ss_pred ccccCCChhHHHHhhcCCeEEeCCCCccccccc---cccccCCCceeEEEeccccccccccCCcccccccceEEEEEEec
Q 007434 205 YTVPIQLPVINQVFSSNHAVKISPNCPVARLRP---LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLP 281 (604)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~ 281 (604)
...+...+..++++++++|..+++...++.... .......+..+.+++| +..++.+.|++.+.
T Consensus 250 ~~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~v~GvL~l~ 315 (686)
T PRK15429 250 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP--------------LMSGDTMLGVLKLA 315 (686)
T ss_pred ccCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEe--------------EEECCEEEEEEEEe
Confidence 345556689999999999999977654443221 0011112334555555 66788899999888
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 282 SDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALD 331 (604)
Q Consensus 282 ~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~ 331 (604)
+.....|+++|+++++.+|+++|+|+++++.+++.++..+.+++.+..+.
T Consensus 316 ~~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~lt 365 (686)
T PRK15429 316 QCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALT 365 (686)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHH
Confidence 77789999999999999999999999999999998887777766554433
No 61
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.39 E-value=6.4e-11 Score=129.17 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC--CCCcccccCCChhHHHHhhc
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ--NPVGYTVPIQLPVINQVFSS 220 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~ 220 (604)
+..|+++++.+.++.|++++++.+++.+.+.+++++|.||+.|.++..+....+.+.. .......+.+.+.+++++.+
T Consensus 2 L~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~t 81 (748)
T PRK11061 2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81 (748)
T ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhcc
Confidence 4568999999999999999999999999999999999999999988877666665542 22234567788999999999
Q ss_pred CCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHH
Q 007434 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la 300 (604)
++++.++|...++++.........+..+.+++| +..++.++|++.+.+..++.|++++.+++..+|
T Consensus 82 g~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VP--------------L~~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA 147 (748)
T PRK11061 82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVP--------------IIYRRQLLGVLVVQQRELRQFDESEESFLVTLA 147 (748)
T ss_pred CceEEECCcccCcccccCccccCccceEEEEEE--------------EeeCCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 999999999998888543332344566666776 456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007434 301 DQVAVALSHAAILEES 316 (604)
Q Consensus 301 ~~~a~al~~a~l~~~~ 316 (604)
.+++++++|+++.+..
T Consensus 148 ~~aAiAL~na~l~~~~ 163 (748)
T PRK11061 148 TQLAAILSQSQLTALF 163 (748)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999987665
No 62
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.34 E-value=1.1e-11 Score=107.19 Aligned_cols=97 Identities=21% Similarity=0.343 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...+.+++.|+++||++|+- ++.|.|.+...++. +.++|+|+|.|+++ .+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~--------------------~~i~I~D~G~gi~~--~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHE--------------------VYITVRDEGIGIEN--LEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCE--------------------EEEEEEEcCCCcCc--hhHhh
Confidence 556789999999999999862 35688887766554 89999999999973 67899
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEE
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIV 583 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~l 583 (604)
+||++.+. ..++.|+||+++++ +.+++++++. +++||+|+++.
T Consensus 94 ~~~~~~~~----~~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 94 EPLYTSKP----ELERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred CCCcccCC----CCCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 99987653 24588999998876 4579999998 78999998763
No 63
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.33 E-value=1.1e-11 Score=101.10 Aligned_cols=101 Identities=39% Similarity=0.639 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhcCC--CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccc
Q 007434 460 LMQTLLNVVGNAVKFTK--EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (604)
Q Consensus 460 l~~il~nLl~NA~k~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (604)
+.+++.+++.||++|+. .+.+.|.+...+.. +.+.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~--------------------~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDH--------------------LEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCE--------------------EEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 36789999999999987 46677777665443 899999999999999999998876111
Q ss_pred cccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEE
Q 007434 538 QAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIV 583 (604)
Q Consensus 538 ~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~l 583 (604)
. ......+.|+||++++++++.|||++++.+. .+.|++|.+.+
T Consensus 61 ~--~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 61 S--RSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred C--CCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 1 1123468899999999999999999999988 67899988763
No 64
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.32 E-value=1.7e-11 Score=128.23 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=86.8
Q ss_pred cCcEEEEEeCCCCCcc-eEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEEecccccccCCCCCCcccCCCCceEE
Q 007434 437 KKLLVALNLAPDLPEY-AVGDEKRLMQTLLNVVGNAVKFTKEG----NISITGFVAKSESLRDSRAPEFFPVPIENHFYL 511 (604)
Q Consensus 437 ~~i~~~~~~~~~~~~~-~~~d~~~l~~il~nLl~NA~k~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (604)
+.+.+..-+..+.+.. +..|...|.+++.||++||++|+..+ .|.|.+...+. ++
T Consensus 23 ~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~--------------------~v 82 (795)
T PRK14868 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD--------------------YY 82 (795)
T ss_pred cccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC--------------------EE
Confidence 4555555454443321 22356789999999999999998753 46666654333 38
Q ss_pred EEEEEecCCCCCcCchhhhhhccccccc-c---ccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 512 RVQVKDSGSGISPQDIPNLFTKFAQNQA-I---ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~---~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
.|.|+|||+||+++.++++|++|+++.. . ..+...|.|||+++++..+ .+||.+.+.|...+.+..+++.+++.
T Consensus 83 ~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 83 RLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred EEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 9999999999999999999999975432 1 1233456677777777666 47899999998323333343444443
No 65
>PRK03660 anti-sigma F factor; Provisional
Probab=99.31 E-value=2.6e-11 Score=106.23 Aligned_cols=103 Identities=23% Similarity=0.343 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...+.+++.|++.||++|+. ++.+.|++...++. +.++|+|+|.|+++ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~--------------------l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEE--------------------LEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCE--------------------EEEEEEEccCCCCh--HHHhh
Confidence 556789999999999999863 25577777655443 89999999999976 56889
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCC
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~ 589 (604)
++|++.+.. ..+.|+||+++++ +.+++++++. ++.||+|+++.++....
T Consensus 94 ~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~~ 142 (146)
T PRK03660 94 QPLYTTKPE----LERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKSK 142 (146)
T ss_pred CCCcccCCC----CCCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEecccc
Confidence 998876532 3578999998874 5678999998 78999999999987654
No 66
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.28 E-value=3.2e-11 Score=122.54 Aligned_cols=106 Identities=22% Similarity=0.386 Sum_probs=82.7
Q ss_pred eEccHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 453 AVGDEKRLMQTLLNVVGNAVKFTKE-G---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 453 ~~~d~~~l~~il~nLl~NA~k~~~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
+.++...|.+++.||++||++|+.. + .|.|.+...+.. .+.|+|+|||+||+++.++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~ 82 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIP 82 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHH
Confidence 3457889999999999999999863 3 466666543322 3789999999999999999
Q ss_pred hhhhccccccccc--cCCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceEEE
Q 007434 529 NLFTKFAQNQAIA--LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTA 579 (604)
Q Consensus 529 ~if~~f~~~~~~~--~~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt~~ 579 (604)
++|++|+.+.... ....++.|+||++++.+.+.|+|+ +++.|. .+ |..|
T Consensus 83 ~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~-~~-g~~~ 134 (488)
T TIGR01052 83 KVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISS-TG-GEIY 134 (488)
T ss_pred hhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEe-cC-CceE
Confidence 9999987665421 123467999999999999999999 999998 44 4444
No 67
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.27 E-value=3.1e-10 Score=121.22 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=129.0
Q ss_pred HhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee-ccCCCCcccccCCChhHHHHhhc
Q 007434 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL-RQQNPVGYTVPIQLPVINQVFSS 220 (604)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 220 (604)
++..|+++++.+....|++++++.+++.+.+.+++++|+|+++|.++......... ..........+...+.+++++.+
T Consensus 3 ~L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~ 82 (534)
T TIGR01817 3 QLAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVAT 82 (534)
T ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhc
Confidence 36789999999999999999999999999999999999999998887654433222 11122224556678999999999
Q ss_pred CCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCC-ccccchhhHHHHHHH
Q 007434 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDS-ARQWHVHELELVEVV 299 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~-~~~~~~~e~~ll~~l 299 (604)
++++.++|...++++.........+..+.+++| +..++.+.|++.+.+.. .+.|+++++++++.+
T Consensus 83 ~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VP--------------L~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~l 148 (534)
T TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVP--------------IKADSETIGVLAADRDFRSRERLEEEVRFLEMV 148 (534)
T ss_pred CCeEEecccccCchhhhccccccCCcceEEEEE--------------EcCCCEEEEEEEEEeccccccccHHHHHHHHHH
Confidence 999999999888877543333344566777777 56788899999998874 566899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007434 300 ADQVAVALSHAAILEESM 317 (604)
Q Consensus 300 a~~~a~al~~a~l~~~~~ 317 (604)
|.+++.+++++++++..+
T Consensus 149 A~~ia~aI~~~~~~~~~~ 166 (534)
T TIGR01817 149 ANLIGQTVRLHRLVAQRR 166 (534)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888776433
No 68
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=5.4e-11 Score=124.52 Aligned_cols=112 Identities=21% Similarity=0.343 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTKE-G---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...|.+++.||++||++++.. + .|.|.+...+.. ++.|+|.|||+||+++.++++|
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iF 93 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVF 93 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhh
Confidence 3445669999999999999863 2 577766554322 3889999999999999999999
Q ss_pred hcccccccccc--CCCCCcchhHHHHHHHHHHc-CCEEEEEecCCCceEEEEEEEEecC
Q 007434 532 TKFAQNQAIAL--RNSSGSGLGLAICKRFVNLM-EGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 532 ~~f~~~~~~~~--~~~~g~GlGL~i~~~iv~~~-gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
++|+++..-.. ...++.|+||+++..+.+.+ ||.+.+.|. ++.|++|.+.+|+..
T Consensus 94 erF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i 151 (659)
T PRK14867 94 GKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSV 151 (659)
T ss_pred ccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEe
Confidence 99877543211 23457899999999888775 666999998 799999999999866
No 69
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.19 E-value=2.8e-10 Score=100.78 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...+..++.|++.||++|+. .+.|.|++...++. +.+.|+|+|.|++++.....|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~--------------------l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDR--------------------LEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCE--------------------EEEEEEECCcCCChHHhcccc
Confidence 456678899999999999984 34588887766553 999999999999998888888
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCCCCCCC
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSN 595 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~~~~~~ 595 (604)
.|+++.+.. ....+.|+||.+++++++. +.+.+. .|+++++.-.+...+.++..+
T Consensus 99 ~p~~~~~~~--~~~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~~~~~~~ 153 (161)
T PRK04069 99 GPYDISKPI--EDLREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQVENNGE 153 (161)
T ss_pred CCCCCCCcc--cccCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchhccCccc
Confidence 888765543 2235679999999999975 566653 578899888877766555443
No 70
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=99.15 E-value=7.8e-09 Score=98.23 Aligned_cols=192 Identities=17% Similarity=0.229 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC----cceeeeeecHHHHHHHHHHHhhhhhhccC-cEEEEEeCCCC
Q 007434 375 TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS----LQLQIGTFNLHAVFREVLNLIKPIASVKK-LLVALNLAPDL 449 (604)
Q Consensus 375 ~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-i~~~~~~~~~~ 449 (604)
....+.+++....+--.++-++++-+.+....... +..--..+++.++|.++.+..+..+..+= -.-++.+++..
T Consensus 170 ~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~ 249 (414)
T KOG0787|consen 170 EKNIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHN 249 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcc
Confidence 34567788888877777777888755554411111 01111257899999999988776555431 11223333332
Q ss_pred CcceE-ccHHHHHHHHHHHHHHHhhcC-----CCCc----EEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecC
Q 007434 450 PEYAV-GDEKRLMQTLLNVVGNAVKFT-----KEGN----ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSG 519 (604)
Q Consensus 450 ~~~~~-~d~~~l~~il~nLl~NA~k~~-----~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G 519 (604)
..... .-+..|..++-+|+.||++++ ..+. |.|.+...++. +.|.|+|.|
T Consensus 250 a~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrG 309 (414)
T KOG0787|consen 250 ALSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRG 309 (414)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCC
Confidence 21111 367899999999999999975 2232 66665544443 889999999
Q ss_pred CCCCcCchhhhhhccccccccccCCC------CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 520 SGISPQDIPNLFTKFAQNQAIALRNS------SGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 520 ~Gi~~~~~~~if~~f~~~~~~~~~~~------~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
-|++.+..+++|+-.|+|........ .|.|.||.|+|.-++..||.+.+.|- +|-||-+.+.+....
T Consensus 310 GGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 310 GGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKALS 382 (414)
T ss_pred CCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccCC
Confidence 99999999999999888776533222 38899999999999999999999999 899999999987543
No 71
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=99.11 E-value=2e-09 Score=92.08 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccc
Q 007434 158 DRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRP 237 (604)
Q Consensus 158 ~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~ 237 (604)
|++++++.+++.+.+.++++++++|+.|+++..+....+.+........++...+.+.++++++++...++......
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERDF--- 77 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-TT---
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEecccccccC---
Confidence 67899999999999999999999999999888887777764443333466788999999999999988766443221
Q ss_pred cccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHH
Q 007434 238 LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSH 309 (604)
Q Consensus 238 ~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~ 309 (604)
.+..+.+.+| +..++.+.|++.+.....+.|++.++++++.+|++++++|+|
T Consensus 78 ------~~~~s~~~vP--------------l~~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 78 ------LGIRSLLVVP--------------LRSRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp ------TTTCEEEEEE--------------EEETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred ------CCCCEEEEEE--------------EeECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2234445555 666668999999999888999999999999999999999985
No 72
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.06 E-value=1.6e-09 Score=80.79 Aligned_cols=65 Identities=43% Similarity=0.755 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQE-TELTPEQ-RLMVETILKSSNLLATLINDVLDLSRLEDG 408 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~l~~~~~~~~~ 408 (604)
+++|++.++||+||||++|.++++++.+ ...+++. +++++.+..+++++..++++++++++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5789999999999999999999999999 7777776 999999999999999999999999998754
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=99.03 E-value=4.3e-09 Score=92.75 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhh
Q 007434 457 EKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (604)
Q Consensus 457 ~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 532 (604)
...+..++.+++.||++|+- ++.|.|.+...++. +.+.|+|+|.|++++.+...|.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~--------------------l~i~V~D~G~gfd~~~~~~~~~ 99 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDR--------------------LEIIVSDQGDSFDMDTFKQSLG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCE--------------------EEEEEEEcccccCchhhccccC
Confidence 34578899999999999973 35688888776554 9999999999999988888787
Q ss_pred ccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCCCCCC
Q 007434 533 KFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDS 594 (604)
Q Consensus 533 ~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~~~~~ 594 (604)
++...... ....+.|+||++++++++ ++.+.+. +|+++++...+...+.....
T Consensus 100 ~~~~~~~~--~~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~~~~~~ 152 (159)
T TIGR01924 100 PYDGSEPI--DDLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQVDNNV 152 (159)
T ss_pred CCCCCCCc--ccCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEcccccccCC
Confidence 76554432 224567999999999987 5667664 46888888777766655544
No 74
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=99.02 E-value=3.3e-09 Score=93.87 Aligned_cols=136 Identities=23% Similarity=0.300 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCC--CcccccCCChhHHHHhhcCCeEEeCCCCccccc
Q 007434 158 DRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNP--VGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (604)
Q Consensus 158 ~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~ 235 (604)
|++++++.+++.+.+.+++++|+++++|.++.............. .....+...+.+..++.+++++.+++...+++.
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 678999999999999999999999999999988866666554432 334555567889999999999999998888876
Q ss_pred ccccccc---------------CCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc-cccchhhHHHHHHH
Q 007434 236 RPLAGKY---------------MPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA-RQWHVHELELVEVV 299 (604)
Q Consensus 236 ~~~~~~~---------------~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ll~~l 299 (604)
....... ..+..+.+++| +..++.++|++.+.+..+ +.|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVP--------------IISGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEE--------------EEETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEee--------------eecccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 6432211 34566666666 777889999999999888 99999999999999
Q ss_pred HHHHHHHH
Q 007434 300 ADQVAVAL 307 (604)
Q Consensus 300 a~~~a~al 307 (604)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999986
No 75
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.00 E-value=2.9e-08 Score=105.16 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC-CCCcccccCCC-hhHHHHhhc
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ-NPVGYTVPIQL-PVINQVFSS 220 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~v~~~ 220 (604)
+..++++++.|.+++|.+++++.+++.+.+.++++.+++.+++.+ .+....+.+.. .......+.++ |.+..++++
T Consensus 3 ~~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~--~l~~~as~gl~~~~~~~~~~~geGP~l~av~~~ 80 (509)
T PRK05022 3 LDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGD--QLVPLAIDGLSPDVLGRRFALEEHPRLEAILRA 80 (509)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC--cEEEEEEcCCChHhhCCccCCCcchHHHHHHhc
Confidence 467899999999999999999999999999999999999988764 33333333322 12222444444 477888888
Q ss_pred CCeEEeCCCCcccccc-ccc--cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHH
Q 007434 221 NHAVKISPNCPVARLR-PLA--GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVE 297 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~-~~~--~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (604)
+.++.+++....+.+. ... .....|..+.+++| +..++.+.|++.++...+..|++++.+++.
T Consensus 81 g~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vP--------------L~~~~~~~GvL~l~~~~~~~f~~~~~~~l~ 146 (509)
T PRK05022 81 GDPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLP--------------LFVDGRLIGALTLDALDPGQFDAFSDEELR 146 (509)
T ss_pred CCeEEEecCCCCCcccccccccccccCCcceEEEEE--------------EEECCEEEEEEEEeeCCCCcCCHHHHHHHH
Confidence 9999998765544421 111 12233556777777 667888999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 298 VVADQVAVALSHAAILEESMRARDLLMQQ 326 (604)
Q Consensus 298 ~la~~~a~al~~a~l~~~~~~~~~~l~~~ 326 (604)
.+|.+++.|+.+++.+++.++..+++...
T Consensus 147 ~~a~~~a~Al~~a~~~~~l~~~~~~~~~~ 175 (509)
T PRK05022 147 ALAALAAATLRNALLIEQLESQAELPQDV 175 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666554443
No 76
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.94 E-value=3.3e-08 Score=108.90 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC-CCc--ccccCCChhHHHHhh
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN-PVG--YTVPIQLPVINQVFS 219 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~ 219 (604)
...|.++++.+.+..|++++++.+...+.+++.++++.|.++|+....+.+ +....+. +.. .......+..+++++
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 467899999999999999999999999999999999999999988766654 3332221 111 123346778899999
Q ss_pred cCCeEEeCCCCccccccccccc-cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHH
Q 007434 220 SNHAVKISPNCPVARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEV 298 (604)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~ 298 (604)
+++|...++.....+++..... ..+.... +..+| +...+.+.|.+++....+..|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-------------~lgvP-l~~~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGH-------------YCLMP-LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccc-------------eEEec-eeeCCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988875544444322111 1111222 33345 6668888888888887789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 299 VADQVAVALSHAAILEESMRARDLLMQQNI 328 (604)
Q Consensus 299 la~~~a~al~~a~l~~~~~~~~~~l~~~~~ 328 (604)
+|.++++|+++++++++.++..+.|++...
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~ 182 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERD 182 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999998887777654433
No 77
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.85 E-value=1.1e-07 Score=82.51 Aligned_cols=144 Identities=23% Similarity=0.250 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHhhhhhcCCeeEEEeecC-CCCeEEEEEeeccC-CCCcccccCCChhHHHHhhcCCeEEeCCCCccccc
Q 007434 158 DRHTILKTTLVELGRTLALEECALWMPTR-TGLELQLSYTLRQQ-NPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (604)
Q Consensus 158 ~~~~il~~~~~~~~~~l~~~~~~i~l~d~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~ 235 (604)
|++++++.+++.+.+.++++++++++.+. ...........+.. .......+...+.+.++++++.++.+++....+..
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 46788999999999999999999999987 34443333332222 22334566667889999999999998876544421
Q ss_pred cccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC-CccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007434 236 RPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD-SARQWHVHELELVEVVADQVAVALSHAAILE 314 (604)
Q Consensus 236 ~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~-~~~~~~~~e~~ll~~la~~~a~al~~a~l~~ 314 (604)
.........+..+.+++| +..++.+.|++.+... .++.|+++++.+++.++++++.++++.++++
T Consensus 81 ~~~~~~~~~~~~s~~~~P--------------l~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVP--------------LVADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEee--------------eeecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111234444445 5557788888888887 7899999999999999999999999988776
Q ss_pred H
Q 007434 315 E 315 (604)
Q Consensus 315 ~ 315 (604)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 5
No 78
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.83 E-value=3.8e-08 Score=86.29 Aligned_cols=136 Identities=22% Similarity=0.258 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCccc--ccCCC--hh-------HHHHhhcCCeEE
Q 007434 157 LDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYT--VPIQL--PV-------INQVFSSNHAVK 225 (604)
Q Consensus 157 ~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-------~~~v~~~~~~~~ 225 (604)
.+++++++.+++.+.+..+++.++|++.|.++......+........... .+... .. ...++++++++.
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 36788999999999999999999999998887555555544443222222 22221 11 122389999999
Q ss_pred eCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHH
Q 007434 226 ISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAV 305 (604)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~ 305 (604)
++ ...............+..+.+++| +..++.++|++.+.+..++.|+++++++++.+|++++.
