Query 007434
Match_columns 604
No_of_seqs 378 out of 3620
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 01:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 2.1E-36 7.3E-41 292.7 30.3 231 337-588 13-250 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 2.6E-34 9.1E-39 279.9 29.4 234 330-591 26-261 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 100.0 3.5E-32 1.2E-36 278.4 23.0 228 339-589 116-376 (388)
4 3d36_A Sporulation kinase B; G 100.0 4.6E-32 1.6E-36 260.1 21.8 219 341-592 11-231 (244)
5 3jz3_A Sensor protein QSEC; he 100.0 5E-33 1.7E-37 262.8 12.4 216 345-589 3-220 (222)
6 3a0r_A Sensor protein; four he 100.0 1.6E-31 5.3E-36 270.9 22.0 215 342-588 130-347 (349)
7 2e0a_A Pyruvate dehydrogenase 100.0 7.7E-31 2.6E-35 268.6 25.2 217 347-587 98-351 (394)
8 4fpp_A Phosphotransferase; fou 100.0 9.1E-31 3.1E-35 250.2 22.8 195 347-584 49-246 (247)
9 2btz_A Pyruvate dehydrogenase 100.0 5.5E-31 1.9E-35 269.9 22.7 220 346-588 97-352 (394)
10 2q8g_A [pyruvate dehydrogenase 100.0 1.5E-30 5.2E-35 267.6 24.4 220 344-587 106-364 (407)
11 1y8o_A [pyruvate dehydrogenase 100.0 7.9E-30 2.7E-34 262.9 22.8 220 344-587 118-375 (419)
12 3ehh_A Sensor kinase (YOCF pro 99.9 4.4E-26 1.5E-30 214.3 22.1 190 342-587 26-217 (218)
13 1b3q_A Protein (chemotaxis pro 99.9 2.7E-26 9.2E-31 232.6 17.9 203 342-588 8-250 (379)
14 1id0_A PHOQ histidine kinase; 99.9 1.3E-24 4.3E-29 191.8 18.9 147 415-589 2-148 (152)
15 1ysr_A Sensor-type histidine k 99.9 4.6E-24 1.6E-28 187.7 18.0 146 413-586 4-149 (150)
16 1bxd_A ENVZ(290-450), protein 99.9 8.3E-24 2.8E-28 188.4 17.9 150 411-589 4-153 (161)
17 3a0y_A Sensor protein; ATP-LID 99.9 1.6E-23 5.5E-28 184.6 18.0 147 413-588 2-150 (152)
18 3sl2_A Sensor histidine kinase 99.9 1.4E-23 4.9E-28 190.0 17.2 155 416-591 2-157 (177)
19 1r62_A Nitrogen regulation pro 99.9 1.7E-23 5.8E-28 186.2 16.3 155 412-586 3-159 (160)
20 1i58_A Chemotaxis protein CHEA 99.9 3.5E-23 1.2E-27 189.6 12.6 150 415-586 3-189 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.9 7.8E-21 2.7E-25 161.7 14.9 125 417-586 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 1E-19 3.5E-24 155.2 14.8 125 415-586 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.8 5.8E-19 2E-23 149.4 15.4 122 418-586 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.7 1.7E-17 5.8E-22 144.4 11.9 105 455-590 35-143 (145)
25 1mu5_A Type II DNA topoisomera 99.7 3.9E-16 1.3E-20 160.0 12.7 118 453-588 26-150 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.7 3.1E-16 1.1E-20 162.4 11.9 115 456-588 28-149 (530)
27 3p01_A Two-component response 99.6 2.4E-15 8.2E-20 136.6 15.9 171 126-312 12-182 (184)
28 3trc_A Phosphoenolpyruvate-pro 99.6 1.8E-14 6.3E-19 128.8 17.7 166 139-318 3-170 (171)
29 3e0y_A Conserved domain protei 99.6 5.7E-15 2E-19 133.4 12.0 171 134-318 5-175 (181)
30 2e4s_A CAMP and CAMP-inhibited 99.6 1.2E-14 4.2E-19 132.4 14.2 171 135-319 4-186 (189)
31 3k2n_A Sigma-54-dependent tran 99.6 3E-14 1E-18 128.3 14.6 165 140-318 2-175 (177)
32 2zmf_A CAMP and CAMP-inhibited 99.6 6.3E-14 2.1E-18 127.5 15.3 165 140-318 9-185 (189)
33 3o5y_A Sensor protein; GAF dom 99.5 1E-13 3.4E-18 122.5 12.3 157 155-325 2-159 (165)
34 3ci6_A Phosphoenolpyruvate-pro 99.5 4E-13 1.4E-17 119.6 16.3 165 138-316 4-170 (171)
35 3oov_A Methyl-accepting chemot 99.5 1.3E-12 4.5E-17 116.3 16.7 158 144-315 2-168 (169)
36 4glq_A Methyl-accepting chemot 99.5 3.8E-13 1.3E-17 119.6 13.0 154 149-316 2-161 (171)
37 2q2e_B Type 2 DNA topoisomeras 99.4 2.3E-13 7.9E-18 142.8 10.3 114 453-586 31-154 (621)
38 2vjw_A GAF-B, GAF family prote 99.4 3.8E-12 1.3E-16 110.6 15.2 136 158-318 1-143 (149)
39 2lb5_A Sensor histidine kinase 99.4 1.1E-12 3.8E-17 121.4 10.7 169 133-315 5-203 (208)
40 3dba_A CONE CGMP-specific 3',5 99.3 3.4E-12 1.2E-16 115.1 10.7 154 141-308 4-172 (180)
41 1ykd_A Adenylate cyclase; GAF 99.3 1.9E-11 6.5E-16 125.4 17.5 170 136-319 191-386 (398)
42 3mmh_A FRMSR, methionine-R-sul 99.3 7.7E-11 2.6E-15 103.4 18.8 146 143-308 16-161 (167)
43 2qyb_A Membrane protein, putat 99.3 5.6E-12 1.9E-16 113.8 10.8 159 144-317 3-166 (181)
44 1mc0_A 3',5'-cyclic nucleotide 99.3 9.4E-11 3.2E-15 118.8 20.8 166 137-318 174-346 (368)
45 3ibj_A CGMP-dependent 3',5'-cy 99.3 3.8E-11 1.3E-15 131.7 18.5 168 139-322 176-350 (691)
46 2w3g_A DOSS, two component sen 99.3 1.5E-11 5.2E-16 107.3 11.8 146 155-316 3-152 (153)
47 3hcy_A Putative two-component 99.3 5.3E-12 1.8E-16 110.2 8.4 145 156-316 1-146 (151)
48 1mc0_A 3',5'-cyclic nucleotide 99.3 3.7E-11 1.3E-15 121.8 15.5 163 141-319 11-176 (368)
49 1vhm_A Protein YEBR; structura 99.3 3E-10 1E-14 102.2 17.9 153 139-313 24-177 (195)
50 3cit_A Sensor histidine kinase 99.2 1.6E-10 5.4E-15 97.9 14.6 148 135-318 6-156 (160)
51 1ykd_A Adenylate cyclase; GAF 99.2 8.9E-10 3E-14 112.8 19.3 168 138-319 3-194 (398)
52 3ibj_A CGMP-dependent 3',5'-cy 99.1 3.6E-10 1.2E-14 123.9 12.9 162 140-318 11-175 (691)
53 2ool_A Sensor protein; bacteri 99.1 2.6E-09 8.8E-14 104.0 17.1 175 140-315 143-333 (337)
54 3rfb_A Putative uncharacterize 99.1 5.3E-09 1.8E-13 91.2 16.8 142 144-307 18-160 (171)
55 1f5m_A GAF; CGMP binding, sign 99.1 4.9E-09 1.7E-13 93.6 16.7 145 143-307 26-177 (180)
56 3ksh_A Putative uncharacterize 99.1 4.5E-09 1.6E-13 90.7 15.2 141 145-307 18-159 (160)
57 3zq5_A Phytochrome-like protei 99.0 1.3E-08 4.3E-13 104.8 20.3 174 142-316 136-325 (520)
58 3nhq_A Bacteriophytochrome; ph 99.0 1.7E-08 5.7E-13 103.7 21.1 176 140-316 121-312 (505)
59 2k2n_A Sensor protein, SYB-CPH 99.0 2E-09 6.9E-14 96.0 12.4 141 159-313 1-171 (172)
60 4e04_A Bacteriophytochrome (li 99.0 9.7E-09 3.3E-13 98.7 17.1 168 142-310 132-315 (327)
61 3s7o_A Bacteriophytochrome; bi 99.0 1.2E-08 4E-13 98.3 16.4 170 141-311 149-334 (343)
62 3eea_A GAF domain/HD domain pr 98.9 1.1E-08 3.8E-13 81.4 11.1 151 150-315 5-162 (162)
63 3bjc_A CGMP-specific 3',5'-cyc 98.8 5.5E-10 1.9E-14 125.4 0.0 172 137-321 146-331 (878)
64 3bjc_A CGMP-specific 3',5'-cyc 98.8 9.2E-10 3.1E-14 123.6 0.4 174 136-322 326-521 (878)
65 4eho_A Bacteriophytochrome, PA 98.7 9.6E-07 3.3E-11 95.2 19.7 172 144-316 132-319 (635)
66 3na3_A DNA mismatch repair pro 98.6 9.8E-08 3.3E-12 93.1 10.1 86 459-571 28-119 (348)
67 1b63_A MUTL; DNA mismatch repa 98.6 1.5E-07 5.2E-12 92.4 10.3 78 459-558 24-107 (333)
68 1h7s_A PMS1 protein homolog 2; 98.6 1.6E-07 5.6E-12 93.0 10.3 78 459-558 34-117 (365)
69 3ke6_A Protein RV1364C/MT1410; 98.6 5.3E-08 1.8E-12 98.9 6.8 91 456-588 294-388 (399)
70 3h4l_A DNA mismatch repair pro 98.5 2.4E-07 8.2E-12 91.3 9.3 86 459-571 25-116 (367)
71 1kij_A DNA gyrase subunit B; t 98.4 2.2E-07 7.6E-12 92.9 6.9 85 454-562 31-127 (390)
72 1ixm_A SPO0B, protein (sporula 98.4 4.3E-06 1.5E-10 74.6 13.3 146 342-536 19-171 (192)
73 2wer_A ATP-dependent molecular 98.1 9.3E-07 3.2E-11 81.4 3.1 103 462-584 29-178 (220)
74 3zcc_A HAMP, osmolarity sensor 98.1 3E-05 1E-09 63.0 10.6 67 331-402 47-113 (114)
75 1yc1_A HSP 86, heat shock prot 97.9 1E-05 3.5E-10 75.9 5.1 102 462-583 71-218 (264)
76 2ior_A Chaperone protein HTPG; 97.8 3.2E-06 1.1E-10 78.4 1.2 55 462-536 50-119 (235)
77 1qy5_A Endoplasmin; GRP94, NEC 97.8 1.9E-06 6.6E-11 80.9 -0.6 103 463-585 32-185 (269)
78 3t0h_A Heat shock protein HSP 97.6 1.1E-05 3.7E-10 73.9 1.2 77 462-558 35-136 (228)
79 1s16_A Topoisomerase IV subuni 97.6 0.00012 4E-09 73.1 8.6 77 461-560 33-124 (390)
80 3zrx_A AF1503 protein, osmolar 97.5 0.00047 1.6E-08 55.7 9.1 62 337-403 53-114 (115)
81 1ei1_A DNA gyrase B, GYRB; ATP 97.5 0.0004 1.4E-08 69.2 9.9 79 459-560 34-127 (391)
82 3o0i_A HSP90AA1 protein; HSP90 97.4 2.3E-05 7.8E-10 72.5 0.7 78 462-559 63-165 (256)
83 2gqp_A Endoplasmin; GRP94, HSP 97.4 1.7E-05 5.8E-10 73.4 -0.5 53 462-534 35-102 (236)
84 3peh_A Endoplasmin homolog; st 97.4 6E-05 2.1E-09 70.4 2.7 47 512-558 94-151 (281)
85 1y4s_A Chaperone protein HTPG; 97.2 0.00032 1.1E-08 72.8 6.4 103 462-584 30-181 (559)
86 3nmq_A Heat shock protein HSP 97.2 9.8E-05 3.3E-09 67.5 2.1 49 511-559 86-144 (239)
87 3cwv_A DNA gyrase, B subunit, 97.2 0.00096 3.3E-08 65.9 8.9 76 456-558 27-108 (369)
88 3fv5_A DNA topoisomerase 4 sub 97.2 0.00096 3.3E-08 59.9 7.9 76 461-559 19-109 (201)
89 4eu0_A PELD; C-DI-GMP, signali 97.1 0.0028 9.5E-08 60.1 10.8 132 159-313 24-156 (298)
90 2cg9_A ATP-dependent molecular 97.0 0.0004 1.4E-08 73.4 4.8 102 463-584 30-178 (677)
91 1zxm_A TOPO IIA ATPase, DNA to 96.9 0.0029 9.9E-08 63.0 9.6 80 457-558 50-145 (400)
92 2ioq_A Chaperone protein HTPG; 96.9 0.00036 1.2E-08 73.5 3.1 78 462-559 30-134 (624)
93 4duh_A DNA gyrase subunit B; s 96.9 0.0024 8.1E-08 58.0 8.0 79 458-559 34-127 (220)
94 4emv_A DNA topoisomerase IV, B 96.8 0.0042 1.4E-07 56.5 8.8 81 456-559 37-131 (226)
95 2w1r_A Spovt, stage V sporulat 96.8 0.0049 1.7E-07 50.4 8.4 119 163-308 4-122 (123)
96 2o1u_A Endoplasmin; GRP94, HSP 96.7 0.00045 1.5E-08 73.0 2.1 52 462-533 48-114 (666)
97 3ttz_A DNA gyrase subunit B; p 96.3 0.013 4.3E-07 52.3 8.4 48 456-526 28-78 (198)
98 1pvg_A DNA topoisomerase II; G 96.3 0.008 2.7E-07 60.1 7.9 80 458-559 63-158 (418)
99 3ied_A Heat shock protein; HSP 96.0 0.0022 7.6E-08 58.5 2.1 48 511-558 130-188 (272)
100 3e98_A GAF domain of unknown f 95.8 0.095 3.3E-06 48.6 12.1 159 122-309 77-243 (252)
101 3mm4_A Histidine kinase homolo 95.5 0.0028 9.6E-08 57.5 0.7 31 559-590 16-46 (206)
102 3lnu_A Topoisomerase IV subuni 95.4 0.015 5E-07 57.8 5.2 76 461-559 52-142 (408)
103 4gfh_A DNA topoisomerase 2; to 93.3 0.074 2.5E-06 60.4 5.5 80 458-559 58-153 (1177)
104 3nhq_A Bacteriophytochrome; ph 72.6 4 0.00014 41.8 5.4 52 134-185 310-361 (505)
105 3szt_A QCSR, quorum-sensing co 63.2 85 0.0029 28.2 12.2 142 148-305 7-154 (237)
106 3rlb_A THIT; S-component, ECF 47.4 1.3E+02 0.0044 26.1 9.6 54 20-77 89-143 (192)
107 4hkr_A Calcium release-activat 47.2 1.4E+02 0.0048 25.8 11.1 28 58-86 122-149 (214)
108 3zq5_A Phytochrome-like protei 47.0 36 0.0012 34.9 7.1 49 136-184 325-373 (520)
109 3lmm_A Uncharacterized protein 46.3 50 0.0017 34.5 8.2 98 461-588 298-410 (583)
110 3ehh_A Sensor kinase (YOCF pro 46.2 1.2E+02 0.0043 26.1 10.1 15 344-358 32-46 (218)
111 2lq0_A De novo designed antifr 35.9 25 0.00086 18.2 1.9 14 57-70 8-21 (26)
112 3cvf_A Homer-3, homer protein 35.0 1.3E+02 0.0043 21.8 8.7 9 353-361 65-73 (79)
113 3cve_A Homer protein homolog 1 32.7 1.3E+02 0.0045 21.2 8.6 8 353-360 59-66 (72)
114 2jrw_A Cyclic extended PEP.1; 28.7 29 0.001 18.0 1.4 11 594-604 13-23 (26)
115 2ks1_B Epidermal growth factor 28.0 1.1E+02 0.0039 19.2 4.4 19 30-48 21-40 (44)
116 2w1t_A Spovt, stage V sporulat 27.2 1.6E+02 0.0054 25.1 6.7 41 264-306 135-175 (178)
117 3l39_A Putative PHOU-like phos 25.6 3.5E+02 0.012 23.9 12.2 114 286-402 19-153 (227)
118 2gx5_A GTP-sensing transcripti 24.4 3.2E+02 0.011 23.0 12.6 41 268-309 126-166 (170)
119 2jwa_A Receptor tyrosine-prote 22.7 1.5E+02 0.0051 18.6 5.0 17 32-48 24-40 (44)
120 3uon_A Human M2 muscarinic ace 20.7 2.5E+02 0.0086 27.6 8.3 55 53-107 389-443 (467)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=2.1e-36 Score=292.74 Aligned_cols=231 Identities=31% Similarity=0.460 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccee
Q 007434 337 AETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQ 413 (604)
Q Consensus 337 ~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~ 413 (604)
+++..+.+.+|++.++|||||||++|.++++.+.+. ...++.+++++.+...+.++..++++++++++.+.+.....
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence 344456678999999999999999999999988653 23345678899999999999999999999999988888888
Q ss_pred eeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEEecc
Q 007434 414 IGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKS 489 (604)
Q Consensus 414 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~----g~i~i~~~~~~~ 489 (604)
.+++++.+++++++..+...+..+++.+.+..+...+..+.+|+..+.|++.||+.||+||++. +.|.|.+...++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence 8899999999999999998888899988887764445557789999999999999999999864 347777666554
Q ss_pred cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE 569 (604)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~ 569 (604)
. +.|+|+|||+||+++.++++|+||++++.......+|+|+||++||++++.|||+|+++
T Consensus 173 ~--------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~ 232 (258)
T 2c2a_A 173 G--------------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVE 232 (258)
T ss_dssp E--------------------EEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEE
T ss_pred e--------------------EEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3 89999999999999999999999999876544445699999999999999999999999
Q ss_pred ecCCCceEEEEEEEEecCC
Q 007434 570 SEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 570 s~~~g~Gt~~~~~lp~~~~ 588 (604)
|. +|+||+|+|++|....
T Consensus 233 s~-~~~Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 233 SE-VGKGSRFFVWIPKDRA 250 (258)
T ss_dssp EE-TTTEEEEEEEEECCC-
T ss_pred ec-CCCCcEEEEEeeCCCC
Confidence 99 8999999999998654
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=2.6e-34 Score=279.85 Aligned_cols=234 Identities=29% Similarity=0.437 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 007434 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDG 408 (604)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~ 408 (604)
+++.++++++..+.+.+|++.++||++|||+.|.++++++.+. ..+++.+++++.+....+++..++++++++++...+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444445555566778999999999999999999999999864 467788999999999999999999999999999988
Q ss_pred CcceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEEe
Q 007434 409 SLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVA 487 (604)
Q Consensus 409 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~-g~i~i~~~~~ 487 (604)
.......++++.+++.++...+......+++.+.++++...+ .+.+|+..+.+++.||+.||+||++. +.|.|++...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec
Confidence 888888899999999999999998888899999999877654 47789999999999999999999975 6789888776
Q ss_pred cccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEE
Q 007434 488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567 (604)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~ 567 (604)
++. +.|+|+|||+||+++.++++|+||++++ .+|.|+||++|+++++.|||+|+
T Consensus 185 ~~~--------------------~~i~V~D~G~Gi~~~~~~~if~~~~~~~------~~g~GlGL~i~~~~~~~~gG~i~ 238 (268)
T 4ew8_A 185 LGE--------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRD------RGGPGLGLALVKALVELHGGWVA 238 (268)
T ss_dssp SSE--------------------EEEEEEESSCCCCHHHHTTTTSTTCCCS------SCCCTTHHHHHHHHHHHTTCEEE
T ss_pred CCE--------------------EEEEEEcCCCCCCHHHHHHHHHHHhcCC------CCCCcccHHHHHHHHHHcCCEEE
Confidence 554 9999999999999999999999999766 46999999999999999999999
Q ss_pred EEecCCCceEEEEEEEEecCCCCC
Q 007434 568 IESEGLGKGCTAIFIVKLGIPEHS 591 (604)
Q Consensus 568 i~s~~~g~Gt~~~~~lp~~~~~~~ 591 (604)
+++. +|+||+|+|.||....+..
T Consensus 239 i~s~-~~~Gt~~~i~lP~~~~~~~ 261 (268)
T 4ew8_A 239 LESE-PGNGSTFTCHLPETQQPGA 261 (268)
T ss_dssp EEEC-TTSCEEEEEEEECCC----
T ss_pred EEec-CCCCEEEEEEecCCCCCCC
Confidence 9999 8999999999998765443
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=3.5e-32 Score=278.37 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeee
Q 007434 339 TAIRARNDFLAVMNHEMRTPMHAII-ALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTF 417 (604)
Q Consensus 339 ~~~~~~~~l~~~i~Hel~~pL~~i~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~ 417 (604)
+.++.+.++++.++||++|||+.|. ++.+++.....+++.+++++.+..+..++..++++++++++.+.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 3456788999999999999999998 666665554556778999999999999999999999999999888888888899
Q ss_pred cHHHHHHHHHHHhhhhhhcc---CcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC---------cEEEEEE
Q 007434 418 NLHAVFREVLNLIKPIASVK---KLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG---------NISITGF 485 (604)
Q Consensus 418 ~l~~~l~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g---------~i~i~~~ 485 (604)
++.+++++++..++..+..+ .+.+.+..+.+ ..+.+|+..|.+|+.||+.||+||+..+ .|.|++.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999888877 33444444433 2466799999999999999999998643 6888887
Q ss_pred EecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccc--------------------cCCC
Q 007434 486 VAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIA--------------------LRNS 545 (604)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~--------------------~~~~ 545 (604)
..++. +.|+|+|+|+||+++.++++|++||+++... .+..
T Consensus 274 ~~~~~--------------------v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (388)
T 1gkz_A 274 NNDVD--------------------LIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPM 333 (388)
T ss_dssp ECSSE--------------------EEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CC
T ss_pred eCCCE--------------------EEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCc
Confidence 65543 9999999999999999999999999988632 1123
Q ss_pred CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCC
Q 007434 546 SGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 546 ~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~ 589 (604)
.|+|+||++||.+++.|||+|++.|. +|.||+|+|+||.....
