Query 007443
Match_columns 603
No_of_seqs 344 out of 2396
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 01:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 4.8E-97 2E-101 841.5 43.8 512 76-602 7-524 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.5E-96 1E-100 833.5 44.9 510 75-601 4-521 (621)
3 3l84_A Transketolase; TKT, str 100.0 2.5E-86 8.6E-91 749.7 41.3 446 94-602 1-544 (632)
4 3rim_A Transketolase, TK; TPP, 100.0 3.8E-85 1.3E-89 745.5 39.8 449 96-602 19-603 (700)
5 3kom_A Transketolase; rossmann 100.0 1.1E-84 3.6E-89 740.5 36.7 448 97-602 4-568 (663)
6 3mos_A Transketolase, TK; thia 100.0 6.3E-84 2.2E-88 730.7 42.8 450 90-602 4-517 (616)
7 3m49_A Transketolase; alpha-be 100.0 1.1E-84 3.9E-89 741.9 35.7 459 89-602 19-595 (690)
8 1itz_A Transketolase; calvin c 100.0 2.1E-82 7.1E-87 725.4 43.9 458 87-602 4-581 (675)
9 3uk1_A Transketolase; structur 100.0 2.8E-83 9.6E-88 731.9 34.7 445 99-602 45-616 (711)
10 1gpu_A Transketolase; transfer 100.0 4.9E-81 1.7E-85 714.6 41.5 445 98-602 6-573 (680)
11 2r8o_A Transketolase 1, TK 1; 100.0 2E-80 6.9E-85 708.7 40.3 446 99-602 4-568 (669)
12 2e6k_A Transketolase; structur 100.0 6.7E-80 2.3E-84 702.4 41.3 443 101-602 10-560 (651)
13 2qtc_A Pyruvate dehydrogenase 100.0 4E-79 1.4E-83 710.2 43.3 513 78-602 56-742 (886)
14 1r9j_A Transketolase; domains, 100.0 1.8E-79 6.2E-84 700.5 39.7 446 98-602 5-565 (673)
15 3ahc_A Phosphoketolase, xylulo 100.0 1.8E-54 6.3E-59 495.6 39.1 426 116-602 80-679 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 3.7E-50 1.3E-54 468.9 38.6 452 92-599 193-828 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 7.5E-48 2.6E-52 447.2 30.6 453 92-601 113-766 (868)
18 2xt6_A 2-oxoglutarate decarbox 100.0 6.9E-47 2.4E-51 448.8 33.0 453 92-601 358-1011(1113)
19 1ik6_A Pyruvate dehydrogenase; 100.0 1.6E-41 5.6E-46 362.3 18.1 233 365-602 10-268 (369)
20 2ozl_B PDHE1-B, pyruvate dehyd 100.0 2.7E-38 9.3E-43 334.3 18.8 201 399-602 13-235 (341)
21 1w85_B Pyruvate dehydrogenase 100.0 1.9E-37 6.3E-42 325.8 22.0 198 401-602 3-220 (324)
22 1umd_B E1-beta, 2-OXO acid deh 100.0 3.3E-37 1.1E-41 323.8 20.4 199 400-602 3-221 (324)
23 2bfd_B 2-oxoisovalerate dehydr 100.0 2.8E-37 9.6E-42 326.7 16.8 200 399-602 19-238 (342)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 8.8E-37 3E-41 322.4 19.4 199 400-602 4-238 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 6.9E-30 2.4E-34 272.5 25.7 231 90-376 29-277 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 3.2E-25 1.1E-29 236.3 25.4 239 77-375 21-275 (368)
27 2bfd_A 2-oxoisovalerate dehydr 99.9 2.1E-24 7.1E-29 232.4 25.2 241 79-376 34-295 (400)
28 2ozl_A PDHE1-A type I, pyruvat 99.9 6.8E-24 2.3E-28 225.6 23.5 231 87-376 24-271 (365)
29 1qs0_A 2-oxoisovalerate dehydr 99.9 1.4E-22 4.9E-27 218.3 24.1 230 91-377 68-316 (407)
30 4feg_A Pyruvate oxidase; carba 99.5 2.4E-14 8.3E-19 161.8 15.0 178 125-374 371-552 (603)
31 2uz1_A Benzaldehyde lyase; thi 99.5 4.1E-14 1.4E-18 158.6 12.6 174 125-368 370-546 (563)
32 1ozh_A ALS, acetolactate synth 99.5 2.6E-13 8.8E-18 152.3 15.6 174 125-371 371-546 (566)
33 1ybh_A Acetolactate synthase, 99.5 1.7E-13 5.6E-18 154.5 13.2 140 189-374 423-564 (590)
34 1t9b_A Acetolactate synthase, 99.4 5.1E-13 1.8E-17 152.9 14.7 179 124-374 460-643 (677)
35 3eya_A Pyruvate dehydrogenase 99.4 1.5E-12 5.1E-17 145.5 17.0 128 190-371 404-532 (549)
36 2pgn_A Cyclohexane-1,2-dione h 99.4 1.1E-12 3.6E-17 147.9 13.9 132 190-375 422-554 (589)
37 2iht_A Carboxyethylarginine sy 99.4 6.4E-13 2.2E-17 149.3 11.5 127 190-368 434-561 (573)
38 1q6z_A BFD, BFDC, benzoylforma 99.4 8.4E-13 2.9E-17 146.7 12.1 124 192-368 401-525 (528)
39 2pan_A Glyoxylate carboligase; 99.4 1.2E-12 4.1E-17 148.2 13.5 140 189-371 439-583 (616)
40 2vk8_A Pyruvate decarboxylase 99.3 1.4E-12 4.9E-17 146.0 10.3 129 189-369 410-543 (563)
41 1ovm_A Indole-3-pyruvate decar 99.3 2.2E-12 7.5E-17 144.1 11.5 124 189-369 405-533 (552)
42 1v5e_A Pyruvate oxidase; oxido 99.3 3E-12 1E-16 144.3 12.3 130 189-370 410-541 (590)
43 2vbi_A Pyruvate decarboxylase; 99.3 7.6E-12 2.6E-16 140.2 12.8 123 190-370 407-535 (566)
44 2vbf_A Branched-chain alpha-ke 99.3 8.7E-12 3E-16 139.9 12.4 124 190-370 423-553 (570)
45 2wvg_A PDC, pyruvate decarboxy 99.3 1.6E-11 5.3E-16 137.8 12.4 123 190-370 411-543 (568)
46 2q28_A Oxalyl-COA decarboxylas 99.2 1.2E-10 4E-15 130.5 18.1 173 125-370 370-546 (564)
47 2nxw_A Phenyl-3-pyruvate decar 99.2 1.1E-11 3.8E-16 139.0 8.3 122 190-369 420-543 (565)
48 2c31_A Oxalyl-COA decarboxylas 99.2 7.6E-11 2.6E-15 132.2 14.4 125 189-370 423-549 (568)
49 1yd7_A 2-keto acid:ferredoxin 99.2 2.8E-11 9.7E-16 130.0 9.1 153 401-560 23-187 (395)
50 2x7j_A 2-succinyl-5-enolpyruvy 99.1 3.4E-11 1.2E-15 136.1 7.0 129 190-370 453-582 (604)
51 3hww_A 2-succinyl-5-enolpyruvy 99.1 1.1E-10 3.7E-15 130.7 8.2 125 190-369 415-540 (556)
52 3lq1_A 2-succinyl-5-enolpyruvy 99.0 3E-10 1E-14 127.6 7.0 122 197-371 441-563 (578)
53 2c42_A Pyruvate-ferredoxin oxi 98.3 1.2E-05 4.2E-10 97.2 17.6 114 443-561 54-173 (1231)
54 2c42_A Pyruvate-ferredoxin oxi 98.2 3E-06 1E-10 102.5 11.9 116 214-368 953-1070(1231)
55 1v5e_A Pyruvate oxidase; oxido 91.3 0.53 1.8E-05 52.5 9.4 114 447-563 47-166 (590)
56 1ozh_A ALS, acetolactate synth 90.1 2.7 9.1E-05 46.5 13.7 152 401-561 11-170 (566)
57 2iht_A Carboxyethylarginine sy 87.6 1.9 6.4E-05 47.8 10.1 112 448-562 53-172 (573)
58 2nxw_A Phenyl-3-pyruvate decar 87.1 5.4 0.00018 44.0 13.5 154 399-562 19-187 (565)
59 1t9b_A Acetolactate synthase, 86.1 2.6 8.9E-05 47.8 10.4 151 401-561 82-242 (677)
60 2uz1_A Benzaldehyde lyase; thi 85.4 2.5 8.5E-05 46.6 9.6 151 401-561 4-164 (563)
61 1ybh_A Acetolactate synthase, 85.3 2.3 7.8E-05 47.3 9.3 112 447-562 54-173 (590)
62 2pgn_A Cyclohexane-1,2-dione h 85.2 2.1 7.3E-05 47.5 9.0 115 444-562 45-166 (589)
63 2pan_A Glyoxylate carboligase; 83.8 9 0.00031 42.6 13.4 151 402-562 28-189 (616)
64 2vbi_A Pyruvate decarboxylase; 82.8 22 0.00074 39.0 15.8 152 401-563 3-171 (566)
65 2wvg_A PDC, pyruvate decarboxy 82.8 14 0.0005 40.5 14.4 111 448-562 46-170 (568)
66 1q6z_A BFD, BFDC, benzoylforma 81.6 4.8 0.00016 43.9 9.9 113 447-562 42-162 (528)
67 3hww_A 2-succinyl-5-enolpyruvy 80.5 24 0.00084 38.6 15.2 147 407-561 10-171 (556)
68 2x7j_A 2-succinyl-5-enolpyruvy 78.6 4.5 0.00015 45.0 8.5 112 448-562 74-199 (604)
69 4feg_A Pyruvate oxidase; carba 78.2 9.7 0.00033 42.3 11.0 154 400-562 10-172 (603)
70 2q28_A Oxalyl-COA decarboxylas 77.1 5 0.00017 44.2 8.2 153 401-562 8-170 (564)
71 2vk8_A Pyruvate decarboxylase 77.1 11 0.00038 41.3 11.0 111 448-562 47-171 (563)
72 3lq1_A 2-succinyl-5-enolpyruvy 77.0 23 0.00079 39.0 13.7 114 444-561 51-178 (578)
73 2c31_A Oxalyl-COA decarboxylas 76.8 5.1 0.00017 44.2 8.2 154 400-562 9-172 (568)
74 3mos_A Transketolase, TK; thia 76.4 11 0.00039 42.1 10.9 61 188-255 357-418 (616)
75 2vbf_A Branched-chain alpha-ke 75.8 20 0.0007 39.3 12.7 150 401-562 25-191 (570)
76 3eya_A Pyruvate dehydrogenase 75.0 11 0.00038 41.3 10.2 112 448-562 46-163 (549)
77 1ovm_A Indole-3-pyruvate decar 73.3 25 0.00084 38.4 12.5 152 401-562 5-171 (552)
78 1qs0_B 2-oxoisovalerate dehydr 72.5 13 0.00045 38.1 9.5 110 188-366 54-175 (338)
79 2ozl_B PDHE1-B, pyruvate dehyd 71.9 16 0.00056 37.6 10.1 58 188-254 64-132 (341)
80 1w85_B Pyruvate dehydrogenase 67.5 19 0.00064 36.7 9.4 55 188-250 52-117 (324)
81 2bfd_B 2-oxoisovalerate dehydr 65.4 20 0.00068 36.9 9.1 56 188-251 69-136 (342)
82 3l84_A Transketolase; TKT, str 64.7 37 0.0013 38.1 11.7 61 188-255 384-445 (632)
83 3kom_A Transketolase; rossmann 63.8 43 0.0015 37.8 12.1 62 187-255 404-466 (663)
84 3m49_A Transketolase; alpha-be 63.7 23 0.0008 40.2 9.9 90 467-559 173-270 (690)
85 1w85_A Pyruvate dehydrogenase 63.5 15 0.00051 38.4 7.7 89 467-558 165-263 (368)
86 1ik6_A Pyruvate dehydrogenase; 60.4 28 0.00096 36.3 9.2 58 188-253 100-168 (369)
87 2bfd_A 2-oxoisovalerate dehydr 59.0 14 0.00048 39.1 6.6 108 448-558 161-283 (400)
88 2o1s_A 1-deoxy-D-xylulose-5-ph 56.9 44 0.0015 37.3 10.5 59 188-254 363-423 (621)
89 1r9j_A Transketolase; domains, 56.2 39 0.0013 38.2 10.1 89 468-559 150-247 (673)
90 1gpu_A Transketolase; transfer 55.9 28 0.00096 39.4 8.8 89 468-559 150-247 (680)
91 2r8o_A Transketolase 1, TK 1; 53.7 34 0.0012 38.6 9.0 89 468-559 148-244 (669)
92 1umd_A E1-alpha, 2-OXO acid de 51.9 37 0.0013 35.3 8.4 108 447-558 142-265 (367)
93 1umd_B E1-beta, 2-OXO acid deh 51.6 63 0.0022 32.7 10.0 55 188-250 53-118 (324)
94 3uk1_A Transketolase; structur 50.5 39 0.0013 38.5 8.8 88 468-559 189-284 (711)
95 1qs0_A 2-oxoisovalerate dehydr 48.2 26 0.00089 37.1 6.5 90 466-558 203-303 (407)
96 2e6k_A Transketolase; structur 42.4 72 0.0024 35.8 9.3 89 467-559 151-247 (651)
97 1itz_A Transketolase; calvin c 40.9 80 0.0027 35.6 9.5 90 467-559 160-258 (675)
98 2ozl_A PDHE1-A type I, pyruvat 40.5 32 0.0011 35.8 5.7 89 467-558 163-259 (365)
99 3rim_A Transketolase, TK; TPP, 40.5 67 0.0023 36.5 8.7 89 468-559 170-266 (700)
100 2o1x_A 1-deoxy-D-xylulose-5-ph 32.3 1.1E+02 0.0038 34.0 8.8 32 527-559 252-286 (629)
101 2qtc_A Pyruvate dehydrogenase 24.6 3.4E+02 0.012 31.6 11.3 65 466-532 221-291 (886)
102 3kp1_E D-ornithine aminomutase 22.7 80 0.0027 27.7 4.1 49 88-139 11-60 (121)
103 3gxh_A Putative phosphatase (D 22.3 1E+02 0.0036 27.4 5.2 42 324-366 62-106 (157)
104 1yd7_A 2-keto acid:ferredoxin 21.2 2E+02 0.0067 30.0 7.7 53 193-253 72-124 (395)
105 2f46_A Hypothetical protein; s 20.1 1E+02 0.0035 27.3 4.6 40 325-366 68-111 (156)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=4.8e-97 Score=841.51 Aligned_cols=512 Identities=33% Similarity=0.550 Sum_probs=428.4
Q ss_pred CCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHHH
Q 007443 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (603)
Q Consensus 76 ~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~ 155 (603)
.+.||+|++|+.|.++|+++.++|+++|++||+.+++++++++||+++++|++|++.+||++|+.|+|+||||+|||+|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHH
Q 007443 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (603)
Q Consensus 156 ~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAl 235 (603)
|++++|+.+.+.++|+++|++|||++.+++++.+++||+|+++|+|+|+|+|+++++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhc
Q 007443 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (603)
Q Consensus 236 n~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (603)
|+|+.++.|++||+|||++++ +++++.++.++++++..+.|..++.+.+++++.+|.++.+...++.+++|+
T Consensus 167 ~~A~~~~~pli~IvnnN~~~i--------~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMSI--------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBSS--------SBCCSSHHHHC----------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCCCC--------CCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 999999999999999999998 567787777888888888888888877777665665554445555566666
Q ss_pred cCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCCCCC
Q 007443 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASDSNS 393 (603)
Q Consensus 316 ~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~~~~ 393 (603)
++.|.+..+|++|||+++++|||||++++.++++++++. ++|++||++|.||+||+++|+++ |||...-..+ +.
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~--~~ 314 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPA--TG 314 (629)
T ss_dssp -----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS--SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTT--TC
T ss_pred hcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCChhHcCCcccccCccCCcC--cC
Confidence 555533389999999999999999999999999999876 89999999999999999998776 7875321111 01
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 394 LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 394 ~p~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
.+...+..+|+++|+++|.+++++|++|+++++|+.+++++.+|+++||+||||+||+|++|+++|+|+|+.|++||+++
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 394 (629)
T 2o1x_A 315 EYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI 394 (629)
T ss_dssp CBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEe
Confidence 10011257999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCc
Q 007443 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P 553 (603)
|++|++|++|||++++|++++||+++++++|++|+||+|||+.+|+++||++|||+|++|+|++|++.++++|+.. ++|
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~P 473 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGP 473 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-SSC
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999999999988899999999999999999999999999999999999999764 899
Q ss_pred EEEEeecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 554 VCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 554 ~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
++||++|+.++..++ ...+.+++||++ |.|+||||+|.+++.|+++.