T Consensus 82 ~~--~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~ 145 (148)
T PF13185_consen 82 IN--DDDSSFPPWELARHPGIRSILCVP--------------LRSGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIAI 145 (148)
T ss_dssp ES--CCCGGGSTTHHHCCTT-SEEEEEE--------------EEETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHHH
T ss_pred Ee--CccccccchhhhccccCCEEEEEE--------------EeECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99 111111212233445667777777 66777999999999999999999999999999999999
Q ss_pred HHH
Q 007434 306 ALS 308 (604)
Q Consensus 306 al~ 308 (604)
||+
T Consensus 146 aie 148 (148)
T PF13185_consen 146 AIE 148 (148)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 79
>PF14501 HATPase_c_5: GHKL domain
Probab=98.80 E-value=8.8e-08 Score=77.43 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...+-.+|.||++||++++. ...|.|.+...++. +.|.|++.-.+ +. +.++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~--------------------~~i~i~N~~~~---~~-~~~~ 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENGF--------------------LVIIIENSCEK---EI-EKLE 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCE--------------------EEEEEEECCCC---cc-cccc
Confidence 456788999999999999863 33478887776654 89999987444 11 2222
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEE
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp 584 (604)
+.+ .+.+++|+||.++++++++++|++.++.+ +.=.++.+.||
T Consensus 58 ----~~~----~~~~~~G~GL~~v~~i~~~y~g~~~~~~~--~~~f~~~i~ip 100 (100)
T PF14501_consen 58 ----SSS----SKKKGHGIGLKNVKKILEKYNGSLSIESE--DGIFTVKIVIP 100 (100)
T ss_pred ----ccc----cCCCCCCcCHHHHHHHHHHCCCEEEEEEE--CCEEEEEEEEC
Confidence 111 23678999999999999999999999887 33455666655
No 80
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.63 E-value=5.6e-06 Score=83.50 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=124.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC--CCCcccccCCChhHHHHhhcCC
Q 007434 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ--NPVGYTVPIQLPVINQVFSSNH 222 (604)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~ 222 (604)
.|+++-+...+..++.+-++.+++.+...+.++.|.+|+.+.++..+++-...+.. ...-.....+.+.++.+.++.+
T Consensus 4 ~Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~ae 83 (756)
T COG3605 4 RLRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAE 83 (756)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccC
Confidence 37777788899999999999999999999999999999999998777665554443 3333345558899999999999
Q ss_pred eEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHH
Q 007434 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQ 302 (604)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~ 302 (604)
|.-..|...+|.+.=..........+ .++.| +...++..||+++..+..|.|++.|.++|.++|.|
T Consensus 84 PlNLsdAqsHPsF~Y~petgEE~Y~s-------------FLGvP-Ii~~~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~ 149 (756)
T COG3605 84 PLNLADAQSHPSFKYLPETGEERYHS-------------FLGVP-IIRRGRLLGVLVVQQRELRQYDEDEVEFLVTLAMQ 149 (756)
T ss_pred CCChhhhhhCCccccccccchHHHHH-------------hhccc-eeecCceeEEEEEecccccccchHHHHHHHHHHHH
Confidence 99999999988887322222221222 24445 55677889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007434 303 VAVALSHAAIL 313 (604)
Q Consensus 303 ~a~al~~a~l~ 313 (604)
+|..+.++++.
T Consensus 150 lA~iva~~el~ 160 (756)
T COG3605 150 LAEIVAQSQLT 160 (756)
T ss_pred HHHHHHhhhhh
Confidence 99999988876
No 81
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.56 E-value=5e-07 Score=88.33 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCC-CC---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK-EG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~-~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
....|.+++.+|++|+++++. .| .|.|.+...+.. ++.+.|.|||+|||.+.++++|
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d-------------------~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKD-------------------HYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCc-------------------eEEEEEecCCCCCChhHhHHHH
Confidence 346699999999999999986 33 366666655433 5899999999999999999999
Q ss_pred hcccccccc-cc-CCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceEEEEEEEEecCC
Q 007434 532 TKFAQNQAI-AL-RNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 532 ~~f~~~~~~-~~-~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
..++-+..- .. ...+-.|+|.+-+--..+..-|+ +.|.|...+.++...+.+.+...
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~ 153 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQ 153 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCC
Confidence 876433321 11 12234688888887777777777 88888734557888887776544
No 82
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.51 E-value=8.3e-07 Score=75.27 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
....+..++.+++.||++|+.. +.|.|.+...++. +.++|+|+|.|+++.....-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~--------------------l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDR--------------------LRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCE--------------------EEEEEEECCCCCChhhccCcc
Confidence 4457888999999999999864 4577776666654 999999999999887543221
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEE
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~ 582 (604)
..-. ......|+||.+++++++.. .+ + .++|++++++
T Consensus 88 ~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~--~~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWEP-------DSLREGGRGLFLIRSLMDEV----DY-R--EDGGNTVTLR 124 (125)
T ss_pred cccC-------CCCCCCCcCHHHHHHHHcEE----EE-E--CCCeEEEEEE
Confidence 1000 12567899999999999765 45 3 3679988764
No 83
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-05 Score=79.57 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC--CCcccccCCChhHHHHhhc
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN--PVGYTVPIQLPVINQVFSS 220 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~ 220 (604)
...+.+++..+....+.+..+..+.+.+..+++++.+.+..+|.++.......+..... .........++....++.+
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 45788899999999999999999999999999999999999998874333333333321 1223556688999999999
Q ss_pred CCeEEe-CCCCcccccc-cc-ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHH
Q 007434 221 NHAVKI-SPNCPVARLR-PL-AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVE 297 (604)
Q Consensus 221 ~~~~~i-~~~~~~~~~~-~~-~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (604)
+.|+.+ +.++..+.-. .. ......+..+.+.+| +..++..+|++.+....+..|+..-.+.++
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~lr 178 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEELR 178 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHHH
Confidence 999999 3332222111 11 111112346666666 888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 298 VVADQVAVALSHAAILEESMRARDLLMQQNIALD 331 (604)
Q Consensus 298 ~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~ 331 (604)
.++..++.+..++.+.++....++.+++++.+++
T Consensus 179 ~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~ 212 (550)
T COG3604 179 FLAALAALAVANALLHRELSSLKERLEEENLALE 212 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999998777776665544443
No 84
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=3e-06 Score=83.91 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccc
Q 007434 458 KRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (604)
..+.+++.||+.||+++.. ..|.|.+... . ...|+|.|||.||+++.++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~~--~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEEG--G-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEeC--C-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4578999999999999754 5677776532 1 1569999999999999999999999998
Q ss_pred ccccc------CCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 538 QAIAL------RNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 538 ~~~~~------~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
+.... ...+-.|.||+....+ +++.+.|.
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~ 113 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALASISSV-----SRLTITTK 113 (312)
T ss_pred CCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEe
Confidence 75421 1123357777655444 26777775
No 85
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.29 E-value=1.2e-05 Score=69.06 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTKE-----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 530 (604)
+-..+..++.+++.||++|+.+ |.|.|.+...++. +.+.|.|.|+|+ +..+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~--------------------~~i~i~D~G~~~--~~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK--------------------LEIRIWDQGPGI--EDLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe--------------------EEEEEEeCCCCC--CCHHHh
Confidence 6678899999999999999743 7788888887765 999999999665 446677
Q ss_pred hhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 531 FTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 531 f~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
+.|.+.+.. .....|+||.++++++ .++.+++.
T Consensus 95 ~~~~~~~~~----~~~~~G~Gl~l~~~~~----D~~~~~~~ 127 (146)
T COG2172 95 LGPGDTTAE----GLQEGGLGLFLAKRLM----DEFSYERS 127 (146)
T ss_pred cCCCCCCCc----ccccccccHHHHhhhh----eeEEEEec
Confidence 777755542 2445699999999876 56788866
No 86
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.27 E-value=6.1e-06 Score=60.60 Aligned_cols=63 Identities=54% Similarity=0.803 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLE 406 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~ 406 (604)
++++.+.++||++|||+.|.++++.+.+...+++..+.++.+...++++..++++++.+++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999888755556668889999999999999999999998854
No 87
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=98.16 E-value=3e-06 Score=75.83 Aligned_cols=159 Identities=23% Similarity=0.258 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCC--eEEEEEe-ec--cC-CCCcccc-cCCChhHH
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGL--ELQLSYT-LR--QQ-NPVGYTV-PIQLPVIN 215 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~--~~~~~~~-~~--~~-~~~~~~~-~~~~~~~~ 215 (604)
...++++++.+....+.+++++.+++.+.+.++++++.++..+.+.. ...+... .. .. ....... +.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T COG2203 3 EALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIG 82 (175)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhh
Confidence 35678888999999999999999999999999999999998887753 1100000 00 00 0000011 22223566
Q ss_pred HHhhcCCeEEeCCCCccccccccccccCCC-ceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc-ccchhhH
Q 007434 216 QVFSSNHAVKISPNCPVARLRPLAGKYMPG-EVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR-QWHVHEL 293 (604)
Q Consensus 216 ~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~-~~~~~e~ 293 (604)
++...+.+..+++...+++........... ..+ ....| +..++...|++.+....+. .|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------~l~vP-l~~~~~~~G~l~~~~~~~~~~~~~~e~ 148 (175)
T COG2203 83 IALREGRPVVVEDILQDPRFRDNPLVLLEPPIRS-------------YLGVP-LIAQGELLGLLCVHDSEPRRQWSEEEL 148 (175)
T ss_pred hhhcCCceEEeeccccCcccccCHHHHHHHHHHH-------------heeee-eeECCEeeEEeeeeccCCCCCCCHHHH
Confidence 777888888888887777665311111111 222 34445 4445566666666666555 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007434 294 ELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 294 ~ll~~la~~~a~al~~a~l~~~ 315 (604)
.+++.++.+++.|+++++++++
T Consensus 149 ~ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 149 ELLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877
No 88
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.12 E-value=0.00018 Score=80.00 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=101.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeecc-CCCCcccccC-CChhHHHHhhc--
Q 007434 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ-QNPVGYTVPI-QLPVINQVFSS-- 220 (604)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~v~~~-- 220 (604)
.+..++..+....+.+++.+.+++.+.+..+.+.++|+.++.+...+......+. ....+..... .......++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 4567788888999999999999999999999999999999888776643332222 1111111111 12234455555
Q ss_pred CCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHH
Q 007434 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la 300 (604)
+.+..+.+.......... .| .+.+++| +..++.+.|+|.++...++.|+++++.+|+.+|
T Consensus 369 ~~~~~~~~~~~~~~~~~~-----~~-~s~~~vP--------------L~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSGTV-----DG-SAVAAVP--------------LVYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccccc-----CC-ceEEEEe--------------EEECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 666666543322111110 11 1555555 778999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007434 301 DQVAVALSHAA 311 (604)
Q Consensus 301 ~~~a~al~~a~ 311 (604)
.+++.+|++.+
T Consensus 429 ~~ia~aI~~~~ 439 (665)
T PRK13558 429 RAVGAAINALE 439 (665)
T ss_pred HHHHHHHHHHH
Confidence 99999997544
No 89
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.92 E-value=7.4e-05 Score=54.37 Aligned_cols=62 Identities=47% Similarity=0.622 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007434 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSR 404 (604)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (604)
.++.+...++||++||++.+.+.++.+.+.. ..++....++.+...+.++..++++++.+++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999887643 3566778889999999999999999998864
No 90
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.84 E-value=8.5e-05 Score=80.35 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
.+..++.+|++||++++ +..|.|.+... + ...|+|+|||.||+++.++.+|.++.++|
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~~-g--------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEEG-G--------------------LKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEeC-C--------------------eEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 46788999999999975 66788887432 2 26899999999999999999999998877
Q ss_pred cccc------CCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 539 AIAL------RNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 539 ~~~~------~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
-... ...+=.|-||+.+-.+ .++.+.+.
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~ 113 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSR 113 (617)
T ss_pred CCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEe
Confidence 5321 1122356677655543 36777775
No 91
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=97.80 E-value=1.2e-05 Score=89.18 Aligned_cols=329 Identities=34% Similarity=0.409 Sum_probs=232.5
Q ss_pred cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 007434 242 YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALS--HAAILEESMRA 319 (604)
Q Consensus 242 ~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~--~a~l~~~~~~~ 319 (604)
...+...+.++++........-.++..........++......++.|..++..+-+.++++++.++. ++--.......
T Consensus 282 ~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~ 361 (786)
T KOG0519|consen 282 SGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIA 361 (786)
T ss_pred cccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEe
Confidence 4556777788888877777666677788888888889888888999999999999999999999998 66555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 320 RDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQ-ETELTPEQRLMVETILKSSNLLATLIND 398 (604)
Q Consensus 320 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ 398 (604)
++++...+..+..++++..........++....|..++|.+.+.+....+. .....++..-..+...........+++.
T Consensus 362 ~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~ 441 (786)
T KOG0519|consen 362 REELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQA 441 (786)
T ss_pred ehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhcc
Confidence 666666666666666666666666677788888999999999988877443 3333333333344455566667777777
Q ss_pred HHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhh--cCC
Q 007434 399 VLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVK--FTK 476 (604)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k--~~~ 476 (604)
-.+.++...+..........+..++.............+.+.+.+.+..+.+..+.++..+..|++.+...++.+ +++
T Consensus 442 ~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 521 (786)
T KOG0519|consen 442 DPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTK 521 (786)
T ss_pred ccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccc
Confidence 777777666665556667789999999998888777677777887777777777777888889999999999888 555
Q ss_pred CCc-EEEEEEEe--ccccccc--CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchh
Q 007434 477 EGN-ISITGFVA--KSESLRD--SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLG 551 (604)
Q Consensus 477 ~g~-i~i~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlG 551 (604)
.++ ..+.+... +...+.. ...+-+.......+-.+.+.+.++..+.........+..+.+..........+.+++
T Consensus 522 ~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 601 (786)
T KOG0519|consen 522 LGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLS 601 (786)
T ss_pred cCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccc
Confidence 442 22222222 2211100 011111111112222578899999999988888777777766555433334678899
Q ss_pred HHHHHHHHHHcCCEEEEEe
Q 007434 552 LAICKRFVNLMEGHIWIES 570 (604)
Q Consensus 552 L~i~~~iv~~~gG~i~i~s 570 (604)
++.|.+..+.++|.+++..
T Consensus 602 ~~~~~~~~~~~~~~~~~~~ 620 (786)
T KOG0519|consen 602 LALCPENSQLMEGNIGLVP 620 (786)
T ss_pred cccchhhHHhhhccccccc
Confidence 9999999999999988864
No 92
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.76 E-value=1.4e-05 Score=68.73 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccccc
Q 007434 461 MQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540 (604)
Q Consensus 461 ~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 540 (604)
..++.+|+.||+++. ...|.|.+...+... ..|.|.|||.||+.+.+...|....+.+..
T Consensus 4 ~~al~ElI~Ns~DA~-a~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~ 63 (137)
T PF13589_consen 4 EDALRELIDNSIDAG-ATNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKKS 63 (137)
T ss_dssp THHHHHHHHHHHHHH-HHHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHHH
T ss_pred HHHHHHHHHHHHHcc-CCEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCCc
Confidence 468899999999964 345888887764221 479999999999999999988777665541
Q ss_pred --ccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 541 --ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 541 --~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
.....+..|+|+..+ +-.++.++.+.|...+....+.+..+..
T Consensus 64 ~~~~~~~G~~G~G~k~A---~~~~~~~~~v~S~~~~~~~~~~~~~~~~ 108 (137)
T PF13589_consen 64 EKDRQSIGRFGIGLKLA---IFSLGDRVEVISKTNGESFTYTIDYDWI 108 (137)
T ss_dssp HHHGGGGGGGTSGCGGG---GGGTEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred hhhhhcCCCcceEHHHH---HHHhcCEEEEEEEECCCCcEEEEEEecc
Confidence 112234567773211 1246788999998556666777777753
No 93
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=97.69 E-value=0.0033 Score=53.30 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=86.5
Q ss_pred HHHHHHHhhhhhc-CCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccc
Q 007434 163 LKTTLVELGRTLA-LEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGK 241 (604)
Q Consensus 163 l~~~~~~~~~~l~-~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~ 241 (604)
+..+...+.+.++ .+.+++|+.+ +..+.+..-.+ ...-..+|.+.++++.+.++++.+.++|....+..-.
T Consensus 37 lan~sall~~~l~~~nW~GFYl~~--~~~LvLgPFqG--~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~ghia---- 108 (163)
T COG1956 37 LANASALLKERLPDVNWVGFYLLE--GDELVLGPFQG--KVACVRIPFGKGVCGTAAATGETVRVDDVHAFPGHIA---- 108 (163)
T ss_pred HHHHHHHHHhhccCCceEEEEEec--CCeEEEecccC--CcceEEeccCcchhHHHHhcCCeEEecccccCCCccc----
Confidence 3334444444444 8899999998 33444332222 2344568889999999999999999999876554321
Q ss_pred cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHH
Q 007434 242 YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVA 306 (604)
Q Consensus 242 ~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~a 306 (604)
.-+...+.+.+| +..++.++|++-+.+.....|+++|...|+.++..++-.
T Consensus 109 CD~as~SEIVvP--------------i~~~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 109 CDAASNSEIVVP--------------IFKDGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred cccccCceEEEE--------------EEECCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112234455556 666999999999999999999999999999999876543
No 94
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=97.27 E-value=0.0059 Score=54.48 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=88.1
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccc
Q 007434 156 TLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (604)
Q Consensus 156 ~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~ 235 (604)
..++.+..+.+++.+.+.+++ .++| ++..-.+++.+......... + .......++.+++.....+... +..
T Consensus 51 ~~~~~~~A~~~aeII~~~t~~-aVaI-----TDr~~ILA~~G~g~d~~~~~-~-is~~t~~~i~~gk~~~~~~~~~-~~i 121 (180)
T TIGR02851 51 IGELGDFAKEYAESLYQSLGH-IVLI-----TDRDTVIAVAGVSKKEYLNK-P-ISDELEDTMEERKTVILSDTKD-GPI 121 (180)
T ss_pred ccchHHHHHHHHHHHHHHhCC-EEEE-----ECCCcEEEEECCChhhcCCC-c-cCHHHHHHHHcCCEEEecCCcc-cee
Confidence 356778889999999999999 8888 55555666665554433333 5 7778899999999988875421 001
Q ss_pred cccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc--ccchhhHHHHHHHHHHHHHHHH
Q 007434 236 RPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR--QWHVHELELVEVVADQVAVALS 308 (604)
Q Consensus 236 ~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~--~~~~~e~~ll~~la~~~a~al~ 308 (604)
... ........+++.+| +..++.+.|.+.++ ...+ .+++.+.++...+|..++.+|+
T Consensus 122 ~c~-~~~~~~l~s~ii~P--------------l~~~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QLE 180 (180)
T TIGR02851 122 EII-DGQEFEYTSQVIAP--------------IIAEGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQME 180 (180)
T ss_pred ccc-cCCCCCcceEEEEE--------------EEECCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhhC
Confidence 100 00111134555555 66777889988888 6666 8999999999999998887653
No 95
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=97.20 E-value=0.021 Score=51.10 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=97.3
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEe------ec-CCCCeEEEEEeecc-CCC
Q 007434 131 REMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWM------PT-RTGLELQLSYTLRQ-QNP 202 (604)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l------~d-~~~~~~~~~~~~~~-~~~ 202 (604)
+++..+.+..+-++.+-+.+..|-+..++++....++.++..+++.+..+++. ++ .....+.+-.+.+. ...
T Consensus 9 rdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~ 88 (174)
T PF11849_consen 9 RDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESL 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhh
Confidence 45556666666788899999999999999999999999999999999877665 11 11122333333222 222
Q ss_pred Ccccc-cCC----ChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEE
Q 007434 203 VGYTV-PIQ----LPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMV 277 (604)
Q Consensus 203 ~~~~~-~~~----~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gv 277 (604)
.+... .+. ...+..++.+++...-++.... + +......-++
T Consensus 89 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~~l--------------------y--------------~~~~~g~~~~ 134 (174)
T PF11849_consen 89 IGQPLDDLLPPEIRAALQQALSSKRSIFEEDHFVL--------------------Y--------------FPSSSGRESL 134 (174)
T ss_pred cCCcccccCCHHHHHHHHHHHHcCCeEecCCeEEE--------------------E--------------EecCCCCEEE
Confidence 22221 112 2345666666665553332210 0 1122223344
Q ss_pred EEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 278 LMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESM 317 (604)
Q Consensus 278 l~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~ 317 (604)
+++... +.+++.|.++++.++.+++++++|..++++++
T Consensus 135 iyl~~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 135 IYLEGD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444 68999999999999999999999999998854
No 96
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.72 E-value=0.0061 Score=66.04 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh---
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~--- 529 (604)
+...+.+++.++++||++... ...|.|.+... . .|+|+|||+|||.+..+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~--g---------------------~I~V~DnG~GIp~~~h~~~ki 90 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINED--G---------------------SITVTDNGRGIPVDIHPKTGK 90 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCC--C---------------------cEEEEEeCccccCCccCCCCC
Confidence 456789999999999999443 34577776542 1 489999999999874432
Q ss_pred -----hhhccccccccc----cCCCCCcchhHHHHHHHHH
Q 007434 530 -----LFTKFAQNQAIA----LRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 530 -----if~~f~~~~~~~----~~~~~g~GlGL~i~~~iv~ 560 (604)
+|.....+..-. ....+-.|.|++.+..+-+
T Consensus 91 ~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 91 PAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred CchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 333221111000 0013346899988876654
No 97
>PRK05218 heat shock protein 90; Provisional
Probab=96.66 E-value=0.0034 Score=67.72 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.4
Q ss_pred EEEEEecCCCCCcCchhhhhhcc
Q 007434 512 RVQVKDSGSGISPQDIPNLFTKF 534 (604)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f 534 (604)
.|+|+|||.||+.+++...|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~i 96 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTI 96 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 49999999999999988866443
No 98
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.59 E-value=0.0043 Score=67.18 Aligned_cols=82 Identities=23% Similarity=0.371 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh---
Q 007434 456 DEKRLMQTLLNVVGNAVKFTKEG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~--- 529 (604)
+...+..++.++++||++...+| .|.|.+... . .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d--g---------------------~I~V~DnGrGIP~~~~~~~~~ 90 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD--G---------------------SVSVRDNGRGIPVGIHPEEGK 90 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC--C---------------------cEEEEEcCCCCCcccccccCC
Confidence 45678999999999999975433 466665532 1 489999999999998887
Q ss_pred -----hhhccccccccc----cCCCCCcchhHHHHHHHHH
Q 007434 530 -----LFTKFAQNQAIA----LRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 530 -----if~~f~~~~~~~----~~~~~g~GlGL~i~~~iv~ 560 (604)
+|.....+..-. ....+-.|.|++.+..+-+
T Consensus 91 ~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 91 SGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred cchheeeeeccccCccCCccccccCcccccchhhhhhhee
Confidence 776633322110 0112337999988876643
No 99
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.0021 Score=69.49 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
+..-|+.+|++||++++. .+|.|.+...+- -.|.|+|||.||++++++..+.++.|.|
T Consensus 23 rPaSVVKELVENSlDAGA-t~I~I~ve~gG~---------------------~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA-TRIDIEVEGGGL---------------------KLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC-CEEEEEEccCCc---------------------cEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 356788999999999854 456665543322 3599999999999999999999999988
Q ss_pred cc
Q 007434 539 AI 540 (604)
Q Consensus 539 ~~ 540 (604)
-.