T Consensus 334 ~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 334 HGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGR 376 (388)
T ss_dssp SCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSC
T ss_pred CCccCCHHHHHHHHHHhCCEEEEEec-CCCcEEEEEEecCCCCC
Confidence 69999999999999999999999999 89999999999986543
No 4
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=4.6e-32 Score=260.11 Aligned_cols=219 Identities=23% Similarity=0.436 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH
Q 007434 341 IRARNDFLAVMNHEMRTPMHAIIALSSLLQETELT-PEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (604)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l 419 (604)
.+.+++|++.++||+||||+.|.++++++.+...+ ++.+++++.+.+..+++..++++++++++.... ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 36678899999999999999999999999876554 456788999999999999999999999886543 4568999
Q ss_pred HHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCC
Q 007434 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAP 498 (604)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~ 498 (604)
..++.++...+......+++.+.+..++ ..+.+|+..+.+++.||+.||+||++ ++.|.|++...++.
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~-------- 155 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGR-------- 155 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTE--------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCE--------
Confidence 9999999999998888888888877644 35778999999999999999999995 56788888776654
Q ss_pred CCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEE
Q 007434 499 EFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578 (604)
Q Consensus 499 ~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~ 578 (604)
+.|+|+|||+||+++..+++|+||++++. ..|.|+||++|+++++.|||+|++++. +++||+
T Consensus 156 ------------~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~ 217 (244)
T 3d36_A 156 ------------VLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTT 217 (244)
T ss_dssp ------------EEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEE
T ss_pred ------------EEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhHHHHHHHHHHcCCEEEEEec-CCCcEE
Confidence 99999999999999999999999998773 468999999999999999999999998 899999
Q ss_pred EEEEEEecCCCCCC
Q 007434 579 AIFIVKLGIPEHSN 592 (604)
Q Consensus 579 ~~~~lp~~~~~~~~ 592 (604)
|+|+||+...+...
T Consensus 218 ~~i~lP~~~~~~~~ 231 (244)
T 3d36_A 218 VSIYLPLASSPSSS 231 (244)
T ss_dssp EEEEEECCC-----
T ss_pred EEEEecCCCCCCcc
Confidence 99999997655433
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=5e-33 Score=262.75 Aligned_cols=216 Identities=21% Similarity=0.293 Sum_probs=133.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHH
Q 007434 345 NDFLAVMNHEMRTPMHAIIALSSLLQETELT-PEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVF 423 (604)
Q Consensus 345 ~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l 423 (604)
++|++.++||+||||++|.++++++.....+ +..+++++.+...++++..++++++++++.+.+.......++++.+++
T Consensus 3 ~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~~ 82 (222)
T 3jz3_A 3 RRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLL 82 (222)
T ss_dssp -------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHHH
T ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHHH
Confidence 4799999999999999999999988754333 334667778889999999999999999998887777888899999999
Q ss_pred HHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEEecccccccCCCCCCcc
Q 007434 424 REVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPEFFP 502 (604)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~ 502 (604)
++++..+...+..+++.+.++++...+ .+.+|+..+.+++.||++||+||++.+ .|.|++.. .
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~--~------------- 146 (222)
T 3jz3_A 83 QSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA--D------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS--S-------------
T ss_pred HHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcc--C-------------
Confidence 999999999889999999999877643 467899999999999999999999754 46665421 1
Q ss_pred cCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEE
Q 007434 503 VPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (604)
Q Consensus 503 ~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~ 582 (604)
.|.|+|||+||+++.++++|+||++++.. ..+|+|+||++||++++.|||+|+++|. +|+||+|+++
T Consensus 147 ---------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~ 213 (222)
T 3jz3_A 147 ---------NFIVRDNGPGVTPEALARIGERFYRPPGQ---TATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVS 213 (222)
T ss_dssp ---------EEEEECSCC-----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEE
T ss_pred ---------eEEEEECCCCCCHHHHHHHHhhhccCCCC---CCCcccccHHHHHHHHHHcCCEEEEEcC-CCCcEEEEEe
Confidence 28899999999999999999999986532 3469999999999999999999999999 8999999999
Q ss_pred EEecCCC
Q 007434 583 VKLGIPE 589 (604)
Q Consensus 583 lp~~~~~ 589 (604)
+|...++
T Consensus 214 ~P~~~~~ 220 (222)
T 3jz3_A 214 WLEHHHH 220 (222)
T ss_dssp CCCC---
T ss_pred ecCCCCC
Confidence 9977654
No 6
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.98 E-value=1.6e-31 Score=270.91 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~ 420 (604)
+.+++|++.++||++|||++|.++++++.+... +++..++++.+...++++..++++++++++. .......++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 567889999999999999999999999886533 3345778999999999999999999999993 335677799999
Q ss_pred HHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCC
Q 007434 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 421 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
++++++...+...+..+++.+.++.++..+ .+.+|+..+.+++.||++||+||++ ++.|.|++...++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~--------- 276 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTK--------- 276 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTE---------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCCE---------
Confidence 999999999998888889999888876543 5778999999999999999999995 67899988876654
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHH-HcCCEEEEEecCCCceEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN-LMEGHIWIESEGLGKGCT 578 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~-~~gG~i~i~s~~~g~Gt~ 578 (604)
+.|+|+|||+||+++.++++|+||++++ .+|+|+||++||++++ .|||.+++++. + +||+
T Consensus 277 -----------~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL~i~~~~v~~~~gg~i~~~~~-~-~Gt~ 337 (349)
T 3a0r_A 277 -----------VRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENR-E-NGVV 337 (349)
T ss_dssp -----------EEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC-S-SEEE
T ss_pred -----------EEEEEEECCCCCChHHHhhcCCCCccCC------CCCccchHHHHHHHHHHhCCCEEEEEeC-C-CcEE
Confidence 9999999999999999999999999887 4699999999999998 89999999997 4 4999
Q ss_pred EEEEEEecCC
Q 007434 579 AIFIVKLGIP 588 (604)
Q Consensus 579 ~~~~lp~~~~ 588 (604)
|+|++|+..+
T Consensus 338 f~i~lP~~~~ 347 (349)
T 3a0r_A 338 FIFEIPKTPE 347 (349)
T ss_dssp EEEEEESCTT
T ss_pred EEEEecCCCC
Confidence 9999998653
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=7.7e-31 Score=268.60 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=180.2
Q ss_pred HHHHHHHhhhh-----HHHHHHHHHHHHhcC----CCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HhhhhCCCcceee
Q 007434 347 FLAVMNHEMRT-----PMHAIIALSSLLQET----ELTPEQRLMVE--TILKSSNLLATLINDVLD-LSRLEDGSLQLQI 414 (604)
Q Consensus 347 l~~~i~Hel~~-----pL~~i~~~~~~l~~~----~~~~~~~~~l~--~i~~~~~~l~~li~~l~~-~~~~~~~~~~~~~ 414 (604)
+...++||||| ||+.|.++++++... ...++.+++++ .+.+.+.++ +++++++ +++. .+......
T Consensus 98 ~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~~ 174 (394)
T 2e0a_A 98 DFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSHI 174 (394)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTSB
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCcc
Confidence 55667799999 899999999977643 24566788888 688889999 9999998 5554 44555555
Q ss_pred ----eeecHHHHHHHHHHHhhhhhhcc-----CcEEEEEe--CCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC-----
Q 007434 415 ----GTFNLHAVFREVLNLIKPIASVK-----KLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG----- 478 (604)
Q Consensus 415 ----~~~~l~~~l~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g----- 478 (604)
+++++.+++++++..++..+..+ ++.+.+++ .+..+..+.+|+..|.+++.||+.||+||++.+
T Consensus 175 g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~ 254 (394)
T 2e0a_A 175 GSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQP 254 (394)
T ss_dssp TTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 68999999999999999888877 88887753 223344677899999999999999999998643
Q ss_pred ---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccccc------ccCCCCCcc
Q 007434 479 ---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRNSSGSG 549 (604)
Q Consensus 479 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~~g~G 549 (604)
.|.|++...++. +.|+|+|+|+||+++.++++|++|++++.. ..+..+|+|
T Consensus 255 ~~~~I~I~~~~~~~~--------------------v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2e0a_A 255 SLTPIEVIVVLGKED--------------------LTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFG 314 (394)
T ss_dssp SCCCEEEEEEECSSE--------------------EEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSS
T ss_pred CCCCEEEEEEeCCCE--------------------EEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcc
Confidence 488888765543 999999999999999999999999998864 333457999
Q ss_pred hhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 550 LGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 550 lGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
+||+|||.+++.|||+|+++|. +|.||+|+|+||...
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 315 YGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALS 351 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred cCHHHHHHHHHHhCCEEEEEec-CCccEEEEEEeCCCC
Confidence 9999999999999999999999 899999999999865
No 8
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=9.1e-31 Score=250.21 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=153.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHHHHHHH
Q 007434 347 FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREV 426 (604)
Q Consensus 347 l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 426 (604)
+++.|+|||||||++|.++++++.+...++..+++++.|.+.++++.++++. +++..+. .....++++.++...+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~~----~r~~~~~-~~~~~~~~~~~l~~~~ 123 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQF----TRVAFGA-SASAENFDSRELEKLA 123 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CSSCCCEEHHHHHHHH
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH----HHHhhcc-ccccccccHHHHHHHH
Confidence 7788999999999999999999998877777788889999988888877653 3332222 2233467776654333
Q ss_pred HHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccccccCCCCCCcccCC
Q 007434 427 LNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFFPVPI 505 (604)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (604)
+...+.+++.+.+++++.. .+..+.|++.||+.||+||++ +|.|+|++...++.
T Consensus 124 ----~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~--------------- 178 (247)
T 4fpp_A 124 ----QGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADGR--------------- 178 (247)
T ss_dssp ----HHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTE---------------
T ss_pred ----HHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCE---------------
Confidence 3334557777776554331 245688999999999999997 45799998877664
Q ss_pred CCceEEEEEEEecCCC--CCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEE
Q 007434 506 ENHFYLRVQVKDSGSG--ISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIV 583 (604)
Q Consensus 506 ~~~~~~~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~l 583 (604)
+.|+|+|+|+| ++++..+++|++|++++ .+|+|+||+|||++++.|||+|+++|. +| ||+|+++|
T Consensus 179 -----~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~------~~G~GLGLai~~~iv~~hGG~i~v~s~-~~-G~~f~v~L 245 (247)
T 4fpp_A 179 -----FSIIADAKGPRARLRPEVLAGLKGEPLAEG------LGGPWVQAAYLNALVRAAGGQIAVEIG-ED-RASIAAWV 245 (247)
T ss_dssp -----EEEEEEEESTTCCCCHHHHHHHTTCCCCSS------CHHHHHHHHHHHHHHHHTTCEEEEEEE-TT-EEEEEEEE
T ss_pred -----EEEEEEEcCCCCCCCHHHHHHhcCCCCCCC------CCCccHHHHHHHHHHHHcCCEEEEEEc-CC-EEEEEEEe
Confidence 89999999987 66777888888887765 569999999999999999999999998 55 99999999
Q ss_pred E
Q 007434 584 K 584 (604)
Q Consensus 584 p 584 (604)
|
T Consensus 246 P 246 (247)
T 4fpp_A 246 P 246 (247)
T ss_dssp E
T ss_pred c
Confidence 9
No 9
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.97 E-value=5.5e-31 Score=269.85 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=172.8
Q ss_pred HHHHHHHHhhhh-----HHHHHHHHHHHHhcCCCCH----HHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhC-CCccee
Q 007434 346 DFLAVMNHEMRT-----PMHAIIALSSLLQETELTP----EQRLMVE--TILKSSNLLATLINDVLDLSRLED-GSLQLQ 413 (604)
Q Consensus 346 ~l~~~i~Hel~~-----pL~~i~~~~~~l~~~~~~~----~~~~~l~--~i~~~~~~l~~li~~l~~~~~~~~-~~~~~~ 413 (604)
++.+.++||||| ||+.|.++++++.....++ +.+++++ .+...+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 366778899999 9999999999987654443 3344677 477888888 9999999999866 455566
Q ss_pred e----eeecHHHHHHHHHHHhhhhhhc-----cCcEEEEEe--CCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC----
Q 007434 414 I----GTFNLHAVFREVLNLIKPIASV-----KKLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG---- 478 (604)
Q Consensus 414 ~----~~~~l~~~l~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g---- 478 (604)
. +++++.+++++++..++..+.. +++.+.+.. .+..+..+.+|+..|.+++.||+.||+||++.+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 7899999999999999988876 888777643 122234577899999999999999999998644
Q ss_pred ----cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccccc-----ccCCCCCcc
Q 007434 479 ----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI-----ALRNSSGSG 549 (604)
Q Consensus 479 ----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-----~~~~~~g~G 549 (604)
.|.|++...++. +.|+|+|+|+||+++.++++|++||+++.. .....+|+|
T Consensus 255 ~~~~~I~I~~~~~~~~--------------------v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEED--------------------LSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSSE--------------------EEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCCE--------------------EEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 488888765543 999999999999999999999999998864 233356999
Q ss_pred hhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCC
Q 007434 550 LGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 550 lGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
+||+|||.+++.|||+|+++|. +|+||+|+|+||....
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALST 352 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTT
T ss_pred CCHHHHHHHHHHhCCEEEEEec-CCCceEEEEEecCCCC
Confidence 9999999999999999999999 8999999999998653
No 10
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.97 E-value=1.5e-30 Score=267.61 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhhhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhC----C
Q 007434 344 RNDFLAVMNHEMRT-----PMHAIIALSSLLQETELT----PEQRLMVET--ILKSSNLLATLINDVLDLSRLED----G 408 (604)
Q Consensus 344 ~~~l~~~i~Hel~~-----pL~~i~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~l~~~~~~~~----~ 408 (604)
++.|.+.+ ||||| ||+.|.++++++.....+ ++.+++++. +...+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 35666665 99999 999999999987754333 344667776 67778888 9999999999854 2
Q ss_pred ---CcceeeeeecHHHHHHHHHHHhhhhhhcc-----CcEEEEEe--CCCCCcceEccHHHHHHHHHHHHHHHhhcCCCC
Q 007434 409 ---SLQLQIGTFNLHAVFREVLNLIKPIASVK-----KLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG 478 (604)
Q Consensus 409 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g 478 (604)
.......++++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+..|.+++.||+.||+||++.+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567779999999999999999888877 88888766 122334577899999999999999999998643
Q ss_pred --------cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccccc------ccCC
Q 007434 479 --------NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRN 544 (604)
Q Consensus 479 --------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~ 544 (604)
.|.|++...++. +.|+|+|+|+||+++.++++|++||+++.. ....
T Consensus 263 ~~~~~~~~~I~I~~~~~~~~--------------------v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNED--------------------LTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSSE--------------------EEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCCE--------------------EEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 588888765543 999999999999999999999999998864 1223
Q ss_pred CCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 545 SSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 545 ~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
.+|+|+||+|||.+++.|||+|+++|. +|+||+|+|+||...
T Consensus 323 ~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALS 364 (407)
T ss_dssp SSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred CCCcCCCHHHHHHHHHHhCCEEEEEEc-CCCceEEEEEECCCC
Confidence 479999999999999999999999999 899999999999864
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=7.9e-30 Score=262.85 Aligned_cols=220 Identities=20% Similarity=0.235 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhhhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhC-CCcc
Q 007434 344 RNDFLAVMNHEMRTPMH-----AIIALSSLLQETEL----TPEQRLMVETILKS--SNLLATLINDVLDLSRLED-GSLQ 411 (604)
Q Consensus 344 ~~~l~~~i~Hel~~pL~-----~i~~~~~~l~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~l~~~~~~~~-~~~~ 411 (604)
+.+|+. ++|||||||+ .|.++++++..... .++.+++++.+... +.++ ++++++.+++... ....
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345665 5599999999 77999997765322 34456677776555 6777 9999977765432 2222
Q ss_pred e----eeeeecHHHHHHHHHHHhhhhhhc-----cCcEEEEEeC--CCCCcceEccHHHHHHHHHHHHHHHhhcCCCC--
Q 007434 412 L----QIGTFNLHAVFREVLNLIKPIASV-----KKLLVALNLA--PDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-- 478 (604)
Q Consensus 412 ~----~~~~~~l~~~l~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g-- 478 (604)
. ..+++++.+++++++..++..+.. +++.+.+... +..+..+.+|+..|.+|+.||++||+||++++
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 337899999999999999887765 7777776431 12344577899999999999999999998643
Q ss_pred -------cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccccc------ccCCC
Q 007434 479 -------NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRNS 545 (604)
Q Consensus 479 -------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~ 545 (604)
.|.|.+...++. +.|+|+|+|+||+++.++++|+|||+++.. ..+..
T Consensus 275 ~~~~~~~~I~I~~~~~~~~--------------------v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKED--------------------LSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEECSSE--------------------EEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeCCCE--------------------EEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 588888665543 999999999999999999999999998864 22335
Q ss_pred CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecC
Q 007434 546 SGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (604)
Q Consensus 546 ~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~ 587 (604)
+|+|+||+|||.+++.|||+|+++|. +|.||+|+|+||...
T Consensus 335 ~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 335 AGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALS 375 (419)
T ss_dssp --CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCG
T ss_pred CCeecCHHHHHHHHHHhCCEEEEEec-CCCCEEEEEEecCCC
Confidence 79999999999999999999999999 899999999999865
No 12
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.94 E-value=4.4e-26 Score=214.30 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQET--ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l 419 (604)
+++.+++..++|++++||+.+...++.+... ..++...+.+..+.+.+.++...++++....+ +.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~~-----------~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMK-----------GIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------CCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcCH
Confidence 5567899999999999999999999887652 33444566777777776666666665543322 5678
Q ss_pred HHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCC
Q 007434 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPE 499 (604)
Q Consensus 420 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (604)
.+.+..+...+. ..++.+.++.+...+.....+...+.+++.|+++||+||++++.|+|++...++.
T Consensus 95 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~--------- 161 (218)
T 3ehh_A 95 KDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKE--------- 161 (218)
T ss_dssp HHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETTE---------
T ss_pred HHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCCE---------
Confidence 888777766653 4677788777665444455678889999999999999999988899998877654
Q ss_pred CcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEE
Q 007434 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (604)
Q Consensus 500 ~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~ 579 (604)
+.|+|+|||+||+++.. +|+|+||++||++++.|||+|++.|. + ||+|
T Consensus 162 -----------~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~v~~~gG~i~~~s~-~--Gt~~ 209 (218)
T 3ehh_A 162 -----------VVITVSDDGTFKGEENS------------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GTKL 209 (218)
T ss_dssp -----------EEEEEEESSCCCC--------------------------CHHHHHHHHHHHTTCEEEEECS-S--SEEE
T ss_pred -----------EEEEEEECCcCCCCCCC------------------CCCCCCHHHHHHHHHHcCCEEEEeCC-C--CeEE
Confidence 99999999999998752 58999999999999999999999998 5 9999
Q ss_pred EEEEEecC
Q 007434 580 IFIVKLGI 587 (604)
Q Consensus 580 ~~~lp~~~ 587 (604)
+++||+..
T Consensus 210 ~i~lP~~~ 217 (218)
T 3ehh_A 210 TMAIPNNS 217 (218)
T ss_dssp EEEEEC--
T ss_pred EEEEecCC
Confidence 99999753
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=2.7e-26 Score=232.65 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
..+..++.+++||+++|++.+.+..+.+.. +.+.+..+++..+++++++++.. .+.+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~--------~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK--------IRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH--------HHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH--------cceecHHH
Confidence 345678899999999999999887665432 45788888999999999988741 23677888
Q ss_pred HHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHH---HHHHHHHHHHHHHhhcC-------------CCCcEEEEEE
Q 007434 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEK---RLMQTLLNVVGNAVKFT-------------KEGNISITGF 485 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~---~l~~il~nLl~NA~k~~-------------~~g~i~i~~~ 485 (604)
++..+...++..+...+..+++.++... ...|+. .+.+++.||+.||+||+ +.|.|+|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 9988888888888877777777776543 233665 45555999999999996 4567888887
Q ss_pred EecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch------------------------hhhhhccccccccc
Q 007434 486 VAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI------------------------PNLFTKFAQNQAIA 541 (604)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~ 541 (604)
..++. +.|+|+|||+||+++.+ +++|+|||+++...
T Consensus 146 ~~~~~--------------------v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~ 205 (379)
T 1b3q_A 146 HEGNN--------------------VVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKV 205 (379)
T ss_dssp EETTE--------------------EEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----
T ss_pred EeCCE--------------------EEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCcc
Confidence 76654 99999999999999987 88999999987542
Q ss_pred cCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCC
Q 007434 542 LRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 542 ~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
+..+|+|+||++||++++.|||+|+++|. +|+||+|++++|+...
T Consensus 206 -~~~~G~GlGL~iv~~~v~~~gG~i~v~s~-~g~Gt~f~i~lPl~~~ 250 (379)
T 1b3q_A 206 -SEVSGRGVGMDVVKNVVESLNGSMGIESE-KDKGTKVTIRLPLTLA 250 (379)
T ss_dssp -------CCCSHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSCE
T ss_pred -CCCCCccccHHHHHHHHHHCCCEEEEEEc-CCCCeEEEeccCCccc
Confidence 33579999999999999999999999999 8999999999998764
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.93 E-value=1.3e-24 Score=191.76 Aligned_cols=147 Identities=20% Similarity=0.355 Sum_probs=130.5
Q ss_pred eeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccccccc
Q 007434 415 GTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD 494 (604)
Q Consensus 415 ~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~ 494 (604)
+++++.+++++++..+...+..+++.+.++++... .+.+|+..+.+++.||++||+||+++ .|.|++...++.
