BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007440
(603 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 73/109 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQFF+T
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 73/109 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQFF+T
Sbjct: 56 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 116 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 118 bits (296), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/111 (54%), Positives = 72/111 (64%)
Query: 16 HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 75
H + P F LQGGDF+ GNGTGG+SIYG KF DENF+L HN PG+LSMAN+G NTNGSQ
Sbjct: 50 HFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQ 109
Query: 76 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 126
FFIT LD +N+VK IE G+G GKP ++I CG
Sbjct: 110 FFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 71/109 (65%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F +QGGDF++GNGTGGESIYG KF DENFK H GPG+LSMAN+G NTNGSQFF+
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD L++VK +E G+ GKP + I DCG+
Sbjct: 123 TVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 72/109 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF+ NGTGG+SIYG KF DENF L H GPG+LS ANSG NTNGSQFF+T
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 125 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 173
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 71/107 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F LQGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQFFIT
Sbjct: 55 VIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFIT 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 126
LD L+IV+K+E G+ GK +KI DCG
Sbjct: 115 TVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 71/107 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F LQGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQFFIT
Sbjct: 56 VIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFIT 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 126
LD L+IV+K+E G+ GK +KI DCG
Sbjct: 116 TVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 75 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 134
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 135 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 182
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 162
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 162
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 73/108 (67%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 73/108 (67%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 70/109 (64%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F QGGDF KG+GTGG+SIYG KF DENF+L H G G+LSMANSG NTNGSQFFI
Sbjct: 63 VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD N+VKK+E VG+ GK +PV I CGE
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 64 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 123
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 124 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 171
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 73/109 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 72/108 (66%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGIL+MAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 71/108 (65%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 71/108 (65%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +++ G+ +GK ++ + I DCG+
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQ 162
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 129
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 71/108 (65%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 56 IIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 57 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 129
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 55 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 129
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 129
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 69/108 (63%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGDF++ NGTGG+SIYG KF DENF L H GPGILS AN+G NTNGSQFFI
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
+ LD NIV+ E+ G+ +GK ++ + I DCG+
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQ 162
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 65/107 (60%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDFS NGTGGESIYG KF DENF H+ G+LSMAN+G+NTNGSQFFIT
Sbjct: 80 FMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPT 139
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSE 130
HLD + + K +E V KPA+ I +CGE E
Sbjct: 140 PHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 67/109 (61%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQFFIT
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
LD +N+V+++E+ G G + V I DCGE
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT +
Sbjct: 69 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 128
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 132
LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 67/103 (65%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F +QGGDF++G+GTGGESIYG KF DENF H+ P +LSMAN+G NTNGSQFFIT
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKI 122
LD + +VK IE+ G+ +GKP + V I
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCI 181
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 67/108 (62%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F QGGD +K +GTGG+SIYG KF DENF + H GPG+LSMAN G NTN SQF IT
Sbjct: 59 VIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVIT 118
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127
++ HLD ++ VKKIE G+ G + + I +CG+
Sbjct: 119 LKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQ 166
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT +
Sbjct: 69 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 128
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 132
LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 67/109 (61%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQF IT
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLIT 121
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
LD +N+V+++E+ G G + V I DCGE+
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEW 170
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLD---HNGPGILSMANSGANTNGSQF 76
+ P F +QGGDF++GNGTGGESIYG F DE+F H G G LSMAN+G NTNGSQF
Sbjct: 67 VIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQF 126
Query: 77 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSESK 132
FI LD L++VKK+E++G+ GK + + DCGE + K
Sbjct: 127 FICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 68/109 (62%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
+ P F LQGGDF+ GNGTGG+SIYGGKF DENFK H+ PG+LSMAN+G NTNGSQFFIT
Sbjct: 54 VIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFIT 113
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128
LD +IVKK+E +G+ G + + GE
Sbjct: 114 TVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF G+GTG SIY G F DENFKL H+ PG+LSMANSG +TNG QFFIT +
Sbjct: 72 FMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKC 131
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 127
LD L +++KIE V TG + KP PV I CGE
Sbjct: 132 DWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 54/110 (49%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT +
Sbjct: 62 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 121
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 132
LD + +V+K+E T KP + V I DCG+ K
Sbjct: 122 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F +QGGD++ NGTGG SIYG KF DENF+L H GILSMAN GA+TNGSQFFIT
Sbjct: 80 IIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFIT 139
Query: 80 FRRQHHLDXXXXXXXXXXXXLNIVKKIEQVG--TGDGKPAQPVKIIDCG 126
+ LD +++V KI + G +G K ++I DCG
Sbjct: 140 LGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/110 (49%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT +
Sbjct: 72 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 131
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 132
LD + +V+K+E T KP + V I DCG+ K
Sbjct: 132 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 181
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFIT 79
