Query 007443
Match_columns 603
No_of_seqs 344 out of 2396
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 23:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2E-132 5E-137 1074.1 50.3 510 79-602 2-520 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 4E-131 9E-136 1104.2 56.4 579 1-602 1-586 (701)
3 PLN02234 1-deoxy-D-xylulose-5- 100.0 5E-121 1E-125 1022.8 54.2 530 40-602 21-563 (641)
4 PLN02582 1-deoxy-D-xylulose-5- 100.0 3E-116 5E-121 992.2 58.3 539 64-602 16-562 (677)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2E-109 5E-114 937.4 56.2 507 82-602 1-514 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 2E-107 4E-112 924.6 55.7 514 76-602 3-523 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 1E-100 3E-105 861.5 52.1 471 81-602 2-479 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.7E-96 6E-101 828.7 51.9 474 76-602 1-482 (580)
9 PTZ00089 transketolase; Provis 100.0 4.3E-84 9.3E-89 736.4 49.6 446 98-602 5-567 (661)
10 PRK12753 transketolase; Review 100.0 4.6E-83 1E-87 726.9 47.7 448 100-602 5-568 (663)
11 PLN02790 transketolase 100.0 4.8E-82 1E-86 718.8 47.5 438 106-601 1-558 (654)
12 KOG0523 Transketolase [Carbohy 100.0 7.3E-83 1.6E-87 685.2 38.2 451 79-602 2-524 (632)
13 PRK05899 transketolase; Review 100.0 1.7E-81 3.6E-86 714.2 48.7 450 94-602 3-529 (624)
14 PRK12754 transketolase; Review 100.0 5E-79 1.1E-83 690.3 48.2 446 100-601 5-567 (663)
15 TIGR00232 tktlase_bact transke 100.0 2.1E-78 4.5E-83 689.0 47.9 444 101-602 2-559 (653)
16 PF13292 DXP_synthase_N: 1-deo 100.0 3E-79 6.5E-84 610.1 16.2 270 82-366 1-270 (270)
17 COG0021 TktA Transketolase [Ca 100.0 6.3E-72 1.4E-76 607.4 42.7 451 96-601 3-566 (663)
18 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.1E-70 2.4E-75 628.5 49.1 450 97-602 73-743 (889)
19 PRK13012 2-oxoacid dehydrogena 100.0 2.8E-69 6E-74 619.5 48.5 470 78-601 67-750 (896)
20 PRK09405 aceE pyruvate dehydro 100.0 2.3E-68 4.9E-73 609.5 49.4 468 78-601 59-745 (891)
21 TIGR00759 aceE pyruvate dehydr 100.0 2.1E-52 4.5E-57 472.9 46.0 469 78-601 53-739 (885)
22 COG3958 Transketolase, C-termi 100.0 6.7E-48 1.5E-52 386.3 20.8 200 400-602 6-211 (312)
23 COG3959 Transketolase, N-termi 100.0 1.2E-44 2.5E-49 350.5 23.1 222 94-369 5-243 (243)
24 cd02007 TPP_DXS Thiamine pyrop 100.0 7.6E-44 1.6E-48 349.9 22.0 195 118-372 1-195 (195)
25 PF00456 Transketolase_N: Tran 100.0 2.6E-42 5.7E-47 362.9 18.5 231 100-385 2-262 (332)
26 CHL00144 odpB pyruvate dehydro 100.0 9.2E-42 2E-46 359.5 22.1 198 400-602 3-220 (327)
27 PRK05261 putative phosphoketol 100.0 2E-39 4.2E-44 368.0 41.0 425 116-602 47-633 (785)
28 PRK09212 pyruvate dehydrogenas 100.0 2.4E-41 5.2E-46 356.7 22.8 199 400-602 3-220 (327)
29 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.2E-40 2.5E-45 351.6 25.5 229 100-382 5-334 (386)
30 PLN02683 pyruvate dehydrogenas 100.0 1.2E-40 2.7E-45 354.3 23.5 201 399-602 25-247 (356)
31 PRK09404 sucA 2-oxoglutarate d 100.0 2.3E-38 4.9E-43 366.7 39.3 452 93-601 185-824 (924)
32 PTZ00182 3-methyl-2-oxobutanat 100.0 7E-40 1.5E-44 348.4 21.8 201 399-602 33-252 (355)
33 PRK11892 pyruvate dehydrogenas 100.0 8.6E-40 1.9E-44 357.3 23.0 201 399-602 140-359 (464)
34 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.3E-39 2.9E-44 328.7 19.4 198 401-602 2-219 (324)
35 cd02012 TPP_TK Thiamine pyroph 100.0 1.4E-38 3.1E-43 325.1 24.7 226 105-384 2-245 (255)
36 COG2609 AceE Pyruvate dehydrog 100.0 1.3E-36 2.9E-41 330.2 38.5 509 77-602 55-743 (887)
37 cd07033 TPP_PYR_DXS_TK_like Py 100.0 5.4E-38 1.2E-42 298.0 19.0 154 406-560 2-156 (156)
38 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.8E-36 6.1E-41 347.8 30.8 356 189-601 312-829 (929)
39 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 8E-36 1.7E-40 285.8 16.5 153 405-560 1-167 (167)
40 PF02779 Transket_pyr: Transke 100.0 2.6E-35 5.6E-40 285.4 12.5 165 399-564 1-176 (178)
41 smart00861 Transket_pyr Transk 100.0 1.6E-31 3.5E-36 256.1 18.3 158 402-561 1-167 (168)
42 KOG0524 Pyruvate dehydrogenase 100.0 4.8E-32 1E-36 267.5 14.8 200 399-601 33-254 (359)
43 KOG0525 Branched chain alpha-k 100.0 6.2E-29 1.3E-33 242.2 10.2 199 399-601 39-257 (362)
44 COG1071 AcoA Pyruvate/2-oxoglu 99.9 2.5E-23 5.5E-28 218.3 21.5 229 92-377 22-271 (358)
45 CHL00149 odpA pyruvate dehydro 99.9 1.3E-21 2.7E-26 207.7 25.1 230 87-376 10-268 (341)
46 PLN02269 Pyruvate dehydrogenas 99.9 1.1E-21 2.4E-26 209.1 24.4 226 92-376 25-268 (362)
47 PLN02374 pyruvate dehydrogenas 99.9 9.9E-21 2.1E-25 205.6 26.8 225 93-376 82-334 (433)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 8.5E-21 1.8E-25 197.9 23.2 200 118-374 25-235 (293)
49 PF00676 E1_dh: Dehydrogenase 99.9 1.5E-20 3.2E-25 196.6 20.6 205 116-376 21-234 (300)
50 TIGR03181 PDH_E1_alph_x pyruva 99.9 5.7E-20 1.2E-24 195.4 25.3 230 87-376 14-255 (341)
51 TIGR03182 PDH_E1_alph_y pyruva 99.9 5.8E-20 1.3E-24 193.4 23.7 201 119-376 32-243 (315)
52 cd02011 TPP_PK Thiamine pyroph 99.8 2.2E-18 4.8E-23 171.6 15.4 168 149-373 2-209 (227)
53 KOG0225 Pyruvate dehydrogenase 99.8 4.9E-18 1.1E-22 173.1 17.4 226 88-377 50-297 (394)
54 cd02016 TPP_E1_OGDC_like Thiam 99.7 3.3E-17 7.1E-22 167.1 16.9 135 189-376 110-255 (265)
55 KOG1182 Branched chain alpha-k 99.7 5E-16 1.1E-20 157.0 11.4 126 190-368 191-319 (432)
56 cd00568 TPP_enzymes Thiamine p 99.6 3.1E-15 6.6E-20 142.4 14.5 127 188-366 42-168 (168)
57 COG3957 Phosphoketolase [Carbo 99.6 1.2E-13 2.6E-18 152.8 26.0 420 118-595 60-635 (793)
58 cd02004 TPP_BZL_OCoD_HPCL Thia 99.6 6.6E-14 1.4E-18 134.7 16.4 125 190-366 46-171 (172)
59 cd02013 TPP_Xsc_like Thiamine 99.6 1.4E-13 3.1E-18 135.5 17.7 129 190-371 51-183 (196)
60 cd03371 TPP_PpyrDC Thiamine py 99.5 4.7E-13 1E-17 131.1 17.0 121 189-371 45-167 (188)
61 cd02015 TPP_AHAS Thiamine pyro 99.5 6E-13 1.3E-17 129.8 16.9 127 190-370 48-177 (186)
62 cd02003 TPP_IolD Thiamine pyro 99.5 1E-12 2.2E-17 130.3 18.2 139 189-370 45-187 (205)
63 PRK06163 hypothetical protein; 99.5 1.3E-12 2.8E-17 129.3 17.9 122 190-373 55-179 (202)
64 cd02002 TPP_BFDC Thiamine pyro 99.5 1E-12 2.2E-17 127.0 16.8 131 189-366 47-178 (178)
65 cd03372 TPP_ComE Thiamine pyro 99.5 1E-12 2.2E-17 127.7 15.4 118 190-371 40-159 (179)
66 cd02014 TPP_POX Thiamine pyrop 99.5 2.2E-12 4.7E-17 125.1 17.0 125 190-368 49-174 (178)
67 cd02006 TPP_Gcl Thiamine pyrop 99.5 3.7E-12 8E-17 126.0 18.9 140 190-370 55-197 (202)
68 cd02010 TPP_ALS Thiamine pyrop 99.4 2.4E-12 5.2E-17 124.9 16.1 126 189-368 45-171 (177)
69 cd02001 TPP_ComE_PpyrDC Thiami 99.4 1.9E-12 4E-17 123.3 15.0 116 190-369 40-157 (157)
70 cd02008 TPP_IOR_alpha Thiamine 99.4 5.5E-13 1.2E-17 129.3 11.4 126 190-366 49-176 (178)
71 cd02005 TPP_PDC_IPDC Thiamine 99.4 2E-12 4.3E-17 126.1 13.7 122 190-368 48-175 (183)
72 PRK12270 kgd alpha-ketoglutara 99.4 8.1E-11 1.8E-15 134.8 27.1 315 193-564 620-1079(1228)
73 PF02775 TPP_enzyme_C: Thiamin 99.4 1.5E-12 3.2E-17 122.9 10.9 128 189-364 25-153 (153)
74 cd06586 TPP_enzyme_PYR Pyrimid 99.4 4.2E-12 9.2E-17 119.0 13.6 122 438-560 30-154 (154)
75 TIGR03846 sulfopy_beta sulfopy 99.4 8.1E-12 1.8E-16 121.6 15.9 118 190-370 40-159 (181)
76 PRK11864 2-ketoisovalerate fer 99.4 5.8E-12 1.3E-16 130.9 14.7 149 188-375 65-217 (300)
77 TIGR03297 Ppyr-DeCO2ase phosph 99.4 1.4E-11 3.1E-16 132.0 17.4 166 125-371 172-340 (361)
78 cd02009 TPP_SHCHC_synthase Thi 99.3 1.2E-11 2.7E-16 119.6 14.1 125 190-366 49-174 (175)
79 COG0028 IlvB Thiamine pyrophos 99.3 3E-11 6.6E-16 136.2 18.9 167 129-369 363-533 (550)
80 PRK06112 acetolactate synthase 99.3 1.5E-10 3.2E-15 131.9 18.8 126 190-368 435-561 (578)
81 PRK08322 acetolactate synthase 99.3 3.8E-10 8.2E-15 127.6 21.2 126 190-369 404-530 (547)
82 TIGR02418 acolac_catab acetola 99.2 1.8E-10 3.9E-15 130.1 18.4 172 125-369 359-532 (539)
83 PRK06546 pyruvate dehydrogenas 99.2 1.6E-10 3.5E-15 131.5 17.8 131 190-374 406-538 (578)
84 PRK06154 hypothetical protein; 99.2 3E-10 6.4E-15 129.1 19.7 174 125-370 381-558 (565)
85 PRK08199 thiamine pyrophosphat 99.2 1.4E-10 3E-15 131.6 16.8 127 190-369 413-540 (557)
86 TIGR01504 glyox_carbo_lig glyo 99.2 1.3E-10 2.8E-15 132.6 16.4 183 125-368 369-556 (588)
87 PRK08611 pyruvate oxidase; Pro 99.2 4E-10 8.6E-15 128.3 20.2 127 190-370 406-533 (576)
88 PRK09124 pyruvate dehydrogenas 99.2 3.8E-10 8.2E-15 128.4 19.8 127 190-370 406-533 (574)
89 PRK06457 pyruvate dehydrogenas 99.2 3.7E-10 8.1E-15 127.8 19.5 125 190-368 394-520 (549)
90 PRK08273 thiamine pyrophosphat 99.2 4.3E-10 9.4E-15 128.5 20.2 175 125-370 366-549 (597)
91 PRK06965 acetolactate synthase 99.2 1.8E-10 3.8E-15 131.5 17.0 173 125-370 388-565 (587)
92 PRK09107 acetolactate synthase 99.2 2.2E-10 4.8E-15 130.8 17.7 173 125-368 380-555 (595)
93 cd03375 TPP_OGFOR Thiamine pyr 99.2 1E-10 2.2E-15 115.1 12.7 134 191-367 50-184 (193)
94 cd03376 TPP_PFOR_porB_like Thi 99.2 8.9E-11 1.9E-15 119.0 12.7 141 190-367 60-200 (235)
95 PRK05858 hypothetical protein; 99.2 5.2E-10 1.1E-14 126.5 20.2 172 125-370 358-533 (542)
96 PRK08266 hypothetical protein; 99.2 1.1E-10 2.4E-15 131.9 14.4 129 190-371 400-529 (542)
97 PRK07524 hypothetical protein; 99.2 2.1E-10 4.6E-15 129.3 16.5 128 190-371 405-533 (535)
98 PRK07586 hypothetical protein; 99.2 3E-10 6.5E-15 127.5 17.5 127 192-366 385-514 (514)
99 TIGR02720 pyruv_oxi_spxB pyruv 99.2 6.6E-10 1.4E-14 126.5 20.5 171 125-369 359-534 (575)
100 PRK12474 hypothetical protein; 99.2 3.1E-10 6.8E-15 127.6 17.4 126 192-366 389-518 (518)
101 PRK08978 acetolactate synthase 99.2 4.7E-10 1E-14 127.0 18.5 127 190-369 399-527 (548)
102 PRK09259 putative oxalyl-CoA d 99.2 4.3E-10 9.3E-15 127.9 17.5 174 125-370 373-549 (569)
103 PLN02470 acetolactate synthase 99.2 2.2E-10 4.7E-15 130.7 15.1 134 190-369 424-559 (585)
104 PRK08155 acetolactate synthase 99.2 2.6E-10 5.6E-15 129.5 15.6 126 190-368 417-544 (564)
105 PRK07092 benzoylformate decarb 99.2 4.5E-10 9.7E-15 126.6 17.2 123 191-366 406-529 (530)
106 TIGR03254 oxalate_oxc oxalyl-C 99.2 7.3E-10 1.6E-14 125.6 18.9 172 125-369 366-540 (554)
107 PRK06456 acetolactate synthase 99.2 3E-10 6.5E-15 129.2 15.7 126 190-368 419-546 (572)
108 TIGR03457 sulphoacet_xsc sulfo 99.2 4.7E-10 1E-14 127.8 17.1 131 190-371 428-561 (579)
109 PRK06725 acetolactate synthase 99.2 6E-10 1.3E-14 126.7 17.4 171 125-368 373-546 (570)
110 PRK06466 acetolactate synthase 99.2 6.4E-10 1.4E-14 126.6 17.6 173 125-369 374-550 (574)
111 PRK08527 acetolactate synthase 99.2 7.2E-10 1.6E-14 125.9 17.9 173 125-370 365-541 (563)
112 PRK07064 hypothetical protein; 99.2 3.1E-10 6.8E-15 128.2 14.9 126 192-370 405-531 (544)
113 PRK11865 pyruvate ferredoxin o 99.2 6.8E-10 1.5E-14 115.6 15.7 153 188-375 65-221 (299)
114 cd02018 TPP_PFOR Thiamine pyro 99.2 4.2E-10 9E-15 114.2 13.8 140 190-367 62-203 (237)
115 TIGR03393 indolpyr_decarb indo 99.2 2E-10 4.3E-15 129.8 12.8 121 190-367 402-527 (539)
116 PRK07979 acetolactate synthase 99.2 9.2E-10 2E-14 125.3 18.1 173 125-368 372-549 (574)
117 CHL00099 ilvB acetohydroxyacid 99.2 7.6E-10 1.6E-14 126.3 17.4 129 189-368 427-556 (585)
118 PRK06048 acetolactate synthase 99.1 7.8E-10 1.7E-14 125.6 17.4 126 190-368 412-539 (561)
119 PRK07418 acetolactate synthase 99.1 7E-10 1.5E-14 127.3 17.0 171 125-369 387-561 (616)
120 PRK08979 acetolactate synthase 99.1 1.1E-09 2.3E-14 124.7 17.9 173 125-368 372-547 (572)
121 PRK11269 glyoxylate carboligas 99.1 7.1E-10 1.5E-14 126.6 16.4 138 190-368 417-557 (591)
122 PRK07789 acetolactate synthase 99.1 7.3E-10 1.6E-14 127.1 16.4 176 125-368 398-577 (612)
123 PRK08617 acetolactate synthase 99.1 1.8E-09 3.8E-14 122.4 19.2 127 190-370 412-539 (552)
124 PRK06882 acetolactate synthase 99.1 1.4E-09 3.1E-14 123.7 18.3 129 190-369 419-548 (574)
125 PRK07710 acetolactate synthase 99.1 1.6E-09 3.4E-14 123.3 18.5 128 190-370 422-551 (571)
126 PRK07525 sulfoacetaldehyde ace 99.1 1.2E-09 2.6E-14 124.7 17.5 175 125-371 386-566 (588)
127 TIGR00118 acolac_lg acetolacta 99.1 7.6E-10 1.6E-14 125.5 15.6 128 190-369 410-538 (558)
128 PRK07282 acetolactate synthase 99.1 8.8E-10 1.9E-14 125.3 13.7 125 190-368 416-542 (566)
129 PRK06276 acetolactate synthase 99.1 1.7E-09 3.7E-14 123.4 15.8 126 190-368 417-544 (586)
130 PRK11869 2-oxoacid ferredoxin 99.1 8.4E-10 1.8E-14 114.2 11.1 133 192-368 60-194 (280)
131 PRK11866 2-oxoacid ferredoxin 99.0 1.1E-09 2.3E-14 113.5 11.4 130 191-367 58-192 (279)
132 PF09364 XFP_N: XFP N-terminal 99.0 3E-09 6.5E-14 111.4 14.3 197 117-374 46-288 (379)
133 PLN02573 pyruvate decarboxylas 99.0 2.1E-09 4.6E-14 122.4 13.8 121 190-367 426-552 (578)
134 PRK08327 acetolactate synthase 99.0 4.2E-09 9.2E-14 119.8 15.9 134 190-366 428-566 (569)
135 PRK05778 2-oxoglutarate ferred 99.0 2E-09 4.4E-14 112.6 11.7 129 192-367 70-203 (301)
136 PRK07449 2-succinyl-5-enolpyru 99.0 1.6E-08 3.5E-13 114.9 17.9 126 190-367 423-549 (568)
137 PRK09628 oorB 2-oxoglutarate-a 98.9 4.9E-09 1.1E-13 108.5 11.4 132 192-370 68-204 (277)
138 PRK11867 2-oxoglutarate ferred 98.9 6.4E-09 1.4E-13 108.3 11.6 131 192-370 69-205 (286)
139 TIGR03336 IOR_alpha indolepyru 98.8 1.2E-08 2.5E-13 116.8 11.2 126 191-366 402-529 (595)
140 KOG0451 Predicted 2-oxoglutara 98.8 1.2E-07 2.7E-12 102.8 17.5 380 128-563 191-765 (913)
141 COG4231 Indolepyruvate ferredo 98.8 6.4E-09 1.4E-13 115.4 7.9 127 191-367 427-554 (640)
142 TIGR02177 PorB_KorB 2-oxoacid: 98.8 2.2E-08 4.8E-13 104.1 10.8 130 192-367 53-186 (287)
143 TIGR03394 indol_phenyl_DC indo 98.8 1.7E-08 3.7E-13 114.1 10.6 121 190-368 401-522 (535)
144 COG3961 Pyruvate decarboxylase 98.7 3.9E-08 8.4E-13 107.0 9.5 172 125-368 363-536 (557)
145 KOG4166 Thiamine pyrophosphate 98.7 2.3E-07 4.9E-12 98.4 13.6 177 122-368 469-648 (675)
146 PLN02980 2-oxoglutarate decarb 98.5 2.6E-07 5.7E-12 116.4 11.4 129 190-368 757-890 (1655)
147 COG3962 Acetolactate synthase 98.3 1.3E-05 2.8E-10 86.3 15.9 133 186-367 438-575 (617)
148 KOG1184 Thiamine pyrophosphate 98.2 1.7E-06 3.6E-11 94.2 7.0 61 190-256 413-474 (561)
149 PRK09193 indolepyruvate ferred 98.2 2.8E-06 6.1E-11 102.1 9.5 120 190-366 479-616 (1165)
150 COG0567 SucA 2-oxoglutarate de 98.2 2.6E-05 5.7E-10 90.4 15.5 320 189-564 295-758 (906)
151 PRK13030 2-oxoacid ferredoxin 98.2 4.2E-06 9E-11 100.9 9.2 72 190-271 466-538 (1159)
152 COG1013 PorB Pyruvate:ferredox 98.2 1.5E-05 3.3E-10 83.4 11.9 136 194-372 72-211 (294)
153 KOG0450 2-oxoglutarate dehydro 98.1 0.00013 2.8E-09 81.8 17.7 314 193-564 375-860 (1017)
154 KOG1185 Thiamine pyrophosphate 98.0 0.0003 6.5E-09 76.5 18.2 138 185-369 423-562 (571)
155 PRK13029 2-oxoacid ferredoxin 98.0 2.2E-05 4.7E-10 94.5 9.7 71 191-271 494-565 (1186)
156 PF03894 XFP: D-xylulose 5-pho 97.6 0.0023 5E-08 61.6 15.4 143 405-547 2-177 (179)
157 cd03377 TPP_PFOR_PNO Thiamine 97.5 0.00045 9.8E-09 73.9 10.3 115 214-367 151-267 (365)
158 TIGR03297 Ppyr-DeCO2ase phosph 97.4 0.12 2.6E-06 56.0 27.5 209 322-559 108-334 (361)
159 COG1165 MenD 2-succinyl-6-hydr 97.2 0.012 2.5E-07 65.8 16.6 122 197-370 427-549 (566)
160 cd07034 TPP_PYR_PFOR_IOR-alpha 97.0 0.019 4.1E-07 54.3 14.6 114 442-559 41-159 (160)
161 TIGR03336 IOR_alpha indolepyru 96.9 0.025 5.5E-07 65.1 16.7 112 444-560 47-163 (595)
162 COG3960 Glyoxylate carboligase 96.8 0.0018 4E-08 67.5 6.0 140 188-368 415-557 (592)
163 PRK07119 2-ketoisovalerate fer 96.8 0.015 3.3E-07 62.7 13.2 120 438-560 44-171 (352)
164 TIGR02176 pyruv_ox_red pyruvat 96.7 0.0052 1.1E-07 75.6 9.4 113 215-367 952-1067(1165)
165 PF01855 POR_N: Pyruvate flavo 96.5 0.0074 1.6E-07 61.2 7.7 117 445-563 38-157 (230)
166 PRK08659 2-oxoglutarate ferred 96.4 0.046 9.9E-07 59.5 13.2 116 442-560 48-171 (376)
167 cd07035 TPP_PYR_POX_like Pyrim 96.2 0.036 7.8E-07 52.0 9.9 111 448-560 39-155 (155)
168 PRK08366 vorA 2-ketoisovalerat 95.9 0.14 2.9E-06 56.1 14.0 107 449-559 55-165 (390)
169 PRK09627 oorA 2-oxoglutarate-a 95.7 0.061 1.3E-06 58.5 10.4 113 444-560 49-170 (375)
170 PRK09622 porA pyruvate flavodo 95.5 0.33 7.1E-06 53.5 15.2 139 417-560 26-175 (407)
171 TIGR03710 OAFO_sf 2-oxoacid:ac 95.4 0.076 1.7E-06 60.8 10.2 115 443-559 237-359 (562)
172 PF02776 TPP_enzyme_N: Thiamin 95.3 0.25 5.5E-06 47.4 12.0 116 444-562 41-163 (172)
173 TIGR03845 sulfopyru_alph sulfo 94.9 0.41 8.9E-06 45.7 11.9 110 449-561 40-155 (157)
174 PRK08367 porA pyruvate ferredo 94.2 0.91 2E-05 49.8 14.4 140 417-560 20-169 (394)
175 cd07037 TPP_PYR_MenD Pyrimidin 93.9 0.37 8E-06 46.3 9.4 111 448-559 40-161 (162)
176 cd02004 TPP_BZL_OCoD_HPCL Thia 93.9 0.5 1.1E-05 45.2 10.3 115 440-558 36-169 (172)
177 cd02001 TPP_ComE_PpyrDC Thiami 93.6 1 2.2E-05 42.9 11.7 145 405-559 2-153 (157)
178 PRK11864 2-ketoisovalerate fer 92.5 1.5 3.2E-05 46.3 12.0 113 446-562 67-208 (300)
179 cd02018 TPP_PFOR Thiamine pyro 92.3 5.1 0.00011 40.8 15.3 118 441-559 51-201 (237)
180 cd07039 TPP_PYR_POX Pyrimidine 91.8 1.7 3.8E-05 41.6 10.8 113 447-561 42-159 (164)
181 PRK11866 2-oxoacid ferredoxin 91.2 3.3 7.1E-05 43.4 12.8 152 401-560 16-191 (279)
182 TIGR02177 PorB_KorB 2-oxoacid: 91.1 3.5 7.6E-05 43.3 12.9 148 402-560 11-185 (287)
183 PRK11865 pyruvate ferredoxin o 91.1 4.9 0.00011 42.5 14.0 106 453-560 72-210 (299)
184 cd03376 TPP_PFOR_porB_like Thi 91.0 6.2 0.00014 40.1 14.4 91 467-560 80-199 (235)
185 cd02009 TPP_SHCHC_synthase Thi 90.6 3.4 7.4E-05 39.8 11.5 115 440-558 39-172 (175)
186 cd02014 TPP_POX Thiamine pyrop 90.6 7.5 0.00016 37.4 13.9 119 437-559 36-171 (178)
187 cd02010 TPP_ALS Thiamine pyrop 90.5 7.5 0.00016 37.6 13.9 117 440-560 36-169 (177)
188 PRK07092 benzoylformate decarb 90.5 3.4 7.4E-05 46.9 13.3 116 444-562 50-172 (530)
189 cd03372 TPP_ComE Thiamine pyro 90.4 4.7 0.0001 39.1 12.4 142 405-559 2-153 (179)
190 TIGR03846 sulfopy_beta sulfopy 90.3 5.2 0.00011 38.9 12.6 144 405-559 2-154 (181)
191 COG4231 Indolepyruvate ferredo 90.2 1.7 3.7E-05 49.7 10.1 111 443-561 58-176 (640)
192 KOG0523 Transketolase [Carbohy 90.0 0.25 5.5E-06 55.7 3.4 63 314-377 230-292 (632)
193 PRK07710 acetolactate synthase 89.9 3.7 7.9E-05 47.1 13.0 118 442-562 53-176 (571)
194 PRK07979 acetolactate synthase 89.4 2.5 5.4E-05 48.5 11.1 113 449-563 48-166 (574)
195 cd02015 TPP_AHAS Thiamine pyro 89.3 3.8 8.3E-05 39.8 10.8 116 440-559 38-172 (186)
196 TIGR02418 acolac_catab acetola 89.2 1.9 4.2E-05 49.0 9.9 116 444-562 38-159 (539)
197 PRK07525 sulfoacetaldehyde ace 88.4 7.8 0.00017 44.7 14.3 114 448-563 48-166 (588)
198 cd07033 TPP_PYR_DXS_TK_like Py 88.3 5.6 0.00012 37.6 10.9 60 188-255 41-102 (156)
199 PRK05778 2-oxoglutarate ferred 88.0 8.1 0.00018 40.9 12.9 147 401-558 27-200 (301)
200 TIGR00118 acolac_lg acetolacta 87.9 4 8.6E-05 46.7 11.4 113 448-562 44-162 (558)
201 COG3958 Transketolase, C-termi 87.7 3.4 7.3E-05 43.3 9.5 67 177-256 46-114 (312)
202 PRK08155 acetolactate synthase 87.2 6.7 0.00014 44.9 12.7 116 444-562 53-174 (564)
203 PRK08617 acetolactate synthase 87.2 5.9 0.00013 45.2 12.2 113 448-562 47-165 (552)
204 PLN02470 acetolactate synthase 86.9 11 0.00023 43.5 14.2 155 401-562 13-174 (585)
205 PRK06965 acetolactate synthase 86.7 16 0.00034 42.2 15.4 153 401-562 21-182 (587)
206 PRK09107 acetolactate synthase 86.5 14 0.0003 42.7 14.9 116 444-562 51-172 (595)
207 PRK08611 pyruvate oxidase; Pro 86.2 11 0.00024 43.3 13.8 116 444-562 45-165 (576)
208 PRK08978 acetolactate synthase 86.1 4.5 9.7E-05 46.2 10.5 113 448-562 43-161 (548)
209 COG0674 PorA Pyruvate:ferredox 86.0 5.7 0.00012 43.2 10.6 107 450-558 54-163 (365)
210 PRK06163 hypothetical protein; 85.7 21 0.00045 35.5 13.8 147 405-559 16-171 (202)
211 PRK08199 thiamine pyrophosphat 85.7 5.2 0.00011 45.8 10.8 113 448-563 51-170 (557)
212 PRK11869 2-oxoacid ferredoxin 85.7 12 0.00027 39.1 12.6 152 400-559 16-191 (280)
213 PRK05858 hypothetical protein; 85.7 6.4 0.00014 44.9 11.5 113 448-562 47-165 (542)
214 PRK07282 acetolactate synthase 85.6 5.4 0.00012 45.7 10.9 116 444-562 50-171 (566)
215 PRK06112 acetolactate synthase 85.5 3.4 7.5E-05 47.4 9.3 155 399-562 12-172 (578)
216 PRK06456 acetolactate synthase 85.3 5.8 0.00013 45.5 10.9 112 447-562 47-166 (572)
217 TIGR02176 pyruv_ox_red pyruvat 84.8 9.5 0.00021 47.7 13.0 108 450-559 58-168 (1165)
218 cd06586 TPP_enzyme_PYR Pyrimid 84.8 6.6 0.00014 36.2 9.3 52 195-254 45-97 (154)
219 cd07038 TPP_PYR_PDC_IPDC_like 84.6 9.6 0.00021 36.3 10.4 116 442-560 34-162 (162)
220 cd02002 TPP_BFDC Thiamine pyro 84.6 21 0.00045 34.1 12.9 115 440-558 38-176 (178)
221 PRK11867 2-oxoglutarate ferred 84.5 15 0.00032 38.6 12.6 149 401-560 26-201 (286)
222 cd02003 TPP_IolD Thiamine pyro 84.5 16 0.00035 36.1 12.4 115 440-558 36-181 (205)
223 TIGR03457 sulphoacet_xsc sulfo 84.4 9 0.0002 44.1 12.0 114 448-563 44-162 (579)
224 PRK06457 pyruvate dehydrogenas 84.2 5.5 0.00012 45.5 10.1 114 447-562 43-161 (549)
225 PRK07789 acetolactate synthase 84.0 8.2 0.00018 44.8 11.5 116 444-562 71-192 (612)
226 PRK09628 oorB 2-oxoglutarate-a 83.6 26 0.00057 36.6 13.9 147 405-560 29-200 (277)
227 PRK06466 acetolactate synthase 83.5 5.5 0.00012 45.8 9.7 113 448-562 47-165 (574)
228 TIGR01504 glyox_carbo_lig glyo 83.5 10 0.00022 43.8 12.0 113 449-563 47-166 (588)
229 TIGR03845 sulfopyru_alph sulfo 83.4 18 0.00039 34.5 11.7 56 191-254 40-96 (157)
230 PRK07418 acetolactate synthase 83.3 11 0.00025 43.6 12.3 116 444-562 62-183 (616)
231 cd01460 vWA_midasin VWA_Midasi 83.3 18 0.0004 37.6 12.5 63 191-253 134-205 (266)
232 cd07036 TPP_PYR_E1-PDHc-beta_l 83.1 12 0.00026 36.0 10.5 30 329-363 135-164 (167)
233 cd03375 TPP_OGFOR Thiamine pyr 83.1 33 0.00071 33.6 13.8 102 456-560 57-183 (193)
234 PRK07524 hypothetical protein; 83.1 11 0.00025 42.7 12.0 113 448-562 44-165 (535)
235 PRK06725 acetolactate synthase 82.8 8.8 0.00019 44.1 11.0 117 444-563 54-176 (570)
236 PRK08322 acetolactate synthase 82.7 7.8 0.00017 44.1 10.5 113 447-563 42-162 (547)
237 PRK08527 acetolactate synthase 82.7 8.6 0.00019 44.1 10.9 114 447-562 45-164 (563)
238 cd02006 TPP_Gcl Thiamine pyrop 82.3 4.7 0.0001 39.8 7.5 147 407-559 13-192 (202)
239 PRK07064 hypothetical protein; 82.1 10 0.00023 43.1 11.3 114 447-562 45-167 (544)
240 PRK07586 hypothetical protein; 81.7 9.4 0.0002 43.1 10.6 114 448-563 44-163 (514)
241 cd02013 TPP_Xsc_like Thiamine 81.6 11 0.00024 37.0 9.8 116 440-559 41-177 (196)
242 COG4032 Predicted thiamine-pyr 81.6 2.2 4.7E-05 40.0 4.3 118 438-559 37-162 (172)
243 PRK06276 acetolactate synthase 81.4 9.5 0.00021 44.0 10.6 116 444-562 40-161 (586)
244 PRK11269 glyoxylate carboligas 81.1 35 0.00075 39.4 15.1 116 444-562 44-166 (591)
245 TIGR02720 pyruv_oxi_spxB pyruv 80.8 7.1 0.00015 44.9 9.3 112 448-562 43-160 (575)
246 PRK06048 acetolactate synthase 80.7 11 0.00024 43.1 10.9 114 444-562 47-168 (561)
247 PRK07449 2-succinyl-5-enolpyru 80.6 5.5 0.00012 45.6 8.4 114 448-562 52-175 (568)
248 PRK08266 hypothetical protein; 80.4 8.1 0.00018 44.0 9.6 113 448-562 48-169 (542)
249 PLN02683 pyruvate dehydrogenas 79.8 22 0.00049 38.5 12.2 59 188-255 76-145 (356)
250 PRK06882 acetolactate synthase 79.5 14 0.00031 42.3 11.3 116 444-562 44-165 (574)
251 TIGR00204 dxs 1-deoxy-D-xylulo 79.3 17 0.00037 42.3 11.8 60 188-255 354-415 (617)
252 PRK08979 acetolactate synthase 79.2 11 0.00024 43.3 10.2 116 444-562 44-165 (572)
253 cd03371 TPP_PpyrDC Thiamine py 78.8 46 0.001 32.5 13.1 114 441-559 40-161 (188)
254 TIGR03254 oxalate_oxc oxalyl-C 78.8 11 0.00025 42.9 10.2 114 447-562 44-165 (554)
255 PTZ00089 transketolase; Provis 78.8 17 0.00037 42.6 11.7 68 188-265 405-473 (661)
256 cd02012 TPP_TK Thiamine pyroph 78.7 19 0.00042 36.8 10.8 101 456-559 111-225 (255)
257 PRK09124 pyruvate dehydrogenas 78.5 14 0.00031 42.4 10.9 111 449-562 47-163 (574)
258 PRK12474 hypothetical protein; 77.8 21 0.00046 40.4 11.9 113 448-562 48-166 (518)
259 TIGR00232 tktlase_bact transke 77.6 21 0.00046 41.9 12.0 62 188-256 398-460 (653)
260 cd02007 TPP_DXS Thiamine pyrop 77.2 30 0.00065 34.0 11.3 97 456-559 81-188 (195)
261 PF04273 DUF442: Putative phos 76.6 4.7 0.0001 36.2 4.9 43 323-366 51-95 (110)
262 TIGR00173 menD 2-succinyl-5-en 76.2 11 0.00025 41.5 9.0 113 447-562 42-167 (432)
263 PLN02573 pyruvate decarboxylas 76.2 13 0.00029 42.8 9.8 111 448-562 59-183 (578)
264 PF02775 TPP_enzyme_C: Thiamin 75.8 6.4 0.00014 36.8 5.9 112 441-556 17-151 (153)
265 cd00568 TPP_enzymes Thiamine p 75.3 18 0.00039 33.8 8.9 100 455-558 51-166 (168)
266 CHL00099 ilvB acetohydroxyacid 74.9 13 0.00029 42.7 9.4 116 444-562 53-174 (585)
267 cd02005 TPP_PDC_IPDC Thiamine 74.7 34 0.00073 33.2 10.8 117 441-559 39-172 (183)
268 PRK06546 pyruvate dehydrogenas 74.0 21 0.00045 41.2 10.6 111 449-562 47-163 (578)
269 PRK08273 thiamine pyrophosphat 73.6 17 0.00036 42.1 9.7 111 448-562 47-165 (597)
270 PRK09259 putative oxalyl-CoA d 73.4 20 0.00043 41.1 10.3 113 448-562 52-172 (569)
271 PRK13030 2-oxoacid ferredoxin 73.2 13 0.00029 46.2 9.0 153 400-559 19-201 (1159)
272 cd07035 TPP_PYR_POX_like Pyrim 72.2 56 0.0012 30.3 11.3 57 191-254 40-97 (155)
273 PRK06154 hypothetical protein; 72.1 66 0.0014 37.0 14.1 148 407-559 386-553 (565)
274 PRK08327 acetolactate synthase 71.8 20 0.00042 41.3 9.7 116 444-562 52-182 (569)
275 PRK12571 1-deoxy-D-xylulose-5- 70.5 45 0.00099 39.1 12.4 59 188-254 363-423 (641)
276 PRK12753 transketolase; Review 69.5 43 0.00093 39.4 11.9 68 188-265 404-472 (663)
277 TIGR03394 indol_phenyl_DC indo 69.3 84 0.0018 35.9 14.0 117 444-563 40-167 (535)
278 PLN02225 1-deoxy-D-xylulose-5- 69.0 43 0.00092 39.6 11.6 59 188-254 425-485 (701)
279 PLN02980 2-oxoglutarate decarb 67.8 58 0.0013 42.5 13.6 113 447-560 343-466 (1655)
280 cd02008 TPP_IOR_alpha Thiamine 67.2 39 0.00085 32.5 9.4 99 457-558 58-174 (178)
281 PF02779 Transket_pyr: Transke 66.2 65 0.0014 31.0 10.7 38 325-365 133-171 (178)
282 PLN02790 transketolase 65.7 50 0.0011 38.8 11.5 68 188-265 394-463 (654)
283 PRK11892 pyruvate dehydrogenas 65.4 44 0.00095 37.6 10.4 59 188-254 191-260 (464)
284 PLN02582 1-deoxy-D-xylulose-5- 61.7 78 0.0017 37.4 12.0 60 188-255 400-461 (677)
285 cd07037 TPP_PYR_MenD Pyrimidin 61.5 65 0.0014 30.8 9.5 52 196-253 46-97 (162)
286 PRK09212 pyruvate dehydrogenas 61.3 84 0.0018 33.6 11.3 31 329-364 142-172 (327)
287 KOG1145 Mitochondrial translat 61.1 1.2E+02 0.0025 35.0 12.4 41 212-253 224-264 (683)
288 PLN02234 1-deoxy-D-xylulose-5- 59.8 74 0.0016 37.3 11.3 60 188-255 401-462 (641)
289 KOG1185 Thiamine pyrophosphate 59.7 66 0.0014 36.3 10.1 119 436-558 414-557 (571)
290 PRK12315 1-deoxy-D-xylulose-5- 58.2 55 0.0012 37.9 9.9 108 446-558 110-240 (581)
291 PRK12754 transketolase; Review 58.0 1.1E+02 0.0023 36.2 12.3 68 188-265 404-472 (663)
292 COG0028 IlvB Thiamine pyrophos 57.1 90 0.002 35.9 11.3 114 448-563 44-163 (550)
293 PF02776 TPP_enzyme_N: Thiamin 56.1 1.3E+02 0.0028 28.6 10.7 56 192-255 46-103 (172)
294 TIGR03393 indolpyr_decarb indo 54.9 51 0.0011 37.5 8.9 109 447-563 43-168 (539)
295 PRK09193 indolepyruvate ferred 54.9 58 0.0013 40.7 9.7 155 400-560 27-210 (1165)
296 TIGR03181 PDH_E1_alph_x pyruva 54.5 57 0.0012 35.1 8.7 88 467-558 144-243 (341)
297 PRK05444 1-deoxy-D-xylulose-5- 53.2 77 0.0017 36.6 10.1 108 446-558 114-239 (580)
298 COG3453 Uncharacterized protei 51.0 21 0.00045 32.7 3.9 41 324-366 53-96 (130)
299 cd02000 TPP_E1_PDC_ADC_BCADC T 50.3 68 0.0015 33.6 8.3 88 468-558 127-225 (293)
300 PRK05899 transketolase; Review 49.8 1.5E+02 0.0032 34.6 11.8 88 468-559 152-246 (624)
301 CHL00144 odpB pyruvate dehydro 49.6 1.6E+02 0.0035 31.5 11.1 31 328-363 141-171 (327)
302 smart00861 Transket_pyr Transk 48.0 2.2E+02 0.0047 26.8 10.8 59 188-254 51-110 (168)
303 cd07039 TPP_PYR_POX Pyrimidine 46.5 2.6E+02 0.0057 26.5 12.0 49 199-253 52-100 (164)
304 COG1071 AcoA Pyruvate/2-oxoglu 46.1 1E+02 0.0022 33.6 8.8 104 454-558 144-258 (358)
305 cd07034 TPP_PYR_PFOR_IOR-alpha 44.2 1.8E+02 0.0039 27.0 9.5 54 193-254 49-102 (160)
306 CHL00149 odpA pyruvate dehydro 38.4 1.3E+02 0.0027 32.5 8.2 89 467-558 157-256 (341)
307 PTZ00182 3-methyl-2-oxobutanat 38.1 3.3E+02 0.0072 29.5 11.4 30 329-363 173-202 (355)
308 PRK13029 2-oxoacid ferredoxin 37.1 58 0.0013 40.7 6.0 112 444-560 86-213 (1186)
309 COG1165 MenD 2-succinyl-6-hydr 37.0 2.6E+02 0.0057 32.1 10.5 150 403-559 10-173 (566)
310 cd07038 TPP_PYR_PDC_IPDC_like 36.6 2.7E+02 0.0059 26.3 9.5 56 190-254 40-97 (162)
311 COG0021 TktA Transketolase [Ca 35.4 2.7E+02 0.0058 32.7 10.4 80 230-365 440-519 (663)
312 PRK07119 2-ketoisovalerate fer 33.2 3.5E+02 0.0076 29.2 10.7 48 196-251 59-106 (352)
313 PLN02269 Pyruvate dehydrogenas 29.0 2E+02 0.0044 31.2 8.0 75 480-558 176-256 (362)
314 TIGR03182 PDH_E1_alph_y pyruva 28.7 3.1E+02 0.0067 29.1 9.2 88 468-558 133-231 (315)
315 TIGR01244 conserved hypothetic 27.5 1.2E+02 0.0025 28.0 5.1 43 325-368 53-97 (135)
316 PF10996 Beta-Casp: Beta-Casp 26.8 85 0.0018 27.9 4.0 38 215-252 80-117 (126)
317 COG0299 PurN Folate-dependent 26.7 81 0.0018 31.4 4.0 44 401-448 61-107 (200)
318 COG1240 ChlD Mg-chelatase subu 24.0 6.9E+02 0.015 26.0 10.2 50 193-242 155-209 (261)
319 PLN02374 pyruvate dehydrogenas 23.0 2.7E+02 0.0059 31.1 7.7 86 468-558 224-322 (433)
320 PF07498 Rho_N: Rho terminatio 22.6 90 0.0019 23.0 2.7 17 90-106 1-17 (43)
321 KOG0225 Pyruvate dehydrogenase 22.0 3E+02 0.0064 29.8 7.2 101 452-558 169-284 (394)
322 PF00676 E1_dh: Dehydrogenase 20.2 2.4E+02 0.0052 29.7 6.4 111 444-558 95-222 (300)
323 PF01565 FAD_binding_4: FAD bi 20.1 1.2E+02 0.0026 27.4 3.6 35 529-564 3-37 (139)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.2e-132 Score=1074.12 Aligned_cols=510 Identities=46% Similarity=0.739 Sum_probs=477.7
Q ss_pred CcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHH
Q 007443 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (603)
Q Consensus 79 ~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~ 158 (603)
+|+|++|++|+|||+|+.+||++||+|||.++|+.|+++|||+||+||+||||+|||||||+|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHh
Q 007443 159 LTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (603)
Q Consensus 159 LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A 238 (603)
||||+++|.++||.+||+|||+|.||+||.|++||+||+||+|+|||.|++++|++++||||||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC
Q 007443 239 G-YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (603)
Q Consensus 239 ~-~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (603)
+ ..+.|+|||+|||+||| ++|+|+++++|+++++++.|+++|+..|++++..|.++.+.+.|+++.+|+++
T Consensus 162 g~~~~~~~iVILNDNeMSI--------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 162 GADLKSNLIVILNDNEMSI--------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred hhccCCCEEEEEeCCCccc--------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 9 55699999999999999 78999999999999999999999999999998888889999999999999988
Q ss_pred CCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhc-ccCCCCCCCC
Q 007443 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQ-QEGASDSNSL 394 (603)
Q Consensus 318 ~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~-~~~~~~~~~~ 394 (603)
.+ ..+||+|||+|+||+||||+++|+.+|+.+|+. ++|++||+.|.|||||++||+++ |||-. +.. ......
T Consensus 234 ~~--~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~--~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~-~~tg~~ 308 (627)
T COG1154 234 VP--GTLFEELGFNYIGPIDGHNLEELIPTLKNAKDL--KGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDP-IETGQS 308 (627)
T ss_pred Cc--hhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCChhhcChhhccCCCCCCc-cccCcc
Confidence 87 589999999999999999999999999999998 89999999999999999999999 66531 110 000011
Q ss_pred CC-CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 395 PF-GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 395 p~-~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
+. .+...||+++|++.|.+++++|+++|.++|+|..++|+..|.++||+||||+||||||+|++|+|||++|++|||.+
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 13567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCc
Q 007443 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P 553 (603)
||+|+||||||+.||+|+|++||+|+.+++|++|+||+|||+++|++|||+||||+|++|+|++|++.||++++..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEeecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 554 ~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+.||+||++........ ...++++||++ |.||.||++|.++..|+.|-
T Consensus 469 ~AiRyPrg~~~~~~~~~-~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~va 520 (627)
T COG1154 469 VAIRYPRGNGVGVILTP-ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVA 520 (627)
T ss_pred eEEEecCCCCCCCCccc-ccccccccceEEEecCCcEEEEecchhhHHHHHHH
Confidence 99999999865432221 14678999997 99999999999999999873
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=4.3e-131 Score=1104.21 Aligned_cols=579 Identities=65% Similarity=1.000 Sum_probs=515.8
Q ss_pred CCCCCCCCcccccccccccccccchhhhhhccccccccccc-ccccCCCCCCcccCcceeeccc-ccCCCccccccCCCC
Q 007443 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEIS-RINLCPSSSSITSSKLVTVSRI-CALPDIDDFFWDKEP 78 (603)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (603)
|-|.++.||.- +++|.-|... -|.|.++|+....+..+ |...+.+.+ .++. .++-.+. ...++.++|++++|+
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (701)
T PLN02225 1 MGSASIGYQFG--ISARFYGNFN-LSSDITVSSLPCKLDVSIKSLFSAPSS-THKE-CSNRARVCCSLPNTDEYCDEKFE 75 (701)
T ss_pred CCccccccccc--ceeeeeeecC-cchhhhhhhcccccccchhhccccccc-cccc-cccccccccCCCccccccCCCCC
Confidence 55778889875 5889888775 46788898888877665 444444333 3322 3211111 124566689899988
Q ss_pred CcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHH-hcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHH
Q 007443 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV-SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHK 157 (603)
Q Consensus 79 ~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v-~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~ 157 (603)
+|+|++|++|+|||+|+.+||++||+|||.+|++.+ +++|||+|||||+||||+|||||||.|+|+||||+|||+|+||
T Consensus 76 ~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HK 155 (701)
T PLN02225 76 TPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHK 155 (701)
T ss_pred CchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhh
Confidence 999999999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHH
Q 007443 158 ILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (603)
Q Consensus 158 ~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~ 237 (603)
+||||++.|++ ||++|++|||+|.||+||.|++||+||+||+|+|||.|+++++++++||+|||||+|++||+|||||+
T Consensus 156 iLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~ 234 (701)
T PLN02225 156 VLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSN 234 (701)
T ss_pred HhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhh
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC
Q 007443 238 AGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (603)
Q Consensus 238 A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (603)
|++.+.|||||+|||+|||.|....|...+||+++++|+++++++.|+++|+..|.+++++++.+.++++++++++|+++
T Consensus 235 ~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 314 (701)
T PLN02225 235 AGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMV 314 (701)
T ss_pred hhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999996654445556699999999999999999999999999999998888888899999999998
Q ss_pred CCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCchhhhcccCCCCCCCCCCC
Q 007443 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFG 397 (603)
Q Consensus 318 ~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~~~g~~~~~~~~~~~~p~~ 397 (603)
.+...++||+|||+|+|||||||+++|+++|+++|+...+||++||++|.||| ++.+|+.. .++
T Consensus 315 ~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk-------d~~tg~~~-~~~-------- 378 (701)
T PLN02225 315 GPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR-------DAETGKNI-MVK-------- 378 (701)
T ss_pred CCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC-------CCCCCCcC-CCC--------
Confidence 76434899999999999999999999999999999872249999999999998 34455521 111
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHh
Q 007443 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (603)
Q Consensus 398 ~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~F 477 (603)
...+|+++|+++|.+++++|++||++++||..++++..|+++||+||||+||||||||++|+|||++|++||+++|++|
T Consensus 379 -~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iystF 457 (701)
T PLN02225 379 -DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAF 457 (701)
T ss_pred -CCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehhH
Confidence 3469999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 007443 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (603)
Q Consensus 478 l~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir 557 (603)
++||||||+||+|++++||+|+++++|++|.||+|||+++|+++||+||||+|++|+|+.|+++|+++|+..+++|+|||
T Consensus 458 lqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR 537 (701)
T PLN02225 458 LQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFR 537 (701)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876678999999
Q ss_pred eecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 558 YPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 558 ~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+||+..........+++++++||++ |+|+||||+|.||+.|+++.
T Consensus 538 ~pRg~~~~~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA 586 (701)
T PLN02225 538 FPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAH 586 (701)
T ss_pred ecccccCCCCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHH
Confidence 9998754321101224788999986 99999999999999999874
No 3
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=4.5e-121 Score=1022.81 Aligned_cols=530 Identities=53% Similarity=0.862 Sum_probs=480.1
Q ss_pred ccccccCCC-----CCCcccCcceeecccccCCCccccccCCCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHH
Q 007443 40 ISRINLCPS-----SSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV 114 (603)
Q Consensus 40 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v 114 (603)
-+-||-||+ .||++|+|++|| |.++.++.++|++++|++|+||+|++|.|||+|+.+||+++|.++|+++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~ 99 (641)
T PLN02234 21 PSYINRNPSLKYLKPSSMSSTKYSKV-RATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNV 99 (641)
T ss_pred hhhhccCCccceecccccccccccee-EEEccCCcccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 356787876 478999999999 99998888899999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCch
Q 007443 115 SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHG 194 (603)
Q Consensus 115 ~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~ 194 (603)
++++||+|++||++||+++|||+|+.|+|+||||+|||+|+||+++||++.|+++|+.||++|||++.|+++|.|++||+
T Consensus 100 ~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGsl 179 (641)
T PLN02234 100 SKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHS 179 (641)
T ss_pred hhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCch
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCcccchhhhh
Q 007443 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSS 273 (603)
Q Consensus 195 G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s~~vg~ls~ 273 (603)
|+|||+|+|||+|+++++++++|||++|||+++||++|||||+|++.++|||+|+|||+++++||+. +|+++++|++++
T Consensus 180 g~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~ 259 (641)
T PLN02234 180 STTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSC 259 (641)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHH
Confidence 9999999999999999999999999999999999999999999998889999999999999888866 999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHh
Q 007443 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (603)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~ 353 (603)
+|+++++++.|.. + +..++||+|||+|+|+|||||+++|.++|+++++
T Consensus 260 ~l~~l~~~~~~~~--~------------------------------~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~ 307 (641)
T PLN02234 260 ALSRLQSNCGMIR--E------------------------------TSSTLFEELGFHYVGPVDGHNIDDLVSILETLKS 307 (641)
T ss_pred HHHHhhccccccc--C------------------------------CHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHh
Confidence 9999988876520 0 1146899999999999999999999999999987
Q ss_pred cCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Q 007443 354 LGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD 431 (603)
Q Consensus 354 ~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~~~~~p~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~ 431 (603)
...++|++||++|+|||||+++|+++ ||+...-+.............++|+++|+++|.+++++||+||++++||+++
T Consensus 308 ~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~gg 387 (641)
T PLN02234 308 TKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGG 387 (641)
T ss_pred cCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCC
Confidence 63258999999999999999999965 7764311100000000011246999999999999999999999999999998
Q ss_pred cchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCC
Q 007443 432 LSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP 511 (603)
Q Consensus 432 ~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~ 511 (603)
++++.|+++||+||||+|||||||||+|+|||++|++||+++|++|++||||||++++|++++||+++++++|++|.||+
T Consensus 388 t~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~ 467 (641)
T PLN02234 388 TMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGP 467 (641)
T ss_pred cchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCC-CCCccccccccc----CCcE
Q 007443 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPG-YRGIPIEVVTRH----ASCT 586 (603)
Q Consensus 512 tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~-~~~~~~~~Gka~----G~dv 586 (603)
|||+++|+++||+||||+|++|+|+.|+++|+++++..+++|+|||++|+.+....+|. .+++++++||++ |+|+
T Consensus 468 TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~dv 547 (641)
T PLN02234 468 THCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERV 547 (641)
T ss_pred cccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCCE
Confidence 99999999999999999999999999999999998777789999999999874333332 224578999986 9999
Q ss_pred EEEEecHHHHHHHHhh
Q 007443 587 CLIITFEMLLCFLHVL 602 (603)
Q Consensus 587 tIIa~G~~v~~al~~~ 602 (603)
|||++|.+|+.|+++.
T Consensus 548 tIva~G~~v~~Al~AA 563 (641)
T PLN02234 548 ALLGYGSAVQRCLEAA 563 (641)
T ss_pred EEEEecHHHHHHHHHH
Confidence 9999999999999874
No 4
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.5e-116 Score=992.23 Aligned_cols=539 Identities=57% Similarity=0.914 Sum_probs=484.6
Q ss_pred ccCCCccccccCCCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCc
Q 007443 64 CALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVD 143 (603)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D 143 (603)
.++.+..+|...++++|+|++|++|++||+|+.++|+++|.+||+.+++++++.|||+|++||++|++++||++|+.|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~D 95 (677)
T PLN02582 16 LSPEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQD 95 (677)
T ss_pred ccccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCC
Confidence 33455556644445688999999999999999999999999999999999998899999999999999999999999999
Q ss_pred eeeecCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcC
Q 007443 144 KILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISN 223 (603)
Q Consensus 144 ~ii~d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGD 223 (603)
+||||+|||+|+|++++||++.|.++|+.||++|||++.|+++|.|++||+|+++|.|+|+|+|+++++++++|||++||
T Consensus 96 r~i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGD 175 (677)
T PLN02582 96 KILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGD 175 (677)
T ss_pred eEEEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccch
Q 007443 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302 (603)
Q Consensus 224 Gal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 302 (603)
|++++|++|||||+|+.++.|+++|||||++++.||.. ++.++++|+++++|.++++++.|.++|+..+.++++++..+
T Consensus 176 G~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (677)
T PLN02582 176 GAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPM 255 (677)
T ss_pred cccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhH
Confidence 99999999999999999999999999999995555544 88899999999999999999999999999999999887666
Q ss_pred hHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--h
Q 007443 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--A 380 (603)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~ 380 (603)
..+..++++..|.++.|....+||+|||+|+|+|||||+++|.++|+++|+...++|++||++|+|||||+++|+++ |
T Consensus 256 ~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~ 335 (677)
T PLN02582 256 HELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKY 335 (677)
T ss_pred HHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhc
Confidence 77778899999988876334799999999999999999999999999999861259999999999999999999998 6
Q ss_pred hhhcccCCCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHH
Q 007443 381 IEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSA 460 (603)
Q Consensus 381 ~g~~~~~~~~~~~~p~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~Aa 460 (603)
||...-+...-...+......+|.++|+++|.+++++|++||++++||++++++..|+++||+||||+||||||||++|+
T Consensus 336 H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~Aa 415 (677)
T PLN02582 336 HGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAA 415 (677)
T ss_pred CCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHH
Confidence 76421110000001111124689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHH
Q 007443 461 GLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540 (603)
Q Consensus 461 GlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~ 540 (603)
|||+.|++||+++|++|++||||||++++|++++||+|+++++|++|.||+|||+++|+++||+||||+|++|+|+.|++
T Consensus 416 GLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~ 495 (677)
T PLN02582 416 GLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELF 495 (677)
T ss_pred HHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEeecCCCccccCCCC-CCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 541 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~-~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+||++|+..+++|+|||+||+......++.. .++++++||++ |+|+||||+|.||+.|+++.
T Consensus 496 ~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa 562 (677)
T PLN02582 496 HMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAA 562 (677)
T ss_pred HHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHH
Confidence 9999998666799999999987432222321 13578899986 89999999999999999874
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.2e-109 Score=937.35 Aligned_cols=507 Identities=44% Similarity=0.692 Sum_probs=462.9
Q ss_pred ccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhc
Q 007443 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (603)
Q Consensus 82 l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtG 161 (603)
|++|++|+|||+|+.+||+++|.+||+++++++++++||+|++||++|++++||++|+.|||+||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhc
Q 007443 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (603)
Q Consensus 162 r~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 241 (603)
|.+.|.+||+.|+++|||++.|+++|.|++||+|+++|.|+|||+|.++++++.+|+|++|||+++||++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCCh
Q 007443 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (603)
Q Consensus 242 ~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (603)
+.|+++|+|||++++ +.++++++.+|++++.++.|.++++..+++++..+.-...+++++++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~~i--------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-- 230 (617)
T TIGR00204 161 KTDMIVILNDNEMSI--------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP-- 230 (617)
T ss_pred CCCEEEEEECCCccc--------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--
Confidence 988999999999998 6789999999999999999999999999988755422223678888899988877
Q ss_pred hhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCCCCCCC-CCC
Q 007443 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASDSNSLP-FGN 398 (603)
Q Consensus 322 ~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~~~~~p-~~~ 398 (603)
.++||+|||+|+++|||||+++|.++|+++++. ++|++||++|+||+||+++|+++ ||+....+.. ....+ ...
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~--~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~-~~~~~~~~~ 307 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKKL--KGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLS-TGCLPKSKS 307 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCchhhcChhhccCCCCCChh-hCCcCCCCC
Confidence 589999999999999999999999999999986 78999999999999999999876 7765321110 00111 112
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhH
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFL 478 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl 478 (603)
...+|+++|+++|.+++++|++||++++||.+++++.+|+++||+||||+|||||+|||+|+|||+.|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 34689999999999999999999999999987888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 479 QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 479 ~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
+||||||++++|++++||+++++++|++|.+|+|||+++|+++||+||||+|++|+|+.|++++|++++..+++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865569999999
Q ss_pred ecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 559 PRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 559 ~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+|+.+.....+ ...+.+++||++ |+|+|||++|.||+.|+++.
T Consensus 468 ~r~~~~~~~~~-~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa 514 (617)
T TIGR00204 468 PRGNAVGVELT-PEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVA 514 (617)
T ss_pred ccCCcCCcccC-CccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHH
Confidence 99876432222 224788999986 99999999999999999873
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.8e-107 Score=924.58 Aligned_cols=514 Identities=47% Similarity=0.744 Sum_probs=471.6
Q ss_pred CCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHH
Q 007443 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (603)
Q Consensus 76 ~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~ 155 (603)
+|.+++|++|++|+|||+|+.++|+++|.+||+++++++++.+||+|++||++|++++||++|+.|+|+||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 46678999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred HHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH
Q 007443 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (603)
Q Consensus 156 ~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl 235 (603)
|++|+||++.|.+||+.|+++|||++.|++++.+..||.+++++.|+|+|+|.++.+++++|||++|||++++|++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhc
Q 007443 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (603)
Q Consensus 236 n~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (603)
++|+.++.|+++|+|||++++ +.++|+++++|+++..++.|+++|+..+++++.+++++...+.++++.+|.
T Consensus 163 ~~a~~~~~~li~I~dnN~~~i--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMSI--------APPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred HHHHHhCCCEEEEEECCCeee--------cCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 999999999999999999998 568999999999999999999999999999999988888888899999998
Q ss_pred cCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCCCCC
Q 007443 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASDSNS 393 (603)
Q Consensus 316 ~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~~~~ 393 (603)
++.+ .++||+|||+|+++|||||+++|.++|+++++. .++|++||++|+|||||+++|+++ |||...-... ...
T Consensus 235 ~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~-~~~ 310 (641)
T PRK12571 235 MIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVV-TGL 310 (641)
T ss_pred ccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCC-CCc
Confidence 8776 689999999999999999999999999999873 278999999999999999999865 7875321100 000
Q ss_pred CCC-CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEE
Q 007443 394 LPF-GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCI 472 (603)
Q Consensus 394 ~p~-~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~ 472 (603)
... .....+|+++|+++|.+++++|++|+++++|+.+++++..|+++||+||||+||+||+|+|+|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 000 1124589999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCC
Q 007443 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552 (603)
Q Consensus 473 ~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 552 (603)
+|++|++||+|||++++|++++||+++++++|++|.||+|||+++|+++||+||||+|++|+|+.|++++|++|+..+++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999765689
Q ss_pred cEEEEeecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 553 PVCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 553 P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
|+|||++|+.++...++. .++.+++||+. |+|+||||||.||+.|+++.
T Consensus 471 P~~ir~~r~~~~~~~~~~-~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa 523 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA-EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAA 523 (641)
T ss_pred cEEEEEecCcCCccccCC-CCccccCceeEEEecCCCEEEEEecHHHHHHHHHH
Confidence 999999999764333332 24678899986 89999999999999999974
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.2e-100 Score=861.48 Aligned_cols=471 Identities=31% Similarity=0.537 Sum_probs=420.6
Q ss_pred CccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHh
Q 007443 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (603)
Q Consensus 81 ~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~Lt 160 (603)
+|+.|++|.|||+|+.+||++||++||.++++.++++|||++++||++|+++|||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhh
Q 007443 161 GRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (603)
Q Consensus 161 Gr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~ 240 (603)
||...+.+.|++|+++||+++.|++++.+.+||.|+++|+|+|||+|+++++++++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCC
Q 007443 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (603)
Q Consensus 241 ~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (603)
+++|+|+|||||+|++ ++++++++.++.+++.++ ..+
T Consensus 162 ~k~~li~Ii~dN~~si--------~~~~~~~~~~l~~~~~~~-----------------------------------~~~ 198 (581)
T PRK12315 162 LKSNLIIIVNDNQMSI--------AENHGGLYKNLKELRDTN-----------------------------------GQS 198 (581)
T ss_pred hCCCEEEEEECCCCcC--------CCCCchhhhhhhhhhhcc-----------------------------------ccc
Confidence 9999999999999998 567877766665432211 001
Q ss_pred hhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhh-cccCCCCCCCCCCC
Q 007443 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEK-QQEGASDSNSLPFG 397 (603)
Q Consensus 321 ~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~-~~~~~~~~~~~p~~ 397 (603)
..++|++|||+|++++||||++++.++++++++. +||++||++|+||+||+++++++ ||+. ++.... .....+
T Consensus 199 ~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~--~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~--~~~~~~ 274 (581)
T PRK12315 199 ENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDI--DHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLET--GQSKVP 274 (581)
T ss_pred HHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhC--CCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCccc--CcccCC
Confidence 2467999999999766999999999999999886 89999999999999999876655 7763 111100 000001
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHh
Q 007443 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (603)
Q Consensus 398 ~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~F 477 (603)
....+|+++|+++|.+++++|++++++++|+.+++++..|+++||+||||+|||||||+++|+|||+.|++||+.+|++|
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 275 ASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 12568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 007443 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (603)
Q Consensus 478 l~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir 557 (603)
++||||||++++|++++||+++++++|+++ ||+|||+++|+++||+||||+|++|+|+.|++.++++|+..+++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999976557999999
Q ss_pred eecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 558 YPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 558 ~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
++|+.++... .. ...++.||+. |+|+||||+|.+|+.||++.
T Consensus 434 ~~r~~~~~~~--~~-~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa 479 (581)
T PRK12315 434 VPEHGVESGP--TV-DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVA 479 (581)
T ss_pred EcCCccCCCC--CC-ccCcccceEEEEecCCCEEEEEEchHHHHHHHHH
Confidence 9999865321 11 2234456764 89999999999999999873
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.7e-96 Score=828.67 Aligned_cols=474 Identities=49% Similarity=0.758 Sum_probs=421.1
Q ss_pred CCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHH
Q 007443 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (603)
Q Consensus 76 ~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~ 155 (603)
++.+|+|++|++|.|||+|+.++|+++|.++|..+++|+.+++||+|++||++|++++||++|+.+||+||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 46789999999999999999999999999999999999998899999999999999999999998999999999999999
Q ss_pred HHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHc-CCCCeEEEEEcCCccccchHHHH
Q 007443 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-GKRECIVTVISNGTTMAGQAYEA 234 (603)
Q Consensus 156 ~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~-g~~~~Vv~viGDGal~eG~~~EA 234 (603)
|++++|+.+.+.+||+.++++|||++.+++++.+++||+|+++|.|+|+|+|.+++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999899999999999999999999999999988 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhh
Q 007443 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (603)
Q Consensus 235 ln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (603)
+++|++++.|+++|+|||+++++ .+++.+..++. .
T Consensus 161 l~~A~~~~~nli~IvdnN~~~i~--------~~~~~~~~~~~-------------------------------~------ 195 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMSIS--------PNVGALSNYLA-------------------------------R------ 195 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCcCC--------Ccchhhhhhhc-------------------------------c------
Confidence 99999999999999999999873 33332110000 0
Q ss_pred ccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCC-C
Q 007443 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASD-S 391 (603)
Q Consensus 315 ~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~-~ 391 (603)
.+..++|++|||++++++||||++++.++++++++. ++|++|+++|+||+||+++|+++ ||+........ .
T Consensus 196 ----~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~--~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~ 269 (580)
T PRK05444 196 ----LRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDL--KGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGE 269 (580)
T ss_pred ----ccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhC--CCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCC
Confidence 011467899999999778999999999999999876 79999999999999999998754 78654321110 0
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEE
Q 007443 392 NSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC 471 (603)
Q Consensus 392 ~~~p~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~ 471 (603)
...+.+....+|+++|+++|.+++++|++++++++|+.++.++..|+++||+||||+||+||+|+|+|+|||++|++||+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~ 349 (580)
T PRK05444 270 QPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVV 349 (580)
T ss_pred ccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEE
Confidence 00010112368999999999999999999999999998777888899999999999999999999999999999999999
Q ss_pred EecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCC
Q 007443 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (603)
Q Consensus 472 ~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 551 (603)
++|++|++|++|||++++|++++||+++++++|++|.+|+|||+++|+++||+||||+|++|+|+.|+++++++++..++
T Consensus 350 ~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~ 429 (580)
T PRK05444 350 AIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDD 429 (580)
T ss_pred EeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999986668
Q ss_pred CcEEEEeecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 552 RPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 552 ~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+|+|||++|+.++....+ +.+.+++||++ |+|+||||+|.+|+.||++.
T Consensus 430 ~P~~ir~~r~~~~~~~~~--~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa 482 (580)
T PRK05444 430 GPIAIRYPRGNGVGVELP--ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAA 482 (580)
T ss_pred CcEEEEecCCCCCCCCCC--CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHH
Confidence 999999999986432222 25778999985 89999999999999999974
No 9
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=4.3e-84 Score=736.41 Aligned_cols=446 Identities=19% Similarity=0.242 Sum_probs=375.8
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-h--ccC------CCceeeecCCchH---HHHHHHhcch-
Q 007443 98 ELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-V--FHA------PVDKILWDVGEQT---YAHKILTGRR- 163 (603)
Q Consensus 98 ~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-v--f~~------p~D~ii~d~GH~a---Y~~~~LtGr~- 163 (603)
..+++|+++|..+++++. .++||+|++||++|++++||+ + |+. +||+||||+||++ |+|++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 357789999999999996 799999999999999999997 5 442 5899999999999 9999999984
Q ss_pred --hHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCccccch
Q 007443 164 --SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQ 230 (603)
Q Consensus 164 --~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal~eG~ 230 (603)
+.+.+||+.++ ++|||++.+++++.+++||+|+|+|.|+|||+|+|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 78889999875 579999989999999999999999999999999998754 78999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 231 ~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
+|||+|+|+.++ +|||+|+|||+++|+ .++... .
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~~i~--------~~~~~~--------------------------~----------- 199 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKITID--------GNTDLS--------------------------F----------- 199 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCcccc--------cCcccc--------------------------c-----------
Confidence 999999999999 689999999999983 232100 0
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecCCC-CHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG 387 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vDGh-D~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~ 387 (603)
..+...+|++|||+|++++||| |+++|+++++++++.. ++|++||++|+||+|+ ..|+.. +||..+..
T Consensus 200 --------~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~-~~P~~I~~~T~kG~G~-~~e~~~~~H~~~~~~ 269 (661)
T PTZ00089 200 --------TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSK-GKPKLIIVKTTIGYGS-SKAGTEKVHGAPLGD 269 (661)
T ss_pred --------CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC-CCcEEEEEEeeecCCC-CcCCCCCccCCCCCH
Confidence 0112467999999999655999 9999999999998752 6899999999999995 444433 55532100
Q ss_pred --------------C-------------------CC----------------------------CCCCC-----------
Q 007443 388 --------------A-------------------SD----------------------------SNSLP----------- 395 (603)
Q Consensus 388 --------------~-------------------~~----------------------------~~~~p----------- 395 (603)
. .. ...+|
T Consensus 270 ~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (661)
T PTZ00089 270 EDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYT 349 (661)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhhhc
Confidence 0 00 00011
Q ss_pred CCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhHhCC-CCeeecchhhHHHHHHHHHHhc-CCCe
Q 007443 396 FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFP-ERYFDVGMAEQHAVTFSAGLAC-GGLK 468 (603)
Q Consensus 396 ~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~~fp-~R~id~GIaE~~~vg~AaGlA~-~G~~ 468 (603)
..++..++|++++++|.++++.+++++++++|+..++.+ ..|+++|| +||||+|||||||+++|+|||+ .|++
T Consensus 350 ~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~ 429 (661)
T PTZ00089 350 TNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFI 429 (661)
T ss_pred ccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCe
Confidence 012346789999999999999999999999999877754 37989999 8999999999999999999999 8999
Q ss_pred EEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Q 007443 469 PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (603)
Q Consensus 469 P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 547 (603)
||+.+|++|++|+|||||+. |++++||+|+++++|+ +|+||+|||++||+++||+||||+|++|+|+.|+..+|++++
T Consensus 430 P~~~tf~~Fl~Ra~dqir~~-al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al 508 (661)
T PTZ00089 430 PFGATFLNFYGYALGAVRLA-ALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALAL 508 (661)
T ss_pred EEEEehHHHHHHHHHHHHHH-HhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999876 9999999999999998 699999999999999999999999999999999999999998
Q ss_pred hCCCCcEEEEeecCCCccccCCCCCCccccccccc-------CCcEEEEEecHHHHHHHHhh
Q 007443 548 SIDDRPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH-------ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 548 ~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~-------G~dvtIIa~G~~v~~al~~~ 602 (603)
...++|+|||++|+..+.. +. ....+..+++. +.|++||++|.+|..|+++.