T Consensus 81 I~ 82 (638)
T COG0323 81 IA 82 (638)
T ss_pred CC
Confidence 64
No 100
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=96.52 E-value=0.013 Score=55.04 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhhh----HHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee
Q 007434 122 LKNKAAELDREMGLIRT----QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL 197 (604)
Q Consensus 122 ~~~~~~~l~~~~~~~~~----~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~ 197 (604)
+++++++++++.+++.. .+.....+.++...+..+.+.+++.+.+...+++.++++.+.+++++..........
T Consensus 52 LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~~-- 129 (225)
T PF04340_consen 52 LRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSLT-- 129 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccchh--
Confidence 44455666665555433 344466678889999999999999999999999999999999998876543200000
Q ss_pred ccCCCCcccccCCChhHHHH----hhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccce
Q 007434 198 RQQNPVGYTVPIQLPVINQV----FSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRY 273 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~ 273 (604)
.. ..........+ +..+.+..-..... ....+-+.......+...+| +. .+.
T Consensus 130 -~~------~~~~~~~~~~~~~~~l~~~~p~~G~~~~~--~~~~lF~~~~~~v~S~Alip--------------L~-~~~ 185 (225)
T PF04340_consen 130 -DH------VWLSRDAFAQVFIDLLGLQQPYCGRLSEE--EAALLFGDEAAQVGSVALIP--------------LG-SGR 185 (225)
T ss_dssp -----------E-HHHHHHHHCCCHTT---CCCS--HH--HHHHHHHHCHCC-SEEEEEE--------------EE-SSS
T ss_pred -hc------ccccHHHHHHHHHHHhCCCCceeCCCCcc--hhHHhcCCCCccccchheee--------------cc-CCC
Confidence 00 00011111111 11111111100000 00000000011122222333 44 667
Q ss_pred EEEEEEecCCCccccch-hhHHHHHHHHHHHHHHHHH
Q 007434 274 ALMVLMLPSDSARQWHV-HELELVEVVADQVAVALSH 309 (604)
Q Consensus 274 ~~gvl~~~~~~~~~~~~-~e~~ll~~la~~~a~al~~ 309 (604)
..|++.+.+..+..|++ ....+|+.++..++.++++
T Consensus 186 ~~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~r 222 (225)
T PF04340_consen 186 PIGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALER 222 (225)
T ss_dssp EEEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGGG
T ss_pred ceEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHhc
Confidence 78999999998888886 5589999999999988764
No 101
>PRK14083 HSP90 family protein; Provisional
Probab=96.52 E-value=0.0013 Score=70.09 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCC---------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhh
Q 007434 462 QTLLNVVGNAVKFTK---------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 532 (604)
..+.||+.||.++.. ++.|.|.+. +.+. -.|+|+|||+||+.+.+.+.|.
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~--------------------~~l~I~DnGiGmt~eel~~~l~ 84 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG--------------------GTLIVEDNGIGLTEEEVHEFLA 84 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC--------------------cEEEEEeCCCCCCHHHHHHHHh
Confidence 356899999988743 235666653 2222 5789999999999999888652
Q ss_pred c-cccccccc------cCCCCCcchhHHHHHHH
Q 007434 533 K-FAQNQAIA------LRNSSGSGLGLAICKRF 558 (604)
Q Consensus 533 ~-f~~~~~~~------~~~~~g~GlGL~i~~~i 558 (604)
. ..+++... ..-.+.-|+|+..+-.+
T Consensus 85 ~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v 117 (601)
T PRK14083 85 TIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV 117 (601)
T ss_pred hhccchhhhhhhcccccccccccccceEEEEEe
Confidence 2 22222110 01124568888655443
No 102
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.006 Score=63.84 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcC---------------CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 464 LLNVVGNAVKFT---------------KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 464 l~nLl~NA~k~~---------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
+.+||+||.++. ..+.+.|++..+++. =.++|+|||+||..+++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~--------------------kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN--------------------KTLTISDNGIGMTKDEVI 91 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC--------------------CEEEEEeCCCCCCHHHHH
Confidence 578889987753 112466666666554 469999999999988765
Q ss_pred h
Q 007434 529 N 529 (604)
Q Consensus 529 ~ 529 (604)
.
T Consensus 92 ~ 92 (623)
T COG0326 92 E 92 (623)
T ss_pred H
Confidence 4
No 103
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.16 E-value=0.0048 Score=66.82 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 464 LLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 464 l~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
+.+||+||.++.. .+.+.|++..+.+. ..|+|.|||+||+.+++.
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~L~I~DnGiGMt~edl~ 89 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN--------------------KTLTVEDNGIGMTKADLV 89 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC--------------------CEEEEEECCCCCCHHHHH
Confidence 6788888887631 23456666554443 578999999999988866
Q ss_pred hhh
Q 007434 529 NLF 531 (604)
Q Consensus 529 ~if 531 (604)
+-+
T Consensus 90 ~~L 92 (701)
T PTZ00272 90 NNL 92 (701)
T ss_pred HHh
Confidence 544
No 104
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.73 Score=39.33 Aligned_cols=192 Identities=14% Similarity=0.090 Sum_probs=104.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHH
Q 007434 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (604)
Q Consensus 346 ~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 425 (604)
-+.+.+.||+-.|..+|.+-+++|.+...+++. .+.|+.++..++ ..+.|.|+..+...-.-..+|-.+.=+.
T Consensus 17 lLcsRvCHDiISPvgAInnGLeLLdeg~addDA---m~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~ 89 (214)
T COG5385 17 LLCSRVCHDIISPVGAINNGLELLDEGGADDDA---MDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKA 89 (214)
T ss_pred HHHHHHHhhccCcHHHhhchhhhhccCCccHHH---HHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHH
Confidence 466779999999999999999999987666443 445555555444 3456777755443322234554444333
Q ss_pred HHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccC
Q 007434 426 VLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVP 504 (604)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 504 (604)
+...+. ...-+++.+.+.. .+ .... ...+.|++.-|.-..+ +|.+.++++.....
T Consensus 90 A~~~~a----~ekpe~~W~g~r~---~~--~Kn~-vkllLNl~lia~~aiPrGG~~~vtle~~e~d-------------- 145 (214)
T COG5385 90 AQDFFA----NEKPELTWNGPRA---IL--PKNR-VKLLLNLFLIAYGAIPRGGSLVVTLENPETD-------------- 145 (214)
T ss_pred HHHHHh----ccCCcccccCChh---hc--Ccch-HHHHHHHHHHHcccCCCCCeeEEEeecCCcC--------------
Confidence 333332 1223344333222 12 2222 3456788777766666 55577776554433
Q ss_pred CCCceEEEEEEEecCCCC--CcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEE
Q 007434 505 IENHFYLRVQVKDSGSGI--SPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (604)
Q Consensus 505 ~~~~~~~~i~V~D~G~Gi--~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~ 582 (604)
-+|+|.-.|+-+ |++.+ +-....+.. ....++..-=+-.--+++.-|++|.++.. +.-..|+-.
T Consensus 146 ------~rfsi~akG~m~Rvppk~l----el~~G~~~e--E~vdahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~ 211 (214)
T COG5385 146 ------ARFSIIAKGRMMRVPPKFL----ELHSGEPPE--EAVDAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAW 211 (214)
T ss_pred ------ceEEEEecCccccCCHHHH----hhhcCCCcc--ccCCCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEe
Confidence 356666666543 33322 221111110 11223333334445667899999999987 334445443
No 105
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=95.97 E-value=0.029 Score=61.37 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh---
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~--- 529 (604)
++..+.+++.++++||++... ...|.|.+.. +. .|+|+|||.|||.+..+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~--~g---------------------~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND--DG---------------------SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeC--CC---------------------cEEEEEeCCCcCccccCcCCC
Confidence 456789999999999999433 4457766652 22 389999999999874332
Q ss_pred -----hhhcccccccc----ccCCCCCcchhHHHHHHHHH
Q 007434 530 -----LFTKFAQNQAI----ALRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 530 -----if~~f~~~~~~----~~~~~~g~GlGL~i~~~iv~ 560 (604)
+|.....+..- .....+-.|.||+.+..+-+
T Consensus 84 ~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred CchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 33321111100 00112347899988776654
No 106
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=95.60 E-value=0.037 Score=59.87 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhh---cCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc--------h
Q 007434 459 RLMQTLLNVVGNAVK---FTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD--------I 527 (604)
Q Consensus 459 ~l~~il~nLl~NA~k---~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~--------~ 527 (604)
.+.+++.++++||++ +.....|.|.+... . .|+|+|||.|||.+. .
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d--~---------------------~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGFASIIMVILHQD--Q---------------------SIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred CcceeehhhhhcccchhhcCCCCEEEEEEeCC--C---------------------eEEEEecCCccCcccccccCCcHH
Confidence 347788999999999 43455677776433 2 489999999999988 6
Q ss_pred hhhh-hccccccccc---cCCCCCcchhHHHHHHHHH
Q 007434 528 PNLF-TKFAQNQAIA---LRNSSGSGLGLAICKRFVN 560 (604)
Q Consensus 528 ~~if-~~f~~~~~~~---~~~~~g~GlGL~i~~~iv~ 560 (604)
+.+| ....+++-.. ....+-.|.|++.+..+-+
T Consensus 87 e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~ 123 (625)
T TIGR01055 87 EVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSK 123 (625)
T ss_pred HHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcC
Confidence 6677 3332222210 0112337999998887765
No 107
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=95.53 E-value=0.15 Score=38.32 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=56.5
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHh
Q 007434 351 MNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLI 430 (604)
Q Consensus 351 i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 430 (604)
++|.+||.|..|.+++.+-.....+++.++.+..+......+..+-+.+..- .....+++.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~---------~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQS---------EDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCCeecHHHHHHHHHHHH
Confidence 6899999999999999998888888888888877777776666665554221 1234799999999998876
Q ss_pred hh
Q 007434 431 KP 432 (604)
Q Consensus 431 ~~ 432 (604)
..
T Consensus 73 ~~ 74 (76)
T PF07568_consen 73 RQ 74 (76)
T ss_pred HH
Confidence 53
No 108
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=95.46 E-value=0.024 Score=61.20 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh-------
Q 007434 460 LMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN------- 529 (604)
Q Consensus 460 l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~------- 529 (604)
|.+++.++++||++... ...|.|.+...+ .|+|+|||.|||.+..+.
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g-----------------------~I~V~DnG~GIp~~~h~~~~~~~~e 58 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN-----------------------SISVEDNGRGIPVEIHPKEKKYAPE 58 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC-----------------------eEEEEEeCCceeCCccCcCCCCcHH
Confidence 35677899999999864 335666654431 489999999999766432
Q ss_pred -hhhccccccccc----cCCCCCcchhHHHHHHH
Q 007434 530 -LFTKFAQNQAIA----LRNSSGSGLGLAICKRF 558 (604)
Q Consensus 530 -if~~f~~~~~~~----~~~~~g~GlGL~i~~~i 558 (604)
+|....++..-. ....+-.|.|++.+..+
T Consensus 59 ~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnal 92 (594)
T smart00433 59 VIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNAL 92 (594)
T ss_pred HhhhhhcccCCCCCCCccccCCcccchHHHHHHh
Confidence 333222211100 00123468999887765
No 109
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.037 Score=45.74 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccc
Q 007434 458 KRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (604)
..+.-+..+|++||+||...|.|.|........ ..+.|++.-.+-...+.+++.....-.
T Consensus 62 hsvgYl~NELiENAVKfra~geIvieasl~s~~--------------------f~~kvsN~vd~~t~~~f~~ll~~it~g 121 (184)
T COG5381 62 HSVGYLANELIENAVKFRATGEIVIEASLYSHK--------------------FIFKVSNIVDLPTTIDFENLLKVITEG 121 (184)
T ss_pred hhHHHHHHHHHHhhhcccCCCcEEEEEEeccce--------------------EEEEecccCCCccHHHHHHHHHHHhcC
Confidence 345667889999999999999999998877664 788888765554444433322211111
Q ss_pred -----------cccccCCCCCcchhHHHHHHHHHHcCCEE
Q 007434 538 -----------QAIALRNSSGSGLGLAICKRFVNLMEGHI 566 (604)
Q Consensus 538 -----------~~~~~~~~~g~GlGL~i~~~iv~~~gG~i 566 (604)
++...+...|+|+||-. ++.-+|.++
T Consensus 122 DP~dLlieRiEanA~~~d~~gSglGLLT---lmsDYgA~f 158 (184)
T COG5381 122 DPLDLLIERIEANALESDCEGSGLGLLT---LMSDYGAQF 158 (184)
T ss_pred ChHHHHHHHHHhhccCCCCcccccccee---hhhhhccee
Confidence 11112346788888752 344555554
No 110
>PTZ00130 heat shock protein 90; Provisional
Probab=95.36 E-value=0.017 Score=62.95 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCcCchhhhhhcc-ccc----------cccccCCCCCcchhHHHHHHHHHHc------------------
Q 007434 512 RVQVKDSGSGISPQDIPNLFTKF-AQN----------QAIALRNSSGSGLGLAICKRFVNLM------------------ 562 (604)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f-~~~----------~~~~~~~~~g~GlGL~i~~~iv~~~------------------ 562 (604)
.|+|+|||+||..+++..-+..- +++ ......-.+.-|+|++.+--+++..
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g 215 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTA 215 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECC
Confidence 68999999999998865532211 110 0000112345689998774433211
Q ss_pred CCEEEEEecC----CCceEEEEEEEE
Q 007434 563 EGHIWIESEG----LGKGCTAIFIVK 584 (604)
Q Consensus 563 gG~i~i~s~~----~g~Gt~~~~~lp 584 (604)
+|...|...+ .+.||++++.|.
T Consensus 216 ~g~y~I~e~~~~~~~~rGT~I~LhLk 241 (814)
T PTZ00130 216 DAKFTIYKDPRGSTLKRGTRISLHLK 241 (814)
T ss_pred CCcEEEEECCCCCCCCCCcEEEEEEC
Confidence 2445554421 258999888763
No 111
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=94.86 E-value=2.8 Score=37.65 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhhhhhhccCcE
Q 007434 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLL 440 (604)
Q Consensus 361 ~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~ 440 (604)
+|.+-+++|.++..++.. ..++-|.+++..+..-++ |.|+-.+.... -..++..+.-.-+..++ +..+++
T Consensus 3 AI~NGLELL~~~~~~~~~-~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~~~~~~~~----~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPEMR-PAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEARSVLRGYF----AGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCccch-HHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHHHHHHHHH----hCCceE
Confidence 567778888776553332 267778877777665544 55655444322 34677776654444444 334555
Q ss_pred EEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecC
Q 007434 441 VALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSG 519 (604)
Q Consensus 441 ~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G 519 (604)
+...++.+. . +.. .-+++.|++-=+....+ +|.|+|......+. ..++|.=+|
T Consensus 73 l~W~~~~~~---~--~k~-~vklllnl~l~a~~alprGG~i~V~~~~~~~~--------------------~~~~v~a~G 126 (182)
T PF10090_consen 73 LDWQVERDL---L--PKP-EVKLLLNLLLCAEDALPRGGEITVSIEGSEGD--------------------GGWRVRAEG 126 (182)
T ss_pred EEccCcccc---C--CHH-HHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC--------------------ceEEEEEec
Confidence 655544431 1 222 33778888877777776 67788886655554 456677667
Q ss_pred CCC--CcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 520 SGI--SPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 520 ~Gi--~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
..+ +++...-+-. .... ........=.+....+++..|++|.++..
T Consensus 127 ~~~~~~~~~~~~L~g----~~~~--~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 127 PRARLDPDLWAALAG----EDPE--EDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred cccCCCHHHHHHhcC----CCCC--CCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 654 3433322211 1100 11234455567788899999999999886
No 112
>PRK10963 hypothetical protein; Provisional
Probab=94.67 E-value=2.5 Score=39.53 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhhhH----HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee
Q 007434 122 LKNKAAELDREMGLIRTQ----EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL 197 (604)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~ 197 (604)
+++++.+++.+.+++-.. +.....+.++...+.++.+.++++..+. ...+.++++.+.++++++....-.
T Consensus 49 LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~~~~----- 122 (223)
T PRK10963 49 QRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWRLGA----- 122 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecccccccC-----
Confidence 455566666665554333 3445667788889999999999999886 679999999999988764211000
Q ss_pred ccCCCCcccccCCChhHHHH----hhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccce
Q 007434 198 RQQNPVGYTVPIQLPVINQV----FSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRY 273 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~ 273 (604)
...... ..........+ +....+.+-.....+.. -+-+ ......+...+| +..++.
T Consensus 123 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~G~~~~~e~~--~lf~-~~~~v~S~Allp--------------L~~~~~ 182 (223)
T PRK10963 123 -PSDFTH--LALSRQAFEPLRIQRLGQRQHYLGPLNGPELL--LLLP-EAKAVGSVAMSL--------------LGSDGD 182 (223)
T ss_pred -ccchhh--hhccHHHHHHHHHHHhcCCCceeCCCChHHHH--HhCC-CCCcCceeEEEe--------------ccCCCc
Confidence 000000 00111111111 22223322211110000 0000 001122222333 333333
Q ss_pred EEEEEEecCCCccccch-hhHHHHHHHHHHHHHHHHH
Q 007434 274 ALMVLMLPSDSARQWHV-HELELVEVVADQVAVALSH 309 (604)
Q Consensus 274 ~~gvl~~~~~~~~~~~~-~e~~ll~~la~~~a~al~~ 309 (604)
.|++.+.+..+..|++ ....+|+-+|..++..+.+
T Consensus 183 -~GlLalGS~D~~rF~~~mgT~fL~~la~vvs~~L~~ 218 (223)
T PRK10963 183 -LGVLLFSSRDAQHYQQGQGTQLLQHLALMLPELLER 218 (223)
T ss_pred -eEEEEEeCCChhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 7999999999988886 5688999999988877754
No 113
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=94.31 E-value=7.7 Score=41.18 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=33.4
Q ss_pred hhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeec
Q 007434 136 IRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPT 185 (604)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d 185 (604)
+..+.........+.+..+.+.|..+.|-.--..+..+++++.+++|+-+
T Consensus 320 ~d~r~~l~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~ 369 (750)
T COG4251 320 ADYRVQLTEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGG 369 (750)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECC
Confidence 33333333444556666777777777666666778889999999998743
No 114
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=93.98 E-value=0.049 Score=59.70 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 458 KRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.-|.+++.++++||++-.- ...|.|.+..+ . .|+|+|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~d--g---------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHAD--G---------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCC--C---------------------eEEEEEcCCcccCCc
Confidence 4689999999999999443 34577666532 1 489999999999874
No 115
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=92.46 E-value=0.18 Score=51.84 Aligned_cols=59 Identities=24% Similarity=0.457 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccc
Q 007434 460 LMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQA 539 (604)
Q Consensus 460 l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (604)
..-++.++++|++++.. ..|.| ...+++ -=.+.|+|||.||..++++-+.++|.|.|-
T Consensus 28 P~NAlKEliENSLDA~S-T~I~V--~vk~GG-------------------LKLlQisDnG~GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 28 PVNALKELIENSLDANS-TSIDV--LVKDGG-------------------LKLLQISDNGSGIRREDLPILCERFTTSKL 85 (694)
T ss_pred hHHHHHHHHhccccCCC-ceEEE--EEecCC-------------------eEEEEEecCCCccchhhhHHHHHHhhhhhc
Confidence 45577899999998743 33444 444443 135788999999999999999999988775
Q ss_pred c
Q 007434 540 I 540 (604)
Q Consensus 540 ~ 540 (604)
.
T Consensus 86 ~ 86 (694)
T KOG1979|consen 86 T 86 (694)
T ss_pred c
Confidence 3
No 116
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=6.9 Score=35.35 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhhhH----HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee
Q 007434 122 LKNKAAELDREMGLIRTQ----EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL 197 (604)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~ 197 (604)
+++++.+++++...+... ++....+..+...+..+.++++++.++-+..++-++...+.|.++........++.+.
