Query 007440
Match_columns 603
No_of_seqs 227 out of 1272
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 5.5E-39 1.2E-43 333.6 10.2 129 2-131 38-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.3E-36 2.8E-41 293.7 11.4 129 3-132 70-206 (217)
3 KOG0881 Cyclophilin type pepti 100.0 1E-34 2.2E-39 263.3 7.1 122 4-127 36-162 (164)
4 KOG0879 U-snRNP-associated cyc 100.0 1.4E-33 3.1E-38 258.5 7.4 126 2-128 40-177 (177)
5 KOG0883 Cyclophilin type, U bo 100.0 6.2E-33 1.3E-37 288.6 10.1 130 3-134 303-437 (518)
6 COG0652 PpiB Peptidyl-prolyl c 100.0 8.2E-32 1.8E-36 256.1 13.6 123 2-128 24-157 (158)
7 cd01923 cyclophilin_RING cyclo 100.0 2.2E-31 4.7E-36 253.5 15.3 129 2-132 24-157 (159)
8 PLN03149 peptidyl-prolyl isome 100.0 3E-31 6.5E-36 258.9 14.2 126 2-128 48-186 (186)
9 KOG0111 Cyclophilin-type pepti 100.0 4.9E-32 1.1E-36 265.5 8.6 126 2-128 166-297 (298)
10 PTZ00060 cyclophilin; Provisio 100.0 3.9E-31 8.4E-36 257.4 14.9 126 2-128 45-182 (183)
11 cd01926 cyclophilin_ABH_like c 100.0 4.1E-31 8.9E-36 252.5 14.2 124 2-126 30-164 (164)
12 cd01927 cyclophilin_WD40 cyclo 100.0 5.8E-31 1.3E-35 247.9 14.3 121 2-124 22-147 (148)
13 cd01928 Cyclophilin_PPIL3_like 100.0 9.5E-31 2.1E-35 247.8 14.4 124 2-127 25-153 (153)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 9.4E-31 2E-35 246.0 14.2 120 2-123 22-145 (146)
15 cd01921 cyclophilin_RRM cyclop 100.0 1.2E-30 2.6E-35 249.9 15.2 129 2-132 22-163 (166)
16 PTZ00221 cyclophilin; Provisio 100.0 1.6E-30 3.5E-35 263.3 15.1 129 2-134 82-225 (249)
17 KOG0882 Cyclophilin-related pe 100.0 4.2E-31 9.1E-36 279.5 9.4 123 3-127 430-557 (558)
18 cd01925 cyclophilin_CeCYP16-li 100.0 6.2E-29 1.3E-33 239.4 14.8 129 2-132 30-164 (171)
19 KOG0884 Similar to cyclophilin 100.0 2.1E-29 4.5E-34 227.8 8.8 127 3-131 26-158 (161)
20 PRK10791 peptidyl-prolyl cis-t 100.0 7.1E-28 1.5E-32 230.8 14.6 123 2-128 24-163 (164)
21 PRK10903 peptidyl-prolyl cis-t 100.0 7.9E-28 1.7E-32 235.6 14.6 123 2-128 53-189 (190)
22 KOG0885 Peptidyl-prolyl cis-tr 99.9 2.9E-28 6.2E-33 253.3 9.9 127 4-132 39-171 (439)
23 cd01920 cyclophilin_EcCYP_like 99.9 3.1E-27 6.6E-32 224.2 13.7 119 2-124 22-154 (155)
24 KOG0415 Predicted peptidyl pro 99.9 5.3E-27 1.2E-31 242.3 10.4 128 3-132 26-166 (479)
25 cd00317 cyclophilin cyclophili 99.9 1.2E-25 2.6E-30 209.2 14.0 119 2-123 22-145 (146)
26 cd01924 cyclophilin_TLP40_like 99.9 6.6E-26 1.4E-30 219.6 11.9 106 2-108 22-164 (176)
27 KOG0865 Cyclophilin type pepti 99.9 3.6E-26 7.9E-31 219.2 7.0 112 16-128 53-167 (167)
28 PF00160 Pro_isomerase: Cyclop 99.9 4.9E-25 1.1E-29 206.7 13.2 124 2-127 25-155 (155)
29 KOG0882 Cyclophilin-related pe 96.9 0.00072 1.6E-08 74.0 4.1 126 5-132 130-266 (558)
30 KOG2985 Uncharacterized conser 95.1 0.021 4.5E-07 58.8 3.8 9 253-261 283-291 (306)
31 KOG0546 HSP90 co-chaperone CPR 94.0 0.012 2.5E-07 63.4 -0.9 114 2-127 57-183 (372)
32 KOG3116 Predicted C3H1-type Zn 93.0 0.27 5.9E-06 47.2 6.5 12 92-103 23-34 (177)
33 PRK00969 hypothetical protein; 88.9 0.94 2E-05 51.1 6.8 84 3-104 219-302 (508)
34 TIGR03268 methan_mark_3 putati 88.1 1.1 2.3E-05 50.6 6.6 85 3-105 216-300 (503)
35 KOG2812 Uncharacterized conser 78.1 1.2 2.5E-05 48.3 1.7 7 190-196 227-233 (426)
36 KOG2985 Uncharacterized conser 67.4 3.4 7.5E-05 43.0 2.1 9 207-215 235-243 (306)
37 KOG4368 Predicted RNA binding 52.3 39 0.00085 39.2 7.1 17 308-324 347-363 (757)
38 COG4070 Predicted peptidyl-pro 51.3 20 0.00042 39.9 4.4 60 42-106 244-303 (512)
39 TIGR03268 methan_mark_3 putati 48.4 44 0.00095 38.2 6.7 81 16-108 409-495 (503)
40 KOG2236 Uncharacterized conser 45.8 11 0.00025 42.3 1.7 11 90-100 251-261 (483)
41 PF04126 Cyclophil_like: Cyclo 40.6 23 0.00049 32.8 2.6 47 57-108 60-113 (120)
42 KOG2548 SWAP mRNA splicing reg 35.5 29 0.00062 39.8 2.8 8 405-412 389-396 (653)
43 KOG3064 RNA-binding nuclear pr 29.9 24 0.00053 37.1 1.1 6 90-95 134-139 (303)
44 PRK00969 hypothetical protein; 28.1 88 0.0019 35.9 5.0 52 57-108 114-167 (508)
45 KOG3794 CBF1-interacting corep 26.6 19 0.00041 39.8 -0.4 6 409-414 412-417 (453)
46 KOG0879 U-snRNP-associated cyc 26.4 26 0.00056 33.7 0.5 31 4-35 58-88 (177)
47 KOG3869 Uncharacterized conser 25.6 14 0.0003 41.1 -1.6 6 44-49 88-93 (450)
48 COG5129 MAK16 Nuclear protein 23.8 50 0.0011 34.2 2.0 9 11-19 11-19 (303)
49 KOG0880 Peptidyl-prolyl cis-tr 23.2 47 0.001 33.8 1.6 44 6-50 85-128 (217)
50 KOG0111 Cyclophilin-type pepti 22.3 23 0.00051 36.5 -0.7 45 3-48 178-222 (298)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=333.57 Aligned_cols=129 Identities=55% Similarity=0.875 Sum_probs=121.7
Q ss_pred hhhHHHhhhcC-----------ceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEeccc
Q 007440 2 SSFFFFSFTVH-----------LFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANS 67 (603)
Q Consensus 2 ~slF~kL~~~g-----------~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~ 67 (603)
+.||+.||+.- .|. |||||++ |||||||++.|+|+||++|||..|.||+|.++|+.++||+|||.
