BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007443
(603 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 207/511 (40%), Positives = 292/511 (57%), Gaps = 27/511 (5%)
Query: 74 WDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVA 133
+D P L LV++ L+ L + L +L E+R L VS++ S L VELTVA
Sbjct: 3 FDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVA 62
Query: 134 LHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGH 193
LH+V++ P D+++WDVG Q Y HKILTGRR I T+R+K G+ + R ESEYD + GH
Sbjct: 63 LHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGH 122
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
S+SAG+G+AVA + +GK V VI +G AG A+EA ++AG + + +VILND+
Sbjct: 123 SSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDN- 181
Query: 254 HSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313
E S ++ AL++ L+++ S K + LRE K + + + E + +E+
Sbjct: 182 -------EXSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGV-PPIKELLKRTEEHI 233
Query: 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAE 373
+G + P TLFEELG YIGPVDGH++ LI+ L+ L GP +H+ T++ R E
Sbjct: 234 KGXVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNXRDL--KGPQFLHIXTKKGRGYE 289
Query: 374 DTQKS----EAIEKQQEGAS----DSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVH 425
+K A+ K + S LP +YS+ + D E A KD + +
Sbjct: 290 PAEKDPITFHAVPKFDPSSGCLPKSSGGLP--SYSKIFGDWLCET----AAKDNKLXAIT 343
Query: 426 AGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485
F KFP+RYFDV +AEQHAVTF+AGLA GG KP I S FLQRAYDQV
Sbjct: 344 PAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQV 403
Query: 486 VNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545
++DV Q+LPV F I AG+VG+DG T GAFD++++ C+P ++ PSDE+E + T
Sbjct: 404 LHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYT 463
Query: 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGIPI 576
+D P RYPRG V +L +PI
Sbjct: 464 GYHYNDGPSAVRYPRGNAVGVELTPLEKLPI 494
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/486 (36%), Positives = 268/486 (55%), Gaps = 17/486 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD + P LK L+ ++L L E+R E+ + S+ L SSL AV++ ALH+V
Sbjct: 10 TPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVL 69
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+P D+IL+DVG Q YAHKILTGRR + ++K+ GISG+T SESE+D GH S+
Sbjct: 70 DSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSL 129
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
+ LGMA+ARD +GK + VI +G+ G A A++ G + M+++LND+
Sbjct: 130 TNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN------ 183
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
E S ++ A++ + +Q K F++ K + + + + ++ ++ R
Sbjct: 184 --EMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
P F +G+ Y+GPVDGHN+++L+ +L+ + L GP ++H+VT + + ++
Sbjct: 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLD--GPTILHIVTTKG-KGLSYAEA 298
Query: 379 EAIEKQQEGASDSNS---LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ 435
+ I D + +P YS + F EA+ A+ D VV M L
Sbjct: 299 DPIYWHGPAKFDPATGEYVPSSAYS--WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLV 356
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
F P RY DVG+AE+ AVT +AG+A G++P I S FLQRAYDQV++DV + L
Sbjct: 357 EFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLN 416
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
V F I AG+VG+DG T G FD++F+ +P + + P D EL M+ A D P
Sbjct: 417 VTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGML-KYAQTHDGPFA 475
Query: 556 FRYPRG 561
RYPRG
Sbjct: 476 IRYPRG 481
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLK-PFCIIPSAFLQRAYDQVVNDVDQQR 493
++F+++ P+R+ + +AEQ+ V+ + G A PFC +AF RA+DQ+ +
Sbjct: 345 EIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISES 404
Query: 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD---EDELVDMVATVASI 549
+ + G+ +G DGP+Q D+ +P V PSD ++ V++ A
Sbjct: 405 -NINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA----- 458
Query: 550 DDRPVCF---RYPRGAIVRTD 567
+ + +CF P AI+ +
Sbjct: 459 NTKGICFIRTSRPENAIIYNN 479
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLK-PFCIIPSAFLQRAYDQVVNDVDQQR 493
++F+++ P+R+ + +AEQ+ V+ + G A PFC +AF RA+DQ+ +
Sbjct: 347 EIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISES 406
Query: 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD---EDELVDMVATVASI 549