T Consensus 474 v~i~~~r~~~~~~~~--~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa 524 (629)
T 2o1x_A 474 FAIRYPRGNTAQVPA--GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAA 524 (629)
T ss_dssp EEEECCSSBCCCCCT--TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCcc--cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHH
Confidence 999999987643222 224668899975 89999999999999999975
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-96 Score=833.55 Aligned_cols=510 Identities=41% Similarity=0.653 Sum_probs=411.1
Q ss_pred CCCCCcCccCCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcCCCcccCccchHHHHHHHHhhccCCCceeeecCCchHH
Q 007443 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTY 154 (603)
Q Consensus 75 ~~~~~~~l~~i~~p~~~k~l~~~~L~~la~~iR~~ii~~v~~~gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY 154 (603)
+.|.+++|++|++|.|+|+++.++|+++|++||+.+++++++++||+++++|++|++++||++|+.|+|+||||+||++|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 44788999999999999999999999999999999999999899999999999999999999998899999999999999
Q ss_pred HHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHH
Q 007443 155 AHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (603)
Q Consensus 155 ~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EA 234 (603)
+|++++|+.+.+.++|+++|++|||++.+++++.+++||+|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhh
Q 007443 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (603)
Q Consensus 235 ln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (603)
||+|++++.|+++|+|||++++ +++++.++.++.+++.++.|..+|.+.+++++..+ .+.++..+..++++
T Consensus 164 L~~A~~~~~pli~vvnnN~~~i--------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p-~~~~~~~r~~~~~~ 234 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEMSI--------SENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIK 234 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCccc--------CCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccc-hHHHHHHHHHHHhh
Confidence 9999999999999999999998 55777777777788888888777665554433210 00223445556666
Q ss_pred ccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhcccCCCCCC
Q 007443 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQQEGASDSN 392 (603)
Q Consensus 315 ~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~~~~~~~~~ 392 (603)
++..| ..+|++|||+|+++|||||++++.++++++++. ++|++||++|+||+||+++|+++ ||+...-..+ +
T Consensus 235 ~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~--~ 308 (621)
T 2o1s_A 235 GMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL--KGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPS--S 308 (621)
T ss_dssp ----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS--CSEEEEEEECCCTTCCCCC-------------------
T ss_pred hccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc--CCCEEEEEEEecccCCChhhcCchhccCCCCCCCC--c
Confidence 55444 689999999999999999999999999999987 89999999999999999998876 7775211000 0
Q ss_pred CCC--CCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCCeEE
Q 007443 393 SLP--FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPF 470 (603)
Q Consensus 393 ~~p--~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~ 470 (603)
..+ ......+|+++|+++|.+++++|++|+++++|+.+++++.+|+++||+||||+||+|++|+++|+|+|+.|++||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~ 388 (621)
T 2o1s_A 309 GCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPI 388 (621)
T ss_dssp ---------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred CcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEE
Confidence 001 112346999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred EEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCC
Q 007443 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (603)
Q Consensus 471 ~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~ 550 (603)
+++|++|++|++|||++++|++++||+++++++|++|++|+|||+.+|+++||++|||+|++|+|++|+++++++|+...
T Consensus 389 ~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~ 468 (621)
T 2o1s_A 389 VAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN 468 (621)
T ss_dssp EEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC
T ss_pred EEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999998755
Q ss_pred CCcEEEEeecCCCccccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHh
Q 007443 551 DRPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHV 601 (603)
Q Consensus 551 ~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~ 601 (603)
++|++||++|+.++..+++. .+.+++||++ |.|++|||+|.+++.|+++
T Consensus 469 ~~Pv~i~~~r~~~~~~~~~~--~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A 521 (621)
T 2o1s_A 469 DGPSAVRYPRGNAVGVELTP--LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV 521 (621)
T ss_dssp SSCEEEECCSSBCCCCCCCC--CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCCCCc--cccccCCceEEeecCCCEEEEEecHHHHHHHHH
Confidence 89999999998865433332 2678899865 8999999999999999986
No 3
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=2.5e-86 Score=749.73 Aligned_cols=446 Identities=17% Similarity=0.199 Sum_probs=384.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHhhcc--------CCCceeeecCCchH---HHHHHHhc
Q 007443 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVFH--------APVDKILWDVGEQT---YAHKILTG 161 (603)
Q Consensus 94 l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf~--------~p~D~ii~d~GH~a---Y~~~~LtG 161 (603)
|+.++|+++|++||..++++++ +++||+|++||++|++++||++|+ .+||+||||+||++ |+|++|+|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 4678999999999999999998 599999999999999999988875 25999999999999 99999999
Q ss_pred ch---hHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC-------CCeEEEEEcCCccccch
Q 007443 162 RR---SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-------RECIVTVISNGTTMAGQ 230 (603)
Q Consensus 162 r~---~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~-------~~~Vv~viGDGal~eG~ 230 (603)
++ +.|.+|||.++. +|||++ +++++.+++|++|+++|+|+|||+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 94 889999999876 699999 8999999999999999999999999998754 89999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 231 ~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
+||||++|++++ .|+|+|+|||+++|+ .+++..
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~i~--------~~~~~~-------------------------------------- 193 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNISIE--------GDVGLA-------------------------------------- 193 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGGT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcccc--------cchhhh--------------------------------------
Confidence 999999999999 679999999999983 233210
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC-
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG- 387 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~- 387 (603)
+..++..+|++|||+++ +|||||+++|.++|+++++. ++|++||++|+||+||+++|+.. +||..+..
T Consensus 194 -------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~~--~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e 263 (632)
T 3l84_A 194 -------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKKS--TKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEE 263 (632)
T ss_dssp -------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHTC--SSCEEEEEECCTTTTCGGGTTCGGGSSSCCCHH
T ss_pred -------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHhC--CCCEEEEEeeEeeecCCCCCCcccccCCCCCHH
Confidence 12344678999999999 99999999999999999985 89999999999999999987765 66653210
Q ss_pred --------------CC-C--------------------------------------------CCCCC-C-CCCCccHHHH
Q 007443 388 --------------AS-D--------------------------------------------SNSLP-F-GNYSRTYDDC 406 (603)
Q Consensus 388 --------------~~-~--------------------------------------------~~~~p-~-~~~~~s~~~a 406 (603)
.+ . ....| + ...++++|++
T Consensus 264 ~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r~a 343 (632)
T 3l84_A 264 VIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATRDS 343 (632)
T ss_dssp HHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHHHH
T ss_pred HHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHHHH
Confidence 00 0 00001 0 0235789999
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcchh-hhhHhC-CCCeeecchhhHHHHHHHHHHhcC-CCeEEEEecHHhHHHHHH
Q 007443 407 FIEALVMEAEKDKDIVVVHAGMEMDLSLQ-LFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYD 483 (603)
Q Consensus 407 ~~~aL~~~~~~d~~vvvi~aDl~~~~~l~-~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~~~~Fl~ra~d 483 (603)
++++|.++++.+|++|++++|++++.+.. .+.++| |+||||+||+||+|+++|+|||+. |++||+++|++|++|+++
T Consensus 344 ~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~~~ 423 (632)
T 3l84_A 344 NGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYLKP 423 (632)
T ss_dssp HHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHH
Confidence 99999999999999999999998655442 223678 999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCC
Q 007443 484 QVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 484 Qi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
||++ +|++++||+++++++|+ +|+||+|||+.+|+++||+||||+|++|+|+.|++++|++|+. +++|+|||++|+.
T Consensus 424 ~ir~-~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 424 AARI-AALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQK 501 (632)
T ss_dssp HHHH-HHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSC
T ss_pred HHHH-HhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCC
Confidence 9986 79999999999999888 6999999999999999999999999999999999999999976 7899999999987
Q ss_pred CccccCCCCCCcccccccc-----c--CCcEEEEEecHHHHHHHHhh
Q 007443 563 IVRTDLPGYRGIPIEVVTR-----H--ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 563 ~~~~~~~~~~~~~~~~Gka-----~--G~dvtIIa~G~~v~~al~~~ 602 (603)
. ++....+..+++++ + |+|+||||||.||+.||++.
T Consensus 502 ~----~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa 544 (632)
T 3l84_A 502 L----KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESA 544 (632)
T ss_dssp B----CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHH
T ss_pred C----CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHH
Confidence 5 22221234456665 2 68999999999999999873
No 4
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-85 Score=745.50 Aligned_cols=449 Identities=17% Similarity=0.180 Sum_probs=387.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc-C-------CCceeeecCCchH---HHHHHHhc
Q 007443 96 IKELKQLA-VEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH-A-------PVDKILWDVGEQT---YAHKILTG 161 (603)
Q Consensus 96 ~~~L~~la-~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~-~-------p~D~ii~d~GH~a---Y~~~~LtG 161 (603)
.+||+++| ++||..++++++ .++||+|++||++|++++||+ +|+ . +|||||||+||++ |++++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 35799999 899999999998 678999999999999999997 776 3 3899999999999 99999999
Q ss_pred c---hhHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHc-------------CCCCeEEEEEcCC
Q 007443 162 R---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-------------GKRECIVTVISNG 224 (603)
Q Consensus 162 r---~~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~-------------g~~~~Vv~viGDG 224 (603)
+ .+++.+|||.|+ ++|||++.+++++.+++|++|+|+|.|+|||+|.+++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 889999999986 6999999889999999999999999999999999875 5688999999999
Q ss_pred ccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchh
Q 007443 225 TTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (603)
Q Consensus 225 al~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~ 303 (603)
+++||++|||+|+|++++ .|+|+|+|||+++|+ .+++..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~--------~~~~~~-------------------------------- 218 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIE--------DDTNIA-------------------------------- 218 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGGT--------------------------------
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccc--------cchhhc--------------------------------
Confidence 999999999999999999 479999999999983 233110
Q ss_pred HHHHhHHHhhhccCCCChhhHHhhcCCeEEeec-CCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hh
Q 007443 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AI 381 (603)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~v-DGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~ 381 (603)
...+...+|++|||+++ .| ||||+++|.+++++|++. .++|++||++|+||+|++++|+.. +|
T Consensus 219 -------------~~~~~~~~~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~~~~H 283 (700)
T 3rim_A 219 -------------LCEDTAARYRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDTGKAH 283 (700)
T ss_dssp -------------CCCCHHHHHHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSHHHH
T ss_pred -------------cchhHHHHHHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCCcccc
Confidence 01223577999999999 68 999999999999999973 289999999999999999998766 66
Q ss_pred hhcccC--------------C--------------------------------------CC---------CCCCC-----
Q 007443 382 EKQQEG--------------A--------------------------------------SD---------SNSLP----- 395 (603)
Q Consensus 382 g~~~~~--------------~--------------------------------------~~---------~~~~p----- 395 (603)
|..+.. . |. ...+|
T Consensus 284 g~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~ 363 (700)
T 3rim_A 284 GAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDA 363 (700)
T ss_dssp HSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcchhh
Confidence 643200 0 00 00112
Q ss_pred ---C---CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc-----hhhhhHhC------C----CCeeecchhhHH
Q 007443 396 ---F---GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKF------P----ERYFDVGMAEQH 454 (603)
Q Consensus 396 ---~---~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~-----l~~f~~~f------p----~R~id~GIaE~~ 454 (603)
. ..+++++|++++++|.+++++||+||++++|++.+++ +..|+++| | +||||+||+||+
T Consensus 364 ~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~ 443 (700)
T 3rim_A 364 DLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHA 443 (700)
T ss_dssp SCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHH
T ss_pred hcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHH
Confidence 1 1246789999999999999999999999999986655 36788888 9 599999999999
Q ss_pred HHHHHHHHhcC-CCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEe
Q 007443 455 AVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMA 532 (603)
Q Consensus 455 ~vg~AaGlA~~-G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~ 532 (603)
|+++|+|||+. |++||+++|+.|++++++|||. +|++++||+++++++|+ +|+||+|||+++|+++||+||||+|++
T Consensus 444 mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~ir~-~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~ 522 (700)
T 3rim_A 444 MGAILSGIVLHGPTRAYGGTFLQFSDYMRPAVRL-AALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVR 522 (700)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHH-hcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEEEe
Confidence 99999999999 9999999999999999999987 79999999999999888 699999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCC--CcEEEEeecCCCccccCCCCCCccccccccc---CC--------cEEEEEecHHHHHHH
Q 007443 533 PSDEDELVDMVATVASIDD--RPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH---AS--------CTCLIITFEMLLCFL 599 (603)
Q Consensus 533 Psd~~e~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~---G~--------dvtIIa~G~~v~~al 599 (603)
|+|++|++++|++|+..++ +|++||++|+..+. ++....+.+++|+.. |+ |+|||++|.+|+.||
T Consensus 523 Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~~~~~~~~G~~vlr~g~~~~~~~~~dvtiia~G~~v~~al 600 (700)
T 3rim_A 523 PADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAV 600 (700)
T ss_dssp CSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTCCHHHHHHSCEEEECCSCCCTTCCCSEEEEECGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcccccccCCCcEEEecCCccccCCCCCEEEEEechHHHHHH
Confidence 9999999999999987655 79999999987642 222113567777632 55 999999999999999
Q ss_pred Hhh
Q 007443 600 HVL 602 (603)
Q Consensus 600 ~~~ 602 (603)
++.
T Consensus 601 ~Aa 603 (700)
T 3rim_A 601 AAQ 603 (700)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 5
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.1e-84 Score=740.55 Aligned_cols=448 Identities=16% Similarity=0.187 Sum_probs=378.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hccC------CCceeeecCCchH---HHHHHHhcc-
Q 007443 97 KELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFHA------PVDKILWDVGEQT---YAHKILTGR- 162 (603)
Q Consensus 97 ~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~~------p~D~ii~d~GH~a---Y~~~~LtGr- 162 (603)
..++++|++||..++++++ +++||+|++||++|++++||+ .||. +|||||||+||++ |++++|+|+
T Consensus 4 ~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~ 83 (663)
T 3kom_A 4 SIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYD 83 (663)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC
Confidence 3457889999999999998 599999999999999999964 5653 5999999999999 999999999
Q ss_pred --hhHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCccccc
Q 007443 163 --RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAG 229 (603)
Q Consensus 163 --~~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal~eG 229 (603)
.+.|.+|||.++. +|||++...+++.+++|++|+|+|+|+|||+|.++++. +++|||++|||++++|
T Consensus 84 ~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG 163 (663)
T 3kom_A 84 LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEG 163 (663)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhc
Confidence 4889999999865 69999988899999999999999999999999987654 7899999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHh
Q 007443 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (603)
Q Consensus 230 ~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (603)
++||||++|++++ .|+|+|+|||+++|+ .+++..
T Consensus 164 ~~~Eal~~A~~~~L~~livi~dnN~~~i~--------~~~~~~------------------------------------- 198 (663)
T 3kom_A 164 VSHEACSLAGTLGLNKLVAFWDDNNISID--------GDTKGW------------------------------------- 198 (663)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECC-------------CGGGT-------------------------------------
T ss_pred hHHHHHHHHHHhCCCeEEEEEECCCcccc--------cchhhh-------------------------------------
Confidence 9999999999999 679999999999983 223210
Q ss_pred HHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC
Q 007443 309 VDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG 387 (603)
Q Consensus 309 ~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~ 387 (603)
+.+++..+|++|||+++++|||||+++|.++++++++. .++|++||++|+||+||+++|+.+ +||.++..
T Consensus 199 --------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~ 269 (663)
T 3kom_A 199 --------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGTASVHGSPLSD 269 (663)
T ss_dssp --------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCH
T ss_pred --------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCCccccCCCCCH
Confidence 12344678999999999999999999999999999983 279999999999999999987765 66543210
Q ss_pred --------------CC-C-----------------------------C-------------CCCCC--------------
Q 007443 388 --------------AS-D-----------------------------S-------------NSLPF-------------- 396 (603)
Q Consensus 388 --------------~~-~-----------------------------~-------------~~~p~-------------- 396 (603)
.| . . ..+|.
T Consensus 270 e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 349 (663)
T 3kom_A 270 QERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIASQL 349 (663)
T ss_dssp HHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhhhhh
Confidence 00 0 0 01221
Q ss_pred -CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhh-HhCCCCeeecchhhHHHHHHHHHHhcC-CCe
Q 007443 397 -GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLACG-GLK 468 (603)
Q Consensus 397 -~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~-~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~ 468 (603)
.++++++|++++++|.++++.+|+++++++|++++.++ .+|+ ++||+||||+||+||+|+++|+|||+. |++
T Consensus 350 ~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~gG~~ 429 (663)
T 3kom_A 350 SNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYGGIK 429 (663)
T ss_dssp HSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred ccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcCCCE
Confidence 13567899999999999999999999999999876543 3574 899999999999999999999999998 999
Q ss_pred EEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Q 007443 469 PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (603)
Q Consensus 469 P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 547 (603)
||+++|++|++|+++||++ +|++++||+++++++|+ +|+||+|||+.+|+++||+||||+|++|+|++|++++|++|+
T Consensus 430 P~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~~A~ 508 (663)
T 3kom_A 430 PYGGTFLVFSDYSRNAIRM-SALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWKEAV 508 (663)
T ss_dssp EEEEEEGGGHHHHHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Confidence 9999999999999999987 69999999999988888 699999999999999999999999999999999999999998
Q ss_pred hCCCCcEEEEeecCCCccccCCCCCC---cccccccc---c--CCcEEEEEecHHHHHHHHhh
Q 007443 548 SIDDRPVCFRYPRGAIVRTDLPGYRG---IPIEVVTR---H--ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 548 ~~~~~P~~ir~~r~~~~~~~~~~~~~---~~~~~Gka---~--G~dvtIIa~G~~v~~al~~~ 602 (603)
..+++|++||++|+..+.. +. .+ +.++.|+. + |+|+||||+|.+|+.||++.