T Consensus 38 aENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~-FMiQgGDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~ 116 (372)
T KOG0546|consen 38 AENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKN-FMIQGGDFSEGNGTGGESIYGEKFDDENFELKHDRPFLLSMANR 116 (372)
T ss_pred HHHHHHHhccccCCCCCCCCeeeecCchhheeeec-ceeeccccccCCCCCcccccccccccccceeccCcchhhhhhcC
Confidence 56899999754 233 9999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCC-CCCCCCeEEeeeeecccc
Q 007440 68 GANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSES 131 (603)
Q Consensus 68 g~ns~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~-grP~~~I~I~~cGvl~d~ 131 (603)
|+||||||||||+.++|||||+|||||+||.|++||..||++.|+. .+|+.+|+|.+||+|...
T Consensus 117 GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 117 GPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred CCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence 9999999999999999999999999999999999999999999984 589999999999999775
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=293.65 Aligned_cols=129 Identities=53% Similarity=0.862 Sum_probs=121.7
Q ss_pred hhHHHhhhc----CceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCCCCCce
Q 007440 3 SFFFFSFTV----HLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 75 (603)
Q Consensus 3 slF~kL~~~----g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQ 75 (603)
.+|++||.. +-|. |||||++ |||||||++.|+|+||-+|||..|+|||+.|+|+.+|.|+|||.|+|+||||
T Consensus 70 ~NF~~l~~~~~~~~gY~gS~FhRVi~n-fmIQGGd~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQ 148 (217)
T KOG0880|consen 70 ENFRALATSGEKGYGYKGSKFHRVIPN-FMIQGGDFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQ 148 (217)
T ss_pred HHHHHHHccCCCCcccCCceeeeeecC-ceeecCccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCce
Confidence 589999982 2333 9999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 76 FFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 76 FFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
||||+...+||||+|||||+|++||+||.+||.+.|+ +++|+++|+|.+||+|....
T Consensus 149 FfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 149 FFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVEY 206 (217)
T ss_pred EEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccccc
Confidence 9999999999999999999999999999999999998 78999999999999997753
No 3
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=263.33 Aligned_cols=122 Identities=48% Similarity=0.776 Sum_probs=117.1
Q ss_pred hHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEE
Q 007440 4 FFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFIT 79 (603)
Q Consensus 4 lF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE-~~~l~H~~~GlLsMA~~g~ns~GSQFFIt 79 (603)
+|+.|+..+||+ |||||++ |||||||+ +|+|.||.+|||..|+|| +..|+|..+|+|+|||.|+|+||||||||
T Consensus 36 NF~eLarrgYYn~v~FHRii~D-FmiQGGDP-TGTGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiT 113 (164)
T KOG0881|consen 36 NFAELARRGYYNGVIFHRIIKD-FMIQGGDP-TGTGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFIT 113 (164)
T ss_pred HHHHHHhcccccceeeeehhhh-heeecCCC-CCCCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEE
Confidence 799999999999 9999999 99999999 699999999999999999 77899999999999999999999999999
Q ss_pred ccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeee
Q 007440 80 FRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 127 (603)
Q Consensus 80 L~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGv 127 (603)
|.+.+||||+||+||+|+.||+||..|..+.|+ +++|+.+|+|+.+..
T Consensus 114 LAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 114 LAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred ecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 999999999999999999999999999999988 689999999987754
No 4
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=258.52 Aligned_cols=126 Identities=55% Similarity=0.905 Sum_probs=119.0
Q ss_pred hhhHHHhhhcCceE-----------EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCC
Q 007440 2 SSFFFFSFTVHLFD-----------HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGAN 70 (603)
Q Consensus 2 ~slF~kL~~~g~Yd-----------FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~n 70 (603)
+.+|-++|+..|-. |||||++ |||||||+..|+|+|-.+|||.+|+||+|.++|..+|+|+|||.|++
T Consensus 40 AENFRQFCTGE~r~~g~PiGYK~~tFHRvIkd-FMiQgGDFv~gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~ 118 (177)
T KOG0879|consen 40 AENFRQFCTGEYRKDGVPIGYKNSTFHRVIKD-FMIQGGDFVNGDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKD 118 (177)
T ss_pred HHHHHhhcccccccCCccccccccchHHHhhh-heeccCceecCCCceEEEEcCCCCCCcceeeecCCCceeeccccCCC
Confidence 56788888765432 9999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeec
Q 007440 71 TNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEF 128 (603)
Q Consensus 71 s~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl 128 (603)
+||+|||||...+.||||+|||||+||+|+.|+.+||.+++. +.+|.-+|.|+.||++
T Consensus 119 tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 119 TNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred CCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 999999999999999999999999999999999999999998 8899999999999974
No 5
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.2e-33 Score=288.60 Aligned_cols=130 Identities=45% Similarity=0.732 Sum_probs=124.7
Q ss_pred hhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEE
Q 007440 3 SFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 78 (603)
Q Consensus 3 slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE-~~~l~H~~~GlLsMA~~g~ns~GSQFFI 78 (603)
.+||.||..|||+ |||.|.+ |||||||+ .|+|.||++|||.+|.|| ...|.|..+|+|+|||.|+|+|||||||
T Consensus 303 eNFI~lc~~gYYnnt~FHRsIrn-FmiQGGDP-TGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFI 380 (518)
T KOG0883|consen 303 ENFITLCKNGYYNNTIFHRSIRN-FMIQGGDP-TGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFI 380 (518)
T ss_pred HHHHHHHhcccccchHHHHHHHH-HeeeCCCC-CCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEE
Confidence 4899999999999 9999999 99999999 699999999999999999 5789999999999999999999999999
Q ss_pred EccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccccc
Q 007440 79 TFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESKIQ 134 (603)
Q Consensus 79 tL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k~~ 134 (603)
++..+.|||++|||||+||-|++||.+||+|+++ .++|+.+|+|..+.|++++.+.
T Consensus 381 tyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfeE 437 (518)
T KOG0883|consen 381 TYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFEE 437 (518)
T ss_pred EecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHHH
Confidence 9999999999999999999999999999999998 6899999999999999998644
No 6
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-32 Score=256.12 Aligned_cols=123 Identities=46% Similarity=0.729 Sum_probs=110.6
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCC--CceEEecccC-CCCCCce
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNG--PGILSMANSG-ANTNGSQ 75 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~--~GlLsMA~~g-~ns~GSQ 75 (603)
..+|++||+.+||+ |||||+| |||||||++.++|.+|+ +.+|++|++...|+. +|+|+||+.+ +|+++||
T Consensus 24 v~NF~~l~~~g~Ydg~~FHRVi~~-FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQ 99 (158)
T COG0652 24 VANFLQLVKEGFYDGTIFHRVIPG-FMIQGGDPTGGDGTGGP---GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQ 99 (158)
T ss_pred HHHHHHHHHcCCCCCceEEEeecC-ceeecCCCCCCCCCCCC---CCCCcccccccccccCCcceEeEcccCCcCCccCe
Confidence 36899999999999 9999999 99999999888899988 488999999988887 9999999998 9999999
Q ss_pred EEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCC-----CCCCCCeEEeeeeec
Q 007440 76 FFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGEF 128 (603)
Q Consensus 76 FFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~-----grP~~~I~I~~cGvl 128 (603)
||||+.+++|||++|||||+||+|||||++|+++.+.. ..|..+|+|..+.++
T Consensus 100 FFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 100 FFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred EEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 99999999999999999999999999999999977653 345567777766553
No 7
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.97 E-value=2.2e-31 Score=253.54 Aligned_cols=129 Identities=47% Similarity=0.752 Sum_probs=120.8
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCC-CCCCCCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~-~~l~H~~~GlLsMA~~g~ns~GSQFF 77 (603)
..+|++||+.+||+ ||||+++ |||||||+ .++|.++.++||..|++|. ..+.|+.+|+|+||+.+++++++|||
T Consensus 24 ~~nF~~L~~~g~Y~~~~f~rv~~~-~~iq~Gd~-~~~g~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFf 101 (159)
T cd01923 24 CENFIKLCKKGYYDGTIFHRSIRN-FMIQGGDP-TGTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFF 101 (159)
T ss_pred HHHHHHHHhcCccCCcEEEEEeCC-cEEEeccc-CCCCCCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEE
Confidence 46899999999999 9999999 99999998 5788999999999999994 56889999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 78 ITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
|||.++++||++|||||+|++|||||++|+.++++ +++|+.+|+|.+|+|+.++.