+ + G+ +G DGP+Q D+ +P V PSD ++ V++ A I
Sbjct: 407 -NINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGI 465
Query: 550 DDRPVCF---RYPRGAIVRTD 567
CF P AI+ +
Sbjct: 466 -----CFIRTSRPENAIIYNN 481
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 41/190 (21%)
Query: 404 DDCFIEALVMEAEKDKDI-VVVHAGMEMD-----------------LSLQLFQEKF-PER 444
DD + +VM A K I + +H ME D L + E+F PER
Sbjct: 40 DDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPER 99
Query: 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDVDQQR---------- 493
D + E + F+ G+A GLKP I F+ D+++N + + R
Sbjct: 100 VIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP 159
Query: 494 LPVRFVI---TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550
L VR + T GL S+ P + F+ P ++V+ PS ++ D
Sbjct: 160 LVVRTPVGSGTRGGLYHSNSP------EAIFVHT-PGLVVVMPSTPYNAKGLLKAAIRGD 212
Query: 551 DRPVCFRYPR 560
D PV F P+
Sbjct: 213 D-PVVFLEPK 221
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 493 RLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551
+LPV +V T + VG DGPT + + PN+ V+ P+D +E V +
Sbjct: 477 QLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXPNVSVIRPADGNESVAAWRLALESTN 536
Query: 552 RPVCFRYPRGAIVRTDLPGYRGIPIEVVTRHASCTCLI 589
+P + R DLP G + + A ++
Sbjct: 537 KPTAL-----VLTRQDLPTLEGAKDDTYEKVAKGAYVV 569
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 145 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 204 FAISTPVEKQ 213
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 146 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 205 FAISTPVEKQ 214
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 135 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 194
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 195 FICENNRYGMGTSVERAAAST 215
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G Y+ ++ AG + I ++ ++R
Sbjct: 145 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR 203
Query: 254 HSLHPKIEES 263
++ +E+
Sbjct: 204 FAISTPVEKQ 213
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTSVERAAAST 232
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTSVERAAAST 232
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTAVERAAAST 232
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 152 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCI 211
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ + +E + ++
Sbjct: 212 FICENNRYGMGTAVERAAAST 232
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253
G + A G+A+ ++GK+ +T +G T G YE ++ AG + I ++ ++R
Sbjct: 146 GAQYIQAA-GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
Query: 254 HSLHPKIEES 263
+ +E+
Sbjct: 205 FAASTPVEKQ 214
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 189 FNAGHGC--NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI 246
F G+G V G G+A+A GK E +T+ +G GQ +EA + A I
Sbjct: 135 FYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCI 194
Query: 247 VILNDSRHSLHPKIEESPKTS 267
I ++R+ +E + ++
Sbjct: 195 FICENNRYGXGTSVERAAAST 215
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 23/175 (13%)
Query: 397 GNYSRTYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMA 451
G+ T D + + E E+D+ + V +S L+++ +R D ++
Sbjct: 11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 70
Query: 452 EQHAVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDVDQ--------QRLPVRFV--- 499
E + G A GL+P C + F +A DQV+N + Q +P+ F
Sbjct: 71 EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN 130
Query: 500 ITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPV 554
SAG+ +QC F + C P + V++P + ++ ++ + A D+ PV
Sbjct: 131 GASAGVAAQH--SQC--FAAWYGHC-PGLKVVSPWNSEDAKGLIKS-AIRDNNPV 179
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 402 TYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
T D + + E E+D+ + V +S L+++ +R D ++E
Sbjct: 4 TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFA 63
Query: 457 TFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDVDQ--------QRLPVRFV---ITSAG 504
+ G A GL+P C + F +A DQV+N + Q +P+ F SAG
Sbjct: 64 GIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAG 123
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPV 554
+ +QC F + C P + V++P + ++ ++ + A D+ PV
Sbjct: 124 VAAQH--SQC--FAAWYGHC-PGLKVVSPWNSEDAKGLIKS-AIRDNNPV 167
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT--SAGLVGSDGPTQCGAFDITFM 522