T Consensus 509 ~~~~~Pv~ir~~r~~~p~~--~~-~~~~~~~~~~G~~vl~~~~g~dvtiia~G~~v~~al~Aa 568 (663)
T 3kom_A 509 KSKDTPSVMVLTRQNLMPV--VQ-TQHQVANIARGGYLVKDNPDAKLTIVATGSEVELAVKVA 568 (663)
T ss_dssp HCSSCCEEEECCSSEECCC--CC-CHHHHHHHTTTCEEEECCTTCSCEEEECTTHHHHHHHHH
T ss_pred HhCCCCEEEEccCccCCCc--Cc-cccchhcccCceEEEEecCCCCEEEEEecHHHHHHHHHH
Confidence 7579999999999875421 11 11 24555542 1 68999999999999999873
No 6
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=6.3e-84 Score=730.68 Aligned_cols=450 Identities=21% Similarity=0.259 Sum_probs=386.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hc----c----CCCceeeecCCchH---HHH
Q 007443 90 RLKSLTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VF----H----APVDKILWDVGEQT---YAH 156 (603)
Q Consensus 90 ~~k~l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf----~----~p~D~ii~d~GH~a---Y~~ 156 (603)
.+.+.+.+||+++|++||..++++++ .++||+|++||++|++++||+ ++ + .+||+||||+||++ |++
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~ 83 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAV 83 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHH
Confidence 45666789999999999999999998 667999999999999999985 33 2 24899999999999 999
Q ss_pred HHHhcc--hhHhhHhhhcC-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC-CCeEEEEEcCCccccchHH
Q 007443 157 KILTGR--RSLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQAY 232 (603)
Q Consensus 157 ~~LtGr--~~~~~~~R~~g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~-~~~Vv~viGDGal~eG~~~ 232 (603)
++|+|+ +++|.+|||+| +++|||++.++.++ +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++|
T Consensus 84 ~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~ 162 (616)
T 3mos_A 84 WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVW 162 (616)
T ss_dssp HHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHH
T ss_pred HHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHH
Confidence 999996 78899999997 89999999877676 7999999999999999999887665 5899999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH
Q 007443 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (603)
Q Consensus 233 EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (603)
|||++|++++ .|+++|+|||+++++ .++... ....+
T Consensus 163 Eal~~A~~~~l~~livi~nnN~~~i~--------~~~~~~-----------------------------------~~~~~ 199 (616)
T 3mos_A 163 EAMAFASIYKLDNLVAILDINRLGQS--------DPAPLQ-----------------------------------HQMDI 199 (616)
T ss_dssp HHHHHHHHTTCTTEEEEEEECSBCSS--------SBCTTT-----------------------------------TCHHH
T ss_pred HHHHHHHHcCCCcEEEEEECCCCCCc--------CCcccc-----------------------------------cChHH
Confidence 9999999999 679999999999983 121100 00011
Q ss_pred hhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC---
Q 007443 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG--- 387 (603)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~--- 387 (603)
+..+|++|||+++ +|||||+++|.++++++ . ++|++||++|+||+||+.+|+.. |||.++..
T Consensus 200 ---------~~~~~~a~G~~~~-~VdG~d~~~l~~al~~~--~--~~P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~ 265 (616)
T 3mos_A 200 ---------YQKRCEAFGWHAI-IVDGHSVEELCKAFGQA--K--HQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMA 265 (616)
T ss_dssp ---------HHHHHHHTTCEEE-EEETTCHHHHHHHHHSC--C--SSCEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHH
T ss_pred ---------HHHHHHHcCCeEE-EEcCCCHHHHHHHHHhc--C--CCCEEEEEEEecccccccccCchhhcCCCCCHHHH
Confidence 1467999999999 99999999999999755 2 79999999999999998877654 77754310
Q ss_pred ---------------C--CC--C-------------CCCC-C-CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc
Q 007443 388 ---------------A--SD--S-------------NSLP-F-GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS 433 (603)
Q Consensus 388 ---------------~--~~--~-------------~~~p-~-~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~ 433 (603)
+ +. . ..+| + ..+..++|++|+++|.+++++||+||++++|+++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~ 345 (616)
T 3mos_A 266 EQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF 345 (616)
T ss_dssp HHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS
T ss_pred HHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc
Confidence 0 00 0 0011 1 1245789999999999999999999999999998888
Q ss_pred hhhhhHhCCCCeeecchhhHHHHHHHHHHhcCCC-eEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCC
Q 007443 434 LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGP 511 (603)
Q Consensus 434 l~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~G~-~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~ 511 (603)
+..|+++||+||||+||+|++|+++|+|||+.|+ +||+.+|++|++|++|||+++ +++++||+++++++|+ +|.||+
T Consensus 346 ~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G~dG~ 424 (616)
T 3mos_A 346 SEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIGEDGP 424 (616)
T ss_dssp HHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGCTTCG
T ss_pred hhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccccCCCC
Confidence 8999999999999999999999999999999997 799999999999999999996 8999999999999999 799999
Q ss_pred CCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCCCCCccccccccc----CCc--
Q 007443 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEVVTRH----ASC-- 585 (603)
Q Consensus 512 tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~~Gka~----G~d-- 585 (603)
|||+.+|+++||++|||+|++|+|+.|++.++++++. .++|++||++|...+.. +...+.+++||++ |+|
T Consensus 425 tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~---~~~~~~~~~Gka~vl~eg~d~d 500 (616)
T 3mos_A 425 SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII---YNNNEDFQVGQAKVVLKSKDDQ 500 (616)
T ss_dssp GGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC---SCTTCCCCTTCCEEEECCSSEE
T ss_pred cccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc---CCCcccccCCeEEEEEeCCCCC
Confidence 9999999999999999999999999999999999975 58999999999875422 2235677889986 666
Q ss_pred EEEEEecHHHHHHHHhh
Q 007443 586 TCLIITFEMLLCFLHVL 602 (603)
Q Consensus 586 vtIIa~G~~v~~al~~~ 602 (603)
+||||||.+|+.|+++.
T Consensus 501 v~iva~G~~v~~al~Aa 517 (616)
T 3mos_A 501 VTVIGAGVTLHEALAAA 517 (616)
T ss_dssp EEEECCTHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHH
Confidence 99999999999999874
No 7
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.1e-84 Score=741.94 Aligned_cols=459 Identities=17% Similarity=0.173 Sum_probs=381.5
Q ss_pred hhhccCCHHHHHHHH-HHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh-hcc--------CCCceeeecCCchH---H
Q 007443 89 LRLKSLTIKELKQLA-VEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---Y 154 (603)
Q Consensus 89 ~~~k~l~~~~L~~la-~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~-vf~--------~p~D~ii~d~GH~a---Y 154 (603)
..++|++.++|+++| ++||..++++++ +++||+|++||++|++++||+ +|+ .+|||||||+||++ |
T Consensus 19 ~~~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lY 98 (690)
T 3m49_A 19 YFQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLY 98 (690)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHH
Confidence 457888888899999 899999999998 699999999999999999995 665 25899999999999 9
Q ss_pred HHHHHhcc---hhHhhHhhhcCCCC-CCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEE
Q 007443 155 AHKILTGR---RSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTV 220 (603)
Q Consensus 155 ~~~~LtGr---~~~~~~~R~~ggl~-g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~v 220 (603)
+|++|+|+ .++|.+|||.|++. |||++.+++++.+++|++|+|+|+|+|||+|.++++. +++|||+
T Consensus 99 a~l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i 178 (690)
T 3m49_A 99 SLLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAI 178 (690)
T ss_dssp HHHHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEE
T ss_pred HHHHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEE
Confidence 99999999 89999999998765 9999999999999999999999999999999987653 7899999
Q ss_pred EcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccc
Q 007443 221 ISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (603)
Q Consensus 221 iGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (603)
+|||++++|++||||++|++++ .|+|+|+|||+++|+ .++..
T Consensus 179 ~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~--------~~~~~----------------------------- 221 (690)
T 3m49_A 179 CGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLD--------GDLNR----------------------------- 221 (690)
T ss_dssp ECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS--------SBGGG-----------------------------
T ss_pred ECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecc--------cchhh-----------------------------
Confidence 9999999999999999999999 679999999999983 22210
Q ss_pred cchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc
Q 007443 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE 379 (603)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~ 379 (603)
.+.++...+|++|||+++.++||||+++|.++++++++. .++|++||++|+||+||+.+|+..
T Consensus 222 ----------------~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~~~~ 284 (690)
T 3m49_A 222 ----------------SFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKSGKS 284 (690)
T ss_dssp ----------------TCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSG
T ss_pred ----------------ccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCcccCcc
Confidence 012234678999999999555999999999999999982 289999999999999998776654
Q ss_pred -hhhhcccC--------------C---------------------------------------CC---------CCCCC-
Q 007443 380 -AIEKQQEG--------------A---------------------------------------SD---------SNSLP- 395 (603)
Q Consensus 380 -~~g~~~~~--------------~---------------------------------------~~---------~~~~p- 395 (603)
+||.++.. . |. ...+|
T Consensus 285 ~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~ 364 (690)
T 3m49_A 285 ASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPE 364 (690)
T ss_dssp GGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCT
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCch
Confidence 66543210 0 00 00112
Q ss_pred -------C--CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhHhC-CCCeeecchhhHHHHHHHH
Q 007443 396 -------F--GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKF-PERYFDVGMAEQHAVTFSA 460 (603)
Q Consensus 396 -------~--~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~~f-p~R~id~GIaE~~~vg~Aa 460 (603)
. ..+++++|++++++|.++++++|+++++++|++++.++ .+|+++| |+||||+||+||+|+++|+
T Consensus 365 ~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~ 444 (690)
T 3m49_A 365 GWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMN 444 (690)
T ss_dssp TGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHH
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHH
Confidence 0 12456899999999999999999999999999865443 4677665 8999999999999999999
Q ss_pred HHhcC-CCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHH
Q 007443 461 GLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538 (603)
Q Consensus 461 GlA~~-G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e 538 (603)
|||+. |++||+++|+.|+..+..|||. +|++++||+++++++|+ +|+||+|||+++|+++||+||||+|++|+|++|
T Consensus 445 GlA~~gG~~P~~~tf~~Fs~f~~~air~-~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E 523 (690)
T 3m49_A 445 GIALHGGLKTYGGTFFVFSDYLRPAIRL-AALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNE 523 (690)
T ss_dssp HHHHHSSCEEEEEEEGGGGGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred HHHHcCCCEEEEEecHHHHHHHHHHHHH-HHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 99998 8999999988887666678876 79999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeecCCCccccCC-CCCCccccccccc---CC----cEEEEEecHHHHHHHHhh
Q 007443 539 LVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIEVVTRH---AS----CTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~-~~~~~~~~~Gka~---G~----dvtIIa~G~~v~~al~~~ 602 (603)
++++|++|+...++|++||++|+..+..... ....+.+++|+.. |+ |+||||+|.+|+.||++.
T Consensus 524 ~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~~vlr~g~~g~~dvtiia~G~~v~~Al~Aa 595 (690)
T 3m49_A 524 SVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAVEAQ 595 (690)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSCEEEECCSSSSCSEEEEECTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCeEEEEecCCCCCCEEEEEechHHHHHHHHH
Confidence 9999999987668999999999875421100 0001456667532 54 999999999999999873
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.1e-82 Score=725.40 Aligned_cols=458 Identities=19% Similarity=0.216 Sum_probs=390.1
Q ss_pred ChhhhccCCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hcc------CCCceeeecCCchH---
Q 007443 87 NPLRLKSLTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT--- 153 (603)
Q Consensus 87 ~p~~~k~l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~------~p~D~ii~d~GH~a--- 153 (603)
.|-+.|+|+.++|+++|++||..++++++ +++||+|++||++|++++||+ +|| .+||+||||+||++
T Consensus 4 ~~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~l 83 (675)
T 1itz_A 4 ETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 83 (675)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHH
T ss_pred chhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHH
Confidence 35678999999999999999999999998 499999999999999999994 565 35899999999999
Q ss_pred HHHHHHhcch----hHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEE
Q 007443 154 YAHKILTGRR----SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIV 218 (603)
Q Consensus 154 Y~~~~LtGr~----~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv 218 (603)
|+|++|+|+. ++|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++||
T Consensus 84 Ya~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~ 163 (675)
T 1itz_A 84 YALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTY 163 (675)
T ss_dssp HHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEE
T ss_pred HHHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEE
Confidence 9999999996 889999999876 8999998999999999999999999999999998776 688999
Q ss_pred EEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhc
Q 007443 219 TVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKR 297 (603)
Q Consensus 219 ~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~ 297 (603)
|++|||++++|++||||++|++++ .|+|+|+|||+++|+ .+++.
T Consensus 164 ~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~--------~~~~~--------------------------- 208 (675)
T 1itz_A 164 VILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID--------GDTEI--------------------------- 208 (675)
T ss_dssp EEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGG---------------------------
T ss_pred EEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCC--------CChhh---------------------------
Confidence 999999999999999999999999 689999999999983 23211
Q ss_pred cccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCC-CHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCccc
Q 007443 298 IGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGh-D~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae 376 (603)
.+..++..+|++|||+++++|||| |+++|.++++++++. .++|++||++|+||+|++++|
T Consensus 209 ------------------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~ 269 (675)
T 1itz_A 209 ------------------AFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA 269 (675)
T ss_dssp ------------------TCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT
T ss_pred ------------------hcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc
Confidence 012334678999999999899999 999999999999873 279999999999999999877
Q ss_pred CCc-hhhhcccC----------------------------C-----------------------CC---------CCCCC
Q 007443 377 KSE-AIEKQQEG----------------------------A-----------------------SD---------SNSLP 395 (603)
Q Consensus 377 ~~~-~~g~~~~~----------------------------~-----------------------~~---------~~~~p 395 (603)
... +||.++.. + |. ....|
T Consensus 270 ~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p 349 (675)
T 1itz_A 270 NSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELP 349 (675)
T ss_dssp TSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCCC
T ss_pred CcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccCC
Confidence 544 55431100 0 00 00011
Q ss_pred -----------CCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhH-hCCCCeeecchhhHHHHHH
Q 007443 396 -----------FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAVTF 458 (603)
Q Consensus 396 -----------~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~-~fp~R~id~GIaE~~~vg~ 458 (603)
..++.+++|++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+||+|+++
T Consensus 350 ~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~~ 429 (675)
T 1itz_A 350 TGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAI 429 (675)
T ss_dssp TTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHH
T ss_pred chhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHHH
Confidence 123567999999999999999999999999999866554 34887 9999999999999999999
Q ss_pred HHHHhcCC--CeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCC
Q 007443 459 SAGLACGG--LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD 535 (603)
Q Consensus 459 AaGlA~~G--~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd 535 (603)
|+|||+.| ++||+++|++|+.++++||++ +|++++||+++++++|+ +|++|+|||+++|+++||+||||+|++|+|
T Consensus 430 a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad 508 (675)
T 1itz_A 430 CNGIALHSPGFVPYCATFFVFTDYMRGAMRI-SALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPAD 508 (675)
T ss_dssp HHHHHTTCTTCEEEEEEEGGGHHHHHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCS
T ss_pred HHHHHhcCCCCEEEEEEHHHHHHHHHHHHHH-HHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCC
Confidence 99999999 999999999999999999988 69999999999988888 588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCCCCCc-ccccccc---c---C--CcEEEEEecHHHHHHHHhh
Q 007443 536 EDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEVVTR---H---A--SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 536 ~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~-~~~~Gka---~---G--~dvtIIa~G~~v~~al~~~ 602 (603)
++|++++|++|+...++|++||++|+..+.. +. ..+ .+++|.. + | +|+|||++|.+|+.||++.
T Consensus 509 ~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~--~~-~~~~~~~~Ga~vl~~~~~G~~~dv~iva~G~~v~~al~Aa 581 (675)
T 1itz_A 509 GNETAGAYKVAVLNRKRPSILALSRQKLPHL--PG-TSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAA 581 (675)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECSSCBCCC--TT-CCHHHHTTSSEEEEECCSTTCCSEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCCCCCC--CC-ccccccccCCEEEecccCCCCCCEEEEEECHHHHHHHHHH
Confidence 9999999999987558999999999876432 22 133 4666631 1 5 8999999999999999874
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.8e-83 Score=731.95 Aligned_cols=445 Identities=18% Similarity=0.206 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hccC------CCceeeecCCchH---HHHHHHhcch--
Q 007443 99 LKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFHA------PVDKILWDVGEQT---YAHKILTGRR-- 163 (603)
Q Consensus 99 L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~~------p~D~ii~d~GH~a---Y~~~~LtGr~-- 163 (603)
.+++|++||..++++++ +++||+|++||++|++++||+ .||. +|||||||+||++ |++++|+|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 35689999999999998 599999999999999999965 5653 5899999999999 9999999994
Q ss_pred -hHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCccccchH
Q 007443 164 -SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (603)
Q Consensus 164 -~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~----------~~~Vv~viGDGal~eG~~ 231 (603)
++|.+|||.++. +|||+....++.++++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 889999999765 79999877888889999999999999999999987653 789999999999999999
Q ss_pred HHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHH
Q 007443 232 YEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (603)
Q Consensus 232 ~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (603)
||||++|++++ .|+|+|+|||+++|+ .+++..