T Consensus 102 It~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf 157 (159)
T cd01923 102 ITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPF 157 (159)
T ss_pred EECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCC
Confidence 99999999999999999999999999999999875 78999999999999999873
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.97 E-value=3e-31 Score=258.86 Aligned_cols=126 Identities=53% Similarity=0.876 Sum_probs=118.1
Q ss_pred hhhHHHhhhcCc--------eE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCC
Q 007440 2 SSFFFFSFTVHL--------FD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGAN 70 (603)
Q Consensus 2 ~slF~kL~~~g~--------Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~n 70 (603)
+.+|++||+..+ |+ ||+||++ |||||||+..++|+|+.++||..|++|++.+.|+.+|+|+||+.+++
T Consensus 48 ~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~-f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~ 126 (186)
T PLN03149 48 AENFRQFCTGEFRKAGLPQGYKGCQFHRVIKD-FMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPN 126 (186)
T ss_pred HHHHHHHHhhhccccCcccccCCcEEEEEcCC-cEEEcCCcccCCCCCcccccCCccCCcccccccCCCCEEEEeeCCCC
Confidence 468999997544 76 9999999 99999999888999999999999999988999999999999999999
Q ss_pred CCCceEEEEccCCCCCCCCCcEEEEEE-eCHHHHHHHHhcCCC-CCCCCCCeEEeeeeec
Q 007440 71 TNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEF 128 (603)
Q Consensus 71 s~GSQFFItL~~~p~LDGk~vVFGrVV-eGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl 128 (603)
++++||||||.++++||++|||||+|| +|||||++|+.++++ +++|+.+|+|.+||++
T Consensus 127 s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 127 TNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred CcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 999999999999999999999999999 799999999999995 7899999999999985
No 9
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-32 Score=265.46 Aligned_cols=126 Identities=59% Similarity=0.954 Sum_probs=119.1
Q ss_pred hhhHHHhhhcCc---eE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCCCCCce
Q 007440 2 SSFFFFSFTVHL---FD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQ 75 (603)
Q Consensus 2 ~slF~kL~~~g~---Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQ 75 (603)
+.+|-.||.... |. ||||||. ||+||||+++++|+||.+|||..|.||+|.|+|..+|+|+|||.|+|+||||
T Consensus 166 aenfr~Lctge~gfgykgssfhriip~-fmcqggdftn~ngtggksiygkkfddenf~lkht~pgtlsmansgantngsq 244 (298)
T KOG0111|consen 166 AENFRCLCTGEAGFGYKGSSFHRIIPK-FMCQGGDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQ 244 (298)
T ss_pred hhhhhhhccccCccCccccchhhhhhh-hhccCCccccCCCCCCcccccccccccceeeecCCCceeeccccCCCCCCce
Confidence 467888886432 22 9999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCCCCCeEEeeeeec
Q 007440 76 FFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128 (603)
Q Consensus 76 FFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~grP~~~I~I~~cGvl 128 (603)
||||+....||||+|||||.||+||+||.+|+++++..++|.+.|+|.+||+|
T Consensus 245 ffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 245 FFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEI 297 (298)
T ss_pred EEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999987
No 10
>PTZ00060 cyclophilin; Provisional
Probab=99.97 E-value=3.9e-31 Score=257.35 Aligned_cols=126 Identities=56% Similarity=0.893 Sum_probs=119.3
Q ss_pred hhhHHHhhh---------cCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCC
Q 007440 2 SSFFFFSFT---------VHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGA 69 (603)
Q Consensus 2 ~slF~kL~~---------~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ 69 (603)
+.+|++||. .++|+ ||||+++ |+|||||+..++|.++.++||..|++|...+.|+.+|+|+||+.++
T Consensus 45 ~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~-~~iqgGd~~~~~g~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~ 123 (183)
T PTZ00060 45 AENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQ-FMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGP 123 (183)
T ss_pred HHHHHHHhcCCcccccCcccccCCeEEEEEcCC-CeEEeCCccCCCCCCCCcccccccCCccccccCCCCCEEEeccCCC
Confidence 468999996 56888 9999999 9999999987889999999999999998899999999999999999
Q ss_pred CCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCCCCCeEEeeeeec
Q 007440 70 NTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128 (603)
Q Consensus 70 ns~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~grP~~~I~I~~cGvl 128 (603)
+++++||||||.++++|||+|||||+||+|||||++|+++++.++.|+.+|+|.+||+|
T Consensus 124 ~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 124 NTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182 (183)
T ss_pred CCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEc
Confidence 99999999999999999999999999999999999999999988899999999999997
No 11
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=4.1e-31 Score=252.55 Aligned_cols=124 Identities=61% Similarity=1.010 Sum_probs=117.0
Q ss_pred hhhHHHhhhc--C------ceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCC
Q 007440 2 SSFFFFSFTV--H------LFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGAN 70 (603)
Q Consensus 2 ~slF~kL~~~--g------~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~n 70 (603)
..+|++||.. + +|+ ||||+++ |||||||+..++|.++.++||..|++|.+.+.|+.+|+|+||+.+++
T Consensus 30 ~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~-~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~ 108 (164)
T cd01926 30 AENFRALCTGEKGKGGKPFGYKGSTFHRVIPD-FMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPN 108 (164)
T ss_pred HHHHHHHhcccCCCcccccccCCCEEEEEeCC-cEEEcCCccCCCCCCCCcccCCccCCCCccccCCCccEEEeeECCCC
Confidence 4689999973 4 788 9999999 99999999888899999999999999988999999999999999999
Q ss_pred CCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCCCCCeEEeeee
Q 007440 71 TNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCG 126 (603)
Q Consensus 71 s~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~grP~~~I~I~~cG 126 (603)
++++||||||.++++||++|||||+||+|||||++|+.+++++++|+.+|+|.+||
T Consensus 109 ~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 109 TNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred CcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 99999999999999999999999999999999999999999888999999999997
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.97 E-value=5.8e-31 Score=247.89 Aligned_cols=121 Identities=47% Similarity=0.734 Sum_probs=113.6
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCC-CCCCCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~-~l~H~~~GlLsMA~~g~ns~GSQFF 77 (603)
+.+|++||+.+||+ ||||++| |||||||+ .++|.++.++|+..|++|.. .+.|+.+|+|+||+.++++++||||
T Consensus 22 ~~nF~~L~~~g~Y~~~~f~Rvi~~-f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFf 99 (148)
T cd01927 22 VENFTTHARNGYYNNTIFHRVIKG-FMIQTGDP-TGDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFF 99 (148)
T ss_pred HHHHHHHhhcCCcCCcEEEEEcCC-cEEEeccc-CCCCCCCCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEE
Confidence 46899999999999 9999999 99999998 57889999999999999965 7889999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEee
Q 007440 78 ITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIID 124 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~ 124 (603)
|||.++++||++|||||+|++|||||++|+.++++ +++|+.+|+|..