T Consensus 509 ~~~~gP~~irl~R~~~~~~--~~-~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa 567 (661)
T PTZ00089 509 ANAKTPTILCLSRQNTPPL--PG-SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAA 567 (661)
T ss_pred HcCCCCEEEEecCCCCCCc--CC-CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHH
Confidence 6678999999999976432 11 12233334432 37999999999999999873
No 10
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=4.6e-83 Score=726.89 Aligned_cols=448 Identities=17% Similarity=0.181 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHhhc-c--------CCCceeeecCCchH---HHHHHHhcch---
Q 007443 100 KQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGRR--- 163 (603)
Q Consensus 100 ~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf-~--------~p~D~ii~d~GH~a---Y~~~~LtGr~--- 163 (603)
+++|.+||..+++|+. .++||+|++||++|++.+||+.| + .+||+||||+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 5679999999999998 69999999999999999999743 2 23799999999999 9999999974
Q ss_pred hHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCccccchHH
Q 007443 164 SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQAY 232 (603)
Q Consensus 164 ~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal~eG~~~ 232 (603)
+.|.+||+.++ ++|||+....++.++++|++|+|++.|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 88999999875 689999877888889999999999999999999998753 6899999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH
Q 007443 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (603)
Q Consensus 233 EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (603)
||+|+|+.++ +|||+|+|||+++|+ .+++.. +
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~~i~--------~~~~~~---~------------------------------------ 197 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGISID--------GETEGW---F------------------------------------ 197 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCcCC--------CChhhh---c------------------------------------
Confidence 9999999999 579999999999983 233210 0
Q ss_pred hhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccCC--
Q 007443 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEGA-- 388 (603)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~~-- 388 (603)
..+..++|++|||+++.+|||||+++|+++++++++. .++|++|+++|+||+|++++|+.. +||..+..+
T Consensus 198 ------~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~~~~H~~~l~~~~~ 270 (663)
T PRK12753 198 ------TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGKEESHGAPLGEEEV 270 (663)
T ss_pred ------ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCCCCccCCCCCHHHH
Confidence 0111467999999999669999999999999999864 378999999999999999987765 666322100
Q ss_pred ----------------C----------C-------------------------------CCCCCC---------------
Q 007443 389 ----------------S----------D-------------------------------SNSLPF--------------- 396 (603)
Q Consensus 389 ----------------~----------~-------------------------------~~~~p~--------------- 396 (603)
+ . ...+|.
T Consensus 271 ~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 350 (663)
T PRK12753 271 ALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQA 350 (663)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhc
Confidence 0 0 001121
Q ss_pred CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhHhCCCCeeecchhhHHHHHHHHHHhc-CCCeEE
Q 007443 397 GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPF 470 (603)
Q Consensus 397 ~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~~fp~R~id~GIaE~~~vg~AaGlA~-~G~~P~ 470 (603)
.++++++|++++++|.++++.+|+++++++|+++++.+ ..|+++||+||||+||+||+|+++|+|||+ .|++||
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 12356889999999999999999999999999888766 679999999999999999999999999999 899999
Q ss_pred EEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC
Q 007443 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (603)
Q Consensus 471 ~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~ 549 (603)
+++|++|++|++||||+. |++++||+++++++|+ .|+||+|||++||+++||.||||+|++|+|+.|++.++++++..
T Consensus 431 ~~tf~~F~~r~~~qir~~-a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~~ 509 (663)
T PRK12753 431 TATFLMFVEYARNAARMA-ALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIER 509 (663)
T ss_pred EEehHHHHHHHHHHHHHH-HhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHhc
Confidence 999999999999999986 9999999999999999 69999999999999999999999999999999999999999865
Q ss_pred CCCcEEEEeecCCCccccCCCCCCcccccccc-----c-CCcEEEEEecHHHHHHHHhh
Q 007443 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEVVTR-----H-ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 550 ~~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka-----~-G~dvtIIa~G~~v~~al~~~ 602 (603)
.++|+|||++|+..+...-.......+..|+- . +.|++||++|++|+.||++.
T Consensus 510 ~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~~vl~~~~~~~dv~iia~Gs~v~~al~Aa 568 (663)
T PRK12753 510 HNGPTALILSRQNLAQQERTPEQVKNIARGGYILKDSGGKPDLILIATGSEVEITLQAA 568 (663)
T ss_pred CCCCEEEEecCCCCCCCCCcccchhhccCCcEEEeccCCCCCEEEEEeCHHHHHHHHHH
Confidence 68999999999976432100000123444431 1 24999999999999999873
No 11
>PLN02790 transketolase
Probab=100.00 E-value=4.8e-82 Score=718.84 Aligned_cols=438 Identities=18% Similarity=0.218 Sum_probs=371.3
Q ss_pred HHHHHHHHHh-cCCCcccCccchHHHHHHHHhh---ccC------CCceeeecCCchH---HHHHHHhcch----hHhhH
Q 007443 106 IRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FHA------PVDKILWDVGEQT---YAHKILTGRR----SLIHT 168 (603)
Q Consensus 106 iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~v---f~~------p~D~ii~d~GH~a---Y~~~~LtGr~----~~~~~ 168 (603)
||..+++++. +++||+|++||++|++++||+. |+. +||+||||+||++ |+|++++|+. ++|.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 5899999996 7999999999999999999985 552 5899999999999 9999999996 78999
Q ss_pred hhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHc-----CC-----CCeEEEEEcCCccccchHHHHHHH
Q 007443 169 LRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-----GK-----RECIVTVISNGTTMAGQAYEAMSN 237 (603)
Q Consensus 169 ~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~-----g~-----~~~Vv~viGDGal~eG~~~EAln~ 237 (603)
||+.+++ +|||++.+++++.+++||+|+++|.|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999865 599999899999999999999999999999999853 32 689999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc
Q 007443 238 AGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (603)
Q Consensus 238 A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (603)
|+.++ +||++|+|||+++|+ .+++...
T Consensus 161 A~~~~L~nli~i~d~N~~~i~--------~~~~~~~-------------------------------------------- 188 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISID--------GDTEIAF-------------------------------------------- 188 (654)
T ss_pred HHHhCCCCEEEEEecCCcccc--------CCccccc--------------------------------------------
Confidence 99999 679999999999983 3342110
Q ss_pred CCCChhhHHhhcCCeEEeecCC--CCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC------
Q 007443 317 IGPQGSTLFEELGLYYIGPVDG--HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG------ 387 (603)
Q Consensus 317 ~~~~~~~lfea~G~~~ig~vDG--hD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~------ 387 (603)
..+..++|++|||+|+ .||| ||+++|.++++++++. .++|++||++|+||+|++++|+.. +||..+..
T Consensus 189 -~~~~~~~f~a~G~~~~-~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e~~~~~H~~~~~~~~~~~~ 265 (654)
T PLN02790 189 -TEDVDKRYEALGWHTI-WVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKANSYSVHGAALGEKEVDAT 265 (654)
T ss_pred -chhHHHHHHHcCCeEE-EECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccccCCCCcCCCCCCHHHHHHH
Confidence 0011457999999999 5666 8999999999999873 279999999999999999877655 66543210
Q ss_pred --------CC------------C---------------------C-------------CCCCC-----------CCCCcc
Q 007443 388 --------AS------------D---------------------S-------------NSLPF-----------GNYSRT 402 (603)
Q Consensus 388 --------~~------------~---------------------~-------------~~~p~-----------~~~~~s 402 (603)
.+ . . ..+|. .++..+
T Consensus 266 ~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 345 (654)
T PLN02790 266 RKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADA 345 (654)
T ss_pred HHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchH
Confidence 00 0 0 00110 122468
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcc-----hhhhhHh-CCCCeeecchhhHHHHHHHHHHhcC--CCeEEEEec
Q 007443 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEK-FPERYFDVGMAEQHAVTFSAGLACG--GLKPFCIIP 474 (603)
Q Consensus 403 ~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~-----l~~f~~~-fp~R~id~GIaE~~~vg~AaGlA~~--G~~P~~~~~ 474 (603)
+|+++++.|.++.+.+|+++++++|+..++. +..|+++ ||+||||+|||||||+++|+|||+. |++||+++|
T Consensus 346 ~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf 425 (654)
T PLN02790 346 TRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATF 425 (654)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8999999999999999999999999987754 5789888 5999999999999999999999995 699999999
Q ss_pred HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCc
Q 007443 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (603)
Q Consensus 475 ~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P 553 (603)
+.|+.|+++|||+. |++++||+++++|+|+ +|+||+|||++||+++||+||||+|++|+|+.|+..+|++++...++|
T Consensus 426 ~~F~~~~~~~ir~~-al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~gP 504 (654)
T PLN02790 426 FVFTDYMRAAMRLS-ALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKRP 504 (654)
T ss_pred HHHHHHHHHHHHHH-HhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999886 9999999999999988 699999999999999999999999999999999999999998766899
Q ss_pred EEEEeecCCCccccCCCCCCccccccccc---C-----CcEEEEEecHHHHHHHHh
Q 007443 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTRH---A-----SCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 554 ~~ir~~r~~~~~~~~~~~~~~~~~~Gka~---G-----~dvtIIa~G~~v~~al~~ 601 (603)
+|||++|+..+.. +......+++|+.. + .|++||++|.+|+.||++
T Consensus 505 ~~irl~R~~~~~~--~~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~v~~Al~A 558 (654)
T PLN02790 505 TVLALSRQKVPNL--PGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEIAAKA 558 (654)
T ss_pred EEEEecCCCCCCC--CCCcccccccCcEEEEeCCCCCCCCEEEEEcCHHHHHHHHH
Confidence 9999999976422 11112446666532 2 799999999999999987
No 12
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-83 Score=685.20 Aligned_cols=451 Identities=26% Similarity=0.350 Sum_probs=384.8
Q ss_pred CcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc----CC----Cceeeec
Q 007443 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWD 148 (603)
Q Consensus 79 ~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~----~p----~D~ii~d 148 (603)
+|.+++++.+..+++|.+.+ +++++ ..+||+++++|.+++...|+. +++ .| +||||||
T Consensus 2 ~~~~~~~~~~~~~n~lri~s------------i~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls 69 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILS------------IDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLS 69 (632)
T ss_pred CchhhhhhhHHHhhhhhhhh------------HHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEe
Confidence 45566666666666655544 45554 677999999999999988876 343 12 7999999
Q ss_pred CCchH---HHHHHHhc--chhHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC-CCeEEEEE
Q 007443 149 VGEQT---YAHKILTG--RRSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVI 221 (603)
Q Consensus 149 ~GH~a---Y~~~~LtG--r~~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~-~~~Vv~vi 221 (603)
+||++ |+|++|+| +.+++.+|||.++ +.|||. .+++++.++|||+|||||.|+|||+++|++++ +++|+|++
T Consensus 70 ~GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vl 148 (632)
T KOG0523|consen 70 NGHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVL 148 (632)
T ss_pred ccccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEE
Confidence 99999 99999999 7999999999976 467776 57999999999999999999999999999998 99999999
Q ss_pred cCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCcc-CCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccc
Q 007443 222 SNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (603)
Q Consensus 222 GDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~-~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (603)
|||+++||++||||++|++++ +||++|.|+|+.++++ ++ .|+..+|.
T Consensus 149 GDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g-~t~~~~~~dV~------------------------------ 197 (632)
T KOG0523|consen 149 GDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDG-ATSLGFDEDVY------------------------------ 197 (632)
T ss_pred cCchhccchHHHHHhhhhhcccCCEEEEEccccccCCC-CCcccccccHH------------------------------
Confidence 999999999999999999999 8888888888888842 22 23322221
Q ss_pred cchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc
Q 007443 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE 379 (603)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~ 379 (603)
...|++|||+.+ .|||||+++|.+++.+++.. .++|++|.++|.+|+|....+...
T Consensus 198 ----------------------~~r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig~~~ 253 (632)
T KOG0523|consen 198 ----------------------QLRFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIGSES 253 (632)
T ss_pred ----------------------HHHHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCcccccccc
Confidence 234899999999 99999999999999999865 488999999999999999888555
Q ss_pred hhhhcccCC-----------C--------------C--C-------C--------CCCC---CCCCccHHHHHHHHHHHH
Q 007443 380 AIEKQQEGA-----------S--------------D--S-------N--------SLPF---GNYSRTYDDCFIEALVME 414 (603)
Q Consensus 380 ~~g~~~~~~-----------~--------------~--~-------~--------~~p~---~~~~~s~~~a~~~aL~~~ 414 (603)
|||++++.. | . . . .+|. .++.+++|++|.++|.++
T Consensus 254 ~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l 333 (632)
T KOG0523|consen 254 VHGAPLGEDDVERVKSIKGLPVLIFVVPEKVKLYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAAL 333 (632)
T ss_pred ccCCcchhhHHHHHHhhcCCcceeEEeccccccCCCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHH
Confidence 888765320 0 0 0 0 1111 245589999999999999
Q ss_pred HhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCC-eEEEEecHHhHHHHHHHHHHHhhcCC
Q 007443 415 AEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQR 493 (603)
Q Consensus 415 ~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~-~P~~~~~~~Fl~ra~dQi~~~~a~~~ 493 (603)
++.+|+||++++|+..++.++-|+++||+|||++||+||||+++|+|+|+.|. +|||.+|+.|++|||||||++ +..+
T Consensus 334 ~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~ 412 (632)
T KOG0523|consen 334 AEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQ 412 (632)
T ss_pred hhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhcc
Confidence 99999999999999999888888999999999999999999999999999998 999999999999999999997 7888
Q ss_pred CCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCCCC
Q 007443 494 LPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYR 572 (603)
Q Consensus 494 lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~ 572 (603)
.+++++++|+|+ .|+||||||++||+++||+||||+||.|+|+.|+..++..|+..++.|.+++++|++.+... .
T Consensus 413 ~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~----~ 488 (632)
T KOG0523|consen 413 ANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYN----N 488 (632)
T ss_pred CCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccC----C
Confidence 888889999888 69999999999999999999999999999999999999999887777999999999976332 2
Q ss_pred Cccccccccc-----CC-cEEEEEecHHHHHHHHhh
Q 007443 573 GIPIEVVTRH-----AS-CTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 573 ~~~~~~Gka~-----G~-dvtIIa~G~~v~~al~~~ 602 (603)
...+++||++ +. ||++|++|.+|+.||++.
T Consensus 489 ~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA 524 (632)
T KOG0523|consen 489 TEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAA 524 (632)
T ss_pred CchhhhccccEEEecCCCCEEEEeccHHHHHHHHHH
Confidence 3457888886 44 999999999999999974
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1.7e-81 Score=714.17 Aligned_cols=450 Identities=21% Similarity=0.250 Sum_probs=388.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc--------CCCceeeecCCchH---HHHHHHh
Q 007443 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAHKILT 160 (603)
Q Consensus 94 l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~--------~p~D~ii~d~GH~a---Y~~~~Lt 160 (603)
|..++|+++|+++|+.+++++. +++||+|++||++|++++||+ +|+ .++|+||||+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5678999999999999999996 799999999999999999997 554 24899999999999 9999999
Q ss_pred cc---hhHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcc
Q 007443 161 GR---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTT 226 (603)
Q Consensus 161 Gr---~~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal 226 (603)
|+ ++++.++|++++ +++||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 899999999986 699999988899999999999999999999999988776 8899999999999
Q ss_pred ccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHH
Q 007443 227 MAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEW 305 (603)
Q Consensus 227 ~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~ 305 (603)
++|++||||++|+.++ +|+++|+|||+++++ .++..+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~--------~~~~~~---------------------------------- 200 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRISID--------GPTEGW---------------------------------- 200 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCCccc--------cccccc----------------------------------
Confidence 9999999999999999 679999999999873 122100
Q ss_pred HHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhc
Q 007443 306 AAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQ 384 (603)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~ 384 (603)
..+++..+|++|||+++ .|||||++++.++++++++. ++|++|+++|.||+|++++|+.+ +|+..
T Consensus 201 -----------~~~~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~~--~~P~vI~v~t~kg~g~~~~e~~~~~H~~~ 266 (624)
T PRK05899 201 -----------FTEDVKKRFEAYGWHVI-EVDGHDVEAIDAAIEEAKAS--TKPTLIIAKTIIGKGAPNKEGTHKVHGAP 266 (624)
T ss_pred -----------ccccHHHHhccCCCeEE-EECCCCHHHHHHHHHHHHhc--CCCEEEEEEeEeccCCccccCCCcccCCC
Confidence 01233577999999999 79999999999999999876 79999999999999999998764 66532
Q ss_pred ccC------------CCCCCCCC--------------------C----CCCCccHHHHHHHHHHHHHhcCCCEEEEecCC
Q 007443 385 QEG------------ASDSNSLP--------------------F----GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428 (603)
Q Consensus 385 ~~~------------~~~~~~~p--------------------~----~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl 428 (603)
+.. ....-..+ + ..+..+++++|+++|.+++++||+++++++|+
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~ 346 (624)
T PRK05899 267 LGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSADL 346 (624)
T ss_pred CCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 210 00000000 0 01345679999999999999999999999999
Q ss_pred CCCcchhhhh------HhCCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEe
Q 007443 429 EMDLSLQLFQ------EKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT 501 (603)
Q Consensus 429 ~~~~~l~~f~------~~fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~ 501 (603)
++++++..|. ++||+||||+|||||+|+|+|+|||+.| ++||+++|++|++|+++||++. +++++||+++++
T Consensus 347 ~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v~~ 425 (624)
T PRK05899 347 AGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYVFT 425 (624)
T ss_pred ccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEEEE
Confidence 8887776665 6889999999999999999999999999 9999999999999999999996 999999999999
Q ss_pred CCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCCC-CCcccccc
Q 007443 502 SAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEVV 579 (603)
Q Consensus 502 ~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~-~~~~~~~G 579 (603)
++|+ .|.+|+|||++||+++||++|||+|++|+|++|+++++++++...++|+|||++|+..+.. ... ..+.+++|
T Consensus 426 ~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~--~~~~~~~~~~~G 503 (624)
T PRK05899 426 HDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL--ERTAQEEGVAKG 503 (624)
T ss_pred CCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCc--CCccccccccCC
Confidence 9999 6889999999999999999999999999999999999999976548999999999875421 111 13567888
Q ss_pred ccc---CCcEEEEEecHHHHHHHHhh
Q 007443 580 TRH---ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 580 ka~---G~dvtIIa~G~~v~~al~~~ 602 (603)
+.. |+|+|||++|.+|+.|+++.
T Consensus 504 ~~~l~~G~dvtiia~G~~v~~al~Aa 529 (624)
T PRK05899 504 GYVLRDDPDVILIATGSEVHLALEAA 529 (624)
T ss_pred cEEEecCCCEEEEEeCHHHHHHHHHH
Confidence 643 89999999999999999874
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=5e-79 Score=690.29 Aligned_cols=446 Identities=17% Similarity=0.198 Sum_probs=377.0
Q ss_pred HHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc----CC----CceeeecCCchH---HHHHHHhcc---h
Q 007443 100 KQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR---R 163 (603)
Q Consensus 100 ~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~----~p----~D~ii~d~GH~a---Y~~~~LtGr---~ 163 (603)
++++..||..+++|+. .++||+|++||++|++.+||+ +++ .| |||||+|+||.+ |+.+.+.|. .
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 5678999999999998 788999999999999999996 443 22 799999999998 999999997 6
Q ss_pred hHhhHhhhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccchHH
Q 007443 164 SLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (603)
Q Consensus 164 ~~~~~~R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~~~ 232 (603)
+.+.+|||.+ .++|||+....++.++++|++|+|++.|+|||+|.|+++ .+++|+|++|||+++||.+|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 8999999986 579999987788999999999999999999999999876 37899999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH
Q 007443 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (603)
Q Consensus 233 EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (603)
||+++|++++ +|||+|+|||+++|+ |+...+
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~~id-----g~~~~~------------------------------------------- 196 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGISID-----GHVEGW------------------------------------------- 196 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCccC-----cchhhc-------------------------------------------
Confidence 9999999999 669999999999983 222110
Q ss_pred hhhccCCCChhhHHhhcCCeEEee-cCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC--
Q 007443 312 YARGMIGPQGSTLFEELGLYYIGP-VDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG-- 387 (603)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~ig~-vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~-- 387 (603)
...+...+|++|||+++ . |||||+++|.++++++++. .++|++|+++|+||+|.+.+|+.+ +||..+..
T Consensus 197 -----~~~~~~~r~~a~Gw~vi-~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~ 269 (663)
T PRK12754 197 -----FTDDTAMRFEAYGWHVI-RGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAE 269 (663)
T ss_pred -----cCccHHHHHHhcCCeEE-eeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCCccccCCCCCHHH
Confidence 01122567999999999 6 8999999999999999864 378999999999999999888765 66543211
Q ss_pred ------------C------------------------------------CC---------CCCCCC--------------
Q 007443 388 ------------A------------------------------------SD---------SNSLPF-------------- 396 (603)
Q Consensus 388 ------------~------------------------------------~~---------~~~~p~-------------- 396 (603)
+ |. ...+|.
T Consensus 270 ~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 349 (663)
T PRK12754 270 IALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQ 349 (663)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhc
Confidence 0 00 001121
Q ss_pred -CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc-----hhhhhHhCCCCeeecchhhHHHHHHHHHHhc-CCCeE
Q 007443 397 -GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKP 469 (603)
Q Consensus 397 -~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~-----l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~-~G~~P 469 (603)
.++..++|++++++|.++++.+++++++++|+.+++. ...|+++||+|||++||+||+|+++|+|||+ .|++|
T Consensus 350 ~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~P 429 (663)
T PRK12754 350 ANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLP 429 (663)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCeE
Confidence 1134688999999999999999999999999988775 4678889999999999999999999999999 78999
Q ss_pred EEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh
Q 007443 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (603)
Q Consensus 470 ~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~ 548 (603)
|+.+|+.|++|+++|||++ |++++||+++++|+|+ .|+||+|||++||+++||.||||+|+.|+|+.|+..+++.++.
T Consensus 430 f~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~ 508 (663)
T PRK12754 430 YTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE 508 (663)
T ss_pred EEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHh
Confidence 9999999999999999997 9999999999999999 6999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeecCCCccccCCCCCCccccccccc---C---CcEEEEEecHHHHHHHHh
Q 007443 549 IDDRPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH---A---SCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 549 ~~~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~---G---~dvtIIa~G~~v~~al~~ 601 (603)
..++|+|||++|++.+...-.......+..|+-. | .|++||++|.+|+.||++
T Consensus 509 ~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~~vl~~~~~~~dv~iiatGs~v~~Al~A 567 (663)
T PRK12754 509 RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAA 567 (663)
T ss_pred CCCCCEEEEeCCCCCCCCCCccchhhhcccCcEEEEecCCCCCEEEEEECHHHHHHHHH
Confidence 6689999999998765321101101234444321 2 499999999999999987
No 15
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2.1e-78 Score=688.96 Aligned_cols=444 Identities=19% Similarity=0.233 Sum_probs=376.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc----CC----CceeeecCCchH---HHHHHHhcc---hh
Q 007443 101 QLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR---RS 164 (603)
Q Consensus 101 ~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~----~p----~D~ii~d~GH~a---Y~~~~LtGr---~~ 164 (603)
+.+.++|..+++|+. .++||+|+++|++|++.+||+ +++ .| ||+||+|+||.+ |+.+.+.|+ .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 467889999999998 888999999999999999996 454 23 799999999998 999999996 47
Q ss_pred HhhHhhhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccchHHH
Q 007443 165 LIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAYE 233 (603)
Q Consensus 165 ~~~~~R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~~~E 233 (603)
++.+||+.+ .++|||++..+++..+++|++|+|++.|+|||+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 899999987 578999987788989999999999999999999998763 378899999999999999999
Q ss_pred HHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHh
Q 007443 234 AMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (603)
Q Consensus 234 Aln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~ 312 (603)
|+++|+.++ +||++|+|||+++++ ++...+ .
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~i~-----~~~~~~-----------------------------~-------------- 193 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRISID-----GAVDGS-----------------------------F-------------- 193 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCeeec-----cccccc-----------------------------c--------------
Confidence 999999999 779999999999983 222111 0
Q ss_pred hhccCCCChhhHHhhcCCeEEeec-CCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC---
Q 007443 313 ARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG--- 387 (603)
Q Consensus 313 ~~~~~~~~~~~lfea~G~~~ig~v-DGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~--- 387 (603)
..+...+|++|||+++ .| ||||++++.++++++++. .++|++|+++|+||+|++++|+.+ +||..+..
T Consensus 194 -----~~~~~~~~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~~~~H~~~~~~~~~ 266 (653)
T TIGR00232 194 -----TEDVAKRFEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGTHGVHGAPLGDEDV 266 (653)
T ss_pred -----CccHHHHHHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCCCcccCCCCCHHHH
Confidence 0112467999999999 78 999999999999999875 248999999999999999888765 55432210
Q ss_pred -----------C--------------------------------------CC---------CCCCCC-----------CC
Q 007443 388 -----------A--------------------------------------SD---------SNSLPF-----------GN 398 (603)
Q Consensus 388 -----------~--------------------------------------~~---------~~~~p~-----------~~ 398 (603)
. |. ...+|. ..
T Consensus 267 ~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 346 (653)
T TIGR00232 267 KLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKL 346 (653)
T ss_pred HHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhccC
Confidence 0 00 001110 12
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhh-----hhHhCCCCeeecchhhHHHHHHHHHHhc-CCCeEEEE
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQL-----FQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPFCI 472 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~-----f~~~fp~R~id~GIaE~~~vg~AaGlA~-~G~~P~~~ 472 (603)
+..++|++|+++|.++++.+|++|++++|+..++++.. |+++||+||||+||+||+|+++|+|||+ .|++||++
T Consensus 347 ~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~ 426 (653)
T TIGR00232 347 QALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYGG 426 (653)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEEE
Confidence 34689999999999999999999999999988877644 8899999999999999999999999999 78999999
Q ss_pred ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCC
Q 007443 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (603)
Q Consensus 473 ~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 551 (603)
+|+.|++|+++|||+. |++++||+++++|+|+ +|.||+|||++||+++||+||||+|++|+|+.|++.++++++...+
T Consensus 427 tf~~F~~r~~~~ir~~-a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~ 505 (653)
T TIGR00232 427 TFLMFVDYARPAIRLA-ALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQD 505 (653)
T ss_pred EhHHHHHHHHHHHHHH-HhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCC
Confidence 9999999999999997 9999999999999999 6999999999999999999999999999999999999999985678
Q ss_pred CcEEEEeecCCCccccCCCCCCccccccc-----ccCCcEEEEEecHHHHHHHHhh
Q 007443 552 RPVCFRYPRGAIVRTDLPGYRGIPIEVVT-----RHASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 552 ~P~~ir~~r~~~~~~~~~~~~~~~~~~Gk-----a~G~dvtIIa~G~~v~~al~~~ 602 (603)
+|+|||++|+..+... ......++.|+ .+|+|+|||++|.+|+.||++.
T Consensus 506 gP~~irl~r~~~~~~~--~~~~~~~~~G~~vl~~~~g~dv~iia~G~~v~~al~Aa 559 (653)
T TIGR00232 506 GPTALILSRQNLPQLE--ESSLEKVLKGGYVLKDSKGPDIILIATGSEVSLAVEAA 559 (653)
T ss_pred CcEEEEEcCCccCCCC--cccccccCCCcEEEEecCCCCEEEEEeChHHHHHHHHH
Confidence 9999999998764221 11113455554 2389999999999999999873
No 16
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=3e-79 Score=610.12 Aligned_cols=270 Identities=53% Similarity=0.859 Sum_probs=200.6
Q ss_pred ccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhc
Q 007443 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (603)
Q Consensus 82 l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtG 161 (603)
|++|++|+|||+|+.+||++||+|||++|++.++++|||++||||+|||++|||||||.|+|+||||+|||+|+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhc
Q 007443 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (603)
Q Consensus 162 r~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 241 (603)
|++.|.|+||+||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||+|+.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCCh
Q 007443 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (603)
Q Consensus 242 ~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (603)
+.|++||+|||+||| +++||+++++|.++++++.|..+|+..|.+++.+ +++.+.+.++++.+|++ .+
T Consensus 161 ~~~liVILNDN~mSI--------s~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~-- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEMSI--------SPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP-- 228 (270)
T ss_dssp T-SEEEEEEE-SBSS--------SB--SSHCCC-----------------------------------------------
T ss_pred CCCEEEEEeCCCccc--------CCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH--
Confidence 999999999999999 7799999999999999999999999999999887 67788888999999887 33
Q ss_pred hhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 322 ~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
.+||+|||+|+||+||||+++|+++|+++|+. +||++||++|
T Consensus 229 -~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 -NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp -CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred -HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 89999999999999999999999999999998 9999999998
No 17
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-72 Score=607.40 Aligned_cols=451 Identities=20% Similarity=0.242 Sum_probs=385.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHhh---cc--CC----CceeeecCCchH---HHHHHHhcc
Q 007443 96 IKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDVGEQT---YAHKILTGR 162 (603)
Q Consensus 96 ~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~v---f~--~p----~D~ii~d~GH~a---Y~~~~LtGr 162 (603)
.+.++++++.||...+++|+ +++||+|..+|++++...||.- || .| |||||+|.||.+ |+...|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 45678899999999999998 8999999999999999998763 33 34 899999999998 999999997
Q ss_pred ---hhHhhHhhhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcccc
Q 007443 163 ---RSLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMA 228 (603)
Q Consensus 163 ---~~~~~~~R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal~e 228 (603)
.+++..|||++ ..+|||+....++.+.+||++||||+.|+|||+|.+..+. |++++|++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 68899999997 5789999888899999999999999999999999876542 569999999999999
Q ss_pred chHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHH
Q 007443 229 GQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (603)
Q Consensus 229 G~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (603)
|+++||...|++++ .|||+|+|||+.+|+ |...-+
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~IsiD-----G~~~~~--------------------------------------- 198 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDISID-----GDTSLS--------------------------------------- 198 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCceec-----cCcccc---------------------------------------
Confidence 99999999999999 999999999999994 332211
Q ss_pred hHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhccc
Q 007443 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQE 386 (603)
Q Consensus 308 ~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~ 386 (603)
++.+-.+.||++||+++..+||||+++|.+|+++||+. +++|++|+|+|+.|+|-+..|... .||.++.
T Consensus 199 ---------f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg 268 (663)
T COG0021 199 ---------FTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLG 268 (663)
T ss_pred ---------cchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCCCccccCCCCC
Confidence 01112467999999999999999999999999999985 379999999999999999977655 6665442
Q ss_pred CC---------------------------------------------------CC---------CCCCCC----------
Q 007443 387 GA---------------------------------------------------SD---------SNSLPF---------- 396 (603)
Q Consensus 387 ~~---------------------------------------------------~~---------~~~~p~---------- 396 (603)
.+ |. ...+|.
T Consensus 269 ~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~ 348 (663)
T COG0021 269 EEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFE 348 (663)
T ss_pred HHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhhhc
Confidence 10 00 001221
Q ss_pred -CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchh-----hhh-HhCCCCeeecchhhHHHHHHHHHHhcCC-Ce
Q 007443 397 -GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ-----LFQ-EKFPERYFDVGMAEQHAVTFSAGLACGG-LK 468 (603)
Q Consensus 397 -~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~-----~f~-~~fp~R~id~GIaE~~~vg~AaGlA~~G-~~ 468 (603)
+++.+.+|+++.++|..+....|+++..+||+++++.+. .|. +.|++|+|.+||+|++|.+++.|||+.| ++
T Consensus 349 ~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~ 428 (663)
T COG0021 349 ANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFI 428 (663)
T ss_pred ccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCce
Confidence 123478999999999999999999999999999887652 243 5678999999999999999999999975 69
Q ss_pred EEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Q 007443 469 PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (603)
Q Consensus 469 P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 547 (603)
||..+|..|+.+++.+||.. |++++|++++.+|+++ +|+||||||++|+++.||+|||+.|+.|+|+.|+..+|+.|+
T Consensus 429 pyggTFlvFsdY~r~AiRla-ALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al 507 (663)
T COG0021 429 PYGGTFLVFSDYARPAVRLA-ALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKYAL 507 (663)
T ss_pred eecceehhhHhhhhHHHHHH-HhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHHHH
Confidence 99999999999999999996 9999999999999999 799999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEeecCCCccccCC-----CCCCcccccccccCCcEEEEEecHHHHHHHHh
Q 007443 548 SIDDRPVCFRYPRGAIVRTDLP-----GYRGIPIEVVTRHASCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 548 ~~~~~P~~ir~~r~~~~~~~~~-----~~~~~~~~~Gka~G~dvtIIa~G~~v~~al~~ 601 (603)
.+.++|+++.++|++.+..+-. ..+.|.+.-++.+..|++|||+|++|.+|+++
T Consensus 508 ~~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~A 566 (663)
T COG0021 508 ERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEA 566 (663)
T ss_pred hcCCCCeEEEEecCCCCccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHH
Confidence 8889999999999998643211 12355554443336899999999999999986
No 18
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.1e-70 Score=628.47 Aligned_cols=450 Identities=16% Similarity=0.161 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC------CCcccCccchHHHHHHHHh-hccCC-----CceeeecCCchH---HHHHHHh
Q 007443 97 KELKQLAVEIRSELSSIVS-KT------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILT 160 (603)
Q Consensus 97 ~~L~~la~~iR~~ii~~v~-~~------gGHlgsslg~~el~~aL~~-vf~~p-----~D~ii~d~GH~a---Y~~~~Lt 160 (603)
+-+++++..+|+.++.|+. ++ |||+|+++|+++++.+||+ +|+.+ +| +|+++||.+ |+..++.
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~ 151 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHc
Confidence 3357789999999999997 55 6999999999999999985 56532 45 899999998 9999999
Q ss_pred cc--hhHhhHhhhc---CCCCCCCCCCC-CCCCCcCcCchhhhHHHHHHHHHHHHHc-------CCCCeEEEEEcCCccc
Q 007443 161 GR--RSLIHTLRKK---DGISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIK-------GKRECIVTVISNGTTM 227 (603)
Q Consensus 161 Gr--~~~~~~~R~~---ggl~g~~~~~e-s~~d~~~~G~~G~~is~A~G~A~A~~l~-------g~~~~Vv~viGDGal~ 227 (603)
|+ .+++.+|||. +++++||++.. +++..|+||++|+|++.|+|||++.|+. ..+++|||++|||+++
T Consensus 152 G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~ 231 (889)
T TIGR03186 152 GFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD 231 (889)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc
Confidence 97 7899999996 47889888765 3468899999999999999999997743 2368999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHH
Q 007443 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWA 306 (603)
Q Consensus 228 eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 306 (603)
||++|||+..|++++ +|||+|+|+|++++ ||+...++.+.
T Consensus 232 EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ql-----DG~t~~~~~~~---------------------------------- 272 (889)
T TIGR03186 232 EPESIGALSLAARERLDNLVFVINCNLQRL-----DGPVRGNGRII---------------------------------- 272 (889)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCCCCcc-----CCccccccccc----------------------------------
Confidence 999999999999999 99999999999998 55554332210
Q ss_pred HhHHHhhhccCCCChhhHHhhcCCeEEeec--------------------------------------------------
Q 007443 307 AKVDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------------------------------- 336 (603)
Q Consensus 307 ~~~~~~~~~~~~~~~~~lfea~G~~~ig~v-------------------------------------------------- 336 (603)
+ +.+.+|++|||+++ .|
T Consensus 273 ---e---------~l~~kf~a~GW~vi-~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~ 339 (889)
T TIGR03186 273 ---D---------ELESQFAGAGWNVI-KVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDP 339 (889)
T ss_pred ---h---------HHHHHHHhCCCEEE-EEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccH
Confidence 0 11456888888888 56
Q ss_pred -------------------CCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccC-C-chhh-hc----------
Q 007443 337 -------------------DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK-S-EAIE-KQ---------- 384 (603)
Q Consensus 337 -------------------DGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~-~-~~~g-~~---------- 384 (603)
+|||+++|++|+++|++. .++|++|.++|+||+|...+++ . .+|+ ++
T Consensus 340 ~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r 418 (889)
T TIGR03186 340 ALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH-EGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFR 418 (889)
T ss_pred HHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHH
Confidence 799999999999999875 2689999999999999977654 2 2333 11
Q ss_pred ------cc-----C----CC----------------------CCC-------CCCC-----------CCCCccHHHHHHH
Q 007443 385 ------QE-----G----AS----------------------DSN-------SLPF-----------GNYSRTYDDCFIE 409 (603)
Q Consensus 385 ------~~-----~----~~----------------------~~~-------~~p~-----------~~~~~s~~~a~~~ 409 (603)
+. . ++ .+. ..|. .++.+|++.||++
T Consensus 419 ~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r 498 (889)
T TIGR03186 419 DRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVR 498 (889)
T ss_pred HHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHH
Confidence 10 0 00 000 1121 1356899999999
Q ss_pred HHHHHHh---cCCCEEEEecCCCCCcchhh-------------------------hhHhCCCCeeecchhhHHHHH--HH
Q 007443 410 ALVMEAE---KDKDIVVVHAGMEMDLSLQL-------------------------FQEKFPERYFDVGMAEQHAVT--FS 459 (603)
Q Consensus 410 aL~~~~~---~d~~vvvi~aDl~~~~~l~~-------------------------f~~~fp~R~id~GIaE~~~vg--~A 459 (603)
+|..+++ ..++||.+.+|++.+|++++ +++.+|+|||++||+||+|++ +|
T Consensus 499 ~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iA 578 (889)
T TIGR03186 499 MLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIA 578 (889)
T ss_pred HHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHH
Confidence 9666665 47899999999999996543 446689999999999999999 99
Q ss_pred HHHhcC----CCeEEEEecHHhH-HHHHHHHHHHhhcCCCCeEEEEeCCCC-C-CCCCCCCCChhhHHHHhcCCCcEEEe
Q 007443 460 AGLACG----GLKPFCIIPSAFL-QRAYDQVVNDVDQQRLPVRFVITSAGL-V-GSDGPTQCGAFDITFMSCLPNMIVMA 532 (603)
Q Consensus 460 aGlA~~----G~~P~~~~~~~Fl-~ra~dQi~~~~a~~~lpV~~~~~~~G~-~-g~dG~tH~~~~dia~lr~iPnl~V~~ 532 (603)
+|+|.. |++||+.+|+.|. +|++||||++ |+++++|++++.++|+ + +.+|+|||..+|+++||.||||+|+.
T Consensus 579 AGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~ 657 (889)
T TIGR03186 579 AATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWD 657 (889)
T ss_pred HHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEe
Confidence 999988 7899999999995 8999999998 9999999999999999 4 88999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHh----C-CCCcEEEEeecCCCccccCCCCCC-ccccccc--c---------cCCcEEEEEecHHH
Q 007443 533 PSDEDELVDMVATVAS----I-DDRPVCFRYPRGAIVRTDLPGYRG-IPIEVVT--R---------HASCTCLIITFEML 595 (603)
Q Consensus 533 Psd~~e~~~~l~~a~~----~-~~~P~~ir~~r~~~~~~~~~~~~~-~~~~~Gk--a---------~G~dvtIIa~G~~v 595 (603)
|+|+.|++.++++++. . .++|+|||+.|.++....++.+ + ..+++|+ + +|.||+||++|.+|
T Consensus 658 PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~-~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v 736 (889)
T TIGR03186 658 PAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPED-RLDAVRRGILKGMYPLDPAALAAARVQLLGSGAIL 736 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCC-cccchhcchhheeeEeeccCCCCCCEEEEeccHHH
Confidence 9999999999998654 2 4789999999997632222222 2 2344554 3 47899999999999
Q ss_pred HHHHHhh
Q 007443 596 LCFLHVL 602 (603)
Q Consensus 596 ~~al~~~ 602 (603)
+.||++.
T Consensus 737 ~eAL~AA 743 (889)
T TIGR03186 737 GEVQAAA 743 (889)
T ss_pred HHHHHHH
Confidence 9999863
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.8e-69 Score=619.49 Aligned_cols=470 Identities=18% Similarity=0.185 Sum_probs=378.4
Q ss_pred CCcCccCCCChhhhccCCHHH-HHHHHHHHHHHHHHHHh-cCC------CcccCccchHHHHHHHHh-hcc-----CCCc
Q 007443 78 PTPILDLVENPLRLKSLTIKE-LKQLAVEIRSELSSIVS-KTE------KSLKSSLAAVELTVALHH-VFH-----APVD 143 (603)
Q Consensus 78 ~~~~l~~i~~p~~~k~l~~~~-L~~la~~iR~~ii~~v~-~~g------GHlgsslg~~el~~aL~~-vf~-----~p~D 143 (603)
.||++++|.-.+.-+--...+ +++++..+|+.++.|+. ++. ||+|+++|+++++.+||. +|+ ..+|
T Consensus 67 ~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D 146 (896)
T PRK13012 67 TTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD 146 (896)
T ss_pred CCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 367777774333222222233 34589999999999997 554 999999999999999985 555 1378
Q ss_pred eeeecCCchH---HHHHHHhcc--hhHhhHhhhc---CCCCCCCCCCCCC-CCCcCcCchhhhHHHHHHHHHHHH-----
Q 007443 144 KILWDVGEQT---YAHKILTGR--RSLIHTLRKK---DGISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARD----- 209 (603)
Q Consensus 144 ~ii~d~GH~a---Y~~~~LtGr--~~~~~~~R~~---ggl~g~~~~~es~-~d~~~~G~~G~~is~A~G~A~A~~----- 209 (603)
+|+++||.+ |+..++.|+ .+++.+|||. +|+++||++...+ +..|+||++|+|++.|+|+|++.|
T Consensus 147 -~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~ 225 (896)
T PRK13012 147 -LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHR 225 (896)
T ss_pred -EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhccccccc
Confidence 699999998 999999998 7899999987 5899999987654 688999999999999999999987
Q ss_pred --HcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHH
Q 007443 210 --IKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQ 286 (603)
Q Consensus 210 --l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~ 286 (603)
.+..+++|||++|||+|+||.+|||+..|++++ +||++|+|+|.+++ ||+...++.+
T Consensus 226 g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~l-----DG~v~~~~~~--------------- 285 (896)
T PRK13012 226 GLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRL-----DGPVRGNGRI--------------- 285 (896)
T ss_pred ccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccc-----cCcccccccc---------------
Confidence 245679999999999999999999999999999 99999999999998 5655443321
Q ss_pred HHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeec--------------------------C---
Q 007443 287 LREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV--------------------------D--- 337 (603)
Q Consensus 287 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~v--------------------------D--- 337 (603)
+ . +.+.+|+++||+++ .| |
T Consensus 286 ---------------~-------~---------~l~~~f~a~GW~Vi-~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~y 333 (896)
T PRK13012 286 ---------------I-------Q---------ELEALFRGAGWNVI-KVLWGSDWDALFARDTTGALVRRFAETVDGQF 333 (896)
T ss_pred ---------------c-------h---------HHHHHHHhCCCEEE-EEecccchHHHhcCCCccHHHHHHHhCCcHHH
Confidence 0 0 11467999999999 67 8
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCC-ccc
Q 007443 338 ----------------------------------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAE-DTQ 376 (603)
Q Consensus 338 ----------------------------------------GhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~-~ae 376 (603)
|||+++|++|++++++. .++|++|.++|+||+|.+ ..|
T Consensus 334 q~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e 412 (896)
T PRK13012 334 QTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGE 412 (896)
T ss_pred HHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccC
Confidence 99999999999998865 268999999999999998 446
Q ss_pred CCc-hhh-hcc----------------cCC-------------------------------CCCC------CCCC-----
Q 007443 377 KSE-AIE-KQQ----------------EGA-------------------------------SDSN------SLPF----- 396 (603)
Q Consensus 377 ~~~-~~g-~~~----------------~~~-------------------------------~~~~------~~p~----- 396 (603)
... +|+ +.+ .++ |.+. ..|.
T Consensus 413 ~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~ 492 (896)
T PRK13012 413 GRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFA 492 (896)
T ss_pred CCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHH
Confidence 554 554 211 100 0000 0110
Q ss_pred ------CCCCccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcchh-------------------------hhhHhCC
Q 007443 397 ------GNYSRTYDDCFIEALVMEAEK---DKDIVVVHAGMEMDLSLQ-------------------------LFQEKFP 442 (603)
Q Consensus 397 ------~~~~~s~~~a~~~aL~~~~~~---d~~vvvi~aDl~~~~~l~-------------------------~f~~~fp 442 (603)
.++.+++|+||+++|.++++. .++||++++|++.+|+++ .|++.||
T Consensus 493 ~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~p 572 (896)
T PRK13012 493 QFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKD 572 (896)
T ss_pred HhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCC
Confidence 134579999999999999987 999999999999887662 3457789
Q ss_pred CCeeecchhhHHHHH--HHHHHhcC----CCeEEEEecHHh-HHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCC
Q 007443 443 ERYFDVGMAEQHAVT--FSAGLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQC 514 (603)
Q Consensus 443 ~R~id~GIaE~~~vg--~AaGlA~~----G~~P~~~~~~~F-l~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~ 514 (603)
+|||++||+||+|++ +|+|+|.. |++||+.+|+.| .+|++||++++++++..+|+++++++|+ .|++|+|||
T Consensus 573 gR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ 652 (896)
T PRK13012 573 GQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQ 652 (896)
T ss_pred CcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCc
Confidence 999999999999999 88888776 679999999999 6899999999999999999999999998 589999999
Q ss_pred ChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC-----CCCcEEEEeecCCCccccCCCCCCcccccccc------cC
Q 007443 515 GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-----DDRPVCFRYPRGAIVRTDLPGYRGIPIEVVTR------HA 583 (603)
Q Consensus 515 ~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~-----~~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka------~G 583 (603)
..+|+++||.||||+|+.|+|+.|++.+++.++.+ .++|+|||+.|++++...++.+....|..|+. +|
T Consensus 653 ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~~i~kG~y~l~~~~~g 732 (896)
T PRK13012 653 DGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEEGILKGMYRLAAAAEA 732 (896)
T ss_pred chHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchhccccCcEEEeccCCC
Confidence 99999999999999999999999999999987632 36899999999987422233221233334432 25
Q ss_pred CcEEEEEecHHHHHHHHh
Q 007443 584 SCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 584 ~dvtIIa~G~~v~~al~~ 601 (603)
.|++||++|.+|+.||++
T Consensus 733 ~dv~LiasGs~v~eAl~A 750 (896)
T PRK13012 733 PRVQLLGSGAILREVLAA 750 (896)
T ss_pred CCEEEEEecHHHHHHHHH
Confidence 699999999999999986
No 20
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=2.3e-68 Score=609.55 Aligned_cols=468 Identities=17% Similarity=0.199 Sum_probs=379.1
Q ss_pred CCcCccCCCChhhhccCCHHHH-HHHHHHHHHHHHHHHh-cC------CCcccCccchHHHHHHHHh-hccCC-----Cc
Q 007443 78 PTPILDLVENPLRLKSLTIKEL-KQLAVEIRSELSSIVS-KT------EKSLKSSLAAVELTVALHH-VFHAP-----VD 143 (603)
Q Consensus 78 ~~~~l~~i~~p~~~k~l~~~~L-~~la~~iR~~ii~~v~-~~------gGHlgsslg~~el~~aL~~-vf~~p-----~D 143 (603)
.||++++|.-.+.-+--...++ +++++.||+..+.||. ++ |||+++++|+++++.+||. +|+.| +|
T Consensus 59 ~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D 138 (891)
T PRK09405 59 TTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD 138 (891)
T ss_pred CCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 4777887744333322223333 4558999999999996 43 4999999999999999985 56543 45
Q ss_pred eeeecCCchH---HHHHHHhcc--hhHhhHhhhc---CCCCCCCCCCCC-CCCCcCcCchhhhHHHHHHHHHHHHH----
Q 007443 144 KILWDVGEQT---YAHKILTGR--RSLIHTLRKK---DGISGYTSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI---- 210 (603)
Q Consensus 144 ~ii~d~GH~a---Y~~~~LtGr--~~~~~~~R~~---ggl~g~~~~~es-~~d~~~~G~~G~~is~A~G~A~A~~l---- 210 (603)
+|+++||.+ |+..+|.|+ .+++.+|||. ++|++||++... ++..|++|++|+|++.|+|+|++.|+
T Consensus 139 -~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~ 217 (891)
T PRK09405 139 -LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENR 217 (891)
T ss_pred -EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccc
Confidence 899999998 999999998 7899999995 489999998664 46789999999999999999999883
Q ss_pred ---cCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHH
Q 007443 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQ 286 (603)
Q Consensus 211 ---~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~ 286 (603)
+..+++|||++|||+|+||.+|||+..|++++ +|||+|+|+|.+++ ||+...++.+.
T Consensus 218 ~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~l-----DG~v~~~~~~~-------------- 278 (891)
T PRK09405 218 GLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRL-----DGPVRGNGKII-------------- 278 (891)
T ss_pred ccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCccc-----CCccccccccc--------------
Confidence 45679999999999999999999999999999 99999999999998 56554433211
Q ss_pred HHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeec--------------------------C---
Q 007443 287 LREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV--------------------------D--- 337 (603)
Q Consensus 287 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~v--------------------------D--- 337 (603)
+ +.+.+|+++||+++ .| |
T Consensus 279 -----------------------~---------~l~~~f~a~GW~Vi-~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~y 325 (891)
T PRK09405 279 -----------------------Q---------ELEGIFRGAGWNVI-KVIWGSRWDPLLAKDTSGKLVQLMNETVDGDY 325 (891)
T ss_pred -----------------------h---------hHHHHHhhCCCEEE-EEeccccchhhhccCCccHHHHHHHhCCcHHH
Confidence 0 11456899999999 66 4
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCC-Cccc
Q 007443 338 ----------------------------------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRA-EDTQ 376 (603)
Q Consensus 338 ----------------------------------------GhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~-~~ae 376 (603)
|||+++|++|++++++. .++|++|.++|+||+|. +..|
T Consensus 326 q~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e 404 (891)
T PRK09405 326 QTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGE 404 (891)
T ss_pred HHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccC
Confidence 99999999999998875 36899999999999999 5556
Q ss_pred CCc-hhh-----------------hcccC---------CC----------------------CCC------CCCC-----
Q 007443 377 KSE-AIE-----------------KQQEG---------AS----------------------DSN------SLPF----- 396 (603)
Q Consensus 377 ~~~-~~g-----------------~~~~~---------~~----------------------~~~------~~p~----- 396 (603)
... +|+ .++.+ ++ .+. .+|.
T Consensus 405 ~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~ 484 (891)
T PRK09405 405 GKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFE 484 (891)
T ss_pred CCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHH
Confidence 544 443 11100 00 000 1121
Q ss_pred ------CCCCccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcch-------------------------hhhhHhCC
Q 007443 397 ------GNYSRTYDDCFIEALVMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFP 442 (603)
Q Consensus 397 ------~~~~~s~~~a~~~aL~~~~~~---d~~vvvi~aDl~~~~~l-------------------------~~f~~~fp 442 (603)
+++.+++++||+++|.++++. .++||.+.+|++.+|++ ..|++.||
T Consensus 485 ~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~P 564 (891)
T PRK09405 485 ALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKD 564 (891)
T ss_pred HhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCC
Confidence 135689999999999999996 89999999999998887 45778899
Q ss_pred CCeeecchhhHHHHH--HHHHHhcC----CCeEEEEecHHh-HHHHHHHHHHHhhcCCCCeEEEEeCCCCC-CCCCCCCC
Q 007443 443 ERYFDVGMAEQHAVT--FSAGLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGLV-GSDGPTQC 514 (603)
Q Consensus 443 ~R~id~GIaE~~~vg--~AaGlA~~----G~~P~~~~~~~F-l~ra~dQi~~~~a~~~lpV~~~~~~~G~~-g~dG~tH~ 514 (603)
+|||++||+||+|++ +|+|+|.. |++||+.+|+.| ++|++||||+++++++++|+++++++|++ +.+|.|||
T Consensus 565 gRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHq 644 (891)
T PRK09405 565 GQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHE 644 (891)
T ss_pred CcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCC
Confidence 999999999999999 99999988 789999999999 68999999999999999999999999994 88999999
Q ss_pred ChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCC--cEEEEeecCCCccccCCCCCCcccccccc-c----CC
Q 007443 515 GAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDR--PVCFRYPRGAIVRTDLPGYRGIPIEVVTR-H----AS 584 (603)
Q Consensus 515 ~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~--P~~ir~~r~~~~~~~~~~~~~~~~~~Gka-~----G~ 584 (603)
..+|+.+||.||||+|+.|+|+.|++.+++.++. ...+ |.|+|+...++.....| +++.+.+||+ . |.
T Consensus 645 dg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~~p--e~~~~~igKg~y~Lr~g~ 722 (891)
T PRK09405 645 DGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMP--EGAEEGILKGMYKLETAE 722 (891)
T ss_pred chhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCCCC--cccccccceEEEEeccCC
Confidence 9999999999999999999999999999999864 1344 77788763332211122 2466788886 2 44
Q ss_pred ------cEEEEEecHHHHHHHHh
Q 007443 585 ------CTCLIITFEMLLCFLHV 601 (603)
Q Consensus 585 ------dvtIIa~G~~v~~al~~ 601 (603)
||+||++|.+|+.||++
T Consensus 723 ~~~~~~dV~LlasG~~v~eAL~A 745 (891)
T PRK09405 723 GKKGKPKVQLLGSGTILREVLEA 745 (891)
T ss_pred CCCCCCCEEEEeccHHHHHHHHH
Confidence 89999999999999986
No 21
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=2.1e-52 Score=472.90 Aligned_cols=469 Identities=16% Similarity=0.191 Sum_probs=366.0
Q ss_pred CCcCccCCCChhhhccCCHHH-HHHHHHHHHHHHHHHHh-cC------CCcccCccchHHHHHHHHh-hccC-C----Cc
Q 007443 78 PTPILDLVENPLRLKSLTIKE-LKQLAVEIRSELSSIVS-KT------EKSLKSSLAAVELTVALHH-VFHA-P----VD 143 (603)
Q Consensus 78 ~~~~l~~i~~p~~~k~l~~~~-L~~la~~iR~~ii~~v~-~~------gGHlgsslg~~el~~aL~~-vf~~-p----~D 143 (603)
.||++++|.-...-+--...+ .++++..+|+.++.|+. ++ +||+|+++|+++++.+||+ +|+. | +|
T Consensus 53 ~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD 132 (885)
T TIGR00759 53 TTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD 132 (885)
T ss_pred CCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 477777774333322222233 35556899999999997 66 8999999999999999996 5652 2 68
Q ss_pred eeeecCCchH---HHHHHHhcc--hhHhhHhhh---cCCCCCCCCCCCC-CCCCcCcCchhhhHHHHHHHHHHHHH----
Q 007443 144 KILWDVGEQT---YAHKILTGR--RSLIHTLRK---KDGISGYTSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI---- 210 (603)
Q Consensus 144 ~ii~d~GH~a---Y~~~~LtGr--~~~~~~~R~---~ggl~g~~~~~es-~~d~~~~G~~G~~is~A~G~A~A~~l---- 210 (603)
+|+++||.+ |+..++.|+ .+++.+||+ .++|++||++... ++..|++|++|+|++.|+|+|++.|+
T Consensus 133 -~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~r 211 (885)
T TIGR00759 133 -LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENR 211 (885)
T ss_pred -EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 599999998 999999997 789999999 4689999998653 45789999999999999999999886
Q ss_pred ---cCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHH
Q 007443 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQ 286 (603)
Q Consensus 211 ---~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~ 286 (603)
+..+++|||++|||+|+||++|||+..|++++ +||++|+|+|++++ ||+...++.+...
T Consensus 212 g~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ql-----DG~v~~~~~i~e~------------ 274 (885)
T TIGR00759 212 GLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRL-----DGPVRGNGKIIQE------------ 274 (885)
T ss_pred ccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc-----CCccccccccchh------------
Confidence 55789999999999999999999999999999 99999999999998 5665544332111
Q ss_pred HHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeec------------------------------
Q 007443 287 LREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV------------------------------ 336 (603)
Q Consensus 287 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~v------------------------------ 336 (603)
.+.+|+++||+++ .|
T Consensus 275 ----------------------------------le~~F~a~GW~Vi-~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~y 319 (885)
T TIGR00759 275 ----------------------------------LESLFRGAGWNVI-KVLWGSEWDALLARDTSGVLVKLMNETVDGDY 319 (885)
T ss_pred ----------------------------------HHHHHHhcCCEEE-EEecCccchHhhcCCCccHHHHHHHhcccHHH
Confidence 1456788888888 56
Q ss_pred ---------------------------------------CCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCC-ccc
Q 007443 337 ---------------------------------------DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAE-DTQ 376 (603)
Q Consensus 337 ---------------------------------------DGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~-~ae 376 (603)
+|||+++|++|++++++. .++|++|.++|+||+|.+ ..|
T Consensus 320 q~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e 398 (885)
T TIGR00759 320 QTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAAE 398 (885)
T ss_pred HHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhhC
Confidence 699999999999988875 258999999999999998 445
Q ss_pred CCc-hhh-hccc---------------------CC----C----------------------CCC------CCCC-----
Q 007443 377 KSE-AIE-KQQE---------------------GA----S----------------------DSN------SLPF----- 396 (603)
Q Consensus 377 ~~~-~~g-~~~~---------------------~~----~----------------------~~~------~~p~----- 396 (603)
... +|+ +.+. .. + .+. .+|.
T Consensus 399 ~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~ 478 (885)
T TIGR00759 399 SRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFFG 478 (885)
T ss_pred CCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhH
Confidence 544 553 2110 00 0 000 1221
Q ss_pred ------CCCCccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcchhhhhHh----------C---------------C
Q 007443 397 ------GNYSRTYDDCFIEALVMEAEK---DKDIVVVHAGMEMDLSLQLFQEK----------F---------------P 442 (603)
Q Consensus 397 ------~~~~~s~~~a~~~aL~~~~~~---d~~vvvi~aDl~~~~~l~~f~~~----------f---------------p 442 (603)
+.+.+|++.||.+.|..+++. .++||.+.+|.+.+|+++++.++ | -
T Consensus 479 ~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~ 558 (885)
T TIGR00759 479 ALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKD 558 (885)
T ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCC
Confidence 135689999999999999976 46899999999999999776544 1 3
Q ss_pred CCeeecchhhHHHHHH--HHHHhc--CC--CeEEEEecHHh-HHHHHHHHHHHhhcCCCCeEEEEeCCCC-C-CCCCCCC
Q 007443 443 ERYFDVGMAEQHAVTF--SAGLAC--GG--LKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-V-GSDGPTQ 513 (603)
Q Consensus 443 ~R~id~GIaE~~~vg~--AaGlA~--~G--~~P~~~~~~~F-l~ra~dQi~~~~a~~~lpV~~~~~~~G~-~-g~dG~tH 513 (603)
+|+++.||+|.++++. |+|.|. .| ++||...|+.| +||..|.++- ++.+...-.++++.+|. + ...|-+|
T Consensus 559 Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~wa-a~d~~argfl~g~taGrtTL~gEGlqH 637 (885)
T TIGR00759 559 GQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWA-AADQRARGFLLGATAGRTTLNGEGLQH 637 (885)
T ss_pred CcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHHH-HhhhcCCceEeccCCCcccCCCccccC
Confidence 6999999999999986 555554 36 79999999999 8999999886 58999999999999999 4 6689999
Q ss_pred CChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC---CCCcEEEEeec--CCCccccCCC-------CCCcccccccc
Q 007443 514 CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR--GAIVRTDLPG-------YRGIPIEVVTR 581 (603)
Q Consensus 514 ~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~ir~~r--~~~~~~~~~~-------~~~~~~~~Gka 581 (603)
|..-...+...+||++.+.|+.+.|+..+++..+.+ ...-+|++++- .++..-..|. .+.|.+.-++.
T Consensus 638 qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~ 717 (885)
T TIGR00759 638 EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRFETSTE 717 (885)
T ss_pred ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceecccCCC
Confidence 988887777899999999999999999999988753 34578888877 4442111121 12444433222
Q ss_pred c--CCcEEEEEecHHHHHHHHh
Q 007443 582 H--ASCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 582 ~--G~dvtIIa~G~~v~~al~~ 601 (603)
. +.+|.|+++|..+..++++
T Consensus 718 ~~~~~~VqLlgSG~il~evl~A 739 (885)
T TIGR00759 718 EKAKGHVQLLGSGAIMRAVIEA 739 (885)
T ss_pred CCCCccEEEEeccHHHHHHHHH
Confidence 2 3589999999999999886
No 22
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-48 Score=386.26 Aligned_cols=200 Identities=34% Similarity=0.505 Sum_probs=188.3
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHH
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ 479 (603)
..++|++|+++|.++.+++++||++++|+.+++++..|.++||+||||+||+||+|+|+|||||+.|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -HHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 007443 480 -RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (603)
Q Consensus 480 -ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir 557 (603)
|+||||++++|++++||+++++++|+ .|.||+|||.+||+++||.||||+|++|+|+.+.+.++.+++. .+||+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 5899999999999999999999999999999999999999965 69999999
Q ss_pred eecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 558 YPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 558 ~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+.|...+.. + +..+|.|++||++ |+|+||||+|.||..|||+-
T Consensus 165 l~R~~~p~~-~-~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA 211 (312)
T COG3958 165 LGRGKVPVV-V-DEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAA 211 (312)
T ss_pred ecCCCCCce-e-cCCCceEeccceeEeecCCceEEEecCcchHHHHHHH
Confidence 999876532 2 2336999999997 99999999999999999973
No 23
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=350.49 Aligned_cols=222 Identities=23% Similarity=0.401 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc----CC----CceeeecCCchH---HHHHHHh
Q 007443 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILT 160 (603)
Q Consensus 94 l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~----~p----~D~ii~d~GH~a---Y~~~~Lt 160 (603)
++..+|++.|.++|+.++.|+. ...||+|+|||++|++++||+ +++ .| ||+||+|+||.+ |+.+...
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 5788999999999999999997 677899999999999999997 332 22 899999999998 8998999
Q ss_pred cc--hhHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHH
Q 007443 161 GR--RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (603)
Q Consensus 161 Gr--~~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~ 237 (603)
|. ++.+.+|++.++ |+|||.+...|+.+.++|++|||||+|+|||++.|+++.+.+|+++.|||++.||++|||++.
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 96 789999999875 999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc
Q 007443 238 AGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (603)
Q Consensus 238 A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (603)
|++++ +|||.|+|.|+.++ ||.++.+ +.
T Consensus 165 Aah~~L~NLiaivD~N~~Ql-----dG~t~~i--------------------------~~-------------------- 193 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQL-----DGETEEI--------------------------MP-------------------- 193 (243)
T ss_pred HHHhccCcEEEEEecCCccc-----CCchhhc--------------------------cC--------------------
Confidence 99999 99999999999998 4444322 00
Q ss_pred CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecC
Q 007443 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 317 ~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG 369 (603)
..+...+||+|||+++ +|||||+++|++++++++... ++|++|+++|+||
T Consensus 194 -~~pL~~k~eAFGw~V~-evdG~d~~~i~~a~~~~~~~~-~rP~~IIa~Tvkg 243 (243)
T COG3959 194 -KEPLADKWEAFGWEVI-EVDGHDIEEIVEALEKAKGSK-GRPTVIIAKTVKG 243 (243)
T ss_pred -cchhHHHHHhcCceEE-EEcCcCHHHHHHHHHhhhccC-CCCeEEEEecccC
Confidence 0123578999999999 999999999999999998762 4999999999987
No 24
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=7.6e-44 Score=349.86 Aligned_cols=195 Identities=59% Similarity=0.962 Sum_probs=179.9
Q ss_pred CCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhh
Q 007443 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNS 197 (603)
Q Consensus 118 gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~ 197 (603)
+||+|++||++|++++||++|+.|||+||+|+||++|++++++|+++.+.+||+.++++|||++.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999999988999999999999999999999999999999998899999998888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhh
Q 007443 198 VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (603)
Q Consensus 198 is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~ 277 (603)
+|+|+|+|+|.++++++++|||++|||+++||++||||++|++++.|+++|++||+++++ ++++.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~--------~~~~~------- 145 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSIS--------PNVGT------- 145 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccC--------CCCCC-------
Confidence 999999999999999999999999999999999999999999999999999999999873 22210
Q ss_pred hhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCC
Q 007443 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (603)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~ 357 (603)
...+|+++||++..++||||++++.++++++++. +
T Consensus 146 -------------------------------------------~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~--~ 180 (195)
T cd02007 146 -------------------------------------------PGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDL--K 180 (195)
T ss_pred -------------------------------------------HHHHHHhcCCCccceECCCCHHHHHHHHHHHHhC--C
Confidence 0345788999998669999999999999999875 8
Q ss_pred CcEEEEEEeecCCCC
Q 007443 358 GPVLVHVVTEENRRA 372 (603)
Q Consensus 358 gP~lI~v~T~kG~G~ 372 (603)
+|++|+++|+|||||
T Consensus 181 ~P~~I~~~T~kg~g~ 195 (195)
T cd02007 181 GPVLLHVVTKKGKGY 195 (195)
T ss_pred CCEEEEEEEecccCc
Confidence 999999999999997
No 25
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=2.6e-42 Score=362.88 Aligned_cols=231 Identities=23% Similarity=0.337 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc----CC----CceeeecCCchH---HHHHHHhcc---h
Q 007443 100 KQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR---R 163 (603)
Q Consensus 100 ~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~----~p----~D~ii~d~GH~a---Y~~~~LtGr---~ 163 (603)
+++|+++|..+++|+. +++||+|++||++|++++||. +++ .| |||||+|+||.+ |+...+.|. .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 4689999999999997 889999999999999999997 443 23 899999999998 999999997 4
Q ss_pred hHhhHhhhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccchHH
Q 007443 164 SLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (603)
Q Consensus 164 ~~~~~~R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~~~ 232 (603)
+.+.+||+.+ .++|||+....++..+++|++|+|+|.|+|||+|.|+++ .+++|+|++|||+++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 7889999986 579999987789999999999999999999999988653 36789999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH
Q 007443 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (603)
Q Consensus 233 EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (603)
||+.+|++++ +|||+|+|+|+++++ |....+ + ..
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q~d-----g~~~~~--~-------------------------------------~~- 196 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQID-----GPTDIV--F-------------------------------------SE- 196 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEETT-----EEGGGT--H-------------------------------------HS-
T ss_pred HHHHHHHHhCCCCEEEEEecCCcccC-----CCcccc--c-------------------------------------ch-
Confidence 9999999999 999999999999983 222110 0 00
Q ss_pred hhhccCCCChhhHHhhcCCeEEeec-CCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcc
Q 007443 312 YARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQ 385 (603)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~ig~v-DGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~ 385 (603)
+...+|++|||+++ .| ||||+++|.++|++++.. .++|++|+++|+||+|.+.+|+.+ +||.++
T Consensus 197 --------~~~~k~~a~Gw~v~-~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~l 262 (332)
T PF00456_consen 197 --------DIAKKFEAFGWNVI-EVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGTAKWHGSPL 262 (332)
T ss_dssp --------HHHHHHHHTT-EEE-EEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTSGGGTSS--
T ss_pred --------HHHHHHHHhhhhhc-ccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcccchhhccCC
Confidence 11456999999999 66 999999999999999875 378999999999999999998877 888655
No 26
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=9.2e-42 Score=359.49 Aligned_cols=198 Identities=17% Similarity=0.249 Sum_probs=173.5
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hhhhhHhCCC-CeeecchhhHHHHHHHHHHhcCCCeEEEEe-
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~----l~~f~~~fp~-R~id~GIaE~~~vg~AaGlA~~G~~P~~~~- 473 (603)
+++++++|+++|.+++++||+++++++|++.+.+ +++|+++||+ ||||+||+||+|||+|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 4689999999999999999999999999974444 4899999999 999999999999999999999999999997
Q ss_pred cHHhHHHHHHHHHHHhhcC--------CCCeEEEEeCCCCC-CCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLV-GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~--------~lpV~~~~~~~G~~-g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|+.|++|+||||++++|++ ++||+++ ++|.. +.+|+|||+..+ ++||+||||+|++|+|+.|++++++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 7778899999999999987 5666666 45554 469999977776 9999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCc-cccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIV-RTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+++. +++|+|||++|..++ ...++ .+++.+++||+. |+|+|||+||.||+.||++.
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~-~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa 220 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIP-DNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAV 220 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCC-CCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHH
Confidence 9964 689999998888775 22233 346789999986 99999999999999999974
No 27
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=2e-39 Score=368.03 Aligned_cols=425 Identities=13% Similarity=0.090 Sum_probs=317.7
Q ss_pred cCCCcccCccchHHHHHHHHhhccC-CCce-eeecCCchH---HHHHHHhc-----c------hhHhh-Hhhhc---CCC
Q 007443 116 KTEKSLKSSLAAVELTVALHHVFHA-PVDK-ILWDVGEQT---YAHKILTG-----R------RSLIH-TLRKK---DGI 175 (603)
Q Consensus 116 ~~gGHlgsslg~~el~~aL~~vf~~-p~D~-ii~d~GH~a---Y~~~~LtG-----r------~~~~~-~~R~~---ggl 175 (603)
+--||.|.+-|.-.+.+.|.++-.. ..|. +|.+.||.+ |+..+|.| . .+.|. .|||+ ||+
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~ 126 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGI 126 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCc
Confidence 3459999998888888888776543 2454 467999988 99999999 2 23366 47886 579
Q ss_pred CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccch---HHHHHHHhhhcC-CCEEEEEEC
Q 007443 176 SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILND 251 (603)
Q Consensus 176 ~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~---~~EAln~A~~~~-~nlivIlnd 251 (603)
++|+.+ +.++...++|++|+|++.|+|+|+. +++.+|+|++|||+..+|. .|++.+++...+ .|++.|+++
T Consensus 127 ~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 127 PSHAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred CCCCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 999985 6788889999999999999999965 6788999999999999998 599999998777 999999999
Q ss_pred CCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe
Q 007443 252 SRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY 331 (603)
Q Consensus 252 N~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~ 331 (603)
|+++|+ +++.-. . .+ .+ +..++|++|||+
T Consensus 202 Ng~~Is-----~pt~~~--~--------------------------~~---------~e---------~l~~rf~g~Gw~ 230 (785)
T PRK05261 202 NGYKIA-----NPTILA--R--------------------------IS---------DE---------ELEALFRGYGYE 230 (785)
T ss_pred cCCcCC-----CCcccc--c--------------------------cC---------cH---------hHHHHHHHCCCe
Confidence 999983 221100 0 00 00 114678999999
Q ss_pred EEeecCCCCHHHHHHHH--------H-------HHHhcC-CCCcE--EEEEEeecCCCCCc------ccCCc-hhhhccc
Q 007443 332 YIGPVDGHNIEDLISVL--------Q-------EVASLG-SMGPV--LVHVVTEENRRAED------TQKSE-AIEKQQE 386 (603)
Q Consensus 332 ~ig~vDGhD~~~l~~al--------~-------~a~~~~-~~gP~--lI~v~T~kG~G~~~------ae~~~-~~g~~~~ 386 (603)
.+ .|||||++++.+++ + +||... ..+|+ +|+++|.||+|-+. .|+.. .|+.++.