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~~---- 74 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDEH---- 74 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSSC----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCCE----
Confidence 47999999999999999999999999999886654 46789999999999999999999976 788877666554
Q ss_pred CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCC
Q 007434 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (604)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g 574 (604)
+.|+|+|+|+|++++.++++|++|++++.. .+|.|+||++|+++++.|||++++++. ++
T Consensus 75 ----------------~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i~~~~~~~~gG~i~~~~~-~~ 133 (152)
T 1id0_A 75 ----------------LYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGES-ML 133 (152)
T ss_dssp ----------------EEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEEC-TT
T ss_pred ----------------EEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHHHHHHHHHcCCEEEEEeC-CC
Confidence 899999999999999999999999998753 578999999999999999999999998 78
Q ss_pred ceEEEEEEEEecCCC
Q 007434 575 KGCTAIFIVKLGIPE 589 (604)
Q Consensus 575 ~Gt~~~~~lp~~~~~ 589 (604)
+||+|++++|+...+
T Consensus 134 ~G~~~~i~lP~~~~~ 148 (152)
T 1id0_A 134 GGARMEVIFGRQHSA 148 (152)
T ss_dssp SSEEEEEEECCCC--
T ss_pred CcEEEEEEEeccccC
Confidence 999999999987654
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=4.6e-24 Score=187.65 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=118.4
Q ss_pred eeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccccc
Q 007434 413 QIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESL 492 (604)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~ 492 (604)
+.+++++.+++++++..+.... +++.+.++.+ .+..+.+|+..+.+++.||++||+||++++.|.|++...++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~-- 77 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAG-- 77 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTE--
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCE--
Confidence 4568999999999999887644 4556666554 334577899999999999999999999888888888776654
Q ss_pred ccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecC
Q 007434 493 RDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEG 572 (604)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~ 572 (604)
+.|+|+|+|+||+++.++++|+||+++... ...|.|+||++|+++++.|||++++++.
T Consensus 78 ------------------~~i~v~D~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~- 135 (150)
T 1ysr_A 78 ------------------VEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALVAQQAQLHGGTASLENS- 135 (150)
T ss_dssp ------------------EEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEEC-
T ss_pred ------------------EEEEEEECCCCCCHHHHHHHhcccccCCCC---CCCCCCcCHHHHHHHHHHcCCEEEEeec-
Confidence 999999999999999999999999976532 2568999999999999999999999998
Q ss_pred CCceEEEEEEEEec
Q 007434 573 LGKGCTAIFIVKLG 586 (604)
Q Consensus 573 ~g~Gt~~~~~lp~~ 586 (604)
+++||+|++++|+.
T Consensus 136 ~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 136 PLGGARLVLRLPGP 149 (150)
T ss_dssp TTSSEEEEEEEECC
T ss_pred CCCCEEEEEEEeCC
Confidence 78999999999974
No 16
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.91 E-value=8.3e-24 Score=188.37 Aligned_cols=150 Identities=24% Similarity=0.352 Sum_probs=127.4
Q ss_pred ceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccc
Q 007434 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSE 490 (604)
Q Consensus 411 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~ 490 (604)
+++.+++++.+++++++..+.. .+..+.+++.... ..+.+|+..+.+++.||+.||+||+ ++.|.|++...++.
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~~ 77 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS-IEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPNR 77 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC-CCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETTE
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC-ceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCCE
Confidence 3556789999999999998653 3445666654443 3577899999999999999999999 78899998776654
Q ss_pred ccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEe
Q 007434 491 SLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES 570 (604)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s 570 (604)
+.|.|+|||+||+++.++++|+||++++.. +...|+|+||++|+++++.|||++++++
T Consensus 78 --------------------~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~ 135 (161)
T 1bxd_A 78 --------------------AWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAIVQRIVDNHNGMLELGT 135 (161)
T ss_dssp --------------------EEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEE
T ss_pred --------------------EEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCcccCHHHHHHHHHHcCCEEEEEE
Confidence 899999999999999999999999998753 2346899999999999999999999999
Q ss_pred cCCCceEEEEEEEEecCCC
Q 007434 571 EGLGKGCTAIFIVKLGIPE 589 (604)
Q Consensus 571 ~~~g~Gt~~~~~lp~~~~~ 589 (604)
. +++||+|++++|+....
T Consensus 136 ~-~~~G~~~~i~lP~~~~~ 153 (161)
T 1bxd_A 136 S-ERGGLSIRAWLPVPVTR 153 (161)
T ss_dssp E-TTTEEEEEEEECCCSCC
T ss_pred C-CCCeEEEEEEEeCCccc
Confidence 8 78999999999987644
No 17
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.91 E-value=1.6e-23 Score=184.62 Aligned_cols=147 Identities=29% Similarity=0.455 Sum_probs=127.9
Q ss_pred eeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEecccc
Q 007434 413 QIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSES 491 (604)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~ 491 (604)
+.+++++.+++++++..+...+..+++.+.++++... ..+.+|+..+.+++.||++||+||++ ++.|.|++...++.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~- 79 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTK- 79 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSE-
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCE-
Confidence 3568999999999999999988999999999887553 35778999999999999999999985 66788888765543
Q ss_pred cccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHH-HcCCEEEEEe
Q 007434 492 LRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN-LMEGHIWIES 570 (604)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~-~~gG~i~i~s 570 (604)
+.|+|+|+|+|++++.++++|++|++++ .+|+|+||++||++++ .|||++.+++
T Consensus 80 -------------------~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~GlGL~i~~~~~~~~~gg~~~~~~ 134 (152)
T 3a0y_A 80 -------------------VRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTEN 134 (152)
T ss_dssp -------------------EEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHHHHHHHHHTTTSCEEEEEE
T ss_pred -------------------EEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 9999999999999999999999999876 4689999999999999 9999999999
Q ss_pred cCCCceEEEEEEEEecCC
Q 007434 571 EGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 571 ~~~g~Gt~~~~~lp~~~~ 588 (604)
. + +||+|++.+|....
T Consensus 135 ~-~-~g~~~~i~lP~~~~ 150 (152)
T 3a0y_A 135 R-E-NGVVFIFEIPKTPE 150 (152)
T ss_dssp E-T-TEEEEEEEEESCC-
T ss_pred C-C-CCEEEEEEeCCCCC
Confidence 8 4 49999999998643
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.91 E-value=1.4e-23 Score=189.99 Aligned_cols=155 Identities=27% Similarity=0.439 Sum_probs=125.5
Q ss_pred eecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEeccccccc
Q 007434 416 TFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRD 494 (604)
Q Consensus 416 ~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~-~g~i~i~~~~~~~~~~~~ 494 (604)
++++.++++.+++.+... ..+++.+.++++... ..+.+|+..|.+++.||+.||++|++ ++.+.|++.......
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD-LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC-CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC-cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999987 778888888886653 45778999999999999999999996 466777775443321
Q ss_pred CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCC
Q 007434 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (604)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g 574 (604)
.+.|+|+|||+||+++.++++|++|++.+.......+|.|+||++|+++++.|||+|++.+. ++
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~-~~ 140 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSI-EG 140 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEE-TT
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEec-CC
Confidence 38999999999999999999999999877654455679999999999999999999999999 88
Q ss_pred ceEEEEEEEEecCCCCC
Q 007434 575 KGCTAIFIVKLGIPEHS 591 (604)
Q Consensus 575 ~Gt~~~~~lp~~~~~~~ 591 (604)
+||+|++.||+......
T Consensus 141 ~Gt~~~i~lP~~~~~~~ 157 (177)
T 3sl2_A 141 KGTTITFTLPYKEEQED 157 (177)
T ss_dssp TEEEEEEEEEEEC----
T ss_pred CCeEEEEEEeCCCCccc
Confidence 99999999999766443
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.91 E-value=1.7e-23 Score=186.24 Aligned_cols=155 Identities=26% Similarity=0.350 Sum_probs=109.9
Q ss_pred eeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCC--CCcEEEEEEEecc
Q 007434 412 LQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK--EGNISITGFVAKS 489 (604)
Q Consensus 412 ~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~--~g~i~i~~~~~~~ 489 (604)
++.+++++.+++++++..+... ..+++.+.++++...+. +.+|+..+.+++.||++||+||++ ++.|.|++...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~ 80 (160)
T 1r62_A 3 GTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQ 80 (160)
T ss_dssp --CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecccc
Confidence 4567899999999999999887 67788888888776554 677999999999999999999987 6678888876654
Q ss_pred cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE 569 (604)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~ 569 (604)
... ....+..++.|+|+|+|+||+++.++++|++|++++ .+|+|+||++|+++++.|||+++++
T Consensus 81 ~~~----------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~------~~g~GlGL~i~~~~~~~~gG~l~i~ 144 (160)
T 1r62_A 81 LTL----------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFT 144 (160)
T ss_dssp EEE----------TTEEEEEEEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEE
T ss_pred ccc----------cccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC------CCCCccCHHHHHHHHHHCCCeEEEE
Confidence 100 000011248999999999999999999999999876 4689999999999999999999999
Q ss_pred ecCCCceEEEEEEEEec
Q 007434 570 SEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 570 s~~~g~Gt~~~~~lp~~ 586 (604)
+. +++ |+|++.+|+.
T Consensus 145 s~-~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 145 SW-PGH-TEFSVYLPIR 159 (160)
T ss_dssp EE-TTE-EEEEEEEEEE
T ss_pred eC-CCC-EEEEEEEecc
Confidence 98 665 9999999975
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.89 E-value=3.5e-23 Score=189.58 Aligned_cols=150 Identities=22% Similarity=0.316 Sum_probs=123.8
Q ss_pred eeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcC-------------CCCcEE
Q 007434 415 GTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-------------KEGNIS 481 (604)
Q Consensus 415 ~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~-------------~~g~i~ 481 (604)
+++++.++++++...++..+..+++.+.+.++.........+...+.+++.||++||+||+ .++.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4799999999999999999888888888887655332222234556666999999999996 356688
Q ss_pred EEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch------------------------hhhhhccccc
Q 007434 482 ITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI------------------------PNLFTKFAQN 537 (604)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~ 537 (604)
|++...++. +.|+|+|||+||+++.+ +++|+||+++
T Consensus 83 I~~~~~~~~--------------------~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~ 142 (189)
T 1i58_A 83 LSARHEGNN--------------------VVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFST 142 (189)
T ss_dssp EEEEEETTE--------------------EEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSH
T ss_pred EEEEecCCE--------------------EEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccc
Confidence 888776553 99999999999999976 8999999998
Q ss_pred cccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEec
Q 007434 538 QAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (604)
Q Consensus 538 ~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~ 586 (604)
+... +...|+|+||++|+++++.|||+++++|. +++||+|+++||+.
T Consensus 143 ~~~~-~~~~g~GlGL~iv~~~~~~~~G~i~i~s~-~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 143 KEKV-SEVSGRGVGMDVVKNVVESLNGSISIESE-KDKGTKVTIRLPLT 189 (189)
T ss_dssp HHHH-HGGGTCCCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECC
T ss_pred cccC-CCCCCCccCHHHHHHHHHHcCCEEEEEeC-CCCceEEEEEEeCC
Confidence 7531 22368999999999999999999999999 89999999999973
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.85 E-value=7.8e-21 Score=161.73 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=102.6
Q ss_pred ecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCC
Q 007434 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSR 496 (604)
Q Consensus 417 ~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~ 496 (604)
+++.+.+..+...++ .+++.++++.+...+.....+...+.++++|+++||+||++++.|.|++...++.
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~------ 71 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKE------ 71 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETTE------
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCE------
Confidence 456666666665554 5677787777654444445578899999999999999999888899998776654
Q ss_pred CCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCce
Q 007434 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (604)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~G 576 (604)
+.|+|+|||+||+++.. +|+|+||+++|++++.|||+++++|. + |
T Consensus 72 --------------~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~~~~~gG~i~~~s~-~--G 116 (128)
T 3ehg_A 72 --------------VVITVSDDGTFKGEENS------------------FSKGHGLLGMRERLEFANGSLHIDTE-N--G 116 (128)
T ss_dssp --------------EEEEEEESSCCCSCSSC------------------CCTTSHHHHHHHHHHHTTCEEEEECS-S--S
T ss_pred --------------EEEEEEECCcCcCcccC------------------CCCCccHHHHHHHHHHcCCEEEEEeC-C--C
Confidence 99999999999998752 57899999999999999999999998 5 9
Q ss_pred EEEEEEEEec
Q 007434 577 CTAIFIVKLG 586 (604)
Q Consensus 577 t~~~~~lp~~ 586 (604)
|+|++++|+.
T Consensus 117 t~~~i~lP~~ 126 (128)
T 3ehg_A 117 TKLTMAIPNN 126 (128)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEEecC
Confidence 9999999975
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1e-19 Score=155.20 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=103.4
Q ss_pred eeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEeccccccc
Q 007434 415 GTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD 494 (604)
Q Consensus 415 ~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~ 494 (604)
+.+++.+.+.++...+ ..+++.++++++...+.....++..+.+++.||++||+||++++.|.|++...++
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~~----- 73 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDDD----- 73 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESSE-----
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcCC-----
Confidence 4688999999999887 4466777777766554444445889999999999999999988888888765422
Q ss_pred CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCC
Q 007434 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (604)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g 574 (604)
+.++|+|||+|++++. +|+||+++|++++.|||++.+.+. ++
T Consensus 74 ----------------~~i~v~D~G~gi~~~~---------------------~GlGL~i~~~~~~~~gG~i~~~~~-~~ 115 (129)
T 3zxo_A 74 ----------------LCIEVTDNGRGMPDEF---------------------TGSGLTNLRQRAEQAGGEFTLASM-PG 115 (129)
T ss_dssp ----------------EEEEEEECCCCCTTTT---------------------CSHHHHHHHHHHHHTTCEEEEEEC-TT
T ss_pred ----------------EEEEEecCCCCCCccc---------------------CCcCHHHHHHHHHHcCCEEEEeeC-CC
Confidence 7899999999998753 699999999999999999999998 77
Q ss_pred -ceEEEEEEEEec
Q 007434 575 -KGCTAIFIVKLG 586 (604)
Q Consensus 575 -~Gt~~~~~lp~~ 586 (604)
+||+|++++|+.
T Consensus 116 ~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 116 ASGTVLRWSAPLS 128 (129)
T ss_dssp TCCEEEEEEEESC
T ss_pred CCcEEEEEEecCC
Confidence 899999999975
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=5.8e-19 Score=149.35 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCC
Q 007434 418 NLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRA 497 (604)
Q Consensus 418 ~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~ 497 (604)
++.+.+.++...+ ...++.++++++...+.....+...+.+++.|+++||+||++++.|.|++...++
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-------- 69 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVEDD-------- 69 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE--------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC--------
Confidence 4566666776666 3466667777665544444445789999999999999999998888888765432
Q ss_pred CCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceE
Q 007434 498 PEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGC 577 (604)
Q Consensus 498 ~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt 577 (604)
+.++|+|||+|++++. .|+||++++++++.|||++.+++. +++||
T Consensus 70 -------------~~i~v~D~G~gi~~~~---------------------~GlGL~~~~~~~~~~gG~i~~~~~-~~~G~ 114 (124)
T 3zxq_A 70 -------------VRVEVVDDGVGISGDI---------------------TESGLRNLRQRADDAGGEFTVENM-PTGGT 114 (124)
T ss_dssp -------------EEEEEEECCCSSCGGG---------------------SHHHHHHHHHHHHHHTCEEEEEEC-TTSSE
T ss_pred -------------EEEEEEECCCCCCccc---------------------cccCHHHHHHHHHHhCCEEEEEEc-CCCcE
Confidence 6899999999998753 499999999999999999999998 78899
Q ss_pred EEEEEEEec
Q 007434 578 TAIFIVKLG 586 (604)
Q Consensus 578 ~~~~~lp~~ 586 (604)
+|++++|+.
T Consensus 115 ~~~i~lP~~ 123 (124)
T 3zxq_A 115 LLRWSAPLR 123 (124)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999975
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.73 E-value=1.7e-17 Score=144.42 Aligned_cols=105 Identities=24% Similarity=0.372 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhh
Q 007434 455 GDEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (604)
Q Consensus 455 ~d~~~l~~il~nLl~NA~k~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 530 (604)
.|...+.+++.||++||+||+.. +.|.|++...++. +.|+|+|||+||+ .++++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~--------------------~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGV--------------------VHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTE--------------------EEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCE--------------------EEEEEEECCCCcC--hHHHh
Confidence 37888999999999999999864 6788888776654 9999999999999 88999
Q ss_pred hhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCCCC
Q 007434 531 FTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 531 f~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
|++|++++. ...|.|+||++++++++ ++.+++. +++||+|++++|+..+++
T Consensus 93 ~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~-~~~Gt~v~~~lp~~~~~~ 143 (145)
T 1th8_A 93 RQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESE-VNKGTTVYLKKHGIHHHH 143 (145)
T ss_dssp TCCC-----------CCCSCHHHHHHHHSS----EEEEEEE-TTTEEEEEEEECCC----
T ss_pred hcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeC-CCCCEEEEEEEecccccc
Confidence 999998874 24689999999999987 8999998 899999999999876554
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.66 E-value=3.9e-16 Score=160.04 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=96.0
Q ss_pred eEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 453 AVGDEKRLMQTLLNVVGNAVKFTKEG----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 453 ~~~d~~~l~~il~nLl~NA~k~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
...|+..|.|++.||++||++|+..+ .|.|++...+.. ...+.|+|+|||+||+++.++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCc-----------------CcEEEEEEEECCCCCCHHHHH
Confidence 44578999999999999999998743 688887765411 013899999999999999999
Q ss_pred hhhhcccccccccc-CCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceE-EEEEEEEecCC
Q 007434 529 NLFTKFAQNQAIAL-RNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGC-TAIFIVKLGIP 588 (604)
Q Consensus 529 ~if~~f~~~~~~~~-~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt-~~~~~lp~~~~ 588 (604)
++|++|+++..... ...+|+|+||++++.+++.|||+ +++.|. +++|+ .|+|++|++..
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~-~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEECTT
T ss_pred HHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEe-cCCCceEEEEEEecccc
Confidence 99999976654321 33568999999999999999999 999998 77776 88999888753
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.65 E-value=3.1e-16 Score=162.45 Aligned_cols=115 Identities=26% Similarity=0.365 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFTKE-G---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
|+..|.|++.||++||++|+.. + .|.|++...+.. ...+.|+|+|||+||+++.++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCc-----------------CceEEEEEEECCCCCCHHHHHHHh
Confidence 4589999999999999999875 4 688887765511 013899999999999999999999
Q ss_pred hcccccccccc-CCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceE-EEEEEEEecCC
Q 007434 532 TKFAQNQAIAL-RNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGC-TAIFIVKLGIP 588 (604)
Q Consensus 532 ~~f~~~~~~~~-~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt-~~~~~lp~~~~ 588 (604)
++|+++..... ...+|+|+||++++.+++.|||+ +++.|. +++|+ .|+|++|+...
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~-~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEEETT
T ss_pred ccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe-cCCCeEEEEEEEEeccc
Confidence 99976654322 34578999999999999999999 999998 67776 88888888653
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.65 E-value=2.4e-15 Score=136.60 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcc
Q 007434 126 AAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGY 205 (604)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~ 205 (604)
..++++..+++++++++++.++++++.+.+++|++++++.+++.+.+.+++++|+|++++++... .....+........
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~-~~~~~~~~~~~~~~ 90 (184)
T 3p01_A 12 YDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQTLS-TIQGFYSQQGTVNN 90 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEE-EEEEEEESSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCcee-eeeeeccccCccCc
Confidence 55677888889999999999999999999999999999999999999999999999999544332 22222222222222
Q ss_pred cccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc
Q 007434 206 TVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA 285 (604)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~ 285 (604)
..+ ..+.+.+++++++++.++|...++++.........|..+.+++| +..++.++|++.+.+..+
T Consensus 91 ~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~~GvL~l~~~~~ 155 (184)
T 3p01_A 91 WLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIP--------------ITYRNEMLGVLSLQWQQP 155 (184)
T ss_dssp CGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESSC
T ss_pred ccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEE--------------EEECCEEEEEEEeCcCCC
Confidence 244 47899999999999999998877765531111122456666777 666788899999988889
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Q 007434 286 RQWHVHELELVEVVADQVAVALSHAAI 312 (604)
Q Consensus 286 ~~~~~~e~~ll~~la~~~a~al~~a~l 312 (604)
+.|+++|+++++.+|+|+++||+||+.
T Consensus 156 ~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 156 ISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 28
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.61 E-value=1.8e-14 Score=128.76 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=137.5
Q ss_pred HHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC--CCCcccccCCChhHHH
Q 007434 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ--NPVGYTVPIQLPVINQ 216 (604)
Q Consensus 139 ~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 216 (604)
+.+.++.++++++.+.++.|++++++.+++.+.+.+++++++|++.|+++..+......+.. .......+...+.+++
T Consensus 3 al~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (171)
T 3trc_A 3 AMNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGL 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhH
Confidence 34567889999999999999999999999999999999999999999988776666555432 2233367778899999
Q ss_pred HhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHH
Q 007434 217 VFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELV 296 (604)
Q Consensus 217 v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll 296 (604)
++++++++.++|...++++.........+..+.+++| +..++.+.|++.+.+..++.|+++|++++
T Consensus 83 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~~~~~~~~~f~~~d~~~l 148 (171)
T 3trc_A 83 VGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIP--------------IIEQGELLGILVIQQLESHHFAEEEEAFC 148 (171)
T ss_dssp HHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEE--------------EEETTEEEEEEEEEESSSCCCCHHHHHHH
T ss_pred HHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEe--------------EEECCEEEEEEEEeecCCCCCCHHHHHHH
Confidence 9999999999998877776644333345566777777 66678899999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007434 297 EVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 297 ~~la~~~a~al~~a~l~~~~~~ 318 (604)
+.+|++++.+++++++++++++
T Consensus 149 ~~la~~~a~ai~~a~l~~~l~~ 170 (171)
T 3trc_A 149 VTLAIHLAAEIAHARAKGALEK 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987543
No 29
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.59 E-value=5.7e-15 Score=133.42 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=131.4
Q ss_pred HHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChh
Q 007434 134 GLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPV 213 (604)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (604)
++++++++++..++++++.+.++.+++++++.+++.+.+.+++++++|++.|+++..+....+...........+.+.+.