T Consensus 100 It~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 100 ITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred EEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 99999999999999999999999999999999985 789999999975
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.97 E-value=9.5e-31 Score=247.78 Aligned_cols=124 Identities=42% Similarity=0.691 Sum_probs=115.5
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCC-CCCCCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~-~l~H~~~GlLsMA~~g~ns~GSQFF 77 (603)
+.+|++||+.+||+ ||||+++ |||||||+ .++|.++.++||..|++|.. .+.|+.+|+|+||+.++++++||||
T Consensus 25 ~~nF~~L~~~g~Y~~~~f~rv~~~-f~iq~Gd~-~~~g~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFf 102 (153)
T cd01928 25 CENFLALCASGYYNGCIFHRNIKG-FMVQTGDP-TGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFF 102 (153)
T ss_pred HHHHHHHHhcCccCCcEEEEeCCC-CEEEcccc-CCCCCCCCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEE
Confidence 46899999999999 9999999 99999998 57888899999999999965 6789899999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeee
Q 007440 78 ITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 127 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGv 127 (603)
|+|+++++||++|||||+|++|||||++|+.++++ +++|+.+|+|.+|.+
T Consensus 103 I~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 103 ITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred EEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 99999999999999999999999999999999885 789999999999853
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.97 E-value=9.4e-31 Score=246.04 Aligned_cols=120 Identities=47% Similarity=0.797 Sum_probs=112.9
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE-~~~l~H~~~GlLsMA~~g~ns~GSQFF 77 (603)
+.+|++||+.+||+ ||||+++ |||||||+ .++|.++.++||..|++| +..+.|+.+|+|+||+.+++++++|||
T Consensus 22 ~~nF~~L~~~g~Y~~~~f~Rvi~~-f~iq~Gd~-~~~g~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFf 99 (146)
T cd01922 22 CKNFYELAKRGYYNGTIFHRLIKD-FMIQGGDP-TGTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFF 99 (146)
T ss_pred HHHHHHHHhcCCcCCcEEEEEcCC-cEEEeccc-CCCCCCcccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEE
Confidence 46899999999999 9999999 99999998 477888899999999999 457889999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCCCCCeEEe
Q 007440 78 ITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKII 123 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~grP~~~I~I~ 123 (603)
|||.++|+||++|||||+|++|||||++|+.+++++++|+.+|+|.
T Consensus 100 It~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 100 ITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred EEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 9999999999999999999999999999999998888999999996
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.97 E-value=1.2e-30 Score=249.86 Aligned_cols=129 Identities=36% Similarity=0.597 Sum_probs=116.5
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCC-------CCCCCCC-CCCCCCCCceEEecccCCC
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYG-------GKFTDEN-FKLDHNGPGILSMANSGAN 70 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG-------~~f~dE~-~~l~H~~~GlLsMA~~g~n 70 (603)
+.+|++||+.+||+ |||||++ |||||||+. +++.++.++|+ ..|.+|. ..+.|+.+|+|+||+.+++
T Consensus 22 ~~nF~~L~~~~~Y~g~~fhrvi~~-f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~ 99 (166)
T cd01921 22 CLNFLKLCKLKYYNFCLFYNVQKD-FIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDN 99 (166)
T ss_pred HHHHHHHHhcCCcCCCEEEEEeCC-ceEEECCcC-CCCCCCcccccccccccCcccCcccCCccccCCceEEEEeECCCC
Confidence 46899999999999 9999999 999999984 77888887775 2466775 4788999999999999999
Q ss_pred CCCceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 71 TNGSQFFITFRR-QHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 71 s~GSQFFItL~~-~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
+++|||||||.+ +++|||+|||||+||+|||||++|+.+++. ++.|+.+|+|..|+||.++.
T Consensus 100 ~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf 163 (166)
T cd01921 100 LNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPF 163 (166)
T ss_pred CccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCC
Confidence 999999999975 899999999999999999999999999886 78999999999999999874
No 16
>PTZ00221 cyclophilin; Provisional
Probab=99.97 E-value=1.6e-30 Score=263.34 Aligned_cols=129 Identities=29% Similarity=0.376 Sum_probs=114.9
Q ss_pred hhhHHHhhhcC-----------ceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEeccc
Q 007440 2 SSFFFFSFTVH-----------LFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANS 67 (603)
Q Consensus 2 ~slF~kL~~~g-----------~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~ 67 (603)
+.||++||+.. +|+ ||+|++++||||+||++. ++.++||..|.+|++.+.|+.+|+|+||+.
T Consensus 82 ~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~ 157 (249)
T PTZ00221 82 VENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGTPIADEGYRHRHTERGLLTMISE 157 (249)
T ss_pred HHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCCcccCccccccCCCCCEEEeCcC
Confidence 46899999732 155 999998548999999853 245688999999999999999999999999
Q ss_pred CCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccccc
Q 007440 68 GANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESKIQ 134 (603)
Q Consensus 68 g~ns~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k~~ 134 (603)
++|++||||||||.++++|||+|||||+||+|||||++|+.++++ +++|+.+|+|.+||+|.+++..
T Consensus 158 GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 158 GPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCC
Confidence 999999999999999999999999999999999999999999875 7899999999999999987533
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-31 Score=279.50 Aligned_cols=123 Identities=48% Similarity=0.707 Sum_probs=118.1
Q ss_pred hhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEE
Q 007440 3 SFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 78 (603)
Q Consensus 3 slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE-~~~l~H~~~GlLsMA~~g~ns~GSQFFI 78 (603)
.+|--.|..|||+ |||||+| ||||+||+ .|+|+||++|||..|+|| +..|.|+.+.+|+|||+|+|+|||||||
T Consensus 430 enf~th~rngyy~~~~fhriik~-fmiqtgdp-~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffi 507 (558)
T KOG0882|consen 430 ENFTTHSRNGYYDNHTFHRIIKG-FMIQTGDP-LGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFI 507 (558)
T ss_pred hhhhccccCccccCcchHHhhhh-heeecCCC-CCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEE
Confidence 4788889999999 9999999 99999999 699999999999999999 6789999999999999999999999999
Q ss_pred EccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeee
Q 007440 79 TFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 127 (603)
Q Consensus 79 tL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGv 127 (603)
|+.+.|||||+|||||+|+.|||||+.|+++.|+ .++|.++|.|+++.+
T Consensus 508 t~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 508 TTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred EecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 9999999999999999999999999999999998 789999999999865
No 18
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.96 E-value=6.2e-29 Score=239.38 Aligned_cols=129 Identities=38% Similarity=0.630 Sum_probs=118.6
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCC-CCCCCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~-~l~H~~~GlLsMA~~g~ns~GSQFF 77 (603)
..+|++||..+||+ ||||+++ |||||||+ .++|.++.++||..|.+|.. .+.|+.+|+|+||+.+++++++|||
T Consensus 30 ~~nF~~L~~~~~Y~~~~f~Rvi~~-f~iQgGd~-~~~g~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFf 107 (171)
T cd01925 30 CRNFIQLCLEGYYDNTIFHRVVPG-FIIQGGDP-TGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFF 107 (171)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCC-cEEEcccc-CCCCccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEE
Confidence 35899999999999 9999999 99999998 47889999999999999954 5789999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEE-eCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 78 ITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVV-eGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
|||+++++|||+|||||+|+ ++|++|++|+.+.++ +++|+.+|+|..|+++.++.
