BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007435
         (604 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3
          Length = 2146

 Score = 37.7 bits (86), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 164 LEGPGGVWCDVDVVEFSYYG----APAPTPKEELYTELVDGLRGSDPCIGSGSQVASQET 219
           L+GPG  + +   V+   +G     P P    +L+T L D    +DPC+G G+  +S E 
Sbjct: 227 LDGPGLQFVNNSTVQNVVFGHCPLTPGPCSDHDLFTRLPDNFCLNDPCMGHGTCSSSPEG 286

Query: 220 Y 220
           Y
Sbjct: 287 Y 287


>sp|A4H8F7|TRM5_LEIBR tRNA (guanine(37)-N1)-methyltransferase OS=Leishmania braziliensis
           GN=LBRM_16_0320 PE=3 SV=1
          Length = 698

 Score = 37.0 bits (84), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 258 PLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTT 317
           P P S   G Y+GAVE   +  T +L Y  +  +   + V      +P  ED +L  + +
Sbjct: 234 PSPSSRKRGSYVGAVEVTFASRTVELSYRNYTMSELLSMV------LPLREDADLVAL-S 286

Query: 318 SVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTD 377
             + VG I  V++     P   +IG+ ++    +  +    V A +  + + K       
Sbjct: 287 GFEQVGHIAHVNLSAAHLPYADVIGQVILDCNETVSVVVNKVDAISSVFREFK------- 339

Query: 378 FLVVGENQQTFDLEGDSG 395
             ++GE ++  DL GD G
Sbjct: 340 MNIIGERRRADDLGGDVG 357


>sp|Q54PK8|Y4491_DICDI Probable serine/threonine-protein kinase DDB_G0284491
           OS=Dictyostelium discoideum GN=DDB_G0284491 PE=3 SV=1
          Length = 1212

 Score = 33.5 bits (75), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 20  ESALDLERNYCHHPNLPSSS-PSPLQPFASGGQHSESNAAYFSWPTLS 66
           ES++D+E++      +PSS   + ++PFASGGQ +     +  WP LS
Sbjct: 848 ESSIDIEQSL----KIPSSCIETEIEPFASGGQANIYMVKHIDWPMLS 891


>sp|Q8U053|Y1764_PYRFU UPF0173 metal-dependent hydrolase PF1764 OS=Pyrococcus furiosus
           (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
           GN=PF1764 PE=3 SV=1
          Length = 225

 Score = 33.1 bits (74), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 71  AAEDRANYFGNLQKGVLPETLGRLPTGQQATTLLELMTIRAFHSKILRRFSLGTAIGFRI 130
           A  D ANY     KGV  ET+G +  G      +E++ + A+HS    ++S+G A G+ +
Sbjct: 71  AMYDLANYIAEKYKGV--ETIG-MNYGPTKVDEVEIVQVPAWHSSSDGKYSIGNACGYIV 127

Query: 131 R 131
           +
Sbjct: 128 K 128


>sp|Q2LXE3|MEND_SYNAS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
           synthase OS=Syntrophus aciditrophicus (strain SB)
           GN=menD PE=3 SV=2
          Length = 575

 Score = 33.1 bits (74), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 33  PNLPSSSPSPLQPFASGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLG 92
           P +P S P P +  A+ G+      AY ++P+   L+   ED         +G++   +G
Sbjct: 176 PGIPDSRPIPDELLATAGRLYAREGAYTTYPSPGTLHTGLEDVEAILNRTARGLI--VIG 233

Query: 93  RLPTGQQATTLLEL 106
           RL   + A  L EL
Sbjct: 234 RLDGPRDAPALEEL 247


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,616,045
Number of Sequences: 539616
Number of extensions: 11086144
Number of successful extensions: 20528
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 20524
Number of HSP's gapped (non-prelim): 15
length of query: 604
length of database: 191,569,459
effective HSP length: 123
effective length of query: 481
effective length of database: 125,196,691
effective search space: 60219608371
effective search space used: 60219608371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)