T Consensus 5 ~~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (181)
T 3e0y_A 5 QRANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGI 84 (181)
T ss_dssp ------CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCe
Confidence 34556667788899999999999999999999999999999999999999998877444444433333444567778889
Q ss_pred HHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhH
Q 007434 214 INQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHEL 293 (604)
Q Consensus 214 ~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~ 293 (604)
+++++.+++++.++|...++++.........+..+.+++| +..++.++|++.+.+..++.|+++++
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 85 TGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFP--------------IGDKKEVYGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp HHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHH
T ss_pred eeehhhcCCeEEecCcccCccccccccccccCcceEEEEE--------------EEeCCeEEEEEEEeeCCCCCCCHHHH
Confidence 9999999999999987777665533333334566666777 66678899999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 294 ELVEVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 294 ~ll~~la~~~a~al~~a~l~~~~~~ 318 (604)
++++.+|++++.++++++++++.++
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~~~ 175 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASSRK 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887544
No 30
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.59 E-value=1.2e-14 Score=132.39 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=132.7
Q ss_pred HhhhHHHHhHHHHHHHHHHhcc-CCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEE-eecc--------CCCCc
Q 007434 135 LIRTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSY-TLRQ--------QNPVG 204 (604)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~-~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~-~~~~--------~~~~~ 204 (604)
.++++.++.+.|.++++.+.++ +|++++++.+++.+.+.+++++|+|+++|+++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 3456677888999999999887 599999999999999999999999999998877665432 1111 12345
Q ss_pred ccccCCChhHHHHhhcCCeEEeCCCCcccccccccc-ccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC
Q 007434 205 YTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG-KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD 283 (604)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~ 283 (604)
...|.+.+.+++++++++++.++|...++++..... ....+..+.+++| +..++.++|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEE--------------eccCCeEEEEEEEEeC
Confidence 567788999999999999999999887777653211 1123445556666 5578889999999888
Q ss_pred Ccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 284 SAR-QWHVHELELVEVVADQVAVALSHAAILEESMRA 319 (604)
Q Consensus 284 ~~~-~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~ 319 (604)
.++ .|+++|+++++.+|+++++||+|++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 999999999999999999999999999886554
No 31
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.57 E-value=3e-14 Score=128.27 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=128.8
Q ss_pred HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee-ccC---CCCcccccCCChhHH
Q 007434 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL-RQQ---NPVGYTVPIQLPVIN 215 (604)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 215 (604)
+..++.++++++.+.+++|++++++.+++.+.+.+++++|+|+++|+++..+...... ... .......|...+.++
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 4567889999999999999999999999999999999999999999988876653211 111 122345667788999
Q ss_pred HHhhcCCeEEeCCCCcccccccc-c----cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccch
Q 007434 216 QVFSSNHAVKISPNCPVARLRPL-A----GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHV 290 (604)
Q Consensus 216 ~v~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~ 290 (604)
++++++++..++....++.+... . .....|..+.+++| +..++.++|++.+.+..++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSP--------------LRSGGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEE--------------EEECCEEEEEEEEEECCCCCCCH
Confidence 99999999999433324443321 0 11223455666666 66677999999999998999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 291 HELELVEVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 291 ~e~~ll~~la~~~a~al~~a~l~~~~~~ 318 (604)
+|+++++.+|+++++||+|+++++++++
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988543
No 32
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.55 E-value=6.3e-14 Score=127.54 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=125.7
Q ss_pred HHHhHHHHHHHHHH-hccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC---------CCCcccccC
Q 007434 140 EETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ---------NPVGYTVPI 209 (604)
Q Consensus 140 ~~~~~~l~~~~~~l-~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (604)
.+..+.|.++++.+ ++.+|++++++.+++.+.+++++++|+||++|+++..+......... .......|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 34456688888874 67799999999999999999999999999999988877654432221 122335677
Q ss_pred CChhHHHHhhcCCeEEeCCCCcccccccccc-ccCCCceeEEEeccccccccccCCcccccccceEEEEEEe-cCCCccc
Q 007434 210 QLPVINQVFSSNHAVKISPNCPVARLRPLAG-KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLML-PSDSARQ 287 (604)
Q Consensus 210 ~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~-~~~~~~~ 287 (604)
..+..++++++++++.+++...++.+..... ....+..+.+++| +..++.++|++.+ .+..++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEee--------------ecccCceeeEEEEEEcCCCCC
Confidence 8889999999999999999887776553222 1223345555666 5556677777755 5667889
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 288 WHVHELELVEVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 288 ~~~~e~~ll~~la~~~a~al~~a~l~~~~~~ 318 (604)
|+++|+++++.+|+|+|+||+|+++++++++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543
No 33
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.51 E-value=1e-13 Score=122.54 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=109.2
Q ss_pred ccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC-CCCcccccCCChhHHHHhhcCCeEEeCCCCccc
Q 007434 155 STLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ-NPVGYTVPIQLPVINQVFSSNHAVKISPNCPVA 233 (604)
Q Consensus 155 ~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~ 233 (604)
..++++++++.+++.+.+.++++++++++++++...+....+.... ...+..+|...+.+.+++++++++..+......
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~~ 81 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQD 81 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTTC
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccccc
Confidence 3578999999999999999999999999998654433332221111 124556777789999999999999976544333
Q ss_pred cccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 007434 234 RLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAIL 313 (604)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~ 313 (604)
.+.........+..+.+++| +..++.++|++.+.+..++.|+++++++++.+|+|+|++++||++|
T Consensus 82 ~~~~~~~~~~~~~~S~l~vP--------------L~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ly 147 (165)
T 3o5y_A 82 NFYEKQYLAILDLKSILVIP--------------IYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVELY 147 (165)
T ss_dssp CCTTHHHHHTTTCCEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred ccccchHHHhhCCCEEEEeC--------------eeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222345677777887 6678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007434 314 EESMRARDLLMQ 325 (604)
Q Consensus 314 ~~~~~~~~~l~~ 325 (604)
++.++.++++++
T Consensus 148 ~~~~~~~~~~~~ 159 (165)
T 3o5y_A 148 GQVLRSKQEWED 159 (165)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 997776665544
No 34
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.51 E-value=4e-13 Score=119.65 Aligned_cols=165 Identities=12% Similarity=0.163 Sum_probs=130.6
Q ss_pred hHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC--CCCcccccCCChhHH
Q 007434 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ--NPVGYTVPIQLPVIN 215 (604)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 215 (604)
+++++++.++++++.+.++.+.+++++.+++.+.+.++++++++++.|+++..+......+.. .......+...+.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 345678899999999999999999999999999999999999999999887777665554432 223345677788999
Q ss_pred HHhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHH
Q 007434 216 QVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELEL 295 (604)
Q Consensus 216 ~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~l 295 (604)
+++.+++++.+++...++.+.........+..+.+++| +..++.+.|++.+.+..++.|+++++++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~ 149 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVP--------------VMYRRKVMGVLVVQNKQPQDFSEAAESF 149 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCCHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEe--------------EEECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 99999999999987776665433222233445555566 5577889999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007434 296 VEVVADQVAVALSHAAILEES 316 (604)
Q Consensus 296 l~~la~~~a~al~~a~l~~~~ 316 (604)
++.+|.+++.+++++++++++
T Consensus 150 l~~la~~~a~al~~~~l~~~l 170 (171)
T 3ci6_A 150 LVTLCAQLSGVIAHAHAVGNI 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998763
No 35
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.47 E-value=1.3e-12 Score=116.29 Aligned_cols=158 Identities=18% Similarity=0.261 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC--CCcccccC--CChhHHHHhh
Q 007434 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN--PVGYTVPI--QLPVINQVFS 219 (604)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~ 219 (604)
+.|+++++.+.++.|.+++++.+++.+.+.++++++++++.|+++..+......+... .....++. ..+.+.++++
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4688999999999999999999999999999999999999998888777666555332 23445565 5789999999
Q ss_pred cCCeEEeCCCCccccccccc----cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc-cccchhhHH
Q 007434 220 SNHAVKISPNCPVARLRPLA----GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA-RQWHVHELE 294 (604)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ 294 (604)
+++++.++|...+++..... .....+..+.+++| +..++.++|++.+.+..+ +.|++++++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICP--------------IVVKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEE--------------EEETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEE--------------EEeCCcEEEEEEEEccccCCCCCHHHHH
Confidence 99999999887766543211 11123345555555 557788999999998765 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007434 295 LVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 295 ll~~la~~~a~al~~a~l~~~ 315 (604)
+++.+|++++++++|++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999874
No 36
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.47 E-value=3.8e-13 Score=119.62 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee--ccCCCCcccccCCC--hhHHHHhhcCCeE
Q 007434 149 LTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPIQL--PVINQVFSSNHAV 224 (604)
Q Consensus 149 ~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~v~~~~~~~ 224 (604)
.+.+|++++|++++++++++++++.+++|||.||.+++++....+.... +.++..+..+|... ......+.+++++
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 3578999999999999999999999999999999999876543333222 22333444444422 2345678999999
Q ss_pred EeCCCCccccccccc-cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecC-CCccccchhhHHHHHHHHHH
Q 007434 225 KISPNCPVARLRPLA-GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPS-DSARQWHVHELELVEVVADQ 302 (604)
Q Consensus 225 ~i~~~~~~~~~~~~~-~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~-~~~~~~~~~e~~ll~~la~~ 302 (604)
.++|....+..+... .....|..+.+.+| +..++..+|++.++. ..+|.|+++|+++++.+|+|
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vP--------------i~~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVP--------------MVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEE--------------EEETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEE--------------EEECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 999865432221111 11133455555555 555667777777765 78999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007434 303 VAVALSHAAILEES 316 (604)
Q Consensus 303 ~a~al~~a~l~~~~ 316 (604)
+++||++|+++++.
T Consensus 148 l~iAi~qa~l~~~~ 161 (171)
T 4glq_A 148 GSLVLERLHFLEQT 161 (171)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999873
No 37
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.43 E-value=2.3e-13 Score=142.82 Aligned_cols=114 Identities=19% Similarity=0.344 Sum_probs=89.1
Q ss_pred eEccHHHHHHHHHHHHHHHhhcCC-CC---cEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh
Q 007434 453 AVGDEKRLMQTLLNVVGNAVKFTK-EG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (604)
Q Consensus 453 ~~~d~~~l~~il~nLl~NA~k~~~-~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 528 (604)
+.+|+..|.+++.||++||++|+. +| .|.|.+...+.. .+.|+|+|||+||+++.++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 456999999999999999999986 55 688877666522 3899999999999999999
Q ss_pred hhhhccccccccc--cCCCCCcchhHHHHHHHHHHcCCE-EEEEecCCC---ceEEEEEEEEec
Q 007434 529 NLFTKFAQNQAIA--LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLG---KGCTAIFIVKLG 586 (604)
Q Consensus 529 ~if~~f~~~~~~~--~~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g---~Gt~~~~~lp~~ 586 (604)
++|++|+++..-. ....+++|+||++++.+++.|||+ |++++. .+ .|++|+|.+|..
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~-~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSK-TSPTAPAHYYELMINTS 154 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEE-CSSSSCEEEEECCCCSS
T ss_pred HHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEee-ccCCccceEEEEecchh
Confidence 9998876553211 123478999999999999999999 899997 44 366666655554
No 38
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.42 E-value=3.8e-12 Score=110.56 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHhhhhhcCCeeEEEeecCCC----CeEEEEEeecc--CCCCcccccCCChhHHHHhhcCCeEEeCCCCc
Q 007434 158 DRHTILKTTLVELGRTLALEECALWMPTRTG----LELQLSYTLRQ--QNPVGYTVPIQLPVINQVFSSNHAVKISPNCP 231 (604)
Q Consensus 158 ~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~ 231 (604)
|++++++.+++.+.+++++++++|+++|+++ ..+.+....+. ....+...|.+.+.+++++++++++.++|...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678899999999999999999999998764 55555444433 23455677888999999999999999999775
Q ss_pred cccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC-CccccchhhHHHHHHHHHHHHHHHHHH
Q 007434 232 VARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD-SARQWHVHELELVEVVADQVAVALSHA 310 (604)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~-~~~~~~~~e~~ll~~la~~~a~al~~a 310 (604)
++ +..+.+++| +..++.+.|++.+.+. .++.|+++++++++.+|+|++++++++
T Consensus 81 d~-----------~~~s~l~vP--------------L~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLP--------------LRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEE--------------EEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEE--------------EccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 466777777 6667889999999887 888999999999999999999999999
Q ss_pred HHHHHHHH
Q 007434 311 AILEESMR 318 (604)
Q Consensus 311 ~l~~~~~~ 318 (604)
+++++.++
T Consensus 136 ~~~~~~~~ 143 (149)
T 2vjw_A 136 SSQRRMSE 143 (149)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHHH
Confidence 99877443
No 39
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.39 E-value=1.1e-12 Score=121.43 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=92.9
Q ss_pred HHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeec---cCCCCcccccC
Q 007434 133 MGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR---QQNPVGYTVPI 209 (604)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~---~~~~~~~~~~~ 209 (604)
...++++.++++.++++++.+++++|++++++.+++.+.+.+++++|.|+++|+++.......... .+...+...|.
T Consensus 5 ~~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (208)
T 2lb5_A 5 TWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPA 84 (208)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEG
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCCh
Confidence 345667778889999999999999999999999999999999999999999988765433333322 12223333333
Q ss_pred CC--hhHHHHhhcCCeEEeCC------------------------CCcccccccc-ccccCCCceeEEEecccccccccc
Q 007434 210 QL--PVINQVFSSNHAVKISP------------------------NCPVARLRPL-AGKYMPGEVVAVRVPLLHLSNFQI 262 (604)
Q Consensus 210 ~~--~~~~~v~~~~~~~~i~~------------------------~~~~~~~~~~-~~~~~~~~~~~i~~pl~~~~~~~~ 262 (604)
.+ ......+..+....+.| ....+..... ......|..+.+++|
T Consensus 85 ~~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vP--------- 155 (208)
T 2lb5_A 85 GDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------- 155 (208)
T ss_dssp GGCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEE---------
T ss_pred hhCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEE---------
Confidence 21 12333344444444433 2221111100 000122344555555
Q ss_pred CCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 263 NDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 263 ~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
+..++..+|++.+.+..++.|+++|+++++.+|+++|+|++++++++.
T Consensus 156 -----i~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 156 -----LMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -----EEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----EEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788899999988899999999999999999999999999998864
No 40
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.34 E-value=3.4e-12 Score=115.05 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=122.1
Q ss_pred HHhHHHHHHHHHHhccC-CHHHHHHHHHHHhhhhhcCCeeEEEeecCCCC--eEEEEEe---ecc-------CCCCcccc
Q 007434 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLALEECALWMPTRTGL--ELQLSYT---LRQ-------QNPVGYTV 207 (604)
Q Consensus 141 ~~~~~l~~~~~~l~~~~-~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~--~~~~~~~---~~~-------~~~~~~~~ 207 (604)
++++.|.++++.+.+.+ |++++++.+++.+.+.+++++|+|+++|+++. .+..... .+. ........
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 55788999999999999 99999999999999999999999999988654 3332211 111 11223467
Q ss_pred cCCChhHHHHhhcCCeEEeCCCCccccccccccc-cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc
Q 007434 208 PIQLPVINQVFSSNHAVKISPNCPVARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR 286 (604)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~ 286 (604)
|.+.+.+++++++++++.++|...++++.+.... ......+.+++| +..++.++|++.+.+....
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vP--------------l~~~~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIP--------------ITQGKEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEE--------------eccCCEEEEEEEEEeCCCC
Confidence 8889999999999999999999888887643221 122356777777 5666889999999887665
Q ss_pred -ccchhhHHHHHHHHHHHHHHHH
Q 007434 287 -QWHVHELELVEVVADQVAVALS 308 (604)
Q Consensus 287 -~~~~~e~~ll~~la~~~a~al~ 308 (604)
.|+++|.++++.+|.++|++|.
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i~ 172 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVLR 172 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999986
No 41
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.34 E-value=1.9e-11 Score=125.37 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=132.5
Q ss_pred hhhHHHHhHHHHHHHHHHhc-cCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhH
Q 007434 136 IRTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVI 214 (604)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~-~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (604)
.+++.++++.+.++++.+.+ ..+++++++.+++.+.+.+++++|.|++.|+++..+................|.+.+.+
T Consensus 191 ~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T 1ykd_A 191 ATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchh
Confidence 34455667889999999999 99999999999999999999999999999988777766554222223344677788999
Q ss_pred HHHhhcCCeEEeC-CCCcccccccc--c-cccCCCceeEEEeccccccccccCCccccc-ccceEEEEEEecCCC-----
Q 007434 215 NQVFSSNHAVKIS-PNCPVARLRPL--A-GKYMPGEVVAVRVPLLHLSNFQINDWPELS-TKRYALMVLMLPSDS----- 284 (604)
Q Consensus 215 ~~v~~~~~~~~i~-~~~~~~~~~~~--~-~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~-~~~~~~gvl~~~~~~----- 284 (604)
++++.+++++.++ |...++++... . .....+..+.+++| +. .++.++|++.+.+..
T Consensus 271 ~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~iGvl~l~~~~~~~~~ 336 (398)
T 1ykd_A 271 GIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMP--------------VFNGDQELIGVTQLVNKKKTGEF 336 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEE--------------EECSSSCEEEEEEEEEECCSSCC
T ss_pred hHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEe--------------eecCCCCEEEEEEEEecCCcccc
Confidence 9999999999999 87776665532 1 00112244555666 44 578889999888776
Q ss_pred ---------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 285 ---------------ARQWHVHELELVEVVADQVAVALSHAAILEESMRA 319 (604)
Q Consensus 285 ---------------~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~ 319 (604)
++.|+++|+++++.+|.++++||++++++++.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 337 PPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999986554
No 42
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.34 E-value=7.7e-11 Score=103.39 Aligned_cols=146 Identities=13% Similarity=0.061 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCC
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNH 222 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (604)
...+.++...+....|+++.++.++..+.+.+++++|++|+.|+++..+.+....+.. ....++.+.+.+++++++++
T Consensus 16 ~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~~--~~~~i~~geGi~G~v~~~g~ 93 (167)
T 3mmh_A 16 REVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPL--ACTRIPFGRGVCGQAWAKGG 93 (167)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESSC--CCSEEETTSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecccc--cceEeccCCChHHHHHhCCc
Confidence 4567788888889999999999999999999999999999999888777766555433 34578889999999999999
Q ss_pred eEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHH
Q 007434 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQ 302 (604)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~ 302 (604)
++.++|...++++... ..+..+.+++| +..++.++|++.+.+..++.|+++|.++|+.+|++
T Consensus 94 ~~~v~Dv~~~p~~~~~----~~~~~S~i~vP--------------i~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 94 TVVVGDVDAHPDHIAC----SSLSRSEIVVP--------------LFSDGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp CEEESCGGGSTTCCCS----STTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcchhhc----CccCCeEEEEE--------------eccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999988877532 24566777777 55688999999999999999999999999999999
Q ss_pred HHHHHH
Q 007434 303 VAVALS 308 (604)
Q Consensus 303 ~a~al~ 308 (604)
++.++.
T Consensus 156 la~~i~ 161 (167)
T 3mmh_A 156 LEKRFE 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 43
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.32 E-value=5.6e-12 Score=113.79 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccC-CC--CcccccCCChhHHHHhhc
Q 007434 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ-NP--VGYTVPIQLPVINQVFSS 220 (604)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~v~~~ 220 (604)
..|+++++.+.++.|++++++.+++.+.+.++++.++|+++++++ .+.+....+.+ .. .....+...+.+++++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 468889999999999999999999999999999999999985444 34333332222 11 122334356899999999
Q ss_pred CCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccce-EEEEEEecC-CCccccchhhHHHHHH
Q 007434 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRY-ALMVLMLPS-DSARQWHVHELELVEV 298 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~-~~gvl~~~~-~~~~~~~~~e~~ll~~ 298 (604)
++++.++|...+++..........|..+.+++| +..++. ++|++.+.+ ..++.|+++++++++.