T Consensus 231 ~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~ 309 (785)
T PRK05261 231 PY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLA 309 (785)
T ss_pred eE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCC
Confidence 99 89999999988883 3 233221 15899 99999999999552 34332 2322221
Q ss_pred C------------------CC-----------------------------C------CC--CCCC------------CCC
Q 007443 387 G------------------AS-----------------------------D------SN--SLPF------------GNY 399 (603)
Q Consensus 387 ~------------------~~-----------------------------~------~~--~~p~------------~~~ 399 (603)
. +| . .. .+|. ...
T Consensus 310 ~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~ 389 (785)
T PRK05261 310 NVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVM 389 (785)
T ss_pred CcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccc
Confidence 0 00 0 00 0110 012
Q ss_pred CccHHHHHHHHHHHHHhcCCC-EEEEecCCCCCcchhhhhH-----------------hCCCCeeecchhhHHHHHHHHH
Q 007443 400 SRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE-----------------KFPERYFDVGMAEQHAVTFSAG 461 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~-vvvi~aDl~~~~~l~~f~~-----------------~fp~R~id~GIaE~~~vg~AaG 461 (603)
..+++. +++.|.++++.+|+ ++++++|...|.++....+ ..-+|+++ +++|+.|.|++.|
T Consensus 390 ~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~G 467 (785)
T PRK05261 390 AEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEG 467 (785)
T ss_pred cccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHH
Confidence 235666 99999999999999 8999999988887743221 12379999 9999999999999
Q ss_pred HhcCCCeEEEEecHHhH---HHHHHHH----HHHhh------cCCCCeEEEEeCCCC-CCCCCCCCCC---hhhHHHHhc
Q 007443 462 LACGGLKPFCIIPSAFL---QRAYDQV----VNDVD------QQRLPVRFVITSAGL-VGSDGPTQCG---AFDITFMSC 524 (603)
Q Consensus 462 lA~~G~~P~~~~~~~Fl---~ra~dQi----~~~~a------~~~lpV~~~~~~~G~-~g~dG~tH~~---~~dia~lr~ 524 (603)
+++.|.++|+.+|-.|+ ..++.|+ |.... +..++ ++.++.+. .|+||+|||. ++.++-+|.
T Consensus 468 y~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~ 545 (785)
T PRK05261 468 YLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVANKKP 545 (785)
T ss_pred HHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHhcCC
Confidence 99999999999999998 8889998 64311 13333 67777777 6999999999 999999988
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCC-------CCCCccccccc---ccCCcEEEEEecHH
Q 007443 525 LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-------GYRGIPIEVVT---RHASCTCLIITFEM 594 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~-------~~~~~~~~~Gk---a~G~dvtIIa~G~~ 594 (603)
|++.|+.|+|++|+..+++.|+...++|.+|..+|++.+...-. ..+.|.+..-+ ....|++|+++|++
T Consensus 546 -~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGse 624 (785)
T PRK05261 546 -DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDV 624 (785)
T ss_pred -CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcH
Confidence 99999999999999999999998788999999999987532100 12244443211 11369999999999
Q ss_pred HHH-HHHhh
Q 007443 595 LLC-FLHVL 602 (603)
Q Consensus 595 v~~-al~~~ 602 (603)
+.+ |+++.
T Consensus 625 v~leAlaAa 633 (785)
T PRK05261 625 PTLETLAAA 633 (785)
T ss_pred hhHHHHHHH
Confidence 998 88864
No 28
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.4e-41 Score=356.67 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=175.7
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEec
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~----l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~ 474 (603)
+++++++|+++|.+++++|++++++++|++.+.+ +++|+++| |+||||+|||||||||+|+|||++|++||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4689999999999999999999999999976555 38899999 999999999999999999999999999999997
Q ss_pred H-HhHHHHHHHHHHHhhcC--------CCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHH
Q 007443 475 S-AFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (603)
Q Consensus 475 ~-~Fl~ra~dQi~~~~a~~--------~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 545 (603)
+ +|++||||||++++|++ ++||++++.+ |.++.+|+|||+..| ++||+||||+|++|+|+.|+++++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 77899999999999998 4777777654 556789999988888 99999999999999999999999999
Q ss_pred HHhCCCCcEEEEeecCCCccc-cCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
++. +++|+|||++|..+... +++ .+++++++||++ |.|+|||+||+++..|+|+.
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~-~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa 220 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVP-EEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAA 220 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCC-CCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHH
Confidence 975 58999999988766421 233 235789999986 99999999999999999874
No 29
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=1.2e-40 Score=351.63 Aligned_cols=229 Identities=16% Similarity=0.186 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHh-cCC------CcccCccchHHHHHHHHh-hccC-----CCceeeecCCchH---HHHHHHhcc-
Q 007443 100 KQLAVEIRSELSSIVS-KTE------KSLKSSLAAVELTVALHH-VFHA-----PVDKILWDVGEQT---YAHKILTGR- 162 (603)
Q Consensus 100 ~~la~~iR~~ii~~v~-~~g------GHlgsslg~~el~~aL~~-vf~~-----p~D~ii~d~GH~a---Y~~~~LtGr- 162 (603)
+++...+|+.+++|+. ..+ ||+|+++|++|++++||+ +|+. +||+ |+++||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 4567889999999997 443 999999999999999985 6663 3899 77899999 999999998
Q ss_pred -hhHhhHhhhcCC---CCCCCCCCCCCC-CCcCcCchhhhHHHHHHHHHHHHH-------cCCCCeEEEEEcCCccccch
Q 007443 163 -RSLIHTLRKKDG---ISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAGQ 230 (603)
Q Consensus 163 -~~~~~~~R~~gg---l~g~~~~~es~~-d~~~~G~~G~~is~A~G~A~A~~l-------~g~~~~Vv~viGDGal~eG~ 230 (603)
.+.+.+||+.++ +++||++.+.+. .++++|++|+|++.|+|||+|.|+ ++.+++|||++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 588999999977 999999876554 789999999999999999999987 55789999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 231 ~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
+|||+++|++++ +|||+|+|+|++++ +|++..++.. .
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~qi-----dG~t~~v~~~-------------------------------------~ 201 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQRL-----DGPVRGNGKI-------------------------------------I 201 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcc-----CCcccccccC-------------------------------------c
Confidence 999999999999 89999999999998 3443332100 0
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecC----------------------------------------------------
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVD---------------------------------------------------- 337 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vD---------------------------------------------------- 337 (603)
.+.+.+|++|||+++ .||
T Consensus 202 ---------e~l~~kf~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 202 ---------QELEGIFRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred ---------hhHHHHHHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 012467999999999 887
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCc-ccCCc-hhh
Q 007443 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAED-TQKSE-AIE 382 (603)
Q Consensus 338 -----------------GhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~-ae~~~-~~g 382 (603)
|||+++|.+||++++.. .++|++|+++|+||+|.+. +|+.. +|+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~~~~h~ 334 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGRNHAHQ 334 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCCcchhc
Confidence 99999999999999864 2689999999999999984 67665 665
No 30
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.2e-40 Score=354.29 Aligned_cols=201 Identities=18% Similarity=0.275 Sum_probs=174.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~----l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
++++++++|+++|.+++++|++++++++|++.+.+ +++|.++| |+||||+|||||||||+|+|||++|++||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 45799999999999999999999999999976444 46788887 99999999999999999999999999999999
Q ss_pred -cHHhHHHHHHHHHHHhhcCC--------CCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 -PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 -~~~Fl~ra~dQi~~~~a~~~--------lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|++|++|+||||+|++|+++ +||++++++++..| +|+|||+.+ +++||+||||+|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 57788999999999999988 99999998844355 699999888 59999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCccc-cCCC---CCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIVRT-DLPG---YRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~~-~~~~---~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+++ .+++|+|||+++..+... ++.. .+++.+++||++ |+|+|||++|.+|+.|+++.
T Consensus 183 ~a~-~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa 247 (356)
T PLN02683 183 AAI-RDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAA 247 (356)
T ss_pred HHH-hCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHH
Confidence 997 468999999866554311 1111 124778899986 99999999999999999874
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.3e-38 Score=366.68 Aligned_cols=452 Identities=13% Similarity=0.131 Sum_probs=313.7
Q ss_pred cCCHHHHHHHHHHH-HHHHHH--HHh-cCCCcccCccchHHHHHHHHhhcc-----CCCceeeecCCchHHHHHHH--hc
Q 007443 93 SLTIKELKQLAVEI-RSELSS--IVS-KTEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--TG 161 (603)
Q Consensus 93 ~l~~~~L~~la~~i-R~~ii~--~v~-~~gGHlgsslg~~el~~aL~~vf~-----~p~D~ii~d~GH~aY~~~~L--tG 161 (603)
.++.++++.+.+.| |.+..+ +.. -.++-..+.-|..-+.+++....+ .+.|.++ ...|..-.+-+- .|
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vi-gmaHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVI-GMAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEE-ecCcCchHHHHHHhcC
Confidence 77888888777655 444443 222 233333356777777766655332 2456555 333333222211 24
Q ss_pred c--hhHhhHhhhc--------CC----CCCCCCC----CCCCC--CCcCcCchhhhHHHHHHHHHHHHHcCCC------C
Q 007443 162 R--RSLIHTLRKK--------DG----ISGYTSR----SESEY--DPFNAGHGCNSVSAGLGMAVARDIKGKR------E 215 (603)
Q Consensus 162 r--~~~~~~~R~~--------gg----l~g~~~~----~es~~--d~~~~G~~G~~is~A~G~A~A~~l~g~~------~ 215 (603)
. ++-|..|... +| +-|++.. ..+-+ +....+|++...++|+|+|.|.++.+.+ .
T Consensus 264 ~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~ 343 (924)
T PRK09404 264 KPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKV 343 (924)
T ss_pred CCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccce
Confidence 3 3444444322 11 1122221 01111 1224588999999999999999888776 7
Q ss_pred eEEEEEcCCcc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHH
Q 007443 216 CIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVA 291 (603)
Q Consensus 216 ~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~ 291 (603)
.+||++|||++ .+|.+||+||+|+.++.| +|+||.||++++ +++... -+++
T Consensus 344 v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~--------tT~~~~-------~~s~---------- 398 (924)
T PRK09404 344 LPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF--------TTSPPD-------DRST---------- 398 (924)
T ss_pred EEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE--------eeCHHH-------hccc----------
Confidence 88999999998 699999999999999976 999999999987 333210 0000
Q ss_pred hhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecC
Q 007443 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEEN 369 (603)
Q Consensus 292 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG 369 (603)
.....+++++|++.+ .|||+|+++++++.+.|.+.. .+||+||++.|+|-
T Consensus 399 ---------------------------~~~sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~ 450 (924)
T PRK09404 399 ---------------------------PYCTDVAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRR 450 (924)
T ss_pred ---------------------------hhHHHHHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecC
Confidence 001345678999999 999999999999988876542 47999999999999
Q ss_pred CCCCcccCCc---------hh----------------h----hcc------------------cC-CC------------
Q 007443 370 RRAEDTQKSE---------AI----------------E----KQQ------------------EG-AS------------ 389 (603)
Q Consensus 370 ~G~~~ae~~~---------~~----------------g----~~~------------------~~-~~------------ 389 (603)
+||...+... +. | .++ +. .+
T Consensus 451 ~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~ 530 (924)
T PRK09404 451 HGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYL 530 (924)
T ss_pred CCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 9987543211 00 0 000 00 00
Q ss_pred -------CCC---------------CCCC--------------------CCCCccHHHHHHHHHHHHHhcCCCEEEEecC
Q 007443 390 -------DSN---------------SLPF--------------------GNYSRTYDDCFIEALVMEAEKDKDIVVVHAG 427 (603)
Q Consensus 390 -------~~~---------------~~p~--------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aD 427 (603)
..+ .+|. +...+.|..|...++..+|++|++|++.|+|
T Consensus 531 ~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeD 610 (924)
T PRK09404 531 GHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQD 610 (924)
T ss_pred ccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeee
Confidence 000 1121 1233689999999999999999999999999
Q ss_pred CCCC-----------------cc-hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCe--EEEEe-cHHhH---HHHH
Q 007443 428 MEMD-----------------LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLK--PFCII-PSAFL---QRAY 482 (603)
Q Consensus 428 l~~~-----------------~~-l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~--P~~~~-~~~Fl---~ra~ 482 (603)
++.+ ++ +++|.++| |.|++|++|+|.+++|++.|+|+.|++ ||+++ |.+|+ |.++
T Consensus 611 v~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~ 690 (924)
T PRK09404 611 SGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVI 690 (924)
T ss_pred CCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHH
Confidence 9742 22 26788888 899999999999999999999999996 59999 99998 4779
Q ss_pred HHHHHHh-hc--CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC--CCcEEEecCCHHHHHHHHHHHHhCCC-CcEEE
Q 007443 483 DQVVNDV-DQ--QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL--PNMIVMAPSDEDELVDMVATVASIDD-RPVCF 556 (603)
Q Consensus 483 dQi~~~~-a~--~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i--Pnl~V~~Psd~~e~~~~l~~a~~~~~-~P~~i 556 (603)
||+.+.. ++ ...+++++++++ +.|..+..||+..+ .+|.+. |||+|+.|++|.|+.++|+.++.+++ +|++|
T Consensus 691 Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~ 768 (924)
T PRK09404 691 DQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVV 768 (924)
T ss_pred HHHHHHHHHHhcCccCeEEEecCc-CCCCChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 9998875 44 346899999884 54544455555777 677555 79999999999999999999765564 99999
Q ss_pred EeecCCCcc-------ccCCCCCCccccccccc---CCcE--EEEEecHHHHHHHHh
Q 007443 557 RYPRGAIVR-------TDLPGYRGIPIEVVTRH---ASCT--CLIITFEMLLCFLHV 601 (603)
Q Consensus 557 r~~r~~~~~-------~~~~~~~~~~~~~Gka~---G~dv--tIIa~G~~v~~al~~ 601 (603)
.+||.++.. .+++. +.+..+++++. ++|| +||+||.+++.++++
T Consensus 769 ~~pK~L~r~~~~~s~~~e~~~-~~f~~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a 824 (924)
T PRK09404 769 MTPKSLLRHPLAVSSLEELAE-GSFQPVIGDIDELDPKKVKRVVLCSGKVYYDLLEA 824 (924)
T ss_pred eccHHHhCCCCCCCCHHHcCC-CCceeecccccccCccceeEEEEEcCHHHHHHHHH
Confidence 999988741 12222 23545566653 7799 799999999999875
No 32
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=7e-40 Score=348.41 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=174.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcc-hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~---~~~~-l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
++++|+++|+++|.+++++||+++++++|++ +.++ +++|+++| |+||||+||+||+|+|+|+|||++|++||+++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~ 112 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF 112 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe
Confidence 4578999999999999999999999999997 2244 48999999 99999999999999999999999999999998
Q ss_pred -cHHhHHHHHHHHHHHhhcC--------CCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 -PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 -~~~Fl~ra~dQi~~~~a~~--------~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|++|++|++|||++++|++ ++|++++. .+|..|.+|+||++..+ ++||+||||+|++|+|+.|++.+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 8999999999999999985 46666664 33447889999987777 9999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCcc-ccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+++. +++|+|||+||..+.. ......+++.+++||++ |.|++||+||.++..|+|+.
T Consensus 191 ~a~~-~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa 252 (355)
T PTZ00182 191 AAIR-DPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAA 252 (355)
T ss_pred HHHh-CCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHH
Confidence 9975 6899999999876532 11112235788999985 89999999999999999974
No 33
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=8.6e-40 Score=357.34 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=177.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~----l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
.++++|++|+++|.+++++|++++++++|++...+ +.+|.++| |+||||+||+||+|+|+|+|||+.|++||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 34689999999999999999999999999976555 47899999 99999999999999999999999999999999
Q ss_pred -cHHhHHHHHHHHHHHhh--------cCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 -PSAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 -~~~Fl~ra~dQi~~~~a--------~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
++.|++|+||||+|++| ++++||+|++.++|..+ .|+ ||+.+|+++||+||||+|++|+|+.|++++|+
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 56778999999999999 89999999998877655 777 88899999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCccc-cCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~~-~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+++ ++++|+||++++..+... .+|..+++.+++||++ |+|+|||+||.+++.||++.
T Consensus 298 ~ai-~~~~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa 359 (464)
T PRK11892 298 AAI-RDPNPVIFLENEILYGQSFDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAA 359 (464)
T ss_pred HHh-hCCCcEEEEechhhcCCCCCCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHH
Confidence 996 568999997666555322 2332236788999986 99999999999999999874
No 34
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-39 Score=328.68 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=181.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcch-hhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe-c
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~---~~~~l-~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~-~ 474 (603)
+++++|++++|.++|++|++|+++|+|++ +.|+. .+|+++| ++|+|||||+|.+++|+|.|+|+.|+|||+++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 58999999999999999999999999997 45665 8999999 56999999999999999999999999999999 9
Q ss_pred HHhHHHHHHHHHHHhhc--------CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHH
Q 007443 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (603)
Q Consensus 475 ~~Fl~ra~dQi~~~~a~--------~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 546 (603)
.+|+..|+|||.|++|+ ..+|++++++.+|..+ .|.+|++..+ +++.++||++|++||+|+|+++||+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999886 7899999998766544 6899999999 889999999999999999999999999
Q ss_pred HhCCCCcEEEEeecCCCc--cccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 547 ASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~--~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
.++++||+|++++..|. ..++|. ++|.+|+|||+ |+|+|||+||.||+.+|++.
T Consensus 160 -Ird~dPViflE~k~lY~~~~~eVP~-~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AA 219 (324)
T COG0022 160 -IRDPDPVIFLEHKRLYRSFKGEVPE-EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAA 219 (324)
T ss_pred -hcCCCCEEEEecHHHhcccccCCCC-CCccccccceeeEecCCceEEEEechHHHHHHHHH
Confidence 56899999999999986 356774 58999999997 99999999999999999874
No 35
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.4e-38 Score=325.10 Aligned_cols=226 Identities=22% Similarity=0.305 Sum_probs=195.3
Q ss_pred HHHHHHHHHHh-cCCCcccCccchHHHHHHHHhhc-c--------CCCceeeecCCchH---HHHHHHhcc--hhHhhHh
Q 007443 105 EIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGR--RSLIHTL 169 (603)
Q Consensus 105 ~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf-~--------~p~D~ii~d~GH~a---Y~~~~LtGr--~~~~~~~ 169 (603)
++|+.+++|+. +++||+++++|++|++.+||+.+ + .++|+||+++||++ |++++++|+ .+.+.+|
T Consensus 2 ~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~ 81 (255)
T cd02012 2 RIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKTF 81 (255)
T ss_pred hHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHh
Confidence 68999999997 78999999999999999999743 2 23799999999998 779999997 4889999
Q ss_pred hhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEE
Q 007443 170 RKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIV 247 (603)
Q Consensus 170 R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nliv 247 (603)
|+.+ .+++||++..++++.+++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||++++|+.++ .|+++
T Consensus 82 ~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~ 161 (255)
T cd02012 82 RQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIA 161 (255)
T ss_pred cccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEE
Confidence 9987 589999998888888999999999999999999999999999999999999999999999999999999 67999
Q ss_pred EEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhh
Q 007443 248 ILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEE 327 (603)
Q Consensus 248 IlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea 327 (603)
|+|||+++++ .++... . . ..+...+|++
T Consensus 162 vvdnN~~~~~--------~~~~~~--------------------------~---------~---------~~~~~~~~~a 189 (255)
T cd02012 162 IVDSNRIQID--------GPTDDI--------------------------L---------F---------TEDLAKKFEA 189 (255)
T ss_pred EEECCCcccc--------CcHhhc--------------------------c---------C---------chhHHHHHHH
Confidence 9999999873 111000 0 0 1123578999
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhc
Q 007443 328 LGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQ 384 (603)
Q Consensus 328 ~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~ 384 (603)
|||+++ .|||||+++|.++|+++++.. ++|++|+++|.||+|++++|+.. +|+..
T Consensus 190 ~G~~~~-~v~G~d~~~l~~al~~a~~~~-~~P~~I~~~t~kg~g~~~~e~~~~~H~~~ 245 (255)
T cd02012 190 FGWNVI-EVDGHDVEEILAALEEAKKSK-GKPTLIIAKTIKGKGVPFMENTAKWHGKP 245 (255)
T ss_pred cCCeEE-EECCCCHHHHHHHHHHHHHcC-CCCEEEEEEeecccccCccCCCccccCCC
Confidence 999999 899999999999999998642 68999999999999999888765 77643
No 36
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1.3e-36 Score=330.24 Aligned_cols=509 Identities=17% Similarity=0.190 Sum_probs=353.9
Q ss_pred CCCcCccCCCChhhhccCCHHHHHHHH-HHHHHHHHHHHh-------cCCCcccCccchHHHHHHHHh-hccCC-----C
Q 007443 77 EPTPILDLVENPLRLKSLTIKELKQLA-VEIRSELSSIVS-------KTEKSLKSSLAAVELTVALHH-VFHAP-----V 142 (603)
Q Consensus 77 ~~~~~l~~i~~p~~~k~l~~~~L~~la-~~iR~~ii~~v~-------~~gGHlgsslg~~el~~aL~~-vf~~p-----~ 142 (603)
..|++.++|...+.-.---+.+|+.-. ..+|+.++.|+- .-|||.+|+.|++.++.++|. +|+.+ .
T Consensus 55 ~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~gg 134 (887)
T COG2609 55 TTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGG 134 (887)
T ss_pred CCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCC
Confidence 345666666444432222334455443 345888887763 357999999999999988775 66533 3
Q ss_pred ceeeecCCchH---HHHHHHhcc--hhHhhHhhhc---CCCCCCCCCCC-CCCCCcCcCchhhhHHHHHHHHHHHHHc--
Q 007443 143 DKILWDVGEQT---YAHKILTGR--RSLIHTLRKK---DGISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIK-- 211 (603)
Q Consensus 143 D~ii~d~GH~a---Y~~~~LtGr--~~~~~~~R~~---ggl~g~~~~~e-s~~d~~~~G~~G~~is~A~G~A~A~~l~-- 211 (603)
|.+.+ .||.+ |+..+|.|| .+++..|||. +|+++||++.. ..+..|+|++||-|.-.|+=-|.-.|+.
T Consensus 135 DlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~ 213 (887)
T COG2609 135 DLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEA 213 (887)
T ss_pred ceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHh
Confidence 65554 89988 999999999 6899999996 37999999975 4577899999988887777766665553
Q ss_pred -----CCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHH
Q 007443 212 -----GKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFR 285 (603)
Q Consensus 212 -----g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~ 285 (603)
.++.+|||++|||+|.|+..++|+..|+..+ +|++||||.|.|.+ |||....|.+.+.|+.++....|.
T Consensus 214 RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrL-----DgpVrgngkiiqelE~~FrgAGW~ 288 (887)
T COG2609 214 RGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRL-----DGPVRGNGKIIQELEGIFRGAGWN 288 (887)
T ss_pred cCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhc-----CCcccCCchhHHHHHHHhccCCce
Confidence 2478999999999999999999999999999 99999999999998 788888888888887765543332
Q ss_pred HHHHHHhhhhhc-cccchhHH---------HHhHHH---------------hhhc-cCCC--ChhhHHhhcC---CeEEe
Q 007443 286 QLREVAKGMTKR-IGRGMHEW---------AAKVDE---------------YARG-MIGP--QGSTLFEELG---LYYIG 334 (603)
Q Consensus 286 ~~r~~~~~~~~~-~g~~~~~~---------~~~~~~---------------~~~~-~~~~--~~~~lfea~G---~~~ig 334 (603)
+.+- +|+.+.++ .+.+++ |+|. +++. ....+.+.+- +-..
T Consensus 289 --------VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L- 359 (887)
T COG2609 289 --------VIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL- 359 (887)
T ss_pred --------EEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-
Confidence 1111 12222211 111222 2221 1111 1122222211 0011
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcc-cCCc-hh-hh----------------c-----ccCCC-
Q 007443 335 PVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDT-QKSE-AI-EK----------------Q-----QEGAS- 389 (603)
Q Consensus 335 ~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~a-e~~~-~~-g~----------------~-----~~~~~- 389 (603)
.-.|||+..+++|+++|++.+ ++|++|.++|+||.|...+ |... .| +| + +..-|
T Consensus 360 ~rGGHD~~ki~aA~~~A~~~k-g~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy 438 (887)
T COG2609 360 NRGGHDPEKVYAAFKKAQEHK-GRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPY 438 (887)
T ss_pred hcCCCCHHHHHHHHHHHhcCC-CCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCc
Confidence 236999999999999999872 5899999999999998633 3222 11 11 0 00000
Q ss_pred -------------------------C-CC----C--CCC----------CCCCccHHHHHHHHHHHHHhcC---CCEEEE
Q 007443 390 -------------------------D-SN----S--LPF----------GNYSRTYDDCFIEALVMEAEKD---KDIVVV 424 (603)
Q Consensus 390 -------------------------~-~~----~--~p~----------~~~~~s~~~a~~~aL~~~~~~d---~~vvvi 424 (603)
. ++ . +|. ..+.+|++.||.+.|.++++++ ++||-+
T Consensus 439 ~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpi 518 (887)
T COG2609 439 YHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPI 518 (887)
T ss_pred CCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccc
Confidence 0 00 1 121 1346899999999999999853 689999
Q ss_pred ecCCCCCcchhhhhHh----------C---------------CCCeeecchhhHHHHHH--HHHHhc--CC--CeEEEEe
Q 007443 425 HAGMEMDLSLQLFQEK----------F---------------PERYFDVGMAEQHAVTF--SAGLAC--GG--LKPFCII 473 (603)
Q Consensus 425 ~aDl~~~~~l~~f~~~----------f---------------p~R~id~GIaE~~~vg~--AaGlA~--~G--~~P~~~~ 473 (603)
.+|.+.+||+++|.++ | .+++++-||+|.++++. |+|.+. .| ++||.-.
T Consensus 519 ipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~ 598 (887)
T COG2609 519 IPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY 598 (887)
T ss_pred cCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeee
Confidence 9999999999775442 1 36899999999999987 555554 35 7999999
Q ss_pred cHHh-HHHHHHHHHHHhhcCCCCeEEEEeCCCC-C-CCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC-
Q 007443 474 PSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-V-GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI- 549 (603)
Q Consensus 474 ~~~F-l~ra~dQi~~~~a~~~lpV~~~~~~~G~-~-g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~- 549 (603)
|+.| +||..|-++. +|.|...--+++..+|. + ...|-+|+.....-+-..+||+..+.|+.+.|+.-+|+..+.+
T Consensus 599 YsmFgfqRigD~~wa-A~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rm 677 (887)
T COG2609 599 YSMFGFQRIGDLLWA-AGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRM 677 (887)
T ss_pred echhhhhhHHHHHHH-HHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHH
Confidence 9999 8999999876 58888885555555555 3 5588899887765555689999999999999999999988753
Q ss_pred -----CCCcEEEEeecCCCccccCCCC-------CCcccccccc-cCCcEEEEEecHHHHHHHHhh
Q 007443 550 -----DDRPVCFRYPRGAIVRTDLPGY-------RGIPIEVVTR-HASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 550 -----~~~P~~ir~~r~~~~~~~~~~~-------~~~~~~~Gka-~G~dvtIIa~G~~v~~al~~~ 602 (603)
.+.-.||++.-.+++.-..|.+ +-|.++-+.. .+.+|-|+++|..+..|+++.
T Consensus 678 y~~~qe~v~yYlt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~Aa 743 (887)
T COG2609 678 YGEGQENVFYYITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAA 743 (887)
T ss_pred hccCcCCcEEEEEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHH
Confidence 2335777776666642222211 2344432222 257999999999999888764
No 37
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=5.4e-38 Score=297.99 Aligned_cols=154 Identities=48% Similarity=0.738 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHH
Q 007443 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485 (603)
Q Consensus 406 a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi 485 (603)
+++++|.+++++|++++++++|++.+.++.+|+++||+||||+||+||+|+|+|+|||+.|++||+++|+.|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999988899999999
Q ss_pred HHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 486 VNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 486 ~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
+++++++++||+++++++|+ .|.+|+|||+.+|++++|++||++|++|+|++|+++++++++. +++|+|||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999998 4689999999999999999999999999999999999999975 57899999987
No 38
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.8e-36 Score=347.76 Aligned_cols=356 Identities=14% Similarity=0.155 Sum_probs=268.7
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCC------CCeEEEEEcCCcc-ccchHHHHHHHhhhcCCCE---EEEEECCCCCcCC
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGK------RECIVTVISNGTT-MAGQAYEAMSNAGYLDSNM---IVILNDSRHSLHP 258 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~------~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nl---ivIlndN~~si~~ 258 (603)
+..+|++...++|+|+|.|.+.++. +..+||++|||++ .+|.++|+||+|+.++.|+ |+||.||++++
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~-- 389 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGF-- 389 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE--
Confidence 4677899999999999999887754 5678999999997 6999999999999999996 99999999987
Q ss_pred CccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCC
Q 007443 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG 338 (603)
Q Consensus 259 t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDG 338 (603)
+++... . .+ .+....+.+++|++.+ .|||
T Consensus 390 ------tT~~~~-------~-~s------------------------------------~~~~sd~Ak~ygiP~~-~VDG 418 (929)
T TIGR00239 390 ------TTNPLD-------A-RS------------------------------------TPYCSDLAKMIQAPIF-HVNA 418 (929)
T ss_pred ------EEcHHH-------h-cC------------------------------------ccCHHHHheecCCCEE-EECC
Confidence 222200 0 00 0001345678999999 9999
Q ss_pred CCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccCC----------------c---------hhh----hcc--
Q 007443 339 HNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQKS----------------E---------AIE----KQQ-- 385 (603)
Q Consensus 339 hD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~~----------------~---------~~g----~~~-- 385 (603)
+|+++++.+.+.|.+.. .+||+||++.|+|-+||...+.. | ..| .++
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999988876542 47999999999999998654321 1 000 000
Q ss_pred ----------------cCCC--C------------------CC---------------CCCC------------------
Q 007443 386 ----------------EGAS--D------------------SN---------------SLPF------------------ 396 (603)
Q Consensus 386 ----------------~~~~--~------------------~~---------------~~p~------------------ 396 (603)
+..+ . .+ ..|.
T Consensus 499 i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~ 578 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKA 578 (929)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHH
Confidence 0000 0 00 0111
Q ss_pred ---CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCC-c----------------c-hhhhhHhC-CCCeeecchhhHH
Q 007443 397 ---GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD-L----------------S-LQLFQEKF-PERYFDVGMAEQH 454 (603)
Q Consensus 397 ---~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~-~----------------~-l~~f~~~f-p~R~id~GIaE~~ 454 (603)
+.+.++|.+|...++..+|++|++|+++|+|++.+ | + +++|.++| +.|++|++|+|.+
T Consensus 579 ~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a 658 (929)
T TIGR00239 579 MAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEES 658 (929)
T ss_pred HhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHH
Confidence 01236899999999999999999999999999753 2 2 36788888 8999999999999
Q ss_pred HHHHHHHHhcCCCeE--EEEe-cHHhH---HHHHHHHHHH-hhc--CCCCeEEEEeCCCCCCCCCCCCCChhhHHHH--h
Q 007443 455 AVTFSAGLACGGLKP--FCII-PSAFL---QRAYDQVVND-VDQ--QRLPVRFVITSAGLVGSDGPTQCGAFDITFM--S 523 (603)
Q Consensus 455 ~vg~AaGlA~~G~~P--~~~~-~~~Fl---~ra~dQi~~~-~a~--~~lpV~~~~~~~G~~g~dG~tH~~~~dia~l--r 523 (603)
++|++.|+|+.|.+| |+++ |.+|+ |.++||+.+. .++ ...+++++.++ |+.|..+..|++..+ .+| .
T Consensus 659 ~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G~~g~g~~hsS~~~E-~~lql~ 736 (929)
T TIGR00239 659 VLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPH-GYEGQGPEHSSGRLE-RFLQLA 736 (929)
T ss_pred HHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCCchhhccCHH-HHHHHh
Confidence 999999999999777 4888 99998 4789999887 354 44688999887 455555566666777 666 7
Q ss_pred cCCCcEEEecCCHHHHHHHHH-HHHhCC-CCcEEEEeecCCCcc-c------cCCCCCCccccccccc-------CCcEE
Q 007443 524 CLPNMIVMAPSDEDELVDMVA-TVASID-DRPVCFRYPRGAIVR-T------DLPGYRGIPIEVVTRH-------ASCTC 587 (603)
Q Consensus 524 ~iPnl~V~~Psd~~e~~~~l~-~a~~~~-~~P~~ir~~r~~~~~-~------~~~~~~~~~~~~Gka~-------G~dvt 587 (603)
+.|||+|+.|++|.|++++|+ +++ ++ ++|++|.+||.++.. . ++|.+ .+..++++.. ..+++
T Consensus 737 ~~~gl~Vv~pstpad~~~lLrrqa~-r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~~~~~~~~~~~~~v~ 814 (929)
T TIGR00239 737 AEQNMQVCVPTTPAQVFHILRRQAL-RGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGEIEESGLSLDPEGVK 814 (929)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHH-hCCCCCEEEeccHhhhcCccccCccccCCCC-CcccccccccccccccCccCCc
Confidence 899999999999999999999 574 55 899999999988741 1 45533 5666776522 23676
Q ss_pred -EEEecHHHHHHHHh
Q 007443 588 -LIITFEMLLCFLHV 601 (603)
Q Consensus 588 -IIa~G~~v~~al~~ 601 (603)
+|.++.+|+.+|++
T Consensus 815 ~vv~~sg~v~~~l~~ 829 (929)
T TIGR00239 815 RLVLCSGKVYYDLHE 829 (929)
T ss_pred EEEEECchHHHHHHH
Confidence 67777788887764
No 39
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=8e-36 Score=285.79 Aligned_cols=153 Identities=26% Similarity=0.379 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCC---c-chhhhhHhCCC-CeeecchhhHHHHHHHHHHhcCCCeEEEEe-cHHhH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMD---L-SLQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFL 478 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~---~-~l~~f~~~fp~-R~id~GIaE~~~vg~AaGlA~~G~~P~~~~-~~~Fl 478 (603)
++++++|.+++++|++++++++|++.+ + .+++|+++||+ ||||+||+||+|+|+|+|||++|++||+++ |++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 478999999999999999999999642 3 35889999999 999999999999999999999999999995 99999
Q ss_pred HHHHHHHHHHhhcC--------CCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCC
Q 007443 479 QRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (603)
Q Consensus 479 ~ra~dQi~~~~a~~--------~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~ 550 (603)
.|++|||++++|++ ++||++++.++| .+.+|+||+ .+|+++||+||||+|++|+|+.|+++++++++. .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999986 599999997766 467899976 577899999999999999999999999999975 6
Q ss_pred CCcEEEEeec
Q 007443 551 DRPVCFRYPR 560 (603)
Q Consensus 551 ~~P~~ir~~r 560 (603)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 8999999986
No 40
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.6e-35 Score=285.42 Aligned_cols=165 Identities=37% Similarity=0.501 Sum_probs=145.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhC---CCCeeecchhhHHHHHHHHHHhcCC--CeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF---PERYFDVGMAEQHAVTFSAGLACGG--LKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~f---p~R~id~GIaE~~~vg~AaGlA~~G--~~P~~~~ 473 (603)
++++++++++++|.+++++|++|+++++|+++++....+.+.+ |+||||+||+||+|+|+|+|||+.| ++||+.+
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~ 80 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVEST 80 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEee
Confidence 3579999999999999999999999999999776665555554 5599999999999999999999999 6677777
Q ss_pred cHHhHH----HHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh
Q 007443 474 PSAFLQ----RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (603)
Q Consensus 474 ~~~Fl~----ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~ 548 (603)
|++|+. |+++|++++++++++||. ++.++|+ .|.+|+|||+.+|+++|+++|||+|++|+|+.|++++|++++.
T Consensus 81 f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~ 159 (178)
T PF02779_consen 81 FADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIR 159 (178)
T ss_dssp EGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 999998 999999999999999999 7788888 6889999999999999999999999999999999999999987
Q ss_pred C-CCCcEEEEeecCCCc
Q 007443 549 I-DDRPVCFRYPRGAIV 564 (603)
Q Consensus 549 ~-~~~P~~ir~~r~~~~ 564 (603)
. +++|+|||++|++++
T Consensus 160 ~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 160 RESDGPVYIREPRGLYP 176 (178)
T ss_dssp SSSSSEEEEEEESSEES
T ss_pred hCCCCeEEEEeeHHhCC
Confidence 4 689999999998764
No 41
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.98 E-value=1.6e-31 Score=256.14 Aligned_cols=158 Identities=36% Similarity=0.503 Sum_probs=139.4
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEecCCCCCcchhhhhHhCCCC-------eeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 402 TYDDCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQEKFPER-------YFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 402 s~~~a~~~aL~~~~~~d~-~vvvi~aDl~~~~~l~~f~~~fp~R-------~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||+| |+|+||+||+|+++|+|||+.|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 478999999999999955 99999999987776653 5667765 99999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCC
Q 007443 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 552 (603)
|+.|+.|++||+++++++++.|+++... +|+ .|.+|+|||+.+|+++|++|||++|++|+|+.|+++++++++...++
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~-~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~ 158 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHD-SGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDG 158 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEec-CccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999997776566555443 345 68899999999999999999999999999999999999999865578
Q ss_pred cEEEEeecC
Q 007443 553 PVCFRYPRG 561 (603)
Q Consensus 553 P~~ir~~r~ 561 (603)
|+|||++|+
T Consensus 159 p~~i~~~~~ 167 (168)
T smart00861 159 PPVIRLERK 167 (168)
T ss_pred CEEEEecCC
Confidence 999999875
No 42
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.98 E-value=4.8e-32 Score=267.53 Aligned_cols=200 Identities=19% Similarity=0.316 Sum_probs=179.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcch-hhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~---~~~~l-~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
+.++.|+|+++++.++|++|++|++++++++ +++++ ++|.++| +.|++||||+|.+..|+|.|.|+.|++|||+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 5689999999999999999999999999997 45666 8899999 88999999999999999999999999999998
Q ss_pred -cHHhHHHHHHHHHHHhhc--------CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 -~~~Fl~ra~dQi~~~~a~--------~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
-..|+..|+|||.|.+++ +++|++|+++. |....-|++|++.+. +|+.++||++|++|++++|++++|+
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 778899999999999875 78999999975 665558999999999 7889999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCc-cccCCC---CCCccccccccc----CCcEEEEEecHHHHHHHHh
Q 007443 545 TVASIDDRPVCFRYPRGAIV-RTDLPG---YRGIPIEVVTRH----ASCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~~~---~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~ 601 (603)
.| .++++||+|+++--+|- ..+++. .++|.+|+|||+ |+|+|||++..+|..|||+
T Consensus 191 aA-IRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leA 254 (359)
T KOG0524|consen 191 AA-IRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEA 254 (359)
T ss_pred Hh-ccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHH
Confidence 99 67999999999887763 223332 247999999997 9999999999999999986
No 43
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.95 E-value=6.2e-29 Score=242.16 Aligned_cols=199 Identities=21% Similarity=0.271 Sum_probs=177.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCC--cc-hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe-
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD--LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~--~~-l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~- 473 (603)
+++..-++++++|.-.++.||+.+++++|++-+ |. ..+|+++| .+|+|||+++||+++|+..|+|..|-+.|++|
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 567889999999999999999999999999732 32 36899999 79999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhcC--------C-CCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQQ--------R-LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~--------~-lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|++|+..|||||.|.+|+. + -.++++.+ .|.+|..|.+|+++.+ +++.+.||++|+.|..|.|++++|-
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~p-~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAP-WGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEecc-ccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 9999999999999998862 2 24566665 4778999999999999 8999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCcc--ccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHh
Q 007443 545 TVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~ 601 (603)
.+ .++++|++|++||.+|.. .++|. .+|.+|+++++ |+|+|+|+||..|+.++|+
T Consensus 197 sc-irdpnp~iffepk~lyr~a~edvp~-~dy~iplsqaevireg~ditlv~wgtqvh~i~e~ 257 (362)
T KOG0525|consen 197 SC-IRDPNPCIFFEPKILYRQAVEDVPE-GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQ 257 (362)
T ss_pred ee-ccCCCceEEechHHHHHHhhhhCCC-CCccccccHHHHhhcCCceEEEEcchhhHHHHHH
Confidence 99 579999999999998852 46775 48999999997 9999999999999999886
No 44
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.91 E-value=2.5e-23 Score=218.35 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=162.0
Q ss_pred ccCCHHHHHHHHHHH---HHHHHHHHh-----cCCCcccCccchHHHHHHHHhhccCCCceeee---cCCchH-------
Q 007443 92 KSLTIKELKQLAVEI---RSELSSIVS-----KTEKSLKSSLAAVELTVALHHVFHAPVDKILW---DVGEQT------- 153 (603)
Q Consensus 92 k~l~~~~L~~la~~i---R~~ii~~v~-----~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~---d~GH~a------- 153 (603)
-+++.++|..+.+.| |.+--.+.. +.+|-..+++|...+.++.-..++...|.++- |.||..
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~ 101 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLK 101 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHH
Confidence 368888888887665 666555543 34567789999988888776666544476663 233322
Q ss_pred HHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCC-eEEEEEcCCccccchHH
Q 007443 154 YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRE-CIVTVISNGTTMAGQAY 232 (603)
Q Consensus 154 Y~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~-~Vv~viGDGal~eG~~~ 232 (603)
.....+.|+....+.-| +.+.|-... .......+|++|++++.|+|+|+|.|+++++. .++|++|||+.++|.+|
T Consensus 102 ~~~a~~~G~~~g~~kGr---~~~~h~~~~-~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~Fh 177 (358)
T COG1071 102 EIMAELLGKATGPCKGR---GGSMHYSDK-EKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFH 177 (358)
T ss_pred HHHHHHhccccCCCCCC---CCccccccc-ccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHH
Confidence 11122334433332222 233332211 11234578999999999999999999999555 99999999999999999
Q ss_pred HHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHh
Q 007443 233 EAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (603)
Q Consensus 233 EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~ 312 (603)
|+||+|+.|+.|+||+|+||+|+| |.|... ++. . +
T Consensus 178 EalN~A~v~klPvvf~ieNN~yAi--------Svp~~~--------q~~------------------~---------~-- 212 (358)
T COG1071 178 EALNFAAVWKLPVVFVIENNQYAI--------SVPRSR--------QTA------------------A---------E-- 212 (358)
T ss_pred HHHHHHHHhcCCEEEEEecCCcee--------ecchhh--------ccc------------------c---------h--
Confidence 999999999999999999999998 333210 000 0 0
Q ss_pred hhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccC
Q 007443 313 ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQK 377 (603)
Q Consensus 313 ~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~ 377 (603)
..+....++|++.+ .|||+|+.+++++.++|.+.. .+||+|||+.|+|-.||+.++.
T Consensus 213 -------~~~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd 271 (358)
T COG1071 213 -------IIAARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDD 271 (358)
T ss_pred -------hHHhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCC
Confidence 00224567999999 899999999999998876643 4789999999999999988743
No 45
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.89 E-value=1.3e-21 Score=207.75 Aligned_cols=230 Identities=16% Similarity=0.121 Sum_probs=160.3
Q ss_pred ChhhhccCCHHHHHHHHHHH---HHHHHHHHh--cCC---CcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHH
Q 007443 87 NPLRLKSLTIKELKQLAVEI---RSELSSIVS--KTE---KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (603)
Q Consensus 87 ~p~~~k~l~~~~L~~la~~i---R~~ii~~v~--~~g---GHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~ 158 (603)
.+.+.+.++.++|.++.+.| |..-..+.. ++| |.+.++.|...+.+++-..++ |.|.++.. |...+|.+
T Consensus 10 ~~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l 86 (341)
T CHL00149 10 TNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLA-ETDYVCST--YRDHVHAL 86 (341)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCC-CCCEEEcc--cccHHHHH
Confidence 35667788999988887665 433333332 333 677788998888777766663 56877753 33334433
Q ss_pred Hhcc--hhHhhHhhhc--C-----CCCCCCCCCCCCCCC-cCcCchhhhHHHHHHHHHHHHHcC-------CCCeEEEEE
Q 007443 159 LTGR--RSLIHTLRKK--D-----GISGYTSRSESEYDP-FNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVI 221 (603)
Q Consensus 159 LtGr--~~~~~~~R~~--g-----gl~g~~~~~es~~d~-~~~G~~G~~is~A~G~A~A~~l~g-------~~~~Vv~vi 221 (603)
-.|- .+-|..+... | +.+.|.... +... -..|++|.++++|+|+|+|.++++ +++.|||++
T Consensus 87 a~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~--~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~ 164 (341)
T CHL00149 87 SKGVPPKNVMAELFGKETGCSRGRGGSMHIFSA--PHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFF 164 (341)
T ss_pred HcCCCHHHHHHHHcCCCCCCCCCCCCCccccch--hcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEe
Confidence 3442 2222222211 1 123344322 2222 357899999999999999998877 578999999
Q ss_pred cCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccc
Q 007443 222 SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301 (603)
Q Consensus 222 GDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~ 301 (603)
|||++++|++||+||+|+.++.|+|+||.||++++. .+... +
T Consensus 165 GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~--------~~~~~--------~---------------------- 206 (341)
T CHL00149 165 GDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIG--------MAHHR--------S---------------------- 206 (341)
T ss_pred CCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeee--------cchhh--------e----------------------
Confidence 999999999999999999999999999999998872 11100 0
Q ss_pred hhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHH----HHhcCCCCcEEEEEEeecCCCCCccc
Q 007443 302 MHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE----VASLGSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~----a~~~~~~gP~lI~v~T~kG~G~~~ae 376 (603)
...+++..++++||++.+ .|||+|+.++++++++ +++. ++|+||++.|+|.+|+..++
T Consensus 207 --------------~~~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~~--~gP~lIev~tyR~~gHs~~D 268 (341)
T CHL00149 207 --------------TSIPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQG--DGPTLIEALTYRFRGHSLAD 268 (341)
T ss_pred --------------eCCccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEEEecCCCcCCCC
Confidence 001233567899999999 9999999988765554 4443 78999999999999998763
No 46
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.89 E-value=1.1e-21 Score=209.15 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=156.5
Q ss_pred ccCCHHHHHHHHHHH---HHHHHHHHh--cCC---CcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc-
Q 007443 92 KSLTIKELKQLAVEI---RSELSSIVS--KTE---KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR- 162 (603)
Q Consensus 92 k~l~~~~L~~la~~i---R~~ii~~v~--~~g---GHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr- 162 (603)
..++.++|.++.+.| |..-..+.. ++| |....+.|..-+.+++-..++ |.|.++.. |...+|.+-.|-
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~-~~D~~~~~--yR~hg~~la~G~~ 101 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAIT-KEDAIITA--YRDHCTHLGRGGT 101 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcC-CCCEEEec--hhhHHHHHHcCCC
Confidence 467888888877665 444433333 343 677778998888777666653 67877753 333344444443
Q ss_pred -hhHhhHhhhc--C-----CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHH
Q 007443 163 -RSLIHTLRKK--D-----GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (603)
Q Consensus 163 -~~~~~~~R~~--g-----gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EA 234 (603)
.+-|..+... | +.+.|.... .......+|++|++++.|+|+|+|.++++++..++|++|||++++|.+|||
T Consensus 102 ~~~~~ae~~g~~~g~~~GrggsmH~~~~-~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 102 VLEVFAELMGRKDGCSRGKGGSMHFYKK-DANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred HHHHHHHHcCCCCCCCCCCCCcccccch-hcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 2223222211 1 123343221 122234789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhh
Q 007443 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (603)
Q Consensus 235 ln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (603)
||+|+.++.|+|+||+||+|++ +++.... . +...+
T Consensus 181 ln~A~~~~lPvvfvveNN~~ai--------st~~~~~-------~----------------------------~~~~~-- 215 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGM--------GTAEWRA-------A----------------------------KSPAY-- 215 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEec--------cCchhhh-------c----------------------------cchHH--
Confidence 9999999999999999999987 2322110 0 00000
Q ss_pred ccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC-CCCcEEEEEEeecCCCCCccc
Q 007443 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 315 ~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~-~~gP~lI~v~T~kG~G~~~ae 376 (603)
. -++++++.+ .|||+|+.+++++++++.+.. .+||++|+++|+|..||...+
T Consensus 216 -------~--~~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 216 -------Y--KRGDYVPGL-KVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred -------H--HhhcCCCeE-EECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCC
Confidence 0 123467778 899999999999999876531 278999999999999997654
No 47
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.88 E-value=9.9e-21 Score=205.64 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=155.6
Q ss_pred cCCHHHHHHHHHHH---HHHHHHHHh--cCC---CcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc--
Q 007443 93 SLTIKELKQLAVEI---RSELSSIVS--KTE---KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR-- 162 (603)
Q Consensus 93 ~l~~~~L~~la~~i---R~~ii~~v~--~~g---GHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr-- 162 (603)
+++.++|.++.+.| |..--.+.. ++| |....+.|...+.+++-..++ |.|.++. .|...+|.+..|-
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~-~~D~v~~--~yR~h~~~La~G~~~ 158 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KDDSVVS--TYRDHVHALSKGVPA 158 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcC-CCCEEEc--cCcChHHhhhcCCCH
Confidence 67888888887654 443333333 333 566667898888787776664 4677764 2333344444443
Q ss_pred hhHhhHhhhc--C---C--CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC-------CCCeEEEEEcCCcccc
Q 007443 163 RSLIHTLRKK--D---G--ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTMA 228 (603)
Q Consensus 163 ~~~~~~~R~~--g---g--l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g-------~~~~Vv~viGDGal~e 228 (603)
.+-|..+... | | -+.|.... .....-..|++|++++.|+|+|+|.++++ +++.|||++|||++++
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~-~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~e 237 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNN 237 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCch-hhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcccc
Confidence 2333333221 1 1 12333221 11223457889999999999999998875 4789999999999999
Q ss_pred chHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHh
Q 007443 229 GQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (603)
Q Consensus 229 G~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (603)
|++||+||+|+.++.|+|+||.||+|++. .+.... .
T Consensus 238 G~f~EaLn~A~~~~LPvIfVV~NN~yaig--------~~~~~~--------------------------t---------- 273 (433)
T PLN02374 238 GQFFECLNMAALWKLPIVFVVENNLWAIG--------MSHLRA--------------------------T---------- 273 (433)
T ss_pred ChHHHHHHHHHHhCCCEEEEEeCCCEeec--------ceeeec--------------------------c----------
Confidence 99999999999999999999999998762 111000 0
Q ss_pred HHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHH----HHhcCCCCcEEEEEEeecCCCCCccc
Q 007443 309 VDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE----VASLGSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 309 ~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~----a~~~~~~gP~lI~v~T~kG~G~~~ae 376 (603)
-.++...+++++|++.+ .|||+|+.++++++++ +++. ++|+||++.|+|.+|+...+
T Consensus 274 --------~~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~g--~gP~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 274 --------SDPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFRGHSLAD 334 (433)
T ss_pred --------CCCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEecCCcCCCC
Confidence 01223566889999999 8999999998865544 4444 79999999999999998764
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.87 E-value=8.5e-21 Score=197.93 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=151.9
Q ss_pred CCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc--hhHhhHhhhc--C-----CCCCCCCCCCCCCCC
Q 007443 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR--RSLIHTLRKK--D-----GISGYTSRSESEYDP 188 (603)
Q Consensus 118 gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr--~~~~~~~R~~--g-----gl~g~~~~~es~~d~ 188 (603)
.|...++.|...+.+++-..++ |.|.++. .|...+|.+..|. .+-|..+... | +.++|.... .....
T Consensus 25 ~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~-~~~~~ 100 (293)
T cd02000 25 GGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDK-EKNFF 100 (293)
T ss_pred ccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCch-hcCcc
Confidence 3556678999999888888875 6787664 4666777777765 3344333221 1 123343322 23445
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
..+|++|+++++|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.++.|+++||+||++++. ++.
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~--------~~~ 172 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAIS--------TPT 172 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeecc--------CCH
Confidence 689999999999999999999999999999999999999999999999999999999999999998762 221
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.. + . -.+++..+++++|++++ .|||+|++++++++
T Consensus 173 ~~--------~------------------~------------------~~~~~~~~a~a~G~~~~-~Vdg~d~~~v~~a~ 207 (293)
T cd02000 173 SR--------Q------------------T------------------AGTSIADRAAAYGIPGI-RVDGNDVLAVYEAA 207 (293)
T ss_pred HH--------H------------------h------------------CCccHHHHHHhCCCCEE-EECCCCHHHHHHHH
Confidence 00 0 0 01234677899999999 99999999999988
Q ss_pred HHHHhc--CCCCcEEEEEEeecCCCCCc
Q 007443 349 QEVASL--GSMGPVLVHVVTEENRRAED 374 (603)
Q Consensus 349 ~~a~~~--~~~gP~lI~v~T~kG~G~~~ 374 (603)
+++.+. ..++|+||++.|++.+|+..
T Consensus 208 ~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 208 KEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 886542 13789999999999999984
No 49
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.86 E-value=1.5e-20 Score=196.58 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=143.2
Q ss_pred cCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc--hhHhhHhhhc-CCC--CCC-CCCCCCC-CCC
Q 007443 116 KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR--RSLIHTLRKK-DGI--SGY-TSRSESE-YDP 188 (603)
Q Consensus 116 ~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr--~~~~~~~R~~-ggl--~g~-~~~~es~-~d~ 188 (603)
+..|...++.|...+.+++...++ |.|.++.. |..-++.+..|- .+-|..+... .|. +.+ ....... ...
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l~-~~D~v~~~--yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAALR-PGDWVFPY--YRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHSC-TTSEEEEC--STTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhcc-CCCEEEec--ccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 344666788888888787777664 55887754 444344444443 2333333322 111 122 1101111 233
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
..++++|.+++.|+|+|+|.++++++..++|++|||++++|.+||+||+|+.++.|+||||.||+|+| +++.
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~ai--------st~~ 169 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAI--------STPT 169 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEET--------TEEH
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCccc--------ccCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999998 3333
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
... .. .++...+.+++|++.+ .|||+|+.++++++
T Consensus 170 ~~~--------------------------~~------------------~~~~~~~a~~~gip~~-~VDG~D~~av~~a~ 204 (300)
T PF00676_consen 170 EEQ--------------------------TA------------------SPDIADRAKGYGIPGI-RVDGNDVEAVYEAA 204 (300)
T ss_dssp HHH--------------------------CS------------------SSTSGGGGGGTTSEEE-EEETTSHHHHHHHH
T ss_pred ccc--------------------------cc------------------ccchhhhhhccCCcEE-EECCEeHHHHHHHH
Confidence 100 00 1112456788999999 99999999999998
Q ss_pred HHHHhcC--CCCcEEEEEEeecCCCCCccc
Q 007443 349 QEVASLG--SMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 349 ~~a~~~~--~~gP~lI~v~T~kG~G~~~ae 376 (603)
++|.+.. .+||+||+++|+|-.|+...+
T Consensus 205 ~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 205 KEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 8876543 479999999999999998775
No 50
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.86 E-value=5.7e-20 Score=195.37 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=161.0
Q ss_pred ChhhhccCCHHHHHHHHHHH---HHHHHHHHh--cCC--CcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHH
Q 007443 87 NPLRLKSLTIKELKQLAVEI---RSELSSIVS--KTE--KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (603)
Q Consensus 87 ~p~~~k~l~~~~L~~la~~i---R~~ii~~v~--~~g--GHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~L 159 (603)
+|....+++.++|.++.+.+ |..-..+.. ++| |-..++.|..-+.+++-..++ |.|.++. .|...+|.+.
T Consensus 14 ~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~h~~~l~ 90 (341)
T TIGR03181 14 DPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALR-KDDWVFP--SYRDHAAMLA 90 (341)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcC-CCCEEEc--chhhHHHHHH
Confidence 44444567888888877654 444333333 333 334467888877777766664 5787664 2555566666
Q ss_pred hcc--hhHhhHhhhc-CCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHH
Q 007443 160 TGR--RSLIHTLRKK-DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS 236 (603)
Q Consensus 160 tGr--~~~~~~~R~~-ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln 236 (603)
.|. .+-|..+... +|.. ++ . .....-.+|++|.+++.|+|+|+|.++.++++.|||++|||++++|.++|+||
T Consensus 91 ~G~~~~~~~ae~~g~~~g~~-~~-~--~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~ 166 (341)
T TIGR03181 91 RGVPLVEILLYWRGDERGSW-DP-E--GVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALN 166 (341)
T ss_pred cCCCHHHHHHHhcCcCcCCC-Cc-h--hcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHH
Confidence 664 3334444332 2221 11 1 12223457889999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc
Q 007443 237 NAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (603)
Q Consensus 237 ~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (603)
+|+.++.|+++||.||++.+. ++... + .
T Consensus 167 tA~~~~LPvi~Vv~NN~~~~~--------~~~~~--------------------------~------------------~ 194 (341)
T TIGR03181 167 FAGVFKAPVVFFVQNNQWAIS--------VPRSK--------------------------Q------------------T 194 (341)
T ss_pred HHhccCCCEEEEEECCCCccc--------cchhh--------------------------h------------------h
Confidence 999999999999999998762 11100 0 0
Q ss_pred CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCccc
Q 007443 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 317 ~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae 376 (603)
-.+++..++++||++++ .|||+|..+++++++++.+.. .++|++|+++|++-.|+...+
T Consensus 195 ~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 195 AAPTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred CCcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCC
Confidence 01234677899999999 899999988777666544321 379999999999999988764
No 51
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.86 E-value=5.8e-20 Score=193.41 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=143.1
Q ss_pred CcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc--hhHhhHhhhc--C---C--CCCCCCCCCCCCCCc
Q 007443 119 KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR--RSLIHTLRKK--D---G--ISGYTSRSESEYDPF 189 (603)
Q Consensus 119 GHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr--~~~~~~~R~~--g---g--l~g~~~~~es~~d~~ 189 (603)
|+..++.|...+.++.-..+ .|.|.++.. |...+|.+-.|- .+-|..+... | | .+.|....+ .....
T Consensus 32 ~~~~~~~GqEa~~vg~~~al-~~~D~~~~~--yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~-~~~~~ 107 (315)
T TIGR03182 32 GFCHLYIGQEAVAVGLIAAL-KPDDYVITS--YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDRE-KNFYG 107 (315)
T ss_pred cccCCCCChHHHHHHHHHhC-CCCCEEEec--hhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchh-hCccc
Confidence 56667889887777766665 356866642 333344444442 2222222211 1 1 122332211 22234
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccch
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg 269 (603)
..|++|.++++|+|+|+|.+++++++.|||++|||++++|.+||+||+|+.++.|+++||.||+|++ +++..
T Consensus 108 ~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~--------s~~~~ 179 (315)
T TIGR03182 108 GHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAM--------GTSVE 179 (315)
T ss_pred CcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccc--------cCCHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999876 22220
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
. . . -.+++..+.++||++++ .|||+|+.+++++++
T Consensus 180 ~-------~-------------------~------------------~~~~~a~~A~a~G~~~~-~Vdg~d~~av~~a~~ 214 (315)
T TIGR03182 180 R-------S-------------------S------------------SVTDLYKRGESFGIPGE-RVDGMDVLAVREAAK 214 (315)
T ss_pred H-------H-------------------h------------------CCcCHHHHHHhCCCCEE-EECCCCHHHHHHHHH
Confidence 0 0 0 01234677899999999 899999999998887
Q ss_pred HHHhc--CCCCcEEEEEEeecCCCCCccc
Q 007443 350 EVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 350 ~a~~~--~~~gP~lI~v~T~kG~G~~~ae 376 (603)
++.+. ..++|++|++.|++..|+...+
T Consensus 215 ~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 243 (315)
T TIGR03182 215 EAVERARSGKGPILLEMKTYRFRGHSMSD 243 (315)
T ss_pred HHHHHHHccCCCEEEEEeCCcCCCCCCCC
Confidence 76542 1378999999999999997653
No 52
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.78 E-value=2.2e-18 Score=171.59 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=123.3
Q ss_pred CCchH---HHHHHHhcc--------h---hHhh-Hhhh---cCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHH
Q 007443 149 VGEQT---YAHKILTGR--------R---SLIH-TLRK---KDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDI 210 (603)
Q Consensus 149 ~GH~a---Y~~~~LtGr--------~---~~~~-~~R~---~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l 210 (603)
.||.+ |+..+|.|. + +.|. .||| .||+++|+.+ +.++...++|++|++++.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 36655 666777771 1 1243 3455 4678999986 678888999999999999999974
Q ss_pred cCCCCeEEEEEcCCccccchH---HHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHH
Q 007443 211 KGKRECIVTVISNGTTMAGQA---YEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQ 286 (603)
Q Consensus 211 ~g~~~~Vv~viGDGal~eG~~---~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~ 286 (603)
++++.+|+|++|||++.+|.. ||+.+++...+ .||+.|+++|+++|+ .++.- .+
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~--------~pt~~-----~~--------- 134 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIS--------NPTIL-----AR--------- 134 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCccc--------CCccc-----cc---------
Confidence 478899999999999999995 99999998777 999999999999983 22200 00
Q ss_pred HHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc------------
Q 007443 287 LREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL------------ 354 (603)
Q Consensus 287 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~------------ 354 (603)
.. .+ +..++|++|||+.+ .|||||++++.++++++.+.
T Consensus 135 -----------~~---------~e---------~l~~~~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~ 184 (227)
T cd02011 135 -----------IS---------HE---------ELEALFRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKRA 184 (227)
T ss_pred -----------cC---------ch---------hHHHHHHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 11467899999999 89999999988877654331
Q ss_pred ----CCCCc--EEEEEEeecCCCCC
Q 007443 355 ----GSMGP--VLVHVVTEENRRAE 373 (603)
Q Consensus 355 ----~~~gP--~lI~v~T~kG~G~~ 373 (603)
...+| =+|.++|.||+.=+
T Consensus 185 ~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 185 REGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 01234 26778999998533
No 53
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.78 E-value=4.9e-18 Score=173.09 Aligned_cols=226 Identities=18% Similarity=0.199 Sum_probs=154.5
Q ss_pred hhhhccCCHHHHHHHHHHH---HHHHHHHHh-----cCC--CcccCccchHHHHHHHHhhccCCCceeeec---------
Q 007443 88 PLRLKSLTIKELKQLAVEI---RSELSSIVS-----KTE--KSLKSSLAAVELTVALHHVFHAPVDKILWD--------- 148 (603)
Q Consensus 88 p~~~k~l~~~~L~~la~~i---R~~ii~~v~-----~~g--GHlgsslg~~el~~aL~~vf~~p~D~ii~d--------- 148 (603)
|.---.++.+|+..+.+.| |+.-+.+-+ +-- .|+ +-|+..+.+.+-..+ ++.|.+|.+
T Consensus 50 p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHL--y~GQEAvavGme~ai-t~~D~iItsYR~Hg~~~~ 126 (394)
T KOG0225|consen 50 PSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHL--YDGQEAVAVGMEAAI-TKSDSIITSYRCHGWTYL 126 (394)
T ss_pred CCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeee--cccHHHHHHHHHHhc-cCCCceEEEeeeeeEEee
Confidence 4444556777777766554 555443322 222 466 457777777776554 456777653
Q ss_pred CCchHH-HHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc
Q 007443 149 VGEQTY-AHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM 227 (603)
Q Consensus 149 ~GH~aY-~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~ 227 (603)
.|-..+ ...-|+||...-+ |..|| |+|.-..+ -.-+.|.+|.++|.+.|+|+|.++++++...+++-|||+.+
T Consensus 127 ~G~S~~~v~aEL~Gr~~Gc~--kGKGG-SMHmy~k~---FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaN 200 (394)
T KOG0225|consen 127 RGVSVREVLAELMGRQAGCS--KGKGG-SMHMYAKN---FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAAN 200 (394)
T ss_pred cCccHHHHHHHHhccccccc--cCCCc-ceeeeccc---ccCccceeccCCCccccHHHHHHhccCCceEEEEecccccc
Confidence 222122 2334666654433 33333 34332211 12378999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHH
Q 007443 228 AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (603)
Q Consensus 228 eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (603)
+|++|||+|+|..|++|+||||+||.|.+. | +. +|...
T Consensus 201 QGQ~fEa~NMA~LW~LP~IFvCENN~yGMG-T-------s~-------~Rasa--------------------------- 238 (394)
T KOG0225|consen 201 QGQVFEAFNMAALWKLPVIFVCENNHYGMG-T-------SA-------ERASA--------------------------- 238 (394)
T ss_pred chhHHHHhhHHHHhCCCEEEEEccCCCccC-c-------ch-------hhhhc---------------------------
Confidence 999999999999999999999999999862 1 11 01101
Q ss_pred hHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccC
Q 007443 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQK 377 (603)
Q Consensus 308 ~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~ 377 (603)
..+-|.||- + ++.+ .|||.|+-++.++.+.|++.. .+||.++++.|++-.|++.++.
T Consensus 239 ~teyykRG~-----------y-iPGl-~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDP 297 (394)
T KOG0225|consen 239 STEYYKRGD-----------Y-IPGL-KVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDP 297 (394)
T ss_pred ChHHHhccC-----------C-CCce-EECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCC
Confidence 112222321 1 4555 789999999999999998865 4899999999999999987753
No 54
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.74 E-value=3.3e-17 Score=167.07 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=109.5
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcC-----CCCeEEEEEcCCcc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCC
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKG-----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPK 259 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g-----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIlndN~~si~~t 259 (603)
...+|+|..++.|+|+|+|.++++ ++..+||++|||++ .+|.+||+||+|..++.| +|+||.||++++
T Consensus 110 ~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~--- 186 (265)
T cd02016 110 PNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGF--- 186 (265)
T ss_pred CCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE---
Confidence 356789999999999999999987 46789999999997 599999999999999977 999999999987
Q ss_pred ccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCC
Q 007443 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH 339 (603)
Q Consensus 260 ~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGh 339 (603)
+++.... ++ .....++.+++|++.+ .|||+
T Consensus 187 -----sT~~~~~-------~~-------------------------------------~~~~~~~a~~~gip~~-~VdG~ 216 (265)
T cd02016 187 -----TTDPRDS-------RS-------------------------------------SPYCTDVAKMIGAPIF-HVNGD 216 (265)
T ss_pred -----EecHHHh-------cc-------------------------------------cccHHHHHeecCCCEE-EEcCC
Confidence 3332100 00 0011355778999999 99999
Q ss_pred CHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCccc
Q 007443 340 NIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 340 D~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae 376 (603)
|++++++++++|.+.. .+||+||+++|+|-+|+...+
T Consensus 217 D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 217 DPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcC
Confidence 9999999988876542 478999999999999987543
No 55
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.65 E-value=5e-16 Score=157.03 Aligned_cols=126 Identities=22% Similarity=0.385 Sum_probs=105.0
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCC-CeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
.+.++.++++.|+|.|.|.|+..++ ..+||++|||+.+||.++-|+|+|+.+..|+||||-||+|.| |+|+
T Consensus 191 issplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AI--------STpt 262 (432)
T KOG1182|consen 191 ISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAI--------STPT 262 (432)
T ss_pred ecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeee--------cccc
Confidence 3567899999999999999987665 789999999999999999999999999999999999999999 4554
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
. +.|+ |.++ ..| -.++|+..+ +|||+|..+++.|.
T Consensus 263 s------------eQyr-------------~DGI---------a~k----------G~aYGi~sI-RVDGnD~lAvYnA~ 297 (432)
T KOG1182|consen 263 S------------EQYR-------------GDGI---------AVK----------GPAYGIRSI-RVDGNDALAVYNAV 297 (432)
T ss_pred H------------HHhc-------------CCce---------EEe----------ccccceEEE-EecCcchHHHHHHH
Confidence 1 1121 1111 012 247999999 89999999999999
Q ss_pred HHHHhcC--CCCcEEEEEEeec
Q 007443 349 QEVASLG--SMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~~--~~gP~lI~v~T~k 368 (603)
++|++.. .++|+||++.|++
T Consensus 298 k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 298 KEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred HHHHHHHHhccCchhhhhhhhh
Confidence 9998864 5799999999997
No 56
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.64 E-value=3.1e-15 Score=142.37 Aligned_cols=127 Identities=23% Similarity=0.266 Sum_probs=93.8
Q ss_pred CcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCccc
Q 007443 188 PFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 188 ~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~ 267 (603)
..+.|++|.++|.|+|++++. ++++|||++|||+++. .+|+|++|..++.|+++||.||+....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~---------- 105 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT---------- 105 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH----------
Confidence 456799999999999999984 5789999999999985 679999999999898888888875431
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
++.. .+.+ + . +. ......-.+++..+++++|++++ .|+ +++++.++
T Consensus 106 ~~~~----~~~~----~-----------~--~~----------~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a 151 (168)
T cd00568 106 IRMH----QEAF----Y-----------G--GR----------VSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAA 151 (168)
T ss_pred HHHH----HHHH----c-----------C--CC----------cccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0000 0000 0 0 00 00001112356789999999999 776 59999999
Q ss_pred HHHHHhcCCCCcEEEEEEe
Q 007443 348 LQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T 366 (603)
++++++. ++|++|+++|
T Consensus 152 ~~~a~~~--~~p~~i~v~~ 168 (168)
T cd00568 152 LAEALAA--GGPALIEVKT 168 (168)
T ss_pred HHHHHhC--CCCEEEEEEC
Confidence 9999875 8999999986
No 57
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.2e-13 Score=152.81 Aligned_cols=420 Identities=14% Similarity=0.126 Sum_probs=252.1
Q ss_pred CCcccCccchHHHHHHHHhhccC-CCceee-ecCCchHH---HHHHHhcc-----------hhHhh----HhhhcCCCCC
Q 007443 118 EKSLKSSLAAVELTVALHHVFHA-PVDKIL-WDVGEQTY---AHKILTGR-----------RSLIH----TLRKKDGISG 177 (603)
Q Consensus 118 gGHlgsslg~~el~~aL~~vf~~-p~D~ii-~d~GH~aY---~~~~LtGr-----------~~~~~----~~R~~ggl~g 177 (603)
-||.|.+.|..-+..-+..+-.. ..+.+. .-.||..- +..+|.|. .+.|. .|+-.||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 38999998887766555443322 233332 34577652 22334432 23333 3444589999
Q ss_pred CCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccch---HHHHHHHhh-hcCCCEEEEEECCC
Q 007443 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAG-YLDSNMIVILNDSR 253 (603)
Q Consensus 178 ~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~---~~EAln~A~-~~~~nlivIlndN~ 253 (603)
|..+ +.|+---..|-+|.+++.|.|.|+- .++-.++||+|||+-.+|. .|-+--+.. ....+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 9886 4666556789999999999888764 7899999999999544442 232211111 12377999999999
Q ss_pred CCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEE
Q 007443 254 HSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYI 333 (603)
Q Consensus 254 ~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~i 333 (603)
+.|.. +.+ |+++. . + ++..+|+.+||+-+
T Consensus 215 ykI~n-------pT~------lar~s----------------------------~-~---------el~~~f~G~Gy~p~ 243 (793)
T COG3957 215 YKIEN-------PTV------LARIS----------------------------D-E---------ELKALFEGYGYEPV 243 (793)
T ss_pred eeccC-------cee------eeecC----------------------------h-H---------HHHHHHhhCCCcee
Confidence 99841 111 11110 0 0 01467999999888
Q ss_pred eecCCCCHHHHHHH----H----HH-------HHhcC-CCCc--EEEEEEeecCCCCCcccC-Cc------h--------
Q 007443 334 GPVDGHNIEDLISV----L----QE-------VASLG-SMGP--VLVHVVTEENRRAEDTQK-SE------A-------- 380 (603)
Q Consensus 334 g~vDGhD~~~l~~a----l----~~-------a~~~~-~~gP--~lI~v~T~kG~G~~~ae~-~~------~-------- 380 (603)
-|+|+|+.+.-+. + ++ +++.. ..+| =+|.++|.||++-+..-. .. .