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~i~--------~~~~~~--------------------------------------- 237 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGISID--------GDVVNW--------------------------------------- 237 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGGT---------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcccc--------cchhhh---------------------------------------
Confidence 99999999999 569999999999883 233211
Q ss_pred HhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC--
Q 007443 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG-- 387 (603)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~-- 387 (603)
+.+++..+|++|||+++.+|||||+++|.++++++++. ++|++||++|+||+|++.+|... +||.++..
T Consensus 238 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~--~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~ 309 (711)
T 3uk1_A 238 ------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRS--DKPSLICCKTRIGNGAATKAGGHDVHGAPLGADE 309 (711)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTC--SSCEEEEEEC--------------------CHHH
T ss_pred ------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEEccccccCCCCCCCcccccCCCCCHHH
Confidence 12344678999999999669999999999999999875 89999999999999998776544 66542100
Q ss_pred ------------CC----C-----------------------------------------CCCCCC--------------
Q 007443 388 ------------AS----D-----------------------------------------SNSLPF-------------- 396 (603)
Q Consensus 388 ------------~~----~-----------------------------------------~~~~p~-------------- 396 (603)
.| . ...+|.
T Consensus 310 ~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~ 389 (711)
T 3uk1_A 310 IAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGAN 389 (711)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhhhh
Confidence 00 0 001221
Q ss_pred -CCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhHh---CC---CCeeecchhhHHHHHHHHHHhc
Q 007443 397 -GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK---FP---ERYFDVGMAEQHAVTFSAGLAC 464 (603)
Q Consensus 397 -~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~~---fp---~R~id~GIaE~~~vg~AaGlA~ 464 (603)
.++++++|++++++|.++++.+|++|++++|+++++++ ..|+++ || +||||+||+||+|+++|+|||+
T Consensus 390 ~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~ 469 (711)
T 3uk1_A 390 ERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVL 469 (711)
T ss_dssp HHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHHHH
Confidence 13567899999999999999999999999999865443 478889 99 9999999999999999999999
Q ss_pred -CCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHH
Q 007443 465 -GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDM 542 (603)
Q Consensus 465 -~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~ 542 (603)
.|++||+++|++|++|+++||++ +|++++||+++++++|+ +|+||+|||+++|+++||+||||+|++|+|++|++++
T Consensus 470 ~~G~~Pv~~~f~~F~~~~~~~ir~-~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~~~ 548 (711)
T 3uk1_A 470 HGGYKPFGGTFLTFSDYSRNALRV-AALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVA 548 (711)
T ss_dssp HSSCEEEEEEEGGGHHHHHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHH
T ss_pred cCCCEEEEEEhHHHHHHHHHHHHH-hhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHHHH
Confidence 59999999999999999999987 69999999999999888 6999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEeecCCCccccCCCCC--Ccccccccc-----cC----CcEEEEEecHHHHHHHHhh
Q 007443 543 VATVASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEVVTR-----HA----SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 543 l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~--~~~~~~Gka-----~G----~dvtIIa~G~~v~~al~~~ 602 (603)
|++|+. +++|+|||++|+..+. ++... .+.+++|+. +| +|+|||++|.+|+.||++.
T Consensus 549 l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa 616 (711)
T 3uk1_A 549 WTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAV 616 (711)
T ss_dssp HHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSSEEEECCCSSCCSEEEEEEECTTHHHHHHHHH
T ss_pred HHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCeEEEEecCCCCCCCCEEEEEecHHHHHHHHHH
Confidence 999976 7999999999987642 22111 145666753 26 7999999999999999873
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=4.9e-81 Score=714.56 Aligned_cols=445 Identities=18% Similarity=0.195 Sum_probs=380.7
Q ss_pred HHHH-HHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh--hccC------CCceeeecCCchH---HHHHHHhcc--
Q 007443 98 ELKQ-LAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH--VFHA------PVDKILWDVGEQT---YAHKILTGR-- 162 (603)
Q Consensus 98 ~L~~-la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~--vf~~------p~D~ii~d~GH~a---Y~~~~LtGr-- 162 (603)
+|++ +|++||..++++++ +++||+|++||++|++++||+ .||. +||+||||+||++ |+|++|+|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 99999999999998 499999999999999999997 7763 5999999999999 999999999
Q ss_pred -hhHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccch
Q 007443 163 -RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (603)
Q Consensus 163 -~~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~ 230 (603)
.++|.+|||.|+. +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 7899999999876 899998 899999999999999999999999988764 478999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 231 ~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
+||||++|+.++ .|+++|+|||+++|+ .+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~i~--------~~~~~~-------------------------------------- 198 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKITID--------GATSIS-------------------------------------- 198 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCceEe--------cccccc--------------------------------------
Confidence 999999999999 669999999999983 222100
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecCCC-CHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhccc-
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQE- 386 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vDGh-D~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~- 386 (603)
+..++.++|++|||+++++|||| |+++|.++++++++. .++|++||++|+||+||+ .+..+ +|+..+.
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~~~~~~H~~~~~~ 269 (680)
T 1gpu_A 199 -------FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HAGSHSVHGAPLKA 269 (680)
T ss_dssp -------CCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TTTSGGGSSSCCCH
T ss_pred -------cCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cCCCCccCCCCCCH
Confidence 02234678999999999899999 999999999999873 279999999999999998 43322 3332100
Q ss_pred ---------------------------------C-------------------CCC---------CCCCC----------
Q 007443 387 ---------------------------------G-------------------ASD---------SNSLP---------- 395 (603)
Q Consensus 387 ---------------------------------~-------------------~~~---------~~~~p---------- 395 (603)
. .+. ...+|
T Consensus 270 ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~ 349 (680)
T 1gpu_A 270 DDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTY 349 (680)
T ss_dssp HHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSCCC
T ss_pred HHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhchhh
Confidence 0 000 00111
Q ss_pred -CCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhH------hCCCCeeecchhhHHHHHHHHHHh
Q 007443 396 -FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE------KFPERYFDVGMAEQHAVTFSAGLA 463 (603)
Q Consensus 396 -~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~------~fp~R~id~GIaE~~~vg~AaGlA 463 (603)
..++.+++|++++++|.++++.+|+++++++|++.++++ ..|++ +||+||||+||+||+|+|+|+|||
T Consensus 350 ~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA 429 (680)
T 1gpu_A 350 TAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGIS 429 (680)
T ss_dssp CTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHHHH
Confidence 124568999999999999999999999999999865543 35887 999999999999999999999999
Q ss_pred cCC-Ce-EEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHH
Q 007443 464 CGG-LK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540 (603)
Q Consensus 464 ~~G-~~-P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~ 540 (603)
+.| ++ ||+++|++|+.++++|||+ +|++++||+++++++|+ +|+||+|||+.+|+++||+||||+|++|+|++|++
T Consensus 430 ~~Gg~~~P~~~~f~~F~~~~~~air~-~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~ 508 (680)
T 1gpu_A 430 AFGANYKPYGGTFLNFVSYAAGAVRL-SALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVS 508 (680)
T ss_dssp HHCTTCEEEEEEEHHHHGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHH
T ss_pred hcCCCceEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 998 99 9999999999999999988 79999999999998888 58999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEeecCCCccccCCCCCCcc-ccccccc---C--CcEEEEEecHHHHHHHHhh
Q 007443 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIP-IEVVTRH---A--SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 541 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~-~~~Gka~---G--~dvtIIa~G~~v~~al~~~ 602 (603)
++|++|+...++|++||++|+..+. ++.. .+. +++|+.. | +|+||||||.+|+.||++.
T Consensus 509 ~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G~~vl~~g~~~dvtiva~G~~v~~al~Aa 573 (680)
T 1gpu_A 509 AAYKNSLESKHTPSIIALSRQNLPQ--LEGS-SIESASKGGYVLQDVANPDIILVATGSEVSLSVEAA 573 (680)
T ss_dssp HHHHHHHHCSSCCEEEECCSSCBCC--CTTC-CHHHHTTSCEEEECCSSCSEEEEECTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCC--CCCc-chhhccCCCEEEecCCCCCEEEEEEcHHHHHHHHHH
Confidence 9999998755899999999987653 2222 333 6777432 5 8999999999999999873
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=2e-80 Score=708.68 Aligned_cols=446 Identities=17% Similarity=0.185 Sum_probs=382.4
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hccC------CCceeeecCCchH---HHHHHHhcc---
Q 007443 99 LKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFHA------PVDKILWDVGEQT---YAHKILTGR--- 162 (603)
Q Consensus 99 L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~~------p~D~ii~d~GH~a---Y~~~~LtGr--- 162 (603)
|+++|++||..++++++ +++||+|++||++|++++||+ .||. +||+||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 67889999999999998 599999999999999999994 4553 5899999999999 999999999
Q ss_pred hhHhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccchH
Q 007443 163 RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (603)
Q Consensus 163 ~~~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~~ 231 (603)
.++|.+|||.++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8999999999876 8999988899999999999999999999999988764 3789999999999999999
Q ss_pred HHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHH
Q 007443 232 YEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (603)
Q Consensus 232 ~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (603)
||||++|+.++ .|+|+|+|||+++|+ .+++..
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~i~--------~~~~~~--------------------------------------- 196 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGISID--------GHVEGW--------------------------------------- 196 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETT--------EEGGGT---------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcEec--------cccccc---------------------------------------
Confidence 99999999999 679999999999983 222100
Q ss_pred HhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC--
Q 007443 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG-- 387 (603)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~-- 387 (603)
+..++.++|++|||+++++|||||+++|.++++++++. .++|++||++|+||+|+++++.++ +|+..+..
T Consensus 197 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee 269 (669)
T 2r8o_A 197 ------FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAE 269 (669)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHH
T ss_pred ------cCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHH
Confidence 01234678999999999899999999999999999873 279999999999999999866544 55431100
Q ss_pred ------------C------------------------------------CC---------CCCCC---------------
Q 007443 388 ------------A------------------------------------SD---------SNSLP--------------- 395 (603)
Q Consensus 388 ------------~------------------------------------~~---------~~~~p--------------- 395 (603)
. |. ...+|
T Consensus 270 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 349 (669)
T 2r8o_A 270 IALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQ 349 (669)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhhhc
Confidence 0 00 00222
Q ss_pred CCCCCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeE
Q 007443 396 FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKP 469 (603)
Q Consensus 396 ~~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P 469 (603)
..++++++|++++++|.++++.+|+++++++|++.++++ ..|+++||+||||+||+||+|+++|+|||+. |++|
T Consensus 350 ~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P 429 (669)
T 2r8o_A 350 ANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLP 429 (669)
T ss_dssp HSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeE
Confidence 123567899999999999999999999999999865543 4799999999999999999999999999999 8999
Q ss_pred EEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh
Q 007443 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (603)
Q Consensus 470 ~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~ 548 (603)
|+.+|++|+.++++||++ +|++++||+++++++|+ +|+||+|||+++|+++||++|||+|++|+|++|++++|++|+.
T Consensus 430 ~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~ 508 (669)
T 2r8o_A 430 YTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE 508 (669)
T ss_dssp EEEEEGGGGGTTHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred EEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHH
Confidence 999999999999999998 69999999999998888 5899999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeecCCCccccCCCCCCc---ccccccc---c--C-CcEEEEEecHHHHHHHHhh
Q 007443 549 IDDRPVCFRYPRGAIVRTDLPGYRGI---PIEVVTR---H--A-SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 549 ~~~~P~~ir~~r~~~~~~~~~~~~~~---~~~~Gka---~--G-~dvtIIa~G~~v~~al~~~ 602 (603)
..++|++||++|+.++. ++.. .+ .+++|+. + | +|+|||++|.+|+.||++.
T Consensus 509 ~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~~~G~~vl~~~~g~~dv~iva~G~~v~~al~Aa 568 (669)
T 2r8o_A 509 RQDGPTALILSRQNLAQ--QERT-EEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAAY 568 (669)
T ss_dssp CSSSCEEEECCSSEECC--CCCC-HHHHHHGGGSCEEEECCSSSCSEEEEECGGGHHHHHHHH
T ss_pred hCCCcEEEEeCCCCCCC--CCCc-cchhhhccCCCEEEeccCCCCCEEEEEECHHHHHHHHHH
Confidence 55899999999987652 2221 22 2566642 2 6 8999999999999999874
No 12
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=6.7e-80 Score=702.44 Aligned_cols=443 Identities=19% Similarity=0.178 Sum_probs=377.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hcc------CCCceeeecCCchH---HHHHHHhcc---hh
Q 007443 101 QLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT---YAHKILTGR---RS 164 (603)
Q Consensus 101 ~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~------~p~D~ii~d~GH~a---Y~~~~LtGr---~~ 164 (603)
++|++||..++++++ +++||+|+++|++|++++||+ .|| .+||+||||+||++ |+|++|+|+ ++
T Consensus 10 ~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 89 (651)
T 2e6k_A 10 LSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPLE 89 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCHH
Confidence 579999999999998 599999999999999999994 565 35899999999999 999999999 88
Q ss_pred HhhHhhhcCCC-CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccchHHH
Q 007443 165 LIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAYE 233 (603)
Q Consensus 165 ~~~~~R~~ggl-~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~~~E 233 (603)
.|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++||
T Consensus 90 ~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~E 169 (651)
T 2e6k_A 90 ELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGE 169 (651)
T ss_dssp HHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHH
T ss_pred HHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHH
Confidence 99999999876 8999998899999999999999999999999998765 688999999999999999999
Q ss_pred HHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHh
Q 007443 234 AMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (603)
Q Consensus 234 Aln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~ 312 (603)
||++|+.++ .|+++|+|||+++|+ .+++..
T Consensus 170 al~~A~~~~L~~li~i~~nN~~~i~--------~~~~~~----------------------------------------- 200 (651)
T 2e6k_A 170 AASLAGHWGLSKLIVFWDDNRISID--------GPTDLA----------------------------------------- 200 (651)
T ss_dssp HHHHHHHTTCTTEEEEEEECCEETT--------EEGGGT-----------------------------------------
T ss_pred HHHHHHHcCCCeEEEEEECCCcccc--------cccccc-----------------------------------------
Confidence 999999999 669999999999983 232110
Q ss_pred hhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC----
Q 007443 313 ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG---- 387 (603)
Q Consensus 313 ~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~---- 387 (603)
+..++..+|++|||+++++|||||+++|.++++++++. ++|++||++|+||+||+ .+... +||..+..
T Consensus 201 ----~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~--~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~ 273 (651)
T 2e6k_A 201 ----FTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLD--ERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVE 273 (651)
T ss_dssp ----CCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHS--SSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHH
T ss_pred ----cCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEEEeEeccccc-ccccccccccCCCHHHHH
Confidence 12234678999999999899999999999999999885 89999999999999998 44433 44421100
Q ss_pred ------------------------C----------------------CC---------CCCCC-------CCCCCccHHH
Q 007443 388 ------------------------A----------------------SD---------SNSLP-------FGNYSRTYDD 405 (603)
Q Consensus 388 ------------------------~----------------------~~---------~~~~p-------~~~~~~s~~~ 405 (603)
+ |. ....| ...+++++|+
T Consensus 274 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~ 353 (651)
T 2e6k_A 274 ATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIATRA 353 (651)
T ss_dssp HHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCHHH
T ss_pred HHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHHHH
Confidence 0 00 00111 0023679999
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcch-----hhhhH-hCCCCeeecchhhHHHHHHHHHHhcCC-CeEEEEecHHhH
Q 007443 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSAFL 478 (603)
Q Consensus 406 a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-----~~f~~-~fp~R~id~GIaE~~~vg~AaGlA~~G-~~P~~~~~~~Fl 478 (603)
+++++|.++++.+|+++++++|+++++++ .+|++ +||+||||+||+||+|+++|+|||+.| ++||+++|+.|+
T Consensus 354 a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~ 433 (651)
T 2e6k_A 354 ASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFS 433 (651)
T ss_dssp HHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGG
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHH
Confidence 99999999999999999999999876554 45887 999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Q 007443 479 QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (603)
Q Consensus 479 ~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir 557 (603)
.++++||+. +|++++||+++++++|+ +|++|+|||+++|+++||++|||+|++|+|++|++.+|++|+...++|++||
T Consensus 434 ~~~~~air~-~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i~ 512 (651)
T 2e6k_A 434 DYMRPAIRL-AALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALV 512 (651)
T ss_dssp GGSHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHH-HHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 999999987 69999999999988888 6889999999999999999999999999999999999999987558999999
Q ss_pred eecCCCccccCCCCCCccccccccc---C--CcEEEEEecHHHHHHHHhh
Q 007443 558 YPRGAIVRTDLPGYRGIPIEVVTRH---A--SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 558 ~~r~~~~~~~~~~~~~~~~~~Gka~---G--~dvtIIa~G~~v~~al~~~ 602 (603)
++|+.++. ++......++.|+.. | .|++||++|.+|+.|+++.