T Consensus 108 It~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf 164 (171)
T cd01925 108 FTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPF 164 (171)
T ss_pred EEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCc
Confidence 99999999999999999999 467889999998886 68999999999999998863
No 19
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=227.76 Aligned_cols=127 Identities=41% Similarity=0.617 Sum_probs=120.0
Q ss_pred hhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCC-CCCCCCCCceEEecccCCCCCCceEEE
Q 007440 3 SFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFI 78 (603)
Q Consensus 3 slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~-~~l~H~~~GlLsMA~~g~ns~GSQFFI 78 (603)
.+|+.||...||+ ||+-|+| ||||+||+ .-+|.||.+|||.+|+||. .-|+|+.+|+|+|||+|+|+|++||||
T Consensus 26 e~~l~~~~~~~~n~~~~~~~~~~-f~v~~~~~-~~tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffi 103 (161)
T KOG0884|consen 26 ENFLALCASDYYNGCIFHRNIKG-FMVQTGDP-THTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFI 103 (161)
T ss_pred HHHHHHhhhhhccceeecCCCCC-cEEEeCCC-CCCCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEE
Confidence 5799999999999 9999999 99999998 5889999999999999995 469999999999999999999999999
Q ss_pred EccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC--CCCCCCCeEEeeeeecccc
Q 007440 79 TFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG--DGKPAQPVKIIDCGEFSES 131 (603)
Q Consensus 79 tL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~--~grP~~~I~I~~cGvl~d~ 131 (603)
|.+..+|||=+|||||+||+|+|+|+.||.+++. +.+|+.++.|.++.|-.++
T Consensus 104 ty~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp 158 (161)
T KOG0884|consen 104 TYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP 158 (161)
T ss_pred EecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCc
Confidence 9999999999999999999999999999999987 4799999999999987765
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.95 E-value=7.1e-28 Score=230.84 Aligned_cols=123 Identities=28% Similarity=0.392 Sum_probs=104.8
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccC-CCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g-~ns~GSQFF 77 (603)
..+|++||+.+||+ |||||++ |||||||+..+.+.. .++..|.+|.....|+.+|+|+||+.+ +++++||||
T Consensus 24 ~~nF~~L~~~g~Yd~~~fhRvi~~-f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFf 99 (164)
T PRK10791 24 VKNFLDYCREGFYNNTIFHRVING-FMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFF 99 (164)
T ss_pred HHHHHHHHhcCCcCCcEEEEEecC-cEEEeCCcCCCCCcC---CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEE
Confidence 46899999999999 9999999 999999986554332 245678888555556679999999875 899999999
Q ss_pred EEccCCCCCC-------C-CCcEEEEEEeCHHHHHHHHhcCCCC-----CCCCCCeEEeeeeec
Q 007440 78 ITFRRQHHLD-------G-KHVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGEF 128 (603)
Q Consensus 78 ItL~~~p~LD-------G-k~vVFGrVVeGmEVL~kIe~v~t~~-----grP~~~I~I~~cGvl 128 (603)
|+|.++++|| + +|||||+|++|||||++|+++.++. +.|+.+|+|..|.|.
T Consensus 100 I~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 100 INVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred EEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEEe
Confidence 9999998876 3 7999999999999999999998863 689999999999764
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.95 E-value=7.9e-28 Score=235.59 Aligned_cols=123 Identities=30% Similarity=0.438 Sum_probs=107.1
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccC-CCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g-~ns~GSQFF 77 (603)
..+|++||+.+||+ |||||++ |||||||+..+.+ ...++.+|.+|.....|+..|+|+||+.+ +|+++||||
T Consensus 53 ~~NF~~L~~~g~Ydg~~FhRvi~~-f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFf 128 (190)
T PRK10903 53 VKNFVDYVNSGFYNNTTFHRVIPG-FMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFF 128 (190)
T ss_pred HHHHHHHHhcCCcCCcEEEEEeCC-ceEEeCCcCCCCC---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEE
Confidence 36899999999999 9999999 9999999854332 12346678888766778889999999864 899999999
Q ss_pred EEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhcCCCC-----CCCCCCeEEeeeeec
Q 007440 78 ITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIIDCGEF 128 (603)
Q Consensus 78 ItL~~~p~LDG-----k~vVFGrVVeGmEVL~kIe~v~t~~-----grP~~~I~I~~cGvl 128 (603)
|||.++++||+ +|||||+|++|||||++|+.+++++ +.|+.+|+|..|+|+
T Consensus 129 It~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 129 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred EECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence 99999999984 8999999999999999999998863 689999999999886
No 22
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-28 Score=253.26 Aligned_cols=127 Identities=38% Similarity=0.620 Sum_probs=118.0
Q ss_pred hHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEE
Q 007440 4 FFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFIT 79 (603)
Q Consensus 4 lF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE-~~~l~H~~~GlLsMA~~g~ns~GSQFFIt 79 (603)
+||+||..|||+ ||+|||| |+|||||+ +|+|+||++|||.+|.+| +..|.++..|+|+||+.+.+.||+|||||
T Consensus 39 nFiqKOGegyy~nt~fhrlvp~-f~~Qggdp-~~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfft 116 (439)
T KOG0885|consen 39 NFIQLCLEGYYDNTEFHRLVPG-FLVQGGDP-TGTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFT 116 (439)
T ss_pred HHHHHHHhccccCceeeeeccc-hhcccCCC-CCCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEE
Confidence 799999999999 9999999 99999999 799999999999999999 67899999999999999999999999999
Q ss_pred ccCCCCCCCCCcEEEEEE-eCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 80 FRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 80 L~~~p~LDGk~vVFGrVV-eGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
|+++++|+++|||||+|+ +-+-.|-.|..+.++ +.+|+.+-+|..|.||.++.
T Consensus 117 l~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npF 171 (439)
T KOG0885|consen 117 LGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPF 171 (439)
T ss_pred ecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCch
Confidence 999999999999999998 456666678888877 78999999999999998763
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.95 E-value=3.1e-27 Score=224.21 Aligned_cols=119 Identities=29% Similarity=0.382 Sum_probs=102.2
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccC-CCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g-~ns~GSQFF 77 (603)
+.+|++||..+||+ |||||++ |||||||+..+.+. ..++..|.+|.....|+.+|+|+||+.+ +++++||||
T Consensus 22 ~~nF~~L~~~g~Yd~~~fhRvi~~-f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFf 97 (155)
T cd01920 22 VENFLAYVRKGFYDNTIFHRVISG-FVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFF 97 (155)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCC-cEEEeCCCCCCCCc---cccCCcccCcccccccCCceEEEECCCCCCCCccceEE
Confidence 46899999999999 9999999 99999998644332 2345678888777778889999999864 899999999
Q ss_pred EEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhcCCCC-----CCCCCCeEEee
Q 007440 78 ITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVGTGD-----GKPAQPVKIID 124 (603)
Q Consensus 78 ItL~~~p~LDG-----k~vVFGrVVeGmEVL~kIe~v~t~~-----grP~~~I~I~~ 124 (603)
|+|.++++||+ +|||||+|++|||||++|+.+++++ +.|+.+|+|..
T Consensus 98 I~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 98 INLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred EECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 99999999995 7999999999999999999999864 47888888764
No 24
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-27 Score=242.25 Aligned_cols=128 Identities=36% Similarity=0.570 Sum_probs=116.2
Q ss_pred hhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCC-------CCCCC-CCCCCCCCCceEEecccCCCC
Q 007440 3 SFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGG-------KFTDE-NFKLDHNGPGILSMANSGANT 71 (603)
Q Consensus 3 slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~-------~f~dE-~~~l~H~~~GlLsMA~~g~ns 71 (603)
-||||||+..||+ ||.|..+ |++|.||+ .|+|.||.+|||. .|+.| .+.+.|..+|+|+|+++|.|.
T Consensus 26 lNFLKLCk~KYYN~clfh~vq~~-f~aQTGDP-tGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~ 103 (479)
T KOG0415|consen 26 LNFLKLCKIKYYNFCLFHTVQRD-FTAQTGDP-TGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENL 103 (479)
T ss_pred HHHHHHHhHhhcccceeeecccc-ceeecCCC-CCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCccc
Confidence 4899999999999 9999999 99999999 5799999999864 26666 567999999999999999999
Q ss_pred CCceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 72 NGSQFFITFRR-QHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 72 ~GSQFFItL~~-~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
+||||||||+. +.+|||+|+|||+|++|||+|.+|+..-++ +++|+++|+|.+.-||.++.