I P F +QGGDF++GNGTGG SIYG KF DENF H+ GILSMAN+G NTNGSQFFIT
Sbjct: 60 IIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 119
Query: 80 FRRQHHLDXXXXX--XXXXXXXLNIVKKIEQVGTGDGKP---AQPVKIIDCGEF 128
LD ++VK+IE +G+ G +P KI++CGE
Sbjct: 120 TAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRP-KIVNCGEL 172
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDFS+GNG GGESIYGG F DENF L H+ +LSMAN G +TNGSQFFIT +
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPA 143
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFS 129
HLD ++++IE + T +P V++IDCG +
Sbjct: 144 PHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF+KG+GTGGESIYGG F DE F + H+ P ++SMAN G NTNGSQFFIT
Sbjct: 71 FMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPA 130
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 128
HL+ +V KIE + T +P V I++CGE
Sbjct: 131 PHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFFIT +
Sbjct: 91 FMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPT 150
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 128
HLD +V++IE T KP V+I+ CGE
Sbjct: 151 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF++G+GTGG SIYG KF DENFKL H G G LSMAN+GA+TNGSQFFIT +
Sbjct: 63 FMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG-KPAQPVKIIDCGEFS 129
LD +++V+KIEQ G +P Q V I G +
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFFIT +
Sbjct: 74 FMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPT 133
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 128
HLD +V++IE T KP V+I+ CGE
Sbjct: 134 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFFIT +
Sbjct: 74 FMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPT 133
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 128
HLD +V++IE T KP V+I+ CGE
Sbjct: 134 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF NG+G SIYG KF DENF + H+ G+LSMANSG NTNG QFFIT ++
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 180
Query: 84 HHLDXXXXXX--XXXXXXLNIVKKIEQVGTG--DGKPAQPVKIIDCGEF 128
LD L ++KKIE V KP P+ +++CGE
Sbjct: 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF+ +GTGG+SIYG +F DEN K+ H G +SMAN+G N+NGSQFF+T
Sbjct: 62 FMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCG 126
LD +++VKK+E TG + KP + VKI DCG
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGD + G+GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQFFIT +
Sbjct: 72 FMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKP 131
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 127
LD + +V IE Q G +P II+ G+
Sbjct: 132 TWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGK 176
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 19 IIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 78
+IQ F +QGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQFFI
Sbjct: 64 VIQNFM-IQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFI 121
Query: 79 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 128
T LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 122 TTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 19 IIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 78
+IQ F +QGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQFFI
Sbjct: 64 VIQNFM-IQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFI 121
Query: 79 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 128
T LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQ 83
F +QGGDF+ +GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQFFIT +
Sbjct: 64 FMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKP 123
Query: 84 HHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 127
LD + +V IE Q G +P I++ G+
Sbjct: 124 TWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGK 168
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 78
+ P F +QGGD G G GG+SIYG F DE N +L H G GILSM+N+G NTN SQFFI
Sbjct: 83 VIPNFVIQGGD-PTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFI 141
Query: 79 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQV-GTGDGKPAQPVKII 123
T HLD + ++ I V T KP +KI+
Sbjct: 142 TLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRR 82
F +Q GD S G+GTGGESI+G +F DE F L+H+ P ++SMAN G NTNGSQFFIT
Sbjct: 54 FMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVP 112
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIID 124
LD IV IE+V T KP + +KI++
Sbjct: 113 CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRR 82
F +Q GD G G GGESI+GG+F DE + L H+ P LSMAN+G+NTNGSQFFIT
Sbjct: 70 FMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVP 128
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGTG--DGKPAQPVKIID 124
LD + +V++I V KP + V II+
Sbjct: 129 TPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGSQFFITFRR 82
F +Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGSQFFIT+ +
Sbjct: 55 FMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 113
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQV 109
Q HLD L + ++E++
Sbjct: 114 QPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGSQFFITFRR 82
F +Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGSQFFIT+ +
Sbjct: 49 FMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 107
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG--KPAQPVKIID 124
Q HLD L + ++E++ + +P V I D
Sbjct: 108 QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRR 82
F +QGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+T
Sbjct: 60 FMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP 118
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 123
LD + +V ++ V T +P VKII
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRR 82
F +QGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+T
Sbjct: 60 FMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP 118
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 123
LD + +V ++ V T +P VKII
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRR 82
F +QGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+T
Sbjct: 60 FMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAP 118
Query: 83 QHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 123
LD + +V ++ V T +P VKII
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 20 IQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 78
+ P F +QGGD G G+GGESIYG F DE + +L N G+++MAN+G++ NGSQFF
Sbjct: 69 VVPGFIVQGGD-PTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFF 127
Query: 79 TFRRQHHLDXXXXXXXXXX--XXLNIVKKIEQVGTGDGKPAQPVKIIDC 125
T R L+ N+++ E D +P P KI C
Sbjct: 128 TLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 24 FPLQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGA----NTNGSQFFI 78
F +QGGD G G GGESIYG F DE + +L ++ GILSMA+ GA NTNGSQFFI
Sbjct: 65 FIIQGGD-PTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFI 123
Query: 79 TFRRQHHLD 87
T+ L+
Sbjct: 124 TYSSLPQLN 132
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 40 ESIYGGKFTDENFK--LDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXXXXX 97
ES +G F DE F+ L H G GILSMANSG N+N SQFFITFR +LD
Sbjct: 83 ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 98 XXLNIVKKIEQVGTG--DGKPAQPVKI 122
+++ +E V + +P + ++I
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 44 GGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXXXXXXXLNI 102
G F DE + +L H G G+LSMAN G ++N S+FFITF+ HL+ L++
Sbjct: 86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDV 145
Query: 103 VKKIEQVGT 111
+++ E++ T
Sbjct: 146 LRQWEKLET 154
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 19 IIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 78
+IQ F +QGGD + G + +F E L + P +L+MAN+G TNGSQFFI
Sbjct: 83 VIQGFM-IQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFI 138
Query: 79 TFRRQHHLDX--XXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKI 122
T + HL+ +V+ I + T G+ +P PV I
Sbjct: 139 TVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
Length = 97
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 390 SPARRVSEPSASNHSRGLSRSPSPDGTP 417
SP R V + S S+HS G+SRS +P P
Sbjct: 6 SPVRSVRKNSLSDHSLGISRSKTPVDDP 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,925,538
Number of Sequences: 62578
Number of extensions: 371756
Number of successful extensions: 535
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 69
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)