T Consensus 244 -~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~ 322 (793)
T COG3957 244 -FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGH 322 (793)
T ss_pred -EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCC
Confidence 7899999883332 2 11 22210 1122 236788988876433211 00 0
Q ss_pred -----hhhcc----cC-C-----------------------------CC------CCC--CCC-----------CCCCcc
Q 007443 381 -----IEKQQ----EG-A-----------------------------SD------SNS--LPF-----------GNYSRT 402 (603)
Q Consensus 381 -----~g~~~----~~-~-----------------------------~~------~~~--~p~-----------~~~~~s 402 (603)
|-+.+ ++ + |. +.+ +|. +..+..
T Consensus 323 ~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~ 402 (793)
T COG3957 323 NLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAE 402 (793)
T ss_pred CCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchh
Confidence 00000 00 0 00 001 111 112334
Q ss_pred HHHHHHHHHHHHHhcCCC-EEEEecCCCCCcchhhh----hHh----------C---CCCeeecchhhHHHHHHHHHHhc
Q 007443 403 YDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLF----QEK----------F---PERYFDVGMAEQHAVTFSAGLAC 464 (603)
Q Consensus 403 ~~~a~~~aL~~~~~~d~~-vvvi~aDl~~~~~l~~f----~~~----------f---p~R~id~GIaE~~~vg~AaGlA~ 464 (603)
-+.++++.|.+.++.|++ +.++++|-..+.++.+. .+. + .+|+++ .++|+...|.+.|.++
T Consensus 403 ~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~L 481 (793)
T COG3957 403 STTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLL 481 (793)
T ss_pred hHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHh
Confidence 468899999999999877 99999998777666332 111 1 368888 9999999999999999
Q ss_pred CCCeEEEEecHHhH---HHHHHH--HHHHhhc-----CCCCeEEEEeCCCC--CCCCCCCCCChhhHHH-HhcCC-CcEE
Q 007443 465 GGLKPFCIIPSAFL---QRAYDQ--VVNDVDQ-----QRLPVRFVITSAGL--VGSDGPTQCGAFDITF-MSCLP-NMIV 530 (603)
Q Consensus 465 ~G~~P~~~~~~~Fl---~ra~dQ--i~~~~a~-----~~lpV~~~~~~~G~--~g~dG~tH~~~~dia~-lr~iP-nl~V 530 (603)
.|..-+++.|-+|+ .-++.| ++..++. ...+-......++. -+.+|-|||...=+.. +...| ++.|
T Consensus 482 tGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRv 561 (793)
T COG3957 482 TGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRV 561 (793)
T ss_pred cCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeE
Confidence 99999999999997 334444 2223332 12222222223455 3789999997554433 33444 4678
Q ss_pred EecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccc-cC------CCCCCcccccccc-c-CCcEEEEEecHHH
Q 007443 531 MAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRT-DL------PGYRGIPIEVVTR-H-ASCTCLIITFEML 595 (603)
Q Consensus 531 ~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~-~~------~~~~~~~~~~Gka-~-G~dvtIIa~G~~v 595 (603)
+.|+|++-+..++.+|+...+.-.+|..+|++.+.. .. ...+.-.++.-.. . ..||.+.+.|.+.
T Consensus 562 yfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~ 635 (793)
T COG3957 562 YFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVP 635 (793)
T ss_pred ecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcc
Confidence 999999999999999987656667777777764321 00 0011112221111 1 3479999999864
No 58
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.57 E-value=6.6e-14 Score=134.74 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=90.1
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEE-EEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI-VILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli-vIlndN~~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++| .++++|||++|||+++ +..++|.+|+.++.|++ +|+|||++++..
T Consensus 46 ~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~---------- 109 (172)
T cd02004 46 TFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGL---------- 109 (172)
T ss_pred CCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccch----------
Confidence 468899999999999998 5688999999999998 56789999999997755 455666676521
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+++.. |. +... .....-.+++..++++||+++. .|+ +++++.+++
T Consensus 110 -----~~~~~~----~~-------------~~~~---------~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 155 (172)
T cd02004 110 -----DGQQLS----YG-------------LGLP---------VTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPAL 155 (172)
T ss_pred -----hhhhhh----cc-------------CCCc---------eeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 000000 00 0000 0000113467889999999999 777 699999999
Q ss_pred HHHHhcCCCCcEEEEEEe
Q 007443 349 QEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T 366 (603)
+++.+. ++|++|++++
T Consensus 156 ~~a~~~--~~p~liev~i 171 (172)
T cd02004 156 KRALAS--GKPALINVII 171 (172)
T ss_pred HHHHHc--CCCEEEEEEc
Confidence 999876 8999999986
No 59
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.56 E-value=1.4e-13 Score=135.50 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEE-ECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVIL-NDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIl-ndN~~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|+++| .++++|||++|||+++ +...+|.+|.+++.|+++|| ||+++.+.
T Consensus 51 ~~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~----------- 113 (196)
T cd02013 51 SFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAE----------- 113 (196)
T ss_pred CCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhHHH-----------
Confidence 468899999999999988 5788999999999997 66788999999998877766 55555420
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+..++. ..+.... . -.+-.+++..++++||+++. .|+ +.++|.+++
T Consensus 114 ----~~~q~~------------------~~~~~~~----~-----~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al 159 (196)
T cd02013 114 ----KKNQVD------------------FYNNRFV----G-----TELESESFAKIAEACGAKGI-TVD--KPEDVGPAL 159 (196)
T ss_pred ----HHHHHH------------------HcCCCcc----c-----ccCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHH
Confidence 000000 0000000 0 00113577899999999998 666 799999999
Q ss_pred HHHHh---cCCCCcEEEEEEeecCCC
Q 007443 349 QEVAS---LGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 349 ~~a~~---~~~~gP~lI~v~T~kG~G 371 (603)
+++.+ . ++|+||++.+.+..+
T Consensus 160 ~~a~~~~~~--~~p~liev~v~~~~~ 183 (196)
T cd02013 160 QKAIAMMAE--GKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHhcCCC--CCeEEEEEEeCcccC
Confidence 99876 4 899999999976554
No 60
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.51 E-value=4.7e-13 Score=131.06 Aligned_cols=121 Identities=18% Similarity=0.316 Sum_probs=93.2
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCC-CCcCCCccCCCcc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSR-HSLHPKIEESPKT 266 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~-~si~~t~~~g~s~ 266 (603)
++.|+||.++++|+|+++| .++++|||++|||+++ +..++|.+|+.++ .|+++||.||+ +.+. +...
T Consensus 45 ~~~g~mG~~lpaAiGaala----~p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~ 113 (188)
T cd03371 45 LTVGSMGHASQIALGIALA----RPDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQP 113 (188)
T ss_pred eecCccccHHHHHHHHHHh----CCCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcC
Confidence 4569999999999999998 4678999999999997 6678899999888 47777666666 4321 0000
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 267 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
.. + ..+++..++++||+.+...|+ +.++|.+
T Consensus 114 ~~------------------------------~-----------------~~~d~~~~A~a~G~~~~~~v~--~~~el~~ 144 (188)
T cd03371 114 TV------------------------------S-----------------FDVSLPAIAKACGYRAVYEVP--SLEELVA 144 (188)
T ss_pred CC------------------------------C-----------------CCCCHHHHHHHcCCceEEecC--CHHHHHH
Confidence 00 0 023557889999998743666 8999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCCC
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~G 371 (603)
+++++.+. ++|++|++.|.++++
T Consensus 145 al~~a~~~--~~p~lIev~~~~~~~ 167 (188)
T cd03371 145 ALAKALAA--DGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHhC--CCCEEEEEEecCCCC
Confidence 99999875 899999999988876
No 61
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.50 E-value=6e-13 Score=129.83 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=92.8
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|+++| .++++|||++|||+++ +..++|.+|..++.|+++||.||+ +.+
T Consensus 48 ~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~------------ 109 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGM------------ 109 (186)
T ss_pred CccchhchHHHHHHHHHh----CCCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHH------------
Confidence 458899999999999998 4678999999999997 677889999999988777666666 332
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhh-cc-CCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR-GM-IGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
.+..++.. .++. +.. .. -.+++..++++||++++ .|+ +.+++.+
T Consensus 110 ---~~~~~~~~------------------~~~~----------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 155 (186)
T cd02015 110 ---VRQWQELF------------------YEGR----------YSHTTLDSNPDFVKLAEAYGIKGL-RVE--KPEELEA 155 (186)
T ss_pred ---HHHHHHHH------------------cCCc----------eeeccCCCCCCHHHHHHHCCCceE-EeC--CHHHHHH
Confidence 00000000 0000 000 00 12467889999999999 777 5899999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCC
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++++.+. ++|++|++.|.+..
T Consensus 156 al~~a~~~--~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALAS--DGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHhC--CCCEEEEEEeCCCc
Confidence 99999876 89999999997543
No 62
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.50 E-value=1e-12 Score=130.32 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=92.6
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCE-EEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNM-IVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nl-ivIlndN~~si~~t~~~g~s~~ 267 (603)
...|+||.++++|+|.++| .++++|||++|||++. +...+|.+|.+++.|+ +||+|||++.+.
T Consensus 45 ~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~---------- 108 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFGCI---------- 108 (205)
T ss_pred CCcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCccHHH----------
Confidence 3568899999999999998 4788999999999998 4456899999999775 555555556431
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH--hhhc-cCCCChhhHHhhcCCeEEeecCCCCHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE--YARG-MIGPQGSTLFEELGLYYIGPVDGHNIEDL 344 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~~~~~~~~lfea~G~~~ig~vDGhD~~~l 344 (603)
+.+++....+. ++.... .+... .... .-.+++..++++||+++. .| +++++|
T Consensus 109 -----~~~q~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el 163 (205)
T cd02003 109 -----NNLQESTGSGS--------------FGTEFR---DRDQESGQLDGALLPVDFAANARSLGARVE-KV--KTIEEL 163 (205)
T ss_pred -----HHHHHHhcCcc--------------ccchhc---ccccccccccCCCCCCCHHHHHHhCCCEEE-EE--CCHHHH
Confidence 11111000000 000000 00000 0000 113577899999999998 66 589999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeecCC
Q 007443 345 ISVLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 345 ~~al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
.++++++.+. ++|++|++.|.+..
T Consensus 164 ~~al~~a~~~--~gp~lIeV~v~~~~ 187 (205)
T cd02003 164 KAALAKAKAS--DRTTVIVIKTDPKS 187 (205)
T ss_pred HHHHHHHHhC--CCCEEEEEEeeccc
Confidence 9999999876 89999999997644
No 63
>PRK06163 hypothetical protein; Provisional
Probab=99.49 E-value=1.3e-12 Score=129.32 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=91.5
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhc-CCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL-DSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~-~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
..|.+|.++++|+|+++| .++++|||++|||+++ |...+|..|+.+ +.|+++||.||+ +.+. +..+
T Consensus 55 ~~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~-----~~~~- 122 (202)
T PRK06163 55 MLGSMGLAFPIALGVALA----QPKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT-----GGQP- 122 (202)
T ss_pred eecccccHHHHHHHHHHh----CCCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc-----CCcc-
Confidence 468999999999999999 4788999999999996 777889999866 567777777765 4420 0000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe-EEeecCCCCHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLIS 346 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~-~ig~vDGhD~~~l~~ 346 (603)
. . ..-.+|+..++++||++ .+ .|+ +.++|.+
T Consensus 123 ~------------------------------~---------------~~~~~Df~~lA~a~G~~~~~-~v~--~~~el~~ 154 (202)
T PRK06163 123 T------------------------------L---------------TSQTVDVVAIARGAGLENSH-WAA--DEAHFEA 154 (202)
T ss_pred C------------------------------C---------------CCCCCCHHHHHHHCCCceEE-EeC--CHHHHHH
Confidence 0 0 00124567889999997 45 454 8999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCCCCC
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENRRAE 373 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~G~~ 373 (603)
+++++.+. ++|+||++.+......+
T Consensus 155 al~~a~~~--~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 155 LVDQALSG--PGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHHhC--CCCEEEEEEecCCCCCC
Confidence 99999876 89999999997655433
No 64
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.48 E-value=1e-12 Score=127.01 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=90.5
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
.+ |.+|.++++|+|.++|. ++++|||++|||+++.+ .++|.+|..++.|+++||.||+ +.+.
T Consensus 47 ~~-g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~---------- 109 (178)
T cd02002 47 RG-GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGAL---------- 109 (178)
T ss_pred CC-ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHH----------
Confidence 35 99999999999999984 57899999999999855 4789999999988888877776 5431
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+.+++........ . .+..+ .. ...-.+++..+++++|+++. .|++ .+++.++
T Consensus 110 -----~~~~~~~~~~~~~----~----~~~~~---------~~---~~~~~~d~~~~a~a~G~~~~-~v~~--~~el~~a 161 (178)
T cd02002 110 -----RSFLKRVGPEGPG----E----NAPDG---------LD---LLDPGIDFAAIAKAFGVEAE-RVET--PEELDEA 161 (178)
T ss_pred -----HHHHHHHcCCCcc----c----ccccc---------cc---cCCCCCCHHHHHHHcCCceE-EeCC--HHHHHHH
Confidence 0000000000000 0 00000 00 00012466889999999998 7775 9999999
Q ss_pred HHHHHhcCCCCcEEEEEEe
Q 007443 348 LQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T 366 (603)
++++.+. ++|++||+++
T Consensus 162 l~~a~~~--~~p~vi~v~v 178 (178)
T cd02002 162 LREALAE--GGPALIEVVV 178 (178)
T ss_pred HHHHHhC--CCCEEEEEEC
Confidence 9999875 8999999874
No 65
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.47 E-value=1e-12 Score=127.68 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=89.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEE-EECCCCCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVI-LNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivI-lndN~~si~~t~~~g~s~~ 267 (603)
..|++|.++++|+|+|+|. + ++|||++|||++. +..+++..|..++ .|+++| +|||++++. +.+..
T Consensus 40 ~~g~mG~~lp~AiGaala~----~-~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-----~~~~~ 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQ----P-RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-----GNQPT 107 (179)
T ss_pred cccchhhHHHHHHHHHhcC----C-CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-----CCCCC
Confidence 4799999999999999994 3 7899999999996 4456888888887 566555 566666641 10000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
. . ...+++..++++||+++. .++| +++++.++
T Consensus 108 ~----------------------------------------~------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~a 139 (179)
T cd03372 108 H----------------------------------------A------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEKA 139 (179)
T ss_pred C----------------------------------------C------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHHH
Confidence 0 0 002355778999999999 7777 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecCCC
Q 007443 348 LQEVASLGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG~G 371 (603)
+++++ ++|++|++.|.++.+
T Consensus 140 l~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 140 VEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHhc----CCCEEEEEEEcCCCC
Confidence 99886 589999999988776
No 66
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.46 E-value=2.2e-12 Score=125.11 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=90.1
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|+++| .++++|||++|||+++-+ ..+|.+|..++.|+++||.||+ +.+.
T Consensus 49 ~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~----------- 111 (178)
T cd02014 49 LLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFI----------- 111 (178)
T ss_pred CCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHH-----------
Confidence 468899999999999988 467899999999999844 4668889999988777776665 5431
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+...+.. +.+. +....-.+++..++++||+++. .++ +.+++.+++
T Consensus 112 ----~~~~~~~-------------------~~~~---------~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~~l 156 (178)
T cd02014 112 ----KWEQEVM-------------------GQPE---------FGVDLPNPDFAKIAEAMGIKGI-RVE--DPDELEAAL 156 (178)
T ss_pred ----HHHHHHh-------------------cCCc---------eeccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 0000000 0000 0000112356789999999998 666 799999999
Q ss_pred HHHHhcCCCCcEEEEEEeec
Q 007443 349 QEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~k 368 (603)
+++++. ++|++|+++|.+
T Consensus 157 ~~a~~~--~~p~liev~~~~ 174 (178)
T cd02014 157 DEALAA--DGPVVIDVVTDP 174 (178)
T ss_pred HHHHhC--CCCEEEEEEeCC
Confidence 999886 899999999854
No 67
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.46 E-value=3.7e-12 Score=125.97 Aligned_cols=140 Identities=20% Similarity=0.176 Sum_probs=93.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|++|.++++|+|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||-||+ |.+
T Consensus 55 ~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~yg~------------ 116 (202)
T cd02006 55 QAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGL------------ 116 (202)
T ss_pred CccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchHHH------------
Confidence 468999999999999998 4788999999999997 777899999999988777777776 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+..++.. | .+...... ...........-.+++.++.++||+++. .|+ +.++|.++|
T Consensus 117 ---~~~~q~~~----~-----------~~~~~~~~--~~~~~~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al 173 (202)
T cd02006 117 ---IRQAQRAF----D-----------MDYQVNLA--FENINSSELGGYGVDHVKVAEGLGCKAI-RVT--KPEELAAAF 173 (202)
T ss_pred ---HHHHHHHh----c-----------Cccccccc--cccccccccCCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHH
Confidence 00000000 0 00000000 0000000000013578899999999988 665 899999999
Q ss_pred HHHHhc--CCCCcEEEEEEeecCC
Q 007443 349 QEVASL--GSMGPVLVHVVTEENR 370 (603)
Q Consensus 349 ~~a~~~--~~~gP~lI~v~T~kG~ 370 (603)
+++.+. ..++|+||++.+.+..
T Consensus 174 ~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 174 EQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHhcccCCCcEEEEEEecccc
Confidence 998751 1279999999986544
No 68
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.44 E-value=2.4e-12 Score=124.86 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=91.7
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEE-ECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVIL-NDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIl-ndN~~si~~t~~~g~s~~ 267 (603)
.+.|.+|.++++|+|.++| .++++|||++|||+++ +....|.+|.+++.|+++|| ||+++.+.
T Consensus 45 ~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~---------- 108 (177)
T cd02010 45 NGLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLI---------- 108 (177)
T ss_pred CCChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHH----------
Confidence 3568899999999999998 4688999999999997 77788999999997766665 55555430
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+..++. .+ ++.. ...+-.+++.++.++||+++. .|+ +.+++.++
T Consensus 109 -----~~~~~~----~~--------------~~~~----------~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 152 (177)
T cd02010 109 -----KWKQEK----EY--------------GRDS----------GVDFGNPDFVKYAESFGAKGY-RIE--SADDLLPV 152 (177)
T ss_pred -----HHHHHH----hc--------------CCcc----------cCcCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHH
Confidence 000000 00 0000 000112467889999999998 665 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
++++.+. ++|++|++.+..
T Consensus 153 l~~a~~~--~~p~liev~~~~ 171 (177)
T cd02010 153 LERALAA--DGVHVIDCPVDY 171 (177)
T ss_pred HHHHHhC--CCCEEEEEEecc
Confidence 9999886 899999999854
No 69
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.44 E-value=1.9e-12 Score=123.29 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=88.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECC-CCCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDS-RHSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN-~~si~~t~~~g~s~~ 267 (603)
..|++|.++++|+|+++|+ +++|||++|||+++ |...+|..++.++ .|+++||-|| .+.+. +.+..
T Consensus 40 ~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~-----~~~~~ 107 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST-----GGQPT 107 (157)
T ss_pred eecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc-----CCcCC
Confidence 4899999999999999984 27899999999996 4556788888874 8887777555 45431 00000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
....+++..+++++|+++. .+ ++++++.++
T Consensus 108 -----------------------------------------------~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~a 137 (157)
T cd02001 108 -----------------------------------------------PSSNVNLEAWAAACGYLVL-SA--PLLGGLGSE 137 (157)
T ss_pred -----------------------------------------------CCCCCCHHHHHHHCCCceE-Ec--CCHHHHHHH
Confidence 0002456788999999998 55 589999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecC
Q 007443 348 LQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG 369 (603)
++++.+. ++|++|++++.++
T Consensus 138 l~~a~~~--~gp~vi~v~i~~~ 157 (157)
T cd02001 138 FAGLLAT--TGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHhC--CCCEEEEEEecCC
Confidence 9999876 8999999998654
No 70
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.44 E-value=5.5e-13 Score=129.33 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=91.5
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchH-HHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
+.|.+|.++++|+|+++|+ ++++|||++|||++. +. +++|.+|.+++.|+++||.||+ +.+ .+.+..
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~-----~~~~~~ 117 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAM-----TGGQPH 117 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceec-----cCCCCC
Confidence 4789999999999999994 578999999999996 33 6899999999977666655555 443 111110
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
.. . ... .....-.+++..++++||++++...+++|++++.++
T Consensus 118 ~~-----------~-----------------~~~----------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 118 PG-----------T-----------------GKT----------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred CC-----------C-----------------ccc----------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 00 0 000 000001245688999999999965699999999999
Q ss_pred HHHHHhcCCCCcEEEEEEe
Q 007443 348 LQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T 366 (603)
++++.+. ++|++|+++.
T Consensus 160 l~~a~~~--~gp~lI~v~~ 176 (178)
T cd02008 160 LKEALAV--PGVSVIIAKR 176 (178)
T ss_pred HHHHHhC--CCCEEEEEeC
Confidence 9999876 8999999985
No 71
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.42 E-value=2e-12 Score=126.07 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=88.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
..|.+|.++++|+|+++| .++++|||++|||+++ +...+|.+|..++ ..+++|+|||++.+.. .
T Consensus 48 ~~g~mG~~l~~aiGaala----~~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~--------~- 112 (183)
T cd02005 48 LWGSIGYSVPAALGAALA----APDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIER--------A- 112 (183)
T ss_pred chhhHhhhHHHHHHHHHh----CCCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEE--------E-
Confidence 468899999999999998 4678999999999996 4445577888888 5567777777776410 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcC----CeEEeecCCCCHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG----LYYIGPVDGHNIEDL 344 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G----~~~ig~vDGhD~~~l 344 (603)
.+.. ... + ..+..+++..+++++| ++++ .| ++.+++
T Consensus 113 ---------~~~~-----------------~~~----------~-~~~~~~d~~~ia~a~G~~~~~~~~-~v--~~~~el 152 (183)
T cd02005 113 ---------IHGP-----------------EAS----------Y-NDIANWNYTKLPEVFGGGGGGLSF-RV--KTEGEL 152 (183)
T ss_pred ---------eccC-----------------CcC----------c-ccCCCCCHHHHHHHhCCCccccEE-Ee--cCHHHH
Confidence 0000 000 0 0111346678899999 6777 44 689999
Q ss_pred HHHHHHHHh-cCCCCcEEEEEEeec
Q 007443 345 ISVLQEVAS-LGSMGPVLVHVVTEE 368 (603)
Q Consensus 345 ~~al~~a~~-~~~~gP~lI~v~T~k 368 (603)
.++|+++.+ . ++|+|||+.|.+
T Consensus 153 ~~al~~a~~~~--~~p~liev~~~~ 175 (183)
T cd02005 153 DEALKDALFNR--DKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHHhcC--CCcEEEEEEcCc
Confidence 999999987 5 899999999854
No 72
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.40 E-value=8.1e-11 Score=134.75 Aligned_cols=315 Identities=17% Similarity=0.164 Sum_probs=212.0
Q ss_pred chhhhHHHHHHHHHHHH-HcC--C---CCeEEEEEcCCccc-cchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccC
Q 007443 193 HGCNSVSAGLGMAVARD-IKG--K---RECIVTVISNGTTM-AGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEE 262 (603)
Q Consensus 193 ~~G~~is~A~G~A~A~~-l~g--~---~~~Vv~viGDGal~-eG~~~EAln~A~~~~~n---livIlndN~~si~~t~~~ 262 (603)
|+=.-=++.-|+..|+. +.+ . ....+++-||++|. +|+++|.||.+..++.+ .|+||.||++..-
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGft----- 694 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFT----- 694 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccc-----
Confidence 44444467779988842 222 2 23457788999976 99999999999988866 9999999998761
Q ss_pred CCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHH
Q 007443 263 SPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIE 342 (603)
Q Consensus 263 g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~ 342 (603)
++... -+++ . |. .++.+.++.+.+ .|||.|++
T Consensus 695 ---T~p~~-------~Rss-~----------------------------y~--------td~ak~~~~Pif-hVNGdDpe 726 (1228)
T PRK12270 695 ---TAPES-------SRSS-E----------------------------YA--------TDVAKMIQAPIF-HVNGDDPE 726 (1228)
T ss_pred ---cCccc-------cccc-h----------------------------hh--------HHHHhhcCCCEE-eECCCCHH
Confidence 11100 0000 0 00 234566888999 78999999
Q ss_pred HHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCccc----CCc---------------------hhh----h--------
Q 007443 343 DLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQ----KSE---------------------AIE----K-------- 383 (603)
Q Consensus 343 ~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae----~~~---------------------~~g----~-------- 383 (603)
+++.+.+.|.++. .++|++|++.|+|-+|+.-.+ .+| ..| +
T Consensus 727 Av~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~d 806 (1228)
T PRK12270 727 AVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRD 806 (1228)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 9999988877653 479999999999999983222 122 000 0
Q ss_pred ---ccc----------CCCC----------------CC---------------CCCCC-------------------CCC
Q 007443 384 ---QQE----------GASD----------------SN---------------SLPFG-------------------NYS 400 (603)
Q Consensus 384 ---~~~----------~~~~----------------~~---------------~~p~~-------------------~~~ 400 (603)
++. ..+. .+ .+|.+ ...
T Consensus 807 y~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~ 886 (1228)
T PRK12270 807 YQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGG 886 (1228)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCC
Confidence 000 0000 00 11110 112
Q ss_pred ccHHHHHHHHH--HHHHhcCCCEEEEecCCCCCcchh---------------hhhHhC--CC--CeeecchhhHHHHHHH
Q 007443 401 RTYDDCFIEAL--VMEAEKDKDIVVVHAGMEMDLSLQ---------------LFQEKF--PE--RYFDVGMAEQHAVTFS 459 (603)
Q Consensus 401 ~s~~~a~~~aL--~~~~~~d~~vvvi~aDl~~~~~l~---------------~f~~~f--p~--R~id~GIaE~~~vg~A 459 (603)
+.| +|++.| -.++.+...|-.-|+|...++-.. .|+.-- .. -++|+.++|.+.+|+=
T Consensus 887 iDW--a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFE 964 (1228)
T PRK12270 887 IDW--AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFE 964 (1228)
T ss_pred ccH--HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccc
Confidence 223 345543 356677778888999987654221 111111 12 3569999999999999
Q ss_pred HHHhcCC--CeEEEEe-cHHhH---HHHHHHHHHHh-hc--CCCCeEEEEeCCCCCCCCCCCCCC--hhhHHHHhcCCCc
Q 007443 460 AGLACGG--LKPFCII-PSAFL---QRAYDQVVNDV-DQ--QRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNM 528 (603)
Q Consensus 460 aGlA~~G--~~P~~~~-~~~Fl---~ra~dQi~~~~-a~--~~lpV~~~~~~~G~~g~dG~tH~~--~~dia~lr~iPnl 528 (603)
-|.+.+. -.++++. |.+|. |-.+|+..... ++ |+..|+++.+| |+-| .||-|++ +|=.--|.+=.||
T Consensus 965 YGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH-GyEG-QGPdHSSaRiERfLqlcAe~nm 1042 (1228)
T PRK12270 965 YGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GYEG-QGPDHSSARIERFLQLCAEGNM 1042 (1228)
T ss_pred eeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC-CcCC-CCCCcchHHHHHHHHhhccCCe
Confidence 9999886 4556666 99997 88899976642 23 77899999998 7755 6999986 4444445566899
Q ss_pred EEEecCCHHHHHHHHHH-HHhCCCCcEEEEeecCCCc
Q 007443 529 IVMAPSDEDELVDMVAT-VASIDDRPVCFRYPRGAIV 564 (603)
Q Consensus 529 ~V~~Psd~~e~~~~l~~-a~~~~~~P~~ir~~r~~~~ 564 (603)
+|..|++|.....+|++ ++....+|.+++.||.+..
T Consensus 1043 ~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR 1079 (1228)
T PRK12270 1043 TVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLR 1079 (1228)
T ss_pred EEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhc
Confidence 99999999999999985 5556678999999998764
No 73
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.40 E-value=1.5e-12 Score=122.94 Aligned_cols=128 Identities=17% Similarity=0.246 Sum_probs=92.3
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
...|.+|.++++|+|+++| .++++|||++|||++. +...+|.+|.+++.|+++||-||+ +.+
T Consensus 25 ~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~----------- 87 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGM----------- 87 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHH-----------
T ss_pred CCccccCCHHHhhhHHHhh----cCcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceE-----------
Confidence 4678999999999999998 5789999999999997 556789999999988777777776 322
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
++. .+. . .+... ......+..-.+++..+++++|+++. .|+-.|++++.++
T Consensus 88 ~~~----~~~----~---------------~~~~~-----~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~a 138 (153)
T PF02775_consen 88 TGG----QQT----P---------------FGGGR-----FSGVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEA 138 (153)
T ss_dssp HHH----HHH----H---------------TTSTC-----HHSTBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHH
T ss_pred ecc----ccc----c---------------CcCcc-----cccccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHHH
Confidence 100 000 0 00000 00000001123467899999999988 8888888999999
Q ss_pred HHHHHhcCCCCcEEEEE
Q 007443 348 LQEVASLGSMGPVLVHV 364 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v 364 (603)
++++.+. +||+||||
T Consensus 139 l~~a~~~--~gp~vIeV 153 (153)
T PF02775_consen 139 LREALES--GGPAVIEV 153 (153)
T ss_dssp HHHHHHS--SSEEEEEE
T ss_pred HHHHHhC--CCcEEEEc
Confidence 9999986 89999996
No 74
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.39 E-value=4.2e-12 Score=119.01 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=102.3
Q ss_pred hHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCCh
Q 007443 438 QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA 516 (603)
Q Consensus 438 ~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~ 516 (603)
.++.|++.+..++.|++++++|.|.|+.|.+|++.+ +.+|+.++++||.. ++..++||+++....|..+.++.+||..
T Consensus 30 ~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~-a~~~~~Pvl~i~~~~~~~~~~~~~~q~~ 108 (154)
T cd06586 30 LREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD-AAAEHLPVVFLIGARGISAQAKQTFQSM 108 (154)
T ss_pred HhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH-HHhcCCCEEEEeCCCChhhhccCccccc
Confidence 345689999999999999999999999877888887 69999999999994 6789999999998777755567789999
Q ss_pred hhHHHHhcCCCcEEEecCCHHHHHHHHHHHH--hCCCCcEEEEeec
Q 007443 517 FDITFMSCLPNMIVMAPSDEDELVDMVATVA--SIDDRPVCFRYPR 560 (603)
Q Consensus 517 ~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~--~~~~~P~~ir~~r 560 (603)
+++.+++.+|++.+..|++.++...+.+... ....+|++|++|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 9999999999999999988776655554332 2347899999874
No 75
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.39 E-value=8.1e-12 Score=121.64 Aligned_cols=118 Identities=17% Similarity=0.256 Sum_probs=88.8
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCC-CCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
..|++|.++|+|+|+++| . +++|||++|||+++ +..++|..|+.++ .|+++||.||+ |++. +.+.
T Consensus 40 ~~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~-----~~q~- 106 (181)
T TIGR03846 40 MLGSMGLASSIGLGLALA----T-DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGST-----GNQP- 106 (181)
T ss_pred eccccccHHHHHHHHHHc----C-CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccccc-----cCcC-
Confidence 378999999999999998 3 78899999999997 4557899999888 59888877776 4431 1000
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
. . . .-.+++..++++||+++... .++++++.++
T Consensus 107 ~------------------------------~-------------~--~~~~d~~~lA~a~G~~~~~~--v~~~~~l~~a 139 (181)
T TIGR03846 107 T------------------------------P-------------A--SRRTDLELVAKAAGIRNVEK--VADEEELRDA 139 (181)
T ss_pred C------------------------------C-------------C--CCCCCHHHHHHHCCCCeEEE--eCCHHHHHHH
Confidence 0 0 0 00235678899999998832 4589999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecCC
Q 007443 348 LQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
|+ +.+. ++|++|++.+.++.
T Consensus 140 l~-a~~~--~~p~li~v~~~~~~ 159 (181)
T TIGR03846 140 LK-ALAM--KGPTFIHVKVKPGN 159 (181)
T ss_pred HH-HHcC--CCCEEEEEEeCCCC
Confidence 97 7665 89999999997554
No 76
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.38 E-value=5.8e-12 Score=130.93 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=111.6
Q ss_pred CcCcCchhhhHHHHHHHHHHHHHcCCC-CeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCc
Q 007443 188 PFNAGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPK 265 (603)
Q Consensus 188 ~~~~G~~G~~is~A~G~A~A~~l~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s 265 (603)
.+.....|.+++.|.|++.|.+.++++ ..||+++|||++.++- +|+|++|..++.|+++||.||++.+. |+. ..++
T Consensus 65 ~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~~~~-TGgQ~S~~ 142 (300)
T PRK11864 65 PVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEAYMN-TGIQRSSS 142 (300)
T ss_pred cceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCeeeec-CCCCCCCC
Confidence 345778999999999999998877664 5577799999998766 49999999999999999999998753 322 3344
Q ss_pred ccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHH
Q 007443 266 TSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (603)
Q Consensus 266 ~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~ 345 (603)
+|.|+.++.. ..|+... + -+...++.++|..|+..++..|+.++.
T Consensus 143 Tp~ga~t~ts---------------------p~G~~~~----k----------kdi~~i~~a~g~~yVA~~~~~~~~~~~ 187 (300)
T PRK11864 143 TPYGAWTTTT---------------------PGGKREH----K----------KPVPDIMAAHKVPYVATASIAYPEDFI 187 (300)
T ss_pred CcCCCccccC---------------------CCCCcCC----C----------CCHHHHHHHcCCCEEEEEeCCCHHHHH
Confidence 4554432110 1122110 0 133677889999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEee--cCCCCCcc
Q 007443 346 SVLQEVASLGSMGPVLVHVVTE--ENRRAEDT 375 (603)
Q Consensus 346 ~al~~a~~~~~~gP~lI~v~T~--kG~G~~~a 375 (603)
+++++|.+. +||.+|++.+. .++++.+.
T Consensus 188 ~~i~~A~~~--~Gps~I~~~spC~~~~~~~~~ 217 (300)
T PRK11864 188 RKLKKAKEI--RGFKFIHLLAPCPPGWRFDPD 217 (300)
T ss_pred HHHHHHHhC--CCCEEEEEeCCCCCCCCcChH
Confidence 999999987 89999999986 45555443
No 77
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.37 E-value=1.4e-11 Score=131.97 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=113.0
Q ss_pred cchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (603)
++-.+++-++...+ .+.+.+|.++|-.+. + +..+|. .-+.+|+.. ++..|++|+++++|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~---------e-l~~~~~-~~~~~~~~~------f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSR---------E-LYELRD-RIGQGHARD------FLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcH---------H-HHHhhc-ccccCCCCc------eEeechhhhHHHHHHHH
Confidence 45555544443333 234666778885431 1 123331 112344432 34579999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCC-CcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 205 A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~-si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
|+| .++++|||+.|||++. |..++|..++.++ .|+++||.||+. .. .|.+..+
T Consensus 234 ala----~p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-----~g~q~~~-------------- 288 (361)
T TIGR03297 234 ALA----RPDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-----VGGQPTV-------------- 288 (361)
T ss_pred HHH----CCCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-----cCCcCCC--------------
Confidence 998 4678999999999996 6677899999888 589888888884 21 1111100
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe-EEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~-~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
+ ...++..++++||+. .+ ..++.++|.++++++++. +||++
T Consensus 289 ----------------~-----------------~~~d~~~iA~a~G~~~~~---~v~~~~eL~~al~~a~~~--~gp~l 330 (361)
T TIGR03297 289 ----------------S-----------------QHLDFAQIAKACGYAKVY---EVSTLEELETALTAASSA--NGPRL 330 (361)
T ss_pred ----------------C-----------------CCCCHHHHHHHCCCceEE---EeCCHHHHHHHHHHHHhC--CCcEE
Confidence 0 023456789999984 44 457999999999999876 89999
Q ss_pred EEEEeecCCC
Q 007443 362 VHVVTEENRR 371 (603)
Q Consensus 362 I~v~T~kG~G 371 (603)
|++++.+|.+
T Consensus 331 IeV~v~~g~~ 340 (361)
T TIGR03297 331 IEVKVRPGSR 340 (361)
T ss_pred EEEEecCCCc
Confidence 9999988764
No 78
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.35 E-value=1.2e-11 Score=119.60 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=88.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++|. +++|||++|||++. +...+|.+|.+++.|+++||-||+ +.+...
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~--------- 112 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSL--------- 112 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchhee---------
Confidence 4577999999999999983 68899999999997 767899999998988666555555 543100
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+..+....|. ........+++..++++||+++. .|+ +.+++.++|
T Consensus 113 ------~~~~~~~~~~~-------------------------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al 158 (175)
T cd02009 113 ------LPQASFEDEFE-------------------------RLFGTPQGLDFEHLAKAYGLEYR-RVS--SLDELEQAL 158 (175)
T ss_pred ------ccCCcccchhh-------------------------hhhcCCCCCCHHHHHHHcCCCee-eCC--CHHHHHHHH
Confidence 00000000000 00000013567899999999998 665 899999999
Q ss_pred HHHHhcCCCCcEEEEEEe
Q 007443 349 QEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T 366 (603)
+++.+. ++|++|++.+
T Consensus 159 ~~a~~~--~~p~lIev~v 174 (175)
T cd02009 159 ESALAQ--DGPHVIEVKT 174 (175)
T ss_pred HHHHhC--CCCEEEEEeC
Confidence 999876 8999999986
No 79
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.34 E-value=3e-11 Score=136.15 Aligned_cols=167 Identities=21% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHHhhccCCCceeee-cCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHH
Q 007443 129 ELTVALHHVFHAPVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAV 206 (603)
Q Consensus 129 el~~aL~~vf~~p~D~ii~-d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~ 206 (603)
++.-.|..++ |+|.+|. |+| |+.|...++.-+ .|. +.+...+.|.||.++++|+|.++
T Consensus 363 ~v~~~l~~~~--~~daiv~~d~G~~~~w~a~~~~~~---------------~p~---~~~~s~~~GtMG~glPaAIGAkl 422 (550)
T COG0028 363 YVIKVLRELL--PDDAIVVTDVGQHQMWAARYFDFY---------------RPR---RFLTSGGLGTMGFGLPAAIGAKL 422 (550)
T ss_pred HHHHHHHHhC--CCCeEEEeCCcHHHHHHHHhcccC---------------CCC---cEEcCCCCccccchHHHHHHHHh
Confidence 3444444443 5577664 888 776666443311 011 22333467899999999999999
Q ss_pred HHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhhhhHH
Q 007443 207 ARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSSKSFR 285 (603)
Q Consensus 207 A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~ 285 (603)
| .+++.|||+.|||+++ |..+.|.+|.+++.|+++|+.||+ +.. .
T Consensus 423 a----~P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~---------------v------------- 468 (550)
T COG0028 423 A----APDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGM---------------V------------- 468 (550)
T ss_pred h----CCCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcccc---------------c-------------
Confidence 8 4789999999999997 888999999999999888777777 332 0
Q ss_pred HHHHHHhhhhhccccchhHHHHhHHHhhhccCCCC-hhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 007443 286 QLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ-GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (603)
Q Consensus 286 ~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v 364 (603)
|.+++.+. ++.. +. -.+.+. +.++.|+||++.. +|+ +.++|.++|+++.+. ++|++|++
T Consensus 469 --~~~q~~~~---~~~~---------~~-~~~~~~~f~klAea~G~~g~-~v~--~~~el~~al~~al~~--~~p~lidv 528 (550)
T COG0028 469 --RQWQELFY---GGRY---------SG-TDLGNPDFVKLAEAYGAKGI-RVE--TPEELEEALEEALAS--DGPVLIDV 528 (550)
T ss_pred --hHHHHHhc---CCCc---------ce-eecCCccHHHHHHHcCCeeE-EeC--CHHHHHHHHHHHHhC--CCCEEEEE
Confidence 11111110 0000 00 011223 6889999999999 777 999999999999987 89999999
Q ss_pred EeecC
Q 007443 365 VTEEN 369 (603)
Q Consensus 365 ~T~kG 369 (603)
.+.+.
T Consensus 529 ~id~~ 533 (550)
T COG0028 529 VVDPE 533 (550)
T ss_pred EecCc
Confidence 99765
No 80
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.26 E-value=1.5e-10 Score=131.89 Aligned_cols=126 Identities=13% Similarity=0.242 Sum_probs=92.8
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~-si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|+++| .++++|||++|||+++ +..++|++|.+++.|+++||.||+. ... . .
T Consensus 435 g~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~--------~-~ 499 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQ--------K-H 499 (578)
T ss_pred CccccccHHHHHHHHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCE--------E-e
Confidence 458899999999999988 5688999999999996 8889999999999888888877763 210 0 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.++. .++... . ...+-..++.+++++||+++. .|+ +.++|.+++
T Consensus 500 ------~~~~------------------~~~~~~--------~-~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al 543 (578)
T PRK06112 500 ------AETV------------------KFGTHT--------D-ACHFAAVDHAAIARACGCDGV-RVE--DPAELAQAL 543 (578)
T ss_pred ------cccc------------------ccCCcc--------c-cCcCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 0000 000000 0 000112456889999999998 665 799999999
Q ss_pred HHHHhcCCCCcEEEEEEeec
Q 007443 349 QEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~k 368 (603)
+++.+. +||+|||+++.+
T Consensus 544 ~~a~~~--~gp~lIev~~~~ 561 (578)
T PRK06112 544 AAAMAA--PGPTLIEVITDP 561 (578)
T ss_pred HHHHhC--CCCEEEEEEcCc
Confidence 999876 899999999964
No 81
>PRK08322 acetolactate synthase; Reviewed
Probab=99.25 E-value=3.8e-10 Score=127.64 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=91.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+ +.+.
T Consensus 404 ~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~----------- 466 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLV----HPDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMI----------- 466 (547)
T ss_pred CcccccchhHHHHHHHHh----CCCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchH-----------
Confidence 568899999999999998 4788999999999998 667889999999977666555554 5420
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+ ..|... .++. +.-.+-.+|+..+.++||+++. .|+ +.++|.+++
T Consensus 467 ----~---~~~~~~---------------~~~~----------~~~~~~~~df~~lA~a~G~~~~-~v~--~~~eL~~al 511 (547)
T PRK08322 467 ----R---WKQENM---------------GFED----------FGLDFGNPDFVKYAESYGAKGY-RVE--SADDLLPTL 511 (547)
T ss_pred ----H---HHHHhh---------------cCCc----------ccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 0 000000 0000 0000113578899999999998 664 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecC
Q 007443 349 QEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG 369 (603)
+++.+. ++|+||++.|.+.
T Consensus 512 ~~a~~~--~~p~lIev~v~~~ 530 (547)
T PRK08322 512 EEALAQ--PGVHVIDCPVDYS 530 (547)
T ss_pred HHHHhC--CCCEEEEEEecCc
Confidence 999876 8999999999643
No 82
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.25 E-value=1.8e-10 Score=130.08 Aligned_cols=172 Identities=14% Similarity=0.158 Sum_probs=112.4
Q ss_pred cchHHHHHHHHhhccCCCceeeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....+...|...++ +++.++.|.| |+.|...++.- + .|.. .....+.|++|.++++|+|
T Consensus 359 i~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~--------~-------~~~~---~~~~~~~g~mG~~lpaaiG 419 (539)
T TIGR02418 359 LHPLEIIKAMQAIVT-DDVTVTVDMGSHYIWMARYFRS--------Y-------RARH---LLISNGMQTLGVALPWAIG 419 (539)
T ss_pred cCHHHHHHHHHhhCC-CCCEEEECCcHHHHHHHHhccc--------C-------CCCc---eecCCCccccccHHHHHHH
Confidence 444555555655542 3455667887 45565543320 0 0110 1112356899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
.++| .++++|||++|||+++ |...+|.+|..++.|+++||-|| +|.+. +.. + ..
T Consensus 420 a~la----~~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~---------------~~~---~-~~ 474 (539)
T TIGR02418 420 AALV----RPNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNMV---------------EFQ---E-EM 474 (539)
T ss_pred HHHh----CCCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchHH---------------HHH---H-HH
Confidence 9998 4688999999999997 77788999999997766655555 45420 000 0 00
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI 362 (603)
.| ++. ..-.+-.+|+..++++||+++. .|+ +.++|.++|+++.+. ++|++|
T Consensus 475 ~~--------------~~~----------~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~a~~~--~~p~lI 525 (539)
T TIGR02418 475 KY--------------QRS----------SGVDFGPIDFVKYAESFGAKGL-RVE--SPDQLEPTLRQAMEV--EGPVVV 525 (539)
T ss_pred hc--------------CCc----------ccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEEE
Confidence 00 000 0001113577899999999998 555 899999999999876 899999
Q ss_pred EEEeecC
Q 007443 363 HVVTEEN 369 (603)
Q Consensus 363 ~v~T~kG 369 (603)
++.+.+.
T Consensus 526 ev~v~~~ 532 (539)
T TIGR02418 526 DIPVDYS 532 (539)
T ss_pred EEEecCc
Confidence 9999643
No 83
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.24 E-value=1.6e-10 Score=131.52 Aligned_cols=131 Identities=17% Similarity=0.248 Sum_probs=95.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|++|.++++|+|+++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+ |.+
T Consensus 406 ~~gsmG~~~paAiGa~la----~p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~------------ 467 (578)
T PRK06546 406 RHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGM------------ 467 (578)
T ss_pred CcccccchhHHHHHHHHh----CCCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCcccc------------
Confidence 468999999999999999 4688999999999998 566789999999988777777776 332
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+ |.... . .+.. ......-.+++.+++++||+++. .|+ ++++|.+++
T Consensus 468 --i----------------~~~q~--~--~~~~---------~~~~~~~~~df~~lA~a~G~~~~-~v~--~~~el~~al 513 (578)
T PRK06546 468 --V----------------KLEML--V--DGLP---------DFGTDHPPVDYAAIAAALGIHAV-RVE--DPKDVRGAL 513 (578)
T ss_pred --H----------------HHHHH--h--cCCC---------cccccCCCCCHHHHHHHCCCeeE-EeC--CHHHHHHHH
Confidence 0 00000 0 0000 00001123577899999999988 676 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCC-CCCc
Q 007443 349 QEVASLGSMGPVLVHVVTEENR-RAED 374 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~-G~~~ 374 (603)
+++.+. +||++|++.+.+.. .+++
T Consensus 514 ~~a~~~--~gp~lIev~~~~~~~~~~~ 538 (578)
T PRK06546 514 REAFAH--PGPALVDVVTDPNALSIPP 538 (578)
T ss_pred HHHHhC--CCCEEEEEEeCCCcccCCC
Confidence 999876 89999999996553 3444
No 84
>PRK06154 hypothetical protein; Provisional
Probab=99.24 E-value=3e-10 Score=129.09 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=113.5
Q ss_pred cchHHHHHHHHhhccCCCceeee-cCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~-d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....+...|...++ |+|.+|. |.| |+.|...++.-+ + |. +.......|++|.++++|+
T Consensus 381 l~p~~~~~~l~~~l~-~~d~iv~~D~G~~~~~~~~~~~~~--------~-------p~---~~~~~~~~gsmG~glpaai 441 (565)
T PRK06154 381 INPYRVVWELQHAVD-IKTVIITHDAGSPRDQLSPFYVAS--------R-------PG---SYLGWGKTTQLGYGLGLAM 441 (565)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEECCcccHHHHHHhCCCC--------C-------CC---eEEccCCCcccccHHHHHH
Confidence 444455544544432 3577665 888 555666444310 0 11 1111124688999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ |..++|.+|.+++.|+++||-||+ |.+.. +.+
T Consensus 442 Ga~la----~p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~------------------~~~-- 495 (565)
T PRK06154 442 GAKLA----RPDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYD------------------KVM-- 495 (565)
T ss_pred HHHHh----CCCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceee------------------hhh--
Confidence 99998 4788999999999997 777899999999988666665555 54310 000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc-CCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~-~~~gP~ 360 (603)
+. .+.. +.-....+|+.++.++||.++. .|+ +.++|.++|+++.+. ..++|+
T Consensus 496 ----~~----------~~~~----------~~~~~~~~df~~lA~a~G~~g~-~V~--~~~el~~al~~a~~~~~~~~p~ 548 (565)
T PRK06154 496 ----PV----------STTK----------YRATDISGDYAAIARALGGYGE-RVE--DPEMLVPALLRALRKVKEGTPA 548 (565)
T ss_pred ----hh----------hcCc----------ccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhhccCCCeE
Confidence 00 0000 0000013577899999999998 776 899999999998752 127899
Q ss_pred EEEEEeecCC
Q 007443 361 LVHVVTEENR 370 (603)
Q Consensus 361 lI~v~T~kG~ 370 (603)
||++.+.+..
T Consensus 549 lIev~v~~~~ 558 (565)
T PRK06154 549 LLEVITSEET 558 (565)
T ss_pred EEEEEeChHH
Confidence 9999996543
No 85
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.24 E-value=1.4e-10 Score=131.55 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|.+|.++++|+|++++ .++++|||++|||+++ +..++|.+|..++.|+++||.||+ |.+
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~------------ 474 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGT------------ 474 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 358999999999999988 5788999999999997 777899999999999888887777 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+. ..+ ... .++... . -.+-.+++.+++++||+++. .|+ +.+++.+++
T Consensus 475 --~~----~~~-~~~--------------~~~~~~----~-----~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 521 (557)
T PRK08199 475 --IR----MHQ-ERE--------------YPGRVS----G-----TDLTNPDFAALARAYGGHGE-TVE--RTEDFAPAF 521 (557)
T ss_pred --HH----HHH-HHh--------------cCCccc----c-----ccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 00 000 000 000000 0 00112467899999999988 676 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecC
Q 007443 349 QEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG 369 (603)
+++.+. +||++|++.|.+.
T Consensus 522 ~~a~~~--~gp~li~v~~~~~ 540 (557)
T PRK08199 522 ERALAS--GKPALIEIRIDPE 540 (557)
T ss_pred HHHHhC--CCCEEEEEEeCHH
Confidence 999875 8999999999653
No 86
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.23 E-value=1.3e-10 Score=132.56 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=111.3
Q ss_pred cchHHHHHHHHhhccCCCce-eeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~-ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|...+ |+|. ++.|.| |+.|...++.-+ + |. ......+.|+||.++++|+
T Consensus 369 l~p~~~~~~l~~~l--~~d~ivv~D~G~~~~~~~~~~~~~--------~-------p~---~~~~~~~~gsmG~glpaai 428 (588)
T TIGR01504 369 VKPQRVYEEMNKAF--GRDVCYVTTIGLSQIAGAQMLHVY--------K-------PR---HWINCGQAGPLGWTIPAAL 428 (588)
T ss_pred cCHHHHHHHHHHhC--CCCCEEEECCcHHHHHHHHhcccc--------C-------CC---cEEeCCccccccchHhHHH
Confidence 55555555555444 4555 456888 445665444310 0 10 0011124588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++||+++|||+++ |...+|.+|.+++.|+++||.||+ |.+ + +..++..
T Consensus 429 Ga~lA----~pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg~--------------i-~~~q~~~-- 485 (588)
T TIGR01504 429 GVCAA----DPKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLGL--------------I-RQAQRAF-- 485 (588)
T ss_pred hhhhh----CCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHH--------------H-HHHHHHh--
Confidence 99999 4788999999999997 667899999999977666665555 532 0 0000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc--CCCCc
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGP 359 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~--~~~gP 359 (603)
+... . .+.... ...........+|+.+++|+||.+.. .|+ +.++|.++|+++.+. ..++|
T Consensus 486 --~~~~-------~--~~~~~~----~~~~~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~a~~~~~~~~~p 547 (588)
T TIGR01504 486 --DMDY-------C--VQLAFE----NINSSEVNGYGVDHVKVAEGLGCKAI-RVF--KPEEIAPAFEQAKALMAEHRVP 547 (588)
T ss_pred --cccc-------c--ceeecc----ccccccccCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHHHHHHhhcccCCCc
Confidence 0000 0 000000 00000000013577899999999998 664 899999999998741 02899
Q ss_pred EEEEEEeec
Q 007443 360 VLVHVVTEE 368 (603)
Q Consensus 360 ~lI~v~T~k 368 (603)
+||++.+.+
T Consensus 548 ~lIeV~i~~ 556 (588)
T TIGR01504 548 VVVEVILER 556 (588)
T ss_pred EEEEEEecc
Confidence 999999953
No 87
>PRK08611 pyruvate oxidase; Provisional
Probab=99.23 E-value=4e-10 Score=128.35 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=92.5
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||-|| ++.+
T Consensus 406 ~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g~------------ 467 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLAF------------ 467 (576)
T ss_pred CchhhhhhHHHHHHHHHh----CCCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 358999999999999998 4688999999999997 67789999999997765555555 4542
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+ +..+..+ +.. .+...+-.+++.+++++||.++. .| ++.++|.+++
T Consensus 468 --i-~~~q~~~-------------------~~~---------~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al 513 (576)
T PRK08611 468 --I-KYEQQAA-------------------GEL---------EYAIDLSDMDYAKFAEACGGKGY-RV--EKAEELDPAF 513 (576)
T ss_pred --H-HHHHHHh-------------------cCC---------cccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 0 0000000 000 00001113577899999999998 55 5899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALAQ--DKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHhC--CCCEEEEEEeCCcc
Confidence 999876 89999999997543
No 88
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.23 E-value=3.8e-10 Score=128.41 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=92.3
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|+++| .++++|||++|||+++ |...+|.+|.+++.|+++||-|| +|.+.
T Consensus 406 ~~G~mG~~lpaAiGa~la----~p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i----------- 468 (574)
T PRK09124 406 NHGSMANAMPQALGAQAA----HPGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGFV----------- 468 (574)
T ss_pred CcccccchHHHHHHHHHh----CCCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccccH-----------
Confidence 568899999999999998 4788999999999997 67788999999997765555555 45430
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+..... + +. ....-.+-.+++.+++++||+++. .|+ +.++|.+++
T Consensus 469 ----~~~~~~---------~----------~~---------~~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~al 513 (574)
T PRK09124 469 ----AMEMKA---------G----------GY---------LTDGTDLHNPDFAAIAEACGITGI-RVE--KASELDGAL 513 (574)
T ss_pred ----HHHHHh---------c----------CC---------ccccCcCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 000000 0 00 000001113477899999999998 665 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++.+. ++|++|++.+.+..
T Consensus 514 ~~a~~~--~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFAH--DGPALVDVVTAKQE 533 (574)
T ss_pred HHHHhC--CCCEEEEEEecCcc
Confidence 999876 89999999996443
No 89
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.23 E-value=3.7e-10 Score=127.82 Aligned_cols=125 Identities=13% Similarity=0.261 Sum_probs=92.0
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCC-CCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~-~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
..|+||.++++|+|.++| .+ +++|||++|||+++ +...+|.+|..++.|+++||-||+ +.+.
T Consensus 394 ~~g~mG~glpaaiGa~la----~p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i---------- 457 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFA----VENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGMI---------- 457 (549)
T ss_pred CcchhhhhHHHHHHHHhc----CCCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccchH----------
Confidence 468999999999999998 45 78999999999997 777899999999977666555555 5430
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+..++. .+.+ .....+..+++.+++++||+++. .|+ +.++|..+
T Consensus 458 -----~~~q~~-------------------~~~~---------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~a 501 (549)
T PRK06457 458 -----KFEQEV-------------------MGYP---------EWGVDLYNPDFTKIAESIGFKGF-RLE--EPKEAEEI 501 (549)
T ss_pred -----HHHHHH-------------------hcCC---------cccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 000000 0000 00001113577899999999999 665 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
++++.+. ++|++|+++|.+
T Consensus 502 l~~a~~~--~~p~lIeV~i~~ 520 (549)
T PRK06457 502 IEEFLNT--KGPAVLDAIVDP 520 (549)
T ss_pred HHHHHhC--CCCEEEEEEeCc
Confidence 9999876 899999999963
No 90
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.22 E-value=4.3e-10 Score=128.54 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=111.5
Q ss_pred cchHHHHHHHHhhccCCCcee-eecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKI-LWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~i-i~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....+...|...+ |.|.+ +.|.| |+.|...++.- ++ +. ........|+||.++++|+
T Consensus 366 l~p~~~~~~l~~~l--~~~~ivv~d~G~~~~~~~~~~~~--------~~-------~~---~~~~s~~~g~mG~glpaai 425 (597)
T PRK08273 366 VNPQRVFWELSPRL--PDNAILTADSGSCANWYARDLRM--------RR-------GM---MASLSGTLATMGPAVPYAI 425 (597)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEECCcHHHHHHHHhCCC--------CC-------CC---eEEecCccccccchHHHHH
Confidence 55555555554443 55664 46888 45565544331 00 00 0011124589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchH-HHHHHHhhhc-----CCCEEEEEECCC-CCcCCCccCCCcccchhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYL-----DSNMIVILNDSR-HSLHPKIEESPKTSINALSSTL 275 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~-----~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l 275 (603)
|.++| .++++|||++|||+++ |. .+.|.+|.++ +.|+++||-||+ |.+. +..
T Consensus 426 Ga~la----~p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i---------------~~~ 484 (597)
T PRK08273 426 AAKFA----HPDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQV---------------TWE 484 (597)
T ss_pred HHHHh----CCCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHH---------------HHH
Confidence 99999 4688999999999996 66 4789999988 777766666665 4320 000
Q ss_pred hhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC
Q 007443 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG 355 (603)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~ 355 (603)
++.. .+++.. .....+-..++..+.++||+++. .|+ +.++|..+++++.+.
T Consensus 485 q~~~------------------~~~~~~-------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~al~~a~~~- 535 (597)
T PRK08273 485 QRVM------------------EGDPKF-------EASQDLPDVPYARFAELLGLKGI-RVD--DPEQLGAAWDEALAA- 535 (597)
T ss_pred HHHh------------------cCCCcc-------cccccCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHHHHHHhC-
Confidence 0000 010000 00000112467899999999999 665 899999999999876
Q ss_pred CCCcEEEEEEeecCC
Q 007443 356 SMGPVLVHVVTEENR 370 (603)
Q Consensus 356 ~~gP~lI~v~T~kG~ 370 (603)
++|+||++.+.+..
T Consensus 536 -~~p~lIeV~~~~~~ 549 (597)
T PRK08273 536 -DRPVVLEVKTDPNV 549 (597)
T ss_pred -CCCEEEEEEeCCCC
Confidence 89999999996543
No 91
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.22 E-value=1.8e-10 Score=131.48 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=113.7
Q ss_pred cchHHHHHHHHhhccCCCceeee-cCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~-d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|..++ |+|.|++ |.| |+.|...++.- ++ |. ......+.|++|.++++|+
T Consensus 388 i~~~~~~~~l~~~l--~~d~ii~~d~G~~~~~~~~~~~~--------~~-------p~---~~~~~~~~gsmG~glpaai 447 (587)
T PRK06965 388 IKPQYVVEKLWELT--DGDAFVCSDVGQHQMWAAQFYRF--------NE-------PR---RWINSGGLGTMGVGLPYAM 447 (587)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEeCCcHHHHHHHHhccc--------CC-------CC---eEEcCCCcccccchHHHHH
Confidence 44445555555443 6777664 777 44455544331 11 00 1111234589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||.||+ |.+ + +..++.
T Consensus 448 Ga~lA----~p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~~--------------i-~~~q~~--- 503 (587)
T PRK06965 448 GIKMA----HPDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLGM--------------V-RQWQEI--- 503 (587)
T ss_pred HHHHh----CCCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcchH--------------H-HHHHHH---
Confidence 99999 4688999999999997 777899999999988777776666 322 0 000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC--CCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCc
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGP 359 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP 359 (603)
..+... ....+ .+++..+.++||+++. .|+ +.++|.++|+++.+. .++|
T Consensus 504 ---------------~~~~~~----------~~~~~~~~~d~~~iA~a~G~~~~-~v~--~~~eL~~al~~a~~~-~~~p 554 (587)
T PRK06965 504 ---------------EYSKRY----------SHSYMDALPDFVKLAEAYGHVGM-RIE--KTSDVEPALREALRL-KDRT 554 (587)
T ss_pred ---------------hcCCCc----------cccCCCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHHHHHHhc-CCCc
Confidence 000000 00011 2577899999999988 564 899999999999763 2689
Q ss_pred EEEEEEeecCC
Q 007443 360 VLVHVVTEENR 370 (603)
Q Consensus 360 ~lI~v~T~kG~ 370 (603)
+||++.+.+..
T Consensus 555 ~lieV~i~~~~ 565 (587)
T PRK06965 555 VFLDFQTDPTE 565 (587)
T ss_pred EEEEEEecccc
Confidence 99999997533
No 92
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.22 E-value=2.2e-10 Score=130.84 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=113.5
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+...+++..|..+++ ++|.+| .|.| |+.|...++.- ++ |. ......+.|++|.++++|+
T Consensus 380 l~~~~~~~~l~~~l~-~~d~iv~~d~G~~~~~~~~~~~~--------~~-------p~---~~~~~~~~gsmG~glpaai 440 (595)
T PRK09107 380 IMPQYAIQRLYELTK-GRDTYITTEVGQHQMWAAQFFGF--------EE-------PN---RWMTSGGLGTMGYGLPAAL 440 (595)
T ss_pred cCHHHHHHHHHHhCC-CCCeEEEECCcHHHHHHHHhccc--------CC-------CC---eEEcCCCchhhhhhHHHHH
Confidence 444455555544442 457654 5787 55566644431 11 00 1111234588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ +...+|.+|.+++.|+++||-||+ |.+ +
T Consensus 441 Ga~lA----~p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~~--------------i---------- 490 (595)
T PRK09107 441 GVQIA----HPDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMGM--------------V---------- 490 (595)
T ss_pred HHHHh----CCCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHH--------------H----------
Confidence 99998 5788999999999997 777889999999988777776666 432 0
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
|..+... .+.... .. + ..-.+++..+.++||.+.. +|+ +.++|.++|+++.+. ++|+|
T Consensus 491 ------~~~q~~~---~~~~~~----~~--~--~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~l 548 (595)
T PRK09107 491 ------RQWQQLL---HGNRLS----HS--Y--TEAMPDFVKLAEAYGAVGI-RCE--KPGDLDDAIQEMIDV--DKPVI 548 (595)
T ss_pred ------HHHHHHH---hCCccc----cc--c--CCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEE
Confidence 0000000 010000 00 0 0012577899999999998 664 899999999999876 89999
Q ss_pred EEEEeec
Q 007443 362 VHVVTEE 368 (603)
Q Consensus 362 I~v~T~k 368 (603)
|++.+.+
T Consensus 549 IeV~i~~ 555 (595)
T PRK09107 549 FDCRVAN 555 (595)
T ss_pred EEEEecC
Confidence 9999964
No 93
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.22 E-value=1e-10 Score=115.13 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=91.2
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccch
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSIN 269 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg 269 (603)
.|.+|.++++|+|.++| .++++||+++|||++. .+...+|.+|.+++.|+++||-||+ +.. .+.+....
T Consensus 50 ~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~-----~~~~~~~~ 119 (193)
T cd03375 50 HTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGL-----TKGQASPT 119 (193)
T ss_pred hhhhccHHHHHHHHHHh----CCCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCccccc-----CCCccCCC
Confidence 37899999999999998 5789999999999941 2556789999999999887777776 432 11000000
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
. + .+... ....+....-.+++..+.+++|++++..+...+.+++.++++
T Consensus 120 -----~--------~-------------~~~~~-----~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 168 (193)
T cd03375 120 -----T--------P-------------EGFKT-----KTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK 168 (193)
T ss_pred -----C--------C-------------CCCcc-----cCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH
Confidence 0 0 00000 000000000024567899999999874445679999999999
Q ss_pred HHHhcCCCCcEEEEEEee
Q 007443 350 EVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 350 ~a~~~~~~gP~lI~v~T~ 367 (603)
++.+. ++|++|++.+.
T Consensus 169 ~al~~--~gp~vIev~~~ 184 (193)
T cd03375 169 KAIQH--KGFSFVEVLSP 184 (193)
T ss_pred HHHhc--CCCEEEEEECC
Confidence 99886 89999999875
No 94
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.22 E-value=8.9e-11 Score=118.96 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=94.6
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccch
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg 269 (603)
+.|++|.++++|+|.+.+ .++++|||++|||++ -.+..++|.+|.+++.|+++||.||+.-- +++.+....
T Consensus 60 ~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~pv~~vVlNN~~yg----~tg~q~~~~ 130 (235)
T cd03376 60 NAAAVASGIEAALKALGR----GKDITVVAFAGDGGT-ADIGFQALSGAAERGHDILYICYDNEAYM----NTGIQRSGS 130 (235)
T ss_pred CHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchH-HhhHHHHHHHHHHcCCCeEEEEECCcccc----cCCCCCCCC
Confidence 347899999999987665 578899999999995 12667899999999999999999998421 111111000
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
.. .-.+.. ....+..++ + +..-.+++.++++++|++++.+++.++++++.++++
T Consensus 131 ~~--~~~~~~---------------~~~~g~~~~----~-----~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 184 (235)
T cd03376 131 TP--YGAWTT---------------TTPVGKVSF----G-----KKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVK 184 (235)
T ss_pred CC--CCCEee---------------cCCCCcccc----c-----cccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHH
Confidence 00 000000 000000000 0 000124678999999999986677889999999999
Q ss_pred HHHhcCCCCcEEEEEEee
Q 007443 350 EVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 350 ~a~~~~~~gP~lI~v~T~ 367 (603)
++.+. ++|+||++.+.
T Consensus 185 ~a~~~--~gP~lIev~~~ 200 (235)
T cd03376 185 KALSI--EGPAYIHILSP 200 (235)
T ss_pred HHHhC--CCCEEEEEECC
Confidence 99886 89999999985
No 95
>PRK05858 hypothetical protein; Provisional
Probab=99.22 E-value=5.2e-10 Score=126.45 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=113.7
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....+...|...+ |.|.+| .|.| |..|...++.- ++ |. +.....+.|++|+++++|+
T Consensus 358 l~~~~~~~~l~~~l--~~~~ivv~d~g~~~~~~~~~~~~--------~~-------p~---~~~~~~~~gsmG~~lp~ai 417 (542)
T PRK05858 358 IHPMRVYGELAPLL--DRDAIVIGDGGDFVSYAGRYIDP--------YR-------PG---CWLDPGPFGCLGTGPGYAL 417 (542)
T ss_pred cCHHHHHHHHHHhc--CCCeEEEECCcHHHHHHHHHccc--------cC-------CC---CEEeCCCccccccchhHHH
Confidence 45555555565554 566655 5676 44465543321 10 11 0111124588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ +....|.+|.+++.|+++||.||+ |.+ .
T Consensus 418 Ga~la----~p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~~--------------~---------- 467 (542)
T PRK05858 418 AARLA----RPSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWGL--------------E---------- 467 (542)
T ss_pred HHHHh----CCCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchhh--------------H----------
Confidence 99998 4788999999999998 777899999999988777766665 432 0
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
|..... ..+... ...+ -.+|+.++.++||.++. +|+ +.++|.++++++.+. ++|+
T Consensus 468 ------~~~~~~---~~~~~~----------~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~al~~a~~~--~~p~ 523 (542)
T PRK05858 468 ------KHPMEA---LYGYDV----------AADLRPGTRYDEVVRALGGHGE-LVT--VPAELGPALERAFAS--GVPY 523 (542)
T ss_pred ------HHHHHH---hcCCcc----------ccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCcE
Confidence 000000 001000 0011 13578899999999888 666 899999999999876 8999
Q ss_pred EEEEEeecCC
Q 007443 361 LVHVVTEENR 370 (603)
Q Consensus 361 lI~v~T~kG~ 370 (603)
||++.|.+..
T Consensus 524 lIev~~~~~~ 533 (542)
T PRK05858 524 LVNVLTDPSV 533 (542)
T ss_pred EEEEEECCCc
Confidence 9999997553
No 96
>PRK08266 hypothetical protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=131.88 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=93.6
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
..|++|.++++|+|++++ .++++|||++|||+++ +..++|.+|.+++.|+++||.|| +|.+.
T Consensus 400 ~~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~y~~~----------- 462 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNAYGNV----------- 462 (542)
T ss_pred CCcccccHHHHHHHHHHh----CCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHH-----------
Confidence 358999999999999888 5788999999999998 45689999999998877666555 45420
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+..++. ..++.. . . -.+-.+++..++++||+++. .|+ +.++|.+++
T Consensus 463 ----~~~~~~------------------~~~~~~------~--~-~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 508 (542)
T PRK08266 463 ----RRDQKR------------------RFGGRV------V--A-SDLVNPDFVKLAESFGVAAF-RVD--SPEELRAAL 508 (542)
T ss_pred ----HHHHHH------------------hcCCCc------c--c-CCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 000000 000000 0 0 00113467899999999998 666 799999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~G 371 (603)
+++.+. ++|++|++.|.++..
T Consensus 509 ~~a~~~--~~p~liev~i~~~~~ 529 (542)
T PRK08266 509 EAALAH--GGPVLIEVPVPRGSE 529 (542)
T ss_pred HHHHhC--CCcEEEEEEecCCCC
Confidence 999875 799999999987753
No 97
>PRK07524 hypothetical protein; Provisional
Probab=99.21 E-value=2.1e-10 Score=129.35 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=94.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+ |.+
T Consensus 405 ~~g~mG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~------------ 466 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGE------------ 466 (535)
T ss_pred CcccccchHHHHHHHHHh----CCCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHH------------
Confidence 458999999999999999 4788999999999997 666779999999988777766664 532
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+. +.+ +..+ . ...+ ...-.+|+..++++||+++. .|+ +.++|.+++
T Consensus 467 --i~----~~~------~~~~----~-~~~~--------------~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al 512 (535)
T PRK07524 467 --IR----RYM------VARD----I-EPVG--------------VDPYTPDFIALARAFGCAAE-RVA--DLEQLQAAL 512 (535)
T ss_pred --HH----HHH------HHhc----C-Cccc--------------cCCCCCCHHHHHHHCCCcEE-EeC--CHHHHHHHH
Confidence 00 000 0000 0 0000 01123567899999999998 675 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~G 371 (603)
+++.+. ++|++||+++.+-++
T Consensus 513 ~~a~~~--~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFAR--PGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhC--CCCEEEEEECCcccc
Confidence 999886 899999999987654
No 98
>PRK07586 hypothetical protein; Validated
Probab=99.21 E-value=3e-10 Score=127.54 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=89.0
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEE-ECCCCCcCCCccCCCcccchh
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVIL-NDSRHSLHPKIEESPKTSINA 270 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIl-ndN~~si~~t~~~g~s~~vg~ 270 (603)
|++|.++++|+|.++| .++++|||++|||+++ |..++|.+|.+++.|+++|| ||++|.+.