T Consensus 104 ~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPF 166 (479)
T KOG0415|consen 104 NGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPF 166 (479)
T ss_pred ccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCC
Confidence 99999999987 578999999999999999999999865554 88999999999999999974
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.93 E-value=1.2e-25 Score=209.16 Aligned_cols=119 Identities=50% Similarity=0.750 Sum_probs=107.0
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCC-CCCCceEEecccCCCCCCceEE
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLD-HNGPGILSMANSGANTNGSQFF 77 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~-H~~~GlLsMA~~g~ns~GSQFF 77 (603)
+.+|++||..++|+ ||+|+++ |+|||||+....+.+ ..++..|++|..... |+.+|+|+|++.+++++++|||
T Consensus 22 ~~nF~~l~~~~~Y~~~~f~rv~~~-~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~ 98 (146)
T cd00317 22 VENFLSLARGGFYDGTTFHRVIPG-FMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFF 98 (146)
T ss_pred HHHHHHHHhcCCcCCCEEEEEeCC-CeEEECCCCCCCCCC--CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEE
Confidence 46899999999999 9999999 999999986544322 456778999976655 8999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEe
Q 007440 78 ITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKII 123 (603)
Q Consensus 78 ItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~ 123 (603)
|+|.++++||++|+|||+|++||+||++|+.++++ ++.|+.+|+|.
T Consensus 99 Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 99 ITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred EECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 99999999999999999999999999999999987 89999999996
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.93 E-value=6.6e-26 Score=219.60 Aligned_cols=106 Identities=31% Similarity=0.506 Sum_probs=90.0
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCC-C-------------------CCCCccCCCCCC-----CCCCC
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGN-G-------------------TGGESIYGGKFT-----DENFK 53 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~-G-------------------~GG~SiyG~~f~-----dE~~~ 53 (603)
..+|++||+.+||+ |||||++ |||||||+...+ + ..+.++|+..|. +++..
T Consensus 22 ~~NF~~L~~~g~Ydg~~FhRVi~~-fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (176)
T cd01924 22 AGNFVDLVERGFYDGMEFHRVEGG-FVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPV 100 (176)
T ss_pred HHHHHHHHHhCCcCCCEEEEecCC-cEEEecCCCCCCCCcccccccccccccceecccCCCCCccCcccccccccccccc
Confidence 36899999999999 9999999 999999985431 1 123356665543 45677
Q ss_pred CCCCCCceEEecccC--CCCCCceEEEEcc-------CCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 007440 54 LDHNGPGILSMANSG--ANTNGSQFFITFR-------RQHHLDGKHVVFGKVVKGLNIVKKIEQ 108 (603)
Q Consensus 54 l~H~~~GlLsMA~~g--~ns~GSQFFItL~-------~~p~LDGk~vVFGrVVeGmEVL~kIe~ 108 (603)
+.|+.+|+|+||+.+ +|+++|||||+|. ++++||++|||||+||+|||||++|+.
T Consensus 101 ~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 101 LPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred cccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 889999999999987 6999999999998 899999999999999999999999965
No 27
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-26 Score=219.23 Aligned_cols=112 Identities=59% Similarity=0.999 Sum_probs=107.9
Q ss_pred EEE---EeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcE
Q 007440 16 HVL---IIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVV 92 (603)
Q Consensus 16 FhR---VIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQFFItL~~~p~LDGk~vV 92 (603)
||+ ++++ ||+||||++.++|+||.+||++.|.||++.++|..+|+|+|||.++|+|++|||||+....||||+|||
T Consensus 53 fhr~~~~~~~-fm~qggDft~hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVV 131 (167)
T KOG0865|consen 53 FHRLIPIIPG-FMCQGGDFTCHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 131 (167)
T ss_pred hhhccccccc-eeeccCcccccCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeE
Confidence 788 4558 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCHHHHHHHHhcCCCCCCCCCCeEEeeeeec
Q 007440 93 FGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 128 (603)
Q Consensus 93 FGrVVeGmEVL~kIe~v~t~~grP~~~I~I~~cGvl 128 (603)
||+|++||+||++|+.....++++...|.|.+||+|
T Consensus 132 fGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 132 FGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred cCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 999999999999999999999999999999999985
No 28
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.92 E-value=4.9e-25 Score=206.75 Aligned_cols=124 Identities=42% Similarity=0.649 Sum_probs=105.9
Q ss_pred hhhHHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCC-CccCCCCCCCCCC-CCCCCCCceEEecccC--CCCCCc
Q 007440 2 SSFFFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGG-ESIYGGKFTDENF-KLDHNGPGILSMANSG--ANTNGS 74 (603)
Q Consensus 2 ~slF~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG-~SiyG~~f~dE~~-~l~H~~~GlLsMA~~g--~ns~GS 74 (603)
+.+|++||..++|+ ||+|+++ ++||+|++......+. ....+..|++|.. .+.++.+|+|+|++.+ ++++++
T Consensus 25 ~~nF~~l~~~~~y~g~~f~ri~~~-~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~s 103 (155)
T PF00160_consen 25 VENFLRLCTSGFYDGTKFHRIIPN-FVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGS 103 (155)
T ss_dssp HHHHHHHHHTTSSTTEBEEEEETT-TEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSS
T ss_pred HHhhehhhcccccCCceeeccccc-ceeeeeeccCCCCcccccccCccccccccccccccccceeeeecccccCCCCCCc
Confidence 56899999999998 9999999 9999999865443111 1223446888863 4444489999999875 788999
Q ss_pred eEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCCCCCeEEeeeee
Q 007440 75 QFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKIIDCGE 127 (603)
Q Consensus 75 QFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~~grP~~~I~I~~cGv 127 (603)
||||+|.++++||++|+|||+|++||+||++|+.+++++ +|.++|+|.+|+|
T Consensus 104 qF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 104 QFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp EEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred eEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 999999999999999999999999999999999998888 9999999999997
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00072 Score=73.99 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=95.7
Q ss_pred HHHhhhcCceE---EEEEeCCCceEEeCCCCCCCCCCCCccC--C---CCCCCC--CCCCCCCCCceEEecccCCCCCCc
Q 007440 5 FFFSFTVHLFD---HVLIIQPFFPLQGGDFSKGNGTGGESIY--G---GKFTDE--NFKLDHNGPGILSMANSGANTNGS 74 (603)
Q Consensus 5 F~kL~~~g~Yd---FhRVIpg~f~IQgGD~~~g~G~GG~Siy--G---~~f~dE--~~~l~H~~~GlLsMA~~g~ns~GS 74 (603)
|.++|..++|+ |..|++. +++|.||..--...+|.--| + .+|+.. ++.++|. .-++.++..-..-.+.
T Consensus 130 ~~d~~q~~~fkklH~sPV~~i-~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 130 FGDFCQDGYFKKLHFSPVKKI-RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSF 207 (558)
T ss_pred cCCcCccceecccccCceEEE-EeeccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccce
Confidence 56778888888 7789999 99999996443333332111 1 124433 6677776 6777787766666788
Q ss_pred eEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCC-CCCCCCCeEEeeeeeccccc
Q 007440 75 QFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVKIIDCGEFSESK 132 (603)
Q Consensus 75 QFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe~v~t~-~grP~~~I~I~~cGvl~d~k 132 (603)
+|+|+-...+.|.-+..|||.|+++.+|++.|+.+.++ ...|..++.|.++.....-.
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 99999999999999999999999999999999988876 67788888888887765543
No 30
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.021 Score=58.76 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.7
Q ss_pred CCCCCCCCc
Q 007440 253 MSSRSSSDS 261 (603)
Q Consensus 253 ~~s~S~Sds 261 (603)
....|++..
T Consensus 283 ~a~~s~s~~ 291 (306)
T KOG2985|consen 283 VAASSDSEA 291 (306)
T ss_pred ccccCCCcc
Confidence 344444333
No 31
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.012 Score=63.41 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=73.9
Q ss_pred hhhHHHhhhcCceEEEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCC---CCCC-----CCCCceEEeccc--CCCC
Q 007440 2 SSFFFFSFTVHLFDHVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDEN---FKLD-----HNGPGILSMANS--GANT 71 (603)
Q Consensus 2 ~slF~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~---~~l~-----H~~~GlLsMA~~--g~ns 71 (603)
.+|.||++.+|.+...+|||| ..|..|+.++|....|..+-.+.|.--+ +.|. .+.-|--.|.+. .|+.