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~~~~~~~~ls~ 129 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDSWVLGALALSR 129 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechhhhhhhHHhhh
Confidence 444555666555544333 3334557788999999999999999999989999999998887664432211100000
Q ss_pred ccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEE
Q 007434 198 RQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMV 277 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gv 277 (604)
..........+..+.+..=+-....+..-........| +..++| +. .....|+
T Consensus 130 ----------~a~e~~r~~~~g~~~~ylG~l~~~e~~ll~~~ea~~vg--SvAi~~--------------L~-~~~~~gl 182 (218)
T COG3159 130 ----------QAFEQVRIQRLGLRQAYLGPLNGAEPLLLGLPEAKAVG--SVAIVP--------------LG-SQAPLGL 182 (218)
T ss_pred ----------hhhHHHHHHhcCCCCcccccCCcchhhhccCCcccccc--eeEEEE--------------cc-CCCCceE
Confidence 00111122222222222211111111000000001111 111222 22 3445788
Q ss_pred EEecCCCccccch-hhHHHHHHHHHHHHHHHHH
Q 007434 278 LMLPSDSARQWHV-HELELVEVVADQVAVALSH 309 (604)
Q Consensus 278 l~~~~~~~~~~~~-~e~~ll~~la~~~a~al~~ 309 (604)
+.+.+..++.|.+ ....+|..++..++-++++
T Consensus 183 lafgS~D~~hf~~gmGT~fL~~la~vl~~~L~R 215 (218)
T COG3159 183 LAFGSRDPRHFQPGMGTLFLRHLALVLARLLER 215 (218)
T ss_pred EEecCCCccccCCCcchHHHHHHHHHHHHHHhh
Confidence 8889988888876 5578888888887777663
No 117
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=91.70 E-value=0.18 Score=53.17 Aligned_cols=58 Identities=28% Similarity=0.321 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccc
Q 007434 460 LMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQA 539 (604)
Q Consensus 460 l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (604)
+.-++.+|++|+++++. ..|.|.+...+- =.|+|+|||.||++...+-+-.++++.+-
T Consensus 21 l~sAVKELvENSiDAGA-T~I~I~~kdyG~---------------------d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGA-TAIDIKVKDYGS---------------------DSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccCC-ceeeEecCCCCc---------------------ceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 55789999999998753 346666554433 36999999999999988887777766654
No 118
>PLN03237 DNA topoisomerase 2; Provisional
Probab=90.67 E-value=0.44 Score=55.59 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhcC-C---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh----
Q 007434 458 KRLMQTLLNVVGNAVKFT-K---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN---- 529 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~-~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~---- 529 (604)
.-|..+|.++|.||++.. . ...|.|.+...++ .|+|.|||.|||-+..++
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g----------------------sIsV~DnGRGIPV~iH~~eg~~ 133 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN----------------------LISVYNNGDGVPVEIHQEEGVY 133 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC----------------------EEEEEecCccccCCCCCCCCCc
Confidence 347778888888888765 2 2346666554333 489999999999875432
Q ss_pred ----hhhcccccccccc----CCCCCcchhHHHHHHHHHHc
Q 007434 530 ----LFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNLM 562 (604)
Q Consensus 530 ----if~~f~~~~~~~~----~~~~g~GlGL~i~~~iv~~~ 562 (604)
||....++.+-.. -.++-+|.|.+.|.-+-+.+
T Consensus 134 ~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 134 VPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred cceEEEEeeeccccCCCCcceeeccccccCccccccccCee
Confidence 3333322211100 11334799988877655443
No 119
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=89.36 E-value=2.4 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 007434 345 NDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLL 392 (604)
Q Consensus 345 ~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l 392 (604)
-..++..-||+.|-|..|.|++++ ...++..++++.+.......
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999885 22334455555555444443
No 120
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=89.23 E-value=0.48 Score=55.42 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhcCC----CC---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh--
Q 007434 459 RLMQTLLNVVGNAVKFTK----EG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN-- 529 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~----~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~-- 529 (604)
-|..+|.++|.||++... +| .|.|.+..+.+ .|+|.|||.|||-+..+.
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g----------------------~IsV~dnGrGIPv~~h~~~~ 114 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG----------------------EISVYNDGEGIPVQIHKEHK 114 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC----------------------eEEEEecCCcccCCCCCCCC
Confidence 477888888888887643 23 35555543322 489999999999875432
Q ss_pred ------hhhcccccccccc----CCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEE
Q 007434 530 ------LFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIV 583 (604)
Q Consensus 530 ------if~~f~~~~~~~~----~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~l 583 (604)
+|....++..-.. -.++-+|+|.+.|.-+-+ .+.++......|-.|..++
T Consensus 115 ~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~----~f~Vev~r~~~gk~y~q~f 174 (1388)
T PTZ00108 115 IYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFST----KFTVECVDSKSGKKFKMTW 174 (1388)
T ss_pred CccceEEEEEeeccccCCCCceeeecccccCCccccccccc----eEEEEEEECCCCCEEEEEe
Confidence 3433322211100 112346999877765543 3444443122244444444
No 121
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=89.22 E-value=0.6 Score=49.34 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccc
Q 007434 458 KRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (604)
..+.|++.+|+-|++++.. ..|.|.+... ...+.|.|||.|+..++++++-+++++.
T Consensus 20 ~sla~~VeElv~NSiDA~A-t~V~v~V~~~----------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA-TCVAVRVNME----------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccCc-eEEEEEecCc----------------------eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 3588999999999998743 4455554332 2789999999999999999999999887
Q ss_pred ccc
Q 007434 538 QAI 540 (604)
Q Consensus 538 ~~~ 540 (604)
+-.
T Consensus 77 K~h 79 (1142)
T KOG1977|consen 77 KCH 79 (1142)
T ss_pred hce
Confidence 654
No 122
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=88.03 E-value=17 Score=32.32 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=32.2
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
+.+++...|.+++... ...|+++|+-+.+-.|..+++.+-+++..+.
T Consensus 115 I~g~GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~~ee~ 161 (177)
T PF06018_consen 115 IYGGGERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSKSEEI 161 (177)
T ss_dssp EEETTEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred EeeCCeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888877765 5689999999999999988888876655443
No 123
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=88.02 E-value=0.44 Score=51.76 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 527 (604)
+..-|.+++.++++||++-.. ...|.|.+.. + -.|+|.|||.|||.+..
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~--d---------------------gsitV~DnGrGIPv~~h 82 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHK--D---------------------NSITVQDDGRGIPTGIH 82 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcC--C---------------------CeEEEEECCCcccCccc
Confidence 456788999999999998643 3346666552 2 24899999999997643
No 124
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=87.08 E-value=0.42 Score=51.50 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhcCC------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh--
Q 007434 458 KRLMQTLLNVVGNAVKFTK------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN-- 529 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~-- 529 (604)
.-|.+++.+++.||++... ...|.|.+. +. .|+|.|||.|||.+..+.
T Consensus 44 ~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~---dg---------------------sisV~dnGrGIPv~~h~~~~ 99 (602)
T PHA02569 44 PGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK---NN---------------------QVTVSDNGRGIPQAMVTTPE 99 (602)
T ss_pred ccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc---CC---------------------EEEEEECCCcccCCcccccc
Confidence 3466677777777777532 224555554 22 489999999999875421
Q ss_pred ---------hhhccccccc---cccCCCCCcchhHHHHHHHHHHc
Q 007434 530 ---------LFTKFAQNQA---IALRNSSGSGLGLAICKRFVNLM 562 (604)
Q Consensus 530 ---------if~~f~~~~~---~~~~~~~g~GlGL~i~~~iv~~~ 562 (604)
+|....++.. ...-.++-+|.|.+.+..+-+.+
T Consensus 100 g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 100 GEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred cccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 1211111100 00111345899998877665544
No 125
>PLN03128 DNA topoisomerase 2; Provisional
Probab=85.46 E-value=1.3 Score=51.15 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhcC-CC---CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch
Q 007434 458 KRLMQTLLNVVGNAVKFT-KE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~-~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 527 (604)
.-|..++.+++.||++.. .+ ..|.|.+..+++ .|+|.|||.|||-+..
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg----------------------sIsV~DnGrGIPv~ih 102 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN----------------------TISVYNNGKGIPVEIH 102 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC----------------------eEEEEecCccccCCCC
Confidence 357888888888888865 22 335555544322 4899999999998654
No 126
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=82.60 E-value=37 Score=30.69 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=51.6
Q ss_pred CChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccc
Q 007434 210 QLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWH 289 (604)
Q Consensus 210 ~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~ 289 (604)
..+.+..++++++++...+..-.|--.... -..++..+.++.|+ ..+ |++++....+|.|+
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~-~lP~ntq~VlvqP~--------------g~~----G~lvlgs~~~R~ft 180 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD-YLPENTQSVLVQPL--------------GQN----GVLVLGSNSPRAFT 180 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh-hcCCCCcEEEEEEc--------------CCC----eEEEEeeCCccccC
Confidence 456889999999988776654333222111 22345566666663 222 88899999999999
Q ss_pred hhhHHHHHHHHHH
Q 007434 290 VHELELVEVVADQ 302 (604)
Q Consensus 290 ~~e~~ll~~la~~ 302 (604)
..|..+++.+|+.
T Consensus 181 ~~D~~Wi~~iA~K 193 (195)
T PF11152_consen 181 KSDEAWIAGIADK 193 (195)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 127
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=82.43 E-value=6.9 Score=29.84 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHH-HhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHH
Q 007434 346 DFLAVMN-HEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFR 424 (604)
Q Consensus 346 ~l~~~i~-Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 424 (604)
.+.+.++ |.+.|.|++|...+.. ..+...+++..+.++.|..- ......+.+.+.++
T Consensus 4 ~L~~QInPHFl~NtLn~I~~l~~~-------------------~~~~~~~~i~~ls~~lRy~l---~~~~~~v~l~~El~ 61 (82)
T PF06580_consen 4 ALQAQINPHFLFNTLNSISWLARI-------------------DPEKASEMILSLSDLLRYSL---SSKEEFVTLEEELE 61 (82)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHc-------------------CHHHHHHHHHHHHHHHHHHh---CCCCCeeeHHHHHH
Confidence 4556677 9999999999887442 13334444444444444322 23334688999988
Q ss_pred HHHHHhhh
Q 007434 425 EVLNLIKP 432 (604)
Q Consensus 425 ~~~~~~~~ 432 (604)
.+..++.-
T Consensus 62 ~i~~Yl~i 69 (82)
T PF06580_consen 62 FIENYLEI 69 (82)
T ss_pred HHHHHHHH
Confidence 88887763
No 128
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=81.71 E-value=0.4 Score=50.47 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh-----
Q 007434 458 KRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN----- 529 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~----- 529 (604)
.-|..++.+.++||++-+- ...|.|.+. .+. .|+|.|||.|||-+..++
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~--~d~---------------------sisV~DnGRGIPvdiH~~~~~~~ 91 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLH--EDG---------------------SISVEDNGRGIPVDIHPKEKVSA 91 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEc--CCC---------------------eEEEEECCCCCccccCCCCCCCc
Confidence 5677888888888888653 334666655 222 489999999999877433
Q ss_pred ---hhhcccccc----ccccCCCCCcchhHHHHHHHH
Q 007434 530 ---LFTKFAQNQ----AIALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 530 ---if~~f~~~~----~~~~~~~~g~GlGL~i~~~iv 559 (604)
+|...-.+- ....-.++-+|.|.+.|..+-
T Consensus 92 vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS 128 (635)
T COG0187 92 VEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALS 128 (635)
T ss_pred eEEEEEeeccCcccCCCccEeecCCCccceEEEeccc
Confidence 333321111 111111334788887776554
No 129
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=80.59 E-value=17 Score=26.21 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Q 007434 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETE--LTPEQRLMVETILKS 388 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~--~~~~~~~~l~~i~~~ 388 (604)
+.+++..+++.+.+.|+++...++.+.... .+++..+.++.+.+.
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~ 48 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIREL 48 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 467888999999999999999888887532 233444444444444
No 130
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=80.18 E-value=0.39 Score=53.13 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 457 EKRLMQTLLNVVGNAVKFTKEG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 457 ~~~l~~il~nLl~NA~k~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
..-|.+++.++++||++-.-+| .|.|.+.. +. .|+|+|||.|||-+..+
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~--Dg---------------------sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLHK--DG---------------------SVEISDNGRGIPCDVSE 178 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEcC--CC---------------------eEEEEeCCccccccccc
Confidence 4457888888888888865433 46666543 22 48999999999986544
No 131
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=79.71 E-value=8 Score=29.58 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHh
Q 007434 351 MNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLI 430 (604)
Q Consensus 351 i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 430 (604)
++|.+||-|+.+.+.+..-.+...+.+ ++.+.+. .+|..+++...--..-....++|.+++...+..+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~--~~~~~~~----------~Rl~ALa~a~~ll~~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVE--EFAEAFS----------GRLQALARAHDLLSRSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHH--HHHHHHH----------HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHhc
Confidence 689999999999999888765443322 1112221 1222222221111112334789999999999877
Q ss_pred hh
Q 007434 431 KP 432 (604)
Q Consensus 431 ~~ 432 (604)
..
T Consensus 70 ~~ 71 (83)
T PF07536_consen 70 GS 71 (83)
T ss_pred cC
Confidence 63
No 132
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=79.55 E-value=20 Score=26.05 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 007434 76 FNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVR 147 (604)
Q Consensus 76 ~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 147 (604)
.|.-..|+..+..++..+|-+ .+..+++.|++ +..++++..+.++++.+...+.
T Consensus 13 ~~vAkdP~~Fl~~vll~LtPl-fiisa~lSwkL-----------------aK~ie~~ere~K~k~Kr~~~i~ 66 (74)
T PF15086_consen 13 EWVAKDPYEFLTTVLLILTPL-FIISAVLSWKL-----------------AKAIEKEEREKKKKAKRQANIA 66 (74)
T ss_pred HHHHcChHHHHHHHHHHHhHH-HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455445666666666666653 35567777887 5666666555555555544443
No 133
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=78.75 E-value=24 Score=31.22 Aligned_cols=79 Identities=6% Similarity=-0.051 Sum_probs=39.5
Q ss_pred HHHHHHHhhHhHHHHHHHHhcCC--CCchHHHHHHHHHHHHhhhHHHhhHHhcccc-hhHHHHHHHHHHHHHHHHHHHHH
Q 007434 26 FFIALAYFSIPLELIYFVKKSAV--FPYRWVLVQFGAFIVLCGATHLINLWTFNMH-SRTVAIVMTTAKVLTAVVSCATA 102 (604)
Q Consensus 26 ~~ia~ay~~ip~~l~y~~~~~~~--~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~-~~~~~~~~~~~k~~ta~vs~~ta 102 (604)
...++....+.+..+++.++.+. .+.+|...++..+ .++..++..++.+..+ ...+..+..+.-++..+..+++.
T Consensus 83 ~~~~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 160 (169)
T PF07694_consen 83 IPAFIIIILIGILAGLISRFFRRKSKKIKLLYLFLLSL--VISIISMLIILLLIPPFSNALSLVSTILLPYIVINVLGIL 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhccHHHHHHHHH--HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555443332 4555555444443 6777676666655544 33444444444444444444444
Q ss_pred HHHH
Q 007434 103 LMLV 106 (604)
Q Consensus 103 i~l~ 106 (604)
++..
T Consensus 161 l~~~ 164 (169)
T PF07694_consen 161 LFGY 164 (169)
T ss_pred HHHH
Confidence 4443
No 134
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=77.45 E-value=19 Score=39.36 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=102.2
Q ss_pred hccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEe-------eccCC----CCcccccCCChhHHHHhhcCC
Q 007434 154 RSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYT-------LRQQN----PVGYTVPIQLPVINQVFSSNH 222 (604)
Q Consensus 154 ~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~v~~~~~ 222 (604)
.+-.+.+..+..+.-.+...+.+.+|.+.+++.+........- ..... .......++....+++-.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~g~va~t~~ 257 (707)
T KOG3689|consen 178 EEQTDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKKLLDYGLRGYVASTGE 257 (707)
T ss_pred HHhcchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHhhhhhhhhheeecccC
Confidence 3356666677777777778888899998888766543211110 00000 111122234456667888899
Q ss_pred eEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC-CccccchhhHHHHHHHHH
Q 007434 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD-SARQWHVHELELVEVVAD 301 (604)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~-~~~~~~~~e~~ll~~la~ 301 (604)
...+++...++++....+....|....+++|+ ....+..+|+..+.+. .+..|+..+..+++.++.
T Consensus 258 ~~ni~~~~~~~~f~~q~d~~~~~~~~il~~pi-------------~~~~~~~igv~~~~nk~~g~~f~~~de~~~~~~~~ 324 (707)
T KOG3689|consen 258 GLNISNAIADPRFDKQVDEDGTGIRPILCIPI-------------KNKKGEVIGVQQLVNKEDGNPFSRNDEDLFEAFTI 324 (707)
T ss_pred cCCCCCccccccccccccccccccceeEEEec-------------ccccCceecceeeeccccCCccccchHHHHHHHHH
Confidence 99999988888887654433344444666663 3335667777766554 555799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007434 302 QVAVALSHAAILEESMRAR 320 (604)
Q Consensus 302 ~~a~al~~a~l~~~~~~~~ 320 (604)
..+..+.++..+...+..+
T Consensus 325 ~~gl~i~~~~~y~~~~~s~ 343 (707)
T KOG3689|consen 325 FCGLSIHNTHMYSKINKSE 343 (707)
T ss_pred HHhhhhhhhhhHHHHhhhc
Confidence 9999999999998766554
No 135
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=76.75 E-value=11 Score=39.38 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=44.6
Q ss_pred hhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhc
Q 007434 24 SDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTF 76 (604)
Q Consensus 24 sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~ 76 (604)
.-...++.++.||+.++++.-..|+.+-.|-+.+++++ .|..++++..+..
T Consensus 182 v~~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag~--sfti~q~l~a~~l 232 (522)
T COG1620 182 VGRQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAGL--SFTIPQFLLANFL 232 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 34556889999999999999998999999999999999 9999999977765
No 136
>PRK04158 transcriptional repressor CodY; Validated
Probab=75.14 E-value=76 Score=30.01 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.6
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
+..++...|.+++.... ..|+++|+.+++-.|..++..+-+.+..+.
T Consensus 117 I~ggGeRLGTLvl~r~~-~~f~~dDliL~EyaATVVgLEIlR~~a~e~ 163 (256)
T PRK04158 117 IIGGGERLGTLILARFD-KEFTDDDLILAEYAATVVGMEILREKAEEI 163 (256)
T ss_pred EecCCeEEEEEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887653 689999999999999999988876655544
No 137
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=74.51 E-value=5 Score=43.79 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh-------
Q 007434 457 EKRLMQTLLNVVGNAVK-FTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP------- 528 (604)
Q Consensus 457 ~~~l~~il~nLl~NA~k-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~------- 528 (604)
..-+++|+.+++.||.+ -.+++--+|.+....+. -.|+|.|||.|||-+..+
T Consensus 51 ~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H~~ek~yvp 110 (842)
T KOG0355|consen 51 VPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIHKVEKVYVP 110 (842)
T ss_pred CCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeecccccccch
Confidence 34589999999999998 22333333444444443 469999999999966543
Q ss_pred -hhhhccccccc
Q 007434 529 -NLFTKFAQNQA 539 (604)
Q Consensus 529 -~if~~f~~~~~ 539 (604)
-+|.-.++..+
T Consensus 111 elifg~Lltssn 122 (842)
T KOG0355|consen 111 ELIFGNLLTSSN 122 (842)
T ss_pred HHHHhhhhhccc
Confidence 25655555443
No 138
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=7.5 Score=40.90 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=15.6
Q ss_pred EEEEEEecCCCCCcCchhh
Q 007434 511 LRVQVKDSGSGISPQDIPN 529 (604)
Q Consensus 511 ~~i~V~D~G~Gi~~~~~~~ 529 (604)
-.++|.|+|+||..+++-.
T Consensus 102 ~tlti~DtGIGMTk~dLvn 120 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDLVN 120 (656)
T ss_pred ceEEEEecCCCcCHHHHHh
Confidence 5799999999999776543
No 139
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=71.35 E-value=1.3 Score=41.41 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhHHHHh-hhhHHHH-------HHHhhHhHHHHHHHHhcCCC
Q 007434 16 LLMKYQY-ISDFFIA-------LAYFSIPLELIYFVKKSAVF 49 (604)
Q Consensus 16 ~~~~~~~-~sd~~ia-------~ay~~ip~~l~y~~~~~~~~ 49 (604)
+|+|+.+ .||+.=. .|-..|-++++.|+.||+.+
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLL 77 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLL 77 (381)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466655 6775422 22334445555666777744
No 140
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=70.71 E-value=41 Score=36.84 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=35.8
Q ss_pred hhhhHHHHhhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhH
Q 007434 14 DELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINL 73 (604)
Q Consensus 14 ~~~~~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i 73 (604)
++.+...+.-++..-++|+..+|+++.+..+..+..+.++++.+..+ .-+...||++..
T Consensus 65 py~l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~-~all~lsHll~~ 123 (616)
T PF10131_consen 65 PYHLRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWILLALS-MALLALSHLLST 123 (616)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHHhHHHH
Confidence 34456667789999999999999988655543332334444333222 235566775544
No 141
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.22 E-value=31 Score=40.57 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=10.2
Q ss_pred HHHHHHhhHhHHHHHH
Q 007434 27 FIALAYFSIPLELIYF 42 (604)
Q Consensus 27 ~ia~ay~~ip~~l~y~ 42 (604)
+.+++.|.+|+++++.