T Consensus 385 g~mG~~lpaaiGa~lA----~p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~------------- 445 (514)
T PRK07586 385 GAIGQGLPLATGAAVA----CPDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAYAIL------------- 445 (514)
T ss_pred cccccHHHHHHHHHHh----CCCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchhHHH-------------
Confidence 8899999999999999 4688999999999997 77899999999997765555 55556431
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC--CCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 271 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+...+.. . ..+.+.. ...+. ... .+++..+.++||+++. .|+ +.++|.+++
T Consensus 446 --~~~~~~~-------------~-~~~~~~~-------~~~~~-~~~~~~~d~~~lA~a~G~~~~-~V~--~~~el~~al 498 (514)
T PRK07586 446 --RGELARV-------------G-AGNPGPR-------ALDML-DLDDPDLDWVALAEGMGVPAR-RVT--TAEEFADAL 498 (514)
T ss_pred --HHHHHHh-------------c-CCCCCcc-------ccccc-cCCCCCCCHHHHHHHCCCcEE-EeC--CHHHHHHHH
Confidence 0000000 0 0000000 00000 011 2477899999999988 665 899999999
Q ss_pred HHHHhcCCCCcEEEEEEe
Q 007443 349 QEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T 366 (603)
+++.+. ++|+||++.+
T Consensus 499 ~~a~~~--~~p~liev~~ 514 (514)
T PRK07586 499 AAALAE--PGPHLIEAVV 514 (514)
T ss_pred HHHHcC--CCCEEEEEEC
Confidence 999876 8999999863
No 99
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.21 E-value=6.6e-10 Score=126.50 Aligned_cols=171 Identities=15% Similarity=0.132 Sum_probs=111.7
Q ss_pred cchHHHHHHHHhhccCCCcee-eecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKI-LWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~i-i~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....+...|...+ |.|.+ +.|.| |+.|...++.- ++.+ ........|+||+++++|+
T Consensus 359 i~~~~~~~~l~~~l--~~d~ii~~D~g~~~~~~~~~~~~--------~~~~----------~~~~~~~~gsmG~glpaAi 418 (575)
T TIGR02720 359 LQAYQVYRAINKIA--EDDAIYSIDVGDININSNRHLKM--------TPKN----------KWITSNLFATMGVGVPGAI 418 (575)
T ss_pred cCHHHHHHHHHHhC--CCCcEEEeCCcHHHHHHHHhCCc--------CCCC----------eEEcCCCcchhhchHHHHH
Confidence 45555555554444 55655 46887 55566544331 1000 0111224589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEE-EECCCCCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVI-LNDSRHSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivI-lndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++||+++|||+++ +...+|.+|..++.|+++| +|||+|.+. .+.|
T Consensus 419 Ga~la----~p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg~i------------------~~~~-- 472 (575)
T TIGR02720 419 AAKLN----YPDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYGFI------------------KDEQ-- 472 (575)
T ss_pred HHHHh----CCCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccHHH------------------HHHH--
Confidence 99988 5788999999999997 6778899999999776666 555556431 0000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHH--hcCCCCc
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGP 359 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~--~~~~~gP 359 (603)
+. .+.... . -.+-.+++.+++++||.++. .|+ +.++|.++++++. +. ++|
T Consensus 473 ----------~~----~~~~~~----~-----~~~~~~df~~iA~a~G~~~~-~v~--~~~el~~al~~a~~~~~--~~p 524 (575)
T TIGR02720 473 ----------ED----TNQPLI----G-----VDFNDADFAKIAEGVGAVGF-RVN--KIEQLPAVFEQAKAIKQ--GKP 524 (575)
T ss_pred ----------HH----hCCCcc----c-----ccCCCCCHHHHHHHCCCEEE-EeC--CHHHHHHHHHHHHhhCC--CCc
Confidence 00 000000 0 01113577899999999998 665 8999999999997 44 899
Q ss_pred EEEEEEeecC
Q 007443 360 VLVHVVTEEN 369 (603)
Q Consensus 360 ~lI~v~T~kG 369 (603)
+||++.+.+-
T Consensus 525 ~liev~i~~~ 534 (575)
T TIGR02720 525 VLIDAKITGD 534 (575)
T ss_pred EEEEEEeCCC
Confidence 9999999653
No 100
>PRK12474 hypothetical protein; Provisional
Probab=99.20 E-value=3.1e-10 Score=127.58 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=89.5
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchh
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINA 270 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ 270 (603)
|+||.++++|+|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||-||+ |.+.
T Consensus 389 gsmG~glpaAiGa~lA----~p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i------------- 449 (518)
T PRK12474 389 GSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAIL------------- 449 (518)
T ss_pred CccCccHHHHHHHHHH----CCCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHH-------------
Confidence 9999999999999999 4788999999999997 778999999999977666666665 5420
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHH-HhhhccCC--CChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD-EYARGMIG--PQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 271 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~--~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
|...+. .+.... .+.. .+. .+.. .++.++.++||++.. +|+ +.++|.++
T Consensus 450 -----------------~~~~~~----~~~~~~---~~~~~~~~-~~~~~~~d~~~lA~a~G~~~~-rv~--~~~eL~~a 501 (518)
T PRK12474 450 -----------------NGELQR----VGAQGA---GRNALSML-DLHNPELNWMKIAEGLGVEAS-RAT--TAEEFSAQ 501 (518)
T ss_pred -----------------HHHHHh----hcCCCC---Cccccccc-cCCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 000000 000000 0000 000 0111 367899999999988 666 79999999
Q ss_pred HHHHHhcCCCCcEEEEEEe
Q 007443 348 LQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T 366 (603)
++++.+. ++|++|++.+
T Consensus 502 l~~a~~~--~~p~liev~~ 518 (518)
T PRK12474 502 YAAAMAQ--RGPRLIEAMI 518 (518)
T ss_pred HHHHHcC--CCCEEEEEEC
Confidence 9999876 8999999874
No 101
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.20 E-value=4.7e-10 Score=126.97 Aligned_cols=127 Identities=17% Similarity=0.256 Sum_probs=92.3
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|.++| .++++|||++|||+++ +...+|.+|.+++.|+++||.||+ +.+
T Consensus 399 ~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~~------------ 460 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLGM------------ 460 (548)
T ss_pred chhhhhchHHHHHHHHHh----CCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHH------------
Confidence 458899999999999998 4688999999999997 666889999999988766666665 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+ +..++. ..+... .. -.+ -.+++..++++||+++. .|+ +.++|.++
T Consensus 461 --~-~~~~~~------------------~~~~~~-------~~--~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~a 507 (548)
T PRK08978 461 --V-RQWQQL------------------FFDERY-------SE--TDLSDNPDFVMLASAFGIPGQ-TIT--RKDQVEAA 507 (548)
T ss_pred --H-HHHHHH------------------HhCCcc-------ee--cCCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0 000000 000000 00 001 12477899999999999 664 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecC
Q 007443 348 LQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG 369 (603)
++++.+. ++|+||++.+.+.
T Consensus 508 l~~a~~~--~~p~lIeV~id~~ 527 (548)
T PRK08978 508 LDTLLNS--EGPYLLHVSIDEL 527 (548)
T ss_pred HHHHHhC--CCCEEEEEEecCc
Confidence 9999876 8999999999653
No 102
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.19 E-value=4.3e-10 Score=127.86 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=113.9
Q ss_pred cchHHHHHHHHhhccCCCceeeecC-CchH-HHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDV-GEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~-GH~a-Y~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|...++.|.|.+|++. |+.. ++..++. +++ |. +.....+.|++|.++++|+
T Consensus 373 l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~--------~~~-------p~---~~~~~~~~gsmG~glpaai 434 (569)
T PRK09259 373 MNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIID--------MYK-------PR---HRLDCGTWGVMGIGMGYAI 434 (569)
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcc--------cCC-------CC---ceEeCCCCccccccHHHHH
Confidence 5555566666666655668777654 4433 3332221 111 11 1111234589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
|.++| .+++|||++|||+++ |...+|.+|.+++.|+++||-||+--+. .. ++.
T Consensus 435 Ga~la-----~~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~------------~~----~~~---- 487 (569)
T PRK09259 435 AAAVE-----TGKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYR------------GD----DVN---- 487 (569)
T ss_pred HHHhc-----CCCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHH------------HH----HHH----
Confidence 99998 277899999999997 7778899999999998888888772110 00 000
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
. . .+... ..-.+ -.+++..++++||+++. +|+ +.++|.++++++.+. ++|+|
T Consensus 488 ----~-------~--~~~~~---------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~l 540 (569)
T PRK09259 488 ----L-------S--GAGDP---------SPTVLVHHARYDKMMEAFGGVGY-NVT--TPDELRHALTEAIAS--GKPTL 540 (569)
T ss_pred ----h-------h--cCCCc---------cccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEE
Confidence 0 0 00000 00011 13577899999999988 665 899999999999876 89999
Q ss_pred EEEEeecCC
Q 007443 362 VHVVTEENR 370 (603)
Q Consensus 362 I~v~T~kG~ 370 (603)
|++.+.+..
T Consensus 541 Iev~id~~~ 549 (569)
T PRK09259 541 INVVIDPAA 549 (569)
T ss_pred EEEEECCCC
Confidence 999997544
No 103
>PLN02470 acetolactate synthase
Probab=99.19 E-value=2.2e-10 Score=130.70 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=91.6
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ |...+|.+|..++.|+++||-|| +|.+.
T Consensus 424 ~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i----------- 486 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLGMV----------- 486 (585)
T ss_pred ccccccchHHHHHHHHHh----CCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHH-----------
Confidence 458999999999999999 4688999999999997 77789999999997766555555 45320
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHh-hhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY-ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
. +.| +.. .+...... ..... ......+++..++++||+++. .|+ +.++|.++
T Consensus 487 ----~---~~~------------~~~---~~~~~~~~--~~~~~~~~~~~~~d~~~iA~a~G~~~~-~v~--~~~el~~a 539 (585)
T PLN02470 487 ----V---QWE------------DRF---YKANRAHT--YLGDPDAEAEIFPDFLKFAEGCKIPAA-RVT--RKSDLREA 539 (585)
T ss_pred ----H---HHH------------HHH---hCCceeee--ecCccccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0 000 000 00000000 00000 000012467899999999988 554 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecC
Q 007443 348 LQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG 369 (603)
++++.+. ++|+|||+.+.+-
T Consensus 540 l~~a~~~--~~p~lieV~i~~~ 559 (585)
T PLN02470 540 IQKMLDT--PGPYLLDVIVPHQ 559 (585)
T ss_pred HHHHHhC--CCCEEEEEEeCCc
Confidence 9999876 8999999999643
No 104
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.18 E-value=2.6e-10 Score=129.51 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=91.3
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ +...+|.+|.+++.|+++||.||+ |.+..
T Consensus 417 ~~g~mG~~lpaaiGa~la----~~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~---------- 480 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALA----NPERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVH---------- 480 (564)
T ss_pred CcccccchhHHHHHHHHh----CCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccH----------
Confidence 458899999999999999 4678999999999998 556779999999988777666665 54310
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
..++.+ .+.... ...+ -..++.+++++||++++ .|+ +.+++.++
T Consensus 481 -----~~q~~~------------------~~~~~~---------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 525 (564)
T PRK08155 481 -----QQQSLF------------------YGQRVF---------AATYPGKINFMQIAAGFGLETC-DLN--NEADPQAA 525 (564)
T ss_pred -----HHHHHh------------------cCCCee---------eccCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 000000 000000 0000 12467889999999998 555 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
++++.+. ++|++|++.+.+
T Consensus 526 l~~a~~~--~~p~lIeV~~~~ 544 (564)
T PRK08155 526 LQEAINR--PGPALIHVRIDA 544 (564)
T ss_pred HHHHHhC--CCCEEEEEEeCC
Confidence 9999876 899999999964
No 105
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.18 E-value=4.5e-10 Score=126.65 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=89.5
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccch
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSIN 269 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg 269 (603)
.|++|+++++|+|+++| .++++|||++|||+++.+ .++|.+|.+++.|+++||.||+ |.+.
T Consensus 406 ~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~------------ 467 (530)
T PRK07092 406 SGGLGYGLPAAVGVALA----QPGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGAL------------ 467 (530)
T ss_pred CCcccchHHHHHHHHHh----CCCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHH------------
Confidence 58899999999999998 367899999999999844 5899999999988766666666 6431
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
+.+++.. ..++.. + -.+-..++.+++++||+++. .|+ +.+++.++++
T Consensus 468 ---~~~~~~~-----------------~~~~~~---------~-~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~al~ 514 (530)
T PRK07092 468 ---RWFAPVF-----------------GVRDVP---------G-LDLPGLDFVALARGYGCEAV-RVS--DAAELADALA 514 (530)
T ss_pred ---HHHHHhh-----------------CCCCCC---------C-CCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHH
Confidence 0000000 000000 0 00112356889999999998 666 7999999999
Q ss_pred HHHhcCCCCcEEEEEEe
Q 007443 350 EVASLGSMGPVLVHVVT 366 (603)
Q Consensus 350 ~a~~~~~~gP~lI~v~T 366 (603)
++.+. ++|++|++.|
T Consensus 515 ~a~~~--~~p~liev~~ 529 (530)
T PRK07092 515 RALAA--DGPVLVEVEV 529 (530)
T ss_pred HHHhC--CCCEEEEEEc
Confidence 99875 8999999986
No 106
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.18 E-value=7.3e-10 Score=125.59 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=112.1
Q ss_pred cchHHHHHHHHhhccCCCceeeecC-CchH-HHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDV-GEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~-GH~a-Y~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|...+..+.|.+|.+. |+.. ++..++. +++ |. +.......|+||.++++|+
T Consensus 366 l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~--------~~~-------p~---~~~~~~~~gsmG~~lpaai 427 (554)
T TIGR03254 366 MNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVID--------MYK-------PR---HRLDVGTWGVMGIGMGYAI 427 (554)
T ss_pred cCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcc--------cCC-------CC---cEeeCCCCCcCCchHHHHH
Confidence 5555666666666654567777654 4333 4443322 111 11 1111224589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
|.++| .+++|||++|||+++ |..++|.+|.+++.|+++||-||+.-.. + . +
T Consensus 428 Gaala-----~~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~-----~-------~-------~--- 478 (554)
T TIGR03254 428 AAAVE-----TGKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR-----G-------D-------D--- 478 (554)
T ss_pred HHHhc-----CCCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh-----h-------h-------h---
Confidence 99998 268899999999997 7778899999999888777777762110 0 0 0
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
.. ..+... . + -.+ -.+++..+.++||.+.. .|+ +.++|.++++++.+. ++|+|
T Consensus 479 ----~~--------~~~~~~------~--~-~~~~~~~df~~la~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~l 532 (554)
T TIGR03254 479 ----VN--------VVGADP------A--P-TVLVHGARYDKMMKAFGGVGY-NVT--TPDELKAALNEALAS--GKPTL 532 (554)
T ss_pred ----hh--------hcCCCC------C--c-cccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEE
Confidence 00 000000 0 0 001 13467899999999988 564 899999999999876 89999
Q ss_pred EEEEeecC
Q 007443 362 VHVVTEEN 369 (603)
Q Consensus 362 I~v~T~kG 369 (603)
|++.+.+.
T Consensus 533 Iev~id~~ 540 (554)
T TIGR03254 533 INAVIDPS 540 (554)
T ss_pred EEEEECCC
Confidence 99998643
No 107
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.18 E-value=3e-10 Score=129.20 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=92.1
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ |...+|.+|..++.|+++||.||+ |.+.
T Consensus 419 ~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i----------- 481 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLGLV----------- 481 (572)
T ss_pred CcccccchhHHHHHHHHh----CCCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchHHH-----------
Confidence 458999999999999999 4678999999999997 666889999999988766666665 4420
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+ ..|. .. .++... . ..+ -.+++..+.++||.++. .| ++.++|.++
T Consensus 482 ----~---~~q~-~~--------------~~~~~~----~-----~~~~~~~d~~~~A~a~G~~~~-~v--~~~~eL~~a 527 (572)
T PRK06456 482 ----R---QVQD-LF--------------FGKRIV----G-----VDYGPSPDFVKLAEAFGALGF-NV--TTYEDIEKS 527 (572)
T ss_pred ----H---HHHH-Hh--------------hCCCcc----c-----ccCCCCCCHHHHHHHCCCeeE-Ee--CCHHHHHHH
Confidence 0 0000 00 000000 0 001 12477899999999988 55 489999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
|+++.+. ++|+||++.+.+
T Consensus 528 l~~a~~~--~~p~lIev~v~~ 546 (572)
T PRK06456 528 LKSAIKE--DIPAVIRVPVDK 546 (572)
T ss_pred HHHHHhC--CCCEEEEEEeCc
Confidence 9999876 899999999965
No 108
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.17 E-value=4.7e-10 Score=127.81 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=92.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||-||+ |.+
T Consensus 428 ~~g~mG~~lpaaiGa~la----~p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg~------------ 489 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWGA------------ 489 (579)
T ss_pred ccccccchHHHHHhhhhh----CCCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchHH------------
Confidence 458999999999999998 4688999999999997 667899999999977666655555 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCC-CChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG-PQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+ +. .+ ... .+.... .. .+-. +++.++.++||.++. .| .+.++|..+
T Consensus 490 --i-~~---~~-~~~--------------~~~~~~----~~-----~~~~~~d~~~lA~a~G~~g~-~v--~~~~el~~a 536 (579)
T TIGR03457 490 --E-KK---NQ-VDF--------------YNNRFV----GT-----ELESELSFAGIADAMGAKGV-VV--DKPEDVGPA 536 (579)
T ss_pred --H-HH---HH-HHh--------------hCCcce----ec-----cCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHH
Confidence 0 00 00 000 000000 00 0112 377899999999998 55 489999999
Q ss_pred HHHHHhc-CCCCcEEEEEEeecCCC
Q 007443 348 LQEVASL-GSMGPVLVHVVTEENRR 371 (603)
Q Consensus 348 l~~a~~~-~~~gP~lI~v~T~kG~G 371 (603)
|+++.+. ..++|+||++.+.+-.+
T Consensus 537 l~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 537 LKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 9998752 12789999999976543
No 109
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.17 E-value=6e-10 Score=126.70 Aligned_cols=171 Identities=14% Similarity=0.194 Sum_probs=113.1
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|..++ |.|.+| .|.| |..|...++. +++ |. +.....+.|++|.++++|+
T Consensus 373 l~~~~~~~~l~~~l--~~d~iiv~d~g~~~~~~~~~~~--------~~~-------p~---~~~~~~~~gsmG~~lp~ai 432 (570)
T PRK06725 373 LKPQHVINLVSELT--NGEAIVTTEVGQHQMWAAHFYK--------AKN-------PR---TFLTSGGLGTMGFGFPAAI 432 (570)
T ss_pred cCHHHHHHHHHhhC--CCCcEEEeCCcHHHHHHHHhcc--------ccC-------CC---eEEccCCcccccchhhHHH
Confidence 55556665565554 556654 5777 4445553332 011 00 1111234589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~-si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+. .+ + ...++.
T Consensus 433 Ga~lA----~p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~--------------~-~~~q~~--- 488 (570)
T PRK06725 433 GAQLA----KEEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGM--------------V-RQWQEM--- 488 (570)
T ss_pred hhHhh----cCCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHH--------------H-HHHHHH---
Confidence 99998 4788999999999996 6677899999999888887777763 21 0 000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
..+... . ...+-.+++.++.++||.+.. .| .+.+++.++++++.+. ++|++
T Consensus 489 ---------------~~~~~~-------~--~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al~~a~~~--~~p~l 539 (570)
T PRK06725 489 ---------------FYENRL-------S--ESKIGSPDFVKVAEAYGVKGL-RA--TNSTEAKQVMLEAFAH--EGPVV 539 (570)
T ss_pred ---------------hcCCcc-------c--cCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEE
Confidence 000000 0 000113467899999999998 66 4899999999999886 89999
Q ss_pred EEEEeec
Q 007443 362 VHVVTEE 368 (603)
Q Consensus 362 I~v~T~k 368 (603)
|++.+..
T Consensus 540 iev~id~ 546 (570)
T PRK06725 540 VDFCVEE 546 (570)
T ss_pred EEEEeCC
Confidence 9999964
No 110
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.16 E-value=6.4e-10 Score=126.57 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=112.4
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|... .|+|.|| .|.| |..|...++.-+ + |. ......+.|++|.++++|+
T Consensus 374 l~~~~~~~~l~~~--l~~~~iv~~d~g~~~~~~~~~~~~~--------~-------p~---~~~~~~~~gsmG~glpaAi 433 (574)
T PRK06466 374 IKPQQVVETLYEV--TNGDAYVTSDVGQHQMFAAQYYKFN--------K-------PN---RWINSGGLGTMGFGLPAAM 433 (574)
T ss_pred cCHHHHHHHHHhh--CCCCeEEEECCcHHHHHHHHhcccc--------C-------CC---cEEcCCCcchhhchHHHHH
Confidence 4555555555554 3567665 4777 455655444311 0 00 0111234589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ +....|.+|..++.|+++||-||+ |.+. +..++.
T Consensus 434 Ga~la----~p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i---------------~~~q~~--- 489 (574)
T PRK06466 434 GVKLA----FPDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALGMV---------------RQWQDM--- 489 (574)
T ss_pred HHHHh----CCCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHH---------------HHHHHH---
Confidence 99999 4688999999999997 777899999999988666655555 5430 000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
. .++.. . ...+ -.+++..++++||.++. .|+ +.++|.++|+++.+. .++|+
T Consensus 490 ------------~---~~~~~-------~--~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~-~~~p~ 541 (574)
T PRK06466 490 ------------Q---YEGRH-------S--HSYMESLPDFVKLAEAYGHVGI-RIT--DLKDLKPKLEEAFAM-KDRLV 541 (574)
T ss_pred ------------h---cCCce-------e--ecCCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhc-CCCcE
Confidence 0 00000 0 0000 12477899999999988 554 899999999998763 27899
Q ss_pred EEEEEeecC
Q 007443 361 LVHVVTEEN 369 (603)
Q Consensus 361 lI~v~T~kG 369 (603)
||++.+.+.
T Consensus 542 lIev~i~~~ 550 (574)
T PRK06466 542 FIDIYVDRS 550 (574)
T ss_pred EEEEEeCCc
Confidence 999999753
No 111
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.16 E-value=7.2e-10 Score=125.89 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=111.5
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+...+++..|...+ |.|.++ .|.| |..|...++.- ++ |. +.....+.|++|.++++|+
T Consensus 365 i~~~~~~~~l~~~l--~~d~iv~~d~g~~~~~~~~~~~~--------~~-------~~---~~~~~~~~g~mG~~l~~ai 424 (563)
T PRK08527 365 LKPQWVIERVGELL--GDDAIISTDVGQHQMWVAQFYPF--------NY-------PR---QLATSGGLGTMGYGLPAAL 424 (563)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEECCcHHHHHHHHhccc--------CC-------CC---eEEcCCCcccccchHHHHH
Confidence 44445555555454 566644 5888 55555543321 11 00 1111234589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ |...+|.+|..++.|+++||.||+ +.+. +.+++..
T Consensus 425 Ga~la----~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i---------------~~~~~~~-- 481 (563)
T PRK08527 425 GAKLA----VPDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLGMV---------------RQWQTFF-- 481 (563)
T ss_pred HHHHh----CCCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcchhH---------------HHHHHhh--
Confidence 99998 4678899999999998 566779999999988776666665 4320 0000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
.+.... .. .+ ..+++.+++++||+++. .|+ +.++|.++|+++.+. ++|+
T Consensus 482 ----------------~~~~~~----~~-----~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~ 531 (563)
T PRK08527 482 ----------------YEERYS----ET-----DLSTQPDFVKLAESFGGIGF-RVT--TKEEFDKALKEALES--DKVA 531 (563)
T ss_pred ----------------cCCcee----ec-----cCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCE
Confidence 000000 00 00 12467889999999988 554 899999999999876 8999
Q ss_pred EEEEEeecCC
Q 007443 361 LVHVVTEENR 370 (603)
Q Consensus 361 lI~v~T~kG~ 370 (603)
|||+.+.+..
T Consensus 532 lieV~v~~~~ 541 (563)
T PRK08527 532 LIDVKIDRFE 541 (563)
T ss_pred EEEEEECCcc
Confidence 9999997643
No 112
>PRK07064 hypothetical protein; Provisional
Probab=99.16 E-value=3.1e-10 Score=128.22 Aligned_cols=126 Identities=24% Similarity=0.311 Sum_probs=91.8
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchh
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINA 270 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ 270 (603)
|++|.++|+|+|.++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+ |.+.
T Consensus 405 g~mG~~lpaAiGa~lA----~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~------------- 465 (544)
T PRK07064 405 GGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGYGVI------------- 465 (544)
T ss_pred Cccccccchhhhhhhh----CcCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChhHHH-------------
Confidence 7899999999999999 4688999999999997 777899999999988766655555 5320
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHH
Q 007443 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (603)
Q Consensus 271 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~ 350 (603)
+.+++. + .+.. ...-.+-.+++.+++++||+++. .|+ +.++|.+++++
T Consensus 466 --~~~~~~---------~---------~~~~---------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~al~~ 513 (544)
T PRK07064 466 --RNIQDA---------Q---------YGGR---------RYYVELHTPDFALLAASLGLPHW-RVT--SADDFEAVLRE 513 (544)
T ss_pred --HHHHHH---------h---------cCCc---------cccccCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHH
Confidence 000000 0 0000 00001113577899999999988 564 89999999999
Q ss_pred HHhcCCCCcEEEEEEeecCC
Q 007443 351 VASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 351 a~~~~~~gP~lI~v~T~kG~ 370 (603)
+.+. ++|++|++.+....
T Consensus 514 a~~~--~~p~lIeV~~~~~~ 531 (544)
T PRK07064 514 ALAK--EGPVLVEVDMLSIG 531 (544)
T ss_pred HHcC--CCCEEEEEEccccc
Confidence 9875 89999999986333
No 113
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.15 E-value=6.8e-10 Score=115.65 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=109.7
Q ss_pred CcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCc
Q 007443 188 PFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPK 265 (603)
Q Consensus 188 ~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s 265 (603)
.+..+.+|.+++.|.|++.|.+..+++.+|||++|||++. -| +++|.+|.+.+.|+++||-||+.-.+ |+. ..++
T Consensus 65 ~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~n-TGgQ~S~~ 141 (299)
T PRK11865 65 PWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYMN-TGIQRSGS 141 (299)
T ss_pred ccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccccC-CCCCCCCC
Confidence 3567778999999999999988777778999999999874 45 48999999999999999999995321 222 2223
Q ss_pred ccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHH
Q 007443 266 TSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (603)
Q Consensus 266 ~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~ 345 (603)
+|.|+.++.- ..|+... . +..-.-+...++.++|..|+..++-.|+.++.
T Consensus 142 Tp~Ga~t~ts---------------------p~Gk~~~---G------~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~ 191 (299)
T PRK11865 142 TPFGASTTTS---------------------PAGKYSR---G------EDRPKKNMPLIMAAHGIPYVATASIGYPEDFM 191 (299)
T ss_pred CCCCcccccC---------------------CCCcccC---C------CCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHH
Confidence 3344332111 0111000 0 00001134577889999999888999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEee--cCCCCCcc
Q 007443 346 SVLQEVASLGSMGPVLVHVVTE--ENRRAEDT 375 (603)
Q Consensus 346 ~al~~a~~~~~~gP~lI~v~T~--kG~G~~~a 375 (603)
+++++|.+. +||.+||+.+. .|+|+.+.
T Consensus 192 ~~i~~A~~~--~Gps~I~v~sPC~~~~~~~~~ 221 (299)
T PRK11865 192 EKVKKAKEV--EGPAYIQVLQPCPTGWGFPPE 221 (299)
T ss_pred HHHHHHHhC--CCCEEEEEECCCCCCCCCCHH
Confidence 999999987 89999999985 57776654
No 114
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.15 E-value=4.2e-10 Score=114.24 Aligned_cols=140 Identities=18% Similarity=0.258 Sum_probs=91.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHc-CCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIK-GKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~-g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++|+.-. .++++|||+.|||++.. +.+..+.++..++.|+++||-||+.-- +.+.+...
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg----~~~~q~~~ 136 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYS----NTGGQRSG 136 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCcccc----CCCCCCCC
Confidence 4589999999999998873211 25789999999998741 123467778888899888888887321 11111100
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
. .. .++.. .........-.+|+.++++++|++++..+.-.+++++.++|
T Consensus 137 ~---~~-----------------------~g~~~-----~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al 185 (237)
T cd02018 137 A---TP-----------------------LGADS-----KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVV 185 (237)
T ss_pred C---Cc-----------------------CCCcc-----cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHH
Confidence 0 00 00000 00000000113467899999999998655556899999999
Q ss_pred HHHHh-cCCCCcEEEEEEee
Q 007443 349 QEVAS-LGSMGPVLVHVVTE 367 (603)
Q Consensus 349 ~~a~~-~~~~gP~lI~v~T~ 367 (603)
+++.+ . +||++|++.+.
T Consensus 186 ~~al~~~--~GP~lI~v~i~ 203 (237)
T cd02018 186 KEAISRT--DGPTFIHAYTP 203 (237)
T ss_pred HHHHhcC--CCCEEEEEeCC
Confidence 99986 6 89999999974
No 115
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.15 E-value=2e-10 Score=129.79 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=89.3
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCE-EEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNM-IVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nl-ivIlndN~~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|+++| .++++|||++|||+++ |..++|.+|..++.|+ +||+||++|.+.-
T Consensus 402 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~---------- 465 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVER---------- 465 (539)
T ss_pred hhhhhhhHHHHHHHHHhc----CCCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEE----------
Confidence 468899999999999998 4788999999999997 8889999999999665 5555555565310
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe----EEeecCCCCHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY----YIGPVDGHNIEDL 344 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~----~ig~vDGhD~~~l 344 (603)
. .+ +.... + ..+-.+++..+.++||.+ +. .| .+.++|
T Consensus 466 -----~---~~-----------------~~~~~----------~-~~~~~~df~~la~a~G~~~~~~~~-~v--~~~~el 506 (539)
T TIGR03393 466 -----A---IH-----------------GAEQR----------Y-NDIALWNWTHLPQALSLDPQSECW-RV--SEAEQL 506 (539)
T ss_pred -----e---ec-----------------CCCCC----------c-CcCCCCCHHHHHHHcCCCCccceE-Ee--ccHHHH
Confidence 0 00 00000 0 001124678899999985 56 45 489999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEee
Q 007443 345 ISVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 345 ~~al~~a~~~~~~gP~lI~v~T~ 367 (603)
.++++++.+. ++|+||++.+.
T Consensus 507 ~~al~~a~~~--~~p~liev~i~ 527 (539)
T TIGR03393 507 ADVLEKVAAH--ERLSLIEVVLP 527 (539)
T ss_pred HHHHHHHhcc--CCeEEEEEEcC
Confidence 9999999876 89999999984
No 116
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.15 E-value=9.2e-10 Score=125.31 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=112.2
Q ss_pred cchHHHHHHHHhhccCCCce-eeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~-ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+....++..|..++ |.|. ++.|.| |+.|...++.- ++ + .......+.|++|.++++|+
T Consensus 372 i~~~~~~~~l~~~l--~~d~ivv~d~G~~~~~~~~~~~~--------~~---------p-~~~~~~~~~g~mG~glpaai 431 (574)
T PRK07979 372 IKPQAVIETLWRLT--KGDAYVTSDVGQHQMFAALYYPF--------DK---------P-RRWINSGGLGTMGFGLPAAL 431 (574)
T ss_pred cCHHHHHHHHHhhc--CCCEEEEeCCcHHHHHHHHhccc--------CC---------C-CeEEeCCCccchhhHHHHHH
Confidence 55566666665543 4555 456887 45565543321 11 0 01111224588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|+++| .++++|||++|||+++ |...+|.+|.+++.|+++||.||+ |.+ + ...|
T Consensus 432 Ga~la----~p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~yg~--------------i----~~~q-- 485 (574)
T PRK07979 432 GVKMA----LPEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYLGM--------------V----KQWQ-- 485 (574)
T ss_pred HHHHh----CCCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchhhH--------------H----HHHH--
Confidence 99999 4688999999999997 777899999999988766666665 432 0 0000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC-CCCc
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMGP 359 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~-~~gP 359 (603)
+.. .++... . ..+ -.+|+.++.++||.+.. .|+ +.++|.++++++.+.. .++|
T Consensus 486 ----------~~~---~~~~~~------~---~~~~~~~d~~~iA~a~G~~g~-~v~--~~~eL~~al~~a~~~~~~~~p 540 (574)
T PRK07979 486 ----------DMI---YSGRHS------Q---SYMQSLPDFVRLAEAYGHVGI-QIS--HPDELESKLSEALEQVRNNRL 540 (574)
T ss_pred ----------HHh---cCCccc------c---ccCCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHHHHHHhccCCCCc
Confidence 000 000000 0 000 12577899999999988 554 8999999999987631 2789
Q ss_pred EEEEEEeec
Q 007443 360 VLVHVVTEE 368 (603)
Q Consensus 360 ~lI~v~T~k 368 (603)
.||++.+.+
T Consensus 541 ~lIeV~i~~ 549 (574)
T PRK07979 541 VFVDVTVDG 549 (574)
T ss_pred EEEEEEECC
Confidence 999999964
No 117
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.15 E-value=7.6e-10 Score=126.27 Aligned_cols=129 Identities=17% Similarity=0.268 Sum_probs=93.1
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~ 267 (603)
.+.|++|.++++|+|.++| .++++|||++|||+++ +...+|.+|.+++.|+++||.||+ |.+
T Consensus 427 ~~~g~mG~glpaaiGaala----~p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~----------- 489 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGM----------- 489 (585)
T ss_pred ccccchhhhHHHHHHHHHh----CCCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchH-----------
Confidence 3568999999999999999 4678999999999997 777899999999988777777776 322
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+ ...| +.. .+.... .. + . ..-.+++..+.++||.++. .|+ +.++|.++
T Consensus 490 ---i----~~~q------------~~~---~~~~~~----~~-~-~-~~~~~d~~~la~a~G~~~~-~v~--~~~el~~a 537 (585)
T CHL00099 490 ---V----RQWQ------------QAF---YGERYS----HS-N-M-EEGAPDFVKLAEAYGIKGL-RIK--SRKDLKSS 537 (585)
T ss_pred ---H----HHHH------------HHh---cCCCcc----cc-c-C-CCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHH
Confidence 0 0000 000 000000 00 0 0 0002467889999999998 665 79999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
++++.+. +||.|||++|..
T Consensus 538 l~~a~~~--~~p~liev~v~~ 556 (585)
T CHL00099 538 LKEALDY--DGPVLIDCQVIE 556 (585)
T ss_pred HHHHHhC--CCCEEEEEEECC
Confidence 9999876 899999999964
No 118
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.15 E-value=7.8e-10 Score=125.56 Aligned_cols=126 Identities=14% Similarity=0.185 Sum_probs=91.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ +...+|.+|.+++.|+++||-||+ |.+
T Consensus 412 ~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~------------ 473 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYLGM------------ 473 (561)
T ss_pred CccccccHHHHHHHHHHh----CCCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCccHH------------
Confidence 458899999999999998 4678999999999997 777899999999977666655554 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+ + ..| +.. .+... . .. .+ -.+++.++.++||+++. .|+ +.++|.++
T Consensus 474 --i-~---~~~------------~~~---~~~~~------~--~~-~~~~~~d~~~lA~a~G~~~~-~v~--t~~el~~a 520 (561)
T PRK06048 474 --V-R---QWQ------------ELF---YDKRY------S--HT-CIKGSVDFVKLAEAYGALGL-RVE--KPSEVRPA 520 (561)
T ss_pred --H-H---HHH------------HHH---cCCcc------c--cc-CCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0 0 000 000 00000 0 00 01 13477899999999998 555 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
|+++.+. ++|+||++.+.+
T Consensus 521 l~~a~~~--~~p~liev~~~~ 539 (561)
T PRK06048 521 IEEAVAS--DRPVVIDFIVEC 539 (561)
T ss_pred HHHHHhC--CCCEEEEEEecC
Confidence 9999876 899999999964
No 119
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.15 E-value=7e-10 Score=127.32 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=113.5
Q ss_pred cchHHHHHHHHhhccCCCceeeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....++..|...+ |...++.|.| |+.|...++.- + |. +.......|.||.++++|+|
T Consensus 387 l~~~~v~~~l~~~~--~d~i~~~D~G~~~~~~~~~~~~--------~--------p~---~~~~s~~~g~mG~glpaAiG 445 (616)
T PRK07418 387 IYPQEVLLAVRDLA--PDAYYTTDVGQHQMWAAQFLRN--------G--------PR---RWISSAGLGTMGFGMPAAMG 445 (616)
T ss_pred cCHHHHHHHHHhhC--CCcEEEECChHHHHHHHHhhhc--------C--------CC---eEEcCCCccccccHHHHHHH
Confidence 55555655555544 4445566988 44455443320 0 11 11112346889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
.++| .++++|||++|||+++ |....|.+|.+++.|+++||.||+ +.+ + +..++..
T Consensus 446 A~lA----~p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~--------------i-~~~q~~~--- 501 (616)
T PRK07418 446 VKVA----LPDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGM--------------V-RQWQESF--- 501 (616)
T ss_pred HHHh----CCCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchH--------------H-HHHHHHh---
Confidence 9998 4788999999999997 777889999999988877777776 321 0 0000000
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc--CCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
.+... ....+ -.+++..+.++||.+++ .|+ +.++|.++|+++.+. ++|+
T Consensus 502 ---------------~~~~~---------~~~~~~~~~~d~~~~A~a~G~~g~-~V~--~~~el~~al~~a~~~--~~p~ 552 (616)
T PRK07418 502 ---------------YGERY---------SASNMEPGMPDFVKLAEAFGVKGM-VIS--ERDQLKDAIAEALAH--DGPV 552 (616)
T ss_pred ---------------cCCCc---------eeecCCCCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCCE
Confidence 00000 00001 12467899999999998 665 899999999999876 8999
Q ss_pred EEEEEeecC
Q 007443 361 LVHVVTEEN 369 (603)
Q Consensus 361 lI~v~T~kG 369 (603)
||++.+.+.
T Consensus 553 lIeV~i~~~ 561 (616)
T PRK07418 553 LIDVHVRRD 561 (616)
T ss_pred EEEEEecCc
Confidence 999999643
No 120
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.14 E-value=1.1e-09 Score=124.69 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=111.5
Q ss_pred cchHHHHHHHHhhccCCCce-eeecCCch-HHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDK-ILWDVGEQ-TYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~-ii~d~GH~-aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+...+++..|..++ |.|. ++.|.|.. .|...++.- ++.. .| ....+.|++|.++++|+
T Consensus 372 i~~~~~~~~l~~~l--~~d~ivv~d~G~~~~~~~~~~~~--------~~~~---~~-------~~~~~~g~mG~glpaai 431 (572)
T PRK08979 372 IKPQQVIETLYKLT--NGDAYVASDVGQHQMFAALYYPF--------DKPR---RW-------INSGGLGTMGFGLPAAM 431 (572)
T ss_pred cCHHHHHHHHHHhc--CCCeEEEECCcHHHHHHHHhcCc--------CCCC---eE-------EccCCcccccchhhHHH
Confidence 55556666665543 5565 45688853 455543331 1100 01 11124588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ |...+|.+|.+++.|+++||.||+ |.+ + +..++.
T Consensus 432 Ga~la----~p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~--------------i-~~~q~~--- 487 (572)
T PRK08979 432 GVKFA----MPDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFLGM--------------V-KQWQDM--- 487 (572)
T ss_pred hhhhh----CCCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCccHH--------------H-HHHHHH---
Confidence 99999 4788999999999997 777899999999977666666555 432 0 000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
. .++.. ...+. ...+++.++.|+||.+.. .|+ +.++|.++|+++.+. .++|+|
T Consensus 488 ------------~---~~~~~------~~~~~--~~~~d~~~~A~a~G~~~~-~v~--~~~eL~~al~~a~~~-~~~p~l 540 (572)
T PRK08979 488 ------------I---YQGRH------SHSYM--DSVPDFAKIAEAYGHVGI-RIS--DPDELESGLEKALAM-KDRLVF 540 (572)
T ss_pred ------------H---hCCcc------cccCC--CCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhc-CCCcEE
Confidence 0 00000 00000 012577899999999988 555 899999999998763 278999
Q ss_pred EEEEeec
Q 007443 362 VHVVTEE 368 (603)
Q Consensus 362 I~v~T~k 368 (603)
|++.+.+
T Consensus 541 Iev~i~~ 547 (572)
T PRK08979 541 VDINVDE 547 (572)
T ss_pred EEEEeCC
Confidence 9999864
No 121
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.14 E-value=7.1e-10 Score=126.63 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=91.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|++|.++++|+|+++| .++++|||++|||+++ +...+|.+|.+++.|+++||.||+ |.+
T Consensus 417 ~~G~mG~glpaAiGa~la----~p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~------------ 478 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAA----DPDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLGL------------ 478 (591)
T ss_pred ccccccchhhhHHhhhhh----CCCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchhH------------
Confidence 468999999999999998 4688999999999997 667789999999988766666666 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+.+++. |. .+...... ...+...-...-.+++..+.++||.++. .| ++.++|.+++
T Consensus 479 ---i~~~~~~-----~~----------~~~~~~~~--~~~~~~~~~~~~~~df~~lA~a~G~~~~-~v--~~~~eL~~al 535 (591)
T PRK11269 479 ---IRQAQRA-----FD----------MDYCVQLA--FENINSPELNGYGVDHVKVAEGLGCKAI-RV--FKPEDIAPAL 535 (591)
T ss_pred ---HHHHHHH-----hc----------cCccceee--ccccccccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 1111000 00 00000000 0000000000012477899999999988 55 5999999999
Q ss_pred HHHHhc--CCCCcEEEEEEeec
Q 007443 349 QEVASL--GSMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~--~~~gP~lI~v~T~k 368 (603)
+++.+. ..+||+||++.+.+
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHhhcccCCCcEEEEEEecc
Confidence 998741 12799999999964
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.13 E-value=7.3e-10 Score=127.07 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=112.1
Q ss_pred cchHHHHHHHHhhccCCCce-eeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~-ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+...+++..|...+ |.|. ++.|.| |..|...++.- ++ | .......+.|++|.++++|+
T Consensus 398 l~~~~~~~~l~~~l--~~~~ivv~d~G~~~~~~~~~~~~--------~~-------p---~~~~~~~~~G~mG~glpaai 457 (612)
T PRK07789 398 LAPQYVIERLGEIA--GPDAIYVAGVGQHQMWAAQFIDY--------EK-------P---RTWLNSGGLGTMGYAVPAAM 457 (612)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEECCcHHHHHHHHhccc--------CC-------C---CeEEcCCCcccccchhhhHH
Confidence 55555655555544 4555 456887 44455544431 11 0 01112235689999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+|+ +...+|.+|.+++.|+++||-||+ |.+ .+..+++.
T Consensus 458 Ga~la----~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~---------------i~~~q~~~-- 514 (612)
T PRK07789 458 GAKVG----RPDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLGM---------------VRQWQTLF-- 514 (612)
T ss_pred hhhcc----CCCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchHH---------------HHHHHHHh--
Confidence 99998 4688999999999997 777899999999977666666655 432 00000000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhc-cCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG-MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
.+.... .. +.... .-.+++.+++++||+++. .| ++.++|.++|+++.+. .++|+
T Consensus 515 ----------------~~~~~~----~~-~~~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~a~~~-~~~p~ 569 (612)
T PRK07789 515 ----------------YEERYS----NT-DLHTHSHRIPDFVKLAEAYGCVGL-RC--EREEDVDAVIEKARAI-NDRPV 569 (612)
T ss_pred ----------------hCCCcc----ee-ecCcCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhc-CCCcE
Confidence 000000 00 00000 002467899999999998 56 4899999999999873 27899
Q ss_pred EEEEEeec
Q 007443 361 LVHVVTEE 368 (603)
Q Consensus 361 lI~v~T~k 368 (603)
||++.+.+
T Consensus 570 lIev~i~~ 577 (612)
T PRK07789 570 VIDFVVGK 577 (612)
T ss_pred EEEEEECC
Confidence 99999964
No 123
>PRK08617 acetolactate synthase; Reviewed
Probab=99.13 E-value=1.8e-09 Score=122.40 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=91.8
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|+||.++++|+|.++| .++++|||++|||+++ |...+|.+|..++.|+++||.||+ |.+
T Consensus 412 ~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~------------ 473 (552)
T PRK08617 412 GMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNM------------ 473 (552)
T ss_pred ccccccccccHHHhhHhh----cCCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccch------------
Confidence 457899999999999998 4688999999999997 777899999999988775555555 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+ .. .+ ...| ++.. . -.+-.+++..++++||.++. .| ++.++|.++|
T Consensus 474 --~-~~---~~-~~~~--------------~~~~-----~-----~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al 519 (552)
T PRK08617 474 --V-EF---QE-EMKY--------------GRSS-----G-----VDFGPVDFVKYAESFGAKGL-RV--TSPDELEPVL 519 (552)
T ss_pred --H-HH---HH-Hhhc--------------CCcc-----c-----CCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 0 00 00 0000 0000 0 00113467899999999998 44 4899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++.+. ++|++|++.+.+..
T Consensus 520 ~~a~~~--~~p~liev~~~~~~ 539 (552)
T PRK08617 520 REALAT--DGPVVIDIPVDYSD 539 (552)
T ss_pred HHHHhC--CCcEEEEEEecccc
Confidence 999876 89999999996543
No 124
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.13 E-value=1.4e-09 Score=123.69 Aligned_cols=129 Identities=21% Similarity=0.250 Sum_probs=92.5
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|+++| .++++|||++|||+++ +..++|.+|.+++.|+++||.||+ +.+
T Consensus 419 ~~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~~------------ 480 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFA----HPEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLGM------------ 480 (574)
T ss_pred CcccccchhHHHHHHHhh----cCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhHH------------
Confidence 468899999999999998 3678999999999997 667899999999988877777776 321
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+ ++.| ... .+... ..... .-.+++..+.++||++++ .|+ +.++|..+|
T Consensus 481 --i----~~~q------------~~~---~~~~~------~~~~~--~~~~d~~~la~a~G~~~~-~v~--~~~eL~~al 528 (574)
T PRK06882 481 --V----KQWQ------------DLI---YSGRH------SQVYM--NSLPDFAKLAEAYGHVGI-QID--TPDELEEKL 528 (574)
T ss_pred --H----HHHH------------HHh---cCCcc------cccCC--CCCCCHHHHHHHCCCeEE-EeC--CHHHHHHHH
Confidence 0 0000 000 00000 00000 012467889999999998 665 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeecC
Q 007443 349 QEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG 369 (603)
+++.+. .++|+||++.+.+.
T Consensus 529 ~~a~~~-~~~p~liev~i~~~ 548 (574)
T PRK06882 529 TQAFSI-KDKLVFVDVNVDET 548 (574)
T ss_pred HHHHhc-CCCcEEEEEEecCc
Confidence 998764 26899999999653
No 125
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.13 E-value=1.6e-09 Score=123.35 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=91.8
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ +...+|.+|..++.|+++||.||+ |.+.
T Consensus 422 ~~g~mG~glpaAiGaala----~p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~~~i----------- 484 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLA----KPDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEALGMV----------- 484 (571)
T ss_pred CcccccchHHHHHHHHHh----CCCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchHHHH-----------
Confidence 458899999999999998 4688999999999998 666789999999977665555554 5431
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
|...+.. ++.... ...+ -.+++.++.++||+++. .|+ +.++|.++
T Consensus 485 -------------------~~~~~~~---~~~~~~---------~~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~a 530 (571)
T PRK07710 485 -------------------RQWQEEF---YNQRYS---------HSLLSCQPDFVKLAEAYGIKGV-RID--DELEAKEQ 530 (571)
T ss_pred -------------------HHHHHHH---hCCcce---------eccCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHH
Confidence 0000000 000000 0001 12467889999999998 564 79999999
Q ss_pred HHHHHhcCCCCcEEEEEEeecCC
Q 007443 348 LQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
++++.+. ++|++|++.|....
T Consensus 531 l~~a~~~--~~p~lieV~vd~~~ 551 (571)
T PRK07710 531 LQHAIEL--QEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHhC--CCCEEEEEEecCcc
Confidence 9999876 89999999997533
No 126
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.12 E-value=1.2e-09 Score=124.67 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=113.3
Q ss_pred cchHHHHHHHHhhccCCCceee-ecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii-~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~ 202 (603)
+...+++..|...+ |+|.+| .|.| |+.|.+.++.- .+ | .+.+...+.|++|.++++|+
T Consensus 386 i~~~~~~~~l~~~l--~~d~ivv~d~G~~~~~~~~~~~~--------~~-------p---~~~~~~~~~g~mG~glp~ai 445 (588)
T PRK07525 386 MHPRQALREIQKAL--PEDAIVSTDIGNNCSIANSYLRF--------EK-------G---RKYLAPGSFGNCGYAFPAII 445 (588)
T ss_pred cCHHHHHHHHHHhC--CCCcEEEECCcccHHHHHHhccc--------CC-------C---CeEEccccccccccHHHHHH
Confidence 45555555565555 556554 5888 56677654431 00 0 01111234688999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 203 G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
|.++| .++++|||++|||+++ +...+|.+|..++.|+++||-|| +|.+. + +.+.
T Consensus 446 Ga~la----~p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y~~~---------------~---~~~~- 500 (588)
T PRK07525 446 GAKIA----CPDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQWGAE---------------K---KNQV- 500 (588)
T ss_pred HHHHh----CCCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchhHHH---------------H---HHHH-
Confidence 99998 4688999999999998 55678999999998877666555 45420 0 0000
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC--CCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC-CCC
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMG 358 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~-~~g 358 (603)
..| +... ..-.+ .+++..+.++||.++. .|+ +.++|.++++++.+.. .++
T Consensus 501 ~~~--------------~~~~----------~~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~~~~~~ 553 (588)
T PRK07525 501 DFY--------------NNRF----------VGTELDNNVSYAGIAEAMGAEGV-VVD--TQEELGPALKRAIDAQNEGK 553 (588)
T ss_pred HHh--------------CCCc----------ccccCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhcCCCCC
Confidence 000 0000 00001 1367889999999998 665 8999999999987641 258
Q ss_pred cEEEEEEeecCCC
Q 007443 359 PVLVHVVTEENRR 371 (603)
Q Consensus 359 P~lI~v~T~kG~G 371 (603)
|+||++.+.+..|
T Consensus 554 p~lIev~~~~~~~ 566 (588)
T PRK07525 554 TTVIEIMCNQELG 566 (588)
T ss_pred cEEEEEEeccccC
Confidence 9999999975443
No 127
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.12 E-value=7.6e-10 Score=125.53 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=92.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccch
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg 269 (603)
+.|++|.++++|+|+++| .++++|||++|||+++ +...+|.+|.+++.|+++||.||+...
T Consensus 410 ~~g~mG~~l~aaiGa~la----~~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVA----KPESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhh----CCCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 458899999999999988 4678999999999998 555689999999988888888887321
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC-CCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI-GPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+ ...++.+ .+... . ..... .+++..++++||++++ .|+ +.++|.+++
T Consensus 471 ~~-~~~q~~~------------------~~~~~-------~--~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 519 (558)
T TIGR00118 471 MV-RQWQELF------------------YEERY-------S--HTHMGSLPDFVKLAEAYGIKGI-RIE--KPEELDEKL 519 (558)
T ss_pred HH-HHHHHHh------------------cCCce-------e--eccCCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 00 0000000 00000 0 00011 2467899999999998 665 689999999
Q ss_pred HHHHhcCCCCcEEEEEEeecC
Q 007443 349 QEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG 369 (603)
+++.+. ++|+|||+.+.+.
T Consensus 520 ~~a~~~--~~p~liev~~~~~ 538 (558)
T TIGR00118 520 KEALSS--NEPVLLDVVVDKP 538 (558)
T ss_pred HHHHhC--CCCEEEEEEeCCc
Confidence 999876 8999999999753
No 128
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.08 E-value=8.8e-10 Score=125.26 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=88.3
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|.++| .++++|||++|||+++ |....|.+|.+++.|+++||-|| +|.+.
T Consensus 416 ~~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i----------- 478 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLGMV----------- 478 (566)
T ss_pred ccccccchhhHhheehee----cCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCchHH-----------
Confidence 458999999999999998 4788999999999997 77788999999997765555555 45431
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+..++. + .++.. . ...+ -.+++..+.|+||.++. .|+ +.++|.++
T Consensus 479 ----~~~q~~---------------~---~~~~~------~---~~~~~~~~d~~~lA~a~G~~~~-~v~--~~~el~~a 524 (566)
T PRK07282 479 ----RQWQES---------------F---YEGRT------S---ESVFDTLPDFQLMAQAYGIKHY-KFD--NPETLAQD 524 (566)
T ss_pred ----HHHHHH---------------H---hCCCc------c---cccCCCCCCHHHHHHHCCCEEE-EEC--CHHHHHHH
Confidence 000000 0 00000 0 0001 13477899999999998 554 89999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
++.+ .. ++|+||++.+.+
T Consensus 525 l~~~-~~--~~p~lIeV~v~~ 542 (566)
T PRK07282 525 LEVI-TE--DVPMLIEVDISR 542 (566)
T ss_pred HHHh-cC--CCCEEEEEEeCC
Confidence 9754 33 799999999964
No 129
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.07 E-value=1.7e-09 Score=123.39 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=91.1
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|+++| .++++|||++|||+++ +...+|.+|.+++.|+++||-||+ |.+
T Consensus 417 ~~gsmG~~lpaaiGa~la----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~------------ 478 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVA----KPDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLGM------------ 478 (586)
T ss_pred CccccccchhHHHhhhhh----cCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHH------------
Confidence 458899999999999998 4678899999999998 666789999999988777776665 432
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
....++.. .+.... .. .+ -..++..++++||+++. .| ++.++|.++
T Consensus 479 ---~~~~~~~~------------------~~~~~~--------~~-~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~a 525 (586)
T PRK06276 479 ---VYQWQNLY------------------YGKRQS--------EV-HLGETPDFVKLAESYGVKAD-RV--EKPDEIKEA 525 (586)
T ss_pred ---HHHHHHHH------------------hCCCcc--------cc-cCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHH
Confidence 00000000 000000 00 00 12467889999999988 55 489999999
Q ss_pred HHHHHhcCCCCcEEEEEEeec
Q 007443 348 LQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~k 368 (603)
|+++.+. ++|+||++.+.+
T Consensus 526 l~~a~~~--~~p~lIeV~i~~ 544 (586)
T PRK06276 526 LKEAIKS--GEPYLLDIIIDP 544 (586)
T ss_pred HHHHHhC--CCCEEEEEEecc
Confidence 9999875 899999999964
No 130
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.05 E-value=8.4e-10 Score=114.17 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=93.1
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCcc-CCCcccch
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIE-ESPKTSIN 269 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~-~g~s~~vg 269 (603)
|.+|.++++|+|+++| +++++|||++|||++. .+..+.|.+|.+++.|+++||-||+ |.. |.- ..++++.|
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~--t~~Q~s~~t~~g 132 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGL--TKGQASPTTLKG 132 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhh--hcceecCCCCCC
Confidence 4489999999999888 5789999999999975 1224789999999999888888887 332 100 00011111
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
.-.+ ....|. .....|+.++++++|..++.+.+-.+++++.++++
T Consensus 133 ~~~~---------------------~~p~g~--------------~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~ 177 (280)
T PRK11869 133 FKTP---------------------TQPWGV--------------FEEPFNPIALAIALDASFVARTFSGDIEETKEILK 177 (280)
T ss_pred cccc---------------------cCCCCc--------------cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHH
Confidence 0000 000000 00023668899999999997666779999999999
Q ss_pred HHHhcCCCCcEEEEEEeec
Q 007443 350 EVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 350 ~a~~~~~~gP~lI~v~T~k 368 (603)
+|.+. +||++|++.+.-
T Consensus 178 ~Al~~--~Gp~lIeV~~pC 194 (280)
T PRK11869 178 EAIKH--KGLAIVDIFQPC 194 (280)
T ss_pred HHHhC--CCCEEEEEECCC
Confidence 99987 899999999863
No 131
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.04 E-value=1.1e-09 Score=113.48 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=94.2
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCC-ccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCccc--
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTS-- 267 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~-- 267 (603)
.|.+|.++++|+|+++| .++.+||+++||| ++.-| ...|.+|.+++.|+++||-||+.- +|+|.+..
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~y----gmtggQ~s~~ 127 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVY----GLTTGQASPT 127 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhh----hhhcccccCC
Confidence 46679999999999999 5788999999999 57644 578999999999999888888742 22222211
Q ss_pred --chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHH
Q 007443 268 --INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (603)
Q Consensus 268 --vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~ 345 (603)
.|.-. . ....|.. + -..++..+++++|..++...+..+++++.
T Consensus 128 t~~g~~t------~---------------~t~~g~~--------~------~~~d~~~iA~a~G~~~Va~~~~~~~~~l~ 172 (279)
T PRK11866 128 TPRGVKT------K---------------TTPDGNI--------E------EPFNPIALALAAGATFVARGFSGDVKHLK 172 (279)
T ss_pred CCCCcee------e---------------ccCCCCC--------C------CCCCHHHHHHHCCCCEEEEEcCCCHHHHH
Confidence 11100 0 0000100 0 00155788999999988777778999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEee
Q 007443 346 SVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 346 ~al~~a~~~~~~gP~lI~v~T~ 367 (603)
++++++.+. +||++|++...
T Consensus 173 ~~l~~Al~~--~Gps~I~v~~p 192 (279)
T PRK11866 173 EIIKEAIKH--KGFSFIDVLSP 192 (279)
T ss_pred HHHHHHHhC--CCCEEEEEeCC
Confidence 999999987 89999999875
No 132
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.03 E-value=3e-09 Score=111.44 Aligned_cols=197 Identities=17% Similarity=0.254 Sum_probs=113.5
Q ss_pred CCCcccCccchHHHHHHHHhhccC-CCcee-eecCCchH---HHHHHHhcc-----------hhHhhH-hhhc---CCCC
Q 007443 117 TEKSLKSSLAAVELTVALHHVFHA-PVDKI-LWDVGEQT---YAHKILTGR-----------RSLIHT-LRKK---DGIS 176 (603)
Q Consensus 117 ~gGHlgsslg~~el~~aL~~vf~~-p~D~i-i~d~GH~a---Y~~~~LtGr-----------~~~~~~-~R~~---ggl~ 176 (603)
--||.|.+-|..=+.+-|.++-+. ..|.+ |.-.||.+ .+..+|.|. .+.|.. +||+ ||+.
T Consensus 46 llGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGip 125 (379)
T PF09364_consen 46 LLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIP 125 (379)
T ss_dssp --S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-
T ss_pred cccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCc
Confidence 349999998887777667665432 34444 45788987 566778774 234444 3554 6788
Q ss_pred CCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhh----hcC----CCEEEE
Q 007443 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG----YLD----SNMIVI 248 (603)
Q Consensus 177 g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~----~~~----~nlivI 248 (603)
+|..+ +.++-...-|-+|.+++.|.|+++- ++|-.|+||+|||+..+|- +..+. +++ ..++=|
T Consensus 126 SH~~p-~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGp----lA~sWh~~kflnP~~dGaVLPI 196 (379)
T PF09364_consen 126 SHVSP-ETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGP----LAASWHSNKFLNPATDGAVLPI 196 (379)
T ss_dssp SSS-T-TSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHH----HHHHGGGGGSS-TTTS-EEEEE
T ss_pred cccCc-CCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCc----ccccccccceeCcccCceeece
Confidence 88775 4565556778899999999998875 7899999999999998874 22222 112 458999
Q ss_pred EECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhc
Q 007443 249 LNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEEL 328 (603)
Q Consensus 249 lndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~ 328 (603)
+.-|++-|. .++ .|.++ + -++ ...+|+.+
T Consensus 197 LhLNG~KI~--------~pT-----il~r~--------------------~---------~~e---------L~~lf~G~ 225 (379)
T PF09364_consen 197 LHLNGYKIS--------NPT-----ILARM--------------------S---------DEE---------LEALFRGY 225 (379)
T ss_dssp EEE-SBSSS--------SB------HHHHS------------------------------HHH---------HHHHHHHT
T ss_pred EEecCcccc--------CCe-----Eeeec--------------------C---------HHH---------HHHHHHhC
Confidence 999999883 121 11111 0 000 14679999
Q ss_pred CCeEEeecCCCCHHHHHHHHHH--------HHhc-----C---CCCc--EEEEEEeecCCCCCc
Q 007443 329 GLYYIGPVDGHNIEDLISVLQE--------VASL-----G---SMGP--VLVHVVTEENRRAED 374 (603)
Q Consensus 329 G~~~ig~vDGhD~~~l~~al~~--------a~~~-----~---~~gP--~lI~v~T~kG~G~~~ 374 (603)
||..+ .|+|.|++++...+.. +++. . ..+| -+|+++|.||++.+.
T Consensus 226 Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 226 GYEPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp TEEEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-S
T ss_pred CCeEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCcc
Confidence 99999 8999998877654322 2221 0 1233 478899999998764
No 133
>PLN02573 pyruvate decarboxylase
Probab=99.02 E-value=2.1e-09 Score=122.42 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=88.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|+||.++++|+|.++| .++++|||++|||+|+ |...+|.+|.+++.|+++||.||+ |.+. .
T Consensus 426 ~~gsmG~glpaaiGa~lA----~p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~--------~-- 489 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQA----APDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIE--------V-- 489 (578)
T ss_pred chhhhhhhhhHHHHHHHh----CCCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEE--------E--
Confidence 468999999999999999 3678999999999997 888899999999977655555554 5431 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcC-----CeEEeecCCCCHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG-----LYYIGPVDGHNIED 343 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G-----~~~ig~vDGhD~~~ 343 (603)
. .+ ...|. ..-.+++..++++|| +++. +|+ +.++
T Consensus 490 -----~---~~-~~~~~-----------------------------~~~~~d~~~lA~a~G~~~g~~~~~-~V~--~~~e 528 (578)
T PLN02573 490 -----E---IH-DGPYN-----------------------------VIKNWNYTGLVDAIHNGEGKCWTA-KVR--TEEE 528 (578)
T ss_pred -----e---ec-ccCcc-----------------------------ccCCCCHHHHHHHhcCcCCceeEE-Eec--CHHH
Confidence 0 00 00000 001235678899985 7777 666 7999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEee
Q 007443 344 LISVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 344 l~~al~~a~~~~~~gP~lI~v~T~ 367 (603)
|.++++++.+...++|+||++.+.
T Consensus 529 L~~al~~a~~~~~~~p~lieV~v~ 552 (578)
T PLN02573 529 LIEAIATATGEKKDCLCFIEVIVH 552 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEEcC
Confidence 999999997411288999999984
No 134
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.02 E-value=4.2e-09 Score=119.80 Aligned_cols=134 Identities=15% Similarity=0.175 Sum_probs=90.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|+++| .++++|||++|||+++-+..-+++++|..++.|+++||.||+ |.+..
T Consensus 428 ~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~---------- 493 (569)
T PRK08327 428 SAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVK---------- 493 (569)
T ss_pred CCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccch----------
Confidence 468999999999999988 578999999999999865544579999999988877777774 54310
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHh-hhcc-CCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY-ARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
...+.. |. .+.+.. .... ...+ -..++..++++||+++. .|+ +.++|.+
T Consensus 494 -----~~~~~~----~~----------~~~~~~-------~~~~~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~ 544 (569)
T PRK08327 494 -----EAVLEV----YP----------EGYAAR-------KGTFPGTDFDPRPDFAKIAEAFGGYGE-RVE--DPEELKG 544 (569)
T ss_pred -----hHHhhh----Cc----------cccccc-------ccccccccCCCCCCHHHHHHhCCCCce-EeC--CHHHHHH
Confidence 000000 00 000000 0000 0000 12367889999999988 665 9999999
Q ss_pred HHHHHHhc--CCCCcEEEEEEe
Q 007443 347 VLQEVASL--GSMGPVLVHVVT 366 (603)
Q Consensus 347 al~~a~~~--~~~gP~lI~v~T 366 (603)
+++++.+. ..+||++||+.+
T Consensus 545 al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEc
Confidence 99988653 125799999986
No 135
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.01 E-value=2e-09 Score=112.56 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=91.3
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcc----
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKT---- 266 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~---- 266 (603)
|.+|.++++|+|+++| .++.+|||+.|||++. ++....|.+|.+++.|+++||-||+ |.. ++.+.
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~-----t~gQ~s~t~ 139 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL-----TKGQASPTT 139 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc-----ccCcccCCc
Confidence 6789999999999998 5788999999999972 2334679999999988888888887 332 11110
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 267 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
+.|... .....|. ..-..++..+++++|+.++......+.++|.+
T Consensus 140 ~~g~~~---------------------~~~~~g~--------------~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ 184 (301)
T PRK05778 140 PEGSKT---------------------KTAPYGN--------------IEPPIDPCALALAAGATFVARSFAGDVKQLVE 184 (301)
T ss_pred CCCccc---------------------ccccCCC--------------cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHH
Confidence 000000 0000000 00123668899999999875556679999999
Q ss_pred HHHHHHhcCCCCcEEEEEEee
Q 007443 347 VLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~ 367 (603)
+++++.+. +||+||++.+.
T Consensus 185 ai~~A~~~--~GpalIeV~~~ 203 (301)
T PRK05778 185 LIKKAISH--KGFAFIDVLSP 203 (301)
T ss_pred HHHHHHhC--CCCEEEEEcCC
Confidence 99999876 89999999875
No 136
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.96 E-value=1.6e-08 Score=114.95 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=87.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|.++| ++++|||++|||+++ +...+|.+|.+++.|+++||-||+ |.+..
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~---------- 485 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFS---------- 485 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCcccc----------
Confidence 346799999999999987 377899999999998 444678899999977666555555 54310
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+ ...+... |. ..+....-..++.++.++||+++. .| ++.++|.+++
T Consensus 486 -~~----~~~~~~~-~~------------------------~~~~~~~~~~df~~lA~a~G~~~~-~V--~~~~eL~~al 532 (568)
T PRK07449 486 -LL----PQPEEEP-VF------------------------ERFFGTPHGVDFAHAAAMYGLEYH-RP--ETWAELEEAL 532 (568)
T ss_pred -CC----CCCCCcc-hh------------------------hHhhcCCCCCCHHHHHHHcCCCcc-CC--CCHHHHHHHH
Confidence 00 0000000 00 000000012467899999999988 55 4899999999
Q ss_pred HHHHhcCCCCcEEEEEEee
Q 007443 349 QEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~ 367 (603)
+++.+. ++|++|++.+.
T Consensus 533 ~~a~~~--~~p~lIev~id 549 (568)
T PRK07449 533 ADALPT--PGLTVIEVKTN 549 (568)
T ss_pred HHHhcC--CCCEEEEEeCC
Confidence 999875 89999999984
No 137
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.94 E-value=4.9e-09 Score=108.52 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=89.2
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCccc---
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTS--- 267 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~--- 267 (603)
+++|.++++|+|+++| .++++|||+.|||++.. +.-..+.+|.+++.|+++||-||+ +.. .+.+..
T Consensus 68 ~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-----t~~Q~~~~t 137 (277)
T PRK09628 68 TTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-----TNSQTSPTT 137 (277)
T ss_pred eccccHHHHHHHHHHH----CCCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-----ceecccCCC
Confidence 4678999999999999 57899999999999752 233457778999989888877776 332 111110
Q ss_pred -chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 268 -INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 268 -vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
.|... .....+. ..-..++..+.+++|+.++....-.++++|.+
T Consensus 138 ~~g~~~---------------------~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~ 182 (277)
T PRK09628 138 PKGMWT---------------------VTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEK 182 (277)
T ss_pred CCCcee---------------------eeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHH
Confidence 00000 0000000 00012458889999999863334469999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCC
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++++.+. +||+||++.+.---
T Consensus 183 al~~Al~~--~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 183 LLVKGFSH--KGFSFFDVFSNCHI 204 (277)
T ss_pred HHHHHHhC--CCCEEEEEcCCCCC
Confidence 99999886 89999999986433
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.92 E-value=6.4e-09 Score=108.25 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=90.6
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCc-cccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcc---
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT-TMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKT--- 266 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~--- 266 (603)
|.+|.++++|+|+++| .++.+|||++|||+ ++ +....|.+|.+++.|+++||-||+ |.. ++.+.
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGm-----t~~q~s~t 137 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGL-----TKGQYSPT 137 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhh-----hcCccCCC
Confidence 7789999999999998 57899999999996 76 444679999999988877777776 432 11110
Q ss_pred -cchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHH
Q 007443 267 -SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (603)
Q Consensus 267 -~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~ 345 (603)
+.|.-. .....|. .+ -..++..+.+++|..++.+..-.+++++.
T Consensus 138 t~~g~~~---------------------~~~~~g~--------~~------~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 138 SPVGFVT---------------------KTTPYGS--------IE------PPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CCCCccc---------------------ccccCCC--------CC------CCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 000000 0000000 00 01245678899999888555666899999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeecCC
Q 007443 346 SVLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 346 ~al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
++|+++.+. +||+||++.+.-=.
T Consensus 183 ~al~~Al~~--~Gp~lIev~~~C~~ 205 (286)
T PRK11867 183 ELIKAAINH--KGFSFVEILQPCPT 205 (286)
T ss_pred HHHHHHHhC--CCCEEEEEeCCCCC
Confidence 999999886 89999999976433
No 139
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.84 E-value=1.2e-08 Score=116.78 Aligned_cols=126 Identities=20% Similarity=0.289 Sum_probs=91.2
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
.|.+|.++++|+|.++| .++++||+++|||++. .| ..+|.+|.+++.|+++||-||+ +.+ .+.+...
T Consensus 402 ~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~-----~~~q~~~ 470 (595)
T TIGR03336 402 TLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAM-----TGHQPNP 470 (595)
T ss_pred eeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceec-----cCCCCCC
Confidence 58899999999999988 5788999999999997 23 4688899999988877777776 432 2211110
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+.- + ...+. ..-..++..+.+++|+++....+-.|++++.+++
T Consensus 471 ~~~------------~-----------~~~~~--------------~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al 513 (595)
T TIGR03336 471 GTG------------V-----------TGMGE--------------ATKEISIEELCRASGVEFVEVVDPLNVKETIEVF 513 (595)
T ss_pred CCC------------C-----------CCCCC--------------cCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHH
Confidence 000 0 00000 0012356788999999999666778999999999
Q ss_pred HHHHhcCCCCcEEEEEEe
Q 007443 349 QEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T 366 (603)
+++.+. +||++|+++.