T Consensus 513 ~~r~~~~~--~~~~~~~~~~~G~~vl~~g~~~dv~iva~G~~v~~al~Aa 560 (651)
T 2e6k_A 513 LTRQAVPL--LSPEKARGLLRGGYVLEDVEEPQGVLVATGSEVHLALRAQ 560 (651)
T ss_dssp CCSSCBCC--CCHHHHGGGGGSSEEEECCSSCSEEEEECTTHHHHHHHHH
T ss_pred EeCCCCCC--CCcchhhhhcCCCEEEeeCCCCCEEEEEECHHHHHHHHHH
Confidence 99987642 221101135555321 5 8999999999999999874
No 13
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=4e-79 Score=710.23 Aligned_cols=513 Identities=14% Similarity=0.127 Sum_probs=397.9
Q ss_pred CCcCccCCCChhhhccCCHHHHH-HHHHHHHHHHHHHHhc-C------CCcccCccchHHHHHHHHhh-ccC-----CCc
Q 007443 78 PTPILDLVENPLRLKSLTIKELK-QLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHHV-FHA-----PVD 143 (603)
Q Consensus 78 ~~~~l~~i~~p~~~k~l~~~~L~-~la~~iR~~ii~~v~~-~------gGHlgsslg~~el~~aL~~v-f~~-----p~D 143 (603)
.||+|++|+.|++.+.....+|+ ++|++||+.++++|++ + |||+|+++|++|++.+||+. |+. ++|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 57999999888888877777999 8999999999999984 6 89999999999999999875 675 678
Q ss_pred eeeecCCchH---HHHHHHhcch--hHhhHhhh---cCCCCCCCCCCCCCC-CCcCcCchhhhHHHHHHHHHHHHH----
Q 007443 144 KILWDVGEQT---YAHKILTGRR--SLIHTLRK---KDGISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI---- 210 (603)
Q Consensus 144 ~ii~d~GH~a---Y~~~~LtGr~--~~~~~~R~---~ggl~g~~~~~es~~-d~~~~G~~G~~is~A~G~A~A~~l---- 210 (603)
||||+||++ |+|++|+||. ++|.+||| .+|+++||++.++++ +.|++||+|+|+++|+|+|+|+++
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999995 89999999 569999999999987 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCccccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchh---hhhhhhhhhhhhh
Q 007443 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINA---LSSTLSRIQSSKS 283 (603)
Q Consensus 211 ---~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~---ls~~l~~~~~~~~ 283 (603)
++.+++||||+|||+|+||++|||||+|+.++ .|||||||||+|+|+ .++++ +...|.++..+..
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~--------~~v~~~~~~~~~l~~~~~~~G 286 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLD--------GPVTGNGKIINELEGIFEGAG 286 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSS--------SBSCTTSCHHHHHHHHHHHTT
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccC--------CCccccccccHHHHHHHHhCC
Confidence 77899999999999999999999999999999 789999999999993 34554 4556665554444
Q ss_pred HHHHHHH----Hhhhhhcc-ccchhHHHHhHHH------------hhhccCCCC---hhhHHhh---cCCeEEeecCCCC
Q 007443 284 FRQLREV----AKGMTKRI-GRGMHEWAAKVDE------------YARGMIGPQ---GSTLFEE---LGLYYIGPVDGHN 340 (603)
Q Consensus 284 ~~~~r~~----~~~~~~~~-g~~~~~~~~~~~~------------~~~~~~~~~---~~~lfea---~G~~~ig~vDGhD 340 (603)
|..++.. .+.++++- ++.+.+.+.++.+ ++|..+... ...+.+. .|+.|+ ++||||
T Consensus 287 ~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD 365 (886)
T 2qtc_A 287 WNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHD 365 (886)
T ss_dssp CEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGC
T ss_pred CCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCC
Confidence 4322110 11112111 2233333333333 333322111 1122222 388899 999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc--hhhhc-c--------------------------cCC---
Q 007443 341 IEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE--AIEKQ-Q--------------------------EGA--- 388 (603)
Q Consensus 341 ~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~--~~g~~-~--------------------------~~~--- 388 (603)
+++|++++++|++. .++|++||++|+||+||+++++.+ +|+.. + ..+
T Consensus 366 ~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~ 444 (886)
T 2qtc_A 366 PKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEG 444 (886)
T ss_dssp HHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTT
T ss_pred HHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccc
Confidence 99999999999986 268999999999999998765443 55421 0 000
Q ss_pred ------------------CCC-----C--CCCC----------CCCCccHHHHHHHHHHHHHhcC---CCEEEEecCCCC
Q 007443 389 ------------------SDS-----N--SLPF----------GNYSRTYDDCFIEALVMEAEKD---KDIVVVHAGMEM 430 (603)
Q Consensus 389 ------------------~~~-----~--~~p~----------~~~~~s~~~a~~~aL~~~~~~d---~~vvvi~aDl~~ 430 (603)
|.+ . .+|. ..+..+++++|+++|.++++++ ++||++++|++.
T Consensus 445 ~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~ 524 (886)
T 2qtc_A 445 SEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEAR 524 (886)
T ss_dssp SHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSG
T ss_pred hHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCcccc
Confidence 000 0 0120 1245789999999999999988 999999999543
Q ss_pred ---C------cc-----hhhhh-----------HhCCCCeeecchhhHHH-H---HHHHHHhcCC--CeEEEEecHHh-H
Q 007443 431 ---D------LS-----LQLFQ-----------EKFPERYFDVGMAEQHA-V---TFSAGLACGG--LKPFCIIPSAF-L 478 (603)
Q Consensus 431 ---~------~~-----l~~f~-----------~~fp~R~id~GIaE~~~-v---g~AaGlA~~G--~~P~~~~~~~F-l 478 (603)
+ ++ ...|. +.||+||||+||+||++ + |+|+|||+.| ++||+.+|++| +
T Consensus 525 ~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~ 604 (886)
T 2qtc_A 525 TFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGF 604 (886)
T ss_dssp GGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSH
T ss_pred ccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHH
Confidence 1 12 13453 67899999999999995 5 7999999999 89999999999 7
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCc----
Q 007443 479 QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP---- 553 (603)
Q Consensus 479 ~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P---- 553 (603)
+|++||+++++++++.++++.+..++. .|++|+|||+.+|+++||++|||+|++|+|++|++.+|++|+...++|
T Consensus 605 qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~ 684 (886)
T 2qtc_A 605 QRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQEN 684 (886)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCce
Confidence 999999999999999999998764433 588999999999999999999999999999999999999998755789
Q ss_pred EEEEeecCC--CccccCCCCCCccccccccc----C----CcEEEEEecHHHHHHHHhh
Q 007443 554 VCFRYPRGA--IVRTDLPGYRGIPIEVVTRH----A----SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 554 ~~ir~~r~~--~~~~~~~~~~~~~~~~Gka~----G----~dvtIIa~G~~v~~al~~~ 602 (603)
++||++|.+ +....+|.+..+.+ +|++. | +||+||++|.+|+.||++.
T Consensus 685 v~i~~~r~~~~~~~p~~~~~~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AA 742 (886)
T 2qtc_A 685 VYYYITTLNENYHMPAMPEGAEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAA 742 (886)
T ss_dssp CEEEEECCSCCBCCCCCCTTCHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEeCCccccCCCCCCcchhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHH
Confidence 999999975 31112232111233 56654 4 7999999999999999873
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.8e-79 Score=700.49 Aligned_cols=446 Identities=19% Similarity=0.206 Sum_probs=379.7
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHh---hcc------CCCceeeecCCchH---HHHHHHhcc--
Q 007443 98 ELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT---YAHKILTGR-- 162 (603)
Q Consensus 98 ~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~---vf~------~p~D~ii~d~GH~a---Y~~~~LtGr-- 162 (603)
+|+++|++||..+++++. +++||+|++||++|++++||+ .|| .+||+||||+||++ |++++|+|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 367889999999999998 599999999999999999997 444 23899999999999 999999999
Q ss_pred -hhHhhHhhhcCC-CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCccccch
Q 007443 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (603)
Q Consensus 163 -~~~~~~~R~~gg-l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g----------~~~~Vv~viGDGal~eG~ 230 (603)
.+++.+|||.++ ++|||++.+++++.+++|++|+++++|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 589999999975 56999998899999999999999999999999998765 588999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhH
Q 007443 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (603)
Q Consensus 231 ~~EAln~A~~~~-~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (603)
+||||++|++++ .|+|+|+|||+++|+ .+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~i~--------~~~~~~-------------------------------------- 198 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYISID--------GSTSLS-------------------------------------- 198 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCSS--------SBGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCccc--------cchhhc--------------------------------------
Confidence 999999999999 679999999999983 222110
Q ss_pred HHhhhccCCCChhhHHhhcCCeEEeecCC-CCHHHHHHHHHHHHhcCCCCcEEEEEEeecCCCCCcccCCc-hhhhcccC
Q 007443 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE-AIEKQQEG 387 (603)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~ig~vDG-hD~~~l~~al~~a~~~~~~gP~lI~v~T~kG~G~~~ae~~~-~~g~~~~~ 387 (603)
+..+...+|++|||+++++||| ||+++|.++++++++. .++|++||++|+||+|++ .|... +|+..+..
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~~~~~~H~~~~~~ 269 (673)
T 1r9j_A 199 -------FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQGTEKVHGAPLGE 269 (673)
T ss_dssp -------CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TTTSGGGTSSCCCH
T ss_pred -------cCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cCCCcccccCCCCH
Confidence 0223467899999999988999 9999999999999873 289999999999999998 44433 44421100
Q ss_pred ---------------C-------------------------------------CC---------CCCCCCC--------C
Q 007443 388 ---------------A-------------------------------------SD---------SNSLPFG--------N 398 (603)
Q Consensus 388 ---------------~-------------------------------------~~---------~~~~p~~--------~ 398 (603)
. |. ...+|.. .
T Consensus 270 ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~~~ 349 (673)
T 1r9j_A 270 EDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTNS 349 (673)
T ss_dssp HHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCCCC
T ss_pred HHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccccc
Confidence 0 00 0011110 2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch--hh-----hhH-hCCCCeeecchhhHHHHHHHHHHhcC-CCeE
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL--QL-----FQE-KFPERYFDVGMAEQHAVTFSAGLACG-GLKP 469 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l--~~-----f~~-~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P 469 (603)
++++++++++++|.++++++|+++++++|+++++++ .+ |++ +||+||||+||+||+|+++|+|||+. |++|
T Consensus 350 ~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~~P 429 (673)
T 1r9j_A 350 SAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIP 429 (673)
T ss_dssp SCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCCEE
Confidence 467999999999999999999999999999866554 23 887 99999999999999999999999999 6999
Q ss_pred EEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC-CCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh
Q 007443 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (603)
Q Consensus 470 ~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~-~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~ 548 (603)
|+++|++|++++++||++ +|++++||+++++++|+ +|++|+|||+++|+++||+||||+|++|+|++|++++|++|+.
T Consensus 430 ~~~~~~~F~~~~~~~ir~-~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~ 508 (673)
T 1r9j_A 430 FGGTFLNFIGYALGAVRL-AAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALS 508 (673)
T ss_dssp EEEEEGGGGGGGHHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHH-HHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999998 69999999999998888 6899999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeecCCCccccCCCCCCc-cccccccc---C--CcEEEEEecHHHHHHHHhh
Q 007443 549 IDDRPVCFRYPRGAIVRTDLPGYRGI-PIEVVTRH---A--SCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 549 ~~~~P~~ir~~r~~~~~~~~~~~~~~-~~~~Gka~---G--~dvtIIa~G~~v~~al~~~ 602 (603)
..++|++||++|+..+. ++.+ .+ .+++|... | +|+|||++|.+|+.||++.
T Consensus 509 ~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~Ga~vl~~g~~~dv~lia~G~~v~~al~Aa 565 (673)
T 1r9j_A 509 SIHTPTVLCLSRQNTEP--QSGS-SIEGVRHGAYSVVDVPDLQLVIVASGSEVSLAVDAA 565 (673)
T ss_dssp CTTCCEEEECCSSEECC--CTTC-CHHHHHTSCEEEECCTTCSEEEEECGGGHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCC--CCCc-ccccccCCCEEEeeCCCCCEEEEEechhHHHHHHHH
Confidence 55899999999987542 2222 33 46777322 5 8999999999999999874
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.8e-54 Score=495.57 Aligned_cols=426 Identities=11% Similarity=0.084 Sum_probs=327.0
Q ss_pred cCCCcccCccchHHHHHHHHhhcc-CCCce-eeecCCchH---HHHHHHhcc-----------hhHhhH-hhhc---CCC
Q 007443 116 KTEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTGR-----------RSLIHT-LRKK---DGI 175 (603)
Q Consensus 116 ~~gGHlgsslg~~el~~aL~~vf~-~p~D~-ii~d~GH~a---Y~~~~LtGr-----------~~~~~~-~R~~---ggl 175 (603)
+..||+|+++|++++.+.+.++.. ..||+ ||+++||.+ |+..+|.|. .+.|.+ |||+ +|+
T Consensus 80 a~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~ 159 (845)
T 3ahc_A 80 RLVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGI 159 (845)
T ss_dssp SCCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSB
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCC
Confidence 678999999999999543333322 35899 799999998 999999997 355655 5665 569
Q ss_pred CCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccch---HHHHHHHhhhcC-CCEEEEEEC
Q 007443 176 SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILND 251 (603)
Q Consensus 176 ~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~---~~EAln~A~~~~-~nlivIlnd 251 (603)
+|||.+ +.++...++|++|+|++.|+|||+ .+++.+|+|++|||+..+|. .||+.++|...+ .||++|+++
T Consensus 160 pgHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 160 PSHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp CSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 999975 688889999999999999999995 37789999999999999999 999999999887 999999999
Q ss_pred CCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe
Q 007443 252 SRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY 331 (603)
Q Consensus 252 N~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~ 331 (603)
|+++|+ |++. .. .+ ..++. ..+|++|||+
T Consensus 235 N~~~i~-----g~t~-l~-------~~-----------------------------~~e~l---------~~rf~a~Gw~ 263 (845)
T 3ahc_A 235 NGYKIA-----NPTI-LA-------RI-----------------------------SDEEL---------HDFFRGMGYH 263 (845)
T ss_dssp CSBSSS-----SBCH-HH-------HS-----------------------------CHHHH---------HHHHHHTTEE
T ss_pred CCCcCC-----CCcc-cc-------cc-----------------------------CcHHH---------HHHHHHCCCE
Confidence 999983 3321 00 00 01111 4679999999
Q ss_pred EEeecCC-C--CHHHHHHHHHH---------------HHhcCCCCc--EEEEEEeecCC-------CCCcccCCc-hhhh
Q 007443 332 YIGPVDG-H--NIEDLISVLQE---------------VASLGSMGP--VLVHVVTEENR-------RAEDTQKSE-AIEK 383 (603)
Q Consensus 332 ~ig~vDG-h--D~~~l~~al~~---------------a~~~~~~gP--~lI~v~T~kG~-------G~~~ae~~~-~~g~ 383 (603)
++..||| | |+++|.++|.+ +++...++| ++|+++|+||+ |. +.|+.. +||.
T Consensus 264 v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~-~~eg~~~~H~~ 342 (845)
T 3ahc_A 264 PYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGK-KTEGSWRAHQV 342 (845)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTE-ECTTSGGGSSC
T ss_pred EeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCc-ccCCCccccCC
Confidence 9767899 9 99999987642 222112689 99999999999 98 466554 5543
Q ss_pred cccC------------------CC------------------C----C-------------C--CCCC-C----------
Q 007443 384 QQEG------------------AS------------------D----S-------------N--SLPF-G---------- 397 (603)
Q Consensus 384 ~~~~------------------~~------------------~----~-------------~--~~p~-~---------- 397 (603)
++.. +| . + . .+|. .
T Consensus 343 pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~ 422 (845)
T 3ahc_A 343 PLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEY 422 (845)
T ss_dssp SCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHH
T ss_pred CCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccccc
Confidence 3211 00 0 0 0 0110 0
Q ss_pred --C-CCccHHHHHHHHHHHHHhcCCC-EEEEecCCCCCcchhhhhHh---------C--C--------CCeeecchhhHH
Q 007443 398 --N-YSRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQEK---------F--P--------ERYFDVGMAEQH 454 (603)
Q Consensus 398 --~-~~~s~~~a~~~aL~~~~~~d~~-vvvi~aDl~~~~~l~~f~~~---------f--p--------~R~id~GIaE~~ 454 (603)
. .....+.+++++|.++++.+|+ ++++++|+.+++++..|.+. + | +|||+ ||+||+
T Consensus 423 ~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~ 501 (845)
T 3ahc_A 423 GHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQ 501 (845)
T ss_dssp CTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHH
T ss_pred cCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHH
Confidence 1 1224578889999999999999 99999999999998887777 7 7 89999 999999
Q ss_pred HHHHHHHHhcCCCeEEEEecHHhH---HHHHHH----HHHHhhcC----CC-CeEEEEeCCCC-CCCCCCCCCCh--hhH
Q 007443 455 AVTFSAGLACGGLKPFCIIPSAFL---QRAYDQ----VVNDVDQQ----RL-PVRFVITSAGL-VGSDGPTQCGA--FDI 519 (603)
Q Consensus 455 ~vg~AaGlA~~G~~P~~~~~~~Fl---~ra~dQ----i~~~~a~~----~l-pV~~~~~~~G~-~g~dG~tH~~~--~di 519 (603)
|+|+++|||+.|.+||+.+|++|+ .|+++| ||++++.+ .. +|+++++++|+ .|+||+|||.+ +|+
T Consensus 502 M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~ 581 (845)
T 3ahc_A 502 CEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSL 581 (845)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHH
T ss_pred HHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHH
Confidence 999999999999999999988887 899999 99984443 44 79999999999 69999999995 555
Q ss_pred HHHh---cCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCccccCCCCCCc---ccccccc-------c--C-
Q 007443 520 TFMS---CLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI---PIEVVTR-------H--A- 583 (603)
Q Consensus 520 a~lr---~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~---~~~~Gka-------~--G- 583 (603)
..++ .+|||+|+.|+|++|+..+++.|+...+.|.+++++|++.+... ..+. .+..|++ + |
T Consensus 582 l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~~---~~~~a~~~~~~G~~v~~~as~d~~g~ 658 (845)
T 3ahc_A 582 LINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWV---TLDEARAELEAGAAEWKWASNAENND 658 (845)
T ss_dssp HGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEECS---CHHHHHHHHHHSEEECTTTCCCSSTT
T ss_pred HHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccC---CchhhhhhhcCCeEEEEeecccccCC
Confidence 5554 67999999999999999999999875455555555999865321 1111 2334432 1 3
Q ss_pred -CcEEEEEecHHHH-HHHHhh
Q 007443 584 -SCTCLIITFEMLL-CFLHVL 602 (603)
Q Consensus 584 -~dvtIIa~G~~v~-~al~~~ 602 (603)
.||+||++|+++. .||++.