T Consensus 78 LFGl~AYLLP~LL~~~ 93 (1355)
T PRK10263 78 IFGVMAYTIPVIIVGG 93 (1355)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4566778888766443
No 142
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.86 E-value=1.1e+02 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=22.3
Q ss_pred CCCchHHHHHHHH-HHHHhhhHHHhhHHhcccc
Q 007434 48 VFPYRWVLVQFGA-FIVLCGATHLINLWTFNMH 79 (604)
Q Consensus 48 ~~~~~~~~~lf~~-fi~~cg~thl~~i~~~~~~ 79 (604)
|-++...+.++++ |++.=-.|-.++++|+|++
T Consensus 243 dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfg 275 (374)
T KOG1608|consen 243 DEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFG 275 (374)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4446666655555 7666667778888998876
No 143
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=66.10 E-value=69 Score=28.63 Aligned_cols=75 Identities=13% Similarity=-0.035 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHH-HhhhHHHhh--HHhcccchhHHHHHHHHHHHHHHHHH
Q 007434 22 YISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIV-LCGATHLIN--LWTFNMHSRTVAIVMTTAKVLTAVVS 98 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~-~cg~thl~~--i~~~~~~~~~~~~~~~~~k~~ta~vs 98 (604)
...|...|.+.+.+-..+...+.+.+..+.+.+.+.-.++++ ++|.|-++. .|..|.|+ ++..+.+++.
T Consensus 18 ~~~~i~~At~~~i~~~~~~v~~~~~~~r~v~~~~~is~~lv~vfG~lTl~~~d~~fik~KpT--------ii~~l~a~~l 89 (176)
T PF04279_consen 18 KTYGIFVATAVLIVATLAQVAYSWIRRRKVPKMQWISLVLVLVFGGLTLLFHDPRFIKWKPT--------IINWLFAAVL 89 (176)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHHhCCcceeehhHH--------HHHHHHHHHH
Confidence 367777777666555444444333222234444443444333 555654332 23344443 4455555554
Q ss_pred HHHHHH
Q 007434 99 CATALM 104 (604)
Q Consensus 99 ~~tai~ 104 (604)
++...+
T Consensus 90 l~s~~~ 95 (176)
T PF04279_consen 90 LGSLLF 95 (176)
T ss_pred HHHHHh
Confidence 444444
No 144
>COG5393 Predicted membrane protein [Function unknown]
Probab=63.65 E-value=78 Score=25.62 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=19.2
Q ss_pred hhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007434 71 INLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHI 108 (604)
Q Consensus 71 ~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~l 108 (604)
+.+|.|| |.|.+...+-.+.++..++.+..+|++
T Consensus 71 Lvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~l 104 (131)
T COG5393 71 LVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWTL 104 (131)
T ss_pred HHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555 345543344444555666667778887
No 145
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=62.83 E-value=1.2e+02 Score=27.61 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=35.3
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
+.+++...|.+++... ...|+++|+-+.+-.+..+++.+-+-+..+-
T Consensus 120 I~G~g~RLGTLil~R~-d~~F~ddDLiL~E~~aTvvG~qil~~k~eei 166 (261)
T COG4465 120 IYGGGERLGTLILWRL-DDKFTDDDLILVEYAATVVGMQILREKLEEI 166 (261)
T ss_pred EecCCeeeeeEEEEec-CCCCCccceehhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777653 4579999999999888888888766554443
No 146
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=62.66 E-value=81 Score=25.84 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=5.2
Q ss_pred HHHHHHhcCC
Q 007434 39 LIYFVKKSAV 48 (604)
Q Consensus 39 l~y~~~~~~~ 48 (604)
+++.+||++-
T Consensus 19 ii~~vr~~~l 28 (115)
T PF10066_consen 19 IIRLVRKRKL 28 (115)
T ss_pred HHHHHHHhhc
Confidence 3444566553
No 147
>PF14150 YesK: YesK-like protein
Probab=61.79 E-value=68 Score=24.30 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHhhHhHHHHHHHHhc-CCCCchHHHHHHHHHHHHhhhHHHhhHHh
Q 007434 27 FIALAYFSIPLELIYFVKKS-AVFPYRWVLVQFGAFIVLCGATHLINLWT 75 (604)
Q Consensus 27 ~ia~ay~~ip~~l~y~~~~~-~~~~~~~~~~lf~~fi~~cg~thl~~i~~ 75 (604)
++.+.++.+-+...++.||| ++.++.|++. ...+++|-.+-..+++.
T Consensus 3 llg~~~~ii~f~~S~~lr~r~p~k~~~~il~--~ililis~~~v~~S~f~ 50 (81)
T PF14150_consen 3 LLGIVTFIIVFGVSVLLRKRFPKKQPEIILP--LILILISLLTVLISIFL 50 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHH--HHHHHHHHHHHHHHHhe
Confidence 45677888888888888765 5666777663 24555676666665443
No 148
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=59.31 E-value=1.2e+02 Score=26.15 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007434 82 TVAIVMTTAKVLTAVVSC 99 (604)
Q Consensus 82 ~~~~~~~~~k~~ta~vs~ 99 (604)
|+....|.+-.+.+++++
T Consensus 115 p~H~~~G~~~~~la~~t~ 132 (144)
T cd08766 115 PWHVFLGLAIYYLAIATA 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 149
>PRK02975 putative common antigen polymerase; Provisional
Probab=58.47 E-value=22 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHH
Q 007434 28 IALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATH 69 (604)
Q Consensus 28 ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~th 69 (604)
.=..||.||.+++.+..|.. +..|++.+.++. +||..+
T Consensus 159 KRFFYFfIPAmLv~yFL~~t--k~~Wl~fL~~tv--~FG~lt 196 (450)
T PRK02975 159 KRFFYFFIPAMLVVYFLRQD--SKAWLFFLVSTV--AFGLLT 196 (450)
T ss_pred HHHHHHHHHHHHHHHhhccc--HHHHHHHHHHHH--HHhcEE
Confidence 33469999999887664422 367777555554 666543
No 150
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=54.42 E-value=1e+02 Score=29.00 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=45.4
Q ss_pred hhHHHHhhhhHHHHHHH---hhHhHHHHHHHHhc--CCCCchHHHHHHHHHHHHhhhHHHhhH-HhcccchhHHHHHHHH
Q 007434 16 LLMKYQYISDFFIALAY---FSIPLELIYFVKKS--AVFPYRWVLVQFGAFIVLCGATHLINL-WTFNMHSRTVAIVMTT 89 (604)
Q Consensus 16 ~~~~~~~~sd~~ia~ay---~~ip~~l~y~~~~~--~~~~~~~~~~lf~~fi~~cg~thl~~i-~~~~~~~~~~~~~~~~ 89 (604)
..++.|..+|+...++- |.+|+.++++.-.- -..+-.|.+.+|..+ ++||.+--+.+ +++.-..++..+.+++
T Consensus 102 d~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~-la~~~~~~F~i~f~~~~~aFwt~~as~l 180 (268)
T COG4587 102 DYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLA-LALLFLLRFLIQFTFGLFAFWTERASSL 180 (268)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 35688899999999987 78888888887543 234445555555543 46664421111 2222223333444555
Q ss_pred HHHHHHH
Q 007434 90 AKVLTAV 96 (604)
Q Consensus 90 ~k~~ta~ 96 (604)
.+..-.+
T Consensus 181 ~~~~~~l 187 (268)
T COG4587 181 GKFWWLL 187 (268)
T ss_pred HHHHHHH
Confidence 5554333
No 151
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.07 E-value=97 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHh
Q 007434 29 ALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWT 75 (604)
Q Consensus 29 a~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~ 75 (604)
++.+..|-+-+.+| +|++-.++....+++.+++++-...-+.++.
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~i~~l~ 48 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVPIRILF 48 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777655 5667788888877777554444444444443
No 152
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=53.93 E-value=1.4e+02 Score=25.53 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=37.6
Q ss_pred HHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhccc
Q 007434 27 FIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNM 78 (604)
Q Consensus 27 ~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~ 78 (604)
.|.++|+.+++..+...++. .+.|....+-.+++..|..|++.+=.+.-
T Consensus 2 Pi~lg~~~~G~~fG~la~~~---G~~~~~~~~mS~lvfaGa~Qf~~~~l~~~ 50 (143)
T PF03591_consen 2 PIALGYIPFGIAFGVLAVEA---GFSWWEAILMSLLVFAGAAQFVAVGLLAA 50 (143)
T ss_pred cchHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 36789999998888777553 47777777888888999999987765443
No 153
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=13 Score=37.94 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=14.4
Q ss_pred EEEEEEecCCCCCcCchh
Q 007434 511 LRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 511 ~~i~V~D~G~Gi~~~~~~ 528 (604)
-.+.|+|+|+||..+.+-
T Consensus 142 klLhi~DtGiGMT~edLi 159 (785)
T KOG0020|consen 142 KLLHITDTGIGMTREDLI 159 (785)
T ss_pred CeeeEecccCCccHHHHH
Confidence 458999999999876643
No 154
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.09 E-value=2.4e+02 Score=27.98 Aligned_cols=60 Identities=10% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLS 403 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (604)
+..+.-.+.++|.-+. |..+...++.+... .+++..+.++.+++...+....+.++-.+.
T Consensus 32 ~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 32 KLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3444556666666553 23333333333222 455667778888888888888888876554
No 155
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=52.96 E-value=1.5e+02 Score=26.47 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=46.5
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHhcC----CC------CchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKKSA----VF------PYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVM 87 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~----~~------~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~ 87 (604)
...|..+|...-+.|+.+.+...|.-.|++ +. +..|+..+.+..+...+.+.++.-++ ++ +..
T Consensus 41 ~~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~-~~~--- 113 (181)
T PF04973_consen 41 YQAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLT---DS-PFP--- 113 (181)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-chH---
Confidence 345668999999999998888888776432 22 23444555555555556655554433 11 222
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007434 88 TTAKVLTAVVSCATALMLV 106 (604)
Q Consensus 88 ~~~k~~ta~vs~~tai~l~ 106 (604)
..+++|...|+...+++.
T Consensus 114 -~~Da~~~~~siva~~l~~ 131 (181)
T PF04973_consen 114 -WLDALTTVLSIVAQWLMA 131 (181)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 235556655555544443
No 156
>COG4708 Predicted membrane protein [Function unknown]
Probab=52.85 E-value=74 Score=26.87 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred hHHHHHHHhhHhHHH--HHHHHhcCCCCchHHH
Q 007434 25 DFFIALAYFSIPLEL--IYFVKKSAVFPYRWVL 55 (604)
Q Consensus 25 d~~ia~ay~~ip~~l--~y~~~~~~~~~~~~~~ 55 (604)
|.+.+..--.|-+.+ .+|.++.||.-|+.++
T Consensus 74 Dv~~G~~sT~I~l~Lgv~~f~ky~Kdy~~ngi~ 106 (169)
T COG4708 74 DVFVGGLSTLIFLSLGVILFSKYSKDYLFNGII 106 (169)
T ss_pred HHHhccHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 445544444455555 8888988877554443
No 157
>PRK00259 intracellular septation protein A; Reviewed
Probab=52.27 E-value=1.2e+02 Score=27.18 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=28.5
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHH-HHHHHHHhhhHHHh--hHHhcccc
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQ-FGAFIVLCGATHLI--NLWTFNMH 79 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~l-f~~fi~~cg~thl~--~i~~~~~~ 79 (604)
..|...|.+.+.+...+.+...+.+..+...+.++ ++..+++||.|-.+ ..+..|+|
T Consensus 19 ~~gi~~AT~~~i~a~~~~~~~~~~~~~~v~~m~~i~~~lv~vfGglTl~l~d~~fik~KP 78 (179)
T PRK00259 19 LYGIYAATAALIVATVIQLAISWIRYRKVEKMQLISLVVVVVFGGLTLVFHDDTFIKWKP 78 (179)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhCCCCeEeeHH
Confidence 45666666666655555544433333333333332 44455577777543 22344554
No 158
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=52.01 E-value=23 Score=24.76 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHHHhhHhHHHHHHHHhc-CCCCchHHHHHHHHHHHHhh
Q 007434 27 FIALAYFSIPLELIYFVKKS-AVFPYRWVLVQFGAFIVLCG 66 (604)
Q Consensus 27 ~ia~ay~~ip~~l~y~~~~~-~~~~~~~~~~lf~~fi~~cg 66 (604)
+.++....+...++|+.|++ +..-++++..+++...+..|
T Consensus 6 ~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vAy~lli~~ 46 (58)
T PF10966_consen 6 FGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVAYILLIVS 46 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 45667777888889999865 34466777766666544333
No 159
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=51.74 E-value=68 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHHHHhhhHHHhhHHh
Q 007434 47 AVFPYRWVLVQFGAFIVLCGATHLINLWT 75 (604)
Q Consensus 47 ~~~~~~~~~~lf~~fi~~cg~thl~~i~~ 75 (604)
++.-...+..++|.+.++.|..++...+.
T Consensus 17 p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 17 PDASLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666788888899999999988777
No 160
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=51.12 E-value=1.7e+02 Score=25.75 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 28 IALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVH 107 (604)
Q Consensus 28 ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~ 107 (604)
.-++|-..++.+..++.- ...+||..-.++++.+..|.+ . -+++.+-.. +.++ ..+.++.
T Consensus 83 aL~~YW~LSllLgl~~~l-----LgR~fW~lkv~lfl~~f~~Il---~-~~~~~~e~a----~l~L-------~~lv~~~ 142 (177)
T PF14965_consen 83 ALLAYWFLSLLLGLLFAL-----LGRVFWLLKVVLFLLSFVYIL---Q-KYEGPPERA----ALLL-------CLLVLVC 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---H-cCCCchHHH----HHHH-------HHHHHHH
Confidence 345677777777666532 145566555555555555544 2 233211110 1111 1122222
Q ss_pred hhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHH
Q 007434 108 IIPDLLSVKTRELFLKNKAAELDREMGLIRTQEE 141 (604)
Q Consensus 108 llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~ 141 (604)
++-.....+++.--++++...+++++++++.+++
T Consensus 143 ~l~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 143 FLTGLVGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred HHccccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333335566678888888888777654
No 161
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=50.44 E-value=1.8e+02 Score=30.46 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhcC---CCC-cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhh--cc
Q 007434 461 MQTLLNVVGNAVKFT---KEG-NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT--KF 534 (604)
Q Consensus 461 ~~il~nLl~NA~k~~---~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~--~f 534 (604)
..++.+++.||+=|. ..| .|.|.+..+ +|+|++.|.-.+.-..+.++. ++
T Consensus 272 ~~alREai~NAv~HRDYs~~~~~v~I~iydD------------------------RieI~NPGgl~~gi~~~~l~~~~s~ 327 (467)
T COG2865 272 LEALREAIINAVIHRDYSIRGRNVHIEIYDD------------------------RIEITNPGGLPPGITPEDLLKGRSK 327 (467)
T ss_pred HHHHHHHHHHHHHhhccccCCCceEEEEECC------------------------eEEEECCCCCCCCCChhHcccCCCc
Confidence 557889999998774 455 677776543 467777663222222222222 11
Q ss_pred ccccccc-----cCCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceEEEEEEEEec
Q 007434 535 AQNQAIA-----LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 535 ~~~~~~~-----~~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
.+.+... ..-....|-|+.-++..++.||.. ..+... ...|.++++..
T Consensus 328 ~RNp~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~~----~~~~~~~~~~~ 381 (467)
T COG2865 328 SRNPVLAKVLRDMGLIEERGSGIRRMFDLMEENGLPKPEFEED----NDYVTVILHGK 381 (467)
T ss_pred ccCHHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCCCceeecc----CCeEEEEEecc
Confidence 1100000 000235688889999999988876 333332 23455555553
No 162
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=50.19 E-value=1.4e+02 Score=31.78 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=22.0
Q ss_pred HhhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHH
Q 007434 21 QYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60 (604)
Q Consensus 21 ~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~ 60 (604)
|++-+..|+++.|.--+..+|-. |..+..+|+-.+.+.
T Consensus 109 ~ili~~~i~i~a~~~~l~~g~~s--r~~~glqw~~l~~~~ 146 (952)
T TIGR02921 109 HILINIGIAIAAFAACLFGGVAS--RFKIGLQWLQLLAAM 146 (952)
T ss_pred hHHHHHHHHHHHHHHHHhhcchh--cccchHHHHHHHHHH
Confidence 56667777777666555554433 344566776544444
No 163
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=49.13 E-value=2.3e+02 Score=26.62 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=35.1
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
+.+++...|.+++.... ..|+++|+-+.+-.|..++.-+-+.+..+.
T Consensus 114 I~g~g~RLGTl~l~r~~-~~F~~dDliLaEy~aTVVG~Eilr~~~~~i 160 (251)
T TIGR02787 114 IYGGGERLGTLILARSD-KEFNDDDLVLAEYAATVVGMELLRAQAEEI 160 (251)
T ss_pred eecCCceeEEEEEEEcC-CCCCcccchhhhhHhHHHHHHHHHHHHHHH
Confidence 66666677777776543 689999999999888888887766655443
No 164
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=48.23 E-value=93 Score=33.30 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=37.5
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHH
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLW 74 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~ 74 (604)
.+-....+.++.+|+.++++..+.|..+-.|.+.+++++ .++..+.+..+
T Consensus 179 ~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~ 228 (522)
T PF02652_consen 179 MVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVAN 228 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344455678888999999999888888888888888777 66666655444
No 165
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=48.21 E-value=1.6e+02 Score=27.40 Aligned_cols=49 Identities=6% Similarity=0.179 Sum_probs=37.5
Q ss_pred hHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhc
Q 007434 25 DFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTF 76 (604)
Q Consensus 25 d~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~ 76 (604)
-+.|+++|+.+++..+....+. .+.|....+-.++++.|..|++.+-.+
T Consensus 9 ~lPi~lgyip~G~afGila~~~---Gls~~~a~lmS~~vfAGaaQf~~v~ll 57 (221)
T TIGR00346 9 TIPILAGFLFLGIAYGILMVQL---GFDYKYPLFMSLFIYAGSVEFVAATLL 57 (221)
T ss_pred hChHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3678999999999999887554 466666666777789999998866544
No 166
>PRK05415 hypothetical protein; Provisional
Probab=47.74 E-value=3e+02 Score=27.52 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=12.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhh
Q 007434 148 MLTHEIRSTLDRHTILKTTLVELG 171 (604)
Q Consensus 148 ~~~~~l~~~~~~~~il~~~~~~~~ 171 (604)
+..+.+.+..|..+++.-.-+.+.
T Consensus 172 r~~~~~~~~~~~~e~l~L~e~~vl 195 (341)
T PRK05415 172 RWQASLHETHNDAELLRLYEREVL 195 (341)
T ss_pred HHHHhhcccCCHHHHHHHHHHHhh
Confidence 334445555666665555555443
No 167
>PF10693 DUF2499: Protein of unknown function (DUF2499); InterPro: IPR019634 This entry represents proteins found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins. As the family is primarily found in phototrophic organisms it may play a role in photosynthesis.
Probab=47.73 E-value=1.3e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 80 SRTVAIVMTTAKVLTAVVSCATALMLVH 107 (604)
Q Consensus 80 ~~~~~~~~~~~k~~ta~vs~~tai~l~~ 107 (604)
+..++++..+.-.+|.+.++..++..++
T Consensus 62 ~~~l~~Lv~lQa~lTl~GN~tL~~Aa~~ 89 (90)
T PF10693_consen 62 APSLEWLVTLQAALTLLGNITLAIAAWR 89 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999887776654
No 168
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=47.62 E-value=34 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=20.7
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHH-HHhhhHHHh
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFI-VLCGATHLI 71 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi-~~cg~thl~ 71 (604)
+.+++++..+...-++-+.+.--....|-+-...+|+.-| +.|+.+-++
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p~p~~iffavcI~l~~~s~~lL 78 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPPKPLHIFFAVCILLICISAILL 78 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCCCceEEehHHHHHHHHHHHHhh
Confidence 4555555555544444333322222222232333355544 455554444
No 169
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=47.60 E-value=81 Score=22.47 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=25.7
Q ss_pred CchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHH
Q 007434 50 PYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAI 85 (604)
Q Consensus 50 ~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~ 85 (604)
+++-++..++.||-+.|..-.+.-..+-.+....|.
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD~~~~~~yg 40 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFDEERVFRYG 40 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 467778888889999988887777777644433343
No 170
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=42.96 E-value=1.4e+02 Score=27.96 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=20.6
Q ss_pred HhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhH
Q 007434 32 YFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGAT 68 (604)
Q Consensus 32 y~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~t 68 (604)
++.+|+.+.++.|||+....+..++=..+|+++....
T Consensus 2 ~~~~pi~l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vl 38 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKKISWKPFILGALVFFVFAQVL 38 (223)
T ss_pred eehHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3678888777777766544444443333354444443
No 171
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=42.63 E-value=95 Score=31.28 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhhhHHHhhHHhcccc-hhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCHHH
Q 007434 52 RWVLVQFGAFIVLCGATHLINLWTFNMH-SRTVA--IVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120 (604)
Q Consensus 52 ~~~~~lf~~fi~~cg~thl~~i~~~~~~-~~~~~--~~~~~~k~~ta~vs~~tai~l~~llp~~l~l~s~~~ 120 (604)
.|++++|..|++..|...++..-.-++- .++.| -.|....++.+++.+.+.+++.+++-.++..|....