T Consensus 514 ~~a~~~--~gp~li~v~~ 529 (595)
T TIGR03336 514 KAALAA--EGVSVIIAKQ 529 (595)
T ss_pred HHHHhc--CCCEEEEEcc
Confidence 999876 8999999965
No 140
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.2e-07 Score=102.77 Aligned_cols=380 Identities=13% Similarity=0.148 Sum_probs=228.3
Q ss_pred HHHHHHHHh-hcc----CCCceeeecCCchHHHHHHHhcc--hhHhhHhhhcCCCCCCCCCCCCCCC----------CcC
Q 007443 128 VELTVALHH-VFH----APVDKILWDVGEQTYAHKILTGR--RSLIHTLRKKDGISGYTSRSESEYD----------PFN 190 (603)
Q Consensus 128 ~el~~aL~~-vf~----~p~D~ii~d~GH~aY~~~~LtGr--~~~~~~~R~~ggl~g~~~~~es~~d----------~~~ 190 (603)
+|-+.|.++ .|. ..-..+|+...|..- ..+||+- -..-..||+..|.+-||+.-+...| .++
T Consensus 191 AESM~aFF~eLl~~sa~~~ie~viigmpHRGR-lnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg 269 (913)
T KOG0451|consen 191 AESMLAFFWELLRDSAQANIEHVIIGMPHRGR-LNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKG 269 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEeccccCc-chHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcc
Confidence 345555555 332 123455555556541 1233332 1223457888888888876442222 222
Q ss_pred cC------------chhhhHHHHHHHHHHHHHc---C---C------CCeEEE--EEcCCccc-cchHHHHHHHhh--hc
Q 007443 191 AG------------HGCNSVSAGLGMAVARDIK---G---K------RECIVT--VISNGTTM-AGQAYEAMSNAG--YL 241 (603)
Q Consensus 191 ~G------------~~G~~is~A~G~A~A~~l~---g---~------~~~Vv~--viGDGal~-eG~~~EAln~A~--~~ 241 (603)
.| |+-.--++|+|=+.++... | + ..+|++ +-||+++. +|++||.++.+- +.
T Consensus 270 ~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHF 349 (913)
T KOG0451|consen 270 LGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHF 349 (913)
T ss_pred cCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCce
Confidence 22 3333446788877775432 1 1 234554 56999988 899999999875 44
Q ss_pred C-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCC
Q 007443 242 D-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (603)
Q Consensus 242 ~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (603)
. .--+-++-||+...- | ++ .+|.-+.| -
T Consensus 350 rvGGsvHLivNNQvgfT-t----p~-~rGRSs~y--------------------------------------c------- 378 (913)
T KOG0451|consen 350 RVGGSVHLIVNNQVGFT-T----PG-DRGRSSAY--------------------------------------C------- 378 (913)
T ss_pred eecceEEEEeccccccc-C----cc-cccccchh--------------------------------------h-------
Confidence 4 455666777876641 1 11 12211100 0
Q ss_pred hhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccCC----c---------------
Q 007443 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQKS----E--------------- 379 (603)
Q Consensus 321 ~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~~----~--------------- 379 (603)
.++.++++..++ .|+|.|++++.++-+-|..+. -.+-++|.+...+-+|+.-.++. |
T Consensus 379 -sDiaK~~~~pvi-HVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 379 -SDIAKSIQAPVI-HVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDL 456 (913)
T ss_pred -hHHHHHhCCCEE-EeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhcccHH
Confidence 345677899999 899999999999866654431 26789999999999997432211 1
Q ss_pred ------hhh---------------hcc----cC-----CCC--------------------CC---------------CC
Q 007443 380 ------AIE---------------KQQ----EG-----ASD--------------------SN---------------SL 394 (603)
Q Consensus 380 ------~~g---------------~~~----~~-----~~~--------------------~~---------------~~ 394 (603)
..| +++ +. .|+ .+ ..
T Consensus 457 ya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~v 536 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTV 536 (913)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCchhhHHhhhhhccChhhhcccccCcchHHHHHhccCceec
Confidence 000 000 00 000 00 11
Q ss_pred CC---------------------CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchh--h-hhH-----hC----
Q 007443 395 PF---------------------GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ--L-FQE-----KF---- 441 (603)
Q Consensus 395 p~---------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~--~-f~~-----~f---- 441 (603)
|. ++.++.|..|=+-++-.++....+|-+-++|++.++--. . +.. -|
T Consensus 537 Pedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN 616 (913)
T KOG0451|consen 537 PEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLN 616 (913)
T ss_pred chhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeecc
Confidence 10 133466777777778889999999999999999764210 0 000 01
Q ss_pred ---CC-----CeeecchhhHHHHHHHHHHhcCC--CeEEEEe-cHHhHHHH---HHHHHHHh-hc--CCCCeEEEEeCCC
Q 007443 442 ---PE-----RYFDVGMAEQHAVTFSAGLACGG--LKPFCII-PSAFLQRA---YDQVVNDV-DQ--QRLPVRFVITSAG 504 (603)
Q Consensus 442 ---p~-----R~id~GIaE~~~vg~AaGlA~~G--~~P~~~~-~~~Fl~ra---~dQi~~~~-a~--~~lpV~~~~~~~G 504 (603)
++ -+-|..++|.++.|+--||+.+. ..++++. |.+|..-| +|-..... ++ ...-++++.+| |
T Consensus 617 ~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-G 695 (913)
T KOG0451|consen 617 SMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPH-G 695 (913)
T ss_pred ccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccC-C
Confidence 11 24578999999999999999985 5788888 99997433 33322210 11 33456677777 7
Q ss_pred CCCCCCCCCCChhhHHHHh-----------cCCCcEEEecCCHHHHHHHHHHHHh-CCCCcEEEEeecCCC
Q 007443 505 LVGSDGPTQCGAFDITFMS-----------CLPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAI 563 (603)
Q Consensus 505 ~~g~dG~tH~~~~dia~lr-----------~iPnl~V~~Psd~~e~~~~l~~a~~-~~~~P~~ir~~r~~~ 563 (603)
+.| -|+-|+.+----+|. .--||.|+-|.++.+...+|+.-+. +-.+|.++.-||-+.
T Consensus 696 yDG-AgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LL 765 (913)
T KOG0451|consen 696 YDG-AGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLL 765 (913)
T ss_pred cCC-CCCccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHh
Confidence 755 588898653223322 1238999999999999999987654 456799888877554
No 141
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.82 E-value=6.4e-09 Score=115.39 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=98.2
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccch
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg 269 (603)
+=.+|.||+.|-|++.+. .+++|++||||++. .|+ .++.+|.+.+.|++++|-||.. |||+|.++..|
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~----tAMTGgQp~pg 495 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRT----TAMTGGQPHPG 495 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccc----hhccCCCCCCC
Confidence 334788888888888763 38899999999976 776 5899999999999999999997 58888888776
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHH
Q 007443 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (603)
Q Consensus 270 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~ 349 (603)
...+. .|... ..-. .+++.+++|+.++.++|-+|++++.++++
T Consensus 496 ~~~~~-----------------------~g~~~--~~i~------------iee~~r~~Gv~~v~~vdp~~~~~~~~~~k 538 (640)
T COG4231 496 TGVAA-----------------------EGTKS--TAIV------------IEEVVRAMGVEDVETVDPYDVKELSEAIK 538 (640)
T ss_pred ccccc-----------------------CCCcc--ceeE------------hhHhhhhcCceeeeccCCcchHHHHHHHH
Confidence 32100 01000 0001 14567889999998999999999999999
Q ss_pred HHHhcCCCCcEEEEEEee
Q 007443 350 EVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 350 ~a~~~~~~gP~lI~v~T~ 367 (603)
++++. .||.+|+++-.
T Consensus 539 eale~--~gpsViiak~~ 554 (640)
T COG4231 539 EALEV--PGPSVIIAKRE 554 (640)
T ss_pred HHhcC--CCceEEEEcCc
Confidence 99998 78999998753
No 142
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.81 E-value=2.2e-08 Score=104.08 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=83.6
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcc-c---
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKT-S--- 267 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~-~--- 267 (603)
+.+|.++++|+|+++| .++.+|||++|||++. ++....|.+|.+++.|+++||-||+.- +|++.+. +
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~y----Gmt~gQ~sp~t~ 123 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVY----GLTKGQASPTLL 123 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHH----HhhhcccccCcc
Confidence 3469999999999998 5789999999999963 344578999999999988888888732 1111111 0
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
.|.- .. +...|. . ...+.+++..+++++|+... ....+++++.++
T Consensus 124 ~G~~------~~---------------~~~~g~-~-----------~~~~np~~~a~A~g~g~va~--~~~~~~~eL~~a 168 (287)
T TIGR02177 124 KGVK------TK---------------SLPYPN-I-----------QDPVNPLLLAIALGYTFVAR--GFSGDVAHLKEI 168 (287)
T ss_pred CCcc------ee---------------ecccCc-c-----------CCCCCHHHHHHhCCCCeEEE--EecCCHHHHHHH
Confidence 1100 00 000000 0 00011222344555555444 333699999999
Q ss_pred HHHHHhcCCCCcEEEEEEee
Q 007443 348 LQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 348 l~~a~~~~~~gP~lI~v~T~ 367 (603)
+++|.+. +||+||++.+.
T Consensus 169 i~~Al~~--~GpslIeV~~p 186 (287)
T TIGR02177 169 IKEAINH--KGYALVDILQP 186 (287)
T ss_pred HHHHHhC--CCCEEEEEeCC
Confidence 9999886 89999999875
No 143
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.80 E-value=1.7e-08 Score=114.06 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=87.0
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC-CCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS-RHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN-~~si~~t~~~g~s~~v 268 (603)
..|++|.++++|+|.++|. ++++|+++|||+++ |...+|.+|.+++.|+++||.|| +|.+..
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~---------- 463 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR---------- 463 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceee----------
Confidence 3589999999999999983 34568899999997 88899999999997755555555 554310
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+++. ..+ ..+-.+++.++.++||.+.. .|+ +.++|.+++
T Consensus 464 -----~~~~~-------------------------------~~~-~~~~~~d~~~lA~a~G~~~~-~v~--~~~eL~~al 503 (535)
T TIGR03394 464 -----VFQPE-------------------------------SAF-NDLDDWRFADMAAGMGGDGV-RVR--TRAELAAAL 503 (535)
T ss_pred -----hhccC-------------------------------CCc-ccCCCCCHHHHHHHcCCCce-EeC--CHHHHHHHH
Confidence 00000 000 00113467889999999988 555 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeec
Q 007443 349 QEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~k 368 (603)
+++.+. .++|++|++.+.+
T Consensus 504 ~~a~~~-~~~p~lIev~i~~ 522 (535)
T TIGR03394 504 DKAFAT-RGRFQLIEAMLPR 522 (535)
T ss_pred HHHHhc-CCCeEEEEEECCc
Confidence 998764 2458999999853
No 144
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.72 E-value=3.9e-08 Score=107.01 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=109.5
Q ss_pred cchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (603)
|-+..+.-.+-. |-.|.|.++.+.|-..|...-. -+|+...-. -..=-||.|.++++|+|.
T Consensus 363 Ltq~~~w~~~~~-fl~p~dviiaetGtS~FG~~~~-----------------~lP~~~~~i-~Q~lWGSIG~t~pAalGa 423 (557)
T COG3961 363 LTQEWLWNTVQN-FLKPGDVIIAETGTSFFGALDI-----------------RLPKGATFI-SQPLWGSIGYTLPAALGA 423 (557)
T ss_pred ccHHHHHHHHHh-hCCCCCEEEEccccccccceee-----------------ecCCCCeEE-cccchhhcccccHhhhhh
Confidence 444444333322 3378999999999765433100 123321100 011248899999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhh
Q 007443 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (603)
Q Consensus 205 A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~ 283 (603)
++| .+++++|.++|||+++ +.-+++....+++ .|+||++||++|.|.- +..|+. ..
T Consensus 424 ~~A----~~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr-~IHg~~----------------~~ 480 (557)
T COG3961 424 ALA----APDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIER-AIHGPT----------------AP 480 (557)
T ss_pred hhc----CCCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEe-hhcCCC----------------cC
Confidence 999 5789999999999998 7888899999888 8899999999998731 111111 22
Q ss_pred HHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEE-eecCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 007443 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYI-GPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (603)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~i-g~vDGhD~~~l~~al~~a~~~~~~gP~lI 362 (603)
|.++..| +...++++||-.-. ..-.-..-+++..+++.+.+. .+++++|
T Consensus 481 YNdI~~W-----------------------------d~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~lI 530 (557)
T COG3961 481 YNDIQSW-----------------------------DYTALPEAFGAKNGEAKFRATTGEELALALDVAFAN-NDRIRLI 530 (557)
T ss_pred ccccccc-----------------------------chhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcC-CCceEEE
Confidence 3322111 12356777774311 012334566777777777665 3789999
Q ss_pred EEEeec
Q 007443 363 HVVTEE 368 (603)
Q Consensus 363 ~v~T~k 368 (603)
||...+
T Consensus 531 Ev~lp~ 536 (557)
T COG3961 531 EVMLPV 536 (557)
T ss_pred EEecCc
Confidence 999743
No 145
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.68 E-value=2.3e-07 Score=98.38 Aligned_cols=177 Identities=15% Similarity=0.224 Sum_probs=120.3
Q ss_pred cCccchHHHHHHHHhhccCCCceeeecCC---chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhH
Q 007443 122 KSSLAAVELTVALHHVFHAPVDKILWDVG---EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198 (603)
Q Consensus 122 gsslg~~el~~aL~~vf~~p~D~ii~d~G---H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~i 198 (603)
|...---+.+-.|..+-+.-.|+.|.++| ||.|+.. |.++++-. +..-.-+.|.||.|+
T Consensus 469 Ge~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAq--------fy~w~kP~----------~~~tSGGLGtMGfGL 530 (675)
T KOG4166|consen 469 GEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQ--------FYNWKKPR----------QWLTSGGLGTMGFGL 530 (675)
T ss_pred ccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHH--------HhcccCcc----------ceeecCCccccccCc
Confidence 33333334444455554444567776554 8888763 33333211 111123578899999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhh
Q 007443 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRI 278 (603)
Q Consensus 199 s~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~ 278 (603)
++|+|..+| +++..||-+-||+++. |....|..+...+.|+-+++.||+.+ +|.+.|+.+
T Consensus 531 PAAIGAsVA----~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq--------------GMVtQWq~l 590 (675)
T KOG4166|consen 531 PAAIGASVA----NPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ--------------GMVTQWQDL 590 (675)
T ss_pred chhhccccc----CcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh--------------hhHHHHHHH
Confidence 999999998 6899999999999997 77778999999999988888777753 234455544
Q ss_pred hhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCC
Q 007443 279 QSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMG 358 (603)
Q Consensus 279 ~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~g 358 (603)
+-...|.. +. -..|++-.+.+++|++.. +|. --++|.+.+++..+. +|
T Consensus 591 FYe~rysH--------Th-------------------Q~nPnf~klA~AmGikal-RV~--K~edL~~k~keflsT--kG 638 (675)
T KOG4166|consen 591 FYEARYSH--------TH-------------------QENPNFLKLAAAMGIKAL-RVT--KKEDLREKIKEFLST--KG 638 (675)
T ss_pred HHHhhhcc--------cc-------------------ccCccHHHHHHhcCCchh-eee--hHHHHHHHHHHHhCC--CC
Confidence 32222210 10 113566788999999988 554 678999999998886 89
Q ss_pred cEEEEEEeec
Q 007443 359 PVLVHVVTEE 368 (603)
Q Consensus 359 P~lI~v~T~k 368 (603)
|+++++...+
T Consensus 639 PvLleV~v~~ 648 (675)
T KOG4166|consen 639 PVLLEVIVPH 648 (675)
T ss_pred CeEEEEEccC
Confidence 9999998754
No 146
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.55 E-value=2.6e-07 Score=116.44 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred CcCchhh--hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhc--CCCEEEEEECCC-CCcCCCccCCC
Q 007443 190 NAGHGCN--SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL--DSNMIVILNDSR-HSLHPKIEESP 264 (603)
Q Consensus 190 ~~G~~G~--~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~--~~nlivIlndN~-~si~~t~~~g~ 264 (603)
+-|.+|. ++|.|+|.++|. +++|||++|||+++ +...+|.+|..+ +.|+++||-||+ +.+.
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~------- 822 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIF------- 822 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhh-------
Confidence 4588888 599999999883 77899999999997 777899999874 778766666665 3321
Q ss_pred cccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHH
Q 007443 265 KTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDL 344 (603)
Q Consensus 265 s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l 344 (603)
..+...+... + . ..+.+.-....+++..+.++||+++. .|+ +.++|
T Consensus 823 --------~~l~~~~~~~--~------------------~---~~~~~~~~~~~~df~~lA~a~G~~~~-rV~--~~~eL 868 (1655)
T PLN02980 823 --------SLLPIAKRTE--P------------------R---VLNQYFYTSHDISIENLCLAHGVRHL-HVG--TKSEL 868 (1655)
T ss_pred --------hcCccCCCCc--c------------------h---hHHHHhcCCCCCCHHHHHHHcCCcee-ecC--CHHHH
Confidence 0000000000 0 0 00000000013467899999999999 665 89999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeec
Q 007443 345 ISVLQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 345 ~~al~~a~~~~~~gP~lI~v~T~k 368 (603)
.++++++.+. ++|+||+|.|.+
T Consensus 869 ~~aL~~a~~~--~~p~lIEV~t~~ 890 (1655)
T PLN02980 869 EDALFTSQVE--QMDCVVEVESSI 890 (1655)
T ss_pred HHHHHHhhcc--CCCEEEEEecCh
Confidence 9999998875 899999999974
No 147
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.33 E-value=1.3e-05 Score=86.31 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=96.7
Q ss_pred CCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCC
Q 007443 186 YDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESP 264 (603)
Q Consensus 186 ~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~ 264 (603)
|.+++..-||.=|+-++|..+| .+++.|++++|||++. |..-.|..+..++.+++|++-||. +..
T Consensus 438 H~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGC-------- 503 (617)
T COG3962 438 HLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGC-------- 503 (617)
T ss_pred eeeecccccccccccccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcch--------
Confidence 3445666688888888887755 6789999999999987 777889999999999999999996 332
Q ss_pred cccchhhhhhhhhhhhh----hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCC
Q 007443 265 KTSINALSSTLSRIQSS----KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHN 340 (603)
Q Consensus 265 s~~vg~ls~~l~~~~~~----~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD 340 (603)
+ .+||.. ..+..+|.... + -..+.-|++...+++|.+.. .| ++
T Consensus 504 ------I----n~LQm~~Gg~sf~~~~r~~~~------------------e--~~~~~vDfA~~A~s~Ga~~~-kv--~~ 550 (617)
T COG3962 504 ------I----NRLQMATGGASFNNLLRDTDH------------------E--EEILQVDFAAHAESYGAKAY-KV--GT 550 (617)
T ss_pred ------h----hhhhhhcCcchhhhhhhhhcc------------------c--CCCCcccHHHHHhhcCceeE-ec--CC
Confidence 1 122221 11222222110 0 11233477888999999988 55 49
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEee
Q 007443 341 IEDLISVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 341 ~~~l~~al~~a~~~~~~gP~lI~v~T~ 367 (603)
+++|..+|+.+|+. .++++|+++|.
T Consensus 551 i~eL~aAL~~Ak~~--~~ttvi~I~t~ 575 (617)
T COG3962 551 IEELEAALADAKAS--DRTTVIVIDTD 575 (617)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEEecC
Confidence 99999999999997 89999999985
No 148
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.24 E-value=1.7e-06 Score=94.20 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=53.6
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSL 256 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si 256 (603)
--||.|.++++++|.++| .++++|+.++|||+++ +..+.+.++.+++ .+.+|++||++|.|
T Consensus 413 ~wgsIG~svga~lG~a~a----~~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTI 474 (561)
T KOG1184|consen 413 QWGSIGWSVGATLGYAQA----APEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTI 474 (561)
T ss_pred EEeeccccchhhhhhhhc----cCCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEE
Confidence 357899999999999999 5779999999999999 5567788999998 77899999999987
No 149
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.24 E-value=2.8e-06 Score=102.10 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=90.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
+.-+||.+++.++|++.+ .++++||++||||++. .|+ -|+.+|.+.+.|++++|-||.. |||+|.++..
T Consensus 479 ~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~----vAMTGgQ~~~ 548 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDA----VAMTGGQPVD 548 (1165)
T ss_pred eeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCc----ccccCCCCCC
Confidence 455688899999999886 3457899999999976 777 4899999999999999999997 5899999888
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeec--CCCCHHHH--
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV--DGHNIEDL-- 344 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~v--DGhD~~~l-- 344 (603)
|.++ .. .+ ...+++.|++.+..| |..+++..
T Consensus 549 g~~~----~~-----------------------------~i------------~~~~~a~GV~~v~vv~ddp~~~~~~~~ 583 (1165)
T PRK09193 549 GGLS----VP-----------------------------QI------------TRQLAAEGVKRIVVVTDEPEKYDGVAR 583 (1165)
T ss_pred CCcc----hh-----------------------------hH------------HHHHHhCCCCEEEEeCCChhhhhhccc
Confidence 7531 00 11 345678888887667 66666655
Q ss_pred ------------HHHHHHHH-hcCCCCcEEEEEEe
Q 007443 345 ------------ISVLQEVA-SLGSMGPVLVHVVT 366 (603)
Q Consensus 345 ------------~~al~~a~-~~~~~gP~lI~v~T 366 (603)
.++++++. +. +|+++|+.+-
T Consensus 584 ~~~~v~~~~R~~l~~vq~~lr~~--~GvsViI~~q 616 (1165)
T PRK09193 584 LAPGVTVHHRDELDAVQRELREI--PGVTVLIYDQ 616 (1165)
T ss_pred cCcCcccccHHHHHHHHHHHhcC--CCcEEEEEcC
Confidence 55555554 54 7898888654
No 150
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.19 E-value=2.6e-05 Score=90.39 Aligned_cols=320 Identities=14% Similarity=0.140 Sum_probs=199.5
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcC---CCCeE--EEEEcCCccc-cchHHHHHHHhhhcC---CCEEEEEECCCCCcCCC
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKG---KRECI--VTVISNGTTM-AGQAYEAMSNAGYLD---SNMIVILNDSRHSLHPK 259 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g---~~~~V--v~viGDGal~-eG~~~EAln~A~~~~---~nlivIlndN~~si~~t 259 (603)
+.-.|+=.--++..|.+.|+.-.. +..+| +.+.||.++. +|.+.|.||...... ...+-|+-||+..-
T Consensus 295 ~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGF--- 371 (906)
T COG0567 295 FNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGF--- 371 (906)
T ss_pred CCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCC---
Confidence 455677677788899998853221 12234 4889999988 999999999987543 77888888888653
Q ss_pred ccCCCccc-chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCC
Q 007443 260 IEESPKTS-INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG 338 (603)
Q Consensus 260 ~~~g~s~~-vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDG 338 (603)
+++ -.+ + |. .| -.++.+..+.+++ +|+|
T Consensus 372 -----TTsp~~s--------R-St----------------------------~Y--------~TDvAKm~~aPif-HVN~ 400 (906)
T COG0567 372 -----TTSPADA--------R-ST----------------------------PY--------CTDVAKMIEAPIF-HVNA 400 (906)
T ss_pred -----CCCcccc--------c-CC----------------------------CC--------CCChhhccCCcee-eccc
Confidence 111 100 0 00 01 0233455678888 9999
Q ss_pred CCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccCCc-----------hh-------hhcc-------------
Q 007443 339 HNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQKSE-----------AI-------EKQQ------------- 385 (603)
Q Consensus 339 hD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~~~-----------~~-------g~~~------------- 385 (603)
.|++++..+.+.|.+.. -.++++|.+..++-.|+.-..+.. .| ...+
T Consensus 401 DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~ 480 (906)
T COG0567 401 DDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADE 480 (906)
T ss_pred CCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHH
Confidence 99999988776654432 378999999999998876554322 00 0000
Q ss_pred -----c----C--------C-----C-----C-CCC----------------------CCCC------------------
Q 007443 386 -----E----G--------A-----S-----D-SNS----------------------LPFG------------------ 397 (603)
Q Consensus 386 -----~----~--------~-----~-----~-~~~----------------------~p~~------------------ 397 (603)
. . + . . ... .|..
T Consensus 481 ~~~~~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~ 560 (906)
T COG0567 481 LVNDYRDALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMA 560 (906)
T ss_pred HHHHHHHHhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHh
Confidence 0 0 0 0 0 001 0100
Q ss_pred --CCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchh---------------hhhHhCC----CCeeecchhhHHHH
Q 007443 398 --NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ---------------LFQEKFP----ERYFDVGMAEQHAV 456 (603)
Q Consensus 398 --~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~---------------~f~~~fp----~R~id~GIaE~~~v 456 (603)
.....|..+=.-+...++.....+.+-+.|.++++-.. .+....+ =.++|.+.+|.+++
T Consensus 561 ~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvl 640 (906)
T COG0567 561 EGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVL 640 (906)
T ss_pred ccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHH
Confidence 00111111111122234445566777788887653211 1111111 14679999999999
Q ss_pred HHHHHHhcCCCe--EEEEe-cHHhH---HHHHHHHHHHh-hc--CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHh--cC
Q 007443 457 TFSAGLACGGLK--PFCII-PSAFL---QRAYDQVVNDV-DQ--QRLPVRFVITSAGLVGSDGPTQCGAFDITFMS--CL 525 (603)
Q Consensus 457 g~AaGlA~~G~~--P~~~~-~~~Fl---~ra~dQi~~~~-a~--~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr--~i 525 (603)
|+=-|-+..-.+ .+++. |.+|. |..+||....- .+ ....+++..+| |+-| .||.|+..-.=-+|. .=
T Consensus 641 gFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gyEG-QGPEHSSaRlER~LQLcaE 718 (906)
T COG0567 641 GFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GYEG-QGPEHSSARLERFLQLCAE 718 (906)
T ss_pred hhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CCCC-CCCcCccchhHHHHHhhHH
Confidence 999999987543 44444 99997 78888866531 12 55677888887 6644 699999754323332 33
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh-CCCCcEEEEeecCCCc
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIV 564 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~-~~~~P~~ir~~r~~~~ 564 (603)
-||+|+.|+++.....+++.-+. ....|.++..||.+..
T Consensus 719 ~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR 758 (906)
T COG0567 719 NNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLR 758 (906)
T ss_pred hCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhh
Confidence 59999999999999999985543 3457999998887653
No 151
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.18 E-value=4.2e-06 Score=100.91 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=61.1
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~v 268 (603)
+.-+||.+++.++|++.+ ..+++||++||||++. .|+- ||.+|.+.+.|++++|-||.. |||+|.++..
T Consensus 466 ~~~~MG~~g~~~~G~a~~----~~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~----tAMTGgQp~~ 535 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPF----TETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDA----VAMTGGQPVD 535 (1159)
T ss_pred eeeccCccchhhceeccc----cCCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCc----ccccCCCCCC
Confidence 344688899999999887 3456899999999976 7875 999999999999999999997 5899999988
Q ss_pred hhh
Q 007443 269 NAL 271 (603)
Q Consensus 269 g~l 271 (603)
|.+
T Consensus 536 g~i 538 (1159)
T PRK13030 536 GSI 538 (1159)
T ss_pred CCC
Confidence 754
No 152
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.16 E-value=1.5e-05 Score=83.35 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=97.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCeEEEEEcCC-ccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCcccchhh
Q 007443 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINAL 271 (603)
Q Consensus 194 ~G~~is~A~G~A~A~~l~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s~~vg~l 271 (603)
-|..++.|.|+.+|. ++..||++.||| ++..| +..+.+|...+.|+++|+-||+.-.. |.- ..+++|.|+.
T Consensus 72 ~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgn-TggQ~S~tTp~G~~ 144 (294)
T COG1013 72 HGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGN-TGGQASPTTPKGAK 144 (294)
T ss_pred cCcchhhHHHHHHhc----cCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeeccc-CCCccCCCCCCCce
Confidence 467788999999984 566899999999 45555 46899999999999999999984322 333 4556666654
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHH
Q 007443 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (603)
Q Consensus 272 s~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a 351 (603)
.+... .|.... .+. +...+.-++|..|+.++---++.++.+.+++|
T Consensus 145 t~t~p---------------------~Gk~~~---~k~----------d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA 190 (294)
T COG1013 145 TKTTP---------------------YGKRSE---KKK----------DPGLLAMAAGATYVARASVGDPKDLTEKIKKA 190 (294)
T ss_pred eeecC---------------------CCCCcC---CCC----------CHHHHHHHCCCCeEEEecccCHHHHHHHHHHH
Confidence 32111 121110 010 23567788999999888777899999999999
Q ss_pred HhcCCCCcEEEEEEee--cCCCC
Q 007443 352 ASLGSMGPVLVHVVTE--ENRRA 372 (603)
Q Consensus 352 ~~~~~~gP~lI~v~T~--kG~G~ 372 (603)
.+. +||.+||+.+. .+.++
T Consensus 191 ~~~--~Gps~I~v~sPC~t~~~~ 211 (294)
T COG1013 191 AEH--KGPSFIDVLSPCPTGNGR 211 (294)
T ss_pred Hhc--cCCeEEEEecCCCCCCCc
Confidence 887 89999999985 34444
No 153
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.00013 Score=81.79 Aligned_cols=314 Identities=14% Similarity=0.181 Sum_probs=200.4
Q ss_pred chhhhHHHHHHHHHHHH-----HcCCCCeEEEEEcCCccc-cchHHHHHHHhhhc---CCCEEEEEECCCCCcCCCccCC
Q 007443 193 HGCNSVSAGLGMAVARD-----IKGKRECIVTVISNGTTM-AGQAYEAMSNAGYL---DSNMIVILNDSRHSLHPKIEES 263 (603)
Q Consensus 193 ~~G~~is~A~G~A~A~~-----l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~---~~nlivIlndN~~si~~t~~~g 263 (603)
|+-..=++.+|=-.|.. ..+++..-|.+-||+++. +|.+||.|..-..- -.-.|-||-||+... |
T Consensus 375 HLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgF--T---- 448 (1017)
T KOG0450|consen 375 HLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGF--T---- 448 (1017)
T ss_pred hhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEcccccc--c----
Confidence 33333345556555533 234556678889999988 89999999876522 255888999998764 1
Q ss_pred CcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHH
Q 007443 264 PKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIED 343 (603)
Q Consensus 264 ~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~ 343 (603)
+.|- ...|.+| -.++.+..+.+.+ .|++.|+++
T Consensus 449 -TDPR---------~aRSspY------------------------------------cTDvar~v~aPIF-HVNaDD~EA 481 (1017)
T KOG0450|consen 449 -TDPR---------FARSSPY------------------------------------CTDVARVVNAPIF-HVNADDPEA 481 (1017)
T ss_pred -cCcc---------cccCCCC------------------------------------chhHHHHhCCCeE-eecCCChHH
Confidence 1221 1111111 1244566788888 899999999
Q ss_pred HHHHHHHHHhcC--CCCcEEEEEEeecCCCCCcccCCc-----------hh--------------hh----cc-------
Q 007443 344 LISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQKSE-----------AI--------------EK----QQ------- 385 (603)
Q Consensus 344 l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae~~~-----------~~--------------g~----~~------- 385 (603)
+.-+.+-|.+.. -.+-++|.+..++-.|+.-.++.. .| |. .+
T Consensus 482 V~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~ 561 (1017)
T KOG0450|consen 482 VMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKY 561 (1017)
T ss_pred HHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 998877665431 267899999999999987654422 00 00 00
Q ss_pred -----------cC-C-----------------CC---------CC---------------CCCCC---------------
Q 007443 386 -----------EG-A-----------------SD---------SN---------------SLPFG--------------- 397 (603)
Q Consensus 386 -----------~~-~-----------------~~---------~~---------------~~p~~--------------- 397 (603)
|+ + |+ ++ .+|.+
T Consensus 562 ~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~ 641 (1017)
T KOG0450|consen 562 DNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRA 641 (1017)
T ss_pred HHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHH
Confidence 00 0 00 00 11110
Q ss_pred ----CCCccHHHHHHHH--HHHHHhcCCCEEEEecCCCCCcch---hh-------------hhHhCCC----Ceeecchh
Q 007443 398 ----NYSRTYDDCFIEA--LVMEAEKDKDIVVVHAGMEMDLSL---QL-------------FQEKFPE----RYFDVGMA 451 (603)
Q Consensus 398 ----~~~~s~~~a~~~a--L~~~~~~d~~vvvi~aDl~~~~~l---~~-------------f~~~fp~----R~id~GIa 451 (603)
.+.+.| +.+++ .-.++++.-.|-+-|+|+..++-- .- |..-.|+ -+-|..++
T Consensus 642 ~mi~~~~iDw--al~EalAFgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLS 719 (1017)
T KOG0450|consen 642 QMIKSEGVDW--ALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLS 719 (1017)
T ss_pred Hhhhhcccch--HHHHHHHHHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchh
Confidence 011222 23333 335677788899999999865421 11 1111233 46689999
Q ss_pred hHHHHHHHHHHhcCC--CeEEEEe-cHHhH---HHHHHHHHHHhhc----CCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 452 EQHAVTFSAGLACGG--LKPFCII-PSAFL---QRAYDQVVNDVDQ----QRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 452 E~~~vg~AaGlA~~G--~~P~~~~-~~~Fl---~ra~dQi~~~~a~----~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|-+.+|+-.|.++.. ..++++. |.+|. |..+||.... +. .+.-+++..+| |+-| .||-|+..--=-|
T Consensus 720 EygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIss-GqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERf 796 (1017)
T KOG0450|consen 720 EYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISS-GQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERF 796 (1017)
T ss_pred hhheecceecccccCCCceEEeehhhccccccchhhHHhHhcc-chhhhhhhcCeEEEccC-CcCC-CCcccccccHHHH
Confidence 999999999999984 6777777 99996 8889997653 32 45567778887 7755 7999986321111
Q ss_pred H------------------hcC--CCcEEEecCCHHHHHHHHHHHHhC-CCCcEEEEeecCCCc
Q 007443 522 M------------------SCL--PNMIVMAPSDEDELVDMVATVASI-DDRPVCFRYPRGAIV 564 (603)
Q Consensus 522 l------------------r~i--Pnl~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~ 564 (603)
| +.+ =|++|+-+++|.....+|+.-+.+ -.+|.+|+.||.+..
T Consensus 797 LQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLR 860 (1017)
T KOG0450|consen 797 LQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLR 860 (1017)
T ss_pred HHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhc
Confidence 1 111 288999999999999999976543 457999999998763
No 154
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.01 E-value=0.0003 Score=76.51 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred CCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEE-CCCC-CcCCCccC
Q 007443 185 EYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILN-DSRH-SLHPKIEE 262 (603)
Q Consensus 185 ~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIln-dN~~-si~~t~~~ 262 (603)
..|.-+.|.||-|++.|++.|++ .++++|||+-||+++- ...-.+.++.+++.|+++|+- ||+. ..++
T Consensus 423 rLDaGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~---- 492 (571)
T KOG1185|consen 423 RLDAGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGIYGLDD---- 492 (571)
T ss_pred ccCCccccccccchhHHHHHHhh----CCCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCcccccCc----
Confidence 34555677788777666666666 6999999999999994 443456688899988766665 5553 2210
Q ss_pred CCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHH
Q 007443 263 SPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIE 342 (603)
Q Consensus 263 g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~ 342 (603)
..|.+++|... ..+.+ ...+.. .....++.++||-.-. -|+ .++
T Consensus 493 -------------------~~~~~I~e~~~--~~~~p--~~~l~~----------~~rY~~v~ka~G~kG~-~v~--t~~ 536 (571)
T KOG1185|consen 493 -------------------DGWKQISEQDP--TLDLP--PTALLA----------NTRYDKVAKAFGGKGY-FVS--TVE 536 (571)
T ss_pred -------------------ccHHHHhhcCc--ccCCC--cccccc----------cccHHHHHHHcCCCce-eeC--CHH
Confidence 11222221000 00000 000000 1123677888986554 455 899
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEeecC
Q 007443 343 DLISVLQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 343 ~l~~al~~a~~~~~~gP~lI~v~T~kG 369 (603)
+|..+++++... +++|++|-+.-.+.
T Consensus 537 el~~~l~~a~q~-~~~psvINVlI~p~ 562 (571)
T KOG1185|consen 537 ELLAALQQACQD-TDKPSVINVLIGPT 562 (571)
T ss_pred HHHHHHHHHHhc-CCCCeEEEEEeccc
Confidence 999999998765 36999998876543
No 155
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.97 E-value=2.2e-05 Score=94.52 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=59.7
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccch
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg 269 (603)
.-+||.+.+.++|++.+ .++.+||++||||++. .|+ -|+.+|.+.+.|++++|-||.. |||+|.++..|
T Consensus 494 ~~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~a----vAMTGgQp~~G 563 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDA----VAMTGGQPVDG 563 (1186)
T ss_pred eeccCcchhhheeeccc----CCCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcc----hhccCCCCCCC
Confidence 34688888888888876 3457899999999976 777 4899999999999999999997 58999999887
Q ss_pred hh
Q 007443 270 AL 271 (603)
Q Consensus 270 ~l 271 (603)
.+
T Consensus 564 ~~ 565 (1186)
T PRK13029 564 VL 565 (1186)
T ss_pred cC
Confidence 54
No 156
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.63 E-value=0.0023 Score=61.58 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcC-CCEEEEecCCCCCcchhhhh----H----h-------C---CCCeeecchhhHHHHHHHHHHhcC
Q 007443 405 DCFIEALVMEAEKD-KDIVVVHAGMEMDLSLQLFQ----E----K-------F---PERYFDVGMAEQHAVTFSAGLACG 465 (603)
Q Consensus 405 ~a~~~aL~~~~~~d-~~vvvi~aDl~~~~~l~~f~----~----~-------f---p~R~id~GIaE~~~vg~AaGlA~~ 465 (603)
.++++-|.++++.+ .++-++++|-..+..+.... + . + +++.+..-++|....|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 46777888888776 47999999988877763321 1 1 1 357777889999999999999999
Q ss_pred CCeEEEEecHHhHH---HHHHHHH--HHhhc-----CCC-CeEEEEeCCCC-CCCCCCCCCChhhHHH-HhcCC-CcEEE
Q 007443 466 GLKPFCIIPSAFLQ---RAYDQVV--NDVDQ-----QRL-PVRFVITSAGL-VGSDGPTQCGAFDITF-MSCLP-NMIVM 531 (603)
Q Consensus 466 G~~P~~~~~~~Fl~---ra~dQi~--~~~a~-----~~l-pV~~~~~~~G~-~g~dG~tH~~~~dia~-lr~iP-nl~V~ 531 (603)
|..-++.+|=+|+. -++.|-. ...+. ... .+.++.+.-.. -+.+|-|||...=+.. +...| -+.|+
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 99999999999973 3444411 11111 222 23444443233 3789999996544433 33333 56899
Q ss_pred ecCCHHHHHHHHHHHH
Q 007443 532 APSDEDELVDMVATVA 547 (603)
Q Consensus 532 ~Psd~~e~~~~l~~a~ 547 (603)
.|.|++-+..++..|+
T Consensus 162 lPpDANtlLav~~~cl 177 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCL 177 (179)
T ss_dssp E-SSHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHh
Confidence 9999999999999885
No 157
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.53 E-value=0.00045 Score=73.85 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCcccchhhhhhhhhhhhhhhHHHHHHHHh
Q 007443 214 RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (603)
Q Consensus 214 ~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~ 292 (603)
+..||++.|||... .+-+.++.+|...+.|+++||-||..-. .|+. ..+++|.|+.++.-.
T Consensus 151 ~~~v~v~gGDG~~y-dIG~~~l~ha~~r~~ni~~iv~DNe~Y~-nTGgQ~S~tTp~Ga~t~tsp---------------- 212 (365)
T cd03377 151 KKSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYS-NTGGQASKATPLGAVAKFAA---------------- 212 (365)
T ss_pred ccceEEEecchhhh-ccchhhHHHHHHcCCCeEEEEECCcccc-cCCCcCCCCCCCcCcCccCC----------------
Confidence 35899999999653 2335689999988999999999998432 2333 345666665432210
Q ss_pred hhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCC-CCHHHHHHHHHHHHhcCCCCcEEEEEEee
Q 007443 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDG-hD~~~l~~al~~a~~~~~~gP~lI~v~T~ 367 (603)
.|+... + -+...++-++|..|+..+-- -|+.++.+++++|.+. +||.+||+.+.
T Consensus 213 -----~Gk~~~----k----------kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~--~Gps~I~v~sP 267 (365)
T cd03377 213 -----AGKRTG----K----------KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEAY--DGPSLIIAYSP 267 (365)
T ss_pred -----CCCCCC----C----------cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhcC--CCCEEEEEEcc
Confidence 121110 0 12346677899999988755 5999999999999987 99999999986
No 158
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.44 E-value=0.12 Score=56.01 Aligned_cols=209 Identities=16% Similarity=0.173 Sum_probs=108.5
Q ss_pred hhHHhhcCCeEEeecCCCC----HHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCchhhhcccCCCCCCCCCCC
Q 007443 322 STLFEELGLYYIGPVDGHN----IEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFG 397 (603)
Q Consensus 322 ~~lfea~G~~~ig~vDGhD----~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~~~g~~~~~~~~~~~~p~~ 397 (603)
..+++++|++|. .++ .| .+.+.++++.+.+. ++|+.|.+.---...|... .+ ..+ ..
T Consensus 108 ~~lL~~~~i~~~-~~~-~~~~~~~~~~~~a~~~~~~~--~~p~a~l~~~~~~~~~~~~---~~------~~~------~~ 168 (361)
T TIGR03297 108 LSLLDALEIPWE-VLS-TDNDEALAQIERALAHALAT--SRPYALVVRKGTFASYKLK---GE------PAN------PL 168 (361)
T ss_pred HHHHHHcCCCEE-ECC-CChHHHHHHHHHHHHHHHHH--CCCEEEEEccccccccccc---cC------CCC------CC
Confidence 357899999999 674 23 34455566666665 8999988752211112110 00 000 00
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch--hhhhHh----CCCCeeecchhhHHHHHHHHHHhcCC-CeEE
Q 007443 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL--QLFQEK----FPERYFDVGMAEQHAVTFSAGLACGG-LKPF 470 (603)
Q Consensus 398 ~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l--~~f~~~----fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~ 470 (603)
....+..+++ +.+.+.+. ++.+|+. |.+. ... -.+.+. +|.+|+.+|--= +..++|.|+|+.- -+++
T Consensus 169 ~~~~~r~~ai-~~i~~~l~-~~~iVV~--~~G~-~s~el~~~~~~~~~~~~~~f~~~GsMG-~a~p~AlG~ala~p~r~V 242 (361)
T TIGR03297 169 PTLMTREEAI-AAILDHLP-DNTVIVS--TTGK-TSRELYELRDRIGQGHARDFLTVGSMG-HASQIALGLALARPDQRV 242 (361)
T ss_pred cCCCCHHHHH-HHHHHhCC-CCCEEEE--CCCC-CcHHHHHhhcccccCCCCceEeechhh-hHHHHHHHHHHHCCCCCE
Confidence 0114444444 34444443 2344543 4332 221 122211 277787654322 3346777777652 3556
Q ss_pred EEec--HHhHHHHHHHHHHHhhcCC-CCeEEEEeCCCCCCCCC--CCCCChhhHH-HHhcCCCc-EEEecCCHHHHHHHH
Q 007443 471 CIIP--SAFLQRAYDQVVNDVDQQR-LPVRFVITSAGLVGSDG--PTQCGAFDIT-FMSCLPNM-IVMAPSDEDELVDMV 543 (603)
Q Consensus 471 ~~~~--~~Fl~ra~dQi~~~~a~~~-lpV~~~~~~~G~~g~dG--~tH~~~~dia-~lr~iPnl-~V~~Psd~~e~~~~l 543 (603)
+.+- ..|++..-+ +.. ++..+ .|++++....|..+..| +++....|+. +.+.. |. ..+...+..|+..++
T Consensus 243 v~i~GDGsflm~~~e-L~t-~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al 319 (361)
T TIGR03297 243 VCLDGDGAALMHMGG-LAT-IGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETAL 319 (361)
T ss_pred EEEEChHHHHHHHHH-HHH-HHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHH
Confidence 6664 446544322 322 34455 47776655444322222 2333334433 33443 54 567889999999999
Q ss_pred HHHHhCCCCcEEEEee
Q 007443 544 ATVASIDDRPVCFRYP 559 (603)
Q Consensus 544 ~~a~~~~~~P~~ir~~ 559 (603)
+.+.. .++|++|...
T Consensus 320 ~~a~~-~~gp~lIeV~ 334 (361)
T TIGR03297 320 TAASS-ANGPRLIEVK 334 (361)
T ss_pred HHHHh-CCCcEEEEEE
Confidence 99954 5899988664
No 159
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.20 E-value=0.012 Score=65.78 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccchhhhhhh
Q 007443 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTL 275 (603)
Q Consensus 197 ~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~vg~ls~~l 275 (603)
.+|.|+|++.| ...++|++|||=++-.-+. +|-......-| .||++|||+=+|- ..|
T Consensus 427 ~vSTA~Gi~~a-----~~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF---------------~~L 484 (566)
T COG1165 427 TVSTALGIARA-----TQKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIF---------------SLL 484 (566)
T ss_pred hHHHHhhhhhh-----cCCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceee---------------eec
Confidence 46778899987 3456999999999864432 34444444455 5666777775441 122
Q ss_pred hhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC
Q 007443 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG 355 (603)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~ 355 (603)
..-+....| +.++.---.-||+.+.+.||++|. .+ +++.++.++++.+-..
T Consensus 485 p~~~~~~~f-------------------------e~~F~tPh~ldF~~la~~y~l~y~-~~--~s~~~l~~~~~~~~~~- 535 (566)
T COG1165 485 PQAQSEPVF-------------------------ERLFGTPHGLDFAHLAATYGLEYH-RP--QSWDELGEALDQAWRR- 535 (566)
T ss_pred cCCCCcchH-------------------------HHhcCCCCCCCHHHHHHHhCcccc-cc--CcHHHHHHHHhhhccC-
Confidence 111100000 011110001267888899999999 33 4899999999887654
Q ss_pred CCCcEEEEEEeecCC
Q 007443 356 SMGPVLVHVVTEENR 370 (603)
Q Consensus 356 ~~gP~lI~v~T~kG~ 370 (603)
.|-++||++|.+-.
T Consensus 536 -~g~~viEvkt~r~~ 549 (566)
T COG1165 536 -SGTTVIEVKTDRSD 549 (566)
T ss_pred -CCcEEEEEecChhH
Confidence 68999999997644
No 160
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.05 E-value=0.019 Score=54.28 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCC--CCCCCChhhH
Q 007443 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD--GPTQCGAFDI 519 (603)
Q Consensus 442 p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~d--G~tH~~~~di 519 (603)
.-+++.+- .|+..+.+|.|.++.|.+.++.+..+=+.++.+.+.+. ...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 45777777 99999999999999887755555777778889998875 44689999998654443222 2223333333
Q ss_pred HHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEee
Q 007443 520 TFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYP 559 (603)
Q Consensus 520 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~ 559 (603)
.+++ |-.-++.+.+++|+..+++.|+. ...+|+++++.
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3332 34667779999999888877753 23479998863
No 161
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.90 E-value=0.025 Score=65.12 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=84.6
Q ss_pred CeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhc--CCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ--QRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~--~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
-++.-...|..++.+|.|.|..|.|.++.+=..=+..+.|+|.. +++ ...|++++.... .| -++++..-.|+.+
T Consensus 47 ~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~--~g-p~~~~~~q~d~~~ 122 (595)
T TIGR03336 47 VYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADD--PS-MHSSQNEQDTRHY 122 (595)
T ss_pred EEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccC--CC-CccchhhHhHHHH
Confidence 45566669999999999999999999999965556678888876 353 467777766432 12 3467666667666
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
.+. -++.|+.|+|.+|+..+...|+. ...-||+++...
T Consensus 123 ~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~ 163 (595)
T TIGR03336 123 AKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT 163 (595)
T ss_pred HHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 664 58889999999999998887764 356699998854
No 162
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=96.84 E-value=0.0018 Score=67.48 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=91.7
Q ss_pred CcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCccc
Q 007443 188 PFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 188 ~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~ 267 (603)
.--+|++|+.+++|+|+-.| .+++.||++-||-.++ ...|.|...+..|.|.|.++-||.|-
T Consensus 415 cgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnayl------------ 476 (592)
T COG3960 415 CGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYL------------ 476 (592)
T ss_pred cCccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHH------------
Confidence 34578999999999999877 6888999999999997 67799999999999999999999862
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH-hhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE-YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
| + +|..+.+|---. ..+-....++. -.++ .+-|.....|++|.+.+ +| .+++++..
T Consensus 477 -g-l---------------irqaqr~f~mdy--~v~laf~nin~~~~~g-ygvdhv~v~eglgckai-rv--~~p~e~a~ 533 (592)
T COG3960 477 -G-L---------------IRQAQRAFDMDY--CVQLAFENINSSEVNG-YGVDHVKVAEGLGCKAI-RV--FKPEDIAP 533 (592)
T ss_pred -H-H---------------HHHHHhcCCccc--eeeehhhccCCccccc-cCccceeehhccCceeE-Ee--cChHHhhH
Confidence 1 1 122211110000 00000000000 0001 12244667899999988 33 37888888
Q ss_pred HHHHHHhcC--CCCcEEEEEEeec
Q 007443 347 VLQEVASLG--SMGPVLVHVVTEE 368 (603)
Q Consensus 347 al~~a~~~~--~~gP~lI~v~T~k 368 (603)
+|++++... ..-|+++++.-++
T Consensus 534 af~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 534 AFEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHHHhcCCCeeeehHHHH
Confidence 888876532 3569999987654
No 163
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=96.83 E-value=0.015 Score=62.65 Aligned_cols=120 Identities=19% Similarity=0.126 Sum_probs=91.4
Q ss_pred hHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChh
Q 007443 438 QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAF 517 (603)
Q Consensus 438 ~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~ 517 (603)
.+++...|++ .-+|..++++|.|.|..|.|.++.+-+..+..+++++-. ++-..+|++++....+. ..-|.|+..-.
T Consensus 44 ~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l~~-a~~~e~P~v~v~v~R~~-p~~g~t~~eq~ 120 (352)
T PRK07119 44 LPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGISY-LAGAELPCVIVNIMRGG-PGLGNIQPSQG 120 (352)
T ss_pred HHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHHHH-HHHccCCEEEEEeccCC-CCCCCCcchhH
Confidence 3445566788 999999999999999999999999988888999999877 47899998886644332 12334666666
Q ss_pred hHHHHhc-----CCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 518 DITFMSC-----LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 518 dia~lr~-----iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
|+.+.+. --++.|+.|+|++|+..+...|+. ...-|++++...
T Consensus 121 D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (352)
T PRK07119 121 DYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDG 171 (352)
T ss_pred HHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcch
Confidence 7655432 224899999999999998887764 345699998754
No 164
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.69 E-value=0.0052 Score=75.56 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=80.9
Q ss_pred CeEEEEEcCCcc-ccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCcccchhhhhhhhhhhhhhhHHHHHHHHh
Q 007443 215 ECIVTVISNGTT-MAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (603)
Q Consensus 215 ~~Vv~viGDGal-~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~-~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~ 292 (603)
..||++.|||.. .-| +.++.++...+.|+.+||-||..- ..|+. ..+++|.|+.++.-.
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y-~nTggQ~S~~tp~g~~t~~~~---------------- 1012 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVY-SNTGGQSSKATPTGAIAKFAA---------------- 1012 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCccc-ccCCCcCCCCCCCcCccccCC----------------
Confidence 479999999965 444 468999999999999999999843 23443 345666665432210
Q ss_pred hhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecC-CCCHHHHHHHHHHHHhcCCCCcEEEEEEee
Q 007443 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (603)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vD-GhD~~~l~~al~~a~~~~~~gP~lI~v~T~ 367 (603)
.|.... .-|...++.++|..|+..+- |-++.++.+++++|.+. +||.+||+.+.
T Consensus 1013 -----~g~~~~--------------kkd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~~--~G~s~i~~~~p 1067 (1165)
T TIGR02176 1013 -----AGKRTS--------------KKDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEAY--DGPSIVIAYSP 1067 (1165)
T ss_pred -----CCCCCC--------------CcCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHcC--CCCEEEEEECC
Confidence 111100 01224567789999998886 56999999999999887 89999999986
No 165
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=96.51 E-value=0.0074 Score=61.22 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=79.6
Q ss_pred eeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 445 ~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
.+--.-.|..+++++.|.|..|.|.++.+=+.=+..+.|.|.. ++..++|++++....+..+..+++|+.-.|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l~~-a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPLYW-AAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCHHH-HHHTT--EEEEEEEB---SSSB--SB-SHHHHHTT-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHHHH-HHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHH-
Confidence 5566778999999999999999999998855545566777766 47899999987654343344477898888977766
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCCC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGAI 563 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~~ 563 (603)
--++.|+.|+|++|+..+...|.. ....||+++......
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 568899999999999998877753 356799998865443
No 166
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=96.36 E-value=0.046 Score=59.50 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred CCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEE-eCCCCCCCCCCCCCChhhHH
Q 007443 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDIT 520 (603)
Q Consensus 442 p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~-~~~G~~g~dG~tH~~~~dia 520 (603)
-..|++.- +|..++++|.|.|..|.|.++.+-+.=+..+.+++-.. +-.++|++++. .++|-. ..-+|++.-.|+-
T Consensus 48 ~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~~~a-~~~e~P~Viv~~~R~gp~-tg~p~~~~q~D~~ 124 (376)
T PRK08659 48 GGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENIGYA-AMTETPCVIVNVQRGGPS-TGQPTKPAQGDMM 124 (376)
T ss_pred CCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHHHHH-HHcCCCEEEEEeecCCCC-CCCCCCcCcHHHH
Confidence 35678877 99999999999999999999998666566778888664 45689988865 444432 1235666656655
Q ss_pred HHhc----CCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 521 FMSC----LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 521 ~lr~----iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
..+. -=++.|++|+|++|+..+...|+. ...-|++++...
T Consensus 125 ~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (376)
T PRK08659 125 QARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE 171 (376)
T ss_pred HHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech
Confidence 5441 123689999999999998887764 345699987743
No 167
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.18 E-value=0.036 Score=52.03 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=78.4
Q ss_pred cchhhHHHHHHHHHHhcCCC-eEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACGGL-KPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~G~-~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|+.++.+|.|.++.+- ..++.. ..+=+..+...|.+. ...+.|++++....+.....-.+||......+++.+
T Consensus 39 ~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A-~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~ 117 (155)
T cd07035 39 LVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANA-YLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPI 117 (155)
T ss_pred EeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHH-HhhCCCEEEEeCCCccccccCCcccccCHHHHHHHH
Confidence 45599999999999999754 444444 455467777888764 567999999986655533333346666677788877
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhC---C-CCcEEEEeec
Q 007443 526 PNMIVMAPSDEDELVDMVATVASI---D-DRPVCFRYPR 560 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~~---~-~~P~~ir~~r 560 (603)
-.. .+...+++++...+..|+.. . .+|++|.+|+
T Consensus 118 ~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 118 TKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred hce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 655 56667888888877777642 2 5799998763
No 168
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=95.90 E-value=0.14 Score=56.10 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEE-eCCCCCCCCCCCCCChhhHHHHhcCCC
Q 007443 449 GMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITFMSCLPN 527 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~-~~~G~~g~dG~tH~~~~dia~lr~iPn 527 (603)
.=+|..++++|.|.|..|.|.++.+-+.=+..+.|+|.. ++...+|++++. .|+|-+ .+++|..-.|+...+. .+
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l~~-aa~~~lPiVi~~~~R~~p~--~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGLALMHEMLHW-AAGARLPIVMVDVNRAMAP--PWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHHHH-HHhcCCCEEEEEeccCCCC--CCCCcchhhHHHHHhh-cC
Confidence 348999999999999999999999966656778899877 478899999765 444432 4688877788766654 58
Q ss_pred cEEEecCCHHHHHHHHHHHHh---CCCCcEEEEee
Q 007443 528 MIVMAPSDEDELVDMVATVAS---IDDRPVCFRYP 559 (603)
Q Consensus 528 l~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~ 559 (603)
+.+++|+|.+|+..+...|+. +-.-|++++..
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~D 165 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVES 165 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 999999999999998877753 34568888773
No 169
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=95.73 E-value=0.061 Score=58.51 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=83.9
Q ss_pred CeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEE-eCCCCCCCCCCCCCChhhHHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITFM 522 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~-~~~G~~g~dG~tH~~~~dia~l 522 (603)
.|+.+= +|..++++|.|.|..|.|.++.+-+.=+..+.+++-.. +-..+|++++. .|+|... .-+|...-.|+...
T Consensus 49 ~~vq~E-~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~~~a-~~~e~P~V~~~~~R~Gpst-G~p~~~~q~D~~~~ 125 (375)
T PRK09627 49 TFIQME-DEISGISVALGASMSGVKSMTASSGPGISLKAEQIGLG-FIAEIPLVIVNVMRGGPST-GLPTRVAQGDVNQA 125 (375)
T ss_pred EEEEcC-CHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHHHHH-HhccCCEEEEEeccCCCcC-CCCCccchHHHHHH
Confidence 344443 99999999999999999999998665556677888764 67899999854 4555522 24676666777666
Q ss_pred h-----cCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 523 S-----CLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 523 r-----~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
+ ..|.+ |++|+|++|+..+...|+. +-.-|++++...
T Consensus 126 ~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 126 KNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred hcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 6 44555 9999999999998877754 345699887743
No 170
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=95.49 E-value=0.33 Score=53.47 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=98.8
Q ss_pred cCCCEEEEecCCCCCcch-hhhhHhCC-----CCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhh
Q 007443 417 KDKDIVVVHAGMEMDLSL-QLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD 490 (603)
Q Consensus 417 ~d~~vvvi~aDl~~~~~l-~~f~~~fp-----~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a 490 (603)
.+.+++..=+=.. ++-+ +.+.+..| ..|+.+= +|..+++++.|.|..|.|.++.+-+.=+..+.|.|.. ++
T Consensus 26 Ag~~~~a~YPITP-sTeI~e~la~~~~~g~~~~~~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~~-aa 102 (407)
T PRK09622 26 AQIDVVAAYPITP-STPIVQNYGSFKANGYVDGEFVMVE-SEHAAMSACVGAAAAGGRVATATSSQGLALMVEVLYQ-AS 102 (407)
T ss_pred hCCCEEEEECCCC-ccHHHHHHHHHhhCCCcCcEEEeec-cHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHHHH-HH
Confidence 3556655544332 2323 33444333 2455544 9999999999999999999999866656678888877 47
Q ss_pred cCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhC---C--CCcEEEEeec
Q 007443 491 QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---D--DRPVCFRYPR 560 (603)
Q Consensus 491 ~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---~--~~P~~ir~~r 560 (603)
...+|++++....|+.+ .-+++..-.|+...| -.++.+++|+|++|+..+...|... . .-|++++...
T Consensus 103 ~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg 175 (407)
T PRK09622 103 GMRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDG 175 (407)
T ss_pred HhhCCEEEEEeccccCC-CcCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEech
Confidence 89999777665545422 356788777876665 4789999999999999988877643 2 5799997744
No 171
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=95.39 E-value=0.076 Score=60.80 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEE-eCCCCCCCCCCCCCChhhHHH
Q 007443 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 443 ~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~-~~~G~~g~dG~tH~~~~dia~ 521 (603)
+-.+--.=+|..++++|.|.|..|.|.++.+-+.=+..+.|.+-. ++...+|++++. .++|.. ..-+|+..-.|+-+
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l~~-a~~~~~P~Vi~~~~R~gps-tg~~t~~eq~D~~~ 314 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEALGL-AGMTETPLVIVDVQRGGPS-TGLPTKTEQSDLLF 314 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHHhH-HHhccCCEEEEEcccCCCC-CCCCCCccHHHHHH
Confidence 345555669999999999999999999999855545577888855 456899999876 444442 23467877788766
Q ss_pred HhcCC----CcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEee
Q 007443 522 MSCLP----NMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYP 559 (603)
Q Consensus 522 lr~iP----nl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~ 559 (603)
.+.-- ++.|++|+|++|+..+...|+. +-.-||+++..
T Consensus 315 ~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D 359 (562)
T TIGR03710 315 ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSD 359 (562)
T ss_pred HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 65322 4899999999999998877754 35569988764
No 172
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=95.28 E-value=0.25 Score=47.42 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred CeeecchhhHHHHHHHHHHhcCCC-eEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC-CCCCCCCChhhHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACGGL-KPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDIT 520 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~G~-~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g-~dG~tH~~~~dia 520 (603)
|++ ....|++++.+|.|.++.+- ..++.. ..+=+..+..-|.+ +...+.||+++....+... ..|..|+......
T Consensus 41 ~~i-~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~ 118 (172)
T PF02776_consen 41 RFI-PVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN-AYADRIPVLVITGQRPSAGEGRGAFQQEIDQQS 118 (172)
T ss_dssp EEE-E-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH-HHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHH
T ss_pred eee-cccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh-cccceeeEEEEecccchhhhcccccccchhhcc
Confidence 444 47899999999999998644 444444 33324556666655 3557999999987666632 2577776677778
Q ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 521 FMSCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 521 ~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
+++.+-.. .+.+.++.++...++.|+ ....+|++|-+|+..
T Consensus 119 ~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 119 LFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp HHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred hhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 88877644 455556665555554443 456899999999765
No 173
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.86 E-value=0.41 Score=45.68 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhh-cCCCCeEEEEeCCCCCCCCCCCCC--ChhhHHHHhcC
Q 007443 449 GMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMSCL 525 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a-~~~lpV~~~~~~~G~~g~dG~tH~--~~~dia~lr~i 525 (603)
.-.|...+++|+|.++.|.+|.+..-.+=+..+..-|... . ..+.||+++...-|-.|..-+.|. +...-..|..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~~a-~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALASL-NKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHHHH-HHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 7789999999999999888888777333345677777653 4 688999999866665333322221 11111222221
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRG 561 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~ 561 (603)
++......+++|+ ..++.|+. ..++|++|..++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2234455566676 65555542 3459999999875
No 174
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.24 E-value=0.91 Score=49.79 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=94.2
Q ss_pred cCCCEEEEecCCCCCcch-hhhhHhCC--CC--eeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhc
Q 007443 417 KDKDIVVVHAGMEMDLSL-QLFQEKFP--ER--YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (603)
Q Consensus 417 ~d~~vvvi~aDl~~~~~l-~~f~~~fp--~R--~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~ 491 (603)
...+++..=+=.. ++-+ +.+.+..+ +. .+-..=+|..++++|.|.|..|.|.+..+-+.=+..+.|+|.. ++.
T Consensus 20 Ag~~v~a~YPITP-sTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~~-aag 97 (394)
T PRK08367 20 AKPKVIAAFPITP-STLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVRTFTATASQGLALMHEVLFI-AAG 97 (394)
T ss_pred hCCCEEEEECCCC-ccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHHHH-HHH
Confidence 4556665544322 2333 33443333 22 1223348999999999999999999999866666788899877 588
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCC-----CcEEEEeec
Q 007443 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD-----RPVCFRYPR 560 (603)
Q Consensus 492 ~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~-----~P~~ir~~r 560 (603)
.++|++++....++.. --.+|..--|+...|. -++.++.|+|.+|+..+...|..... -|++++...
T Consensus 98 ~~lP~V~vv~~R~~~~-p~~i~~d~~D~~~~rd-~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dg 169 (394)
T PRK08367 98 MRLPIVMAIGNRALSA-PINIWNDWQDTISQRD-TGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDA 169 (394)
T ss_pred ccCCEEEEECCCCCCC-CCCcCcchHHHHhccc-cCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEech
Confidence 9999999874333322 2356665566544454 45888999999999998877764322 499998754
No 175
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.94 E-value=0.37 Score=46.27 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=71.9
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
..-.|++++.+|-|.|+. |...++.. ..+=+..+.--|.+. ...+.||+++.........+-.+||......+++.+
T Consensus 40 ~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~v 118 (162)
T cd07037 40 VRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEA-YYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDY 118 (162)
T ss_pred eccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHH-HhcCCCEEEEECCCCHHhcCCCCCcccchhhhccce
Confidence 467899999999999985 54444333 777777777777663 568999999875443322223347777777777755
Q ss_pred CCcE--EEecCC-------HHHHHHHHHHHHhCCCCcEEEEee
Q 007443 526 PNMI--VMAPSD-------EDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 526 Pnl~--V~~Psd-------~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
=.+. |-.|.+ +..+..+++.|....+||++|-+|
T Consensus 119 tk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 119 VRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 4332 233444 444555666664445689998665
No 176
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.87 E-value=0.5 Score=45.25 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=66.8
Q ss_pred hCCCCeeecch--hhHHHHHHHHHHhcCC-CeEEEEecHH--hHHHHHHHHHHHhhcCCCCeEEEEeC-CCCCCC----C
Q 007443 440 KFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIPSA--FLQRAYDQVVNDVDQQRLPVRFVITS-AGLVGS----D 509 (603)
Q Consensus 440 ~fp~R~id~GI--aE~~~vg~AaGlA~~G-~~P~~~~~~~--Fl~ra~dQi~~~~a~~~lpV~~~~~~-~G~~g~----d 509 (603)
..|.+++..+. +=...+++|.|.++.. -+|++.+..+ |... ...+. .++..++|++++.-. .|+... .
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el~-ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMELE-TAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHHH-HHHHcCCCEEEEEEECcccccchhhhh
Confidence 44888887653 2223555666777654 3566666444 5432 33443 356789998877644 344210 0
Q ss_pred ----CCCCC----ChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 510 ----GPTQC----GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 510 ----G~tH~----~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
+..+. ...|.. +.+. =|+..+.-.+.+|++.+++.+.. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 122332 3333 26777777899999999999965 588998754
No 177
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.60 E-value=1 Score=42.90 Aligned_cols=145 Identities=16% Similarity=0.225 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcchhhh-hHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecH--HhHHHH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF-QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPS--AFLQRA 481 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f-~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~--~Fl~ra 481 (603)
..+.+.|.+.+ . +.+|+. |.+. +...-+ ....|.+|+..|---. .++.|.|++..-.+|++.+.. .|++-.
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~--d~G~-~~~~~~~~~~~~~~~~~~gsmG~-~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~ 75 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVS--TTGY-ASRELYDVQDRDGHFYMLGSMGL-AGSIGLGLALGLSRKVIVVDGDGSLLMNP 75 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEe--CCCH-hHHHHHHhhcCCCCEEeecchhh-HHHHHHHHHhcCCCcEEEEECchHHHhcc
Confidence 34555666655 2 445554 4332 222222 2345888886332211 223566666543377777744 465443
Q ss_pred HHHHHHHhhcC-CCCeEEEE-eCCCCCCCCC--CCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 007443 482 YDQVVNDVDQQ-RLPVRFVI-TSAGLVGSDG--PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (603)
Q Consensus 482 ~dQi~~~~a~~-~lpV~~~~-~~~G~~g~dG--~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir 557 (603)
-+ +.. ++.. ++|++++. ...++ |.-+ .++....|..-+..-=|+..+...+++|+...++.++. .++|++|.
T Consensus 76 ~e-l~t-~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~ 151 (157)
T cd02001 76 GV-LLT-AGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLH 151 (157)
T ss_pred cH-HHH-HHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 33 222 2344 58998776 44444 2111 22322234433333336666777899999999999975 58999876
Q ss_pred ee
Q 007443 558 YP 559 (603)
Q Consensus 558 ~~ 559 (603)
..
T Consensus 152 v~ 153 (157)
T cd02001 152 AP 153 (157)
T ss_pred EE
Confidence 53
No 178
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.50 E-value=1.5 Score=46.34 Aligned_cols=113 Identities=5% Similarity=0.034 Sum_probs=70.4
Q ss_pred eecchhhHHHHHHHHHHhcC------CCeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCC---
Q 007443 446 FDVGMAEQHAVTFSAGLACG------GLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--- 514 (603)
Q Consensus 446 id~GIaE~~~vg~AaGlA~~------G~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~--- 514 (603)
+++.+.-+. ++|.|++.. +-..|+.+ =+++.+-.++.+.+ ++..++||+++.-.....+.-|.+-+
T Consensus 67 i~~~~G~~~--~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~-A~~~~~~v~~vv~dN~~~~~TGgQ~S~~T 143 (300)
T PRK11864 67 LHTAFAATA--AVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSG-AAERNHDILYIMYDNEAYMNTGIQRSSST 143 (300)
T ss_pred eeehhhChH--HHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHH-HHHhCcCEEEEEECCeeeecCCCCCCCCC
Confidence 344444444 444444432 33456544 34456666766655 57899999998755443221121111
Q ss_pred ------------------ChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCC
Q 007443 515 ------------------GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 515 ------------------~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
.+..+.....+|-+..+.|+++.++...++.|++ .+||.+|..-...
T Consensus 144 p~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~spC 208 (300)
T PRK11864 144 PYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLAPC 208 (300)
T ss_pred cCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeCCC
Confidence 1244555456677888999999999999999975 6899999764433
No 179
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=92.26 E-value=5.1 Score=40.80 Aligned_cols=118 Identities=10% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCCCeeecchhhHHHHHHHHHHhc----C------CCeEEEEecHHh--HHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC
Q 007443 441 FPERYFDVGMAEQHAVTFSAGLAC----G------GLKPFCIIPSAF--LQRAYDQVVNDVDQQRLPVRFVITSAGLVGS 508 (603)
Q Consensus 441 fp~R~id~GIaE~~~vg~AaGlA~----~------G~~P~~~~~~~F--l~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~ 508 (603)
+|.++++..+.-+..+|.+...|. . --+|++.+-.+- ++..+..+.+. ...++||+++.-..+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta-~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHS-LFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHH-HHcCCCeEEEEECCccccC
Confidence 456677776555566665444443 2 135677775553 33455555554 4578999988755543222
Q ss_pred CCCCCCC------------------hhhH-HHHhcC--CCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 509 DGPTQCG------------------AFDI-TFMSCL--PNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 509 dG~tH~~------------------~~di-a~lr~i--Pnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
-+.+++. ..|+ .+.++. +....+.+.++.|++.+++.++.+.++|++|-..
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~ 201 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAY 201 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111110 1122 333333 3333335999999999999997525899988654
No 180
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=91.85 E-value=1.7 Score=41.56 Aligned_cols=113 Identities=9% Similarity=-0.010 Sum_probs=75.3
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
=..-.|+++.-+|.|.|+. |...++.. ..+=+..+.--+.+. ...+.||+++.............+|......+++.
T Consensus 42 v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A-~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~ 120 (164)
T cd07039 42 IQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDA-KRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKD 120 (164)
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-HhcCCCEEEEecCCcccccCCCCCcccCHHHHHHH
Confidence 3577899999999999986 54333333 555556666666663 56889999987543332111224777777788887
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRG 561 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~ 561 (603)
+-.+. ..+.++.++...++.|+. ...+||+|-+|+.
T Consensus 121 ~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 121 VAVYN-ETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred hhcEE-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 76544 445677777776666653 2469999988865
No 181
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.23 E-value=3.3 Score=43.37 Aligned_cols=152 Identities=9% Similarity=0.080 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEecHH--h
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSA--F 477 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~~~~--F 477 (603)
.....++.++|.++....++.+++ .|++-+..+..+. .-..+++.. ...+.+|.|+++.. -++|+.+-.+ +
T Consensus 16 ~~il~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~~---~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~ 89 (279)
T PRK11866 16 YGILEALRKALAELGIPPENVVVV-SGIGCSSNLPEFL---NTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDG 89 (279)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhhc---cCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHH
Confidence 345677778886665444554443 5655333222221 112233332 44566677776653 3555555333 4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCC---CC-CCCCCC--------C---------ChhhHHHHhcCCCcEEEecCCH
Q 007443 478 LQRAYDQVVNDVDQQRLPVRFVITSAGL---VG-SDGPTQ--------C---------GAFDITFMSCLPNMIVMAPSDE 536 (603)
Q Consensus 478 l~ra~dQi~~~~a~~~lpV~~~~~~~G~---~g-~dG~tH--------~---------~~~dia~lr~iPnl~V~~Psd~ 536 (603)
+.-.+..+.+ ++..++|++++.-..+. ++ ..-++- . ....++.....+.+....+.++
T Consensus 90 f~ig~~eL~t-A~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~ 168 (279)
T PRK11866 90 YGIGLGHLPH-AARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDV 168 (279)
T ss_pred HHccHHHHHH-HHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCH
Confidence 5666777777 47788999888755543 22 111110 0 1112333223444556667999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeec
Q 007443 537 DELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 537 ~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
.|++.+++.|+. .++|++|-.-.