T Consensus 659 ~~DVvLiAtGsev~~EAL~AA 679 (845)
T 3ahc_A 659 EVQVVLASAGDVPTQELMAAS 679 (845)
T ss_dssp TCSEEEEEESHHHHHHHHHHH
T ss_pred CCCEEEEEeccHHHHHHHHHH
Confidence 7999999996655 488763
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=3.7e-50 Score=468.90 Aligned_cols=452 Identities=13% Similarity=0.115 Sum_probs=308.7
Q ss_pred ccCCHHHHHHHHHHH---HHHHHHHHh-cCCCcccCccchHHHHHHHHhhcc-----CCCceeeecCCchHHHHHHH--h
Q 007443 92 KSLTIKELKQLAVEI---RSELSSIVS-KTEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (603)
Q Consensus 92 k~l~~~~L~~la~~i---R~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf~-----~p~D~ii~d~GH~aY~~~~L--t 160 (603)
.+++.+++..+.+.| |.+--.+.. ..+|-.-+..|..-+..++.+.++ .+.|.++ ...|..-.+.+. .
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~-g~~hRg~~~~Lan~~ 271 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVL-GMAHRGRLNVLVNVL 271 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEe-cCCCcCHHHHHHHHh
Confidence 468888888887665 433333333 223322235666666666555443 2456555 223443344444 3
Q ss_pred cc--hhHhhHhhhc-CCCCC------CCCCCC-------C--CCCCcCcCchhhhHHHHHHHHHHHHHcC-----CCCeE
Q 007443 161 GR--RSLIHTLRKK-DGISG------YTSRSE-------S--EYDPFNAGHGCNSVSAGLGMAVARDIKG-----KRECI 217 (603)
Q Consensus 161 Gr--~~~~~~~R~~-ggl~g------~~~~~e-------s--~~d~~~~G~~G~~is~A~G~A~A~~l~g-----~~~~V 217 (603)
|. .+-|..|... .+.+| |.-... + -...+..+|+|+++|+|+|+|+|+++++ .+..+
T Consensus 272 G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~v 351 (933)
T 2jgd_A 272 GKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLP 351 (933)
T ss_dssp CCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEE
T ss_pred CCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEE
Confidence 43 4455555432 12111 100000 0 0113678999999999999999999874 67899
Q ss_pred EEEEcCCcc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCcc-cchhhhhhhhhhhhhhhHHHHHHHHh
Q 007443 218 VTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKT-SINALSSTLSRIQSSKSFRQLREVAK 292 (603)
Q Consensus 218 v~viGDGal-~eG~~~EAln~A~~~~~n---livIlndN~~si~~t~~~g~s~-~vg~ls~~l~~~~~~~~~~~~r~~~~ 292 (603)
||++|||++ ++|++|||||+|+.++.| +|+||+||++++ ++ +++.. .
T Consensus 352 v~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~i--------st~~~~~~-------~------------- 403 (933)
T 2jgd_A 352 ITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGF--------TTSNPLDA-------R------------- 403 (933)
T ss_dssp EEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC----------------------------------------
T ss_pred EEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccc--------cCCCHHhc-------c-------------
Confidence 999999998 899999999999999989 999999999988 33 33210 0
Q ss_pred hhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCC
Q 007443 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENR 370 (603)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~ 370 (603)
. +++...+++++||+++ .|||+|++++++++++|++.. .++|++|++.|+|++
T Consensus 404 ----------------~--------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~ 458 (933)
T 2jgd_A 404 ----------------S--------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp ---------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred ----------------c--------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec
Confidence 0 0112456788999999 899999999999998887421 278999999999999
Q ss_pred CCCcccCCc---------hh----------------h----hc---------------c---cC-CCCC-----------
Q 007443 371 RAEDTQKSE---------AI----------------E----KQ---------------Q---EG-ASDS----------- 391 (603)
Q Consensus 371 G~~~ae~~~---------~~----------------g----~~---------------~---~~-~~~~----------- 391 (603)
|+...+... |. | +. . +. +|..
T Consensus 459 GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~ 538 (933)
T 2jgd_A 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLN 538 (933)
T ss_dssp -----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSS
T ss_pred CcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccc
Confidence 986653210 10 1 00 0 00 0000
Q ss_pred --------C---------------CCCC--------------------CCCCccHHHHHHHHHHHHHhcCCCEEEEecCC
Q 007443 392 --------N---------------SLPF--------------------GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428 (603)
Q Consensus 392 --------~---------------~~p~--------------------~~~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl 428 (603)
+ ..|. +.+.++|..+++.+|.+++++|++|+++++|+
T Consensus 539 ~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv 618 (933)
T 2jgd_A 539 HEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDS 618 (933)
T ss_dssp CCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred cccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCcc
Confidence 0 0010 01135778899999999999999999999999
Q ss_pred CCC------------------cchhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCe--EEEEe-cHHhHH---HHHH
Q 007443 429 EMD------------------LSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLK--PFCII-PSAFLQ---RAYD 483 (603)
Q Consensus 429 ~~~------------------~~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~--P~~~~-~~~Fl~---ra~d 483 (603)
+.+ +.+..|.++| |+||||+||+|++++|+|+|+|+.|++ ||++. |++|++ |++|
T Consensus 619 ~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~D 698 (933)
T 2jgd_A 619 GRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 (933)
T ss_dssp TTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHH
T ss_pred CCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHH
Confidence 875 4467899999 999999999999999999999999988 99985 999996 9999
Q ss_pred HHHHHh-hc--CCCCeEEEEeCCCCCCCCCCCCCC--hhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCC-CCcEEEE
Q 007443 484 QVVNDV-DQ--QRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCFR 557 (603)
Q Consensus 484 Qi~~~~-a~--~~lpV~~~~~~~G~~g~dG~tH~~--~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~-~~P~~ir 557 (603)
|+++++ ++ +++||++++++ |+.| .|++||+ .+++..++++|||+|++|+|+.|+++||++++.++ ++|++||
T Consensus 699 Qii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~ 776 (933)
T 2jgd_A 699 QFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVM 776 (933)
T ss_dssp HTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred HHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987 64 69999999998 6655 4999998 56666666779999999999999999999985444 8999999
Q ss_pred eecCCCcc-ccCC-----CCCCccccccccc---CCcEE-EEEecHHHHHHH
Q 007443 558 YPRGAIVR-TDLP-----GYRGIPIEVVTRH---ASCTC-LIITFEMLLCFL 599 (603)
Q Consensus 558 ~~r~~~~~-~~~~-----~~~~~~~~~Gka~---G~dvt-IIa~G~~v~~al 599 (603)
+||..+.. ..++ ..+.+.+++|+++ |+||+ +|.+|.+++.+|
T Consensus 777 ~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~g~dV~~vI~~~G~v~~~l 828 (933)
T 2jgd_A 777 SPKSLLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDL 828 (933)
T ss_dssp ECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCCGGGCCEEEEECTTHHHHH
T ss_pred ecchhccCCCCcCCccccCCCceeecCCcceEeecCcceEEEEEchHHHHHH
Confidence 99987631 1121 0135667889876 88995 444444444444
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=7.5e-48 Score=447.22 Aligned_cols=453 Identities=13% Similarity=0.101 Sum_probs=307.4
Q ss_pred ccCCHHHHHHHHHHH---HHHHHHHHh-cCCCcccCccchHHHHHHHHhhcc-----CCCceeeecCCchHHHHHHH--h
Q 007443 92 KSLTIKELKQLAVEI---RSELSSIVS-KTEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (603)
Q Consensus 92 k~l~~~~L~~la~~i---R~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf~-----~p~D~ii~d~GH~aY~~~~L--t 160 (603)
.+++.+++..+.+.| |.+-..+.. ..+|-..+..|..-+.+++-..++ .+.|.++ ...|..-.+.+. .
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~Lan~~ 191 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 191 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 578999988887765 433333333 223333344666656555554443 3556555 222333233333 3
Q ss_pred cc--hhHhhHhhhc-CCC--------CCCCCCCC---C--------CCCCcCcCchhhhHHHHHHHHHHHHHcC------
Q 007443 161 GR--RSLIHTLRKK-DGI--------SGYTSRSE---S--------EYDPFNAGHGCNSVSAGLGMAVARDIKG------ 212 (603)
Q Consensus 161 Gr--~~~~~~~R~~-ggl--------~g~~~~~e---s--------~~d~~~~G~~G~~is~A~G~A~A~~l~g------ 212 (603)
|. .+-|..|... .+. +.|.-... . -.....+||+|+++++|+|+|+|.++++
T Consensus 192 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~ 271 (868)
T 2yic_A 192 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 271 (868)
T ss_dssp CCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCccc
Confidence 42 2333333221 010 11100000 0 0012357899999999999999988754
Q ss_pred ----CCCeEEEEEcCCcc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhH
Q 007443 213 ----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (603)
Q Consensus 213 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~ 284 (603)
.+..+||++|||++ ++|.+|||||+|+.++.| +|+||+||++++. ++... .
T Consensus 272 ~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~s--------t~~~~-------~------ 330 (868)
T 2yic_A 272 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT--------TAPTD-------S------ 330 (868)
T ss_dssp SSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT--------BCHHH-------H------
T ss_pred ccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccc--------cCccc-------c------
Confidence 56789999999996 799999999999999976 9999999999872 22100 0
Q ss_pred HHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEE
Q 007443 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLV 362 (603)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI 362 (603)
+. .++...+++++||+++ .|||||++++++++++|.+.. .++|++|
T Consensus 331 -----------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~PvlI 378 (868)
T 2yic_A 331 -----------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVVI 378 (868)
T ss_dssp -----------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred -----------------------------cc--ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 00 1122456889999999 899999999999998876421 2799999
Q ss_pred EEEeecCCCCCcccCCc---------hh----------------h----hcc------------------cC-CC-C---
Q 007443 363 HVVTEENRRAEDTQKSE---------AI----------------E----KQQ------------------EG-AS-D--- 390 (603)
Q Consensus 363 ~v~T~kG~G~~~ae~~~---------~~----------------g----~~~------------------~~-~~-~--- 390 (603)
+++|+|++|++..+... |. | .++ +. ++ .
T Consensus 379 e~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~ 458 (868)
T 2yic_A 379 DMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEP 458 (868)
T ss_dssp EEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999998765311 10 0 000 00 00 0
Q ss_pred --------------CC---------------CCCCC---CCCc----cHHH----------HHHHHHH--HHHhcCCCEE
Q 007443 391 --------------SN---------------SLPFG---NYSR----TYDD----------CFIEALV--MEAEKDKDIV 422 (603)
Q Consensus 391 --------------~~---------------~~p~~---~~~~----s~~~----------a~~~aL~--~~~~~d~~vv 422 (603)
.+ ..|.+ ...+ ..|. +++++|. .+++++++|+
T Consensus 459 ~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~ 538 (868)
T 2yic_A 459 SESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVR 538 (868)
T ss_dssp -------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred ccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 00 01110 0011 1122 3344433 5689999999
Q ss_pred EEecCCCCCc------------------chhhh------hH-hCCCCeeecchhhHHHHHHHHHHhcCC--CeEEEEe-c
Q 007443 423 VVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGG--LKPFCII-P 474 (603)
Q Consensus 423 vi~aDl~~~~------------------~l~~f------~~-~fp~R~id~GIaE~~~vg~AaGlA~~G--~~P~~~~-~ 474 (603)
++++|++.++ .+.+| ++ .+|+||||+||+|++++|+|+|+|+.| .+|++++ |
T Consensus 539 ~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf 618 (868)
T 2yic_A 539 LSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQF 618 (868)
T ss_dssp EEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred EEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEeh
Confidence 9999998752 24678 55 679999999999999999999999999 4667777 9
Q ss_pred HHhHHHH---HHHHHHHhh---cCCCCeEEEEeCCCCCCCCCCCCCC--hhhHHHHhcCCCcEEEecCCHHHHHHHHHHH
Q 007443 475 SAFLQRA---YDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (603)
Q Consensus 475 ~~Fl~ra---~dQi~~~~a---~~~lpV~~~~~~~G~~g~dG~tH~~--~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 546 (603)
++|+.+| +||+++++. .+++||+++++++| .| +|++||+ .|++..|+++|||+|++|+|+.|++++|+++
T Consensus 619 ~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a 696 (868)
T 2yic_A 619 GDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRH 696 (868)
T ss_dssp GGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHH
Confidence 9999887 999999862 46999999999977 66 9999998 7888888999999999999999999999998
Q ss_pred HhCC-CCcEEEEeecCCCcc-ccCCC-----CCCccccccccc-------CCcE--EEEEecHHHHHHHHh
Q 007443 547 ASID-DRPVCFRYPRGAIVR-TDLPG-----YRGIPIEVVTRH-------ASCT--CLIITFEMLLCFLHV 601 (603)
Q Consensus 547 ~~~~-~~P~~ir~~r~~~~~-~~~~~-----~~~~~~~~Gka~-------G~dv--tIIa~G~~v~~al~~ 601 (603)
+..+ ++|++|++||.++.. ..++. ++.+..++|+++ |+|| |||+||.+ +.+|++
T Consensus 697 ~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~a 766 (868)
T 2yic_A 697 GKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAA 766 (868)
T ss_dssp HHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHH
T ss_pred HhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHH
Confidence 6652 499999999987642 11111 112333788852 8899 99999998 666643
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.9e-47 Score=448.84 Aligned_cols=453 Identities=12% Similarity=0.081 Sum_probs=307.0
Q ss_pred ccCCHHHHHHHHHHH---HHHHHHHHh-cCCCcccCccchHHHHHHHHhhcc-----CCCceeeecCCchHHHHHHH--h
Q 007443 92 KSLTIKELKQLAVEI---RSELSSIVS-KTEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (603)
Q Consensus 92 k~l~~~~L~~la~~i---R~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf~-----~p~D~ii~d~GH~aY~~~~L--t 160 (603)
.+++.+++..+.+.| |.+-..+.. ..+|-..+..|..-+.+++...++ .+.|.++ ...|..-.+.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 578899988887765 433333333 223333344666666666555443 3556555 222333233333 3
Q ss_pred cc--hhHhhHhhhc-CCC--------CCCCCCCC---C--------CCCCcCcCchhhhHHHHHHHHHHHHHcC------
Q 007443 161 GR--RSLIHTLRKK-DGI--------SGYTSRSE---S--------EYDPFNAGHGCNSVSAGLGMAVARDIKG------ 212 (603)
Q Consensus 161 Gr--~~~~~~~R~~-ggl--------~g~~~~~e---s--------~~d~~~~G~~G~~is~A~G~A~A~~l~g------ 212 (603)
|. .+-|..|... .+. +.|.-... . -.....+||+|++++.|+|+|+|.++++
T Consensus 437 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~ 516 (1113)
T 2xt6_A 437 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 516 (1113)
T ss_dssp CCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCcc
Confidence 42 2333333221 011 11100000 0 0012357899999999999999998865
Q ss_pred ----CCCeEEEEEcCCcc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhH
Q 007443 213 ----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (603)
Q Consensus 213 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---livIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~ 284 (603)
.+..+||++|||++ ++|.+|||||+|+.++.| +|+||+||++++. ++... .