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vP--------------l~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIP--------------ISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEE--------------ECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEE--------------EEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999887655541100001122455555666 555666 899999998 8889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007434 299 VADQVAVALSHAAILEESM 317 (604)
Q Consensus 299 la~~~a~al~~a~l~~~~~ 317 (604)
+|.+++.+|++++.+++.+
T Consensus 148 la~~~a~al~~a~~~~~~~ 166 (181)
T 2qyb_A 148 LAGQLAQAVKIVTEMEAKE 166 (181)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999997665543
No 44
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.32 E-value=9.4e-11 Score=118.77 Aligned_cols=166 Identities=9% Similarity=0.105 Sum_probs=128.3
Q ss_pred hhHHHHhHHHHHHHHHHhcc-CCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeec---cCCCCcccccCCCh
Q 007434 137 RTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR---QQNPVGYTVPIQLP 212 (604)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~-~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 212 (604)
++++++++.+.++++.+.+. .+++++++.+++.+.+.+++++|+|++.|++ .+......+ .........|...+
T Consensus 174 ~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~~ 251 (368)
T 1mc0_A 174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQG 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSS--SEEEEEETTEECCCSTTCCEECTTSH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCC--ceEEEEeccccccccccceeecCCCc
Confidence 34556678899999999999 6999999999999999999999999999983 333333221 22334556778889
Q ss_pred hHHHHhhcCCeEEeCCCCcccccccccccc-CCCceeEEEeccccccccccCCcccccc-cceEEEEEEecCCCcc-ccc
Q 007434 213 VINQVFSSNHAVKISPNCPVARLRPLAGKY-MPGEVVAVRVPLLHLSNFQINDWPELST-KRYALMVLMLPSDSAR-QWH 289 (604)
Q Consensus 213 ~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~pl~~~~~~~~~~~p~l~~-~~~~~gvl~~~~~~~~-~~~ 289 (604)
.+++++++++++.++|...++++.+..... .....+.+++| +.. ++.++|++.+.+..++ .|+
T Consensus 252 ~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~iGvl~l~~~~~~~~f~ 317 (368)
T 1mc0_A 252 IAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFS 317 (368)
T ss_dssp HHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEE--------------EECTTSCEEEEEEEEEETTSSSCC
T ss_pred eeeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEe--------------eECCCCcEEEEEEEEECCCCCCCC
Confidence 999999999999999988777765322110 11124555555 444 4888999999887765 799
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 290 VHELELVEVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 290 ~~e~~ll~~la~~~a~al~~a~l~~~~~~ 318 (604)
++|+++++.+|.++++||++++++++.++
T Consensus 318 ~~d~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 318 KFDEDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988554
No 45
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.31 E-value=3.8e-11 Score=131.71 Aligned_cols=168 Identities=10% Similarity=0.087 Sum_probs=129.3
Q ss_pred HHHHhHHHHHHHHHHhc-cCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeecc---CCCCcccccCCChhH
Q 007434 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ---QNPVGYTVPIQLPVI 214 (604)
Q Consensus 139 ~~~~~~~l~~~~~~l~~-~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 214 (604)
+.++++.+.++++.+.+ +.+++++++.+++.+.+.+++++|++++.|+ ..+......+. ....+...|.+.+.+
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS--SEEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC--CeEEEEeecCCcccccccceeccCCCCHH
Confidence 34677889999999999 7999999999999999999999999999988 33333322222 123345678889999
Q ss_pred HHHhhcCCeEEeCCCCccccccccccc-cCCCceeEEEeccccccccccCCccccccc-ceEEEEEEecCCCcc-ccchh
Q 007434 215 NQVFSSNHAVKISPNCPVARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTK-RYALMVLMLPSDSAR-QWHVH 291 (604)
Q Consensus 215 ~~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~-~~~~gvl~~~~~~~~-~~~~~ 291 (604)
++++++++++.++|...++++.+.... ...+..+.+++| +..+ +.++|++.+.+..++ .|+++
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vP--------------L~~~~g~viGVL~l~~~~~~~~f~~~ 319 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFSKF 319 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEE--------------CCCSSSCCCEEEEEEEESSSSSCCTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEe--------------EECCCCCEEEEEEEEECCCCCCCCHH
Confidence 999999999999998888776432211 112345666666 4445 678888888877665 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 292 ELELVEVVADQVAVALSHAAILEESMRARDL 322 (604)
Q Consensus 292 e~~ll~~la~~~a~al~~a~l~~~~~~~~~~ 322 (604)
|+++++.+|.++|+||++++++++.++..++
T Consensus 320 d~~ll~~lA~~~aiAIena~l~~~l~~~~~~ 350 (691)
T 3ibj_A 320 DEDLATAFSIYCGISIAHSLLYKKVNEAQYR 350 (691)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766544
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.30 E-value=1.5e-11 Score=107.27 Aligned_cols=146 Identities=13% Similarity=0.138 Sum_probs=112.1
Q ss_pred ccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC--CCc-ccccCCChhHHHHhhcCCeEEeCCCCc
Q 007434 155 STLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN--PVG-YTVPIQLPVINQVFSSNHAVKISPNCP 231 (604)
Q Consensus 155 ~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~i~~~~~ 231 (604)
++.|++++++.+++.+.+.+++++++|++.|++ ..+......+... ... ...+...+.+.+++++++++.+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 456889999999999999999999999999954 4444443333221 111 245667889999999999999999877
Q ss_pred cccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc-cccchhhHHHHHHHHHHHHHHHHHH
Q 007434 232 VARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA-RQWHVHELELVEVVADQVAVALSHA 310 (604)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ll~~la~~~a~al~~a 310 (604)
++++..... ...+..+.+++| +..++.+.|++.+.+..+ +.|+++++++++.+|.+++.+++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVP--------------VRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEee--------------EEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 766654332 233455556666 557888999999998877 7999999999999999999999999
Q ss_pred HHHHHH
Q 007434 311 AILEES 316 (604)
Q Consensus 311 ~l~~~~ 316 (604)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 998763
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.29 E-value=5.3e-12 Score=110.21 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccc
Q 007434 156 TLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (604)
Q Consensus 156 ~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~ 235 (604)
+.|++++++.+++.+.+.+++++|+|++.|+++ .+......+.+... ...+...+.+.+++.+++++.++|...++++
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHY-QRAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHH-HHHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHH-HhhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 468899999999999999999999999999887 55554444332110 1123355678899999999999998877665
Q ss_pred ccccc-ccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007434 236 RPLAG-KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILE 314 (604)
Q Consensus 236 ~~~~~-~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~ 314 (604)
..... ....|..+.+++| +..++.++|++.+.+..++.|+++++++++.+|++++.+|++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFP--------------LVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEE--------------EESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEec--------------eEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43211 1122445555666 55588899999999998999999999999999999999999998765
Q ss_pred HH
Q 007434 315 ES 316 (604)
Q Consensus 315 ~~ 316 (604)
++
T Consensus 145 ~l 146 (151)
T 3hcy_A 145 AR 146 (151)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 48
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.28 E-value=3.7e-11 Score=121.77 Aligned_cols=163 Identities=11% Similarity=0.141 Sum_probs=123.9
Q ss_pred HHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhc
Q 007434 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSS 220 (604)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (604)
+..+.+.++++.+ +++|++++++.+++.+.+.+++++|+||+.|+++..+......+.........|.+.+.+++++.+
T Consensus 11 ~~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~ 89 (368)
T 1mc0_A 11 DHDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVED 89 (368)
T ss_dssp HHHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHH
T ss_pred cchHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhc
Confidence 3356788889999 899999999999999999999999999999988776655544432222334567788899999999
Q ss_pred CCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCccccccc--ceEEEEEEecCCC-ccccchhhHHHHH
Q 007434 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTK--RYALMVLMLPSDS-ARQWHVHELELVE 297 (604)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~--~~~~gvl~~~~~~-~~~~~~~e~~ll~ 297 (604)
++++.++|...+++ .........+..+.+++| +..+ +.+.|++.+.... ++.|+++|.++++
T Consensus 90 ~~~~~i~d~~~~~~-~~~~~~~~~~~~s~l~vP--------------l~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~ 154 (368)
T 1mc0_A 90 KQCIQLKDLTSDDV-QQLQNMLGCELQAMLCVP--------------VISRATDQVVALACAFNKLGGDFFTDEDEHVIQ 154 (368)
T ss_dssp CCCEEGGGSCHHHH-HHHHHHHCSCCCCEEEEE--------------EECTTTCSEEEEEEEEEESSCSSCCSHHHHHHH
T ss_pred CCeEEecccccccc-cccccccCcccceEEEEE--------------eecCCCCcEEEEEEeecCCCCCCCCHHHHHHHH
Confidence 99999999877664 111111122244555555 4444 7888888866554 4569999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007434 298 VVADQVAVALSHAAILEESMRA 319 (604)
Q Consensus 298 ~la~~~a~al~~a~l~~~~~~~ 319 (604)
.++.+++.++++++++++.++.
T Consensus 155 ~la~~~~~al~~~~l~~~~~~~ 176 (368)
T 1mc0_A 155 HCFHYTGTVLTSTLAFQKEQKL 176 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875543
No 49
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=99.25 E-value=3e-10 Score=102.24 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=125.1
Q ss_pred HHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhh-cCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHH
Q 007434 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-ALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQV 217 (604)
Q Consensus 139 ~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l-~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 217 (604)
++.....+.+++..+....|+++.++.+++.+.+.+ +++++++|+.|++ .+.+....+. .....++.+.+.++++
T Consensus 24 ~~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~a 99 (195)
T 1vhm_A 24 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTA 99 (195)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHH
Confidence 344467788999999999999999999999999999 9999999999873 4444333332 2355678899999999
Q ss_pred hhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHH
Q 007434 218 FSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVE 297 (604)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (604)
+++++++.++|...++++... ..+..+.+++| +..++.++|++.+.+..++.|+++|.++|+
T Consensus 100 a~tg~~i~V~Dv~~~p~~~~~----~~~~~S~l~VP--------------I~~~g~viGVL~i~s~~~~~F~e~d~~~L~ 161 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHIAC----DAASNSEIVLP--------------LVVKNQIIGVLDIDSTVFGRFTDEDEQGLR 161 (195)
T ss_dssp HHHTSCEEESCTTTCTTCCCS----CCCCSEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred HhcCCEEEECCcccCcchhhc----CCCccEEEEEe--------------EeECCEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 999999999999888776532 23456777777 556889999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007434 298 VVADQVAVALSHAAIL 313 (604)
Q Consensus 298 ~la~~~a~al~~a~l~ 313 (604)
.+|.+++.++++++..
T Consensus 162 ~lA~~ia~ale~a~~~ 177 (195)
T 1vhm_A 162 QLVAQLEKVLATTDYK 177 (195)
T ss_dssp HHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999977643
No 50
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=99.24 E-value=1.6e-10 Score=97.93 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=101.3
Q ss_pred HhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCC-CCcccccCCChh
Q 007434 135 LIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN-PVGYTVPIQLPV 213 (604)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 213 (604)
+...+..+++.+.++++.| ..++.+++++.+++...+.+++++|.+|++|.+ +++......+... ..+...
T Consensus 6 ~~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~-~~l~~~aa~G~~~~l~~lr~------ 77 (160)
T 3cit_A 6 QSQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD-NGVQTTARHGSKERLSTLET------ 77 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC---CCCEEEEEESCHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC-CceeeeeccCchhhhhhhhc------
Confidence 3445667899999999999 778889999999999999999999999999985 4444333333110 001011
Q ss_pred HHHHhhcCCeEEeCCCCcc-ccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc-ccchh
Q 007434 214 INQVFSSNHAVKISPNCPV-ARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR-QWHVH 291 (604)
Q Consensus 214 ~~~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~-~~~~~ 291 (604)
+.+.... +++.+ .-.....+.+++|+ ...++.++|++.+.+.... .|+++
T Consensus 78 ------------~~~~~~~gpr~~~---~tg~~t~svl~vPL-------------~~~~g~~~Gvlql~N~~~~~~f~~e 129 (160)
T 3cit_A 78 ------------TADPLAIGPQWLE---RPGTHLPCVLLLPL-------------RGADEGSFGTLVLANSVAISAPDGE 129 (160)
T ss_dssp ------------CCCTTCCSCEEEE---CTTSSSCEEEEEEE-------------ECSSSSEEEEEEEEESSCCCCCCHH
T ss_pred ------------ccccccccccccc---ccCcccceeEEEee-------------ecCCCcEEEEEEEeccCCCCCCCHH
Confidence 1111111 33332 11122445556662 2567788888888665444 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 292 ELELVEVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 292 e~~ll~~la~~~a~al~~a~l~~~~~~ 318 (604)
|++.++.+|.|+|.+++|++++++++.
T Consensus 130 D~e~l~lLA~~~a~aien~rL~~~L~~ 156 (160)
T 3cit_A 130 DIESLQLLATLLAAHLENNRLLEALVA 156 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654
No 51
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.17 E-value=8.9e-10 Score=112.85 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=124.8
Q ss_pred hHHHHhHHHHHHHHHHhccCCHHHHHHHHHHH----hhhhhcCCeeEEEeecCCCCeEEEEEeeccC-CCCcccccCCCh
Q 007434 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLALEECALWMPTRTGLELQLSYTLRQQ-NPVGYTVPIQLP 212 (604)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~----~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 212 (604)
+.++.++.++++...+.+ .+++.+++.+++. +.+++++++|.||+.|+++..+......+.. ...+..+|.+.+
T Consensus 3 ~~~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g 81 (398)
T 1ykd_A 3 EVEQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKG 81 (398)
T ss_dssp CHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSH
T ss_pred hHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCc
Confidence 345567778888877754 8888866666555 8999999999999999988776655554432 233556788899
Q ss_pred hHHHHhhcCCeEEeCCCCcc---ccccccccc-cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC-----
Q 007434 213 VINQVFSSNHAVKISPNCPV---ARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD----- 283 (604)
Q Consensus 213 ~~~~v~~~~~~~~i~~~~~~---~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~----- 283 (604)
.+++++.+++++.++|...+ +++.+.... ...+..+.+++| +...++.++|++.+.+.
T Consensus 82 ~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vP-------------l~~~~g~~iGvl~l~~~~~~~~ 148 (398)
T 1ykd_A 82 IAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALP-------------LLSEQGRLVAVVQLLNKLKPYS 148 (398)
T ss_dssp HHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEE-------------EECSSCCEEEEEEEEEEBCSCC
T ss_pred hhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEE-------------EECCCCCEEEEEEEeccCCccc
Confidence 99999999999999997765 444322111 122344455555 34456888999988876
Q ss_pred ----------CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 284 ----------SARQWHVHELELVEVVADQVAVALSHAAILEESMRA 319 (604)
Q Consensus 284 ----------~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~ 319 (604)
.++.|+++|.++++.++.+++.++++++++++.++.
T Consensus 149 ~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~ 194 (398)
T 1ykd_A 149 PPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQK 194 (398)
T ss_dssp CTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998775443
No 52
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.10 E-value=3.6e-10 Score=123.94 Aligned_cols=162 Identities=10% Similarity=0.136 Sum_probs=124.5
Q ss_pred HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhh
Q 007434 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFS 219 (604)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (604)
.++.+.+.++++.++ .+|++++++.+++.+.+.+++++|+|+++|+++..+......+.........|.+ +.++++++
T Consensus 11 ~e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~ 88 (691)
T 3ibj_A 11 TDRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVE 88 (691)
T ss_dssp TTHHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHH
Confidence 345678999999999 9999999999999999999999999999998887765444433222223456778 99999999
Q ss_pred cCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCccccccc--ceEEEEEEecCC-CccccchhhHHHH
Q 007434 220 SNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTK--RYALMVLMLPSD-SARQWHVHELELV 296 (604)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~--~~~~gvl~~~~~-~~~~~~~~e~~ll 296 (604)
+++|+.++|...+++.... ........+.+++| +..+ +.++|++.+... .++.|+++|.+++
T Consensus 89 ~~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vP--------------I~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL 153 (691)
T 3ibj_A 89 DKKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVP--------------VISRATDQVVALACAFNKLEGDLFTDEDEHVI 153 (691)
T ss_dssp HCCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEE--------------EECSSSCSEEEEEEEESBSSSCCCCTTHHHHH
T ss_pred HCCeEEeccchhccccccc-cccCCccceEEEEE--------------eEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHH
Confidence 9999999998766543211 11112245556666 4444 788888886655 5568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007434 297 EVVADQVAVALSHAAILEESMR 318 (604)
Q Consensus 297 ~~la~~~a~al~~a~l~~~~~~ 318 (604)
+.++.+++.++++++++++.++
T Consensus 154 ~~la~~~a~al~~a~l~~~~~~ 175 (691)
T 3ibj_A 154 QHCFHYTSTVLTSTLAFQKEQK 175 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876544
No 53
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=99.09 E-value=2.6e-09 Score=104.02 Aligned_cols=175 Identities=9% Similarity=0.006 Sum_probs=114.2
Q ss_pred HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee--ccCCCCcccccCC--ChhHH
Q 007434 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPIQ--LPVIN 215 (604)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~ 215 (604)
.+..+.+++++.+|++++|++++++++++++++++++|||.||.+++++....++-+. +.++..|..+|.. .....
T Consensus 143 ~~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar 222 (337)
T 2ool_A 143 NEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSR 222 (337)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHH
Confidence 3456789999999999999999999999999999999999999998876654444333 3345556656552 33566
Q ss_pred HHhhcCCeEEeCCCCccccc----------ccc--ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC
Q 007434 216 QVFSSNHAVKISPNCPVARL----------RPL--AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD 283 (604)
Q Consensus 216 ~v~~~~~~~~i~~~~~~~~~----------~~~--~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~ 283 (604)
..+..++...+.|....+.- .+. ...+..+....-..-+-..+..+++.+|++.. +..+|++.++..
T Consensus 223 ~ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~-~~LWGLl~~Hh~ 301 (337)
T 2ool_A 223 ALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD-NRLWGMISCHNL 301 (337)
T ss_dssp HHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-TEEEEEEEEEES
T ss_pred HHHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC-CeeEEEEEEecC
Confidence 67888888888886543210 000 00000000000000000112222344454544 555556655556
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 284 SARQWHVHELELVEVVADQVAVALSHAAILEE 315 (604)
Q Consensus 284 ~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~ 315 (604)
.+|.|+..++.+++.++.+++++|++++.+++
T Consensus 302 ~pR~w~~~e~~~~e~la~~l~iai~q~e~~~~ 333 (337)
T 2ool_A 302 TPRFVSYEVRQACELIAQVLTWQIGVLEEAEI 333 (337)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998776654
No 54
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=99.08 E-value=5.3e-09 Score=91.21 Aligned_cols=142 Identities=11% Similarity=0.021 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhhhc-CCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCC
Q 007434 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLA-LEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNH 222 (604)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~-~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (604)
..+.++..-+....|+...+..++..+.+.++ .+.|++|+.+++ .+.+....+.. ....+|.+.+.+++++++++
T Consensus 18 ~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~~--a~~ri~~GeGv~G~va~tg~ 93 (171)
T 3rfb_A 18 MLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGGV--SCIRIALGKGVCGEAAHFQE 93 (171)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESSS--CCCEEETTSHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCCc--cceEeeCCcCHHHHHHhhCC
Confidence 45666666777889999999999999999997 999999999763 45544433332 34578889999999999999
Q ss_pred eEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHH
Q 007434 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQ 302 (604)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~ 302 (604)
++.++|...++++... .+...+.+++| +..++.++|++.+.+..++.|+++|.++|+.+|++
T Consensus 94 ~i~V~Dv~~~p~~i~~----~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 94 TVIVGDVTTYLNYISC----DSLAKSEIVVP--------------MMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp CEEESCTTSCSSCCCS----CTTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcccccc----CcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999988887432 23456667777 55678999999999999999999999999999999
Q ss_pred HHHHH
Q 007434 303 VAVAL 307 (604)
Q Consensus 303 ~a~al 307 (604)
++.++
T Consensus 156 la~~~ 160 (171)
T 3rfb_A 156 LLEKT 160 (171)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 98764
No 55
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=99.07 E-value=4.9e-09 Score=93.60 Aligned_cols=145 Identities=8% Similarity=-0.005 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHhhhhh-----cCCeeEEEeecCCC-CeEEEEEeeccCCCCcccccCCChhHHH
Q 007434 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----ALEECALWMPTRTG-LELQLSYTLRQQNPVGYTVPIQLPVINQ 216 (604)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l-----~~~~~~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (604)
...+.++...+....|+...++.+++.+.+.+ +++++++|+.|.++ ..+......+ ......++.+.+.+++
T Consensus 26 ~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g--~~~~~~i~~g~Gi~G~ 103 (180)
T 1f5m_A 26 EQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQG--KVACQMIQFGKGVCGT 103 (180)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEE--SCCCSEEETTSHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCC--CccceeecCCCcchhh
Confidence 35677777888888999999999999999999 89999999998764 5555543222 2234567889999999
Q ss_pred HhhcCCeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccc-cceEEEEEEecCCCccccchhhHHH
Q 007434 217 VFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELST-KRYALMVLMLPSDSARQWHVHELEL 295 (604)
Q Consensus 217 v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~-~~~~~gvl~~~~~~~~~~~~~e~~l 295 (604)
++.+++++.++|...++++.. ...+..+.+++| +.. ++.++|++.+++..++.|+++|.++
T Consensus 104 aa~~g~~v~v~Dv~~dp~~~~----~~~~~~S~l~vP--------------i~~~~g~viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 104 AASTKETQIVPDVNKYPGHIA----CDGETKSEIVVP--------------IISNDGKTLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp HHHHTSCEEESCGGGSTTCCC----SSTTCCEEEEEE--------------EECTTSCEEEEEEEEESSTTCCCHHHHHH
T ss_pred hhhcCCEEEeCCcccCccccc----cCcccceEEEEE--------------EEcCCCeEEEEEEeccCCCCCcCHHHHHH
Confidence 999999999999988888763 234566777777 445 7889999999999899999999999
Q ss_pred HHHHHHHHHHHH
Q 007434 296 VEVVADQVAVAL 307 (604)
Q Consensus 296 l~~la~~~a~al 307 (604)
|+.+|.+++.++
T Consensus 166 L~~la~~~a~~~ 177 (180)
T 1f5m_A 166 LEKLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 56
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=99.05 E-value=4.5e-09 Score=90.72 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=113.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhhhc-CCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCe
Q 007434 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLA-LEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHA 223 (604)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~-~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (604)
.+.++..-+....|+...+..++..+.+.++ ++.|++|+.+++ .+.+....+.. ....+|.+.+.++++++++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~~--a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGHP--ACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEESC--CCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCCc--ccEEeeCCCCHHHHHHhhCCE
Confidence 4555666667788999999999999999997 999999999864 44444333332 345788899999999999999
Q ss_pred EEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHH
Q 007434 224 VKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQV 303 (604)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~ 303 (604)
+.++|...++++... .+...+.+++| +..++.++|++.+.+..++.|+++|.++|+.+|+++
T Consensus 94 i~V~Dv~~~p~~i~~----~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIAC----DANSKSEIVVP--------------IFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCGG----GTTCSEEEEEE--------------EEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCcccccc----CcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 999999988876431 23456667777 556789999999999999999999999999999998
Q ss_pred HHHH
Q 007434 304 AVAL 307 (604)
Q Consensus 304 a~al 307 (604)
+..+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 57
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=99.04 E-value=1.3e-08 Score=104.78 Aligned_cols=174 Identities=10% Similarity=-0.004 Sum_probs=115.8
Q ss_pred HhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEe--eccCCCCcccccCC--ChhHHHH
Q 007434 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYT--LRQQNPVGYTVPIQ--LPVINQV 217 (604)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~v 217 (604)
..+.+++++.+|++++|++++++++++++++++++|||.||.+++++....++-+ .+.++..|..+|.. .......
T Consensus 136 ~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~l 215 (520)
T 3zq5_A 136 FYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRL 215 (520)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHH
Confidence 3567899999999999999999999999999999999999999888755444333 33345566666653 3456677
Q ss_pred hhcCCeEEeCCCCccccc----------cccc--cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc
Q 007434 218 FSSNHAVKISPNCPVARL----------RPLA--GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA 285 (604)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~----------~~~~--~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~ 285 (604)
+..++...+.|....+.- .+.. ..+..+....-..-+-..+..+++.+|++. ++..+|++.++...+
T Consensus 216 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~-~~~LWGLl~~Hh~~p 294 (520)
T 3zq5_A 216 FIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIK-DGHLWGLIACHHQTP 294 (520)
T ss_dssp HHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEE-TTEEEEEEEEEESSC
T ss_pred HHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEE-CCEEEEEEEEecCCC
Confidence 888999999887643220 0000 000000000000000011222334445444 455666666666689
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 286 RQWHVHELELVEVVADQVAVALSHAAILEES 316 (604)
Q Consensus 286 ~~~~~~e~~ll~~la~~~a~al~~a~l~~~~ 316 (604)
|.|+..++++++.++.+++++|.++...++.