T Consensus 169 ~~l~~~l~~Al~-~~Gps~I~v~~ 191 (279)
T PRK11866 169 KHLKEIIKEAIK-HKGFSFIDVLS 191 (279)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeC
Confidence 999999999975 68999886533
No 182
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=91.11 E-value=3.5 Score=43.34 Aligned_cols=148 Identities=11% Similarity=0.155 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhh---HHHHHHHHHHhcCC-CeEEEEec--H
Q 007443 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAE---QHAVTFSAGLACGG-LKPFCIIP--S 475 (603)
Q Consensus 402 s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE---~~~vg~AaGlA~~G-~~P~~~~~--~ 475 (603)
....++.++|.++.-..++.+ +..|++-.. +.| +++++.--- ...+.+|.|+++.. -+||+.+- .
T Consensus 11 ~i~~~~~~a~~~l~~~p~d~i-ivsdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG 81 (287)
T TIGR02177 11 GILSALQRALAELNLDPEQVV-VVSGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDG 81 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCEE-EEECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCch
Confidence 345677777777654444544 445765432 124 555543221 23555677766653 35566553 3
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCC---CC-CCCCCC----------CC----hhhHHHHhcCCCc--E-EEecC
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL---VG-SDGPTQ----------CG----AFDITFMSCLPNM--I-VMAPS 534 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~---~g-~dG~tH----------~~----~~dia~lr~iPnl--~-V~~Ps 534 (603)
+|+.-....+.+ ++..++||+++.-..+. ++ ..-++- .+ ..|+.++..--+. . .....
T Consensus 82 ~f~~mg~~eL~t-A~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~ 160 (287)
T TIGR02177 82 DLYGIGGNHFVA-AGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSG 160 (287)
T ss_pred HHHhccHHHHHH-HHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecC
Confidence 454455566666 46789999988755433 22 111110 00 1122222211222 2 22358
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 535 DEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 535 d~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
++.|+..+++.|+. .++|++|-.-.
T Consensus 161 ~~~eL~~ai~~Al~-~~GpslIeV~~ 185 (287)
T TIGR02177 161 DVAHLKEIIKEAIN-HKGYALVDILQ 185 (287)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 99999999999975 68999886543
No 183
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.09 E-value=4.9 Score=42.48 Aligned_cols=106 Identities=8% Similarity=0.141 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcC----CC-eEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCC-----------
Q 007443 453 QHAVTFSAGLACG----GL-KPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC----------- 514 (603)
Q Consensus 453 ~~~vg~AaGlA~~----G~-~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~----------- 514 (603)
.+.+++|.|++.. +. ++|+.+ =++|..-++..+.+ ++..+.++++++-..+..+.-|.+-+
T Consensus 72 g~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~-a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~t 150 (299)
T PRK11865 72 ENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSG-AMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTT 150 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHH-HHHcCCCeEEEEECCccccCCCCCCCCCCCCCccccc
Confidence 3556667776653 33 244444 44677788888877 46788889887755554322222222
Q ss_pred ---------------ChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 515 ---------------GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 515 ---------------~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
.+..|+.....|-+..+.|+++.|+...++.|+. .+||++|..-.
T Consensus 151 sp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~s 210 (299)
T PRK11865 151 SPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVLQ 210 (299)
T ss_pred CCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 1344444456677788999999999999999965 68999887643
No 184
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=91.03 E-value=6.2 Score=40.12 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=56.7
Q ss_pred CeEEEEec--HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCC-----------------------ChhhH-H
Q 007443 467 LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----------------------GAFDI-T 520 (603)
Q Consensus 467 ~~P~~~~~--~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~-----------------------~~~di-a 520 (603)
-+|++.+- ..|++..+..|.. ++..++|++++.-..+..|.-|.+++ ...|+ .
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~t-a~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALSG-AAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHHH-HHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 46777774 3355566677765 57889999998766554331111111 11233 2
Q ss_pred HHhcCCCcE---EEecCCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 521 FMSCLPNMI---VMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 521 ~lr~iPnl~---V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
+.+.+ |+. .+...++.|+..+++.++. .++|++|-..-
T Consensus 159 iA~a~-G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev~~ 199 (235)
T cd03376 159 IMAAH-NIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHILS 199 (235)
T ss_pred HHHHc-CCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 33333 443 4568999999999999975 58999886543
No 185
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=90.57 E-value=3.4 Score=39.78 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=64.3
Q ss_pred hCCCCee-ecchhhH-HHHHHHHHHhcCCCeEEEEecHH--hHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCC-CCC-
Q 007443 440 KFPERYF-DVGMAEQ-HAVTFSAGLACGGLKPFCIIPSA--FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG-PTQ- 513 (603)
Q Consensus 440 ~fp~R~i-d~GIaE~-~~vg~AaGlA~~G~~P~~~~~~~--Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG-~tH- 513 (603)
.-|.+++ +.|..-. ..++.|.|.++.--+|++.+..+ |+.-. ..+.. +...++|++++.-..+..|... ..|
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~-~eL~t-a~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDL-NGLLL-GKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhH-HHHHh-ccccCCCeEEEEEECCCCchheeccCC
Confidence 3477888 4443321 23455666555435667666444 54443 33444 4567899988765443222100 001
Q ss_pred ---------C---ChhhH-HHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 514 ---------C---GAFDI-TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 514 ---------~---~~~di-a~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
. ...|. .+.+.+ |+.-+.-.+++|++..++.++. .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 01122 333333 6667777899999999999965 688998743
No 186
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=90.56 E-value=7.5 Score=37.43 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=70.2
Q ss_pred hhHhCCCCeeecch-hhH-HHHHHHHHHhcCC-CeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC---
Q 007443 437 FQEKFPERYFDVGM-AEQ-HAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS--- 508 (603)
Q Consensus 437 f~~~fp~R~id~GI-aE~-~~vg~AaGlA~~G-~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~--- 508 (603)
+.-+.|.+++..+. .=. ..++.|.|.+... -++++.+ =..|++...+ +.+ +...++|++++.-..|..+.
T Consensus 36 ~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l~t-~~~~~lp~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 36 LRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-LIT-AVKYNLPVIVVVFNNSDLGFIKW 113 (178)
T ss_pred cccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-HHH-HHHhCCCcEEEEEECCchhHHHH
Confidence 44445778887543 221 2445556655543 2455555 5667765433 444 56789999887755542220
Q ss_pred -----CCC-CC--CChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 509 -----DGP-TQ--CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 509 -----dG~-tH--~~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
.++ .+ ....|+. +.+. -|++.+...++.|++..++.+.. .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev~ 171 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEA-MGIKGIRVEDPDELEAALDEALA-ADGPVVIDVV 171 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHH-CCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 11 1123443 4344 38888888999999999999965 5899988653
No 187
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=90.53 E-value=7.5 Score=37.57 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=68.0
Q ss_pred hCCCCeeecchh--hHHHHHHHHHHhcC-CCeEEEEecH--HhHHHHHHHHHHHhhcCCCCeEEEEe-CCCCCCC-----
Q 007443 440 KFPERYFDVGMA--EQHAVTFSAGLACG-GLKPFCIIPS--AFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGS----- 508 (603)
Q Consensus 440 ~fp~R~id~GIa--E~~~vg~AaGlA~~-G~~P~~~~~~--~Fl~ra~dQi~~~~a~~~lpV~~~~~-~~G~~g~----- 508 (603)
..|.||+..+-. =-..+..|.|.++. .-+|++.+.. .|+... ..+.. +...++|++++.- .+|+.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~-~eL~t-a~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS-QELET-AVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH-HHHHH-HHHHCCCeEEEEEECCcchHHHHHHH
Confidence 447888875431 12234456666654 3456666644 354443 33433 4667899988754 4444200
Q ss_pred --CCC-CCC--ChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 509 --DGP-TQC--GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 509 --dG~-tH~--~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
.+. .+. ...|.. +.+.. |++-+.-.+++|++..++.++. .++|++|-..-
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~~ 169 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALA-ADGVHVIDCPV 169 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 011 111 112433 33443 7777888999999999999965 58999986653
No 188
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.52 E-value=3.4 Score=46.92 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEecH-HhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC-CCCCCCCChhhHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPS-AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDIT 520 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~~~-~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g-~dG~tH~~~~dia 520 (603)
|++ ....|++++.+|.|.|+. |...+|...+ +=+..++.-|.. +...+.||+++........ ..+..++......
T Consensus 50 ~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~-A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~ 127 (530)
T PRK07092 50 RYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT-AFKNHTPLVITAGQQARSILPFEPFLAAVQAAE 127 (530)
T ss_pred CEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH-HhhcCCCEEEEecCCcccccCccchhcccCHHH
Confidence 455 678999999999999995 5444443333 334567766665 3568899998875444321 1233333345567
Q ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 521 FMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 521 ~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
+++.+-...... .++.++..+++.|+. ...||+||-+|+..
T Consensus 128 l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 128 LPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred hhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 788776655544 567776666665543 33589999999764
No 189
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=90.38 E-value=4.7 Score=39.09 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcc-hhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHH--hHHHH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLS-LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA--FLQRA 481 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~~~-l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~--Fl~ra 481 (603)
+++.+.|.+.+. +.+++ .|.+.... +-.+ ...|.+++..|.-= ..++.|.|+++...++++.+..+ |+..
T Consensus 2 ~~~~~~l~~~~~--~~~vv--~d~G~~~~~~~~~-~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~- 74 (179)
T cd03372 2 RDAIKTLIADLK--DELVV--SNIGFPSKELYAA-GDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMN- 74 (179)
T ss_pred HHHHHHHHHhCC--CCeEE--eCCCHhHHHHHHc-cCcccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhC-
Confidence 455566666665 34444 35443211 1111 12366776433221 22346677766543677777544 4322
Q ss_pred HHHHHHHhhcCC-CCeEEE-EeCCCCCCCCCCCCCC---hhhH-HHHhcCCCcEEEecC-CHHHHHHHHHHHHhCCCCcE
Q 007443 482 YDQVVNDVDQQR-LPVRFV-ITSAGLVGSDGPTQCG---AFDI-TFMSCLPNMIVMAPS-DEDELVDMVATVASIDDRPV 554 (603)
Q Consensus 482 ~dQi~~~~a~~~-lpV~~~-~~~~G~~g~dG~tH~~---~~di-a~lr~iPnl~V~~Ps-d~~e~~~~l~~a~~~~~~P~ 554 (603)
...+.. ++..+ .|++++ ....|+. ..+.++.. ..|. .+.+.. |+..+... +++|+...++.+. ++|+
T Consensus 75 ~~el~t-a~~~~~~~l~vvV~NN~~~~-~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~ 148 (179)
T cd03372 75 LGALAT-IAAEKPKNLIIVVLDNGAYG-STGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPS 148 (179)
T ss_pred HHHHHH-HHHcCCCCEEEEEEcCcccc-ccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCE
Confidence 223333 34444 456555 4554542 12222111 1122 233333 56666666 9999999999994 6899
Q ss_pred EEEee
Q 007443 555 CFRYP 559 (603)
Q Consensus 555 ~ir~~ 559 (603)
+|-..
T Consensus 149 lIev~ 153 (179)
T cd03372 149 FIHVK 153 (179)
T ss_pred EEEEE
Confidence 87554
No 190
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=90.33 E-value=5.2 Score=38.95 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhh-HhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHH--hHHHH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA--FLQRA 481 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~-~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~--Fl~ra 481 (603)
+++.++|.+.+. +.+++. |.+... ..-+. ...|.+++..|--=. .++.|.|+++.--+|++.+-.+ |+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 456667776663 445554 444221 11122 234778886432222 2346666665435667666444 54333
Q ss_pred HHHHHHHhhcCC-CCeEEEEeCCCCCCCCCC--CCC-ChhhH-HHHhcCCCcEEEe-cCCHHHHHHHHHHHHhCCCCcEE
Q 007443 482 YDQVVNDVDQQR-LPVRFVITSAGLVGSDGP--TQC-GAFDI-TFMSCLPNMIVMA-PSDEDELVDMVATVASIDDRPVC 555 (603)
Q Consensus 482 ~dQi~~~~a~~~-lpV~~~~~~~G~~g~dG~--tH~-~~~di-a~lr~iPnl~V~~-Psd~~e~~~~l~~a~~~~~~P~~ 555 (603)
..+.. ++..+ +|++++.-..+..|.-+. +.. ...|. .+.+.. |+.-+. ..+++|+...++ ++ ..++|++
T Consensus 76 -~el~t-a~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~-~~~~p~l 150 (181)
T TIGR03846 76 -GVLPT-IAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-AL-AMKGPTF 150 (181)
T ss_pred -hHHHH-HHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HH-cCCCCEE
Confidence 33333 35566 588887744433222221 111 12232 333333 555555 689999999997 74 4689999
Q ss_pred EEee
Q 007443 556 FRYP 559 (603)
Q Consensus 556 ir~~ 559 (603)
|-..
T Consensus 151 i~v~ 154 (181)
T TIGR03846 151 IHVK 154 (181)
T ss_pred EEEE
Confidence 8664
No 191
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=90.19 E-value=1.7 Score=49.66 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=81.2
Q ss_pred CCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC---CCCCCCCCC--Chh
Q 007443 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL---VGSDGPTQC--GAF 517 (603)
Q Consensus 443 ~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~---~g~dG~tH~--~~~ 517 (603)
+-|++-+..|--+..+|+|.+..|.+-++..=..=+.+|.|.+.+. ++.. .++|+ +|.|=.-|+ .-.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~G-------v~GGlviv~aDDpg~~SSqneq 129 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAG-------VTGGLVIVVADDPGMHSSQNEQ 129 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcC-------ccccEEEEEccCCCcccccchh
Confidence 7899999999999999999999999998876433357999999884 6644 23333 132222232 223
Q ss_pred hHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecC
Q 007443 518 DITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRG 561 (603)
Q Consensus 518 dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~ 561 (603)
|--++...-.+-|+.|+|++|+..+++.+++ ...-|+++|....
T Consensus 130 dsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr 176 (640)
T COG4231 130 DSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTR 176 (640)
T ss_pred HhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEee
Confidence 4445556678889999999999999998875 3456999988543
No 192
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=89.97 E-value=0.25 Score=55.71 Aligned_cols=63 Identities=25% Similarity=0.220 Sum_probs=52.1
Q ss_pred hccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccC
Q 007443 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377 (603)
Q Consensus 314 ~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~ 377 (603)
|++.+.-..+.|+++|+++++++++|..+...+.++++++.. +-|+++++.|.|+++|+..+.
T Consensus 230 k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~-~~P~~~~~v~~~~~~~p~~~~ 292 (632)
T KOG0523|consen 230 KGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIK-GLPVLIFVVPEKVKLYPEKPV 292 (632)
T ss_pred cCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhc-CCcceeEEeccccccCCCccc
Confidence 443333447889999999999999999999999998888863 339999999999999987754
No 193
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.92 E-value=3.7 Score=47.15 Aligned_cols=118 Identities=12% Similarity=0.010 Sum_probs=76.6
Q ss_pred CCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhH
Q 007443 442 PERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDI 519 (603)
Q Consensus 442 p~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~di 519 (603)
+=+++.+ ..|++++.+|.|.|+. |...+|.. +.+=+..++--|.+ +-..+.||+++.........+-..+|.....
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~-A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~ 130 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLAD-AMIDSLPLVVFTGQVATSVIGSDAFQEADIM 130 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-HhhcCCCEEEEeccCCccccCCCCccccchh
Confidence 4578866 9999999999999986 54444443 56555666666665 3557899999875433321111125556666
Q ss_pred HHHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 520 TFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 520 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
.+++.+--... ...++.++..+++.|+. ..+||++|-+|+..
T Consensus 131 ~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 131 GITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred hhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 77776654443 34566666666666543 23699999999754
No 194
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.41 E-value=2.5 Score=48.53 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCC
Q 007443 449 GMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLP 526 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iP 526 (603)
.-.|++++.+|.|.|+. |...+|.. +.+=+..+.--|.+. -..+.||++++.........-..+|......+++.+=
T Consensus 48 ~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~t 126 (574)
T PRK07979 48 VRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATA-YMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVV 126 (574)
T ss_pred eCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHH-hhcCCCEEEEECCCChhccCCCCCceecHHHHhhccc
Confidence 56799999999999974 76666655 777667777777653 4578999998755443211112355556667777654
Q ss_pred CcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 527 NMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 527 nl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
... ....+++++..+++.|+. ...||+||-+|+...
T Consensus 127 k~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 127 KHS-FLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred ceE-EEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 332 334578888877777653 246899999998653
No 195
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=89.29 E-value=3.8 Score=39.75 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred hCCCCeeecch-hh-HHHHHHHHHHhcCC-CeEEEEec--HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC-------
Q 007443 440 KFPERYFDVGM-AE-QHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG------- 507 (603)
Q Consensus 440 ~fp~R~id~GI-aE-~~~vg~AaGlA~~G-~~P~~~~~--~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g------- 507 (603)
..|.+|+..+- .= -..++.|.|.++.. -++++.+. ..|+... ..|.. ++..++|++++.-..+..+
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~-~eL~t-a~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNI-QELAT-AAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccH-HHHHH-HHHhCCCeEEEEEECCccHHHHHHHH
Confidence 34788887543 21 22455666666543 34555553 4465443 33544 4677899988765444321
Q ss_pred ----C-CCCCC-CChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 508 ----S-DGPTQ-CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 508 ----~-dG~tH-~~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
. ....+ ....|.. +.+.+ |+.-+.-.+..|+...++.+.. .++|++|-..
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 172 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDVL 172 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 0 01111 1223333 33443 6767777889999999999965 6889998554
No 196
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=89.21 E-value=1.9 Score=49.01 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=77.9
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++.+ ..|++++.+|.|.|+. |...+|.. +.+=+..++.-|.+ +...+.||+++..........-..||......+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT-ANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH-HhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 45544 4999999999999974 64444433 77767777777765 356889999987543332112234888888888
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
++.+--... ...++.++...++.|+ ...+|||||-+|+..
T Consensus 116 ~~~~tk~~~-~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 116 FRPITKYSA-EVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhcceeeee-ecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 887654333 3356777766665553 334689999999864
No 197
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=88.39 E-value=7.8 Score=44.68 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=74.3
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+. |...+|.+ +.+=+..+..-|.+. -..+.||+++..........-..+|......+++.+
T Consensus 48 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A-~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~ 126 (588)
T PRK07525 48 DVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATA-YWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDM 126 (588)
T ss_pred EecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHH-hhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhh
Confidence 467899999999999985 65555544 555455566666553 457899999984433321112247777777777765
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGAI 563 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~~ 563 (603)
=... +...++.++...++.|+. ...|||||-+|+...
T Consensus 127 tk~~-~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 127 TKYQ-EEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred eeEE-EECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 4433 444567666665555542 347899999998653
No 198
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=88.31 E-value=5.6 Score=37.60 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=39.2
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHH-HhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS-NAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln-~A~~~~~nlivIlndN~~s 255 (603)
.+.+|..= +.++.|.|+|+. | .+.+++.. ..+ -..+++.+. .++.++.|++++...-+.+
T Consensus 41 ~i~~gIaE~~~vg~A~GlA~~----G-~~pi~~~~--~~f-~~ra~dqi~~~~a~~~~pv~~~~~~~g~~ 102 (156)
T cd07033 41 FIDVGIAEQNMVGIAAGLALH----G-LKPFVSTF--SFF-LQRAYDQIRHDVALQNLPVKFVGTHAGIS 102 (156)
T ss_pred eEEeChhHHHHHHHHHHHHHC----C-CeEEEEEC--HHH-HHHHHHHHHHHHhccCCCeEEEEECCcEe
Confidence 35566533 334667777764 4 34455544 333 357889888 7778889999999977654
No 199
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=88.02 E-value=8.1 Score=40.91 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchh---hHHHHHHHHHHhcCC-CeEEEEe--c
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMA---EQHAVTFSAGLACGG-LKPFCII--P 474 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIa---E~~~vg~AaGlA~~G-~~P~~~~--~ 474 (603)
-....++.++|.++.-..+++ ++..|++-+... |. ++++.-- =...+.+|.|+++.. -++|+.+ =
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~-vivsdiG~s~~~-------~~-yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GD 97 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKV-VVVSGIGCSSKI-------PG-YFLSHGLHTLHGRAIAFATGAKLANPDLEVIVVGGD 97 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCE-EEEeCCcHhhhh-------hh-hcccCccchhhccHHHHHHHHHHHCCCCcEEEEeCc
Confidence 345566777776663223344 344466533211 11 3332110 022445666666542 3455555 3
Q ss_pred HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCC----CC----------CC----ChhhHHHHhcCCCcEEE---ec
Q 007443 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PT----------QC----GAFDITFMSCLPNMIVM---AP 533 (603)
Q Consensus 475 ~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG----~t----------H~----~~~dia~lr~iPnl~V~---~P 533 (603)
.+|+.-....+.+ ++..++|++++.-..+..|.-+ ++ .. ...|+.-+..--|...+ ..
T Consensus 98 G~~~~mg~~eL~t-A~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v 176 (301)
T PRK05778 98 GDLASIGGGHFIH-AGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFA 176 (301)
T ss_pred cHHHhccHHHHHH-HHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEecc
Confidence 3454455667776 4688999998775544322111 01 01 12344333333466654 68
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 534 SDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 534 sd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
.++.|+..+++.|+. .++|++|-.
T Consensus 177 ~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 177 GDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999999975 689998754
No 200
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=87.91 E-value=4 Score=46.66 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=75.0
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
..-.|++++.+|.|.|+. |...+|.+ +.+=+..+..-|.+. -..+.||+++.............+|......+++.+
T Consensus 44 ~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~ 122 (558)
T TIGR00118 44 LVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIATA-YMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPI 122 (558)
T ss_pred EeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-HhcCCCEEEEecCCCccccCCCCCcccChhhhhcCc
Confidence 457899999999999975 64444433 666566677776653 568999999875433321122236666666777765
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
=-.... ..++.++..+++.|+. ...|||||-+|+..
T Consensus 123 tk~~~~-v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 123 TKHSFQ-VKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred cceeEE-eCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 444333 3577888777777653 23689999999764
No 201
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=87.75 E-value=3.4 Score=43.27 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCcCcCchhhhH-HHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhh-hcCCCEEEEEECCCC
Q 007443 177 GYTSRSESEYDPFNAGHGCNSV-SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG-YLDSNMIVILNDSRH 254 (603)
Q Consensus 177 g~~~~~es~~d~~~~G~~G~~i-s~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nlivIlndN~~ 254 (603)
-||+| +|..|.+=|.+ +.|.|+|++ |+. ++ +.+=+.|..+-+||-+.+.. +.+.|+-+|.-+-+.
T Consensus 46 ~fPdR------~~NvGIaEQ~mvg~AAGLA~~----Gk~-Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~ 112 (312)
T COG3958 46 EFPDR------FFNVGIAEQDMVGTAAGLALA----GKK-PF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV 112 (312)
T ss_pred hCchh------heecchHHHHHHHHHHHHHhc----CCC-ce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc
Confidence 46776 57888876654 788888876 333 23 34667888899999998876 566999999999998
Q ss_pred Cc
Q 007443 255 SL 256 (603)
Q Consensus 255 si 256 (603)
+.
T Consensus 113 t~ 114 (312)
T COG3958 113 TY 114 (312)
T ss_pred cc
Confidence 74
No 202
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=87.23 E-value=6.7 Score=44.93 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=75.7
Q ss_pred CeeecchhhHHHHHHHHHHhcCCCeE-EEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~G~~P-~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. ...|++++.+|.|.|+..-+| +|. ++.+=+..++.-|.. +...+.||+++.........+-..+|.+....+
T Consensus 53 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 130 (564)
T PRK08155 53 RHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIAD-ARLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130 (564)
T ss_pred eEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHH-HHhcCCCEEEEeccCCcccccCCCccccchhhh
Confidence 5555 789999999999999963344 333 366656667777765 356899999987543332111223555555567
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+--...-. .+++++..+++.|+. ..+|||+|-+|+..
T Consensus 131 ~~~~tk~~~~v-~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 131 SIPITKHNYLV-RDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred hhccceEEEEc-CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77654443333 477777777666553 23699999999764
No 203
>PRK08617 acetolactate synthase; Reviewed
Probab=87.16 E-value=5.9 Score=45.21 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+. |...+|.. ..+=+..++.-+.+ +...+.||+++..........-..||.+....+++.+
T Consensus 47 ~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~-A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~ 125 (552)
T PRK08617 47 VTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVT-ATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPI 125 (552)
T ss_pred EeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHH-HhhcCCCEEEEecCCcccccCCCCccccchhhhhhhh
Confidence 457899999999999986 54444333 56555666666655 3568899999875433321111247777777788876
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
--.. +.-.++.++..+++.|+. ...|||+|-+|+..
T Consensus 126 tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 126 TKYS-AEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred cceE-EEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 5433 344567776666665543 34689999999764
No 204
>PLN02470 acetolactate synthase
Probab=86.88 E-value=11 Score=43.53 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=90.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHh
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAF 477 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~F 477 (603)
++..+++.+.|.++. -+.|+.+-.+- ...+ +.|.+.-.=|++.+ -.|++++.+|.|.|+. |...+|.+ +.+=
T Consensus 13 ~~~a~~l~~~L~~~G--V~~vFg~pG~~--~~~l~dal~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T PLN02470 13 RKGADILVEALEREG--VDTVFAYPGGA--SMEIHQALTRSNCIRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPG 87 (585)
T ss_pred ccHHHHHHHHHHHcC--CCEEEEcCCcc--cHHHHHHHhccCCceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 444555655555432 24455553321 1111 33322111356655 8899999999999985 65444433 6666
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCc
Q 007443 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRP 553 (603)
Q Consensus 478 l~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P 553 (603)
+..++.-|.+. -..+.||+++..........-..+|......+++.+=... +...+++++..+++.|+. ...||
T Consensus 88 ~~N~l~gia~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GP 165 (585)
T PLN02470 88 ATNLVTGLADA-LLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHN-YLVMDVEDIPRVIREAFFLASSGRPGP 165 (585)
T ss_pred HHHHHHHHHHH-HhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEE-EEcCCHHHHHHHHHHHHHHhcCCCCCe
Confidence 66777776653 4588999998754333211112355555666766543322 234578888887777753 24699
Q ss_pred EEEEeecCC
Q 007443 554 VCFRYPRGA 562 (603)
Q Consensus 554 ~~ir~~r~~ 562 (603)
|+|-+|...
T Consensus 166 V~l~iP~Dv 174 (585)
T PLN02470 166 VLVDIPKDI 174 (585)
T ss_pred EEEEecCch
Confidence 999999864
No 205
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.68 E-value=16 Score=42.21 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PS 475 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l---~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~ 475 (603)
++..+++.+.|.+.. -+.|+.+- ++..+ +.+.+.-.=|++.+ ..|++++.+|.|.|+. |...+|.. +.
T Consensus 21 ~~~a~~l~~~L~~~G--V~~vFgvp----G~~~~~l~dal~~~~~i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~G 93 (587)
T PRK06965 21 SIGAEILMKALAAEG--VEFIWGYP----GGAVLYIYDELYKQDKIQHVLV-RHEQAAVHAADGYARATGKVGVALVTSG 93 (587)
T ss_pred ccHHHHHHHHHHHcC--CCEEEecC----CcchHHHHHHHhhcCCCeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 445566665555432 23455442 22222 33422111345554 7999999999999986 64444444 66
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH----hCCC
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA----SIDD 551 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~ 551 (603)
+=+..+..-|.+ +...+.||+++..........-..+|......+++.+=-.. ....++.++..+++.|+ ....
T Consensus 94 pG~~N~l~gl~~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~~ 171 (587)
T PRK06965 94 PGVTNAVTGIAT-AYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHN-FLVKDVRDLAETVKKAFYIARTGRP 171 (587)
T ss_pred ccHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCccee-EEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 655667766665 35689999999855444211111355555556666654333 33445565555554443 3346
Q ss_pred CcEEEEeecCC
Q 007443 552 RPVCFRYPRGA 562 (603)
Q Consensus 552 ~P~~ir~~r~~ 562 (603)
|||||-+|+..
T Consensus 172 GPV~l~iP~Dv 182 (587)
T PRK06965 172 GPVVVDIPKDV 182 (587)
T ss_pred CeEEEEeChhh
Confidence 89999999864
No 206
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.47 E-value=14 Score=42.75 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=74.8
Q ss_pred CeeecchhhHHHHHHHHHHhc-CCCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLAC-GGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~-~G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++.+ ..|++++.+|.|.|+ .|...+|.+ +.+=+..+.--|.+ +-..+.||+++..........-..+|.+....+
T Consensus 51 ~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l 128 (595)
T PRK09107 51 QHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQD-ALMDSIPLVCITGQVPTHLIGSDAFQECDTVGI 128 (595)
T ss_pred eEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHH-HhhcCCCEEEEEcCCChhhcCCCCCcccchhhh
Confidence 55554 899999999999997 475555544 66655666666655 345789999987543332111124665655566
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=-+. +...++.++..+++.|+. ...|||||-+|+..
T Consensus 129 ~~~vtk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 129 TRPCTKHN-WLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhheEEE-EEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 66443222 334577777777766643 24689999999865
No 207
>PRK08611 pyruvate oxidase; Provisional
Probab=86.15 E-value=11 Score=43.30 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=74.9
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. ...|++++.+|.|.|+. |..-+|.. +.+=+..++--|.+ +...+.||+++..........-..+|.+....+
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~-A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYD-AKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHH-HhhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 4444 78899999999999975 54433333 56555667777665 356889999998554442111223555566677
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (603)
++.+--+. ....+++++..+++.|+. ...|||+|-+|...
T Consensus 123 ~~~itk~~-~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 123 FEDVAVYN-HQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred hhccccee-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 78664433 345567777666655432 24699999999865
No 208
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=86.06 E-value=4.5 Score=46.15 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=75.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+. |...+|.. +.+=+..++--+.+. -..+.||+++..........-..+|......+++.+
T Consensus 43 ~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~ 121 (548)
T PRK08978 43 LCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADA-LLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLAC 121 (548)
T ss_pred EeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCCCcccchhccccCc
Confidence 348999999999999985 64444443 666566677777653 568899999975544321111236666666777766
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
--..... .++.++..+++.|+. ..+|||+|-+|+..
T Consensus 122 tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 122 TKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred eeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 5554444 477777777776653 23589999999864
No 209
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=85.95 E-value=5.7 Score=43.21 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcE
Q 007443 450 MAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMI 529 (603)
Q Consensus 450 IaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~ 529 (603)
=+|.+.++++.|.+..|-+.+..+-+.=+..+.+.+-. ++.+.+|+++....-++....-+++..-.|+...|.. ++.
T Consensus 54 EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l~~-a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~ 131 (365)
T COG0674 54 ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEALGL-AAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFP 131 (365)
T ss_pred ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHHHH-HHhccCCeEEEEeccCcCCCcccccccHHHHHHHHcc-Cce
Confidence 47999999999999999999999977656677777766 5789999999775555533345689888998888875 888
Q ss_pred EEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 007443 530 VMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 530 V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
+++=+|.+|+..+...|.. ...-|+++.+
T Consensus 132 ~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~ 163 (365)
T COG0674 132 ILVSASVQEAFDLTLLAFNIAEKVLTPVIVLL 163 (365)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHhcCCEEEee
Confidence 8887899988875554432 2345877764
No 210
>PRK06163 hypothetical protein; Provisional
Probab=85.71 E-value=21 Score=35.49 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCC-cchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEecHH--hHHH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMD-LSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSA--FLQR 480 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~-~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~~~~--Fl~r 480 (603)
+.+-+.|.+.+.. +.+++ .|.+.. +.+-.. ...|.+++..| +=...+.+|.|+++.. -++++.+..+ |++.
T Consensus 16 ~~~i~~l~~~l~~-~~~iv--~D~G~~~~~~~~~-~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~ 90 (202)
T PRK06163 16 FDLTCRLVAKLKD-EEAVI--GGIGNTNFDLWAA-GQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQ 90 (202)
T ss_pred HHHHHHHHHhcCC-CCEEE--ECCCccHHHHHHh-hcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHH
Confidence 3344555555543 34544 365431 112111 23477777432 1122233566666543 3556666444 5444
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCC-CCCCCCCCC--CCChhhHH-HHhcCCCcE-EEecCCHHHHHHHHHHHHhCCCCcEE
Q 007443 481 AYDQVVNDVDQQRLPVRFVITSA-GLVGSDGPT--QCGAFDIT-FMSCLPNMI-VMAPSDEDELVDMVATVASIDDRPVC 555 (603)
Q Consensus 481 a~dQi~~~~a~~~lpV~~~~~~~-G~~g~dG~t--H~~~~dia-~lr~iPnl~-V~~Psd~~e~~~~l~~a~~~~~~P~~ 555 (603)
. ..+...+.+.++|++++.-.. |+.-..+.. +....|.. +.+.. |+. -+.-.+..|+..+++.++. .++|++
T Consensus 91 ~-~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~l 167 (202)
T PRK06163 91 L-GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSF 167 (202)
T ss_pred H-HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEE
Confidence 3 233332334567877766544 442111111 11223433 33443 665 4566899999999999965 589998
Q ss_pred EEee
Q 007443 556 FRYP 559 (603)
Q Consensus 556 ir~~ 559 (603)
|-..
T Consensus 168 IeV~ 171 (202)
T PRK06163 168 IAVR 171 (202)
T ss_pred EEEE
Confidence 8664
No 211
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=85.70 E-value=5.2 Score=45.76 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC-CCCCCCCCChhhHHHHhc
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV-GSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~-g~dG~tH~~~~dia~lr~ 524 (603)
....|++++.+|.|.|+. |...+|.. +.+=+..++--|.+. -..+.||+++....... -..+ .+|.+....+++.
T Consensus 51 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~A-~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~l~~~ 128 (557)
T PRK08199 51 VCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHTA-FQDSTPMILFVGQVARDFRERE-AFQEIDYRRMFGP 128 (557)
T ss_pred EeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHH-hhcCCCEEEEecCCccccCCCC-cccccCHHHhhhh
Confidence 456899999999999986 54444433 677677777777663 56899999987543332 1122 3566666777776
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
+=...... .++.++..+++.|+. ..+|||+|-+|+...
T Consensus 129 ~tk~~~~v-~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~ 170 (557)
T PRK08199 129 MAKWVAEI-DDAARIPELVSRAFHVATSGRPGPVVLALPEDVL 170 (557)
T ss_pred hhceeeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 55444333 577777666665543 346899999997653
No 212
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.68 E-value=12 Score=39.12 Aligned_cols=152 Identities=9% Similarity=0.122 Sum_probs=83.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEe--cHH
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCII--PSA 476 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~--~~~ 476 (603)
.-+...++.+++.++.-..++.+++ .|++....+..+.+ +. .+.+. =...+.+|.|+.+.. -+|++.+ =.+
T Consensus 16 ~~~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~ 89 (280)
T PRK11869 16 NFGIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGD 89 (280)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchH
Confidence 3456678888887664444454444 55543221211110 11 12211 122445566665544 3566665 344
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEeCCCC---CC-CCCCC--------------CCChhhHHHHhcCCCcEEEe---cCC
Q 007443 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGL---VG-SDGPT--------------QCGAFDITFMSCLPNMIVMA---PSD 535 (603)
Q Consensus 477 Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~---~g-~dG~t--------------H~~~~dia~lr~iPnl~V~~---Psd 535 (603)
|+.-++..+.+ ++..++||++++-..+. ++ ..-++ -....|+.-+..--|...++ +.+
T Consensus 90 ~~~iG~~eL~t-A~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~ 168 (280)
T PRK11869 90 MYAEGGNHLIH-AIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGD 168 (280)
T ss_pred HhhCcHHHHHH-HHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCC
Confidence 55555777777 47789999988755433 21 11100 01112333333333555555 999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEee
Q 007443 536 EDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 536 ~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+.|++.+++.|+. .++|++|-.-
T Consensus 169 ~~~l~~~i~~Al~-~~Gp~lIeV~ 191 (280)
T PRK11869 169 IEETKEILKEAIK-HKGLAIVDIF 191 (280)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEE
Confidence 9999999999975 6899988553
No 213
>PRK05858 hypothetical protein; Provisional
Probab=85.67 E-value=6.4 Score=44.86 Aligned_cols=113 Identities=11% Similarity=0.041 Sum_probs=73.7
Q ss_pred cchhhHHHHHHHHHHhcCCCeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~G~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+..-+|-+.+ ..+=+..+.--|.+ +...+.||+++.........+-..+|......+++.+
T Consensus 47 ~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~ 125 (542)
T PRK05858 47 DVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA-AQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPV 125 (542)
T ss_pred eeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH-HHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhh
Confidence 45789999999999999743433332 44445566666655 3568999998875443321122346666666777776
Q ss_pred CCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
--.. ....++.++...++.|+ ....|||+|-+|+..
T Consensus 126 tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 126 TKFA-ATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred hceE-EEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 5433 44466777776666554 234689999999865
No 214
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=85.59 E-value=5.4 Score=45.75 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=74.8
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++ ....|++++.+|.|.|+. |...+|.+ +.+=+..+..-|.. +-..+.||+++..........-..+|......+
T Consensus 50 ~~i-~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 127 (566)
T PRK07282 50 RHI-LARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIAD-AMSDSVPLLVFTGQVARAGIGKDAFQEADIVGI 127 (566)
T ss_pred eEE-EecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-HhhcCCCEEEEecccccccCCCCCccccChhch
Confidence 443 457899999999999985 65554444 66545666666655 345789999998554432111123555566667
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=.... ...++.++..+++.|+. ..+|||||-+|+..
T Consensus 128 ~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 128 TMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred hcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 776544443 33567777776666653 23699999999864
No 215
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.49 E-value=3.4 Score=47.41 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=89.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEE-ecHH
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSA 476 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~ 476 (603)
++++..+++.+.|.+.. -+.|+.+ ... ..-...+.+. .=|++.+ ..|++++.+|.|.|+. |.-.+|. +..+
T Consensus 12 ~~~~~a~~i~~~L~~~G--V~~vFG~--~~~-~~~~~~~~~~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~Gp 84 (578)
T PRK06112 12 LNGTVAHAIARALKRHG--VEQIFGQ--SLP-SALFLAAEAI-GIRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGP 84 (578)
T ss_pred cCcCHHHHHHHHHHHCC--CCEEeec--ccc-hHhHHHHhhc-CCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 34566677766666532 2334432 111 1001122211 2344444 4999999999999985 5433333 3666
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH----hCCCC
Q 007443 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA----SIDDR 552 (603)
Q Consensus 477 Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~ 552 (603)
-+..++--|.+ +...+.||+++.........+-..+|.+....+++.+--.. ....+++++...++.|+ ....|
T Consensus 85 G~~N~~~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~-~~v~~~~~~~~~i~~A~~~A~~~~~G 162 (578)
T PRK06112 85 AATLLVAPLAE-ALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWV-RRVTVAERIDDYVDQAFTAATSGRPG 162 (578)
T ss_pred cHHHHHHHHHH-HhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceE-EEeCCHHHHHHHHHHHHHHHhhCCCC
Confidence 66777777765 35689999998754433222223466666667777664432 24456666666555554 33468
Q ss_pred cEEEEeecCC
Q 007443 553 PVCFRYPRGA 562 (603)
Q Consensus 553 P~~ir~~r~~ 562 (603)
|++|-+|...
T Consensus 163 Pv~l~iP~Dv 172 (578)
T PRK06112 163 PVVLLLPADL 172 (578)
T ss_pred cEEEEcCHhH
Confidence 9999999764
No 216
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=85.28 E-value=5.8 Score=45.50 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=75.4
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~l 522 (603)
=....|++++.+|.|.|+. |...+|. ++.+=+..++.-|.+. -..+.||+++....... +.+ .+|......++
T Consensus 47 i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A-~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~~i~ 123 (572)
T PRK06456 47 VLMRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITA-YWDSSPVIAITGQVPRSVMGKM--AFQEADAMGVF 123 (572)
T ss_pred EEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHH-HhhCCCEEEEecCCCccccCCC--Cccccchhhhh
Confidence 3567899999999999985 6554544 3777677777777663 56889999987544332 322 24555556777
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
+.+--...-. .+++++...++.|+ ....||++|-+|+..
T Consensus 124 ~~~tk~~~~v-~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 124 ENVTKYVIGI-KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred hccceeEEEe-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 7665444333 57777766666654 235699999999754
No 217
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=84.81 E-value=9.5 Score=47.68 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcE
Q 007443 450 MAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMI 529 (603)
Q Consensus 450 IaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~ 529 (603)
=+|.++++++.|.+..|.+.+..+-+.=+..+.+.+.. ++-..+|+++...--++.+.....|..--|+..+|. -|+.
T Consensus 58 EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~~-~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R~-~G~i 135 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMYK-IAGELLPCVFHVSARAIAAHALSIFGDHQDVMAARQ-TGFA 135 (1165)
T ss_pred cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHHH-HHhccCCEEEEEecCCCCCCCCccCCCchHHHHhhc-CCeE
Confidence 38999999999999999988887754444555677743 344589999876543332212344544555555565 5889
Q ss_pred EEecCCHHHHHHHHHHHH---hCCCCcEEEEee
Q 007443 530 VMAPSDEDELVDMVATVA---SIDDRPVCFRYP 559 (603)
Q Consensus 530 V~~Psd~~e~~~~l~~a~---~~~~~P~~ir~~ 559 (603)
|++|++.+|+..+...|. .+...|+++.+.
T Consensus 136 vl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 136 MLASSSVQEVMDLALVAHLATIEARVPFMHFFD 168 (1165)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 999999999988766553 235679988775
No 218
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=84.80 E-value=6.6 Score=36.22 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCeEEEEE-cCCccccchHHHHHHHhhhcCCCEEEEEECCCC
Q 007443 195 CNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 195 G~~is~A~G~A~A~~l~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nlivIlndN~~ 254 (603)
..+..+|.|++.+ +. ..++.+. |.|.. ..++++..|...+.|+++|..+...
T Consensus 45 ~~a~~~A~G~a~~----~~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 45 LGAAGAAAGYARA----GG-PPVVIVTSGTGLL---NAINGLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred HHHHHHHHHHHHh----hC-CEEEEEcCCCcHH---HHHHHHHHHHhcCCCEEEEeCCCCh
Confidence 3455667777776 33 3344444 78865 4668888888888999999987764
No 219
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=84.59 E-value=9.6 Score=36.33 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=71.5
Q ss_pred CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCC---
Q 007443 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQC--- 514 (603)
Q Consensus 442 p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~--- 514 (603)
++--+-....|++++.+|.|.|+.- +|-+.+ ..+=+..+..-|.+. ...+.||+++....... +.....|+
T Consensus 34 ~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A-~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 111 (162)
T cd07038 34 PGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGA-YAEHVPVVHIVGAPSTKAQASGLLLHHTLG 111 (162)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHH-HHcCCCEEEEecCCCccccccccceeeccc
Confidence 3333456789999999999999875 344333 445456777777664 56789999987543321 22222332
Q ss_pred --Chh-hHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 515 --GAF-DITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 515 --~~~-dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
..+ ...+++.+=.+.. ...+++++..+++.|+. ...+|++|-+||
T Consensus 112 ~~~~~d~~~~~~~~tk~~~-~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 112 DGDFDVFLKMFEEITCAAA-RLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred ccchHHHHHHHHhheeEEE-EeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 223 3677775544333 33566666666665543 235899998876
No 220
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=84.57 E-value=21 Score=34.07 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=63.5
Q ss_pred hCCCCeeecchhhH-HHHHHHHHHhcCC-CeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCC-CC--C-----
Q 007443 440 KFPERYFDVGMAEQ-HAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAG-LV--G----- 507 (603)
Q Consensus 440 ~fp~R~id~GIaE~-~~vg~AaGlA~~G-~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G-~~--g----- 507 (603)
+.|.+++..+-.=. ..+..|.|.++.- -++++.+ =..|+.-. ..+.. +...++|++++....+ +. .
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el~t-a~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QALWT-AARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHHHH-HHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 34788887633111 1244566665542 3445544 45565333 34444 4567899988765543 31 0
Q ss_pred --CC--------CC-CCCChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 508 --SD--------GP-TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 508 --~d--------G~-tH~~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
.+ +. ......|+. +.+.. |+..+.-.++.|++..++.+.. .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 001113333 33333 6666777889999999999965 578988743
No 221
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=84.50 E-value=15 Score=38.65 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecc-h--hhHHHHHHHHHHhcCC-CeEEEEecHH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVG-M--AEQHAVTFSAGLACGG-LKPFCIIPSA 476 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~G-I--aE~~~vg~AaGlA~~G-~~P~~~~~~~ 476 (603)
.....++.++|.++....++.+++ .|++-+... | ++++++ + .=...+++|.|+++.. -++++.+-.+
T Consensus 26 ~~il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GD 96 (286)
T PRK11867 26 GSILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGD 96 (286)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCc
Confidence 345677777776665444454444 565533211 1 344432 1 1133455666666542 3455555333
Q ss_pred --hHHHHHHHHHHHhhcCCCCeEEEEeCCCCC---C-CCCC----------CCCCh----hhH-HHHhcCCC--cEEEec
Q 007443 477 --FLQRAYDQVVNDVDQQRLPVRFVITSAGLV---G-SDGP----------TQCGA----FDI-TFMSCLPN--MIVMAP 533 (603)
Q Consensus 477 --Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~---g-~dG~----------tH~~~----~di-a~lr~iPn--l~V~~P 533 (603)
+++-....+.+ ++..++|++++.-..+.. + ...+ +..+. .|. ++...... ......
T Consensus 97 G~~f~mg~~eL~t-A~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~ 175 (286)
T PRK11867 97 GDALAIGGNHFIH-ALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFD 175 (286)
T ss_pred cHHHhCCHHHHHH-HHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecC
Confidence 34455566666 467889998877554332 1 1111 10111 222 33333322 222357
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 534 SDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 534 sd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
.++.|+..+++.|+. .++|++|-.-.
T Consensus 176 ~~~~el~~al~~Al~-~~Gp~lIev~~ 201 (286)
T PRK11867 176 SDVKQLTELIKAAIN-HKGFSFVEILQ 201 (286)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 899999999999975 58999886543
No 222
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=84.50 E-value=16 Score=36.07 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred hCCCCeeecch-hh-HHHHHHHHHHhcCC-CeEEEEec--HHhHHHHHHHHHHHhhcCCCCeEEEEeC-CCCC-------
Q 007443 440 KFPERYFDVGM-AE-QHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITS-AGLV------- 506 (603)
Q Consensus 440 ~fp~R~id~GI-aE-~~~vg~AaGlA~~G-~~P~~~~~--~~Fl~ra~dQi~~~~a~~~lpV~~~~~~-~G~~------- 506 (603)
+.|.+|+..+- .= -..++.|.|.++.. -+|++.+- ..|+... ..+.. +...++|++++... .|+.
T Consensus 36 ~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~-~eL~T-a~~~~lpv~ivV~NN~~~g~~~~~q~ 113 (205)
T cd02003 36 RTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH-SEIVT-AVQEGLKIIIVLFDNHGFGCINNLQE 113 (205)
T ss_pred CCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH-HHHHH-HHHcCCCCEEEEEECCccHHHHHHHH
Confidence 44888886532 11 12334556655543 35555553 4465432 23333 46678898776644 4431
Q ss_pred --CC--CCCCCC-------------ChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 507 --GS--DGPTQC-------------GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 507 --g~--dG~tH~-------------~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
+. .+.... ...|.. +.+.. |+..+.-.+++|++.+++.++. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 114 STGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 010000 112333 33333 7777777999999999999964 689988754
No 223
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=84.44 E-value=9 Score=44.05 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+. |...+|.. ..+=+..+.--|.+ +...+.||+++....+........||......+++.+
T Consensus 44 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~-A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~v 122 (579)
T TIGR03457 44 PVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA-AYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEF 122 (579)
T ss_pred EeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH-HhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcc
Confidence 456899999999999975 65555544 56545566666655 3557899999975444322122347777667777765
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGAI 563 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~~ 563 (603)
=-.. ....++.++...++.|+. ...|||||-+|+...
T Consensus 123 tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 123 TKYQ-GHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred eeEE-EecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 4332 333566666665555432 245899999998654
No 224
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=84.25 E-value=5.5 Score=45.46 Aligned_cols=114 Identities=7% Similarity=-0.115 Sum_probs=72.6
Q ss_pred ecchhhHHHHHHHHHHhcCCCeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 447 DVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~G~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
=....|++++.+|.|.|+.--+|-+.+ ..+=+..++--+.+ +-..+.||+++..........-.++|......+++.
T Consensus 43 v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~ 121 (549)
T PRK06457 43 VQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD-AKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDD 121 (549)
T ss_pred EEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH-HHhcCCCEEEEecCCCccccCCCcccccchhhhhcc
Confidence 356789999999999999644443333 55545666666655 356889999887543322112224566666677776
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (603)
+--.. ....++.++..+++.|+. ...|||+|-+|...
T Consensus 122 vtk~~-~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 122 VAVFN-QILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred ceeEE-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 54432 344566666666555532 24699999999765
No 225
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=83.95 E-value=8.2 Score=44.76 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=76.0
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
+++. ...|++++.+|.|.|+. |...+|.. ..+=+..++--|.+ +-..+.||++++.........-..+|......+
T Consensus 71 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l 148 (612)
T PRK07789 71 RHVL-VRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD-ANMDSVPVVAITGQVGRGLIGTDAFQEADIVGI 148 (612)
T ss_pred eEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCcCcccchhhh
Confidence 4444 48999999999999985 65444433 55555666666665 356889999988554432111223565666677
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+--.. +...++.++..+++.|+. ...|||+|-+|+..
T Consensus 149 ~~~~tk~s-~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 149 TMPITKHN-FLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred hhcceeEE-EEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 76554332 334678887777776653 23689999999864
No 226
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=83.55 E-value=26 Score=36.62 Aligned_cols=147 Identities=13% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhC-CCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe--cHHhHHH
Q 007443 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCII--PSAFLQR 480 (603)
Q Consensus 405 ~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~--~~~Fl~r 480 (603)
..+.++|.+..-..+++++ ..|++-. ..+..-+ ++++. +.. ...+.+|.|+++. --++++.+ =.+|+.-
T Consensus 29 ~~v~~al~e~~~~~~d~iv-vsdiGc~---~~~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~ 101 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCV-VSGIGCS---GRFSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHHhcCCCCCEEE-EeCcCHH---HHhhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHh
Confidence 4455666665433344443 3565532 1111112 33333 222 2556677776664 22455555 3446443
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--------------C----ChhhHHHHhcCCCcEE---EecCCHHHH
Q 007443 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--------------C----GAFDITFMSCLPNMIV---MAPSDEDEL 539 (603)
Q Consensus 481 a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--------------~----~~~dia~lr~iPnl~V---~~Psd~~e~ 539 (603)
....+.+ ++..++||+++.-..+..|--+.+. . ..+|+.-+..-=|..- ....++.|+
T Consensus 102 g~~el~t-a~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 GGNHTIH-GCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred hHHHHHH-HHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 3233333 5788999999876554432211000 0 1123332222225543 478999999
Q ss_pred HHHHHHHHhCCCCcEEEEeec
Q 007443 540 VDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~r 560 (603)
+.+++.|+. .++|++|-...
T Consensus 181 ~~al~~Al~-~~Gp~lIeV~~ 200 (277)
T PRK09628 181 EKLLVKGFS-HKGFSFFDVFS 200 (277)
T ss_pred HHHHHHHHh-CCCCEEEEEcC
Confidence 999999975 68999886543
No 227
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.47 E-value=5.5 Score=45.77 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=75.1
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
..-.|++++.+|.|.|+. |...+|.. +.+=+..+..-|.+. -..+.||+++..........-..||......+++.+
T Consensus 47 ~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~i 125 (574)
T PRK06466 47 LVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATA-YMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPI 125 (574)
T ss_pred EeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH-HhcCCCEEEEecCCCccccCCCcccccchhhhhhcc
Confidence 458999999999999985 54444433 666556677776653 568899999975444321111236766666777776
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
--.. ....++.++..+++.|+. ..+||+|+-+|+..
T Consensus 126 tk~s-~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 126 VKHS-FMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred ceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 5543 344567777776665542 23699999999874
No 228
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=83.46 E-value=10 Score=43.76 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHhcC--CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 449 GMAEQHAVTFSAGLACG--GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~--G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
.--|++++.+|.|.|+. |..-+|.. +.+=+..+.--|.+ +...+.||+++.............+|......+++.+
T Consensus 47 ~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~-A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~v 125 (588)
T TIGR01504 47 ARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS-ASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPV 125 (588)
T ss_pred eCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhh
Confidence 56699999999999985 43444333 55544566666655 3568899999975444321112236665566777765
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
=-+. +...++.++..+++.|+. ..+|||+|-+|+...
T Consensus 126 tk~~-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 126 SKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred ceEE-EEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 4333 334578887777777754 345899999998653
No 229
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=83.45 E-value=18 Score=34.48 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=37.8
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhh-hcCCCEEEEEECCCC
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG-YLDSNMIVILNDSRH 254 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nlivIlndN~~ 254 (603)
.-+=+.+.+.|.|.+++ .+..++|+-+=|- |...-+|..|. ....|+++|+-+-+.
T Consensus 40 ~~~ee~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~ 96 (157)
T TIGR03845 40 LTREEEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGV 96 (157)
T ss_pred cCChHHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCC
Confidence 44456677777777744 3445677777772 35566777777 667999999965553
No 230
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=83.27 E-value=11 Score=43.62 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
||+.+ -.|+.++.+|.|.|+. |...+|.. ..+=+..++.-|.. +...+.||+++..........-..+|......+
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~-A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~ 139 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIAT-AQMDSVPMVVITGQVPRPAIGTDAFQETDIFGI 139 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-HHhcCCCEEEEecCCCccccCCCCcccccHHHH
Confidence 56666 8999999999999985 65544443 56655566666654 356889999987544432111223555555566
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+--.. ....+++++..+++.|+. ...||+++-+|+..
T Consensus 140 ~~~vtk~~-~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 140 TLPIVKHS-YVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred hhhcceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 66543222 335677777776666543 34599999999754
No 231
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=83.27 E-value=18 Score=37.56 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=41.2
Q ss_pred cCchhhhHHHHHHHHHHH--HH-cCC-C---CeEEEEEcCCc--cccchHHHHHHHhhhcCCCEEEEEECCC
Q 007443 191 AGHGCNSVSAGLGMAVAR--DI-KGK-R---ECIVTVISNGT--TMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~--~l-~g~-~---~~Vv~viGDGa--l~eG~~~EAln~A~~~~~nlivIlndN~ 253 (603)
.+.-||.++.++-.|... .. .+. . ..++.++.||+ .++|..-+++..|...+-.++||+-||.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 334456666666555431 11 011 1 27999999999 8899887778888887866777766664
No 232
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=83.13 E-value=12 Score=36.04 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEE
Q 007443 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (603)
Q Consensus 329 G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~ 363 (603)
|+.++.|. |..+....++.+.+. ++|+++.
T Consensus 135 g~~V~~Ps---d~~e~~~~l~~~~~~--~~P~~~~ 164 (167)
T cd07036 135 GLKVVAPS---TPYDAKGLLKAAIRD--DDPVIFL 164 (167)
T ss_pred CCEEEeeC---CHHHHHHHHHHHHhC--CCcEEEE
Confidence 78888555 677777778888776 7999985
No 233
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=83.12 E-value=33 Score=33.65 Aligned_cols=102 Identities=6% Similarity=0.134 Sum_probs=57.5
Q ss_pred HHHHHHHhcC-CCeEEEEecHH--hHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--------------CC---
Q 007443 456 VTFSAGLACG-GLKPFCIIPSA--FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--------------CG--- 515 (603)
Q Consensus 456 vg~AaGlA~~-G~~P~~~~~~~--Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--------------~~--- 515 (603)
++.|.|.++. .-++++.+..+ |++-....+.. +...++||+++.-..+..|.-+.+. +.
T Consensus 57 lpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL~t-a~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 57 LAVATGVKLANPDLTVIVVSGDGDLAAIGGNHFIH-AARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHHhCCCCeEEEEeccchHhhccHHHHHH-HHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCC
Confidence 3466666654 24566666433 43444455555 3567899997665443322111110 00
Q ss_pred -hhhH-HHHhcCCCcEE---EecCCHHHHHHHHHHHHhCCCCcEEEEeec
Q 007443 516 -AFDI-TFMSCLPNMIV---MAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 516 -~~di-a~lr~iPnl~V---~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
..|. .+.+.+ |..- +...++.|++..++.++. .++|++|-...
T Consensus 136 ~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev~~ 183 (193)
T cd03375 136 EPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEVLS 183 (193)
T ss_pred CCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEEEC
Confidence 0122 233333 3333 468999999999999975 68999886643
No 234
>PRK07524 hypothetical protein; Provisional
Probab=83.07 E-value=11 Score=42.72 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCC-CCCCCChhhHHHH
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSD-GPTQCGAFDITFM 522 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~d-G~tH~~~~dia~l 522 (603)
..-.|++++.+|.|.|+. |...+|.. ..+=+..+.--|.+ +...+.||+++....... +.+ +..|+......++
T Consensus 44 ~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~ 122 (535)
T PRK07524 44 TPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ-AYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMV 122 (535)
T ss_pred EeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-HHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHh
Confidence 457899999999999985 54445443 55545666666665 356899999987543331 322 3445544566777
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
+.+=- -.+...++.++...++.|+. ...|||||-+|+..
T Consensus 123 ~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 123 AGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred hhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 76543 33555677777777766653 34689999999865
No 235
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.83 E-value=8.8 Score=44.14 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=75.4
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. .-.|++++.+|.|.|+. |...+|.. +.+=+..+..-|.+. -..+.||++++.........-..+|......+
T Consensus 54 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 131 (570)
T PRK06725 54 KHIL-TRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLADA-YMDSIPLVVITGQVATPLIGKDGFQEADVVGI 131 (570)
T ss_pred cEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-hhcCcCEEEEecCCCcccccCCCCcccchhhh
Confidence 4444 56899999999999985 65444443 666556666666553 45789999887543332111113555555566
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
++.+=-+. +...+++++..+++.|+. ..+|||||-+|+...
T Consensus 132 ~~~itk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 132 TVPVTKHN-YQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred hhccceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 66554333 344678888887777653 246999999998653
No 236
>PRK08322 acetolactate synthase; Reviewed
Probab=82.71 E-value=7.8 Score=44.10 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=74.2
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~l 522 (603)
=....|++++.+|.|.|+. |...+|.. ..+=+..++--|.+ +-..+.||+++....... +. + .||......++
T Consensus 42 i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~-A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d~~~~~ 118 (547)
T PRK08322 42 ILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY-AQLGGMPMVAITGQKPIKRSKQ-G-SFQIVDVVAMM 118 (547)
T ss_pred EEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH-HhhcCCCEEEEeccccccccCC-C-ccccccHHHHh
Confidence 3567999999999999986 54444433 55555667777665 356899999887443321 22 2 35555555777
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
+.+-.. .+...+++++..+++.|+. ...|||+|-+|+...
T Consensus 119 ~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (547)
T PRK08322 119 APLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA 162 (547)
T ss_pred hhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 755432 3455677777776665543 346899999998653
No 237
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.70 E-value=8.6 Score=44.06 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=76.8
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
=....|++++.+|.|.|+. |...+|.. +.+=+..+..-|.+ +-..+.||++++.........-..+|.+...++++.
T Consensus 45 v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~ 123 (563)
T PRK08527 45 ILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLAT-AYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRP 123 (563)
T ss_pred EEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCCCcccchhhhhhc
Confidence 3567999999999999974 65444443 66655667777665 356889999987544332111123666666677776
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
+=-.. ....+++++..+++.|+. ..+|||||-+|...
T Consensus 124 ~tk~s-~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 124 CVKHN-YLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred ccceE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 54333 345788888888877654 24589999999754
No 238
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=82.27 E-value=4.7 Score=39.76 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcc--hhhhhHhCCCCeeecch-hhHH-HHHHHHHHhcCC-CeEEEEec--HHhHH
Q 007443 407 FIEALVMEAEKDKDIVVVHAGMEMDLS--LQLFQEKFPERYFDVGM-AEQH-AVTFSAGLACGG-LKPFCIIP--SAFLQ 479 (603)
Q Consensus 407 ~~~aL~~~~~~d~~vvvi~aDl~~~~~--l~~f~~~fp~R~id~GI-aE~~-~vg~AaGlA~~G-~~P~~~~~--~~Fl~ 479 (603)
+.+.|.+.+..| .+++ .|.+...- ...+.-..|.+|++.+- .=.+ .++.|.|.++.. -+|++.+- ..|+.
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m 89 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQF 89 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhc
Confidence 445555555433 3333 45432211 12233344788887642 2122 445677766542 45666664 44655
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCCC--------CC-----CCCCC---------hhhHH-HHhcCCCcEEEecCCH
Q 007443 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGS--------DG-----PTQCG---------AFDIT-FMSCLPNMIVMAPSDE 536 (603)
Q Consensus 480 ra~dQi~~~~a~~~lpV~~~~~~~G~~g~--------dG-----~tH~~---------~~dia-~lr~iPnl~V~~Psd~ 536 (603)
.. ..|.. +...++|++++.-..|..|. .+ ..+.. ..|.+ +.+.. |+.-+.-.++
T Consensus 90 ~~-~eL~T-a~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 166 (202)
T cd02006 90 MI-EELAV-GAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKP 166 (202)
T ss_pred cH-HHHHH-HHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCH
Confidence 44 23333 46678999887755443211 00 01110 12333 33333 7777888999
Q ss_pred HHHHHHHHHHHh---CCCCcEEEEee
Q 007443 537 DELVDMVATVAS---IDDRPVCFRYP 559 (603)
Q Consensus 537 ~e~~~~l~~a~~---~~~~P~~ir~~ 559 (603)
.|+...++.++. ..++|++|-..
T Consensus 167 ~el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 167 EELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 999999999974 25789988653
No 239
>PRK07064 hypothetical protein; Provisional
Probab=82.15 E-value=10 Score=43.07 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=74.3
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCC-CCCCCChhhHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFDITF 521 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~d-G~tH~~~~dia~ 521 (603)
=....|++++.+|.|.|+. |...+|. +..+=+..++.-|.+. -..+.||++++..... .+.+ +..|+......+
T Consensus 45 i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A-~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~ 123 (544)
T PRK07064 45 VPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEA-LTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTM 123 (544)
T ss_pred EeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEeCCCCcccccCCCcccccccCHHHH
Confidence 3567899999999999985 6444443 3565556677777653 5689999998743222 1222 234555567788
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
++.+-... +...++.++..+++.|+ ...+|||||-+|...
T Consensus 124 ~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 124 LRAVSKAA-FRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred hhhhcceE-EEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 88665443 33456777666655554 334799999999764
No 240
>PRK07586 hypothetical protein; Validated
Probab=81.68 E-value=9.4 Score=43.13 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=70.7
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++.+|.|.|+. |..-+|.. +.+=+..+.--|.+ +...+.||+++..........-..||......+++.+
T Consensus 44 ~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~v 122 (514)
T PRK07586 44 LGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN-ARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPV 122 (514)
T ss_pred EeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH-HHhcCCCEEEEecCCchhccCCCcccccchhhhhccc
Confidence 457899999999999986 54444433 55545666666655 3568999998875433221111225545555666654
Q ss_pred CCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGAI 563 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~~ 563 (603)
=- -.+...++.++..+++.|+ ....|||||-+|+...
T Consensus 123 tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 123 SG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred cc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 22 1234556666666555543 3347999999998653
No 241
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=81.59 E-value=11 Score=36.96 Aligned_cols=116 Identities=9% Similarity=0.096 Sum_probs=67.3
Q ss_pred hCCCCeeecch-hh-HHHHHHHHHHhcCC-CeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEE-eCCCCC--CC---
Q 007443 440 KFPERYFDVGM-AE-QHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLV--GS--- 508 (603)
Q Consensus 440 ~fp~R~id~GI-aE-~~~vg~AaGlA~~G-~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~-~~~G~~--g~--- 508 (603)
..|.+|+..+- .= -..+..|.|.++.. -+|++.+ =..|++.. ..|.. ++..++|++++. ..+|+. ..
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~-~eL~T-a~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSM-MEIMT-AVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccH-HHHHH-HHHhCCCeEEEEEECchhHHHHHHHH
Confidence 44888886532 11 22455666666542 3555555 44465543 34444 466789998877 444442 10
Q ss_pred --CC-----CCCCChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHh--CCCCcEEEEee
Q 007443 509 --DG-----PTQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCFRYP 559 (603)
Q Consensus 509 --dG-----~tH~~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~--~~~~P~~ir~~ 559 (603)
.+ ..+. ..|.. +.+++ |+.-+.-.++.|+...++.++. +.++|++|-..
T Consensus 119 ~~~~~~~~~~~~~-~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~ 177 (196)
T cd02013 119 DFYNNRFVGTELE-SESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIV 177 (196)
T ss_pred HHcCCCcccccCC-CCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 11 1111 13333 33333 6777788899999999999964 15889988654
No 242
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=81.58 E-value=2.2 Score=40.01 Aligned_cols=118 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred hHhCCCCeeecch-hhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--C
Q 007443 438 QEKFPERYFDVGM-AEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--C 514 (603)
Q Consensus 438 ~~~fp~R~id~GI-aE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--~ 514 (603)
.+..|+ +.+++. +|..-+|++||..+.|.+|-.-.-.+=+-.....+-.---..++|..++++|.|..+++=+.. .
T Consensus 37 veedp~-i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpm 115 (172)
T COG4032 37 VEEDPE-IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPM 115 (172)
T ss_pred HhcCCC-cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCcccccc
Confidence 334443 555554 688899999999999999988775444434333333222348899999999999854332211 1
Q ss_pred --ChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH---hCCCCcEEEEee
Q 007443 515 --GAFDITFMSCLPNMIVMAPSDEDELVDMVATVA---SIDDRPVCFRYP 559 (603)
Q Consensus 515 --~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~---~~~~~P~~ir~~ 559 (603)
...+ +++. -++-.+.|-.|+|+..++..+. .....|+.+++.
T Consensus 116 Gr~~~k--iLe~-~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 116 GRALPK--ILEG-LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred chhhHH--HHhh-cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 1233 3332 2455577777777666555442 346789888775
No 243
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=81.35 E-value=9.5 Score=43.96 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=74.8
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. ...|++++.+|.|.|+. |...++.+ +.+=+..++.-|.+ +-..+.||+++.............+|.+....+
T Consensus 40 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~-A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHIL-TRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIAT-AYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-HHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 3443 45999999999999985 64444333 55555666666665 356899999987543332112234666666677
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=-.... -.++.++...++.|+. ...|||||-+|+..
T Consensus 118 ~~~~tk~s~~-v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKHNFQ-IKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred HhhhcceEEe-cCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 7765544433 3566677766666643 24689999999764
No 244
>PRK11269 glyoxylate carboligase; Provisional
Probab=81.07 E-value=35 Score=39.41 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=76.7
Q ss_pred CeeecchhhHHHHHHHHHHhcC--CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG--GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~--G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia 520 (603)
|++.+ ..|++++.+|.|.|+. |...+|. ++.+=+..+.--+.+ +...+.||+++..........-..+|.+....
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 121 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS-ASADSIPILCITGQAPRARLHKEDFQAVDIES 121 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCcccccChhh
Confidence 56655 7999999999999985 4444333 377766667766655 35689999998754333211112366666667
Q ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 521 FMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 521 ~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
+++.+=-+. +...++.++..+++.|+. ...|||+|-+|+..
T Consensus 122 l~~~itk~s-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 122 IAKPVTKWA-VTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred HhhcceeEE-EEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 877653333 344677777777766643 24589999999764
No 245
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=80.80 E-value=7.1 Score=44.92 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=72.6
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
..-.|++++.+|.|.|+. |...+|.. +.+=+..+.--|.+. -..+.||+++.........+-.++|.+....+++.+
T Consensus 43 ~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~v 121 (575)
T TIGR02720 43 QVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDA-KEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADV 121 (575)
T ss_pred EeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHH-hhcCCCEEEEecCCccccCCCCCcceechhhhhhhc
Confidence 456799999999999985 54444443 666556676666653 458899999885544333234456766666777754
Q ss_pred CCcEEEecCCHHHH----HHHHHHHHhCCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDEL----VDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~----~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
=-+. ....++.++ ..+++.|.. ..||+||-+|+..
T Consensus 122 tk~~-~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 160 (575)
T TIGR02720 122 AVYN-RTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDF 160 (575)
T ss_pred ceEE-EEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcch
Confidence 3221 233445544 445555654 6799999999865
No 246
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=80.71 E-value=11 Score=43.11 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=72.4
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDI 519 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~di 519 (603)
+++.+ ..|++++.+|.|.|+. |...+|.. +.+=+..+..-|.+. -..+.||+++....... +. + .+|.....
T Consensus 47 ~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A-~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~~ 122 (561)
T PRK06048 47 RHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIATA-YMDSVPIVALTGQVPRSMIGN-D-AFQEADIT 122 (561)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEeccCCccccCC-C-Cccccchh
Confidence 45554 8999999999999985 64444433 566556677777653 56889999987543332 22 2 24444444
Q ss_pred HHHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 520 TFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 520 a~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
.+++.+=-.. +.-.++.++..+++.|+. ..+|||||-+|+..
T Consensus 123 ~~~~~itk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 123 GITMPITKHN-YLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred hhccCcceEE-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 5555443222 224567777777766653 24699999999764
No 247
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=80.63 E-value=5.5 Score=45.59 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=74.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEE-EEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPF-CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~-~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
...-|++++-+|.|.|+. |...+ +.++.+=+..++.-|.. +...+.||+++.........+-..||......+++.+
T Consensus 52 ~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~-A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~ 130 (568)
T PRK07449 52 THFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIE-AGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSY 130 (568)
T ss_pred eecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHH-HhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhh
Confidence 456899999999999985 54333 34477766777777765 3568999999975433321122236667778888876
Q ss_pred CCcEEEecCCH-----HHHHHHHHH---HHhCCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDE-----DELVDMVAT---VASIDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~-----~e~~~~l~~---a~~~~~~P~~ir~~r~~ 562 (603)
-...+-.|... ..+..+++. +.....|||+|-+|...
T Consensus 131 t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 131 PFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred hhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCCC
Confidence 65556566551 113445555 43346799999999764
No 248
>PRK08266 hypothetical protein; Provisional
Probab=80.43 E-value=8.1 Score=43.97 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=72.2
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCC-CCCCChhhHHHH
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDG-PTQCGAFDITFM 522 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG-~tH~~~~dia~l 522 (603)
....|++++.+|.|.|+. |...+|. +..+=+..++.-|.+ +...+.||+++....... +.+. .+|+......++
T Consensus 48 ~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~-A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~ 126 (542)
T PRK08266 48 HTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLT-AYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATL 126 (542)
T ss_pred eeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-HHhhCCCEEEEecCCChhhccCCCCcceecccHhhHH
Confidence 467899999999999985 5433433 366655667777665 356899999987433321 2222 234434666788
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
+.+--.. ....++.++..+++.|+ ....|||+|-+|...