T Consensus 517 ~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gis--------t~~~~-------~------ 575 (1113)
T 2xt6_A 517 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT--------TAPTD-------S------ 575 (1113)
T ss_dssp SBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT--------BCHHH-------H------
T ss_pred ccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccc--------cCccc-------c------
Confidence 56889999999995 899999999999999976 9999999999872 22100 0
Q ss_pred HHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEE
Q 007443 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLV 362 (603)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI 362 (603)
+. .++...+++++||+++ .|||||++++++++++|.+.. .++|++|
T Consensus 576 -----------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~PvlI 623 (1113)
T 2xt6_A 576 -----------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVVI 623 (1113)
T ss_dssp -----------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred -----------------------------cc--ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00 0112456889999999 899999999999998876521 2799999
Q ss_pred EEEeecCCCCCcccCCc---------h----------------hh----hcc------------------cC-CC-C---
Q 007443 363 HVVTEENRRAEDTQKSE---------A----------------IE----KQQ------------------EG-AS-D--- 390 (603)
Q Consensus 363 ~v~T~kG~G~~~ae~~~---------~----------------~g----~~~------------------~~-~~-~--- 390 (603)
+++|+|++|++..+... + .| .++ +. ++ .
T Consensus 624 e~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~ 703 (1113)
T 2xt6_A 624 DMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEP 703 (1113)
T ss_dssp EEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999998765311 0 00 000 00 01 0
Q ss_pred --------------CC---------------CCCCC----CCC---ccHHHH------HHHHHH------HHHhcCCCEE
Q 007443 391 --------------SN---------------SLPFG----NYS---RTYDDC------FIEALV------MEAEKDKDIV 422 (603)
Q Consensus 391 --------------~~---------------~~p~~----~~~---~s~~~a------~~~aL~------~~~~~d~~vv 422 (603)
.+ ..|.+ ++- ..-|.. +..++. .+++++++|+
T Consensus 704 ~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~ 783 (1113)
T 2xt6_A 704 SESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVR 783 (1113)
T ss_dssp -------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred ccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 00 01110 000 011211 122333 4489999999
Q ss_pred EEecCCCCCc------------------chhhh------hH-hCCCCeeecchhhHHHHHHHHHHhcCC--CeEEEEe-c
Q 007443 423 VVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGG--LKPFCII-P 474 (603)
Q Consensus 423 vi~aDl~~~~------------------~l~~f------~~-~fp~R~id~GIaE~~~vg~AaGlA~~G--~~P~~~~-~ 474 (603)
++++|++.++ .+.+| .+ .+|+||||+||+|++++|+|+|+|+.| .+|+++. |
T Consensus 784 l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf 863 (1113)
T 2xt6_A 784 LSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQF 863 (1113)
T ss_dssp EEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred EEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEE
Confidence 9999998754 35788 66 679999999999999999999999999 5677777 9
Q ss_pred HHhHHHH---HHHHHHHh---hcCCCCeEEEEeCCCCCCCCCCCCCC--hhhHHHHhcCCCcEEEecCCHHHHHHHHHHH
Q 007443 475 SAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (603)
Q Consensus 475 ~~Fl~ra---~dQi~~~~---a~~~lpV~~~~~~~G~~g~dG~tH~~--~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 546 (603)
++|+++| +||+++++ ..+++||+++++++| .| +|++||+ .|++..|+++|||+|++|+|+.|+++||+++
T Consensus 864 ~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a 941 (1113)
T 2xt6_A 864 GDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRH 941 (1113)
T ss_dssp GGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHH
Confidence 9999887 99999986 357999999999977 66 9999999 5666666999999999999999999999998
Q ss_pred HhCC-CCcEEEEeecCCCcc-ccCCC-----CCCccccccccc-------CCcE--EEEEecHHHHHHHHh
Q 007443 547 ASID-DRPVCFRYPRGAIVR-TDLPG-----YRGIPIEVVTRH-------ASCT--CLIITFEMLLCFLHV 601 (603)
Q Consensus 547 ~~~~-~~P~~ir~~r~~~~~-~~~~~-----~~~~~~~~Gka~-------G~dv--tIIa~G~~v~~al~~ 601 (603)
+..+ ++|++|++||.++.. ..++. ++.+..++|+++ |+|| |||+||.+ +.+|++
T Consensus 942 ~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~a 1011 (1113)
T 2xt6_A 942 GKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAA 1011 (1113)
T ss_dssp HHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHH
T ss_pred HhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHH
Confidence 7653 499999999987642 11111 112333788853 8999 99999998 666653
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.6e-41 Score=362.27 Aligned_cols=233 Identities=18% Similarity=0.246 Sum_probs=161.6
Q ss_pred EeecCCCCCc-ccCCc--hhhh-cccCCCCCCCCCCCC--CCccHHHHHHHHHHHHHhcCCCEEEEecCCCC---Ccc-h
Q 007443 365 VTEENRRAED-TQKSE--AIEK-QQEGASDSNSLPFGN--YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM---DLS-L 434 (603)
Q Consensus 365 ~T~kG~G~~~-ae~~~--~~g~-~~~~~~~~~~~p~~~--~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~---~~~-l 434 (603)
.|.|||||++ ||++. ||.. ++.... ....+... .+++|+++|+++|.+++++|++|+++++|++. .++ +
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf~~~g-~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPDLGTD-DDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCcCCCC-CcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 88776 5432 221100 00000000 34689999999999999999999999999973 233 4
Q ss_pred hhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe-cHHhHHHHHHHHHHHhhcC--------CCCeEEEEeCCC
Q 007443 435 QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAG 504 (603)
Q Consensus 435 ~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~-~~~Fl~ra~dQi~~~~a~~--------~lpV~~~~~~~G 504 (603)
..|+++| |+||||+||+||+|+++|+|+|+.|++||+++ |++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 7899999 99999999999999999999999999999995 9999999999999999977 999999999988
Q ss_pred CCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCcEEEEeecCCCcc--ccCCCCCCccccccccc
Q 007443 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEVVTRH 582 (603)
Q Consensus 505 ~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~~Gka~ 582 (603)
.++ +|+|||+.++ ++|+++|||+|++|+|++|++.+|++|+. .++|++||+||..+.. ..++. +++.+++||++
T Consensus 169 ~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~-~~~~~~~G~~~ 244 (369)
T 1ik6_A 169 GTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE-GDYVVEIGKAR 244 (369)
T ss_dssp ------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC-SSCCCCTTCCE
T ss_pred CCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC-CcccccCCceE
Confidence 766 8999998875 99999999999999999999999999976 7899999999987642 23332 35668899875
Q ss_pred ----CCcEEEEEecHHHHHHHHhh
Q 007443 583 ----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 583 ----G~dvtIIa~G~~v~~al~~~ 602 (603)
|.|++||++|.+++.|+++.
T Consensus 245 v~~~g~dv~Iia~G~~v~~a~~Aa 268 (369)
T 1ik6_A 245 VAREGDDVTLVTYGAVVHKALEAA 268 (369)
T ss_dssp EEECCSSEEEEECTTHHHHHHHHH
T ss_pred EEEcCCCEEEEEeCHHHHHHHHHH
Confidence 89999999999999999874
No 20
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=2.7e-38 Score=334.25 Aligned_cols=201 Identities=17% Similarity=0.282 Sum_probs=177.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCC---Ccc-hhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEEe
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM---DLS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~---~~~-l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~ 473 (603)
++++|+++|+++|.+++++|++|+++++|++. .++ +++|+++| |+||||+||+|++|+++|+|+|+.|++||+++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 56899999999999999999999999999983 233 57899999 99999999999999999999999999999995
Q ss_pred -cHHhHHHHHHHHHHHhhc--------CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 -~~~Fl~ra~dQi~~~~a~--------~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|++|++|++|||++++|+ +++||++++++ |..|.+|+|||+.+| ++|+++|||+|++|+|++|++.+++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 999999999999999983 99999999997 777889999988888 9999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCc-cccC-C--CCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIV-RTDL-P--GYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~-~--~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+|+. .++|++||+||..+. ...+ | .++.+.+++||++ |.|++||+||.++..|+++.
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa 235 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAA 235 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHH
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHH
Confidence 9976 589999999987532 1112 1 1235678899875 89999999999999999874
No 21
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.9e-37 Score=325.79 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=176.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEE-ec
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IP 474 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~----~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~-~~ 474 (603)
++|+++|+++|.+++++|++|+++++|++... .+.+|+++| |+||||+||+|++|+++|+|+|+.|++||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 58999999999999999999999999997522 347899999 9999999999999999999999999999998 59
Q ss_pred HHhHHHHHHHHHHHhhc--------CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHH
Q 007443 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (603)
Q Consensus 475 ~~Fl~ra~dQi~~~~a~--------~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 546 (603)
++|++|++|||++++|+ +++||+++.++ |..+.+|++|++ +|.++|+++|||+|++|+|++|++.++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 666778889988 777999999999999999999999999999
Q ss_pred HhCCCCcEEEEeecCCCcc--ccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 547 ASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+. .++|++||+||..+.. ..++. .++.+++||++ |.|++||+||.+++.|+++.
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa 220 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE-GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAA 220 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHH
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC-ccccccCCceEEEecCCCEEEEEecHHHHHHHHHH
Confidence 76 6899999999988642 23332 35678899875 89999999999999999874
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=3.3e-37 Score=323.81 Aligned_cols=199 Identities=20% Similarity=0.239 Sum_probs=177.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEE-e
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~----~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~-~ 473 (603)
+++|+++++++|.+++++|++|+++++|++.+. .+.+|+++| |+||||+||+|++|+++|+|+|+.|++||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 468999999999999999999999999997522 247899999 9999999999999999999999999999998 5
Q ss_pred cHHhHHHHHHHHHHHhhc--------CCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~--------~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 545 (603)
|++|++|++|||++++|+ +++|++++.++ |..+.+|++||+ +|+++|+++|||+|++|+|++|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999985 666778889998 78899999999999999999999999999
Q ss_pred HHhCCCCcEEEEeecCCCcc--ccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
++. .++|++||+||..+.. ..++. +.+.+++||++ |.|++||+||.+++.|+++.
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa 221 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE-EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAA 221 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHH
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC-CCccccCCcceEEecCCCEEEEEecHHHHHHHHHH
Confidence 975 6899999999977532 23432 35678899875 89999999999999999874
No 23
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=2.8e-37 Score=326.71 Aligned_cols=200 Identities=18% Similarity=0.226 Sum_probs=175.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCC-C-c-chhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEE-e
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM-D-L-SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~-~-~-~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~-~ 473 (603)
++.+|+++++++|.+++++|++|+++++|++. + + .+..|+++| |+||||+||+|++|+++|+|+|+.|++||++ +
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 98 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQ 98 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEec
Confidence 45789999999999999999999999999973 1 2 347899999 9999999999999999999999999999998 5
Q ss_pred cHHhHHHHHHHHHHHhhcCCC---------CeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQQRL---------PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~l---------pV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~ 544 (603)
|++|++|++|||++++|+++. ||+++++++|. .+|+|||+.+|+++||++|||+|++|+|++|++.+++
T Consensus 99 f~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~ 176 (342)
T 2bfd_B 99 FADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL 176 (342)
T ss_dssp SGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 999999999999999996554 99999999763 5899999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeecCCCcc--ccCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 545 TVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
+|+. .++|++||+|+..+.. ..++. +++.+++||++ |.|++||+||.+++.|+++.
T Consensus 177 ~a~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa 238 (342)
T 2bfd_B 177 SCIE-DKNPCIFFEPKILYRAAAEEVPI-EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVA 238 (342)
T ss_dssp HHHH-SSSCEEEEEEGGGTTSCCEEEES-SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHH
T ss_pred HHHh-cCCcEEEEecchhcCCCCCCCCC-cccceeCCceEEeccCCCEEEEEECHHHHHHHHHH
Confidence 9976 4899999999655421 12232 35678899865 89999999999999999874
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=8.8e-37 Score=322.40 Aligned_cols=199 Identities=17% Similarity=0.228 Sum_probs=175.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----chhhhhHhC-CCCeeecchhhHHHHHHHHHHhcCCCeEEEE-e
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~----~l~~f~~~f-p~R~id~GIaE~~~vg~AaGlA~~G~~P~~~-~ 473 (603)
+++|+++|+++|.+++++|++|+++++|++... .+..|+++| |+||||+||+|++|+++|+|+|+.|++||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999999999999999999999997422 357899999 9999999999999999999999999999998 5
Q ss_pred cHHhHHHHHHHHHHHhhcCC--------CCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~--------lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 545 (603)
|++|++|++|||++++|+++ +||+++++++| +.+|+|||+.+|+++||++|||+|++|+|++|++.++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999998654 99999999877 579999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEeecCCCcc--c----------------cCCCCCCccccccccc----CCcEEEEEecHHHHHHHHhh
Q 007443 546 VASIDDRPVCFRYPRGAIVR--T----------------DLPGYRGIPIEVVTRH----ASCTCLIITFEMLLCFLHVL 602 (603)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~----------------~~~~~~~~~~~~Gka~----G~dvtIIa~G~~v~~al~~~ 602 (603)
|+.. ++|++||+|+..+.. . .++. ..+.+++||++ |.|++|||+|.+++.|+++.
T Consensus 162 A~~~-~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIEC-DDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD-GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHHS-SSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES-SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHhc-CCcEEEEEchHhhcCcccccccCccchhhcccccccCC-CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 9764 899999998433321 1 1222 24567889875 89999999999999999874
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.97 E-value=6.9e-30 Score=272.52 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=187.1
Q ss_pred hhccCCHHHHHHH---HHHHHHHHHHHHh-cCCCcccCc---cchHHHHHHHHhhccCCCceeeecCCchHHHHHHHhcc
Q 007443 90 RLKSLTIKELKQL---AVEIRSELSSIVS-KTEKSLKSS---LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (603)
Q Consensus 90 ~~k~l~~~~L~~l---a~~iR~~ii~~v~-~~gGHlgss---lg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~LtGr 162 (603)
..++++.++|.++ +.++|.+..+++. ..+||+|++ .|...++++++..|+..+|+||+ +|+.|+|++++|+
T Consensus 29 ~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~ 106 (367)
T 1umd_A 29 FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGI 106 (367)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCC
Confidence 3467888888774 6677999988887 678998755 66677788888889876799997 5678999999998
Q ss_pred --hhHhhHhhhc------C-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHH
Q 007443 163 --RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYE 233 (603)
Q Consensus 163 --~~~~~~~R~~------g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~E 233 (603)
.+.|.+|++. | ++++|+...+ .....++|++|++++.|+|+|+|.++.+++++|||++|||++++|++||
T Consensus 107 ~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~E 185 (367)
T 1umd_A 107 PLKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYA 185 (367)
T ss_dssp CHHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHH
Confidence 5889999884 2 4566775332 2334689999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhh
Q 007443 234 AMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313 (603)
Q Consensus 234 Aln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~ 313 (603)
|||+|+.++.|+++||+||++++ +++....
T Consensus 186 al~~A~~~~lpvi~vv~NN~~gi--------~~~~~~~------------------------------------------ 215 (367)
T 1umd_A 186 GINFAAVQGAPAVFIAENNFYAI--------SVDYRHQ------------------------------------------ 215 (367)
T ss_dssp HHHHHHHTTCSEEEEEEECSEET--------TEEHHHH------------------------------------------
T ss_pred HHHHHHHhCcCEEEEEecCCeee--------ccChhhc------------------------------------------
Confidence 99999999999999999999876 2222100
Q ss_pred hccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc--CCCCcEEEEEEeecCCCCCccc
Q 007443 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 314 ~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~--~~~gP~lI~v~T~kG~G~~~ae 376 (603)
.-.+++..++++|||+++ .|||+|+.+++++++++.+. ..+||++||++|+|++|++.++
T Consensus 216 --~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 216 --THSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp --CSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred --cCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 002344678999999999 89999999999988877552 1379999999999999998874
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.94 E-value=3.2e-25 Score=236.29 Aligned_cols=239 Identities=18% Similarity=0.168 Sum_probs=178.1
Q ss_pred CCCcCccC---CCChhhhccCCHHHHHHHHHHH---HHHHHHHHh--cCC--CcccCccchHHHHHHHHhhccCCCceee
Q 007443 77 EPTPILDL---VENPLRLKSLTIKELKQLAVEI---RSELSSIVS--KTE--KSLKSSLAAVELTVALHHVFHAPVDKIL 146 (603)
Q Consensus 77 ~~~~~l~~---i~~p~~~k~l~~~~L~~la~~i---R~~ii~~v~--~~g--GHlgsslg~~el~~aL~~vf~~p~D~ii 146 (603)
|...+||. +..+..+.+++.++|.++.+.| |.+--.+.. ++| |+..++.|...+.+++...++ |.|.++
T Consensus 21 ~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~ 99 (368)
T 1w85_A 21 PTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFIL 99 (368)
T ss_dssp CEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEE
T ss_pred CeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEE
Confidence 33445552 2344556789999999988876 544322222 222 677789999999999988886 677666
Q ss_pred ecCCchHHHHHHHhcc--hhHhhHhhhc-CCCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcC
Q 007443 147 WDVGEQTYAHKILTGR--RSLIHTLRKK-DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISN 223 (603)
Q Consensus 147 ~d~GH~aY~~~~LtGr--~~~~~~~R~~-ggl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGD 223 (603)
.. |...++.+..|. ..-|..+... .|-+.|+ ......++|++|+++++|+|+|+|.+++++++.|||++||
T Consensus 100 ~~--~R~~~~~~~~G~~~~~~~~el~G~~~G~~~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GD 173 (368)
T 1w85_A 100 PG--YRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGD 173 (368)
T ss_dssp CC--SSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEET
T ss_pred ec--chhHHHHHhcCCCHHHHHHHHCCCCCCCCCCc----ccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEch
Confidence 43 666677777775 3445555443 1222232 2234567899999999999999999999999999999999
Q ss_pred CccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchh
Q 007443 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (603)
Q Consensus 224 Gal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~ 303 (603)
|++++|++||+||+|+.++.|+++||+||++++. +++...