T Consensus 295 R~w~~~er~~~e~la~~lsiai~q~e~~~~~ 325 (520)
T 3zq5_A 295 KVIPFELRKACEFFGRVVFSNISAQEDTETF 325 (520)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988777653
No 58
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=99.03 E-value=1.7e-08 Score=103.67 Aligned_cols=176 Identities=6% Similarity=-0.045 Sum_probs=116.2
Q ss_pred HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEe--eccCCCCcccccCC--ChhHH
Q 007434 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYT--LRQQNPVGYTVPIQ--LPVIN 215 (604)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 215 (604)
.+..+.+++++.+|++++|++++++++++++++++++|||.||.+++++....++-+ .+.++..|..+|.. .....
T Consensus 121 ~~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar 200 (505)
T 3nhq_A 121 TSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQAR 200 (505)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHH
Confidence 345678999999999999999999999999999999999999999888754443333 33345556666652 34566
Q ss_pred HHhhcCCeEEeCCCCcccc--cc--------ccc--cccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCC
Q 007434 216 QVFSSNHAVKISPNCPVAR--LR--------PLA--GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD 283 (604)
Q Consensus 216 ~v~~~~~~~~i~~~~~~~~--~~--------~~~--~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~ 283 (604)
..+..++...+.|....+. .. +.. ..+..+....-..-+-..+..+++.+|++.. +..+|++.++..
T Consensus 201 ~ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~-~~LWGLl~~Hh~ 279 (505)
T 3nhq_A 201 RLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG-GKLWGLFSCHHM 279 (505)
T ss_dssp HHHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS-SSEEEEEEEEES
T ss_pred HHHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC-CEEEEEEEEecC
Confidence 7788899989988765431 00 000 0000000000000000112223344554544 455566655656
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 284 SARQWHVHELELVEVVADQVAVALSHAAILEES 316 (604)
Q Consensus 284 ~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~ 316 (604)
.+|.|+..++.+++.++.+++++|.++...++.
T Consensus 280 ~pR~w~~~er~~~e~la~~ls~al~q~~~~~~~ 312 (505)
T 3nhq_A 280 SPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIA 312 (505)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999988776653
No 59
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.02 E-value=2e-09 Score=95.97 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeecc---CCCCcccccCCC--hhHHHHhhcCC-----------
Q 007434 159 RHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ---QNPVGYTVPIQL--PVINQVFSSNH----------- 222 (604)
Q Consensus 159 ~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~v~~~~~----------- 222 (604)
++++++.+++.+++.+++++|.|+++|+++........... +...+...|..+ ......+..+.
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 36789999999999999999999999887544333333222 233344444421 22333333343
Q ss_pred -------------eEEeCCCCcccccccc-ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcccc
Q 007434 223 -------------AVKISPNCPVARLRPL-AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQW 288 (604)
Q Consensus 223 -------------~~~i~~~~~~~~~~~~-~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~ 288 (604)
++.++|....+.+... ......|..+.+++| +..++..+|++.+.+..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------------LMHHQELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECC--------------CSCSSCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEE--------------EEECCEEEEEEEEEeCCCCCC
Confidence 3333333222222110 001123455555555 556777888888888899999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 007434 289 HVHELELVEVVADQVAVALSHAAIL 313 (604)
Q Consensus 289 ~~~e~~ll~~la~~~a~al~~a~l~ 313 (604)
+++|+++++.+|+++++|+++|+++
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999886
No 60
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=99.01 E-value=9.7e-09 Score=98.71 Aligned_cols=168 Identities=8% Similarity=-0.001 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee--ccCCCCcccccCC--ChhHHHH
Q 007434 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPIQ--LPVINQV 217 (604)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~v 217 (604)
..+.+++++.+|++++|++++++++++++++++++|||.||.+++++....++-+. +.++..|..+|.. .......
T Consensus 132 ~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~l 211 (327)
T 4e04_A 132 FFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRL 211 (327)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHH
Confidence 35778999999999999999999999999999999999999998887554444333 3345556666552 3456677
Q ss_pred hhcCCeEEeCCCCcccc--cc--------cc--ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc
Q 007434 218 FSSNHAVKISPNCPVAR--LR--------PL--AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA 285 (604)
Q Consensus 218 ~~~~~~~~i~~~~~~~~--~~--------~~--~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~ 285 (604)
+..++...+.|....+. .+ +. ...+..+....-..-+-..+..+++.+|++ .++..+|++.++...+
T Consensus 212 y~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~-~~~~LWGLl~~Hh~~p 290 (327)
T 4e04_A 212 YTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISIL-RGERLWGLIACHHRKP 290 (327)
T ss_dssp HHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEEEESSC
T ss_pred HHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEE-ECCEEEEEEEEecCCC
Confidence 88899888888654321 00 00 000000000000000001122223444544 4556666666677799
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 007434 286 RQWHVHELELVEVVADQVAVALSHA 310 (604)
Q Consensus 286 ~~~~~~e~~ll~~la~~~a~al~~a 310 (604)
|.|+..++.+++.++.+++++|++.
T Consensus 291 R~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 291 NYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854
No 61
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.98 E-value=1.2e-08 Score=98.34 Aligned_cols=170 Identities=6% Similarity=-0.021 Sum_probs=112.8
Q ss_pred HHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee--ccCCCCcccccC--CChhHHH
Q 007434 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPI--QLPVINQ 216 (604)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~ 216 (604)
+..+.+++++.+|++++|++++++++++++++++++|||.||.+++++....++-+. +.++..+..+|. .......
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 446788999999999999999999999999999999999999998877654444333 334555666655 2346677
Q ss_pred HhhcCCeEEeCCCCccccc--c--------cc--ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCC
Q 007434 217 VFSSNHAVKISPNCPVARL--R--------PL--AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDS 284 (604)
Q Consensus 217 v~~~~~~~~i~~~~~~~~~--~--------~~--~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~ 284 (604)
.+..++...+.|....+.- . +. ...+..+....-..-+-..+..+++.+|++. ++..+|++.++...
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~-~~~LWGLL~~Hh~~ 307 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVV-GGQLWGLIACHHQT 307 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEE-TTEEEEEEEEEESS
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEE-CCEEEEEEEEEcCC
Confidence 8888899888886654320 0 00 0000000000000000011222234445444 45666666666689
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHH
Q 007434 285 ARQWHVHELELVEVVADQVAVALSHAA 311 (604)
Q Consensus 285 ~~~~~~~e~~ll~~la~~~a~al~~a~ 311 (604)
+|.|+..++++++.++.+++++|....
T Consensus 308 pR~w~~~er~~~e~la~~lsiaI~~~~ 334 (343)
T 3s7o_A 308 PYVLPPDLRTTLESLGRLLSLQVQVKE 334 (343)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998543
No 62
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.92 E-value=1.1e-08 Score=81.36 Aligned_cols=151 Identities=11% Similarity=0.225 Sum_probs=110.8
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCC---cccccC---CChhHHHHhhcCCe
Q 007434 150 THEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPV---GYTVPI---QLPVINQVFSSNHA 223 (604)
Q Consensus 150 ~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~v~~~~~~ 223 (604)
++.++.-.|.++++...++.+.++.++....+|+.|.+...+..+.+.+.+... -...|. --+.....++..+.
T Consensus 5 ~er~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~h 84 (162)
T 3eea_A 5 SERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQH 84 (162)
T ss_dssp -CCGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCC
T ss_pred hHhHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCc
Confidence 344667789999999999999999999999999999999999888887765311 122333 34677888888888
Q ss_pred EEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCcc-ccchhhHHHHHHHHHH
Q 007434 224 VKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR-QWHVHELELVEVVADQ 302 (604)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~-~~~~~e~~ll~~la~~ 302 (604)
...+|.....-+.+.-... -+....+.+| +..+++++|++.+.+...+ .|+++|+.++..+|++
T Consensus 85 ll~~dp~~s~l~tp~l~k~-~~~~~ILgVP--------------L~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAah 149 (162)
T 3eea_A 85 LMLTDPGSSDLLTPKLRKL-LRNLCVLAVP--------------MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSH 149 (162)
T ss_dssp EEESCGGGCTTSCHHHHHH-TTTEEEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCcchhccHHHHHH-HhhCeEEEec--------------ceeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHH
Confidence 7777654433333221111 1233344444 7778999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 007434 303 VAVALSHAAILEE 315 (604)
Q Consensus 303 ~a~al~~a~l~~~ 315 (604)
+|+|+++++++++
T Consensus 150 AAIAIdnArLldE 162 (162)
T 3eea_A 150 AALVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHhhhhcC
Confidence 9999999998764
No 63
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.80 E-value=5.5e-10 Score=125.44 Aligned_cols=172 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCC--eEEE------EEeeccC--CCCccc
Q 007434 137 RTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGL--ELQL------SYTLRQQ--NPVGYT 206 (604)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~--~~~~------~~~~~~~--~~~~~~ 206 (604)
+++.++++.|.+++..+.+++|++++++.+++.+.+.+++++|+|++.|+++. ...+ ..+.... ......
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45556788999999999999999999999999999999999999999987743 1111 1111111 123445
Q ss_pred ccCCChhHHHHhhcCCeEEeCCCCccccccccccc-cCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCc
Q 007434 207 VPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA 285 (604)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~ 285 (604)
+|.+.+.+++++.+++++.++|...++++...... ...+..+. +.+|+...++.++|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~-------------L~vPL~~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSI-------------LCMPIKNHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceE-------------EEEeeEcCCCCEEEEEEEEecCC
Confidence 67788899999999999999998887776643221 11122333 34454444788899999887765
Q ss_pred c---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 286 R---QWHVHELELVEVVADQVAVALSHAAILEESMRARD 321 (604)
Q Consensus 286 ~---~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~ 321 (604)
+ .|+++|.++++.+|.+++++|++++++++.++.++
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~ 331 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENK 331 (878)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 89999999999999999999999999987655443
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.76 E-value=9.2e-10 Score=123.63 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhhHHHHhHHHHHHHHHHh-ccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeec-c-C--------CCCc
Q 007434 136 IRTQEETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR-Q-Q--------NPVG 204 (604)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~-~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~-~-~--------~~~~ 204 (604)
.+++.++.+.+.++++.+. ++.+++++++.+++.+.+++++++|.|++.|+++..+....... . . ....
T Consensus 326 ~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~ 405 (878)
T 3bjc_A 326 SLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREH 405 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccc
Confidence 3444455677778888875 46899999999999999999999999999988766543321110 0 0 1113
Q ss_pred ccccCCChhHHHHhhcCCeEEeCCCCccccccccccccC----CCceeEEEeccccccccccCCccccccc-ceEEEEEE
Q 007434 205 YTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYM----PGEVVAVRVPLLHLSNFQINDWPELSTK-RYALMVLM 279 (604)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~i~~pl~~~~~~~~~~~p~l~~~-~~~~gvl~ 279 (604)
...|...+.+++++.+++++.++|...++++........ .+..+.+ .+|+...+ +.++|++.
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L-------------~vPL~~~~~g~viGVL~ 472 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLL-------------CTPIKNGKKNKVIGVCQ 472 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEE-------------EEEEecCCCCcEEEEEE
Confidence 456667788999999999999999887777653322111 1233333 44545443 78899998
Q ss_pred ecCCCc------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 280 LPSDSA------RQWHVHELELVEVVADQVAVALSHAAILEESMRARDL 322 (604)
Q Consensus 280 ~~~~~~------~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~ 322 (604)
+.+..+ +.|+++|+++++.+|.++++||++++++++.+++.++
T Consensus 473 l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 473 LVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp -------------------------------------------------
T ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887665 6999999999999999999999999999988776543
No 65
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.65 E-value=9.6e-07 Score=95.20 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeec--cCCCCcccccCC--ChhHHHHhh
Q 007434 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR--QQNPVGYTVPIQ--LPVINQVFS 219 (604)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~v~~ 219 (604)
..+..+..+|++++|++++++++++++++++++|||.||.+++++....++-+.. .++..|..+|.. .......+.
T Consensus 132 ~~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 211 (635)
T 4eho_A 132 GTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYE 211 (635)
T ss_dssp TTSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHH
Confidence 3456677889999999999999999999999999999999988776555444333 344556666653 356777888
Q ss_pred cCCeEEeCCCCccccc-----ccc-------ccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccc
Q 007434 220 SNHAVKISPNCPVARL-----RPL-------AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQ 287 (604)
Q Consensus 220 ~~~~~~i~~~~~~~~~-----~~~-------~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~ 287 (604)
.+....+.|....+.- .+. ...+..+....-..-|-..+..+++.+| +..++..+|++.++...++.
T Consensus 212 ~~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vp-i~~~~~LWGLl~~h~~~pr~ 290 (635)
T 4eho_A 212 RQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVS-LVVGGKLWGLVACHHYLPRF 290 (635)
T ss_dssp HSCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEE-EEETTEEEEEEEEEESSCCC
T ss_pred cCCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEE-EEEcceeeeeeeeecCCCCc
Confidence 8888888885433211 000 0000000000000000011122233445 44456666777777778999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 288 WHVHELELVEVVADQVAVALSHAAILEES 316 (604)
Q Consensus 288 ~~~~e~~ll~~la~~~a~al~~a~l~~~~ 316 (604)
|+.+++.+++.++.+++++++++..+++.
T Consensus 291 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~ 319 (635)
T 4eho_A 291 IHFELRAICELLAEAIATRITALESFAQS 319 (635)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHhHHHH
Confidence 99999999999999999999988777653
No 66
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.63 E-value=9.8e-08 Score=93.11 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
.+.+++.||++||+++. ++.|.|.+.. ++. ..|+|+|||+||+++.++++|++|+++|
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~-~~~--------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKE-GGL--------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG-GGT--------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEe-CCE--------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 46799999999999994 4668877742 221 5799999999999999999999999998
Q ss_pred cccc------CCCCCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 539 AIAL------RNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 539 ~~~~------~~~~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
.... ...+-.|.||+.+..+. ++.+.+.
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr 119 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVA-----HVTITTK 119 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSS-----EEEEEEE
T ss_pred cCcchhhhccccCCcCChHHHHhhccc-----EEEEEEE
Confidence 6432 11233577887655442 5777765
No 67
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.59 E-value=1.5e-07 Score=92.43 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
.+.+++.||++||+++. +..|.|.+...+ . ..|+|.|||+||++++++.+|++|++.+
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~~~-~--------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIERGG-A--------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEGGG-T--------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEeCC-c--------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 46889999999999987 466777775322 1 4799999999999999999999998876
Q ss_pred ccc------cCCCCCcchhHHHHHHH
Q 007434 539 AIA------LRNSSGSGLGLAICKRF 558 (604)
Q Consensus 539 ~~~------~~~~~g~GlGL~i~~~i 558 (604)
... ....++.|+||+.+..+
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASISSV 107 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHHHTT
T ss_pred ccccchhhhccccCccccchhhhhcC
Confidence 421 01245689999887544
No 68
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.58 E-value=1.6e-07 Score=92.98 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
.+.+++.||++||+++. ++.|.|.+... +. ..|+|.|||+||+++.++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~~-~~--------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKDY-GV--------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEGG-GT--------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEeC-Cc--------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 36899999999999986 45677776532 22 5799999999999999999999999987
Q ss_pred ccccCC-----CCC-cchhHHHHHHH
Q 007434 539 AIALRN-----SSG-SGLGLAICKRF 558 (604)
Q Consensus 539 ~~~~~~-----~~g-~GlGL~i~~~i 558 (604)
.....+ ..| .|+||+.+..+
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSLCAL 117 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHHHHH
T ss_pred cccccchhcccccCCCCchhhhhhhh
Confidence 532111 123 38899877654
No 69
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.58 E-value=5.3e-08 Score=98.92 Aligned_cols=91 Identities=26% Similarity=0.356 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHHHHhhcC----CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 531 (604)
+...+..++.||++||++|+ ++|.|+|++....+. .+.++|+|+|+|+|+..
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~~----- 349 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHRD----- 349 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCCC-----
Confidence 34678899999999999997 357799988876332 29999999999998750
Q ss_pred hccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEEecCC
Q 007434 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 532 ~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
...+.|+||.+++.+++.+ .+.+. +.|+++++.+|+..+
T Consensus 350 ------------~~~~~G~GL~lv~~l~~~~----~~~~~--~~G~~v~~~~~~~~~ 388 (399)
T 3ke6_A 350 ------------GARGRGRGLAMAEALVSEA----RIMHG--AGGTTATLTHRLSRP 388 (399)
T ss_dssp -------------------CHHHHHTTSSEE----EEEEE--TTEEEEEEEEECEEE
T ss_pred ------------CCCCCCcHHHHHHHHHHhe----eeEEC--CCcEEEEEEEEcCCc
Confidence 1356799999999888654 45554 569999999998654
No 70
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.4e-07 Score=91.32 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccccc
Q 007434 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (604)
.+.+++.||++||+++. +..|.|.+.. ++. ..|+|+|||+||+++.++.+|++|+++|
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~~-~~~--------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFKD-YGL--------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEET-TTT--------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEEe-CCE--------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 46789999999999986 5667777642 222 5799999999999999999999999988
Q ss_pred ccccCCC------CCcchhHHHHHHHHHHcCCEEEEEec
Q 007434 539 AIALRNS------SGSGLGLAICKRFVNLMEGHIWIESE 571 (604)
Q Consensus 539 ~~~~~~~------~g~GlGL~i~~~iv~~~gG~i~i~s~ 571 (604)
.....+. +-.|.||+.+..+ . ++.+.+.
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~av----S-~l~V~sr 116 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGI----A-KLSVITT 116 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHS----S-EEEEEEE
T ss_pred CCchhhhhhhhccCccchHHHHhhcc----C-EEEEEEE
Confidence 6432111 1236777765444 2 5666665
No 71
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.44 E-value=2.2e-07 Score=92.91 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=62.1
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh----
Q 007434 454 VGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN---- 529 (604)
Q Consensus 454 ~~d~~~l~~il~nLl~NA~k~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~---- 529 (604)
.++...+.+++.|+++||+++ ..+.|.|.+... -.|+|.|||+|||++..++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~~-----------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNED-----------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECTT-----------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEcC-----------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 356778888888888888874 456677776322 1489999999999999877
Q ss_pred ----hhhccccccccc----cCCCCCcchhHHHHHHHHHHc
Q 007434 530 ----LFTKFAQNQAIA----LRNSSGSGLGLAICKRFVNLM 562 (604)
Q Consensus 530 ----if~~f~~~~~~~----~~~~~g~GlGL~i~~~iv~~~ 562 (604)
+|..++.+..-. ....++.|+||++++.+.+.+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 898876653211 112356899999999998643
No 72
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.39 E-value=4.3e-06 Score=74.60 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCcceeeeeecHHH
Q 007434 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (604)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~~~~~~l~~ 421 (604)
+..-..++...||+.|-|++|.|++++= .-++..+++..+....+. .. .+.++. ...+..
T Consensus 19 ~~~~~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~---~~----~~~~i~---------~P~la~ 78 (192)
T 1ixm_A 19 NELIHLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKH---ES----KLSNLK---------TPHLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH---HH----HHHTTT---------CHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH---HH----HHHhCC---------CHHHHH
Confidence 3344566778899999999999998862 223344444433333222 22 122211 112333
Q ss_pred HHHHHHHHhhhhhhccCcEEEEE-eCCCCCcceEccHHHHHHHHHHHHHHHhhc----CCCCcEEEEEEEe--ccccccc
Q 007434 422 VFREVLNLIKPIASVKKLLVALN-LAPDLPEYAVGDEKRLMQTLLNVVGNAVKF----TKEGNISITGFVA--KSESLRD 494 (604)
Q Consensus 422 ~l~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~d~~~l~~il~nLl~NA~k~----~~~g~i~i~~~~~--~~~~~~~ 494 (604)
++ -. ...+.+++.+.++ +++.. . ....+..+..++.|+ .||+.. ...+.|.|++... ++.
T Consensus 79 lL----l~--K~~~a~e~~i~lev~~~~s-~-l~~~~~~lgnLi~na-~~Ai~~~~~~~~~~~I~i~i~~~~~~~~---- 145 (192)
T 1ixm_A 79 DF----LT--FNWKTHYMTLEYEVLGEIK-D-LSAYDQKLAKLMRKL-FHLFDQAVSRESENHLTVSLQTDHPDRQ---- 145 (192)
T ss_dssp HH----HH--GGGSCCSSEEEEEEESSCC-C-CTTTHHHHHHHHHHH-HHHHHHHBCTTSCCEEEEEEECCCSSSS----
T ss_pred HH----HH--HHHHhccCCeEEEEecCcc-c-cCCCcHHHHHHHHHH-HHHHHhhhccCCCCeEEEEEEEecCCCE----
Confidence 32 11 1224567777773 33321 1 111334443333222 444433 2355688888765 443
Q ss_pred CCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhcccc
Q 007434 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQ 536 (604)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 536 (604)
+.|.|.|+|++++++.++++|+..++
T Consensus 146 ----------------l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 146 ----------------LILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ----------------CEEEEEEESCBSCGGGCC--------
T ss_pred ----------------EEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 88999999999999999999985543
No 73
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.13 E-value=9.3e-07 Score=81.35 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.||+.||+++.. .+.+.|.+...++. ..|+|.|||+||++++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 578899999999753 24455555554443 4689999999999999
Q ss_pred hhhhhhccccccc----------cccCCCCCcchhHHHHHHHHHH------------------cCCEEEEEec----CCC
Q 007434 527 IPNLFTKFAQNQA----------IALRNSSGSGLGLAICKRFVNL------------------MEGHIWIESE----GLG 574 (604)
Q Consensus 527 ~~~if~~f~~~~~----------~~~~~~~g~GlGL~i~~~iv~~------------------~gG~i~i~s~----~~g 574 (604)
+...|..+.+... ......+..|+|++.+..+++. .+|.+.+... ..+
T Consensus 89 l~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 168 (220)
T 2wer_A 89 LINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIG 168 (220)
T ss_dssp HHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSSSCCCS
T ss_pred HHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccCCCCCC
Confidence 8877765433210 0111123468898766544321 1345555543 246
Q ss_pred ceEEEEEEEE
Q 007434 575 KGCTAIFIVK 584 (604)
Q Consensus 575 ~Gt~~~~~lp 584 (604)
.||++.+.|+
T Consensus 169 ~GT~I~l~Lk 178 (220)
T 2wer_A 169 RGTILRLFLK 178 (220)
T ss_dssp SEEEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 7898888764
No 74
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.05 E-value=3e-05 Score=62.96 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 331 DSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDL 402 (604)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (604)
.....++++..+.+.+|++.++||++||++.+.++++.+.+. .....+.+...++++..+++++++|
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 47 ERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444446677899999999999999999999987543 2344588999999999999999887
No 75
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.87 E-value=1e-05 Score=75.86 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.+|+.||+++.. .+.+.|.+...++. -.|+|.|||.||++++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 367899999998753 24566666554433 3689999999999999
Q ss_pred hhhhhhcccccccc----------ccCCCCCcchhHHHHHHHHHH------------------cCCEEEEEec---CCCc
Q 007434 527 IPNLFTKFAQNQAI----------ALRNSSGSGLGLAICKRFVNL------------------MEGHIWIESE---GLGK 575 (604)
Q Consensus 527 ~~~if~~f~~~~~~----------~~~~~~g~GlGL~i~~~iv~~------------------~gG~i~i~s~---~~g~ 575 (604)
+...|..+.+.... .....+..|+|++.+..+++. .+|.+.+... ..+.