T Consensus 127 ~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 127 RSFTKWA-ERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred hhhcceE-EEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 8765443 33445666666555554 334789999999754
No 249
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=79.81 E-value=22 Score=38.46 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=36.7
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEEE-cCCccccchHHHHH-HHhhhcC--------CCEEEEEECCCCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAM-SNAGYLD--------SNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~vi-GDGal~eG~~~EAl-n~A~~~~--------~nlivIlndN~~s 255 (603)
.|.+|.. .+.++.|.|+|++ |. ++++++. .|=. ..+||-+ +.+++++ .|++++..+ +..
T Consensus 76 ~~d~GIAEq~~vg~AaGlA~~----G~-~P~v~~~~~~f~---~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~ 145 (356)
T PLN02683 76 VLDTPITEAGFTGIGVGAAYA----GL-KPVVEFMTFNFS---MQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA 145 (356)
T ss_pred EEECchhHHHHHHHHHHHHHC----CC-EEEEEEehhhHH---HHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC
Confidence 4667764 4455788888875 33 4455443 3322 2677775 5566665 799999877 543
No 250
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.49 E-value=14 Score=42.31 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=74.0
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. ...|++++.+|.|.|+. |...+|.. ..+=+..++--|.+ +-..+.||+++..........-..+|......+
T Consensus 44 ~~v~-~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~-A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVL-VRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIAT-AYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEE-eccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 4444 48999999999999986 54333333 55545666666665 356899999987543332111223665566677
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=-. .....++.++..+++.|+. ...|||+|-+|+..
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 7654332 2344677777666666653 24699999999863
No 251
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=79.33 E-value=17 Score=42.34 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=40.7
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH-HHhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIlndN~~s 255 (603)
.|.+|..= +.++.|.|||++ | -++++++ -+.+.. -++|.+ +.++..+.|++++.+..+..
T Consensus 354 ~~d~GIaEq~~vg~AaGlA~~----G-~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~ 415 (617)
T TIGR00204 354 YFDVAIAEQHAVTFAAGMAIE----G-YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV 415 (617)
T ss_pred cccCCccHHHHHHHHHHHHHC----C-CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC
Confidence 56777643 445778888864 3 3444444 455665 788887 55778889999999988763
No 252
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.22 E-value=11 Score=43.27 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=74.7
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++.+ ..|++++.+|.|.|+. |...+|.. +.+=+..+.--|.+ +-..+.||+++.............+|......+
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~-A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 121 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIAT-AYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHH-HhhcCCCEEEEecCCCccccCCCCCcccchhHH
Confidence 45544 7999999999999985 65555444 55545566666655 245789999987544432111123555556667
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=-.. ....+++++...++.|+. ...|||||-+|+..
T Consensus 122 ~~~itk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 122 SRPVVKHS-FLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred hhhceeEE-EecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 77653333 334577777777776653 24689999999764
No 253
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=78.82 E-value=46 Score=32.51 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEecH--HhHHHHHHHHHHHhhcCCC-CeEE-EEeCCCCCCCCC-CCCC
Q 007443 441 FPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPS--AFLQRAYDQVVNDVDQQRL-PVRF-VITSAGLVGSDG-PTQC 514 (603)
Q Consensus 441 fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~~~--~Fl~ra~dQi~~~~a~~~l-pV~~-~~~~~G~~g~dG-~tH~ 514 (603)
.|.+|+..|-.=. .++.|.|+++.. -+|++.+-. .|+.- ...+.. ++..++ |+++ +...+|+....+ .+..
T Consensus 40 ~~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~eL~t-a~~~~l~~i~ivV~NN~~yg~~~~~~~~~ 116 (188)
T cd03371 40 HAQDFLTVGSMGH-ASQIALGIALARPDRKVVCIDGDGAALMH-MGGLAT-IGGLAPANLIHIVLNNGAHDSVGGQPTVS 116 (188)
T ss_pred ccCceeecCcccc-HHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccHHHH-HHHcCCCCcEEEEEeCchhhccCCcCCCC
Confidence 3588887533222 346677776543 356666543 35432 223433 345555 5554 445544421111 1111
Q ss_pred ChhhH-HHHhcCCCcEE-EecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 515 GAFDI-TFMSCLPNMIV-MAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 515 ~~~di-a~lr~iPnl~V-~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
...|. .+.+.+ |+.- ....++.|++.+++.++. .++|++|...
T Consensus 117 ~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev~ 161 (188)
T cd03371 117 FDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEVK 161 (188)
T ss_pred CCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 11232 333333 5553 456799999999999965 5889988654
No 254
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=78.79 E-value=11 Score=42.91 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=73.3
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~l 522 (603)
=....|++++.+|.|.|+. |..-+|.+ ..+=+..+.--|.+ +-..+.||+++....... +..-..||......++
T Consensus 44 i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~-A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~ 122 (554)
T TIGR03254 44 IGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-ATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAA 122 (554)
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH-HHhcCCCEEEEEccCCccccccCCCCcchhhHHHHh
Confidence 3557899999999999985 65455444 55545566666655 356889999887543332 1112246666667777
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHH----HhCCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATV----ASIDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a----~~~~~~P~~ir~~r~~ 562 (603)
+.+=... +...++.++..+++.| ....+|||||-+|+..
T Consensus 123 ~~vtk~~-~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 123 KPFAKAA-YRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred hhhheeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 7654433 4455677766555544 3335689999999754
No 255
>PTZ00089 transketolase; Provisional
Probab=78.78 E-value=17 Score=42.65 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=47.0
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCc
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPK 265 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s 265 (603)
++..|.. -+.++.|.|||.. +.-.++++.+. .+.. -+++++..++..+.|+++|....+.+. +.||++
T Consensus 405 fi~~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~---g~DG~T 473 (661)
T PTZ00089 405 YIRFGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGL---GEDGPT 473 (661)
T ss_pred eeeeeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceec---CCCCCC
Confidence 3556653 3455788888873 22345555554 6765 899999999999999999998888764 335654
No 256
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=78.65 E-value=19 Score=36.81 Aligned_cols=101 Identities=13% Similarity=0.263 Sum_probs=63.5
Q ss_pred HHHHHHHhcC------CCeEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCCC--ChhhH-HHHh
Q 007443 456 VTFSAGLACG------GLKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC--GAFDI-TFMS 523 (603)
Q Consensus 456 vg~AaGlA~~------G~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH~--~~~di-a~lr 523 (603)
++.|.|+|+. ..+.|+-+ =..|.. ..++.+.. ++..++| ++++....++ +.++.++. ..+|+ .+++
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~-a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~~ 188 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASF-AGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKFE 188 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHH-HHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHHH
Confidence 4455665543 45555555 555653 45677765 4677886 7777776665 33454432 23343 3444
Q ss_pred cCCCcEEEecC--CHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 524 CLPNMIVMAPS--DEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 524 ~iPnl~V~~Ps--d~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
.+ |+.++.-. |..++...++.+....++|++|...
T Consensus 189 a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 189 AF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred Hc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 44 88887766 8999999999986433789988664
No 257
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=78.54 E-value=14 Score=42.35 Aligned_cols=111 Identities=7% Similarity=-0.083 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCC
Q 007443 449 GMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLP 526 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~G~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iP 526 (603)
.-.|++++-+|.|.|+..-+|-+.+ ..+=...+..-|.+ +-..+.||+++.........+-..||......+++.+-
T Consensus 47 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~it 125 (574)
T PRK09124 47 TRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFD-CHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125 (574)
T ss_pred eCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHH-HhhcCCCEEEEecCCccccCCCCCccccChhhhcccce
Confidence 3489999999999999643443333 43323455555654 35578999988754333211122477677777777553
Q ss_pred CcEEEecCCHHHHH----HHHHHHHhCCCCcEEEEeecCC
Q 007443 527 NMIVMAPSDEDELV----DMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 527 nl~V~~Psd~~e~~----~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
-... ...+++++. .+++.|.. ..+||+|-+|+..
T Consensus 126 k~~~-~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~Dv 163 (574)
T PRK09124 126 HYCE-LVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGDV 163 (574)
T ss_pred eeeE-EeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChhh
Confidence 3332 244555544 45555544 4699999999764
No 258
>PRK12474 hypothetical protein; Provisional
Probab=77.84 E-value=21 Score=40.41 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
..-.|++++.+|.|.|+. |..-+|.+ +.+=+..+.--|.+. -..+.||+++.............||......+++.+
T Consensus 48 ~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A-~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~v 126 (518)
T PRK12474 48 LCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNA-RRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPV 126 (518)
T ss_pred EecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHH-hhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcc
Confidence 346899999999999985 65444443 555455666665542 457899998874432211111235555555777754
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
--. .+...++.++..+++.|+. ...+||+|-+|+..
T Consensus 127 tk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 127 SRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred cce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 332 2445788888887777652 34589999999875
No 259
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=77.62 E-value=21 Score=41.88 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=41.0
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCc
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSL 256 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si 256 (603)
++..|..= +.+++|.|||+. +.-.++++.+ ..+.. ..++++..++..+.|+++|....+.+.
T Consensus 398 fi~~GIaEq~mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~ 460 (653)
T TIGR00232 398 YIHYGVREFAMGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGV 460 (653)
T ss_pred eEeecccHHHHHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCC
Confidence 35566543 344777888773 2223344333 35554 788999999988999999998777654
No 260
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=77.23 E-value=30 Score=34.05 Aligned_cols=97 Identities=9% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHhcC----C-CeEEEEecHH--hH-HHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCC
Q 007443 456 VTFSAGLACG----G-LKPFCIIPSA--FL-QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPN 527 (603)
Q Consensus 456 vg~AaGlA~~----G-~~P~~~~~~~--Fl-~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPn 527 (603)
+++|+|+|+. | -.+++.++.+ |. -..++.+... +....|++++....++. .++++- ... ..++. -|
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A-~~~~~~li~vvdnN~~~-~~~~~~-~~~--~~~~a-~G 154 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNA-GYLKSNMIVILNDNEMS-ISPNVG-TPG--NLFEE-LG 154 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHH-HHhCCCEEEEEECCCcc-cCCCCC-CHH--HHHHh-cC
Confidence 4556666543 3 2445555444 33 1456666554 55699999999887763 344443 222 23343 34
Q ss_pred cEE---EecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 528 MIV---MAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 528 l~V---~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+.+ +...|..++...++.+.. .++|++|...
T Consensus 155 ~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 155 FRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred CCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 444 455688888888888744 6789988653
No 261
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=76.58 E-value=4.7 Score=36.25 Aligned_cols=43 Identities=35% Similarity=0.543 Sum_probs=25.1
Q ss_pred hHHhhcCCeEEe-ecCCCCH-HHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 323 TLFEELGLYYIG-PVDGHNI-EDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 323 ~lfea~G~~~ig-~vDGhD~-~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
...+++|+.|+. ||++.++ ++-+++|.++.+. ..+|+++||+|
T Consensus 51 ~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 457889987754 7776554 3455566666554 27899999987
No 262
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=76.22 E-value=11 Score=41.54 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=73.3
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~l 522 (603)
=....|++++-+|-|.|+. |..-+|. ++.+=...++--|.. +-..+.||+++....... +. | .+|......++
T Consensus 42 v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~~~~~ 118 (432)
T TIGR00173 42 HVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE-ASYSGVPLIVLTADRPPELRGC-G-ANQTIDQPGLF 118 (432)
T ss_pred EEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH-hcccCCcEEEEeCCCCHHHhCC-C-CCcccchhhHH
Confidence 4568999999999999986 6443333 366655666666655 356889999987543321 22 2 35666666777
Q ss_pred hcCCCcEEE--ecCC-------HHHHHHHHHHHHhCCCCcEEEEeecCC
Q 007443 523 SCLPNMIVM--APSD-------EDELVDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~--~Psd-------~~e~~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
+.+=-...- .|.+ +..+..+++.|....+|||+|-+|...
T Consensus 119 ~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 119 GSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 766444333 3443 244566666665445699999999754
No 263
>PLN02573 pyruvate decarboxylase
Probab=76.21 E-value=13 Score=42.77 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCCh------h
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------F 517 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~------~ 517 (603)
....|++++.+|-|.|+. | .++|.. +.+=...+..-|.+. -..+.||+++...... .+.++..||.. .
T Consensus 59 ~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla~A-~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~ 136 (578)
T PLN02573 59 GCCNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ 136 (578)
T ss_pred EeCCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHHHH-HHhCCCEEEEECCCChhhhhcCceeeeecCCCChHH
Confidence 467899999999999984 7 666655 555445555555542 4578999998754333 24455566542 2
Q ss_pred hHHHHhcCCCcEEEecCCHHHHH----HHHHHHHhCCCCcEEEEeecCC
Q 007443 518 DITFMSCLPNMIVMAPSDEDELV----DMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 518 dia~lr~iPnl~V~~Psd~~e~~----~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
++.+++.+--+. ....++.++. .+++.|.. ..+||||-+|+..
T Consensus 137 ~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~-~~gPV~l~iP~Dv 183 (578)
T PLN02573 137 ELRCFQTVTCYQ-AVINNLEDAHELIDTAISTALK-ESKPVYISVSCNL 183 (578)
T ss_pred HHHHhhceEEEE-EEeCCHHHHHHHHHHHHHHHHh-cCCCEEEEeehhh
Confidence 335555443222 2234454444 45555544 4689999999875
No 264
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=75.84 E-value=6.4 Score=36.76 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=63.8
Q ss_pred CCCCeeec--chhhHHHHHHHHHHhcC--CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCC-CCC--C----C
Q 007443 441 FPERYFDV--GMAEQHAVTFSAGLACG--GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSA-GLV--G----S 508 (603)
Q Consensus 441 fp~R~id~--GIaE~~~vg~AaGlA~~--G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~-G~~--g----~ 508 (603)
.|.+|+.. .-+=...++.|.|+++. +.++|+-+ =.+|+.- ...|.. +...++|++++.-.. ++. + .
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el~t-a~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQELAT-AVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGHHH-HHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchhHH-HhhccceEEEEEEeCCcceEecccccc
Confidence 37888873 23344556667777765 44444444 4456544 344444 456788988876443 331 1 0
Q ss_pred CCC-C----C---CChhhH-HHHhcCCCcEEEecCCH--HHHHHHHHHHHhCCCCcEEE
Q 007443 509 DGP-T----Q---CGAFDI-TFMSCLPNMIVMAPSDE--DELVDMVATVASIDDRPVCF 556 (603)
Q Consensus 509 dG~-t----H---~~~~di-a~lr~iPnl~V~~Psd~--~e~~~~l~~a~~~~~~P~~i 556 (603)
.+. + . ....|+ .+.+.. |+..+.-.++ +|++..++.++. .++|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vI 151 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVI 151 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEE
T ss_pred CcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEE
Confidence 111 1 0 112233 344443 7776664444 999999999974 6899987
No 265
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=75.34 E-value=18 Score=33.81 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCC-CeEEEEec--HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCC------------CCCChhhH
Q 007443 455 AVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP------------TQCGAFDI 519 (603)
Q Consensus 455 ~vg~AaGlA~~G-~~P~~~~~--~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~------------tH~~~~di 519 (603)
.++.|.|++... -++++.+. ..|+. .+..+.. +...++|++++....+..+..+. ......|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l~t-a~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQELAT-AVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHHHH-HHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 344566666543 24444443 33444 4555555 45678999998766554221111 11122233
Q ss_pred H-HHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 520 T-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 520 a-~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
. +.+. -|+......++.|++.+++.+. ..++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~-~~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEAL-AAGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 3 3333 3777888888999999999996 4688998854
No 266
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=74.92 E-value=13 Score=42.74 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~ 521 (603)
|++. ...|++++.+|.|.|+. |...+|.+ +.+=+..+..-|.+ +-..+.||+++....+....+-..+|......+
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 130 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT-AQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGI 130 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH-HhhcCCCEEEEecCCCccccCCCCccccchhhh
Confidence 4444 67999999999999985 65444433 66655666666655 345889999987543332111112444444455
Q ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 522 MSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
++.+=-. .....+++++..+++.|+. ..+|||||-+|+..
T Consensus 131 ~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 131 TLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 5543221 2344577777777766643 24589999999764
No 267
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=74.71 E-value=34 Score=33.18 Aligned_cols=117 Identities=10% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCCeeecch--hhHHHHHHHHHHhcCC-CeEEEEe--cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC----CC-
Q 007443 441 FPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS----DG- 510 (603)
Q Consensus 441 fp~R~id~GI--aE~~~vg~AaGlA~~G-~~P~~~~--~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~----dG- 510 (603)
.|.+++..+- +=-..++.|.|.++.- -++++.+ =..|+.-. ..+.. ++..++|++++....|..+. .+
T Consensus 39 ~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~-~el~t-a~~~~~p~~ivV~nN~~~~~~~~~~~~ 116 (183)
T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTV-QELST-MIRYGLNPIIFLINNDGYTIERAIHGP 116 (183)
T ss_pred CCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccH-HHHHH-HHHhCCCCEEEEEECCCcEEEEEeccC
Confidence 3677887532 1112345566655542 3455555 44465433 33554 45567787776654433211 11
Q ss_pred -CCCCC--hhhHH-HHhcC---CCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 511 -PTQCG--AFDIT-FMSCL---PNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 511 -~tH~~--~~dia-~lr~i---Pnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
..+.. ..|.. +.... |+...+...++.|+...++.++...++|++|-..
T Consensus 117 ~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~ 172 (183)
T cd02005 117 EASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVI 172 (183)
T ss_pred CcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11211 12332 33333 2367777899999999999997535789988553
No 268
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=73.99 E-value=21 Score=41.17 Aligned_cols=111 Identities=10% Similarity=-0.009 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC-CCCCCCCChhhHHHHhcC
Q 007443 449 GMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 449 GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g-~dG~tH~~~~dia~lr~i 525 (603)
.--|++++.+|.|.|+. |...+|.. ..+=+..++--|.+ +-..+.||+++........ ..| .+|...+..+++.+
T Consensus 47 ~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~-~~Qe~d~~~l~~~~ 124 (578)
T PRK06546 47 VRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD-AHRSGAPVLAIASHIPSAQIGSG-FFQETHPDRLFVEC 124 (578)
T ss_pred eCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH-HHhcCCCEEEEeCCCCccccCCC-CccccChhhhcccc
Confidence 35899999999999996 55444443 44434556666655 3568899999875433221 122 35656666777754
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (603)
=-. .+...++.++...++.|+. ..+|||+|-+|+..
T Consensus 125 tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 125 SGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred eee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 332 2455667776665554432 35799999999764
No 269
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=73.55 E-value=17 Score=42.11 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHHh
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFMS 523 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~lr 523 (603)
..-.|++++.+|.|.|+. |...+|.. +.+=+..+..-|.. +-..+.||+++....... +.+ .+|......+++
T Consensus 47 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~-A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~ 123 (597)
T PRK08273 47 QARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYD-AKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFK 123 (597)
T ss_pred EeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-HHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHH
Confidence 557899999999999985 65444443 66655666666655 345889999887543332 322 355555556666
Q ss_pred cCC-CcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeecCC
Q 007443 524 CLP-NMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (603)
Q Consensus 524 ~iP-nl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (603)
.+= -. .....++.++...++.|+. ...+||||-+|+..
T Consensus 124 ~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 124 DVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred HHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 542 11 2344555555555444432 24689999999765
No 270
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=73.36 E-value=20 Score=41.13 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=74.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHHh
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFMS 523 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~lr 523 (603)
.--.|++++.+|.|.|+. |...+|.. ..+=+..+..-|.+ +...+.||+++....... +..-.++|......+++
T Consensus 52 ~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~ 130 (569)
T PRK09259 52 GFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-ATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAK 130 (569)
T ss_pred eeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-HHhcCCCEEEEEccCCcccccccCCCccccchhhhhh
Confidence 456899999999999985 55555544 66766777777765 356899999887443221 11112466666667777
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 524 CLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 524 ~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
.+=... +...++.++...++.|+ ...+|||||-+|+..
T Consensus 131 ~~tk~s-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 131 PFCKAA-FRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hheeee-EEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 654433 33456777776555554 335789999999764
No 271
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=73.20 E-value=13 Score=46.17 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=91.3
Q ss_pred CccHHHHHHHHHHHHHhcCCCEE----EEecCCCCC--cch-hhhhHhCC------CCeeecchhhHHHHHHHHHHhcCC
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIV----VVHAGMEMD--LSL-QLFQEKFP------ERYFDVGMAEQHAVTFSAGLACGG 466 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vv----vi~aDl~~~--~~l-~~f~~~fp------~R~id~GIaE~~~vg~AaGlA~~G 466 (603)
-++-.+|+.+.+.+..+.|.+-= .+-+...|+ +++ ..|.+ +. +-+|.-++.|--++.++.|.++.|
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~-~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWK-AKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHH-hhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 35677899988887666654321 121222222 122 22322 22 368899999999999999999776
Q ss_pred CeE---EEEe----cHHh--HHHHHHHHHHHhhcCCC----C-eEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEe
Q 007443 467 LKP---FCII----PSAF--LQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMA 532 (603)
Q Consensus 467 ~~P---~~~~----~~~F--l~ra~dQi~~~~a~~~l----p-V~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~ 532 (603)
+.| +--. |..= +.|+.|.+++. ++... - |+++++.-|-.. -.+-|+++-.+ ..-+|-|+.
T Consensus 98 ~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~S--Sq~eqdSr~~~---~~a~iPvl~ 171 (1159)
T PRK13030 98 ADPERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCVS--SSMPHQSDFAL---IAWHMPVLN 171 (1159)
T ss_pred ccCCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--CcCHHHHHHHH---HHcCCceeC
Confidence 666 2222 2222 48999999975 44222 2 233333333211 01112223323 345677999
Q ss_pred cCCHHHHHHHHHHHHh---CCCCcEEEEee
Q 007443 533 PSDEDELVDMVATVAS---IDDRPVCFRYP 559 (603)
Q Consensus 533 Psd~~e~~~~l~~a~~---~~~~P~~ir~~ 559 (603)
|+|++|+..+.+.+++ ...-||.+|..
T Consensus 172 Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~ 201 (1159)
T PRK13030 172 PANVQEYLDFGLYGWALSRYSGAWVGFKAI 201 (1159)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 9999999999988764 34569988774
No 272
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=72.15 E-value=56 Score=30.28 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=36.1
Q ss_pred cCchhhhHHHHHHHHHHHHHcCCCCeEEEEE-cCCccccchHHHHHHHhhhcCCCEEEEEECCCC
Q 007443 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 191 ~G~~G~~is~A~G~A~A~~l~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nlivIlndN~~ 254 (603)
+-|=..+..+|.|.+.+. .+.-++.+. |=|.+ ...+++..|...+.|+++|.-+...
T Consensus 40 ~~~E~~A~~~A~g~~~~~----~~~~v~~~~~gpG~~---n~~~~l~~A~~~~~Pll~i~~~~~~ 97 (155)
T cd07035 40 VRHEQGAVGMADGYARAT----GKPGVVLVTSGPGLT---NAVTGLANAYLDSIPLLVITGQRPT 97 (155)
T ss_pred eCCHHHHHHHHHHHHHHH----CCCEEEEEcCCCcHH---HHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 334445556677777662 222344444 44444 4457888888889999999877664
No 273
>PRK06154 hypothetical protein; Provisional
Probab=72.09 E-value=66 Score=36.98 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcch--hhhhHhCCCCeeecch--hhHHHHHHHHHHhcCC-CeEEEEe--cHHhHH
Q 007443 407 FIEALVMEAEKDKDIVVVHAGMEMDLSL--QLFQEKFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCII--PSAFLQ 479 (603)
Q Consensus 407 ~~~aL~~~~~~d~~vvvi~aDl~~~~~l--~~f~~~fp~R~id~GI--aE~~~vg~AaGlA~~G-~~P~~~~--~~~Fl~ 479 (603)
+.+.|.+.+..+ +.+ +..|.+..... ..+.-..|.+|+..+- +=...++.|.|.++.- -+|++.+ =..|++
T Consensus 386 ~~~~l~~~l~~~-d~i-v~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m 463 (565)
T PRK06154 386 VVWELQHAVDIK-TVI-ITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGM 463 (565)
T ss_pred HHHHHHHhcCCC-CEE-EEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 344555444322 333 33454432211 2233344889987642 1122445555555542 3566655 444655
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCC-CC------CCCCCC---hhhH-HHHhcCCCcEEEecCCHHHHHHHHHHHHh
Q 007443 480 RAYDQVVNDVDQQRLPVRFVITSAGLVG-SD------GPTQCG---AFDI-TFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (603)
Q Consensus 480 ra~dQi~~~~a~~~lpV~~~~~~~G~~g-~d------G~tH~~---~~di-a~lr~iPnl~V~~Psd~~e~~~~l~~a~~ 548 (603)
..- .|.. +...++|++++....+..| .. +..+.. ..|. .+.+.+ |+.-+.=.++.|+...++.++.
T Consensus 464 ~~~-EL~T-a~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~ 540 (565)
T PRK06154 464 TGM-DFET-AVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALR 540 (565)
T ss_pred cHH-HHHH-HHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHh
Confidence 442 3433 4668899988775554322 10 111111 1233 344444 7777777899999999999975
Q ss_pred --CCCCcEEEEee
Q 007443 549 --IDDRPVCFRYP 559 (603)
Q Consensus 549 --~~~~P~~ir~~ 559 (603)
..++|++|-..
T Consensus 541 ~~~~~~p~lIev~ 553 (565)
T PRK06154 541 KVKEGTPALLEVI 553 (565)
T ss_pred hccCCCeEEEEEE
Confidence 35789988664
No 274
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=71.81 E-value=20 Score=41.26 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=72.8
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCC------CCC
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDG------PTQ 513 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG------~tH 513 (603)
|++. .--|++++.+|-|.|+. |...+|.. ..+=+..+..-|.. +...+.||+++....... +.++ ..+
T Consensus 52 ~~V~-~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~-A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVI-CPHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHN-AARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEe-cCCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHH-HhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 4444 35699999999999986 54444443 66666677776665 356899999887543221 1110 123
Q ss_pred CC-hhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 514 CG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 514 ~~-~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
|. .....+++.+-.. .+...+++++...++.|+. ..+|||+|-+|+..
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 44 4556777754332 2345667777776666543 34789999999653
No 275
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.52 E-value=45 Score=39.06 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=40.4
Q ss_pred CcCcCchhh-hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 007443 188 PFNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~G~-~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIlndN~~ 254 (603)
.+.+|..=+ .++.|.|||++ | -+++++.+. .+.. .+++.+ +.++.++.|++++.+.-+.
T Consensus 363 ~id~GIaE~~mvg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 363 VFDVGIAEQHAVTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred ccccCccHHHHHHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 466776544 34778888863 3 345555544 4555 888888 5578888999999977665
No 276
>PRK12753 transketolase; Reviewed
Probab=69.53 E-value=43 Score=39.43 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=46.1
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCc
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPK 265 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s 265 (603)
++..|..= ..+++|.|||.- +.-.++++.+ +.|.. .+++++.+++..+.|+++|...-+.+. +.||++
T Consensus 404 ~i~~GIaEq~mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~---G~DG~T 472 (663)
T PRK12753 404 YIHYGVREFGMTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGL---GEDGPT 472 (663)
T ss_pred EEEeeecHHHHHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCccc---CCCCcc
Confidence 45566533 345778888872 1223444444 36665 899999999888999999998888765 335554
No 277
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=69.31 E-value=84 Score=35.86 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=71.1
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCCh---
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGA--- 516 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~--- 516 (603)
|++. .-.|++++-+|.|.|+. |...+|.. +.+=+..+..-|.. +...+.||+++....... +.+..+|++.
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~-A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG-AYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH-HhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 5554 78999999999999985 65555544 56655666666655 345889999987543321 3333334333
Q ss_pred h-hHHHHhcCCCcE--EEecCC-HHHHHHHHHHHHhCCCCcEEEEeecCCC
Q 007443 517 F-DITFMSCLPNMI--VMAPSD-EDELVDMVATVASIDDRPVCFRYPRGAI 563 (603)
Q Consensus 517 ~-dia~lr~iPnl~--V~~Psd-~~e~~~~l~~a~~~~~~P~~ir~~r~~~ 563 (603)
. ...+++.+=-.. |..|.+ +..+..+++.|.. .++|++|-+|+...
T Consensus 118 ~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv~ 167 (535)
T TIGR03394 118 DSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDMV 167 (535)
T ss_pred HHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhhc
Confidence 2 246666543222 223333 3344556666654 57999999998753
No 278
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=68.99 E-value=43 Score=39.60 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=41.5
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHH-hhhcCCCEEEEEECCCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN-AGYLDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~-A~~~~~nlivIlndN~~ 254 (603)
+|.+|.. .+.++.|.|||.. | -++|+++.. .|.. -+|+-+.+ ++.++.|+.++++.-+.
T Consensus 425 ffDvGIAEQhaVt~AAGLA~~----G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGl 485 (701)
T PLN02225 425 FFNVGMAEQHAVTFSAGLSSG----G-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGL 485 (701)
T ss_pred ccccCccHHHHHHHHHHHHHC----C-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCcc
Confidence 5677764 3455778888864 3 366777774 6665 77887766 57778999999987554
No 279
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=67.83 E-value=58 Score=42.53 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=76.8
Q ss_pred ecchhhHHHHHHHHHHhcCCCeEEEE--ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 447 DVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~G~~P~~~--~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
=+...|+.++-+|.|.|+.--+|.+. +..+=+..++--|.. +...+.||+++.........+-..+|.+....+++.
T Consensus 343 i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~e-A~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~p 421 (1655)
T PLN02980 343 IACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVE-ASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGS 421 (1655)
T ss_pred EeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH-HhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHh
Confidence 36789999999999999964444443 366666777777766 366889999987543332111123777888888887
Q ss_pred CCCcEEEe--cCCH-------HHHHHHHHHHHhCCCCcEEEEeec
Q 007443 525 LPNMIVMA--PSDE-------DELVDMVATVASIDDRPVCFRYPR 560 (603)
Q Consensus 525 iPnl~V~~--Psd~-------~e~~~~l~~a~~~~~~P~~ir~~r 560 (603)
+--...-. |.+. ..+..+++.|....+|||+|-+|.
T Consensus 422 vtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 422 FVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 76655543 4441 445666666655456999999995
No 280
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=67.17 E-value=39 Score=32.46 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHHhcCC-CeEEEEecH--HhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCC-----------CCChhhHH-H
Q 007443 457 TFSAGLACGG-LKPFCIIPS--AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT-----------QCGAFDIT-F 521 (603)
Q Consensus 457 g~AaGlA~~G-~~P~~~~~~--~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~t-----------H~~~~dia-~ 521 (603)
+.|.|+++.. -++++.+.. .|++-.+..+.. +...++|++++.-..+..|.-+.+ .....|+. +
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~t-a~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 136 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGLIN-AVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEAL 136 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHHHH-HHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHH
Confidence 3555555543 356666644 454443455555 467889998876544322211111 11112332 2
Q ss_pred HhcCCCcEEEecCCHHHHH---HHHHHHHhCCCCcEEEEe
Q 007443 522 MSCLPNMIVMAPSDEDELV---DMVATVASIDDRPVCFRY 558 (603)
Q Consensus 522 lr~iPnl~V~~Psd~~e~~---~~l~~a~~~~~~P~~ir~ 558 (603)
.+.. |+.-+...++.|++ ..++.++. .++|++|..
T Consensus 137 a~a~-G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 137 VRAI-GVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHC-CCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2322 55555555555554 77888854 589998865
No 281
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=66.24 E-value=65 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=25.6
Q ss_pred Hhhc-CCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Q 007443 325 FEEL-GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (603)
Q Consensus 325 fea~-G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~ 365 (603)
+..+ |+.++.|. |..++...++.+.+...++|++|...
T Consensus 133 ~~~iPg~~v~~Ps---d~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVPS---DPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE-S---SHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccCC---CHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3444 78888554 67788888888877212799998653
No 282
>PLN02790 transketolase
Probab=65.66 E-value=50 Score=38.80 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=43.6
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcC-CCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCc
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKG-KRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPK 265 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g-~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s 265 (603)
++..|.. -+.+++|.|||.. | .-.++++.+ ..+.. ..++++..++..+.|+++|....+.+. +.||++
T Consensus 394 fi~~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf--~~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~---G~DG~T 463 (654)
T PLN02790 394 NVRFGVREHGMGAICNGIALH----SSGLIPYCATF--FVFTD-YMRAAMRLSALSEAGVIYVMTHDSIGL---GEDGPT 463 (654)
T ss_pred eEEeeechHHHHHHHHHHHhc----CCCcEEEEEec--HHHHH-HHHHHHHHHHhcCCCeEEEEECCceee---cCCCCC
Confidence 4556653 3455788888874 3 234455433 12333 678899999888999999998877653 335554
No 283
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=65.40 E-value=44 Score=37.64 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=35.8
Q ss_pred CcCcCchhh-hHHHHHHHHHHHHHcCCCCeEEEEE-cCCccccchHHHHH-HHhh--------hcCCCEEEEEECCCC
Q 007443 188 PFNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAM-SNAG--------YLDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~G~-~is~A~G~A~A~~l~g~~~~Vv~vi-GDGal~eG~~~EAl-n~A~--------~~~~nlivIlndN~~ 254 (603)
++.+|..=+ .++.|.|+|++ | -+++|.+. .+=.+ .+|+-+ |.++ +++.|++|+..|-+.
T Consensus 191 ~id~gIaEq~~vg~AaGlA~~----G-~rPiv~~~~~~f~~---ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~ 260 (464)
T PRK11892 191 VIDTPITEHGFAGIGVGAAFA----G-LKPIVEFMTFNFAM---QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAA 260 (464)
T ss_pred eeecCccHHHHHHHHHHHHhC----C-CEEEEEEehHHHHH---HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCC
Confidence 456776433 45778888875 3 34555554 33332 566666 5556 677999998665443
No 284
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=61.74 E-value=78 Score=37.42 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=41.2
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH-HHhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIlndN~~s 255 (603)
.|.+|.. .+.++.|.|||+. | -++|++++. .|.. -+|+-+ +.++..+.|++++++..+.+
T Consensus 400 ~fdvGIAEq~~vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~v 461 (677)
T PLN02582 400 CFDVGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLV 461 (677)
T ss_pred ccccCcCHHHHHHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 5677764 3455778888874 4 456666544 4554 777755 66678889999999987764
No 285
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=61.49 E-value=65 Score=30.82 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC
Q 007443 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (603)
Q Consensus 196 ~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~ 253 (603)
.+.-+|-|.|.+. ++-..+++..|=|.++ ..-++.+|...+.||++|.-+-.
T Consensus 46 ~A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 97 (162)
T cd07037 46 SAAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRP 97 (162)
T ss_pred HHHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCC
Confidence 3344566666552 4344444444666654 23577788888899999986533
No 286
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=61.31 E-value=84 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 007443 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (603)
Q Consensus 329 G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v 364 (603)
|+.++.|. |..++..+++.+.+. ++|++|..
T Consensus 142 ~l~V~~P~---d~~e~~~~l~~a~~~--~~Pv~i~~ 172 (327)
T PRK09212 142 GLKVVAPY---FAADCKGLLKTAIRD--PNPVIFLE 172 (327)
T ss_pred CCEEEeeC---CHHHHHHHHHHHHhC--CCcEEEEE
Confidence 78888665 566777777777765 78999864
No 287
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=61.06 E-value=1.2e+02 Score=35.02 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC
Q 007443 212 GKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (603)
Q Consensus 212 g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~ 253 (603)
..|-.|.+|.+|-+.+. +..||+.+|-.-+-|+++-+|-=.
T Consensus 224 vtDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred cccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC
Confidence 34667888888877764 889999999988888888877543
No 288
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=59.84 E-value=74 Score=37.35 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=38.9
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH-HHhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nlivIlndN~~s 255 (603)
.|.+|..= +.++.|.|||+. | -+++++++ +.+.. .+|+.+ +.++..+.|++++++..+..
T Consensus 401 ~fdvGIAEq~~Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~~ 462 (641)
T PLN02234 401 CFDVGIAEQHAVTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGLM 462 (641)
T ss_pred ccCCCcCHHHHHHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCccC
Confidence 56777643 345778888774 3 34555554 34443 677766 45567789999999887753
No 289
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=59.66 E-value=66 Score=36.27 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=67.2
Q ss_pred hhhHhCCCCeeecchhhHHHHHHHHHHhc------CCCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEe-CCCCCC
Q 007443 436 LFQEKFPERYFDVGMAEQHAVTFSAGLAC------GGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVG 507 (603)
Q Consensus 436 ~f~~~fp~R~id~GIaE~~~vg~AaGlA~------~G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~-~~G~~g 507 (603)
-|..+.|.|.+|.|--=. +|+..|+|+ -+.+.+|-- =+.|-.-++| ...++..++||+++.. ..|+.|
T Consensus 414 ~l~~~~Pr~rLDaGtfgT--MGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg 489 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGTFGT--MGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYG 489 (571)
T ss_pred hccCCCcccccCCccccc--cccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccc
Confidence 356677999999875433 333334333 244444433 5556555555 2345678899998776 567754
Q ss_pred CC--CCCCCC----hhhHHHHhcCC-----------CcEEEecCCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 508 SD--GPTQCG----AFDITFMSCLP-----------NMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 508 ~d--G~tH~~----~~dia~lr~iP-----------nl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
.| |.+.-. ..++..+..++ |.+=+.=.+++|+...++.+....++|++|-.
T Consensus 490 ~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINV 557 (571)
T KOG1185|consen 490 LDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINV 557 (571)
T ss_pred cCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 33 211110 11111111112 23334446999999999999877778988843
No 290
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=58.25 E-value=55 Score=37.88 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=63.7
Q ss_pred eecchhhHHHHHHHHHHhcC----C--CeEEEEe-cHHhHH-HHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCC---C-
Q 007443 446 FDVGMAEQHAVTFSAGLACG----G--LKPFCII-PSAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT---Q- 513 (603)
Q Consensus 446 id~GIaE~~~vg~AaGlA~~----G--~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~t---H- 513 (603)
+.+|+.= .-+++|+|+|.. | .+.|+.+ =+.|.. .+++.+.+ ++.+++|++++....++.. ++++ .
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~-A~~~k~~li~Ii~dN~~si-~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNN-AAELKSNLIIIVNDNQMSI-AENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHH-HHhhCCCEEEEEECCCCcC-CCCCchhhh
Confidence 5666644 467778887753 3 3344433 334544 77888866 5778899999998877632 2222 1
Q ss_pred C-C------hhhH-HHHhcCCCcEEEec---CCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 514 C-G------AFDI-TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 514 ~-~------~~di-a~lr~iPnl~V~~P---sd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
. . ..++ .++..+ |+..+.| -|..++..+++.+ ...++|++|..
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a-~~~~gP~~i~~ 240 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEV-KDIDHPIVLHI 240 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHH-HhCCCCEEEEE
Confidence 1 0 1111 244554 6655555 5566666666666 34578998855
No 291
>PRK12754 transketolase; Reviewed
Probab=57.97 E-value=1.1e+02 Score=36.18 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=44.9
Q ss_pred CcCcCchhhh-HHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCc
Q 007443 188 PFNAGHGCNS-VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPK 265 (603)
Q Consensus 188 ~~~~G~~G~~-is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s 265 (603)
.+..|..=+. +++|.|||+- +.-.++++.+ ..|.. .+++++.+++..+.|+++|...-+.+. +.||++
T Consensus 404 ~i~~GIaE~~Mv~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~---G~DG~T 472 (663)
T PRK12754 404 YIHYGVREFGMTAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGL---GEDGPT 472 (663)
T ss_pred eEeeccchhhHHHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCcccc---CCCCCC
Confidence 3555653333 4677888863 2223333333 35655 899999999999999999999988875 335554
No 292
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=57.07 E-value=90 Score=35.93 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=72.9
Q ss_pred cchhhHHHHHHHHHHhc-CCCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLAC-GGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~-~G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
...-||.++.+|.|.|+ .|..-+|-. -.+=...+..-|.+ +-..+.||+++...-....-+=..+|-.....+++.+
T Consensus 44 ~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~-A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~ 122 (550)
T COG0028 44 LVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD-AYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPI 122 (550)
T ss_pred EeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH-HHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhh
Confidence 34679999999999998 477666654 44434555555544 3457899998875332221111245556566677655
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCCC
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGAI 563 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~~ 563 (603)
--.. +...+++|+-..++.|+. ..+||++|-+|+.-.
T Consensus 123 tk~~-~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 123 TKYN-FEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred heeE-EEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 4333 455777887777766643 456899999998653
No 293
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=56.11 E-value=1.3e+02 Score=28.57 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=31.8
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEE--cCCccccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVI--SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~vi--GDGal~eG~~~EAln~A~~~~~nlivIlndN~~s 255 (603)
-|=.....+|.|++.+. ++..+|+. |=|.++ ..-+|..|...+.|+++|.-+-...
T Consensus 46 ~~E~~A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~ 103 (172)
T PF02776_consen 46 RHEQGAAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSA 103 (172)
T ss_dssp SSHHHHHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGG
T ss_pred cCcchhHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchh
Confidence 33344556677777663 33444443 334332 3346666766779999998876643
No 294
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=54.94 E-value=51 Score=37.53 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=71.5
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCC--------CCC
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGP--------TQC 514 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~--------tH~ 514 (603)
=...-|++++.+|.|.|+. | +.+|.. ..+=+..+.--|.+ +-..+.||+++....... +.+-. .+|
T Consensus 43 v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~-A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q 120 (539)
T TIGR03393 43 VGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG-SYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFR 120 (539)
T ss_pred eccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH-HhhccCCEEEEECCCCcchhhcCceeeeecCCCchH
Confidence 4567899999999999985 7 566654 66666677766665 355889999987533221 00001 122
Q ss_pred ChhhHHHHhcCCCcEE----EecCC-HHHHHHHHHHHHhCCCCcEEEEeecCCC
Q 007443 515 GAFDITFMSCLPNMIV----MAPSD-EDELVDMVATVASIDDRPVCFRYPRGAI 563 (603)
Q Consensus 515 ~~~dia~lr~iPnl~V----~~Psd-~~e~~~~l~~a~~~~~~P~~ir~~r~~~ 563 (603)
.. ..+++. ++. +.|.+ +.++..+++.|+. ..+|++|-+|+...
T Consensus 121 ~~--~~~~~~---itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~Dv~ 168 (539)
T TIGR03393 121 HF--YRMAAE---VTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVDVA 168 (539)
T ss_pred HH--HHHhhc---eEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEeccccc
Confidence 21 234433 332 24566 7889999999975 57899999998764
No 295
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=54.92 E-value=58 Score=40.74 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=92.0
Q ss_pred CccHHHHHHHHHHHHHhcCCC--E--EEEecCCCCC--cch-hhhhHh--C---CCCeeecchhhHHHHHHH--------
Q 007443 400 SRTYDDCFIEALVMEAEKDKD--I--VVVHAGMEMD--LSL-QLFQEK--F---PERYFDVGMAEQHAVTFS-------- 459 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~--v--vvi~aDl~~~--~~l-~~f~~~--f---p~R~id~GIaE~~~vg~A-------- 459 (603)
-++-.+|+.+.+.+..+.|.. + -.+-+...|+ +++ ..|.+. + -+-+|.-|+.|--++.++
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 356778999888876665532 2 1111222222 122 223221 1 237889999999999999
Q ss_pred -HHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCC----C-eEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEec
Q 007443 460 -AGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (603)
Q Consensus 460 -aGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~l----p-V~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~P 533 (603)
.|.+..|.+-+++.=..=+.|+.|.+++. ++... - |+++++.-|-.. -.+-|+++-... .-+|-|+.|
T Consensus 107 ~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~---~a~iPvl~P 180 (1165)
T PRK09193 107 FPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKS--STLPHQSEHAFK---AAGMPVLFP 180 (1165)
T ss_pred ccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--ccchhhhHHHHH---HcCCceeCC
Confidence 55566777777665444468999999975 33222 2 333333333211 011222333233 346779999
Q ss_pred CCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 534 SDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 534 sd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
+|++|+..+.+.+++ ...-||.+|...
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g~pV~lr~~t 210 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSGLWVGMKTVT 210 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 999999999887764 355699988743
No 296
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=54.52 E-value=57 Score=35.06 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=46.8
Q ss_pred CeEEEEecHH--hHHHH-HHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--CChhhHHHHh---cCCCcEEEecCCHHH
Q 007443 467 LKPFCIIPSA--FLQRA-YDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--CGAFDITFMS---CLPNMIVMAPSDEDE 538 (603)
Q Consensus 467 ~~P~~~~~~~--Fl~ra-~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--~~~~dia~lr---~iPnl~V~~Psd~~e 538 (603)
-++++.++.+ |.+-. ++.+. -++..++||+++.-..++.. ..++. ....|++-.. .+|+..|= -.|..+
T Consensus 144 ~~~vv~~~GDGa~~~g~~~EaL~-tA~~~~LPvi~Vv~NN~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~d~~a 220 (341)
T TIGR03181 144 DNVAVTYFGDGGTSEGDFYEALN-FAGVFKAPVVFFVQNNQWAI-SVPRSKQTAAPTLAQKAIAYGIPGVQVD-GNDVLA 220 (341)
T ss_pred CCEEEEEecCCccccChHHHHHH-HHhccCCCEEEEEECCCCcc-ccchhhhhCCcCHHHHHhhCCCCEEEEC-CCCHHH
Confidence 3556666555 65432 34454 46789999999998766521 11211 1223333222 34555542 223322
Q ss_pred ----HHHHHHHHHhCCCCcEEEEe
Q 007443 539 ----LVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 539 ----~~~~l~~a~~~~~~P~~ir~ 558 (603)
++.+++.+. ..++|++|-.
T Consensus 221 v~~a~~~A~~~a~-~~~gP~lIev 243 (341)
T TIGR03181 221 VYAVTKEAVERAR-SGGGPTLIEA 243 (341)
T ss_pred HHHHHHHHHHHHH-cCCCCEEEEE
Confidence 355666663 4579999855
No 297
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=53.21 E-value=77 Score=36.61 Aligned_cols=108 Identities=14% Similarity=0.257 Sum_probs=63.7
Q ss_pred eecchhhHHHHHHHHHHhcC-----C-CeEEEEecHH--hH-HHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC---
Q 007443 446 FDVGMAEQHAVTFSAGLACG-----G-LKPFCIIPSA--FL-QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--- 513 (603)
Q Consensus 446 id~GIaE~~~vg~AaGlA~~-----G-~~P~~~~~~~--Fl-~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--- 513 (603)
+.+|.-=+ .+++|.|+|.. + -++++.+..+ |. ...++.+.. ++..+.|++++....++. -++++-
T Consensus 114 ~~~G~lG~-gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~-A~~~~~nli~IvdnN~~~-i~~~~~~~~ 190 (580)
T PRK05444 114 FGAGHSST-SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNN-AGDLKSDLIVILNDNEMS-ISPNVGALS 190 (580)
T ss_pred ECCChHHH-HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHH-HHhhCCCEEEEEECCCCc-CCCcchhhh
Confidence 44444332 34556666642 2 3556666544 32 255677665 456669999999887763 234331
Q ss_pred --CChhhH-HHHhcCCCcEEEec---CCHHHHHHHHHHHHhCCCCcEEEEe
Q 007443 514 --CGAFDI-TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRPVCFRY 558 (603)
Q Consensus 514 --~~~~di-a~lr~iPnl~V~~P---sd~~e~~~~l~~a~~~~~~P~~ir~ 558 (603)
...+++ ..++.. |+.++.+ .|..++...++.+.. .++|++|..
T Consensus 191 ~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~ 239 (580)
T PRK05444 191 NYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHV 239 (580)
T ss_pred hhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111222 244444 7776644 788888888888743 578998865
No 298
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.05 E-value=21 Score=32.73 Aligned_cols=41 Identities=34% Similarity=0.428 Sum_probs=23.9
Q ss_pred HHhhcCCe--EEeecCCCCH-HHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 324 LFEELGLY--YIGPVDGHNI-EDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 324 lfea~G~~--~ig~vDGhD~-~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
..++.|+. ++ ||-|..+ ++=+++|+++.+. .+||+|-||+|
T Consensus 53 aa~~aGl~y~~i-PV~~~~iT~~dV~~f~~Al~e-aegPVlayCrs 96 (130)
T COG3453 53 AAEAAGLTYTHI-PVTGGGITEADVEAFQRALDE-AEGPVLAYCRS 96 (130)
T ss_pred HHHhcCCceEEe-ecCCCCCCHHHHHHHHHHHHH-hCCCEEeeecC
Confidence 35667764 45 7776333 2223344443332 28999999997
No 299
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=50.31 E-value=68 Score=33.57 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=47.7
Q ss_pred eEEEEec--HHhHHH-HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCC--ChhhHHHHh---cCCCcEEEecCCHHHH
Q 007443 468 KPFCIIP--SAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMS---CLPNMIVMAPSDEDEL 539 (603)
Q Consensus 468 ~P~~~~~--~~Fl~r-a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~--~~~dia~lr---~iPnl~V~~Psd~~e~ 539 (603)
++++.++ ..|.+- .++.+.. ++..++|++++....++ +...++.. ...|++-+. .+|++.| .=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~-A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNF-AALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHH-HHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 3444444 446543 3444544 57889999999987765 22222211 123333222 3454443 22366777
Q ss_pred HHHHHHHHh---CCCCcEEEEe
Q 007443 540 VDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (603)
...++.|+. ..++|++|-.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 766666653 3578998855
No 300
>PRK05899 transketolase; Reviewed
Probab=49.76 E-value=1.5e+02 Score=34.63 Aligned_cols=88 Identities=10% Similarity=0.178 Sum_probs=54.8
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCCC-ChhhH-HHHhcCCCcEEEecC--CHHHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAPS--DEDELV 540 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH~-~~~di-a~lr~iPnl~V~~Ps--d~~e~~ 540 (603)
+.+|.+ =..|.. ..++.+.. ++..++| ++++....++. .++++.. ..+|+ ..++.+ |+.++.-. |..++.
T Consensus 152 ~v~~v~GDG~~~~g~~~Eal~~-A~~~~L~~li~v~dnN~~~-~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~ 228 (624)
T PRK05899 152 YTYVLCGDGDLMEGISHEACSL-AGHLKLGNLIVIYDDNRIS-IDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAID 228 (624)
T ss_pred eEEEEECcchhhchHHHHHHHH-HHHhCCCCEEEEEECCCCc-ccccccccccccHHHHhccC-CCeEEEECCCCHHHHH
Confidence 344444 555653 34666655 5678887 66677766662 2333321 12444 344554 88887766 899999
Q ss_pred HHHHHHHhCCCCcEEEEee
Q 007443 541 DMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 541 ~~l~~a~~~~~~P~~ir~~ 559 (603)
..++.+.. .++|++|...
T Consensus 229 ~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 229 AAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHh-cCCCEEEEEE
Confidence 99999854 4789988664
No 301
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=49.56 E-value=1.6e+02 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=22.8
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEE
Q 007443 328 LGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (603)
Q Consensus 328 ~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~ 363 (603)
-|+.++.|. |..++...++.+.+. ++|++|.
T Consensus 141 Pgl~V~~Ps---d~~d~~~~l~~a~~~--~~Pv~ir 171 (327)
T CHL00144 141 PGLQIVACS---TPYNAKGLLKSAIRS--NNPVIFF 171 (327)
T ss_pred CCCEEEEeC---CHHHHHHHHHHHHhC--CCcEEEE
Confidence 378888665 566777777777765 7999986
No 302
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=47.97 E-value=2.2e+02 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=34.2
Q ss_pred CcCcCchhh-hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCC
Q 007443 188 PFNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~G~-~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~ 254 (603)
.+.+|..=+ .++.|.|+|+. |. .++++.... +.. .+++.+.+.+.++.+.+++..+.+.
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~ 110 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGG 110 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCcc
Confidence 355665433 34667777766 54 555555533 322 6788888888776334444444443
No 303
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.54 E-value=2.6e+02 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC
Q 007443 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (603)
Q Consensus 199 s~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~ 253 (603)
-+|-|+|.+. ++-..+++..|=|.++ ..-++..|...+.||++|.-+..
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 4566666653 3444445555666664 33577788877899999986554
No 304
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=46.08 E-value=1e+02 Score=33.58 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCe--EEEEecHHhH--HHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhH----HHHhcC
Q 007443 454 HAVTFSAGLACGGLK--PFCIIPSAFL--QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDI----TFMSCL 525 (603)
Q Consensus 454 ~~vg~AaGlA~~G~~--P~~~~~~~Fl--~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~di----a~lr~i 525 (603)
+++|.|-++-..|-. ..+.+|.+=. +-.|-.-.|-++..++||+|++-..++.-.---..|...++ +.--.|
T Consensus 144 ~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygi 223 (358)
T COG1071 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGI 223 (358)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCC
Confidence 444544444455633 3333355422 33333333556889999999997776631111121333322 222378
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 007443 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
|+++| -=.|...+...++.|++ ...+|++|-.
T Consensus 224 pgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 224 PGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred CeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99998 66777777777777764 3568999844
No 305
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=44.15 E-value=1.8e+02 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=34.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCC
Q 007443 193 HGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 193 ~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~ 254 (603)
|=..+..+|-|.+.+ +.+ .+++.-|-|..+ ...+|-.|...+.|+++|+-+-..
T Consensus 49 ~E~~A~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~ 102 (160)
T cd07034 49 SEHAAAEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPG 102 (160)
T ss_pred CHHHHHHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCC
Confidence 434445556666654 333 445555676664 456777887777999999977553
No 306
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=38.41 E-value=1.3e+02 Score=32.51 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=46.7
Q ss_pred CeEEEEecHH--hHH-HHHHHHHHHhhcCCCCeEEEEeCCCC-CCC--CCCCCC-ChhhHHHHhcCCCcEEEecCCHHHH
Q 007443 467 LKPFCIIPSA--FLQ-RAYDQVVNDVDQQRLPVRFVITSAGL-VGS--DGPTQC-GAFDITFMSCLPNMIVMAPSDEDEL 539 (603)
Q Consensus 467 ~~P~~~~~~~--Fl~-ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~--dG~tH~-~~~dia~lr~iPnl~V~~Psd~~e~ 539 (603)
-++++.++.+ |.+ ..++.+ +-++..++||++++-..++ .+. ...+.. ...+.+-.-.+|++.|=- .|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Eal-n~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFECL-NMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHHH-HHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeC-CCHHHH
Confidence 3555555544 432 223334 3457799999999977774 121 111111 122333333577777644 355444
Q ss_pred H----HHHHHHHhCCCCcEEEEe
Q 007443 540 V----DMVATVASIDDRPVCFRY 558 (603)
Q Consensus 540 ~----~~l~~a~~~~~~P~~ir~ 558 (603)
. .+++.+. ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar-~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERAR-QGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEE
Confidence 4 4555553 3578998855
No 307
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=38.09 E-value=3.3e+02 Score=29.51 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEE
Q 007443 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (603)
Q Consensus 329 G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~ 363 (603)
|+.++.|.| ..++..+++.+.+. ++|++|.
T Consensus 173 n~~V~~Psd---~~e~~~~l~~a~~~--~~P~~i~ 202 (355)
T PTZ00182 173 GLKVVAPSD---PEDAKGLLKAAIRD--PNPVVFF 202 (355)
T ss_pred CCEEEeeCC---HHHHHHHHHHHHhC--CCcEEEE
Confidence 788886664 66667777777665 7999885
No 308
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=37.14 E-value=58 Score=40.72 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=67.9
Q ss_pred CeeecchhhHHHHHHHHHHh---------cCCCeEEEEecHHhHHHHHHHHHHHhh-cC--CCC-eEEEEeCCCCCCCCC
Q 007443 444 RYFDVGMAEQHAVTFSAGLA---------CGGLKPFCIIPSAFLQRAYDQVVNDVD-QQ--RLP-VRFVITSAGLVGSDG 510 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA---------~~G~~P~~~~~~~Fl~ra~dQi~~~~a-~~--~lp-V~~~~~~~G~~g~dG 510 (603)
-+|.-|+.|--++++..|-- ..|.+-+++.=..=+.|+.|.+++..+ +. +-- |+++++.-|-.. -
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--S 163 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--S 163 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc--c
Confidence 67889999999955555544 455555555433335899999998531 21 122 333333333211 1
Q ss_pred CCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEeec
Q 007443 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (603)
Q Consensus 511 ~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~~r 560 (603)
.+-|+++-... .-+|-|+.|+|++|+..+...+++ ...-||.+|...
T Consensus 164 q~eqdSr~~~~---~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t 213 (1186)
T PRK13029 164 SVAHQSDHTFI---AWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVT 213 (1186)
T ss_pred cCHHHHHHHHH---HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEee
Confidence 11122333233 346779999999999998887764 345699988744
No 309
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=37.00 E-value=2.6e+02 Score=32.14 Aligned_cols=150 Identities=22% Similarity=0.291 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEe--cHHhHHH
Q 007443 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQR 480 (603)
Q Consensus 403 ~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~--~~~Fl~r 480 (603)
|..+|.++| .+..=+=+|+++-. +++-|.-...++++=-..+=|.|..+-=+|.|+|+.-.+||+-+ -.+=...
T Consensus 10 ~a~v~~eeL---~r~GV~~vvicPGS-RSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~AN 85 (566)
T COG1165 10 WARVFLEEL---ARLGVRDVVICPGS-RSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVAN 85 (566)
T ss_pred HHHHHHHHH---HHcCCcEEEECCCC-CCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhh
Confidence 444444444 34445667887753 45656544566676667899999999999999999998888876 3333456
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCChhhHHHHhcCCCcEEE--ecCCHHHHHHHHHHHHh--------
Q 007443 481 AYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVM--APSDEDELVDMVATVAS-------- 548 (603)
Q Consensus 481 a~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~~dia~lr~iPnl~V~--~Psd~~e~~~~l~~a~~-------- 548 (603)
.|-.|.. +.+.+.|.++....--. .+ -| .-|.+++..++.+-|+..+= .|.+..++.+.+++...
T Consensus 86 l~PAViE-A~~srvpLIVLTADRP~EL~~-~G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~ 162 (566)
T COG1165 86 LYPAVIE-ANLSRVPLIVLTADRPPELRG-CG-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQART 162 (566)
T ss_pred ccHHHHh-hhhcCCceEEEeCCCCHHHhc-CC-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 6777765 58899999988754322 11 11 34678888888888877653 57777777766665432
Q ss_pred CCCCcEEEEee
Q 007443 549 IDDRPVCFRYP 559 (603)
Q Consensus 549 ~~~~P~~ir~~ 559 (603)
...|||=|-.|
T Consensus 163 ~~~GpVHiN~P 173 (566)
T COG1165 163 PHAGPVHINVP 173 (566)
T ss_pred CCCCceEecCC
Confidence 35678776444
No 310
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=36.64 E-value=2.7e+02 Score=26.30 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=33.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEE--cCCccccchHHHHHHHhhhcCCCEEEEEECCCC
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVI--SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~vi--GDGal~eG~~~EAln~A~~~~~nlivIlndN~~ 254 (603)
.+-|=..+.-+|-|.+.+. + ..+|++ |=|.++ ..-+|..|...+.||++|.-+...
T Consensus 40 ~~rhE~~A~~mA~gyar~t-----~-~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~ 97 (162)
T cd07038 40 GNCNELNAGYAADGYARVK-----G-LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPST 97 (162)
T ss_pred eeCCHHHHHHHHHHHHHhh-----C-CEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCc
Confidence 3444445555677777652 2 344443 555443 335777887777999999876553
No 311
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=35.39 E-value=2.7e+02 Score=32.68 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=53.3
Q ss_pred hHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 230 QAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 230 ~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
...-|+..|+-.+.|+++|+.-..+.. +.|||+.-. ++.++.
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgv---GEDGPTHqP---------------------------------iEqLa~-- 481 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGV---GEDGPTHQP---------------------------------VEQLAS-- 481 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceec---CCCCCCCCc---------------------------------HHHHHH--
Confidence 566789999999999999999988765 447765421 111110
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~ 365 (603)
+| .=-|+.+++|.|++ +...+++.+.+. .++|++|...
T Consensus 482 ---LR-----------aiPN~~V~RPaD~~---Et~~aw~~Al~~-~~gPt~Lilt 519 (663)
T COG0021 482 ---LR-----------AIPNLSVIRPADAN---ETAAAWKYALER-KDGPTALILT 519 (663)
T ss_pred ---hh-----------ccCCceeEecCChH---HHHHHHHHHHhc-CCCCeEEEEe
Confidence 11 11478899888755 455666666654 2899998764
No 312
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=33.25 E-value=3.5e+02 Score=29.23 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEEC
Q 007443 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILND 251 (603)
Q Consensus 196 ~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlnd 251 (603)
.++++|+|.++| ..++++...|..+. ..+|.|..|+-...|+++++-.
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 356778888887 34577788888887 8899999999988887776544
No 313
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=28.99 E-value=2e+02 Score=31.25 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCC-C--CCChhhHH-HHhcCCCcEEEecCCHHHHHHHHHHHHh--CCCCc
Q 007443 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP-T--QCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRP 553 (603)
Q Consensus 480 ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~-t--H~~~~dia-~lr~iPnl~V~~Psd~~e~~~~l~~a~~--~~~~P 553 (603)
..++.+.. ++..++||++++...++. .+. + .+...+++ ....+|++.| -=-|..++...++.|+. +..+|
T Consensus 176 ~~~Ealn~-A~~~~lPvvfvveNN~~a--ist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP 251 (362)
T PLN02269 176 QLFEALNI-AALWDLPVIFVCENNHYG--MGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGP 251 (362)
T ss_pred HHHHHHHH-hhccCcCEEEEEeCCCEe--ccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34555544 578999999999877652 121 1 11222221 1124677665 44556666666666543 13789
Q ss_pred EEEEe
Q 007443 554 VCFRY 558 (603)
Q Consensus 554 ~~ir~ 558 (603)
++|-.
T Consensus 252 ~lIe~ 256 (362)
T PLN02269 252 IVLEM 256 (362)
T ss_pred EEEEE
Confidence 99865
No 314
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=28.67 E-value=3.1e+02 Score=29.07 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred eEEEEecHH--hHHHH-HHHHHHHhhcCCCCeEEEEeCCCCCCCCCCC----CC-ChhhHHHHhcCCCcEEEecCCHHHH
Q 007443 468 KPFCIIPSA--FLQRA-YDQVVNDVDQQRLPVRFVITSAGLVGSDGPT----QC-GAFDITFMSCLPNMIVMAPSDEDEL 539 (603)
Q Consensus 468 ~P~~~~~~~--Fl~ra-~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~t----H~-~~~dia~lr~iPnl~V~~Psd~~e~ 539 (603)
++++.++.+ |.+-. ++.+. -++..++|++++....++ |...++ .. ...+++-.-.+|++.| -=.|+.++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn-~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFN-MAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHH-HhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 445555444 64322 34443 357889999999877664 211111 11 1233333335666654 33456666
Q ss_pred HHHHHHHHh---CCCCcEEEEe
Q 007443 540 VDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (603)
...++.|+. ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 666555543 4578998855
No 315
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=27.46 E-value=1.2e+02 Score=27.97 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=23.6
Q ss_pred HhhcCCeEEe-ecCCCCH-HHHHHHHHHHHhcCCCCcEEEEEEeec
Q 007443 325 FEELGLYYIG-PVDGHNI-EDLISVLQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 325 fea~G~~~ig-~vDGhD~-~~l~~al~~a~~~~~~gP~lI~v~T~k 368 (603)
.+..|+.|+. |+....+ ++-.++|.++.+. .++|+++||+|=|
T Consensus 53 a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~-~~~pvL~HC~sG~ 97 (135)
T TIGR01244 53 AEAAGVTYHHQPVTAGDITPDDVETFRAAIGA-AEGPVLAYCRSGT 97 (135)
T ss_pred HHHCCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCCh
Confidence 4557877752 3333322 2223444444332 2799999998744
No 316
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=26.85 E-value=85 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=30.3
Q ss_pred CeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECC
Q 007443 215 ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS 252 (603)
Q Consensus 215 ~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN 252 (603)
..-|++.++|.|+.|.+.+-+..-.....|.|+++...
T Consensus 80 ~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~ 117 (126)
T PF10996_consen 80 GPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQ 117 (126)
T ss_dssp SSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS-
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCC
Confidence 56788999999999999888877766668888876543
No 317
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.71 E-value=81 Score=31.41 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHhc-CCCEEEEecCCCCCcch--hhhhHhCCCCeeec
Q 007443 401 RTYDDCFIEALVMEAEK-DKDIVVVHAGMEMDLSL--QLFQEKFPERYFDV 448 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~-d~~vvvi~aDl~~~~~l--~~f~~~fp~R~id~ 448 (603)
...+++|-++|.+.++. .+++|++. |-..+ ..|-++|+.|.+|.
T Consensus 61 ~~~r~~~d~~l~~~l~~~~~dlvvLA----GyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 61 FPSREAFDRALVEALDEYGPDLVVLA----GYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEc----chHHHcCHHHHHHhhcceEec
Confidence 34578888888876654 68999983 22233 56889999999885
No 318
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=24.01 E-value=6.9e+02 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=32.2
Q ss_pred chhhhHHHHHHHHHHHHHcCC-CCeEEEEEcCCccc----cchHHHHHHHhhhcC
Q 007443 193 HGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTM----AGQAYEAMSNAGYLD 242 (603)
Q Consensus 193 ~~G~~is~A~G~A~A~~l~g~-~~~Vv~viGDGal~----eG~~~EAln~A~~~~ 242 (603)
++..+|=.|..+..-.+.+++ ...++++|-||=.+ .|.-.|++..|....
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~ 209 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLR 209 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHh
Confidence 455666555555444444554 46788999999866 454567777777654
No 319
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=22.98 E-value=2.7e+02 Score=31.10 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=44.8
Q ss_pred eEEEEecHH--hHHH-HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC---CChhhHH---HHhcCCCcEEEecCCHHH
Q 007443 468 KPFCIIPSA--FLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ---CGAFDIT---FMSCLPNMIVMAPSDEDE 538 (603)
Q Consensus 468 ~P~~~~~~~--Fl~r-a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH---~~~~dia---~lr~iPnl~V~~Psd~~e 538 (603)
.+++.++.+ |.+- .++.+.. ++..++||+|+.-..++. .|.++ ....|++ -.-.+|++.|= =.|..+
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~-A~~~~LPvIfVV~NN~ya--ig~~~~~~t~~~dia~~A~a~G~~~~~VD-G~D~~a 299 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNM-AALWKLPIVFVVENNLWA--IGMSHLRATSDPEIWKKGPAFGMPGVHVD-GMDVLK 299 (433)
T ss_pred CEEEEEECCCccccChHHHHHHH-HHHhCCCEEEEEeCCCEe--ecceeeeccCCCCHHHHHHhcCCcEEEEC-CCCHHH
Confidence 455555554 4322 2455544 578999999998766541 11111 1122332 22246666542 234444
Q ss_pred HH----HHHHHHHhCCCCcEEEEe
Q 007443 539 LV----DMVATVASIDDRPVCFRY 558 (603)
Q Consensus 539 ~~----~~l~~a~~~~~~P~~ir~ 558 (603)
+. .+++.+. ..++|++|-.
T Consensus 300 v~~a~~~A~~~Ar-~g~gP~LIe~ 322 (433)
T PLN02374 300 VREVAKEAIERAR-RGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEE
Confidence 44 4455553 3578998854
No 320
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=22.57 E-value=90 Score=23.05 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=13.9
Q ss_pred hhccCCHHHHHHHHHHH
Q 007443 90 RLKSLTIKELKQLAVEI 106 (603)
Q Consensus 90 ~~k~l~~~~L~~la~~i 106 (603)
+|++++..||..+|.++
T Consensus 1 eL~~~~~~eL~~iAk~l 17 (43)
T PF07498_consen 1 ELKSMTLSELREIAKEL 17 (43)
T ss_dssp HHHCS-HHHHHHHHHCT
T ss_pred CcccCCHHHHHHHHHHc
Confidence 57899999999999875
No 321
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=21.95 E-value=3e+02 Score=29.83 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcC--CCeEEEEe-cHHhH---HHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCC---ChhhHHHH
Q 007443 452 EQHAVTFSAGLACG--GLKPFCII-PSAFL---QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC---GAFDITFM 522 (603)
Q Consensus 452 E~~~vg~AaGlA~~--G~~P~~~~-~~~Fl---~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~---~~~dia~l 522 (603)
+|-=+|..+++|+. +-.-++.. |.+=. -..|+.+-+ +++++|||+|+.-..++. -|.+|. ...| -+.
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM-A~LW~LP~IFvCENN~yG--MGTs~~Rasa~te-yyk 244 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM-AALWKLPVIFVCENNHYG--MGTSAERASASTE-YYK 244 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH-HHHhCCCEEEEEccCCCc--cCcchhhhhcChH-HHh
Confidence 34445566666653 44444444 76643 245666555 478999999999766552 244432 2233 233
Q ss_pred h--cCCCcEEEecCCHHHHHH----HHHHHHhCCCCcEEEEe
Q 007443 523 S--CLPNMIVMAPSDEDELVD----MVATVASIDDRPVCFRY 558 (603)
Q Consensus 523 r--~iPnl~V~~Psd~~e~~~----~l~~a~~~~~~P~~ir~ 558 (603)
| .|||+.| -=-|.--++. +.++++ ...+|.++-+
T Consensus 245 RG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~-~g~GPilmE~ 284 (394)
T KOG0225|consen 245 RGDYIPGLKV-DGMDVLAVREATKFAKKYAL-EGKGPILMEM 284 (394)
T ss_pred ccCCCCceEE-CCcchhhHHHHHHHHHHHHh-cCCCCEEEEE
Confidence 3 5798876 1123333333 344442 3488998744
No 322
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=20.17 E-value=2.4e+02 Score=29.71 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=60.3
Q ss_pred Cee--ecchhhHHHHHHHHHHhc----CCCeEEEEe-cHHhH--H-HHHHHHHHHhhcCCCCeEEEEeCCCC--C--CCC
Q 007443 444 RYF--DVGMAEQHAVTFSAGLAC----GGLKPFCII-PSAFL--Q-RAYDQVVNDVDQQRLPVRFVITSAGL--V--GSD 509 (603)
Q Consensus 444 R~i--d~GIaE~~~vg~AaGlA~----~G~~P~~~~-~~~Fl--~-ra~dQi~~~~a~~~lpV~~~~~~~G~--~--g~d 509 (603)
+++ +..+..| +..|+|.|. .|-+.++.. |.+=. + ..++.+ |-++..++||+|++-..++ + ...
T Consensus 95 ~~~~~~~~vg~~--~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~~lPvifvveNN~~aist~~~~ 171 (300)
T PF00676_consen 95 NILGASSPVGAQ--VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALWKLPVIFVVENNQYAISTPTEE 171 (300)
T ss_dssp TBEEEESSTTTH--HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHTTTSEEEEEEEESEETTEEHHH
T ss_pred eeeecccccccc--CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhccCCeEEEEecCCcccccCccc
Confidence 454 3344444 445555554 354433333 44432 3 334444 4468899999999976665 2 111
Q ss_pred CCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 007443 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 510 G~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
...-..+.|.+..-.+|++.| -=.|+.++...++.|++ ...+|++|-.
T Consensus 172 ~~~~~~~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 172 QTASPDIADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp HCSSSTSGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred cccccchhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111122445444446777775 45777777777776654 3578998855
No 323
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=20.13 E-value=1.2e+02 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=28.9
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCc
Q 007443 529 IVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIV 564 (603)
Q Consensus 529 ~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~ 564 (603)
.|+.|.+.+|+..++++|.. .+-|+.+|-....+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~ 37 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWT 37 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSS
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcc
Confidence 58999999999999999954 578998887766543
Done!