T Consensus 2 ~~vl~l~~ll~agi~~g~~~~~qqgyVlI~~~~~~ie~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~ 73 (400)
T COG3071 2 RRVLLLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEMSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTR 73 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCCceEEEecceeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4667777777666666665554322111 11111 122233444455555566667777778888885443
No 172
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.81 E-value=3.3e+02 Score=26.28 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHhc
Q 007434 125 KAAELDREMGLIRTQEETGRHVRMLTHEIRS 155 (604)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 155 (604)
.+++|+++..+++.+..+++.+.+-.+++++
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555555444444444443
No 173
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=41.58 E-value=2.3e+02 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=38.5
Q ss_pred hHHHHHHHhhHhHHHHHHHHhc-CCCCchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHH
Q 007434 25 DFFIALAYFSIPLELIYFVKKS-AVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVA 84 (604)
Q Consensus 25 d~~ia~ay~~ip~~l~y~~~~~-~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~ 84 (604)
.+.-..+|..|+++++..+.++ +--+++|..- ..+.+.+.|..|...+...-+-+++.+
T Consensus 128 elG~~~~yi~~~lllV~~l~~~i~Ye~WR~~H~-lm~vvYilg~~H~~~l~~~~~~s~~a~ 187 (438)
T COG4097 128 ELGEWSAYIFIGLLLVWRLWLNIGYENWRIAHR-LMAVVYILGLLHSYGLLNYLYLSWPAV 187 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHhcchhHhhccHH
Confidence 3555678999999888755444 4557788874 444566888889777655433333443
No 174
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=41.54 E-value=78 Score=27.33 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=17.9
Q ss_pred HHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHH
Q 007434 29 ALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAF 61 (604)
Q Consensus 29 a~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~f 61 (604)
+++.+.+.+.++...|.|.+-+|+=+.+.+..+
T Consensus 24 ~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ 56 (149)
T PF11694_consen 24 IILLLVLIFFFIKYLRNRLDTKYRDLSIIALLL 56 (149)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 333344444444445666677777766555544
No 175
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=41.19 E-value=2.7e+02 Score=25.53 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhc--ccchhHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTF--NMHSRTVAIVMTTA 90 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~--~~~~~~~~~~~~~~ 90 (604)
+..|++|-.+.|.-|..-+-....-+.. .+|.++.|++ ...+.++++|-..|++-.+.+ +.......|++|+.
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~~ 112 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGVI 112 (200)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3445566666666555443222222222 3577777765 666778889999999987665 22234567887776
Q ss_pred HHHHHHHHHHHH
Q 007434 91 KVLTAVVSCATA 102 (604)
Q Consensus 91 k~~ta~vs~~ta 102 (604)
..+..++...++
T Consensus 113 l~~l~~~~af~G 124 (200)
T cd00284 113 LLLLTMATAFMG 124 (200)
T ss_pred HHHHHHHHHHcc
Confidence 665554443333
No 176
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=40.69 E-value=2.3e+02 Score=24.19 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHhhHhHHHHHHHHhcCCCCchHHH-------HHHHH-HHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHH
Q 007434 27 FIALAYFSIPLELIYFVKKSAVFPYRWVL-------VQFGA-FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVS 98 (604)
Q Consensus 27 ~ia~ay~~ip~~l~y~~~~~~~~~~~~~~-------~lf~~-fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs 98 (604)
....||.|....+...-++--|.++..++ .-|+. =|.+|=..+++.-|... .--+||+..+..-++++++
T Consensus 38 gvlmaylSL~~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~~Wsls--iM~wYWll~LlLyl~tiis 115 (161)
T PF13042_consen 38 GVLMAYLSLYILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLGKWSLS--IMMWYWLLILLLYLITIIS 115 (161)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHH
Confidence 34678888877666444333355555552 11222 12234344455445432 2456777666666666555
Q ss_pred HHHHH
Q 007434 99 CATAL 103 (604)
Q Consensus 99 ~~tai 103 (604)
+.+-+
T Consensus 116 LViLV 120 (161)
T PF13042_consen 116 LVILV 120 (161)
T ss_pred HHHHh
Confidence 44433
No 177
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=40.62 E-value=96 Score=32.93 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHhhHhHHHHHHHHhcCCCCchHHHHHH
Q 007434 29 ALAYFSIPLELIYFVKKSAVFPYRWVLVQF 58 (604)
Q Consensus 29 a~ay~~ip~~l~y~~~~~~~~~~~~~~~lf 58 (604)
-+++|.||.+.++|-.. ..+.|.|+.=+|
T Consensus 158 ~l~~~~ip~~~gff~l~-~~i~~~~~~~i~ 186 (952)
T TIGR02921 158 LLAFFAIPAAAGFFELL-EEIEFEHLGDIF 186 (952)
T ss_pred HHHHHhhhHHhHHHHHH-HHHHHHhHHHHH
Confidence 35799999999988643 234566665333
No 178
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=40.56 E-value=3.5e+02 Score=26.24 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=21.2
Q ss_pred HhhHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007434 70 LINLWTFNMHS-RTVAIVMTTAKVLTAVVSCATALMLVHIIPDLL 113 (604)
Q Consensus 70 l~~i~~~~~~~-~~~~~~~~~~k~~ta~vs~~tai~l~~llp~~l 113 (604)
++.++++..|. .+-.|.......+.++-....+++.|++.|.-.
T Consensus 56 l~~v~t~~~~~~~~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~ 100 (284)
T PF12805_consen 56 LVAVYTMAGPSPGPEALEHALLFLAGGLWYLLLSLLWWPLRPYRP 100 (284)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34445544443 232333334444445555555666677766533
No 179
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=39.00 E-value=4.4e+02 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHh------------cCCCCchHHHHHHHH
Q 007434 22 YISDFFIALAYFSIPLELIYFVKK------------SAVFPYRWVLVQFGA 60 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~~------------~~~~~~~~~~~lf~~ 60 (604)
.++...|+++.|+..++++-+-.- .+|-..+++++.|.+
T Consensus 53 tia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Fig 103 (371)
T PF10011_consen 53 TIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIG 103 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHH
Confidence 467777888888777777655411 235567777776666
No 180
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.59 E-value=2.1e+02 Score=27.89 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 310 AAILEESMRARDLLMQQNIALDSARREAETAIRARND 346 (604)
Q Consensus 310 a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 346 (604)
..+++|-+++++++.+.+.++....++++++++.+++
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 181
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=38.54 E-value=4e+02 Score=26.24 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~ 172 (604)
-+.+..+.+.++....+.+.++.+.++..+
T Consensus 139 P~aLdlivr~l~aG~~l~dAl~~~~~e~~~ 168 (309)
T COG4965 139 PEALDLIVRALRAGAPLPDALRLAAKETPE 168 (309)
T ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHhhCCC
Confidence 456777888899999988888877765543
No 182
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=38.36 E-value=23 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=9.8
Q ss_pred EEEEEEecCCC
Q 007434 511 LRVQVKDSGSG 521 (604)
Q Consensus 511 ~~i~V~D~G~G 521 (604)
.+|+|.|+|+-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999974
No 183
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=38.19 E-value=1.3e+02 Score=25.68 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007434 56 VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPD 111 (604)
Q Consensus 56 ~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~llp~ 111 (604)
+||.+++++-..+-.+. +.-|-++++++ ..+|++..+..++++.-+-|.
T Consensus 37 ~L~~~M~~~y~~~~~lm---~~spy~G~~s~----~~ftv~fv~m~~~llfDI~P~ 85 (155)
T PF10777_consen 37 YLCLAMYAAYLAVAALM---YYSPYFGLGSV----WGFTVFFVVMAAFLLFDIKPR 85 (155)
T ss_pred HHHHHHHHHHHHHHHHH---HhcchhhhHHH----HHHHHHHHHHHHHHHhhccce
Confidence 67777755555554442 22333344443 556777777777777777554
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=38.02 E-value=5.8e+02 Score=28.27 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC-------CCCccc---ccCCChhHHHHhhcCCeEEeCCCCcccc
Q 007434 165 TTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ-------NPVGYT---VPIQLPVINQVFSSNHAVKISPNCPVAR 234 (604)
Q Consensus 165 ~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~v~~~~~~~~i~~~~~~~~ 234 (604)
..++.+.+.+.-..+.+.+-|.++..+......... ...|.. ...++..++-++..++|+.+........
T Consensus 59 ~~l~~l~~~l~~~~~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~ 138 (638)
T PRK11388 59 AALEDAWEYMADRECALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQ 138 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHH
Confidence 344455555665667888888877655432211100 011111 1124567888888888887764321100
Q ss_pred ccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHH
Q 007434 235 LRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVAL 307 (604)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al 307 (604)
....+....+|+....+...|++.+.... ...++....++..++..+...+
T Consensus 139 ---------------------~~~~~~c~aaPI~d~~G~liGvl~l~~~~-~~~~~~~l~lv~~~a~~Ie~~l 189 (638)
T PRK11388 139 ---------------------ALHNWAFCATPVFDSKGRLTGTIALACPV-EQTSAADLPLTLSIAREVGNLL 189 (638)
T ss_pred ---------------------hccCceEEeeEEEcCCCCEEEEEEEEecc-cccChhhHHHHHHHHHHHHHHH
Confidence 01112223446566678889998776643 2344445555555555444433
No 185
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=37.94 E-value=2.8e+02 Score=24.31 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=24.3
Q ss_pred HHHHhhHhHHHHHHHHhcCC----CCchHHHHHHHHHHHHhhhHHHh
Q 007434 29 ALAYFSIPLELIYFVKKSAV----FPYRWVLVQFGAFIVLCGATHLI 71 (604)
Q Consensus 29 a~ay~~ip~~l~y~~~~~~~----~~~~~~~~lf~~fi~~cg~thl~ 71 (604)
.++....++..+++.+|.+. ..++|...+.++++.+++....-
T Consensus 79 ~i~~~~~g~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 125 (169)
T PF07155_consen 79 MISKGLMGFIAGLIFRKKKKKKKSKSFNILAIILGALIMVIGYFIFG 125 (169)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766532 23556555555555555544433
No 186
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=37.15 E-value=3.2e+02 Score=29.98 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q 007434 82 TVAIVMTTAKVLTAV-VSCATALMLVHIIPD 111 (604)
Q Consensus 82 ~~~~~~~~~k~~ta~-vs~~tai~l~~llp~ 111 (604)
+..|......++.++ ..++.+++.+-++|.
T Consensus 426 ~~~~~~~~~~~~~~flsGl~s~il~iGllP~ 456 (700)
T COG1480 426 TLSWYDALQDAIFAFLSGLLSGILVLGLLPY 456 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445544443 334455555555553
No 187
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=37.01 E-value=4.5e+02 Score=28.57 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC-------CCcc---cccCCChhHHHHhhcCCeEEeCCCCcc
Q 007434 163 LKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN-------PVGY---TVPIQLPVINQVFSSNHAVKISPNCPV 232 (604)
Q Consensus 163 l~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~v~~~~~~~~i~~~~~~ 232 (604)
.+--++.+.+.++-..|++.+-|.++..+.......... ..|. ....+...++.++..++++.|....-.
T Consensus 72 A~~~L~~L~~~v~~~~~~vLLtD~~GViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~~GTNgIGTcLve~~aVtI~~~qHF 151 (606)
T COG3284 72 AQPELDRLFQAVAGSGCCVLLTDADGVILERRGDPRDDEDFRKAGLWLGAVWSEPREGTNGIGTCLVEGEAVTIHGDQHF 151 (606)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEcCceeEEEeecChhhhhhhhhhccccccccccccccccchhhhhccCcceEEehhhhH
Confidence 344455566666667788888888776655543322211 1111 112245577888888888887654321
Q ss_pred ccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 007434 233 ARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAI 312 (604)
Q Consensus 233 ~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l 312 (604)
.. ...+++.-..|+...++...|++-+.+.. ...+.....++..+...++-.+|...+
T Consensus 152 ~~---------------------~~~~lsCsAaPI~D~qG~L~gVLDISs~r-~~~~~~s~~~~~~iV~~~ar~IE~~~~ 209 (606)
T COG3284 152 IQ---------------------AHHGLSCSAAPIFDEQGELVGVLDISSCR-SDLSEASQPLTLAIVTDAARRIEAELF 209 (606)
T ss_pred hh---------------------cccCceeeeeccccCCCcEEEEEEeccCC-cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 01122334557788899999999988653 344555566677777777777776666
Q ss_pred HHHH
Q 007434 313 LEES 316 (604)
Q Consensus 313 ~~~~ 316 (604)
.+..
T Consensus 210 ~~~~ 213 (606)
T COG3284 210 LAAF 213 (606)
T ss_pred HHhc
Confidence 5543
No 188
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=36.24 E-value=3.7e+02 Score=25.23 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=23.7
Q ss_pred HHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHH
Q 007434 61 FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAV 96 (604)
Q Consensus 61 fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~ 96 (604)
+++++-.+.++..|.+..|+.+-..+..+.-.++++
T Consensus 79 l~~lsl~~~~~~L~Ff~vpS~~~r~l~~vl~~Lllv 114 (232)
T PF10329_consen 79 LTLLSLITNLFNLWFFGVPSKLERILNIVLAGLLLV 114 (232)
T ss_pred HHHHHHHHHHHHHHheecCcHHHHHHHHHHHHHHHH
Confidence 455666667777777888887666665555555554
No 189
>COG3462 Predicted membrane protein [Function unknown]
Probab=36.21 E-value=2.3e+02 Score=22.76 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007434 89 TAKVLTAVVSCATALMLVHI 108 (604)
Q Consensus 89 ~~k~~ta~vs~~tai~l~~l 108 (604)
++.++.+++++...+...-+
T Consensus 51 lImpI~~~vvli~lvvfm~~ 70 (117)
T COG3462 51 LIMPIFWAVVLIFLVVFMFY 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666665555544443333
No 190
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=35.85 E-value=3.6e+02 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHhhHHhcccc
Q 007434 56 VQFGAFIVLCGATHLINLWTFNMH 79 (604)
Q Consensus 56 ~lf~~fi~~cg~thl~~i~~~~~~ 79 (604)
..+++++++|+++-+..+.+..-+
T Consensus 237 ~~~ga~L~~~~~~l~~~~~ta~g~ 260 (308)
T COG3447 237 PVFGASLIFCLLALFAILATAQGK 260 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCc
Confidence 346778889999988888775433
No 191
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=35.84 E-value=2.9e+02 Score=23.83 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHhhHhHHHHHH-HHhcCCCCchHHHHHHHHHH
Q 007434 22 YISDFFIALAYFSIPLELIYF-VKKSAVFPYRWVLVQFGAFI 62 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~-~~~~~~~~~~~~~~lf~~fi 62 (604)
...+.++.++++.-.+.+.+. .+|++.+|.-.+.++....+
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v~ 97 (149)
T PF10754_consen 56 WYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISVL 97 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 457777777777777766665 45556777777776666654
No 192
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=35.28 E-value=3e+02 Score=23.91 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 007434 82 TVAIVMTTAKVLTAVV 97 (604)
Q Consensus 82 ~~~~~~~~~k~~ta~v 97 (604)
|+....|..-.+.+++
T Consensus 122 p~H~~~G~~i~~Lai~ 137 (153)
T cd08765 122 PLHVYSGLFIFGTVIA 137 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 193
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=35.23 E-value=1.2e+02 Score=27.55 Aligned_cols=87 Identities=9% Similarity=-0.085 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHhcCC-CCchHHHHHHHHHHHHhhhHHHhhH-Hhcccc---------hhHHHHHHHHH
Q 007434 22 YISDFFIALAYFSIPLELIYFVKKSAV-FPYRWVLVQFGAFIVLCGATHLINL-WTFNMH---------SRTVAIVMTTA 90 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~~~~~-~~~~~~~~lf~~fi~~cg~thl~~i-~~~~~~---------~~~~~~~~~~~ 90 (604)
..++....+-.|.+++-++.--...++ ..++|...+...+.++.-..--+.+ +.+-.| .++||-++++.
T Consensus 24 ~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~ 103 (191)
T PF03956_consen 24 KISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVL 103 (191)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHH
Confidence 356666666666666666643111122 2255555444443322221111111 111222 58899999887
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007434 91 KVLTAVVSCATALMLVHI 108 (604)
Q Consensus 91 k~~ta~vs~~tai~l~~l 108 (604)
..-..-..+++..++..+
T Consensus 104 i~~~~~~~~G~iafl~n~ 121 (191)
T PF03956_consen 104 ITQLYGPELGTIAFLSNL 121 (191)
T ss_pred HHhhhCHHHHHHHHHHHH
Confidence 555455667777777777
No 194
>MTH00145 CYTB cytochrome b; Provisional
Probab=34.96 E-value=2.4e+02 Score=28.76 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=49.6
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+..|++|-.+.+.-|-.-+-....-+.. .+|.++.|.+ ..-+.+.++|-..|+.=.+.+...-.+..|.+|+...
T Consensus 42 ~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~ 121 (379)
T MTH00145 42 LGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLL 121 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHHH
Confidence 4456677777666665543322222222 4578877766 5567788899999998876553333456788777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..++
T Consensus 122 ~l~~~ 126 (379)
T MTH00145 122 LLSMG 126 (379)
T ss_pred HHHHH
Confidence 54444
No 195
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=34.89 E-value=1.6e+02 Score=30.54 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=40.4
Q ss_pred CCChhhhhHHHHhhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccc
Q 007434 10 QWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMH 79 (604)
Q Consensus 10 ~~~~~~~~~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~ 79 (604)
.|..-+.+|...++|-.+-++-...+=..+-+++.++++ |+++-.++...|-++|....++.+..-+.+
T Consensus 154 ~w~~v~~iv~swfiSpilsg~~s~ilf~~v~~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs~ 222 (512)
T KOG2493|consen 154 VWMEVIKIVASWFISPILSGIISAILFFLVDHSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVYDGSK 222 (512)
T ss_pred eehhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC-chhhchhhcchhhhhhhhheeeeEEecCcc
Confidence 564333344444455544433322222333444556666 899888889998888888887766544444
No 196
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=34.75 E-value=1.8e+02 Score=24.29 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=28.8
Q ss_pred hHHHHhhhhHHHHHHHhhHhHHHHHHHHhcCCCCch
Q 007434 17 LMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYR 52 (604)
Q Consensus 17 ~~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~ 52 (604)
.|..||.+...++++-...-+.+++++.|++..+..
T Consensus 31 ~M~Ch~tg~a~~~ig~vi~~~~li~~~~k~~~~~~g 66 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAVIAVLSLIMLFVKNKKARIG 66 (124)
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 489999999999999888888888888766654433
No 197
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=33.99 E-value=3e+02 Score=23.58 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC-------CCCcccccC-CChhHHHHhhcCCeEEeCC
Q 007434 168 VELGRTLALEECALWMPTRTGLELQLSYTLRQQ-------NPVGYTVPI-QLPVINQVFSSNHAVKISP 228 (604)
Q Consensus 168 ~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~~~~~~~i~~ 228 (604)
+.+.++..+| ..||.+..++....+++.-... +..|...+. ..+.+..++++|.+..-..
T Consensus 28 ql~ADLs~aD-l~l~v~~~~~~~vvvA~~rP~t~~t~y~~dvVG~~~~~~~ep~v~~a~~tg~~~~~~~ 95 (145)
T PF12282_consen 28 QLLADLSFAD-LFLWVPTKDGNAVVVAQARPSTAPTLYPDDVVGKVALRENEPAVDRALETGRPVRGGR 95 (145)
T ss_dssp HHHHHHHTSE-EEEEEE-TTS-EEEEEEE--SSS--S--S--TT-EE-GGGSHHHHHHHH---------
T ss_pred HHHHHhhcCC-EEEEEEcCCCCEEEEEEeCCCCCCCCCCCCCCCCccCccccHHHHHHHHhCCceecCC
Confidence 3445555555 7889998887743333332221 123333333 5688999999998876443
No 198
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.84 E-value=1.4e+02 Score=25.43 Aligned_cols=19 Identities=32% Similarity=0.252 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007434 90 AKVLTAVVSCATALMLVHI 108 (604)
Q Consensus 90 ~k~~ta~vs~~tai~l~~l 108 (604)
.-.+.++.|+..+.+.+++
T Consensus 50 q~v~f~~lsv~~~~l~rr~ 68 (140)
T COG1585 50 QLVLFAILSVLLALLGRRF 68 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777776
No 199
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=33.77 E-value=4.6e+02 Score=25.56 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=13.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHh
Q 007434 146 VRMLTHEIRSTLDRHTILKTTLVEL 170 (604)
Q Consensus 146 l~~~~~~l~~~~~~~~il~~~~~~~ 170 (604)
..++.+.+.+..|.++++.-.-+++
T Consensus 119 ~~r~~~~~~~~~d~~ell~L~e~~v 143 (289)
T TIGR01620 119 RAAWKETENEVIDGPELIELAEREV 143 (289)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHh
Confidence 3344455555666666665555544
No 200
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=33.76 E-value=4.6e+02 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=11.4
Q ss_pred HhhHhHHHHHHHHhcCCCCchHHH
Q 007434 32 YFSIPLELIYFVKKSAVFPYRWVL 55 (604)
Q Consensus 32 y~~ip~~l~y~~~~~~~~~~~~~~ 55 (604)
-..+.+.+.|..|..+....+|+.
T Consensus 19 ~LIV~illa~L~k~~~~~~~~~V~ 42 (283)
T TIGR00145 19 ALVVSVLLSYLKRAQRTRLRGWVW 42 (283)
T ss_pred HHHHHHHHHHHHhcCccchhhHHH
Confidence 445555666655443322344444
No 201
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.91 E-value=57 Score=31.11 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007434 310 AAILEESMRARDLLMQQNIALDS 332 (604)
Q Consensus 310 a~l~~~~~~~~~~l~~~~~~l~~ 332 (604)
++..+++++.+++|++..++|++
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdR 85 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDR 85 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444433
No 202
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.25 E-value=5e+02 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007434 378 QRLMVETILKSSNLLATLINDVLDLSR 404 (604)
Q Consensus 378 ~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (604)
.+.++..++..++.+.--+.+++.+..