T Consensus 131 L~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~ 210 (264)
T 1yc1_A 131 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGR 210 (264)
T ss_dssp HHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSS
T ss_pred HHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecCCCCCCC
Confidence 87766554432211 011223468999877665431 1244555542 1356
Q ss_pred eEEEEEEE
Q 007434 576 GCTAIFIV 583 (604)
Q Consensus 576 Gt~~~~~l 583 (604)
||++.+.|
T Consensus 211 GT~I~l~L 218 (264)
T 1yc1_A 211 GTKVILHL 218 (264)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 88877775
No 76
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.85 E-value=3.2e-06 Score=78.35 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.||+.||+++.. +..+.|.+....+. ..|+|.|||.||++++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 478899999999852 33344555444333 3599999999999999
Q ss_pred hhhhhhcccc
Q 007434 527 IPNLFTKFAQ 536 (604)
Q Consensus 527 ~~~if~~f~~ 536 (604)
+...|..+.+
T Consensus 110 l~~~~~~ia~ 119 (235)
T 2ior_A 110 VIDHLGTIAK 119 (235)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHHHHcc
Confidence 9887755543
No 77
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.83 E-value=1.9e-06 Score=80.86 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch
Q 007434 463 TLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (604)
Q Consensus 463 il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 527 (604)
+|.+|++||.++.. .+.+.|.+....+. -.|+|.|||+||+.+.+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 68899999998742 23355555554443 46899999999999998
Q ss_pred hhhhhccccc-cc--------------cccCCCCCcchhHHHHHHHHH-----------------HcCCEEEEEecC---
Q 007434 528 PNLFTKFAQN-QA--------------IALRNSSGSGLGLAICKRFVN-----------------LMEGHIWIESEG--- 572 (604)
Q Consensus 528 ~~if~~f~~~-~~--------------~~~~~~~g~GlGL~i~~~iv~-----------------~~gG~i~i~s~~--- 572 (604)
...|....+. .. ......+.-|+|++.+..+.+ ..||.+.+....
T Consensus 92 ~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~i~~~~~~~ 171 (269)
T 1qy5_A 92 VKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGN 171 (269)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEEEEECTTCS
T ss_pred HHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEEEEeccCCC
Confidence 7666443221 10 000011346889887765432 112455665431
Q ss_pred -CCceEEEEEEEEe
Q 007434 573 -LGKGCTAIFIVKL 585 (604)
Q Consensus 573 -~g~Gt~~~~~lp~ 585 (604)
.+.||++++.|+-
T Consensus 172 ~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 172 TLGRGTTITLVLKE 185 (269)
T ss_dssp CSSSEEEEEEEECG
T ss_pred cCCCCeEEEEEEcc
Confidence 3679988887753
No 78
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.64 E-value=1.1e-05 Score=73.89 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
-++.+|+.||.++.. .+.+.|.+...++. -.|+|.|||.||+++.
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~--------------------~~i~V~DnG~GMs~ed 94 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 94 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCe--------------------eEEEEEeCCCCCCHHH
Confidence 356788888887641 12455555544443 3689999999999999
Q ss_pred hhhhhhccccccc----------cccCCCCCcchhHHHHHHH
Q 007434 527 IPNLFTKFAQNQA----------IALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 527 ~~~if~~f~~~~~----------~~~~~~~g~GlGL~i~~~i 558 (604)
+...|....+.+. ......+--|+||+.+-.+
T Consensus 95 l~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v 136 (228)
T 3t0h_A 95 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV 136 (228)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT
T ss_pred HHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc
Confidence 8766544322111 0111234468888876544
No 79
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.63 E-value=0.00012 Score=73.08 Aligned_cols=77 Identities=14% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhc---CCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc--------hhh
Q 007434 461 MQTLLNVVGNAVKF---TKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD--------IPN 529 (604)
Q Consensus 461 ~~il~nLl~NA~k~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~ 529 (604)
.+++.++++||++. .....|.|.+... . .|+|.|||+|||.+. .+.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~--g---------------------~I~V~DnG~GIp~~~~~~~~~~~~e~ 89 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHAD--Q---------------------SLEVIDDGRGMPVDIHPEEGVPAVEL 89 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTT--S---------------------CEEEEECSSCCCCSBCTTTCSBHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecC--C---------------------EEEEEECCCCcCcccccccCcchhhh
Confidence 45555555555555 3355677776432 1 489999999999998 677
Q ss_pred hhhccccccccc---cCCCCC-cchhHHHHHHHHH
Q 007434 530 LFTKFAQNQAIA---LRNSSG-SGLGLAICKRFVN 560 (604)
Q Consensus 530 if~~f~~~~~~~---~~~~~g-~GlGL~i~~~iv~ 560 (604)
+|..+..+..-. .....| .|.||+.+..+.+
T Consensus 90 v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 90 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp HHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred eeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 888865543211 011223 8999999988764
No 80
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.49 E-value=0.00047 Score=55.68 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007434 337 AETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLS 403 (604)
Q Consensus 337 ~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (604)
++...+...+++..++|++++|++.+.+.++.+... ..+..+.+...+.++..+++++++++
T Consensus 53 l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 53 LKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345567899999999999999999999977543 24567788899999999999998775
No 81
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.47 E-value=0.0004 Score=69.19 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhcC---CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch--------
Q 007434 459 RLMQTLLNVVGNAVKFT---KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI-------- 527 (604)
Q Consensus 459 ~l~~il~nLl~NA~k~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~-------- 527 (604)
.+..++.++++||++.+ ....|.|.+... . .|+|.|||+|||.+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~--g---------------------~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHAD--N---------------------SVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTT--S---------------------CEEEEECSSCCCCSBCTTTSSBHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCC--C---------------------EEEEEECCCCcccCcccccCcchH
Confidence 67888888888888873 345576665432 1 4899999999999984
Q ss_pred hhhhhcccccccccc--CC-CCC-cchhHHHHHHHHH
Q 007434 528 PNLFTKFAQNQAIAL--RN-SSG-SGLGLAICKRFVN 560 (604)
Q Consensus 528 ~~if~~f~~~~~~~~--~~-~~g-~GlGL~i~~~iv~ 560 (604)
+.+|..+..+..-.. .. ..| .|.||+.+..+.+
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 447775443321110 11 123 7999999887764
No 82
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=97.45 E-value=2.3e-05 Score=72.46 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.+|++||.++.. ...+.|.+..+++. -.|+|.|||.||++++
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnG~GMt~ed 122 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCc--------------------eEEEEecCCCCcCHHH
Confidence 457788888887642 12355555544443 3689999999999998
Q ss_pred hhhhhhccccccc----------cccCCCCCcchhHHHHHHHH
Q 007434 527 IPNLFTKFAQNQA----------IALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 527 ~~~if~~f~~~~~----------~~~~~~~g~GlGL~i~~~iv 559 (604)
+..-|....+.+. ......+--|+||+.+-.+.
T Consensus 123 l~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Va 165 (256)
T 3o0i_A 123 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 165 (256)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred HHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccC
Confidence 8655533221110 01112345688888765443
No 83
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.43 E-value=1.7e-05 Score=73.43 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.+|+.||+++.. .+.+.|.+..+++. -.|+|.|||+||+.++
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~--------------------~~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 94 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC--------------------CEEEEEECCcCCCHHH
Confidence 457889999988742 22244444444332 3689999999999999
Q ss_pred hhhhhhcc
Q 007434 527 IPNLFTKF 534 (604)
Q Consensus 527 ~~~if~~f 534 (604)
+...|...
T Consensus 95 l~~~l~~i 102 (236)
T 2gqp_A 95 LVKNLGTI 102 (236)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhh
Confidence 88777554
No 84
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.39 E-value=6e-05 Score=70.41 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=28.3
Q ss_pred EEEEEecCCCCCcCchhhhhhcc-cccc----------ccccCCCCCcchhHHHHHHH
Q 007434 512 RVQVKDSGSGISPQDIPNLFTKF-AQNQ----------AIALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f-~~~~----------~~~~~~~~g~GlGL~i~~~i 558 (604)
.|+|.|||+||+.+.+..-+... .++. .......+.-|+|++.+-.+
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc
Confidence 68999999999999876433211 1110 01112245568999877554
No 85
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.24 E-value=0.00032 Score=72.77 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcC---------------CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFT---------------KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~---------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.+|++||+++. .++.+.|.+....+. -.|+|.|||+||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 45789999999886 122233444344332 3689999999999999
Q ss_pred hhhhhhccccccc------------cccCCCCCcchhHHHHHHHHH------H---------------cCCEEEEEec-C
Q 007434 527 IPNLFTKFAQNQA------------IALRNSSGSGLGLAICKRFVN------L---------------MEGHIWIESE-G 572 (604)
Q Consensus 527 ~~~if~~f~~~~~------------~~~~~~~g~GlGL~i~~~iv~------~---------------~gG~i~i~s~-~ 572 (604)
+..-+....+... ......+.-|+|++.+..+++ + -||...++.. .
T Consensus 90 l~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~ 169 (559)
T 1y4s_A 90 VIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITK 169 (559)
T ss_dssp HHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECC
T ss_pred HHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCC
Confidence 8776654322211 011123445899877666532 1 1334455432 2
Q ss_pred CCceEEEEEEEE
Q 007434 573 LGKGCTAIFIVK 584 (604)
Q Consensus 573 ~g~Gt~~~~~lp 584 (604)
.+.||++.+.|.
T Consensus 170 ~~~GT~I~L~Lk 181 (559)
T 1y4s_A 170 EDRGTEITLHLR 181 (559)
T ss_dssp CSCEEEEEEEEC
T ss_pred CCCCeEEEEEEc
Confidence 467888887753
No 86
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.23 E-value=9.8e-05 Score=67.49 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=28.5
Q ss_pred EEEEEEecCCCCCcCchhhhhh-cccccc---------ccccCCCCCcchhHHHHHHHH
Q 007434 511 LRVQVKDSGSGISPQDIPNLFT-KFAQNQ---------AIALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 511 ~~i~V~D~G~Gi~~~~~~~if~-~f~~~~---------~~~~~~~~g~GlGL~i~~~iv 559 (604)
-.|+|.|||+||+++++..-+. ...+++ .......+.-|+|++.+-.+.
T Consensus 86 ~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~va 144 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 144 (239)
T ss_dssp TEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccC
Confidence 4689999999999998743221 111110 001112345689998775554
No 87
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.19 E-value=0.00096 Score=65.89 Aligned_cols=76 Identities=8% Similarity=-0.016 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHhhcC---CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhh
Q 007434 456 DEKRLMQTLLNVVGNAVKFT---KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 532 (604)
+...+..++.++++||++.+ ....|.|.+.. +. .|+|+|||.|||. +.+|.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~--~g---------------------~I~V~DnGrGIp~---e~v~~ 80 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGG--DG---------------------SIALFCTSRTVTA---ENLVR 80 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT--TS---------------------CEEEEEEESSCCH---HHHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC--CC---------------------EEEEEECCCCcCH---hHeee
Confidence 55689999999999999973 23456666542 21 4899999999998 56664
Q ss_pred cccccccccc---CCCCCcchhHHHHHHH
Q 007434 533 KFAQNQAIAL---RNSSGSGLGLAICKRF 558 (604)
Q Consensus 533 ~f~~~~~~~~---~~~~g~GlGL~i~~~i 558 (604)
...++|-... ...+-+| |++.+..+
T Consensus 81 lhagsKf~~~~~~~~y~vsG-Gls~vnal 108 (369)
T 3cwv_A 81 VATGAGFLGRPPGDGWGWDS-MLVVSLAL 108 (369)
T ss_dssp HHTTTTGGGSSCCCSTTTTS-SHHHHHHT
T ss_pred eecCCCcCCCcccccccccC-HHHHHHHh
Confidence 4433332210 1233345 87776655
No 88
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=97.16 E-value=0.00096 Score=59.88 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhc---CCCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch--------hh
Q 007434 461 MQTLLNVVGNAVKF---TKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI--------PN 529 (604)
Q Consensus 461 ~~il~nLl~NA~k~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~ 529 (604)
..++.+|++||+++ .....|.|.+. ++. .|+|+|||.|||.+.. +.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~--~~g---------------------~i~V~DnG~GIp~~~~~~~~~~~~e~ 75 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILH--ADQ---------------------SLEVIDDGRGMPVDIHPEEGVPAVEL 75 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS---------------------CEEEEECSSCCCCSBCTTCSSBHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEe--CCC---------------------EEEEEECCCCcCcccccccCcchhhe
Confidence 77888999999988 33456777653 221 4899999999999884 34
Q ss_pred h-hhccccccccc---cCCCCCcchhHHHHHHHH
Q 007434 530 L-FTKFAQNQAIA---LRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 530 i-f~~f~~~~~~~---~~~~~g~GlGL~i~~~iv 559 (604)
+ +....++|-.. ....+-.|.||+.+..+.
T Consensus 76 i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 76 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp HHHCC---------------------CHHHHHTE
T ss_pred eeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 3 34443333210 011223688888887765
No 89
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=97.11 E-value=0.0028 Score=60.12 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhhhhcCCeeEEEeecCCC-CeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccc
Q 007434 159 RHTILKTTLVELGRTLALEECALWMPTRTG-LELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRP 237 (604)
Q Consensus 159 ~~~il~~~~~~~~~~l~~~~~~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~ 237 (604)
+..+.+.+++.+.+..+.+.++||.+++++ .........+. ......+++.+++++++++...+.+.......
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~~~-- 97 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLERGE-- 97 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC---------
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhccc--
Confidence 345578889999999999999999887766 33322222222 12455689999999999999998764221100
Q ss_pred cccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 007434 238 LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAIL 313 (604)
Q Consensus 238 ~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~ 313 (604)
........+++ |++..++...|++++.......|+++.+.+|..++++++.+++++...
T Consensus 98 ----~~~~sryL~vi-------------PLld~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 98 ----QRAHSAAAVCV-------------PLVDTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ----------CCEEE-------------EEECTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ----cccccceEEEE-------------EeecCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 00112333344 446588999999999999999999999999999999999999877654
No 90
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0004 Score=73.35 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch
Q 007434 463 TLLNVVGNAVKFTK---------------EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (604)
Q Consensus 463 il~nLl~NA~k~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 527 (604)
++.+|++||.++.. .+.+.|.+....+. -.|+|+|||+||+.+++
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~edl 89 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAEL 89 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC--------------------CEEEEEECCCCCCHHHH
Confidence 67889999988751 22344444444433 35899999999999987
Q ss_pred hhhhhcc-ccccc---------cccCCCCCcchhHHHHHHHHH------------------HcCCEEEEEe----cCCCc
Q 007434 528 PNLFTKF-AQNQA---------IALRNSSGSGLGLAICKRFVN------------------LMEGHIWIES----EGLGK 575 (604)
Q Consensus 528 ~~if~~f-~~~~~---------~~~~~~~g~GlGL~i~~~iv~------------------~~gG~i~i~s----~~~g~ 575 (604)
..-+... +++.. ......+.-|+|++.+-..++ .-||...+.. .+.+.
T Consensus 90 ~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~ 169 (677)
T 2cg9_A 90 INNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGR 169 (677)
T ss_dssp HGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSS
T ss_pred HHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCC
Confidence 6655332 22110 011123445888876543321 1245566665 22467
Q ss_pred eEEEEEEEE
Q 007434 576 GCTAIFIVK 584 (604)
Q Consensus 576 Gt~~~~~lp 584 (604)
||++.+.|.
T Consensus 170 GT~I~L~Lk 178 (677)
T 2cg9_A 170 GTILRLFLK 178 (677)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999888864
No 91
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.93 E-value=0.0029 Score=63.01 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhcC---C-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc------
Q 007434 457 EKRLMQTLLNVVGNAVKFT---K-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD------ 526 (604)
Q Consensus 457 ~~~l~~il~nLl~NA~k~~---~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~------ 526 (604)
..-|.+++.++++||++.+ . ...|.|.+...++ .|+|.|||.|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~----------------------~I~V~DnGrGIPv~~h~~~~~ 107 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN----------------------LISIWNNGKGIPVVEHKVEKM 107 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT----------------------EEEEEEESSCCCCSEETTTTE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCC----------------------EEEEEECCCcccCccccccCc
Confidence 3568999999999999885 1 4556666654322 489999999999987
Q ss_pred --hhhhhhccc-ccccc---ccCCCCCcchhHHHHHHH
Q 007434 527 --IPNLFTKFA-QNQAI---ALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 527 --~~~if~~f~-~~~~~---~~~~~~g~GlGL~i~~~i 558 (604)
.+.+|.... +++-. ..-..+-.|.|++.+..+
T Consensus 108 ~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 108 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp EHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred cchhheeeeecccCCCCCCcccccCCccccceeeeEEe
Confidence 444665322 22210 011233479999988766
No 92
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=96.92 E-value=0.00036 Score=73.47 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcC---------------CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFT---------------KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~---------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
.++.+|++||+++. .++.+.|.+..+++. -.|+|+|||+||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 46889999999885 122234444444332 3689999999999999
Q ss_pred hhhhhhcccccccc------------ccCCCCCcchhHHHHHHHH
Q 007434 527 IPNLFTKFAQNQAI------------ALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 527 ~~~if~~f~~~~~~------------~~~~~~g~GlGL~i~~~iv 559 (604)
+..-+....+.... .....+.-|+|++.+..+.
T Consensus 90 l~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 90 VIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp HHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred HHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 77655443222110 0001123488998777665
No 93
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=96.90 E-value=0.0024 Score=57.96 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch-------
Q 007434 458 KRLMQTLLNVVGNAVKFT---KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI------- 527 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~------- 527 (604)
..+..++.++++||++.+ ....|.|.+.. +. .|+|.|||.|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~--~g---------------------~i~V~DnGrGIp~~~~~~~~~~~ 90 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA--DN---------------------SVSVQDDGRGIPTGIHPEEGVSA 90 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT--TS---------------------CEEEEECSSCCCCSEETTTTEEH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC--CC---------------------cEEEEECCcCcccccccccCcch
Confidence 568889999999999874 24456666543 22 3899999999999874
Q ss_pred -hhhhhcccc-cccc---ccCCCCCcchhHHHHHHHH
Q 007434 528 -PNLFTKFAQ-NQAI---ALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 528 -~~if~~f~~-~~~~---~~~~~~g~GlGL~i~~~iv 559 (604)
+.+|..... ++-. .....+-.|.|++.+..+-
T Consensus 91 ~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 91 AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp HHHHHHSTTCSSCCCTTC--------CCCHHHHHHTE
T ss_pred hhheeeecccCCCcCCCccccccCccceecchhcccc
Confidence 345532222 1110 0011223789999888765
No 94
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=96.79 E-value=0.0042 Score=56.48 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc------
Q 007434 456 DEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD------ 526 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~------ 526 (604)
+..-|.+++.+++.||++... ...|.|.+. .+. .|+|.|||.|||.+.
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~--~~g---------------------~i~V~DnG~GIp~~~h~~~~~ 93 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN--KDG---------------------SLTVQDHGRGMPTGMHAMGIP 93 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS---------------------CEEEEECSSCCCCSBCGGGCB
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEe--CCC---------------------eEEEEEcCCCccccccccCce
Confidence 456688999999999998742 344665543 222 489999999999998
Q ss_pred -hhhhhhcccc-cccc---ccCCCCCcchhHHHHHHHH
Q 007434 527 -IPNLFTKFAQ-NQAI---ALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 527 -~~~if~~f~~-~~~~---~~~~~~g~GlGL~i~~~iv 559 (604)
.+.+|..... ++-. .....+-.|.|++.+..+-
T Consensus 94 ~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS 131 (226)
T 4emv_A 94 TVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALS 131 (226)
T ss_dssp HHHHHHHCBC--------------CGGGCCHHHHHHTE
T ss_pred ehheeEEeecccCccCccceEeccccccccchhhhhcc
Confidence 6666643322 1110 0111234789998887664
No 95
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=96.79 E-value=0.0049 Score=50.42 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=75.8
Q ss_pred HHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCcccccccccccc
Q 007434 163 LKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKY 242 (604)
Q Consensus 163 l~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (604)
.+..++.+.+.+++ .++|. +....+++.+...... ...++ ......++++++...+.+.....-.. ..