GG KPF F + + + ++P FV T S GL G DGPT + +
Sbjct: 471 GGYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASL 528
Query: 523 SCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAI---VRTD 567
+PN+ V P+D E + T A P C + R + RTD
Sbjct: 529 RLIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQNLAFNARTD 575
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT--SAGLVGSDGPTQCGAFDITFM 522
GG KPF F + + + ++P FV T S GL G DGPT + +
Sbjct: 471 GGYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASL 528
Query: 523 SCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAI---VRTD 567
+PN+ V P+D E + T A P C + R + RTD
Sbjct: 529 RLIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQNLAFNARTD 575
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDVDQQR 493
L Q+ P+R D ++E V + G+A GL+P I A ++ +DQ+V+ V + R
Sbjct: 44 LLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLR 102
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 460 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 519
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTR 581
A+ R +LP G IE ++
Sbjct: 520 SII-----ALSRQNLPQLEGSSIESASK 542
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 462 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 521
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTR 581
A+ R +LP G IE ++
Sbjct: 522 SII-----ALSRQNLPQLEGSSIESASK 544
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 495 PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
PV +V T + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 462 PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTP 521
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTR 581
A+ R +LP G IE ++
Sbjct: 522 SII-----ALSRQNLPQLEGSSIESASK 544
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 496 VRFVIT--SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
V +V+T S GL G DGPT + +PN++++ P+D +E RP
Sbjct: 468 VIYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRP 526
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTR 581
A+ R LP G IE V +
Sbjct: 527 SIL-----ALSRQKLPHLPGTSIEGVEK 549
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 444 RYFDVGMAEQHAVTFSAGL-ACGGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVIT 501
RY G+ E GL A G+ PF F+ A V + + R V +V T
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHR--VIYVAT 460
Query: 502 SAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
+ VG DGPT + + +PN+ V+ PSD+ E
Sbjct: 461 HDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTE 498
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 445 YFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVITS 502
Y G+ E + G++ GG P+ F++ A + V + + +QR + + S
Sbjct: 403 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 462
Query: 503 AGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
GL G DGPT + + PNM P D+ E
Sbjct: 463 IGL-GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 497
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 445 YFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPVRFVITS 502
Y G+ E + G++ GG P+ F++ A + V + + +QR + + S
Sbjct: 404 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 463
Query: 503 AGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
GL G DGPT + + PNM P D+ E
Sbjct: 464 IGL-GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 498
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 416 EKDKDIVVVHAGMEMDLSLQLF------QEKFPE-RYFDVGMAEQHAVTFSAGLACGGLK 468
E+D ++VV G ++ +F Q K+ + R FD ++E V + G+ GL+
Sbjct: 21 ERDDNVVVY--GQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLR 78
Query: 469 PFCIIPSA-FLQRAYDQVVNDVDQQRL--------PVRFVI-TSAGLVGSDGPTQCGAFD 518
P I A + A DQ+V+++ + R P+ + G+ G +Q
Sbjct: 79 PVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAM 138
Query: 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCFRYPRGAIVRTDLPGYRGIPIE 577
T + L ++ P D L+ +ASI+ D PV F P+ + G+ P+
Sbjct: 139 FTQVCGLRTVMPSNPYDAKGLL-----IASIECDDPVIFLEPK-RLYNGPFDGHHDRPVT 192
Query: 578 VVTRH 582
++H
Sbjct: 193 PWSKH 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,607,569
Number of Sequences: 62578
Number of extensions: 644610
Number of successful extensions: 1595
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 40
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)