T Consensus 199 RQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 199 RQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355677777777777777777777665
No 203
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.96 E-value=7.6e+02 Score=29.15 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 007434 338 ETAIRARNDFLAVMNHEMRTP 358 (604)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~p 358 (604)
++.+++...++..+...+.++
T Consensus 1467 ~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1467 EESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 334444445555554444443
No 204
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.92 E-value=4.5e+02 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 293 LELVEVVADQVAVALSHAAILEESMRAR 320 (604)
Q Consensus 293 ~~ll~~la~~~a~al~~a~l~~~~~~~~ 320 (604)
-.+++.+...+-+|+++|+..++..+.+
T Consensus 502 eTll~niq~llkva~dnar~qekQiq~E 529 (641)
T KOG3915|consen 502 ETLLTNIQGLLKVAIDNARAQEKQIQLE 529 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888889999998877655443
No 205
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.53 E-value=3.4e+02 Score=23.31 Aligned_cols=12 Identities=25% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHHhhHHhcccc
Q 007434 68 THLINLWTFNMH 79 (604)
Q Consensus 68 thl~~i~~~~~~ 79 (604)
.-+..+.++++|
T Consensus 92 Q~~~G~~~f~~P 103 (143)
T cd08763 92 QWLIGFSFFLFP 103 (143)
T ss_pred HHHHHHHHHHcC
Confidence 334444455555
No 206
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=31.05 E-value=53 Score=30.11 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred ceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCc
Q 007434 452 YAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISP 524 (604)
Q Consensus 452 ~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~ 524 (604)
+..+||.+-.-+-.+.++|+..+.. .+-.-.+...++ -+++|.-.|.|||.
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG----------------------k~iSvmg~GmGipS 69 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG----------------------KKISVMGHGMGIPS 69 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC----------------------cEEEEEEecCCCcc
Confidence 4567888999999999999999874 221222222222 36889999999875
No 207
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.05 E-value=2.1e+02 Score=21.33 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 007434 136 IRTQEET 142 (604)
Q Consensus 136 ~~~~~~~ 142 (604)
+++-++|
T Consensus 51 A~rm~~R 57 (75)
T PRK09458 51 AERMRER 57 (75)
T ss_pred HHHHHHH
Confidence 3333333
No 208
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=30.99 E-value=4.6e+02 Score=24.75 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 007434 22 YISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCAT 101 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~t 101 (604)
...-+.|.++|+.++++.+....+ .-|.|+-..+-..++..|..+++.+-.+..+. |+. .+-..|.+|..--
T Consensus 16 ~~~~~Pi~lg~ip~Gl~fG~~a~~---~G~s~~e~~lmS~~iyAGasQfv~i~L~~~~~-~~l----~i~lttflVN~RH 87 (238)
T COG1296 16 LKASLPILLGYLPIGLAFGLLAVA---LGFSPLEAILMSLLIYAGASQFVAIGLLAAGA-PWL----AIALTTFLVNSRH 87 (238)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHccHHHHHHHHHHHcCC-cHH----HHHHHHHHHHHHH
Confidence 456678888998888888876655 34666666666677799999999886654443 221 1234556666666
Q ss_pred HHHHHHhhh
Q 007434 102 ALMLVHIIP 110 (604)
Q Consensus 102 ai~l~~llp 110 (604)
.+.-..+.|
T Consensus 88 ilyg~sl~~ 96 (238)
T COG1296 88 ILYGASLAP 96 (238)
T ss_pred HHHHHHHHH
Confidence 665555544
No 209
>COG4325 Predicted membrane protein [Function unknown]
Probab=30.16 E-value=6e+02 Score=25.79 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHH------------hcCCCCchHHHHHHHH-HHHHhhhHH
Q 007434 22 YISDFFIALAYFSIPLELIYFVK------------KSAVFPYRWVLVQFGA-FIVLCGATH 69 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~------------~~~~~~~~~~~~lf~~-fi~~cg~th 69 (604)
+++...|+...|+..++++-|-. -.+|.+.+-++..|.+ |+...+..|
T Consensus 85 vvAaSmisVtg~~fSItvvalqlaSsqfsPRll~~fmrd~~nqvvLa~FlctFvysl~vlr 145 (464)
T COG4325 85 VVAASMISVTGIVFSITVVALQLASSQFSPRLLRTFLRDVPNQVVLAIFLCTFVYSLGVLR 145 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 46666777777666666665531 1235566666654444 544444443
No 210
>COG2311 Predicted membrane protein [Function unknown]
Probab=29.88 E-value=5.9e+02 Score=26.13 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=32.6
Q ss_pred hhhhHHH-----HHHHhhHhHHHHHHHHh--cCCCCchHHHHHHHHHHHHhhhHHHhhHH
Q 007434 22 YISDFFI-----ALAYFSIPLELIYFVKK--SAVFPYRWVLVQFGAFIVLCGATHLINLW 74 (604)
Q Consensus 22 ~~sd~~i-----a~ay~~ip~~l~y~~~~--~~~~~~~~~~~lf~~fi~~cg~thl~~i~ 74 (604)
++.|++| -+..|..+.....+.++ +|..++.-.++.=-.++++.|..|.+.+|
T Consensus 59 ~~v~~f~~~KF~~lFs~LFG~G~~~~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW 118 (394)
T COG2311 59 ALVDLFAQGKFLTLFSFLFGVGLAMMLRRAARKGRRWVALYARRLLLLLLLGLIHALFIW 118 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555544 34445555555555555 34556666666666778899999998554
No 211
>PF13974 YebO: YebO-like protein
Probab=29.79 E-value=2.5e+02 Score=21.27 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.3
Q ss_pred HHHHHh
Q 007434 103 LMLVHI 108 (604)
Q Consensus 103 i~l~~l 108 (604)
+.+|-+
T Consensus 12 livWFF 17 (80)
T PF13974_consen 12 LIVWFF 17 (80)
T ss_pred HHHHHH
Confidence 333333
No 212
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=29.77 E-value=1.8e+02 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHhcCC
Q 007434 22 YISDFFIALAYFSIPLELIYFVKKSAV 48 (604)
Q Consensus 22 ~~sd~~ia~ay~~ip~~l~y~~~~~~~ 48 (604)
--||..++.+.-++...++|+.-+...
T Consensus 21 R~sDy~~~a~~ta~~p~~~~~~~~~~~ 47 (86)
T PF10785_consen 21 RPSDYAIWAGATAASPPLGYYMERSAP 47 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 379999999998888888888755443
No 213
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=29.52 E-value=2.6e+02 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred hhhHHHHH--HHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhh
Q 007434 23 ISDFFIAL--AYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLIN 72 (604)
Q Consensus 23 ~sd~~ia~--ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~ 72 (604)
..|..+.. +.+.+-+++.|+.|+ |+..+|..++.+.|..-.+.
T Consensus 195 ~~d~~~l~~l~~~l~vivL~~~fr~-------~~~~llpL~~~l~sv~~tlG 239 (727)
T COG1033 195 QKDMVVLLALAVILMVIVLYYVFRS-------VRRALLPLIIVLVSVLWTLG 239 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHH
Confidence 45555544 444455555555543 33445777766666554444
No 214
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.01 E-value=2.8e+02 Score=21.66 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCCchHHHH
Q 007434 39 LIYFVKKSAVFPYRWVLV 56 (604)
Q Consensus 39 l~y~~~~~~~~~~~~~~~ 56 (604)
++..++|-+.+|.+|+++
T Consensus 21 lVq~IkkT~~v~~K~iPl 38 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPL 38 (93)
T ss_pred HHHHHHHhccCCcchhhH
Confidence 466678877789999994
No 215
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.95 E-value=6.4e+02 Score=27.84 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 291 HELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETA 340 (604)
Q Consensus 291 ~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 340 (604)
.+-++-+-++...+.-.......+..++++.++++.+.+|..++++++..
T Consensus 140 veael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 140 VEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555666777777788888888888887766543
No 216
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=28.76 E-value=4e+02 Score=23.29 Aligned_cols=47 Identities=13% Similarity=-0.066 Sum_probs=20.2
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHH
Q 007434 28 IALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLW 74 (604)
Q Consensus 28 ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~ 74 (604)
..++-...++..+++.++.+....++..+.+....+++...+.+..+
T Consensus 76 ~~l~~~l~gl~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (172)
T PF12822_consen 76 FTLPAALFGLIAGLLYKKLKKKSKKRIIIAIIIAGVLGTLVNTLLNL 122 (172)
T ss_dssp HHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555665555544444333333333355555444333
No 217
>COG4377 Predicted membrane protein [Function unknown]
Probab=28.48 E-value=1.2e+02 Score=27.42 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLC 65 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~c 65 (604)
|..|.++ .|++...+|+..+++.+|+-+...+.+++=..+|.++.
T Consensus 7 ~~~hai~---~aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~ 51 (258)
T COG4377 7 MTIHAII---TAIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFS 51 (258)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 3455443 36777788888888887776666665554444454443
No 218
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.34 E-value=1.3e+02 Score=23.91 Aligned_cols=21 Identities=24% Similarity=-0.067 Sum_probs=12.5
Q ss_pred HHhhHhHHHHHHHHhcCCCCc
Q 007434 31 AYFSIPLELIYFVKKSAVFPY 51 (604)
Q Consensus 31 ay~~ip~~l~y~~~~~~~~~~ 51 (604)
.++.+|+++++|+-+.=|-.|
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~ 70 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHY 70 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777755444333
No 219
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=27.94 E-value=4.4e+02 Score=23.59 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007434 59 GAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHI 108 (604)
Q Consensus 59 ~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~l 108 (604)
+++.++++-+-++.-+|+|. |.|+.. =|+|-++..+++++...+
T Consensus 97 ~gl~~l~~q~~~l~rLTf~e--~sWDvM----EPVTYfv~~~~~i~~y~y 140 (180)
T PF04678_consen 97 GGLALLVVQFGILARLTFWE--YSWDVM----EPVTYFVGYGTSILGYAY 140 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccchh----hhHHHHHhHHHHHHHHHH
Confidence 33444566666666678885 456654 566666666666655444
No 220
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.81 E-value=1.8e+02 Score=27.36 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=45.3
Q ss_pred ceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 272 RYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARR 335 (604)
Q Consensus 272 ~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~ 335 (604)
+....+++......+.-...-..+++.+...+...+....+.++.+..++++++..++++.+++
T Consensus 169 ~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~ 232 (244)
T COG1938 169 GIPALVLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEE 232 (244)
T ss_pred CCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666556667888888888888888888888877777777776555555443
No 221
>PF13321 DUF4084: Domain of unknown function (DUF4084)
Probab=27.71 E-value=1.5e+02 Score=27.34 Aligned_cols=58 Identities=26% Similarity=0.376 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhhHhHHHHHHH---HhcCCCCchHHHHHHHH-HHHHhhhHHHhhHHhcccch
Q 007434 23 ISDFFIALAYFSIPLELIYFV---KKSAVFPYRWVLVQFGA-FIVLCGATHLINLWTFNMHS 80 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~---~~~~~~~~~~~~~lf~~-fi~~cg~thl~~i~~~~~~~ 80 (604)
.+|..|-++||.--..+.|-| .+|-....+.+.+..+. .++..|..|+.....--+++
T Consensus 160 ~~~~~i~i~Y~I~~~L~i~~VISLY~~~~~s~~~~aLII~~~I~~V~~~~HL~~~~~~~~~S 221 (304)
T PF13321_consen 160 TSDTWILIGYFIAQSLVIYAVISLYRRESYSSSRIALIIGFTIILVYGYIHLFQLNSGTKSS 221 (304)
T ss_pred ccceeeeehhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHhcCCccc
Confidence 577888889988877777776 33334455555544444 55677899999876655664
No 222
>COG4420 Predicted membrane protein [Function unknown]
Probab=27.63 E-value=4.5e+02 Score=23.59 Aligned_cols=7 Identities=0% Similarity=0.126 Sum_probs=3.7
Q ss_pred hhHHHHH
Q 007434 80 SRTVAIV 86 (604)
Q Consensus 80 ~~~~~~~ 86 (604)
.||.-++
T Consensus 86 pyPFi~L 92 (191)
T COG4420 86 PYPFILL 92 (191)
T ss_pred CccHHHH
Confidence 4666544
No 223
>COG2119 Predicted membrane protein [Function unknown]
Probab=27.63 E-value=3e+02 Score=24.70 Aligned_cols=58 Identities=24% Similarity=0.159 Sum_probs=26.3
Q ss_pred hhhHHHHHH-----HhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHh-ccc----chhHHHHHHHH
Q 007434 23 ISDFFIALA-----YFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWT-FNM----HSRTVAIVMTT 89 (604)
Q Consensus 23 ~sd~~ia~a-----y~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~-~~~----~~~~~~~~~~~ 89 (604)
+|=..|++| +|.|-..+.+ |+ +|+.+++|.++ +--..|.+.++. .|. |..+..|++++
T Consensus 6 ~s~~~v~laEiGDKT~lia~llA~--r~------~~~~v~~g~~~-a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~ 73 (190)
T COG2119 6 VSLLMVALAEIGDKTQLIAMLLAM--RY------RRWPVFAGIAI-ALFAMHALAVLVGHAAASLLPERPLAWASGV 73 (190)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH--hc------CCchhHHHHHH-HHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 444555555 5555544443 32 23344455543 223334444332 333 34466666544
No 224
>MTH00033 CYTB cytochrome b; Provisional
Probab=27.23 E-value=3.9e+02 Score=27.35 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+-.|++|-.+-|.-|-.-+-....-+.. .+|.++.|.+ ...+.+.++|-..|+.-.+.+...-....|++|++..
T Consensus 38 ~~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gsY~r~~~W~~Gv~ll 117 (383)
T MTH00033 38 LGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIF 117 (383)
T ss_pred HHHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccChHHHHHhHHHH
Confidence 3456677776666666544333322322 4577877766 5667788899999998776543323455777777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..+.
T Consensus 118 ~l~m~ 122 (383)
T MTH00033 118 FIMML 122 (383)
T ss_pred HHHHH
Confidence 54444
No 225
>MTH00100 CYTB cytochrome b; Provisional
Probab=26.98 E-value=4.9e+02 Score=26.60 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=48.0
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+-.|++|-.+.+.-|-..+-....-+.. .+|.++.|.+ ...+.+.++|-..|++=.+.+...-.+..|++|+...
T Consensus 41 ~~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~~~~~W~~G~~l~ 120 (379)
T MTH00100 41 LILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILL 120 (379)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH
Confidence 3445666666666665544333333332 4678887766 5557788888899998775542222345688777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..++
T Consensus 121 ~l~~~ 125 (379)
T MTH00100 121 FTVMA 125 (379)
T ss_pred HHHHH
Confidence 54444
No 226
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=26.97 E-value=4.7e+02 Score=25.13 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 007434 51 YRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVK 116 (604)
Q Consensus 51 ~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~llp~~l~l~ 116 (604)
-+|+..+++.-++++...-++ ++.+.... +...++..+..+.+++++|-+-+-.|.+|
T Consensus 172 k~fi~~~~~~gi~~~~l~~~~-~~~~g~~~-------~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lP 229 (267)
T PF07672_consen 172 KPFIHFIISLGIVFFVLSIVV-VYFVGPGN-------AAGFAFFYIFGFLAGFFLWGIQGVILNLP 229 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhCcch-------HHHHHHHHHHHHHHHHHHHhhhHHHhcCh
Confidence 344444444444455555555 44443322 23455577778888999999877777776
No 227
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.89 E-value=3.5e+02 Score=22.08 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 007434 127 AELDREMGL 135 (604)
Q Consensus 127 ~~l~~~~~~ 135 (604)
++++++.+.
T Consensus 109 ~~l~~d~~~ 117 (121)
T PF07332_consen 109 AELKEDIAA 117 (121)
T ss_pred HHHHHHHHH
Confidence 344444433
No 228
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=26.70 E-value=22 Score=34.66 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=6.7
Q ss_pred CcCCCCCCC
Q 007434 4 CNCIEPQWP 12 (604)
Q Consensus 4 ~~~~~~~~~ 12 (604)
||||||.|+
T Consensus 39 cnCdDp~~S 47 (336)
T PF13651_consen 39 CNCDDPRES 47 (336)
T ss_pred EeCCCcchh
Confidence 888887664
No 229
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=26.59 E-value=3.7e+02 Score=22.20 Aligned_cols=51 Identities=25% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccch
Q 007434 28 IALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHS 80 (604)
Q Consensus 28 ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~ 80 (604)
.+-.|+.+++.+++..++.+. .+..+.+.+.++...|...+++++.-..|+
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~ 100 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPS 100 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 355677788877777765332 333445566677788999999988766654
No 230
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=26.50 E-value=1.1e+02 Score=19.65 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHhhhHHHhhH
Q 007434 50 PYRWVLVQFGAFIVLCGATHLINL 73 (604)
Q Consensus 50 ~~~~~~~lf~~fi~~cg~thl~~i 73 (604)
|+.+...++++|.+++-..|++..
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~ 33 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVL 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888888888887633
No 231
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=26.30 E-value=5.6e+02 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHHHhhhHHHhhHHhcccc
Q 007434 49 FPYRWVLVQFGAFIVLCGATHLINLWTFNMH 79 (604)
Q Consensus 49 ~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~ 79 (604)
.|++.++.++++|.=+.-....-.+|..+.|
T Consensus 27 ~p~liIi~i~~aFfWLvSLLlss~iW~i~~p 57 (238)
T PF06105_consen 27 DPQLIIILIAGAFFWLVSLLLSSLIWFIVVP 57 (238)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3777788888887655555555556666555
No 232
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=26.11 E-value=6.8e+02 Score=25.09 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=42.9
Q ss_pred hhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchh
Q 007434 212 PVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVH 291 (604)
Q Consensus 212 ~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~ 291 (604)
.-...++.+++.+.++..... ...|....+..| +...+.++||+.+.... ++
T Consensus 46 EGAllal~e~R~V~Id~~~a~---------~l~gVkpGINLP--------------i~~~~~vVGViGITGeP-----~~ 97 (376)
T COG3835 46 EGALLALKERRVVEIDQAVAR---------KLKGVKPGINLP--------------IRFDGKVVGVIGITGEP-----EE 97 (376)
T ss_pred hHHHHHHhcCcEEEeeHHHHH---------HhcCCCCCCCcc--------------eEecCceEEEEeccCCh-----HH
Confidence 345567788888887664321 111122223334 56667778888765442 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 292 ELELVEVVADQVAVALSHAAILEESMRARDL 322 (604)
Q Consensus 292 e~~ll~~la~~~a~al~~a~l~~~~~~~~~~ 322 (604)
-..+.+.+.-.+-..++.+++.++.+..+..
T Consensus 98 Vr~y~ELVrm~AElliEQ~~~~Eq~qw~~r~ 128 (376)
T COG3835 98 VRKYGELVRMTAELLIEQARLLEQLQWDRRY 128 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333444444556666666665554443
No 233
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=25.84 E-value=2.1e+02 Score=23.48 Aligned_cols=62 Identities=8% Similarity=0.134 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 46 SAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMH-------SRTVAIVMTTAKVLTAVVSCATALMLVH 107 (604)
Q Consensus 46 ~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~-------~~~~~~~~~~~k~~ta~vs~~tai~l~~ 107 (604)
....+.+|..+.++.|+++.|++-++.-...+.. ..+..++.|++-.+=-+-.+..+...|+
T Consensus 34 ~P~~k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~r 102 (115)
T PF05915_consen 34 HPKVKIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWR 102 (115)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHc
No 234
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.81 E-value=3e+02 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 323 LMQQNIALDSARREAETAIRARNDFLAVMN 352 (604)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~ 352 (604)
|+++|.+|+..-.++++..+.+++++..+-
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544443
No 235
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=4.3e+02 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=12.9
Q ss_pred hhHHHHHHHhhHhHHHHHHHHhc
Q 007434 24 SDFFIALAYFSIPLELIYFVKKS 46 (604)
Q Consensus 24 sd~~ia~ay~~ip~~l~y~~~~~ 46 (604)
.|++.|+-||.+..-..|.-+.|
T Consensus 163 ~~f~Laii~fllftPcsyVcWyR 185 (313)
T KOG3088|consen 163 TIFGLAIIWFLLFTPCSYVCWYR 185 (313)
T ss_pred hhhHHHHHHHHHhCCceeeEeeh
Confidence 45556666666665555554433
No 236
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.16 E-value=3e+02 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 007434 91 KVLTAVVSCATALMLV 106 (604)
Q Consensus 91 k~~ta~vs~~tai~l~ 106 (604)
-++++++.+...+.++
T Consensus 8 ~Pliif~ifVap~wl~ 23 (75)
T TIGR02976 8 IPLIIFVIFVAPLWLI 23 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444333333333
No 237
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=25.14 E-value=65 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccc
Q 007434 94 TAVVSCATALMLVHIIPDLLSV 115 (604)
Q Consensus 94 ta~vs~~tai~l~~llp~~l~l 115 (604)
..+++..+|++..+++|.--++
T Consensus 163 lI~~~aLmAl~fik~LPeWTtW 184 (406)
T KOG2736|consen 163 LIMISALMALFFIKYLPEWTTW 184 (406)
T ss_pred HHHHHHHHHHHHHHHCccHHHH
Confidence 3446777888888887754443
No 238
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.01 E-value=3.2e+02 Score=20.98 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 007434 128 ELDREMGL 135 (604)
Q Consensus 128 ~l~~~~~~ 135 (604)
.++++.+.