T Consensus 4 a~~~AeiI~~~~~~-aV~It-----D~~~ilA~~G~g~~~~-~~~~i-s~~~~~~i~~~k~~~~~~~~~~~~~~---~~- 71 (123)
T 2w1r_A 4 AKEYADALYDSLGH-SVLIC-----DRDVYIAVSGSSKKDY-LNKSI-SEMLERTMDQRSSVLESDAKSVQLVN---GI- 71 (123)
T ss_dssp HHHHHHHHHHHHCS-EEEEE-----CSSBEEEEESSCHHHH-BTCBB-CHHHHHHHHHCSCEEESSCEEEESBT---TC-
T ss_pred HHHHHHHHHHHHCC-eEEEE-----cCccEEEEEecChhhc-CCCcc-CHHHHHHHHcCCEEEEcCCccccccC---CC-
Confidence 56788889999999 77773 3333355554432211 12456 67788999999999996543211110 00
Q ss_pred CCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHH
Q 007434 243 MPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALS 308 (604)
Q Consensus 243 ~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~ 308 (604)
.....+.+..| +..++.++|++.++ ...+.+++.+..+.+.+|..++.+++
T Consensus 72 ~~~~~s~ii~P--------------I~~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qme 122 (123)
T 2w1r_A 72 DEDMNSYTVGP--------------IVANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQME 122 (123)
T ss_dssp EEEESEEEEEE--------------EEETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC----
T ss_pred CCCeeEEEEEE--------------EEECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 00134445555 66777899999888 55566999999999999998887765
No 96
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=96.73 E-value=0.00045 Score=72.98 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcC---------------CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 462 QTLLNVVGNAVKFT---------------KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 462 ~il~nLl~NA~k~~---------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
-++.+|++||.++. .++.+.|.+..+++. -.|+|+|||+||+.++
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 46889999999885 133344444444433 2589999999999998
Q ss_pred hhhhhhc
Q 007434 527 IPNLFTK 533 (604)
Q Consensus 527 ~~~if~~ 533 (604)
+..-|..
T Consensus 108 l~~~l~t 114 (666)
T 2o1u_A 108 LVKNLGT 114 (666)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 7765543
No 97
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=96.31 E-value=0.013 Score=52.31 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHHhhcC--C-CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCc
Q 007434 456 DEKRLMQTLLNVVGNAVKFT--K-EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD 526 (604)
Q Consensus 456 d~~~l~~il~nLl~NA~k~~--~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 526 (604)
+...+..++.++++||++.+ . ...|.|.+... . .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~--g---------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD--N---------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG--G---------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC--C---------------------eEEEEECCCCccccc
Confidence 45678999999999999863 2 45677765432 1 489999999999874
No 98
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.29 E-value=0.008 Score=60.13 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhh----
Q 007434 458 KRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN---- 529 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~---- 529 (604)
.-|.+++.+++.||++.. ....|.|.+..+++ .|+|.|||+|||.+..++
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~----------------------sI~V~DnGrGIPv~~h~~~g~~ 120 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH----------------------TIEVKNDGKGIPIEIHNKENIY 120 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT----------------------EEEEEEESSCCCCSBCTTTCSB
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCCC----------------------EEEEEECCCcccCcccccCCcc
Confidence 468889999999998764 24557776654332 489999999999887443
Q ss_pred ----hhhccccccc----cccCCCCCcchhHHHHHHHH
Q 007434 530 ----LFTKFAQNQA----IALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 530 ----if~~f~~~~~----~~~~~~~g~GlGL~i~~~iv 559 (604)
+|.....+.. ...-.++-+|.|.+.+..+-
T Consensus 121 ~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS 158 (418)
T 1pvg_A 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 158 (418)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTE
T ss_pred cceEEEEEEecccccCCCceeccCCccceeeeeeeecc
Confidence 5544322111 01111334799998887664
No 99
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=96.04 E-value=0.0022 Score=58.50 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=29.3
Q ss_pred EEEEEEecCCCCCcCchhhhhhcc-ccccc----------cccCCCCCcchhHHHHHHH
Q 007434 511 LRVQVKDSGSGISPQDIPNLFTKF-AQNQA----------IALRNSSGSGLGLAICKRF 558 (604)
Q Consensus 511 ~~i~V~D~G~Gi~~~~~~~if~~f-~~~~~----------~~~~~~~g~GlGL~i~~~i 558 (604)
-.|+|.|||+||+.+++..-+... +.+.. ......+.-|+|++.+-.+
T Consensus 130 ~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV 188 (272)
T 3ied_A 130 KTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV 188 (272)
T ss_dssp TEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc
Confidence 368999999999999987655322 11100 0111234568999876544
No 100
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=95.79 E-value=0.095 Score=48.58 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhhH----HHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCCCeEEEEEee
Q 007434 122 LKNKAAELDREMGLIRTQ----EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL 197 (604)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~~~~~~~~~~ 197 (604)
+++++.+++++.+++-.. +.....+.++...+..+.+.+++++.+...+.+.++++.+.+++++......
T Consensus 77 LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~------ 150 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV------ 150 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc------
Confidence 444556666665544333 3345667788889999999999999999999999999999999887543110
Q ss_pred ccCCCCcccccC--CChhHHHHhhcCCeEEeCCCCccccccccccc-cCCCceeEEEeccccccccccCCcccccccceE
Q 007434 198 RQQNPVGYTVPI--QLPVINQVFSSNHAVKISPNCPVARLRPLAGK-YMPGEVVAVRVPLLHLSNFQINDWPELSTKRYA 274 (604)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~ 274 (604)
+...+. ....+...+..+.+..-..... ....+-+. ......+....| +..++ .
T Consensus 151 ------~~~~~~~~~~~~~~~~l~~~~py~G~l~~~--e~~~lFg~~~a~~v~S~Allp--------------L~~~~-~ 207 (252)
T 3e98_A 151 ------GRSVSSAEAHQAIGGLLSGGKTVCGVLRPH--ELAFLFGESDRDEIGSAAVVS--------------LSFQG-L 207 (252)
T ss_dssp ------SEEECHHHHHHHHHHHHTTCCCSTTCCCHH--HHHHHCCCTTGGGCCEEEEEE--------------EESSS-E
T ss_pred ------hhhccchhHHHHHHHHhCCCCceECCCCch--HHHHhcCCCccccccceEEEE--------------cCCCC-c
Confidence 000110 0112233333333321110000 00000000 000112222333 43333 7
Q ss_pred EEEEEecCCCccccch-hhHHHHHHHHHHHHHHHHH
Q 007434 275 LMVLMLPSDSARQWHV-HELELVEVVADQVAVALSH 309 (604)
Q Consensus 275 ~gvl~~~~~~~~~~~~-~e~~ll~~la~~~a~al~~ 309 (604)
.|++.+.+..+..|++ ....+|+-+|..++.++.+
T Consensus 208 ~GlLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~r 243 (252)
T 3e98_A 208 HGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPR 243 (252)
T ss_dssp EEEEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGGG
T ss_pred eEEEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 8999999999988886 5588999999988887753
No 101
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=95.53 E-value=0.0028 Score=57.53 Aligned_cols=31 Identities=19% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHcCCEEEEEecCCCceEEEEEEEEecCCCC
Q 007434 559 VNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH 590 (604)
Q Consensus 559 v~~~gG~i~i~s~~~g~Gt~~~~~lp~~~~~~ 590 (604)
+..|||+|+++|+ +|+||+|++++|+..+..
T Consensus 16 ~~~hgG~i~v~S~-~g~Gs~f~~~lP~~~~~~ 46 (206)
T 3mm4_A 16 RGSHMASTDSESE-TRVKSVRTGRKPIGNPED 46 (206)
T ss_dssp --------------------------------
T ss_pred ccccCCceeeecc-CCCcceeeeccCCCCCcc
Confidence 5689999999999 999999999999866543
No 102
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=95.38 E-value=0.015 Score=57.81 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCch--------hh
Q 007434 461 MQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI--------PN 529 (604)
Q Consensus 461 ~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~ 529 (604)
..++.++++||++.+- ...|.|.+. .+. .|+|+|||.|||.+.. +-
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~--~dg---------------------sI~V~DnGrGIPv~~h~~~~~~~~e~ 108 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLY--KDG---------------------SCEVSDDGRGMPVDIHPEEKIPGVEL 108 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEC--TTS---------------------CEEEEECSSCCCCSBCTTTCSBHHHH
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEe--CCC---------------------eEEEEEcCCCCCcccccccCCcchhe
Confidence 6778888888887642 344666653 222 3899999999999874 34
Q ss_pred hhhcccccccc----ccCCCCCcchhHHHHHHHH
Q 007434 530 LFTKFAQNQAI----ALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 530 if~~f~~~~~~----~~~~~~g~GlGL~i~~~iv 559 (604)
+|.....+..- .....+-.|.|++.+..+-
T Consensus 109 i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS 142 (408)
T 3lnu_A 109 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALS 142 (408)
T ss_dssp HHHCC--------------------CHHHHHHTE
T ss_pred EEEecccCCCcCCCceeecCCccccccceehhcc
Confidence 55332221110 0011233789998887665
No 103
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.074 Score=60.36 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhhcCC---C-CcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchh-----
Q 007434 458 KRLMQTLLNVVGNAVKFTK---E-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP----- 528 (604)
Q Consensus 458 ~~l~~il~nLl~NA~k~~~---~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~----- 528 (604)
.-|..++.+++.||++..- . ..|.|.+...++ .|+|.|||.|||-+..+
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~----------------------sisV~DnGRGIPvd~h~~~~~~ 115 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH----------------------TIEVKNDGKGIPIEIHNKENIY 115 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT----------------------EEEEEECSSCCCCSBCTTTCSB
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC----------------------EEEEEecCCcccccccCCCCCE
Confidence 3588999999999998642 2 246666554333 48999999999977543
Q ss_pred ---hhhhccccccc----cccCCCCCcchhHHHHHHHH
Q 007434 529 ---NLFTKFAQNQA----IALRNSSGSGLGLAICKRFV 559 (604)
Q Consensus 529 ---~if~~f~~~~~----~~~~~~~g~GlGL~i~~~iv 559 (604)
-+|.....+.+ ...-.++-+|.|.+.|..+-
T Consensus 116 ~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS 153 (1177)
T 4gfh_A 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 153 (1177)
T ss_dssp HHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTE
T ss_pred eeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcC
Confidence 34544322111 01111334799988887654
No 104
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=72.58 E-value=4 Score=41.83 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=44.0
Q ss_pred HHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeec
Q 007434 134 GLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPT 185 (604)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d 185 (604)
++.+++.+..+.+.++...++++.|..+++.+....+.+++++|++++|.-+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 310 RIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 3344556667778889999999999999999999999999999999998654
No 105
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=63.16 E-value=85 Score=28.16 Aligned_cols=142 Identities=8% Similarity=-0.051 Sum_probs=75.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEeecCCC---CeEEEEEeeccCC---CCcccccCCChhHHHHhhcC
Q 007434 148 MLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTG---LELQLSYTLRQQN---PVGYTVPIQLPVINQVFSSN 221 (604)
Q Consensus 148 ~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~d~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~ 221 (604)
++...+.++.+.+++.+.+ ..+.+.+|.+.+++....... ....+..+..... ......-..+|.+.++..+.
T Consensus 7 ~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~ 85 (237)
T 3szt_A 7 GYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEY 85 (237)
T ss_dssp SHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCC
Confidence 4456677788888866655 788889999999886543311 1111122211111 11122344689999999999
Q ss_pred CeEEeCCCCccccccccccccCCCceeEEEeccccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHH
Q 007434 222 HAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVAD 301 (604)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~ 301 (604)
.|...++........-.......|....+.+| +...+...|.+.+.... ..+++.++..+.....
T Consensus 86 ~p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p--------------~~~~~g~~g~ls~~~~~-~~~~~~~~~~~~~~~~ 150 (237)
T 3szt_A 86 TPLIWNGEDFQENRFFWEEALHHGIRHGWSIP--------------VRGKYGLISMLSLVRSS-ESIAATEILEKESFLL 150 (237)
T ss_dssp SCEEEETTTCSSCHHHHHHHHHTTCCEEEEEE--------------EECGGGCEEEEEEEESS-SCCCHHHHHHHHHHHH
T ss_pred CCEEeCCCCcccHHHHHHHHHHcCCCCEEEEE--------------eeCCCCCeEEEEEecCC-CcCCHHHHHHHHHHHH
Confidence 99888765321110000111123344445555 32233334455554443 3567777666554444
Q ss_pred HHHH
Q 007434 302 QVAV 305 (604)
Q Consensus 302 ~~a~ 305 (604)
.++.
T Consensus 151 ~l~~ 154 (237)
T 3szt_A 151 WITS 154 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 106
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=47.36 E-value=1.3e+02 Score=26.10 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHhhHhHHHHHHHHhcCCCCchHHH-HHHHHHHHHhhhHHHhhHHhcc
Q 007434 20 YQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVL-VQFGAFIVLCGATHLINLWTFN 77 (604)
Q Consensus 20 ~~~~sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~-~lf~~fi~~cg~thl~~i~~~~ 77 (604)
++.+.|..+ ++..++++ ++|.++++.....+.+ ..+.+ .++.-..|.++-+.+|
T Consensus 89 ~q~lldy~l--af~~~Gla-G~f~~~~~~~~~~~~~lg~~ig-~~~r~~~~~isgvvff 143 (192)
T 3rlb_A 89 SQAFLEYLV--APVSLGIA-GLFRQKTAPLKLAPVLLGTFVA-VLLKYFFHFIAGIIFW 143 (192)
T ss_dssp HHHHHHHTH--HHHHGGGG-GGGCCCSSSCCHHHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHHHHHHH-HhheeccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455667666 44455555 5565554333233333 22222 2366677777755554
No 107
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=47.18 E-value=1.4e+02 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHhhhHHHhhHHhcccchhHHHHH
Q 007434 58 FGAFIVLCGATHLINLWTFNMHSRTVAIV 86 (604)
Q Consensus 58 f~~fi~~cg~thl~~i~~~~~~~~~~~~~ 86 (604)
+|.|++++....+.= .-||..+.+..|.
T Consensus 122 lGi~LFL~evall~W-VKF~~~~~~aa~~ 149 (214)
T 4hkr_A 122 LGLILFLLEIAILCW-VKFYDLSRRAAWS 149 (214)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhe-EEeecCCcHHHHH
Confidence 344555555554331 1255555444443
No 108
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=47.00 E-value=36 Score=34.86 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=40.1
Q ss_pred hhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhhhcCCeeEEEee
Q 007434 136 IRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMP 184 (604)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~l~~~~~~i~l~ 184 (604)
.+++.+..+....+...++...|..+.+......+.+++++|++++|.-
T Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~ 373 (520)
T 3zq5_A 325 FDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFG 373 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEEC
Confidence 3444555566677888888889999999999999999999999999854
No 109
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=46.27 E-value=50 Score=34.51 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEEecccccccCCCCCCcccCCCCceEEEEEEEecCC---CCCcCchhh-----
Q 007434 461 MQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGS---GISPQDIPN----- 529 (604)
Q Consensus 461 ~~il~nLl~NA~k~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~---Gi~~~~~~~----- 529 (604)
..++.+++.||+-|.+ .+.|.|.+..-++ +|+|.+-|. |++.+.+..
T Consensus 298 ~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d----------------------riei~npG~l~~~~t~e~~~~~~s~R 355 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWNRSEPIDVRWIELDS----------------------TLIVRSPGGFPAAITSENVLSNRAAR 355 (583)
T ss_dssp HHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT----------------------EEEEEEESCCCTTCCTTSSTTCCCCS
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEecCC----------------------EEEEEcCCCCCCCCCHHHhcCCCCCC
Confidence 5577888888887753 5567766552122 477777774 555444321
Q ss_pred ---hhhccccccccccCCCCCcchhHHHHHHHHHHcCCE-EEEEecCCCceEEEEEEEEecCC
Q 007434 530 ---LFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTAIFIVKLGIP 588 (604)
Q Consensus 530 ---if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~-i~i~s~~~g~Gt~~~~~lp~~~~ 588 (604)
|.+-|.... -..+.|-|+.-+.+-.+..|.. -.+... . |..|.++||....
T Consensus 356 Np~la~~~~~~~-----~~e~~GsGi~~i~~~~~~~g~~~P~~~~~-~--~~~~~v~l~~~~~ 410 (583)
T 3lmm_A 356 YPALADLYRALG-----LVDKQGVGVDRMYQAMIALGHRPPTIEEI-A--GPFVETTLVGGRP 410 (583)
T ss_dssp CHHHHHHHHHTT-----CSCSSHHHHHHHHHHHHHTTCCCCEEEEE-T--TTEEEEEEECCSC
T ss_pred CHHHHHHHHHhC-----ccccCCcHHHHHHHHHHHcCCCCCeEEEc-C--CCEEEEEEeCCCC
Confidence 222222222 1356788888777777777764 444443 2 3577888887553
No 110
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=46.19 E-value=1.2e+02 Score=26.14 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhhH
Q 007434 344 RNDFLAVMNHEMRTP 358 (604)
Q Consensus 344 ~~~l~~~i~Hel~~p 358 (604)
...+...+.|.|...
T Consensus 32 a~~l~~~l~~~L~~i 46 (218)
T 3ehh_A 32 ARDLVDTLGQKLSLM 46 (218)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHH
Confidence 334444555555433
No 111
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=35.88 E-value=25 Score=18.22 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhHHH
Q 007434 57 QFGAFIVLCGATHL 70 (604)
Q Consensus 57 lf~~fi~~cg~thl 70 (604)
+.+.||+-|.+-|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 56779999988773
No 112
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.95 E-value=1.3e+02 Score=21.75 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.2
Q ss_pred HhhhhHHHH
Q 007434 353 HEMRTPMHA 361 (604)
Q Consensus 353 Hel~~pL~~ 361 (604)
||+|.-|..
T Consensus 65 ~elRqgLak 73 (79)
T 3cvf_A 65 SELREGLAR 73 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455544443
No 113
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.70 E-value=1.3e+02 Score=21.24 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.5
Q ss_pred HhhhhHHH
Q 007434 353 HEMRTPMH 360 (604)
Q Consensus 353 Hel~~pL~ 360 (604)
||+|.-|.
T Consensus 59 ~elrq~La 66 (72)
T 3cve_A 59 TELRDNLA 66 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 114
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=28.66 E-value=29 Score=17.97 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 007434 594 SNLSFIPKMPC 604 (604)
Q Consensus 594 ~~~~~~~~~p~ 604 (604)
++...-|++||
T Consensus 13 serpyhppppc 23 (26)
T 2jrw_A 13 SERPYHPPPPC 23 (26)
T ss_dssp CSSSCCSCSCC
T ss_pred ccCCCCCCCCC
Confidence 55667778887
No 115
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.00 E-value=1.1e+02 Score=19.18 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=9.0
Q ss_pred HHHhhHh-HHHHHHHHhcCC
Q 007434 30 LAYFSIP-LELIYFVKKSAV 48 (604)
Q Consensus 30 ~ay~~ip-~~l~y~~~~~~~ 48 (604)
++.+.+- +..+||.|+|+.
T Consensus 21 v~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhHh
Confidence 4444444 444455555554
No 116
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=27.22 E-value=1.6e+02 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=27.8
Q ss_pred CcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHH
Q 007434 264 DWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVA 306 (604)
Q Consensus 264 ~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~a 306 (604)
.+|++..++..|.|+++..+.. +++.|..+.++.|+-++-.
T Consensus 135 i~pI~~~gd~~Gavi~~~~~~~--~~~~e~k~a~~aa~fL~kq 175 (178)
T 2w1t_A 135 VGPIVANGDPIGAVVIFSKDQT--MGEVEHKAVETAAGFLARQ 175 (178)
T ss_dssp EEEEEETTEEEEEEEEEESSSC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCceEEEEEEecCCC--CCHHHHHHHHHHHHHHHHh
Confidence 3465666666666666655544 8999999988888766543
No 117
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=25.57 E-value=3.5e+02 Score=23.89 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=60.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 007434 286 RQWHVHELELVEVVADQVAVALSHAAILEESMR--ARDLLMQQNIALDSARREAETAIRARNDFLA-------------- 349 (604)
Q Consensus 286 ~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~-------------- 349 (604)
..+.+.+-.++..+..++....+.+.+..+... -..+..+...++.....+.. +.+.++..
T Consensus 19 ~~l~pke~~ff~ll~~~a~~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD---~i~~~i~~~L~~~fitP~dReD 95 (227)
T 3l39_A 19 SKFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGD---RLTHLIFDELSTTFITPFDRED 95 (227)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSCCSSCHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCcCCCCHHH
Confidence 445667777888888888888888887777644 12222222222222222211 11122222
Q ss_pred --HHHHhhhhHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 350 --VMNHEMRTPMHAIIALSSL---LQETELTPEQRLMVETILKSSNLLATLINDVLDL 402 (604)
Q Consensus 350 --~i~Hel~~pL~~i~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (604)
.+++.+-.-+..+...+.. ..-...++...++++.+..+++.+...+..+.++
T Consensus 96 I~~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~ 153 (227)
T 3l39_A 96 IHDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETF 153 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222222222222 2223457788888888888888888877776544
No 118
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=24.39 E-value=3.2e+02 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=31.7
Q ss_pred ccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHH
Q 007434 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSH 309 (604)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~ 309 (604)
+..++...|.+++... ...|+++|+-+.+-.|..++..+-+
T Consensus 126 I~g~GeRLGTLvl~r~-~~~F~ddDLILaEyaATVVGlEILr 166 (170)
T 2gx5_A 126 IIGGGERLGTLILSRL-QDQFNDDDLILAEYGATVVGMEILR 166 (170)
T ss_dssp EEETTEEEEEEEEEES-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCeEEEEEEEEec-CCCCChhHHHHHHHHHHHHHHHHHH
Confidence 6777778888876554 4579999999999888888876643
No 119
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.73 E-value=1.5e+02 Score=18.63 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=9.8
Q ss_pred HhhHhHHHHHHHHhcCC
Q 007434 32 YFSIPLELIYFVKKSAV 48 (604)
Q Consensus 32 y~~ip~~l~y~~~~~~~ 48 (604)
.+.+.+.++.|+|||+.
T Consensus 24 ~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhheehhhh
Confidence 44555555666666654
No 120
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=20.69 E-value=2.5e+02 Score=27.56 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434 53 WVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVH 107 (604)
Q Consensus 53 ~~~~lf~~fi~~cg~thl~~i~~~~~~~~~~~~~~~~~k~~ta~vs~~tai~l~~ 107 (604)
-++...+.|++....-+++.++..+.+.....++..+...+..+.|+.--+.+..
T Consensus 389 ~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~i~~~L~~~ns~~NPiIY~~ 443 (467)
T 3uon_A 389 TILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYAL 443 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3445556677666666666666554332111233333444444444444444443
Done!