T Consensus 57 k~L~YKG~~FHRViK~FMiQg-GDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHL 135 (372)
T KOG0546|consen 57 KPLHYKGSRFHRVIKNFMIQG-GDFSEGNGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHL 135 (372)
T ss_pred CeeeecCchhheeeecceeec-cccccCCCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCc
Confidence 368999999999999999999 9999999999988777766666666432 2111 233444444432 2333
Q ss_pred CC--ceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH-hcCCCCCCCCCCeEEeeeee
Q 007440 72 NG--SQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 127 (603)
Q Consensus 72 ~G--SQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kIe-~v~t~~grP~~~I~I~~cGv 127 (603)
.| ..| |+.|-.=.||.-||-|..-+ ..|+.+..+..|.+|+.-..
T Consensus 136 dGkHVVF-----------GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 136 DGKHVVF-----------GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK 183 (372)
T ss_pred CCceeEE-----------eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence 33 455 55444445666666654222 24666777777777776655
No 32
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=93.01 E-value=0.27 Score=47.22 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=5.1
Q ss_pred EEEEEEeCHHHH
Q 007440 92 VFGKVVKGLNIV 103 (603)
Q Consensus 92 VFGrVVeGmEVL 103 (603)
.||.-|.+...|
T Consensus 23 a~~~~~rCQKCl 34 (177)
T KOG3116|consen 23 AVGSSARCQKCL 34 (177)
T ss_pred hcccchhHHHHH
Confidence 344444444443
No 33
>PRK00969 hypothetical protein; Provisional
Probab=88.90 E-value=0.94 Score=51.12 Aligned_cols=84 Identities=19% Similarity=0.380 Sum_probs=55.9
Q ss_pred hhHHHhhhcCceEEEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccC
Q 007440 3 SFFFFSFTVHLFDHVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRR 82 (603)
Q Consensus 3 slF~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQFFItL~~ 82 (603)
.-||.++..|.|...+...- |+.- +.+.|..++.|++.... .|+|.+-+.|.+.. ..||--.+
T Consensus 219 EH~la~~~~G~f~Vd~~tst-fI~d------------~~L~g~~~p~En~~~R~--~GtVTVRt~G~g~G--~vYIyred 281 (508)
T PRK00969 219 EHFLALLEDGTFEVDFETST-FIAD------------DRLQGLKIPEENFEPRR--RGTVTVRTAGVGVG--KVYIYRED 281 (508)
T ss_pred HHHHHHHhCCeEEEeeeecc-eEee------------ccccCccCCccccCccc--cceEEEEeeccCce--eEEEECCC
Confidence 45888888888875554444 3221 12334556667655444 59999988876543 36777766
Q ss_pred CCCCCCCCcEEEEEEeCHHHHH
Q 007440 83 QHHLDGKHVVFGKVVKGLNIVK 104 (603)
Q Consensus 83 ~p~LDGk~vVFGrVVeGmEVL~ 104 (603)
-+. .--|+|+|+|++|||+|+
T Consensus 282 r~s-s~sHtvVG~V~~GiELi~ 302 (508)
T PRK00969 282 RPS-SLSHTVVGRVTHGIELID 302 (508)
T ss_pred CCC-CccceeEEEEecceeeee
Confidence 442 135999999999999987
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=88.13 E-value=1.1 Score=50.59 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=55.2
Q ss_pred hhHHHhhhcCceEEEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccC
Q 007440 3 SFFFFSFTVHLFDHVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRR 82 (603)
Q Consensus 3 slF~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQFFItL~~ 82 (603)
.-||.++..|.|..-+...- |+-- +.+.|..++.|++... ..|+|.+-|.|.... ..||--.+
T Consensus 216 EH~la~~~~G~~~Vd~~tsT-fi~d------------~~L~g~~~p~En~~~R--~rGtVTVRn~G~G~G--~VYIYred 278 (503)
T TIGR03268 216 EHFLALMEDGTFRVDYRTST-FISD------------DSLRGLDKPEENIEKR--RRGAVTVRNSGVGEG--RVYIYRED 278 (503)
T ss_pred HHHHHHHhCCeEEEeeeecc-eEec------------ccccCccCCccccCcc--cceeEEEEeeccCce--eEEEEcCC
Confidence 35788888888875544444 3211 1233455666665444 459999988876543 36777666
Q ss_pred CCCCCCCCcEEEEEEeCHHHHHH
Q 007440 83 QHHLDGKHVVFGKVVKGLNIVKK 105 (603)
Q Consensus 83 ~p~LDGk~vVFGrVVeGmEVL~k 105 (603)
-+. .--|+|+|+|+.|||+|+-
T Consensus 279 r~s-s~sHtvVG~V~~GiELid~ 300 (503)
T TIGR03268 279 RPS-SLSHNVVGHVTRGIELIDI 300 (503)
T ss_pred CCC-CcccceeEEEecceeeeec
Confidence 442 1359999999999999873
No 35
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=1.2 Score=48.30 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 007440 190 SSESDSD 196 (603)
Q Consensus 190 ~s~s~sd 196 (603)
+++++++
T Consensus 227 d~~s~s~ 233 (426)
T KOG2812|consen 227 DSTSESS 233 (426)
T ss_pred ccccccc
Confidence 3333333
No 36
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=3.4 Score=42.98 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.5
Q ss_pred CCchhhhhc
Q 007440 207 SSSGDRRRR 215 (603)
Q Consensus 207 ~~~~~rRkr 215 (603)
|.+++...+
T Consensus 235 D~sd~e~~r 243 (306)
T KOG2985|consen 235 DESDDEDDR 243 (306)
T ss_pred ccccchhhh
Confidence 333444333
No 37
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=52.27 E-value=39 Score=39.22 Aligned_cols=17 Identities=35% Similarity=0.118 Sum_probs=7.4
Q ss_pred chhcchhhhcccccCCC
Q 007440 308 SHEEGELLLKNDKLQNN 324 (603)
Q Consensus 308 ~~~~~~~~~~n~~~~~~ 324 (603)
+++++..+.-||.++.|
T Consensus 347 ~h~~~~~pg~pGp~~~n 363 (757)
T KOG4368|consen 347 SHEGRGDPGWNGPWNNN 363 (757)
T ss_pred ccccCCCCCCCCCCCCC
Confidence 34444434445544433
No 38
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=20 Score=39.86 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=39.6
Q ss_pred cCCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHH
Q 007440 42 IYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKI 106 (603)
Q Consensus 42 iyG~~f~dE~~~l~H~~~GlLsMA~~g~ns~GSQFFItL~~~p~LDGk~vVFGrVVeGmEVL~kI 106 (603)
..+..++.||+.+.. .|.|.+-|.|-+. -..||--.+-+.. --|.|+|+|++|||+|+-.
T Consensus 244 lq~~~~~~en~d~Re--rG~iTvRn~Gvge--GrvYIyRedR~ss-~sHnvVGrV~eGiELid~a 303 (512)
T COG4070 244 LQEEKVPEENFDLRE--RGAITVRNVGVGE--GRVYIYREDRPSS-LSHNVVGRVIEGIELIDLA 303 (512)
T ss_pred cccccCChhhhhhhh--cceEEEEeeeccc--ceEEEEecCCCCc-cccceeeeeecceEEEEec
Confidence 334556666666554 4999888766443 3466665543321 2588999999999998743
No 39
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=48.39 E-value=44 Score=38.18 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=44.9
Q ss_pred EEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCceEEecccC---CCCCCceEEE--EccCCCC-CCCC
Q 007440 16 HVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG---ANTNGSQFFI--TFRRQHH-LDGK 89 (603)
Q Consensus 16 FhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE~~~l~H~~~GlLsMA~~g---~ns~GSQFFI--tL~~~p~-LDGk 89 (603)
+|+.+++ .+|--|+.. ++..+..||....-..+|.|+|-|.. ....|-.|-= .+++... ++|.