T Consensus 37 ~l~~~~~~ 44 (90)
T PF06103_consen 37 TLQEQVDP 44 (90)
T ss_pred HHHHhHHH
Confidence 34444333
No 239
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=24.86 E-value=6.7e+02 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=14.2
Q ss_pred HhHHHHHHHH-hcCCCCchHHHHHHHHHHHHhhh
Q 007434 35 IPLELIYFVK-KSAVFPYRWVLVQFGAFIVLCGA 67 (604)
Q Consensus 35 ip~~l~y~~~-~~~~~~~~~~~~lf~~fi~~cg~ 67 (604)
..++++|.+- .++..+.+|++ .|+++-+++.
T Consensus 202 ~~f~~ly~~lP~~~~~~~~~~~--~Ga~~aai~~ 233 (303)
T COG1295 202 LGFFLLYRFLPNVRVLKWRDVL--PGALLAAILF 233 (303)
T ss_pred HHHHHHHHHcCCccccchHHhh--hhHHHHHHHH
Confidence 4555555543 33244444333 4555444443
No 240
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=24.58 E-value=5.9e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 007434 118 RELFLKNKAAELDREMGLIRTQE 140 (604)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~ 140 (604)
.+.+..+.+.++|+|+.....+.
T Consensus 162 ~~~L~~~LNnrlE~eV~~i~~~~ 184 (237)
T PF13748_consen 162 NYRLYRRLNNRLEKEVDIIERRK 184 (237)
T ss_pred HHHHHHHHhHHHHHHccHhhcCC
Confidence 45667778888888877665543
No 241
>PF14979 TMEM52: Transmembrane 52
Probab=24.57 E-value=65 Score=27.27 Aligned_cols=16 Identities=38% Similarity=1.130 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhH
Q 007434 53 WVLVQFGAFIVLCGAT 68 (604)
Q Consensus 53 ~~~~lf~~fi~~cg~t 68 (604)
|++++.+...++||.|
T Consensus 23 wLill~~~llLLCG~t 38 (154)
T PF14979_consen 23 WLILLIGFLLLLCGLT 38 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555667765
No 242
>MTH00053 CYTB cytochrome b; Provisional
Probab=24.56 E-value=4.6e+02 Score=26.79 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+..|++|-.+-+.-|-.-+-....-+.. .+|.++.|.+ ...+.++++|-..|+.=.+.+...-....|.+|+...
T Consensus 42 ~~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~~~W~~Gv~l~ 121 (381)
T MTH00053 42 LIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIF 121 (381)
T ss_pred HHHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCchHHHhhHHHH
Confidence 3445666666665555544333323322 4678887776 5566788899999998775442222355677777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..++
T Consensus 122 ~l~m~ 126 (381)
T MTH00053 122 LLMIL 126 (381)
T ss_pred HHHHH
Confidence 54443
No 243
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=24.56 E-value=1.2e+02 Score=30.05 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=15.3
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhc
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKS 46 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~ 46 (604)
++|+++++.-+.+...+++.+++.
T Consensus 25 vgdi~~~~~il~ll~~~~~~~~~~ 48 (318)
T PF12725_consen 25 VGDILYYLLILFLLYYLIRLIRKI 48 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776666666666655543
No 244
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=24.50 E-value=3.4e+02 Score=21.14 Aligned_cols=32 Identities=19% Similarity=0.631 Sum_probs=22.8
Q ss_pred hHHHHHHHhhHhHHHHHHHH----hcCCCCchHHHH
Q 007434 25 DFFIALAYFSIPLELIYFVK----KSAVFPYRWVLV 56 (604)
Q Consensus 25 d~~ia~ay~~ip~~l~y~~~----~~~~~~~~~~~~ 56 (604)
-++.+++.|..+....||.. ||=-+|++|-++
T Consensus 27 Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~L 62 (94)
T PF15110_consen 27 AFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNIL 62 (94)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhH
Confidence 46778999999999998874 333567777764
No 245
>COG3619 Predicted membrane protein [Function unknown]
Probab=24.38 E-value=4e+02 Score=24.93 Aligned_cols=56 Identities=5% Similarity=0.005 Sum_probs=36.2
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccc
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMH 79 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~ 79 (604)
.=+.++.+..|..+..+..+++|+... .....+.+...+++|+..-.+..+....|
T Consensus 58 a~~~~~pii~Fv~Gv~~~~~~~r~~~~-~~~~~l~~~~~ll~~~v~~~~~~~p~~~~ 113 (226)
T COG3619 58 AVLLLLPILAFVLGVAAAELISRRATR-SFIPVLLLVSLLLALIALLALGFIPESSP 113 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 345677888888898888888776554 33344555556667777766654444444
No 246
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=24.33 E-value=5.2e+02 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=9.2
Q ss_pred HHHHhhHhHHHHHHHHhcC
Q 007434 29 ALAYFSIPLELIYFVKKSA 47 (604)
Q Consensus 29 a~ay~~ip~~l~y~~~~~~ 47 (604)
..+.+.=|+..+.|..+.+
T Consensus 31 ~Sal~lKPlCCl~f~~Yy~ 49 (179)
T PF04544_consen 31 ISALVLKPLCCLIFLWYYR 49 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544433
No 247
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=23.68 E-value=2.3e+02 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 007434 91 KVLTAVVSCATALM 104 (604)
Q Consensus 91 k~~ta~vs~~tai~ 104 (604)
.++|+++.++..+.
T Consensus 11 Yg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 11 YGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455444433333
No 248
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=7.9e+02 Score=24.98 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHHHHHhh
Q 007434 383 ETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIK 431 (604)
Q Consensus 383 ~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 431 (604)
+.+.+.++.++.++.++-.+.+.+....-...+.-|+.++++.-+..++
T Consensus 157 ~~LL~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~dlt~lvqrri~~LQ 205 (580)
T KOG3705|consen 157 KILLETAEHMRSLMGDSAQLEQLDGSEEWRFKEATDLTQLVQRRIEKLQ 205 (580)
T ss_pred HHHHhhHHHHHHHHhHHHHHHhccCcHHHHHhHHhHHHHHHHHHHHHhc
Confidence 3455667788888888888877765555555567788888888777765
No 249
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=23.45 E-value=1.2e+02 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=8.8
Q ss_pred CCCCcCCC--CCCChh
Q 007434 1 MESCNCIE--PQWPAD 14 (604)
Q Consensus 1 ~~~~~~~~--~~~~~~ 14 (604)
|.-|.||+ +.+.-+
T Consensus 1 m~c~rc~~~p~d~~~~ 16 (61)
T PF06692_consen 1 MACCRCDSAPGDYSGP 16 (61)
T ss_pred CcccccCCCCccchhH
Confidence 45578998 355543
No 250
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=23.42 E-value=4.4e+02 Score=21.98 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred hHHHHhhhhHHHHHHHhhHhHHHHHHHHhcCC-CCchHHHHHHHHHHHHhhhHHHhh-HHhcccc---------hhHHHH
Q 007434 17 LMKYQYISDFFIALAYFSIPLELIYFVKKSAV-FPYRWVLVQFGAFIVLCGATHLIN-LWTFNMH---------SRTVAI 85 (604)
Q Consensus 17 ~~~~~~~sd~~ia~ay~~ip~~l~y~~~~~~~-~~~~~~~~lf~~fi~~cg~thl~~-i~~~~~~---------~~~~~~ 85 (604)
....|.+-.. +++....+++.++|..+..+. -.++-....+|...+++-..+.+. ++..+.| ...+..
T Consensus 34 ~~~~H~~lq~-l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~ 112 (137)
T PF03188_consen 34 WFRIHWILQV-LALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHR 112 (137)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHH
Confidence 4567776665 688888888888876654432 233444444555444444444332 2222211 234566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007434 86 VMTTAKVLTAVVSCATAL 103 (604)
Q Consensus 86 ~~~~~k~~ta~vs~~tai 103 (604)
..|..-.+.+++++.+++
T Consensus 113 ~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 113 WLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766665
No 251
>PF06899 WzyE: WzyE protein; InterPro: IPR010691 This family consists of several WzyE proteins, which appear to be specific to Enterobacteria. Members of this family are described as putative ECA polymerases this has been found to be incorrect []. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=23.28 E-value=2.7e+02 Score=28.35 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHH
Q 007434 26 FFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATH 69 (604)
Q Consensus 26 ~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~th 69 (604)
.+.-..||.||..++.+.-+. -+..|++ |-...++||..+
T Consensus 156 AlkrffYffiPAmLvvyfL~~--~k~~wi~--fLi~~v~FGllt 195 (448)
T PF06899_consen 156 ALKRFFYFFIPAMLVVYFLKQ--TKRSWIL--FLISTVAFGLLT 195 (448)
T ss_pred HHHHHHHHHHHHHHHhheecc--chHHHHH--HHHHHHHHhhhe
Confidence 344567999999988776543 2344666 444445777665
No 252
>PRK09695 glycolate transporter; Provisional
Probab=23.24 E-value=2.8e+02 Score=30.04 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=45.9
Q ss_pred hhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 007434 24 SDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATAL 103 (604)
Q Consensus 24 sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai 103 (604)
+-....+..+.+|+.+++++-+.|..+-.|-+.+++++ .++..+.+..+... |. +...+.+++++...+
T Consensus 195 ~~~~l~~~~~~ipf~lv~~~~g~k~~~~~~p~~L~~g~--~f~~~~~~~a~~~g-pe--------L~~ii~~lv~l~~~~ 263 (560)
T PRK09695 195 AGRQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGG--SFAVTQFFTSNYIG-PE--------LPDITSALVSIVSLA 263 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcC-cc--------hHHHHHHHHHHHHHH
Confidence 34445556788999999888766777777888888887 77777766554332 21 223344445555555
Q ss_pred HHHH
Q 007434 104 MLVH 107 (604)
Q Consensus 104 ~l~~ 107 (604)
.+.+
T Consensus 264 l~~k 267 (560)
T PRK09695 264 LFLK 267 (560)
T ss_pred HHHH
Confidence 5555
No 253
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.48 E-value=6.3e+02 Score=23.42 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=3.9
Q ss_pred CHHHHHHHHH
Q 007434 158 DRHTILKTTL 167 (604)
Q Consensus 158 ~~~~il~~~~ 167 (604)
..|.++-...
T Consensus 170 ~~e~~l~N~~ 179 (214)
T cd08764 170 PAEGVLGNFI 179 (214)
T ss_pred ChhHHHHHHH
Confidence 3344333333
No 254
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.28 E-value=5.8e+02 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007434 82 TVAIVMTTAKVLTAVVSCATAL 103 (604)
Q Consensus 82 ~~~~~~~~~k~~ta~vs~~tai 103 (604)
+..+..|.+-.+.+++.+.+++
T Consensus 139 ~~H~~~G~~~~~l~~v~i~~G~ 160 (191)
T cd08760 139 WAHRWLGRAALILAIVNIFLGL 160 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 255
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.16 E-value=7.2e+02 Score=25.85 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhH
Q 007434 56 VQFGAFIVLCGAT 68 (604)
Q Consensus 56 ~lf~~fi~~cg~t 68 (604)
+++.+++++.|++
T Consensus 232 ~~~Pim~~~~g~~ 244 (429)
T PRK00247 232 ILAPIFPLSLGLT 244 (429)
T ss_pred HHhHHHHHHHHHh
Confidence 4455566565555
No 256
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.12 E-value=1e+03 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 291 HELELVEVVADQVAVALSHAAILEESMRARDLLMQQ 326 (604)
Q Consensus 291 ~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~ 326 (604)
..+.+|..+++.....-+....+++.+..++++.+.
T Consensus 145 ~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 180 (563)
T TIGR00634 145 EQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDR 180 (563)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778877774334444455555555555554443
No 257
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.93 E-value=4.2e+02 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=12.8
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHhhh
Q 007434 40 IYFVKKSAVFPYRWVLVQFGAFIVLCGA 67 (604)
Q Consensus 40 ~y~~~~~~~~~~~~~~~lf~~fi~~cg~ 67 (604)
.|=+.++.|-..-|+. +++|+.....
T Consensus 16 ~y~~trk~dp~l~~~m--l~a~l~~~~v 41 (224)
T PF13829_consen 16 AYKMTRKEDPKLPWLM--LGAFLGPIAV 41 (224)
T ss_pred HHHHHHHHCcchHHHH--HHHHHHHHHH
Confidence 3445555665555554 4555333333
No 258
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.92 E-value=1.1e+02 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=11.3
Q ss_pred hHHHHHHHhhHhHHHHHHHH
Q 007434 25 DFFIALAYFSIPLELIYFVK 44 (604)
Q Consensus 25 d~~ia~ay~~ip~~l~y~~~ 44 (604)
=..++.+|+.+--.++|+..
T Consensus 21 y~~l~~~YLlVvP~~l~~wm 40 (81)
T PF10716_consen 21 YAALAGLYLLVVPLILYFWM 40 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677665445555553
No 259
>MTH00086 CYTB cytochrome b; Provisional
Probab=21.86 E-value=6e+02 Score=25.68 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=47.6
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+-.|++|-.+-+.-|-.-+-....-+.. .+|.++.|.+ ..-+.+.++|-..|+.=.+.+...-.+..|++|+...
T Consensus 30 l~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~~~~~W~~Gv~l~ 109 (355)
T MTH00086 30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109 (355)
T ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccCCchHHHHhHHHH
Confidence 4456666666666665443222222322 4678877766 5557788899999988776543222355677777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..++
T Consensus 110 ~l~m~ 114 (355)
T MTH00086 110 LLVMM 114 (355)
T ss_pred HHHHH
Confidence 44433
No 260
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.81 E-value=1.1e+03 Score=28.12 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhHHHHhHHHHH
Q 007434 128 ELDREMGLIRTQEETGRHVRM 148 (604)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~l~~ 148 (604)
+.+++.+++++.+++.+.+.+
T Consensus 270 ~~r~~~~~l~~~e~r~~~l~e 290 (1092)
T PRK09776 270 AFRAERKHISESETRFRNAME 290 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555443
No 261
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.47 E-value=7.3e+02 Score=24.83 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 007434 122 LKNKAAELDREMGLIRTQEET 142 (604)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~ 142 (604)
+.+.+++|+++..+++.+..+
T Consensus 62 L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 62 LETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666554444
No 262
>COG4042 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=2.8e+02 Score=21.28 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=35.2
Q ss_pred hhHHHHhhhhHHHHHHHhhHhHHHHHH--HHhcCCCCchHHH-HHHHHHHHHhhhHHHhh
Q 007434 16 LLMKYQYISDFFIALAYFSIPLELIYF--VKKSAVFPYRWVL-VQFGAFIVLCGATHLIN 72 (604)
Q Consensus 16 ~~~~~~~~sd~~ia~ay~~ip~~l~y~--~~~~~~~~~~~~~-~lf~~fi~~cg~thl~~ 72 (604)
+|+..-+++-.++|+.+-.|-...+-. +.|-|-.+|.|-. ..|..-+++.|.|-+..
T Consensus 7 ~lv~V~~i~gylaA~i~svivalvLgLP~i~~ekP~R~Swe~SaiFPTPviAlG~tai~i 66 (104)
T COG4042 7 LLVRVMIIIGYLAALITSVIVALVLGLPIIPKEKPIRFSWETSAIFPTPVIALGITAIFI 66 (104)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhCCCCCCcccccccccccccccCccHHHhchHHHhH
Confidence 355665777777777655443222222 3455566788876 55777778888886553
No 263
>MTH00016 CYTB cytochrome b; Validated
Probab=21.22 E-value=5.2e+02 Score=26.39 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHhhhhHHHHHHHhhHhHHHHHHHH-hcCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHH
Q 007434 19 KYQYISDFFIALAYFSIPLELIYFVK-KSAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVL 93 (604)
Q Consensus 19 ~~~~~sd~~ia~ay~~ip~~l~y~~~-~~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ 93 (604)
-.|++|-.+-+.-|-..+-....-+. =.+|.++.|.+ ...+.+.++|-..|+.=.+.+...-.+..|.+|+...+
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~~~W~~Gv~l~~ 122 (378)
T MTH00016 43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122 (378)
T ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhHHHHH
Confidence 34556666666666554322222222 24577777766 55577888999999987765432223556777776554
Q ss_pred HHHH
Q 007434 94 TAVV 97 (604)
Q Consensus 94 ta~v 97 (604)
..++
T Consensus 123 l~m~ 126 (378)
T MTH00016 123 LTMA 126 (378)
T ss_pred HHHH
Confidence 4443
No 264
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=21.15 E-value=5.1e+02 Score=21.91 Aligned_cols=89 Identities=11% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCcccccccccc
Q 007434 161 TILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240 (604)
Q Consensus 161 ~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~ 240 (604)
++.+.+++.+.+.++.+ +-..|.++. ..+.+ .. ..+-..+.....+++++++..+......
T Consensus 4 ~~Aq~Iv~~~~~~i~~~---inimd~~G~--IIASt-d~-----~RIG~~HegA~~~i~~~~~~~i~~~~~~-------- 64 (135)
T PF05651_consen 4 ELAQKIVDEIMEIIGYN---INIMDENGI--IIAST-DP-----ERIGTFHEGAKEVIRTNKEIEITEEDAE-------- 64 (135)
T ss_pred HHHHHHHHHHHHHcCCC---EEEECCCcE--EEecC-Ch-----hhcCccCHHHHHHHHcCCcccccHhHHh--------
Confidence 34677788888887765 222233222 22211 11 1122345677788888877666543310
Q ss_pred ccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC
Q 007434 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD 283 (604)
Q Consensus 241 ~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~ 283 (604)
..+|....+..| +..++.++|++.+...
T Consensus 65 -~~~g~k~GinlP--------------I~~~g~~iGviGItG~ 92 (135)
T PF05651_consen 65 -QYPGVKPGINLP--------------IIFNGEVIGVIGITGE 92 (135)
T ss_pred -hccCCCcceeee--------------EEECCEEEEEEEEecC
Confidence 111333334445 6678888999888765
No 265
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=21.04 E-value=6.1e+02 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=18.4
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHhcC
Q 007434 23 ISDFFIALAYFSIPLELIYFVKKSA 47 (604)
Q Consensus 23 ~sd~~ia~ay~~ip~~l~y~~~~~~ 47 (604)
-.|....+.++.-+++..|.+++.+
T Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~~~~ 125 (194)
T PF07698_consen 101 GFDFEFFLYSLVSGIVAIFSVRRIR 125 (194)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888888888886544
No 266
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.04 E-value=3.5e+02 Score=20.01 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 293 LELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARN 345 (604)
Q Consensus 293 ~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 345 (604)
.+++..+-..+..|++...+.+ .-.++|.+.+..+...+..+...++...
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq---~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQ---MENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566777777777777554433 3344555555555555555554444433
No 267
>MTH00022 CYTB cytochrome b; Validated
Probab=20.99 E-value=3.3e+02 Score=27.81 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHhhhhHHHHHHHhhHhHHHHHHHHh-cCCCCchHHH----HHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHH
Q 007434 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVL----VQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (604)
Q Consensus 18 ~~~~~~sd~~ia~ay~~ip~~l~y~~~~-~~~~~~~~~~----~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~ 92 (604)
+-.|++|-.+-|.-|-.-+-....-+.. .+|.++.|.+ ..-+.++++|-..|+.-.+.+...-.+..|++|+...
T Consensus 40 ~~~qiiTG~~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~~~~~W~~Gv~l~ 119 (379)
T MTH00022 40 LVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119 (379)
T ss_pred HHHHHHHHHHHHhhhcCChhhHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhcHHHH
Confidence 3446677777776666554433333333 4688887776 5567788899999998776432211244677777655
Q ss_pred HHHHH
Q 007434 93 LTAVV 97 (604)
Q Consensus 93 ~ta~v 97 (604)
+..++
T Consensus 120 ~l~~~ 124 (379)
T MTH00022 120 LLTMA 124 (379)
T ss_pred HHHHH
Confidence 44433
No 268
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.78 E-value=2.3e+02 Score=25.77 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHH
Q 007434 38 ELIYFVKKSAVFPYRWVLVQFGAFIV 63 (604)
Q Consensus 38 ~l~y~~~~~~~~~~~~~~~lf~~fi~ 63 (604)
..+||..||.....+=..+-++++++
T Consensus 127 ~~iyfl~~K~~~~~rA~~~~~~~L~~ 152 (194)
T PF11833_consen 127 ACIYFLNRKERKLGRAFLWTLGGLVV 152 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34577766544444444444555543
No 269
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=1.1e+02 Score=29.89 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHhhHhHHHHHHHHh-cCCCCchHHHHHHHH-HHHHhhh
Q 007434 28 IALAYFSIPLELIYFVKK-SAVFPYRWVLVQFGA-FIVLCGA 67 (604)
Q Consensus 28 ia~ay~~ip~~l~y~~~~-~~~~~~~~~~~lf~~-fi~~cg~ 67 (604)
|.+|++.+-+..+.+.+| .-.+-++..+|++++ ||++|=+
T Consensus 183 iivaliva~i~~li~~k~~~l~fl~~r~~w~~lsl~i~f~~i 224 (331)
T KOG2603|consen 183 IIVALIVALIGGLIYKKRSNLTFLSNRTIWAVLSLFIVFFMI 224 (331)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHhheeeee
Confidence 456666665555444433 335566777777766 6666543
No 270
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.55 E-value=4.3e+02 Score=24.63 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.4
Q ss_pred chHHHHHHHH
Q 007434 51 YRWVLVQFGA 60 (604)
Q Consensus 51 ~~~~~~lf~~ 60 (604)
.+|.-.++++
T Consensus 107 ~~~~~~l~~~ 116 (224)
T PF03839_consen 107 SPLMQYLIGA 116 (224)
T ss_pred CcHHHHHHHH
Confidence 3444444444
Done!