T Consensus 409 v~F~~~d-~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gT 477 (503)
T TIGR03268 409 VHFAFKE-MIMFKGNKE----------LAKGLIPENTPEDKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGT 477 (503)
T ss_pred EEEEeCC-eeEeccCch----------hccccCCCCCCCCccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCc
Confidence 7888888 433344432 22335556555555667888877643 2333322210 1133322 3444
Q ss_pred CcEEEEEEeCHHHHHHHHh
Q 007440 90 HVVFGKVVKGLNIVKKIEQ 108 (603)
Q Consensus 90 ~vVFGrVVeGmEVL~kIe~ 108 (603)
-|+|+||++||.|.+|..
T Consensus 478 -NIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 478 -NIIGRVVEGMERLKGLKE 495 (503)
T ss_pred -ceEEEecCChhHhccccc
Confidence 456999999999987754
No 40
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=11 Score=42.26 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=5.3
Q ss_pred CcEEEEEEeCH
Q 007440 90 HVVFGKVVKGL 100 (603)
Q Consensus 90 ~vVFGrVVeGm 100 (603)
|-|||.|-.=+
T Consensus 251 ~EiFGpV~~P~ 261 (483)
T KOG2236|consen 251 FEIFGPVKNPY 261 (483)
T ss_pred hhhhcccCCce
Confidence 44555554333
No 41
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=40.61 E-value=23 Score=32.79 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred CCCceEEecccCCCCCCceEEEEccCCC-------CCCCCCcEEEEEEeCHHHHHHHHh
Q 007440 57 NGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 108 (603)
Q Consensus 57 ~~~GlLsMA~~g~ns~GSQFFItL~~~p-------~LDGk~vVFGrVVeGmEVL~kIe~ 108 (603)
...|.|+.-..+.+ |.|-+++.| .+....++||+|+.|.++|..|..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 45677777544333 667777764 466779999999999999887743
No 42
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=35.45 E-value=29 Score=39.82 Aligned_cols=8 Identities=63% Similarity=0.613 Sum_probs=3.3
Q ss_pred CCCcCCCC
Q 007440 405 RGLSRSPS 412 (603)
Q Consensus 405 r~~srs~s 412 (603)
++-||+.+
T Consensus 389 rssSrsss 396 (653)
T KOG2548|consen 389 RSSSRSSS 396 (653)
T ss_pred cccccccc
Confidence 34444444
No 43
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=29.91 E-value=24 Score=37.07 Aligned_cols=6 Identities=33% Similarity=0.158 Sum_probs=2.4
Q ss_pred CcEEEE
Q 007440 90 HVVFGK 95 (603)
Q Consensus 90 ~vVFGr 95 (603)
+|++++
T Consensus 134 ~vp~~~ 139 (303)
T KOG3064|consen 134 LVPIKK 139 (303)
T ss_pred Eeecch
Confidence 344443
No 44
>PRK00969 hypothetical protein; Provisional
Probab=28.15 E-value=88 Score=35.93 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=36.0
Q ss_pred CCCceEEecccCCCCCCceEEEEccCCCCCCCC--CcEEEEEEeCHHHHHHHHh
Q 007440 57 NGPGILSMANSGANTNGSQFFITFRRQHHLDGK--HVVFGKVVKGLNIVKKIEQ 108 (603)
Q Consensus 57 ~~~GlLsMA~~g~ns~GSQFFItL~~~p~LDGk--~vVFGrVVeGmEVL~kIe~ 108 (603)
...+.|.|...|-+.-.+.|.|...+-...-|- --|||+||-|..||..|..
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 457778887777766666666666553222222 2799999999999988754
No 45
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=26.64 E-value=19 Score=39.81 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.5
Q ss_pred CCCCCC
Q 007440 409 RSPSPD 414 (603)
Q Consensus 409 rs~sp~ 414 (603)
+.|.++
T Consensus 412 ~~p~~E 417 (453)
T KOG3794|consen 412 RKPGEE 417 (453)
T ss_pred cCCchh
Confidence 444444
No 46
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=26 Score=33.70 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=25.7
Q ss_pred hHHHhhhcCceEEEEEeCCCceEEeCCCCCCC
Q 007440 4 FFFFSFTVHLFDHVLIIQPFFPLQGGDFSKGN 35 (603)
Q Consensus 4 lF~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~ 35 (603)
+=||.|.+|.++..++|+| ..+..||.++-.
T Consensus 58 iGYK~~tFHRvIkdFMiQg-GDFv~gDGtG~~ 88 (177)
T KOG0879|consen 58 IGYKNSTFHRVIKDFMIQG-GDFVNGDGTGVA 88 (177)
T ss_pred ccccccchHHHhhhheecc-CceecCCCceEE
Confidence 4588999999998889999 888889986543
No 47
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=14 Score=41.06 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.2
Q ss_pred CCCCCC
Q 007440 44 GGKFTD 49 (603)
Q Consensus 44 G~~f~d 49 (603)
|-.|.+
T Consensus 88 Grk~~k 93 (450)
T KOG3869|consen 88 GRKILK 93 (450)
T ss_pred cchhHH
Confidence 333333
No 48
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=23.79 E-value=50 Score=34.20 Aligned_cols=9 Identities=22% Similarity=-0.012 Sum_probs=4.0
Q ss_pred cCceEEEEE
Q 007440 11 VHLFDHVLI 19 (603)
Q Consensus 11 ~g~YdFhRV 19 (603)
.+-|+-|+|
T Consensus 11 g~~fCS~ri 19 (303)
T COG5129 11 GENFCSFRI 19 (303)
T ss_pred cccccceee
Confidence 344444444
No 49
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=47 Score=33.85 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHhhhcCceEEEEEeCCCceEEeCCCCCCCCCCCCccCCCCCCCC
Q 007440 6 FFSFTVHLFDHVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFTDE 50 (603)
Q Consensus 6 ~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~dE 50 (603)
|++..+|.++-.++||| ..|.-||.+++....|+.+..+.|...
T Consensus 85 Y~gS~FhRVi~nfmIQG-Gd~t~g~gtGg~SIyG~~F~DENf~Lk 128 (217)
T KOG0880|consen 85 YKGSKFHRVIPNFMIQG-GDFTKGDGTGGKSIYGEKFPDENFKLK 128 (217)
T ss_pred cCCceeeeeecCceeec-CccccCCCCCCeEeecCCCCCccceee
Confidence 67788999997889999 999999988886555555555554443
No 50
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=23 Score=36.55 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred hhHHHhhhcCceEEEEEeCCCceEEeCCCCCCCCCCCCccCCCCCC
Q 007440 3 SFFFFSFTVHLFDHVLIIQPFFPLQGGDFSKGNGTGGESIYGGKFT 48 (603)
Q Consensus 3 slF~kL~~~g~YdFhRVIpg~f~IQgGD~~~g~G~GG~SiyG~~f~ 48 (603)
.|=|++|.+|.++-.++.+| ..|..|+.++|....|..+..+.|.
T Consensus 178 gfgykgssfhriip~fmcqg-gdftn~ngtggksiygkkfddenf~ 222 (298)
T KOG0111|consen 178 GFGYKGSSFHRIIPKFMCQG-GDFTNGNGTGGKSIYGKKFDDENFT 222 (298)
T ss_pred ccCccccchhhhhhhhhccC-CccccCCCCCCccccccccccccee
Confidence 35588999999996668899 8999999988866666544444443
Done!