T Consensus 174 Ga~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~--------~~~~~~-------------------------------- 213 (368)
T 1w85_A 174 GGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIS--------TPVEKQ-------------------------------- 213 (368)
T ss_dssp GGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETT--------EEGGGT--------------------------------
T ss_pred hhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccce--------eccccc--------------------------------
Confidence 9999999999999999999999999999998872 222100
Q ss_pred HHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc--CCCCcEEEEEEeecCCCCC-cc
Q 007443 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAE-DT 375 (603)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~--~~~gP~lI~v~T~kG~G~~-~a 375 (603)
.-.+++..+++++||+++ .|||||++++.+++++|++. ..+||+||+++|+|.+||. .+
T Consensus 214 ------------~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~ 275 (368)
T 1w85_A 214 ------------TVAKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275 (368)
T ss_dssp ------------CSCSCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSC
T ss_pred ------------cCCCCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCC
Confidence 002344678999999999 89999999999999998762 1379999999999999998 54
No 27
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.93 E-value=2.1e-24 Score=232.41 Aligned_cols=241 Identities=12% Similarity=0.120 Sum_probs=171.3
Q ss_pred CcCccC---CCChhhhccCCHHHHHHHHHHH---HHHHHHHHh--cCC--CcccCccchHHHHHHHHhhccCCCceeeec
Q 007443 79 TPILDL---VENPLRLKSLTIKELKQLAVEI---RSELSSIVS--KTE--KSLKSSLAAVELTVALHHVFHAPVDKILWD 148 (603)
Q Consensus 79 ~~~l~~---i~~p~~~k~l~~~~L~~la~~i---R~~ii~~v~--~~g--GHlgsslg~~el~~aL~~vf~~p~D~ii~d 148 (603)
..+||. +..|....+++.+++..+.+.| |..--.+.. ++| ++..++.|..-+.+++-..++ +.|.++..
T Consensus 34 ~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~-~~D~v~~~ 112 (400)
T 2bfd_A 34 YRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALD-NTDLVFGQ 112 (400)
T ss_dssp ECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSC-TTSEEECC
T ss_pred eEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcC-CCCEEEec
Confidence 345552 3345555788999988887765 333333332 222 333477888777777666653 67777642
Q ss_pred CCchHHHHHHHhcc--hhHhhHhhhc------C-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEE
Q 007443 149 VGEQTYAHKILTGR--RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (603)
Q Consensus 149 ~GH~aY~~~~LtGr--~~~~~~~R~~------g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~ 219 (603)
|..-++.+..|. .+.|..++.. | +.++|+...+.. ...++|++|+++++|+|+|+|.++++++++|||
T Consensus 113 --yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~-~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~ 189 (400)
T 2bfd_A 113 --AREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERH-FVTISSPLATQIPQAVGAAYAAKRANANRVVIC 189 (400)
T ss_dssp --SCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTT-BCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred --CcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccC-ccccCccccccccHHHHHHHhhhhhCCCCeEEE
Confidence 333355666675 5666777764 2 455665543222 345789999999999999999999999999999
Q ss_pred EEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccc
Q 007443 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (603)
Q Consensus 220 viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (603)
++|||++++|++||+||+|+.++.|+|+||+||++++. +++...
T Consensus 190 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~--------~~~~~~---------------------------- 233 (400)
T 2bfd_A 190 YFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIS--------TPTSEQ---------------------------- 233 (400)
T ss_dssp EEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETT--------EEGGGT----------------------------
T ss_pred EECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeee--------eccccc----------------------------
Confidence 99999999999999999999999999999999998872 222100
Q ss_pred cchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC--CCCcEEEEEEeecCCCCCccc
Q 007443 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~--~~gP~lI~v~T~kG~G~~~ae 376 (603)
+-.+++..+++++||+++ .|||||++++.+++++|++.. .++|+||+++|+|-.|+...+
T Consensus 234 ----------------~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D 295 (400)
T 2bfd_A 234 ----------------YRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSD 295 (400)
T ss_dssp ----------------CSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--
T ss_pred ----------------CCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCC
Confidence 001234677899999999 999999999999998877511 279999999999888877643
No 28
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.92 E-value=6.8e-24 Score=225.64 Aligned_cols=231 Identities=19% Similarity=0.175 Sum_probs=171.6
Q ss_pred ChhhhccCCHHHHHHHHHHH---HHHHHHHHh--cC---CCcccCccchHHHHHHHHhhccCCCceeeecCCchHHHHHH
Q 007443 87 NPLRLKSLTIKELKQLAVEI---RSELSSIVS--KT---EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (603)
Q Consensus 87 ~p~~~k~l~~~~L~~la~~i---R~~ii~~v~--~~---gGHlgsslg~~el~~aL~~vf~~p~D~ii~d~GH~aY~~~~ 158 (603)
.|.+..+++.++|.++.+.| |+.-..+.. ++ .|+..++.|...+.+++...++ |.|.++. +|..++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 35666788999999888776 444333332 33 4777788999999999988886 6787765 377788888
Q ss_pred Hhcc--hhHhhHhhhc-CC----CCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchH
Q 007443 159 LTGR--RSLIHTLRKK-DG----ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA 231 (603)
Q Consensus 159 LtGr--~~~~~~~R~~-gg----l~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~ 231 (603)
..|. .+-|..+... .| .+|..+. .+.....+.|++|+++|+|+|+|+|.+++++++.|||++|||++++|++
T Consensus 101 ~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~-~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~ 179 (365)
T 2ozl_A 101 TRGLSVREILAELTGRKGGCAKGKGGSMHM-YAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQI 179 (365)
T ss_dssp HTTCCHHHHHHHHTTCTTSTTTTSSCTTCC-CBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHH
T ss_pred hcCCCHHHHHHHHcCCCCCCCCCCCCCCCc-CccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHH
Confidence 8886 4556555443 11 1111110 1122233569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHH
Q 007443 232 YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (603)
Q Consensus 232 ~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (603)
||+||+|+.++.|+|+||+||++++ +++....
T Consensus 180 ~Ealn~A~~~~lpvi~vv~NN~~g~--------~t~~~~~---------------------------------------- 211 (365)
T 2ozl_A 180 FEAYNMAALWKLPCIFICENNRYGM--------GTSVERA---------------------------------------- 211 (365)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSEET--------TEEHHHH----------------------------------------
T ss_pred HHHHHHHHHHCcCEEEEEECCCccc--------CCCcccc----------------------------------------
Confidence 9999999999999999999999887 2222100
Q ss_pred hhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc--CCCCcEEEEEEeecCCCCCccc
Q 007443 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (603)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~--~~~gP~lI~v~T~kG~G~~~ae 376 (603)
.-.+++.. +++|++++ .|||||++++++++++|.+. ..+||+|||++|+|.+||..++
T Consensus 212 ----~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D 271 (365)
T 2ozl_A 212 ----AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271 (365)
T ss_dssp ----CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTC
T ss_pred ----cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCC
Confidence 00112223 57899999 89999999999999887642 2379999999999999998654
No 29
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.90 E-value=1.4e-22 Score=218.29 Aligned_cols=230 Identities=15% Similarity=0.093 Sum_probs=160.9
Q ss_pred hccCCHHHHHHHHHHH---HHHHHHHHh--cCC--CcccCccchHHHHHHHHhhccCCCceeeec-CCchHHHHHHHhcc
Q 007443 91 LKSLTIKELKQLAVEI---RSELSSIVS--KTE--KSLKSSLAAVELTVALHHVFHAPVDKILWD-VGEQTYAHKILTGR 162 (603)
Q Consensus 91 ~k~l~~~~L~~la~~i---R~~ii~~v~--~~g--GHlgsslg~~el~~aL~~vf~~p~D~ii~d-~GH~aY~~~~LtGr 162 (603)
..+++.+++.++.+.| |.+--.+.. ++| +...++.|...+.+++-..++ +.|.++.. .|| .+.+..|.
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~-~~D~v~~~yR~~---~~~l~~g~ 143 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALN-RTDMCFPTYRQQ---SILMARDV 143 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSC-TTSEEECCSSCH---HHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcC-CCCEEEecccch---HHHHhcCC
Confidence 3678999988887765 433333322 222 333477888888777766664 67777732 344 33333332
Q ss_pred --hhHhhHhhhc------C-CCCCCCCCCCCCCCCcCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHH
Q 007443 163 --RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYE 233 (603)
Q Consensus 163 --~~~~~~~R~~------g-gl~g~~~~~es~~d~~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~E 233 (603)
.+-|..+... | +.+.|-... .......+|++|+++++|+|+|+|.++++++++|||++|||++++|.+||
T Consensus 144 ~~~~i~~el~g~~~~~~~G~g~~~h~~~~-~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~E 222 (407)
T 1qs0_A 144 SLVEMICQLLSNERDPLKGRQLPIMYSVR-EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222 (407)
T ss_dssp CHHHHHHHHHTCTTCTTTTCSCTTCCCBG-GGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCceeecchh-ccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHH
Confidence 2333333221 1 112121111 11223468999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhh
Q 007443 234 AMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313 (603)
Q Consensus 234 Aln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~ 313 (603)
+||+|+.++.|+|+||+||++++. +++... .
T Consensus 223 al~~A~~~~lpvi~Vv~NN~~gi~--------~~~~~~--------------------------~--------------- 253 (407)
T 1qs0_A 223 ALTFAHVYRAPVILNVVNNQWAIS--------TFQAIA--------------------------G--------------- 253 (407)
T ss_dssp HHHHHHHHTCCEEEEEEECSEETT--------EEGGGG--------------------------T---------------
T ss_pred HHHHHHHHCcCEEEEEECCCccee--------eccccc--------------------------c---------------
Confidence 999999999889999999998872 222100 0
Q ss_pred hccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhc--CCCCcEEEEEEeecCCCCCcccC
Q 007443 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQK 377 (603)
Q Consensus 314 ~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~--~~~gP~lI~v~T~kG~G~~~ae~ 377 (603)
. -.+++..++++|||+++ .|||||++++.+++++|.+. ..+||+||+++|+|++|++.++.
T Consensus 254 ~--~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd 316 (407)
T 1qs0_A 254 G--ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDD 316 (407)
T ss_dssp T--TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCC
T ss_pred C--CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCC
Confidence 0 02244678999999999 89999999999999888652 13799999999999999998863
No 30
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.55 E-value=2.4e-14 Score=161.80 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=120.1
Q ss_pred cchHHHHHHHHhhccCCCceeeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....++-.|...+ .+.+.+++|+| |+.|+++++..+.. .+.+...+.|++|.++++|+|
T Consensus 371 l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~------------------~~~~~~~~~g~~G~~l~~A~G 431 (603)
T 4feg_A 371 LQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS------------------NRHITSNLFATMGVGIPGAIA 431 (603)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT------------------CEEECCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC------------------CceecCcccccccchhHHHhh
Confidence 55555555555554 34567778999 77788866542210 011112346889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
++++ .++++|||++|||+++. .+++|++|+.++.|+++||.||+ +++. +. .+
T Consensus 432 aala----~~~~~vv~~~GDG~~~~--~~~~l~~a~~~~lp~~~vv~nN~~~~~~---------------~~---~~--- 484 (603)
T 4feg_A 432 AKLN----YPERQVFNLAGDGGASM--TMQDLATQVQYHLPVINVVFTNCQYGFI---------------KD---EQ--- 484 (603)
T ss_dssp HHHH----CTTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHHH---------------HH---HH---
T ss_pred HHHh----CCCCcEEEEeccHHHhh--hHHHHHHHHHHCcCeEEEEEECCchHHH---------------HH---HH---
Confidence 9998 46789999999999975 47899999999988766666665 6430 00 00
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHH--hcCCCCcE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPV 360 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~--~~~~~gP~ 360 (603)
+..... +. +...+-.+++..++++||++++ .|| +.+++.+++++++ +. +||+
T Consensus 485 ---------~~~~~~--~~----------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~~~--~gP~ 538 (603)
T 4feg_A 485 ---------EDTNQN--DF----------IGVEFNDIDFSKIADGVHMQAF-RVN--KIEQLPDVFEQAKAIAQ--HEPV 538 (603)
T ss_dssp ---------HHHCSS--CC----------CSSBCCCCCHHHHHHHTTCEEE-EEC--BGGGHHHHHHHHHHHTT--TSCE
T ss_pred ---------HHhcCC--Cc----------ccCcCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHhcC--CCcE
Confidence 000000 00 0000113467889999999999 676 7889999999998 65 8999
Q ss_pred EEEEEeecCCCCCc
Q 007443 361 LVHVVTEENRRAED 374 (603)
Q Consensus 361 lI~v~T~kG~G~~~ 374 (603)
+||+.|.+++.+++
T Consensus 539 lIev~~~~~~~~~~ 552 (603)
T 4feg_A 539 LIDAVITGDRPLPA 552 (603)
T ss_dssp EEEEECCCCCCCCT
T ss_pred EEEEEeCCCCCCCc
Confidence 99999977766654
No 31
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.51 E-value=4.1e-14 Score=158.60 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=119.4
Q ss_pred cchHHHHHHHHhhccCCCceeeecCCc-hHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~GH-~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....++..|...++ +.+.++.|+|+ +.|++.++..+. ..+.+...+.|++|.++|+|+|
T Consensus 370 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~------------------~~~~~~~~g~g~~G~~l~~AiG 430 (563)
T 2uz1_A 370 LHPFHASQVIAKHVD-AGVTVVADGALTYLWLSEVMSRVK------------------PGGFLCHGYLGSMGVGFGTALG 430 (563)
T ss_dssp CCHHHHHHHHHTTCS-TTEEEEECSSHHHHHHHHHHTTSC------------------CSEEECCCTTCCTTTHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCcEEEEcCchHHHHHHHhccccC------------------CCeEECCCCCccccChHHHHHH
Confidence 555566666666552 34566689996 457886665211 0112223457999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
+|+|.+ +++++|||++|||+++. .+++|++|.+++.| ++||+|||++++. ..+++.
T Consensus 431 aa~a~~--~~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~---------------~~~~~~---- 487 (563)
T 2uz1_A 431 AQVADL--EAGRRTILVTGDGSVGY--SIGEFDTLVRKQLPLIVIIMNNQSWGAT---------------LHFQQL---- 487 (563)
T ss_dssp HHHHHH--HHTCEEEEEEEHHHHGG--GTTHHHHHHHHTCCCEEEEEECSBCHHH---------------HHHHHH----
T ss_pred HHHHhh--CCCCeEEEEEccHHHhC--CHHHHHHHHHhCCCeEEEEEeCCcchHH---------------HHHHHH----
Confidence 999975 56789999999999985 46899999999966 5566666677641 000000
Q ss_pred hHHHHHHHHhhhhhcccc-chhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEE
Q 007443 283 SFRQLREVAKGMTKRIGR-GMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~l 361 (603)
. .+. .. ....+-.+++..++++||++++ .|+ +.+++.++++++.+. +||++
T Consensus 488 -----------~---~~~~~~---------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~--~gp~l 539 (563)
T 2uz1_A 488 -----------A---VGPNRV---------TGTRLENGSYHGVAAAFGADGY-HVD--SVESFSAALAQALAH--NRPAC 539 (563)
T ss_dssp -----------H---TCTTCC---------CSCBCCCCCHHHHHHHTTCEEE-EEC--SHHHHHHHHHHHHHS--SSCEE
T ss_pred -----------h---cCCCcc---------cCCcCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHHC--CCCEE
Confidence 0 000 00 0000112467889999999999 665 799999999999886 89999
Q ss_pred EEEEeec
Q 007443 362 VHVVTEE 368 (603)
Q Consensus 362 I~v~T~k 368 (603)
||+.|.+
T Consensus 540 iev~~~~ 546 (563)
T 2uz1_A 540 INVAVAL 546 (563)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999984
No 32
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.48 E-value=2.6e-13 Score=152.29 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=117.2
Q ss_pred cchHHHHHHHHhhccCCCceeeecCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....++.+|...++ +.+.++.|.| |+.|...++..+ + + .+.+...+.|++|.++|+|+|
T Consensus 371 l~~~~v~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~--------~-------~---~~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIVN-SDVTLTVDMGSFHIWIARYLYTF--------R-------A---RQVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHCC-TTEEEEECSSHHHHHHHHTGGGC--------C-------C---SEEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHHHhcccC--------C-------C---CeEEeCCCcccccchHHHHHH
Confidence 556666666666652 3455667999 555666443211 0 0 111222457999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEE-EEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI-VILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli-vIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~ 282 (603)
+|+|. ++++|||++|||+++ +.+++|++|..++.|++ ||+|||++++. +.+++..
T Consensus 432 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~---------------~~~~~~~--- 487 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGYNMV---------------AIQEEKK--- 487 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBCHHH---------------HHHHHHH---
T ss_pred HHHhC----CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCchhHH---------------HHHHHHh---
Confidence 99993 578999999999997 45789999999997755 45555566541 0110000
Q ss_pred hHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 007443 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (603)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~lI 362 (603)
.++. +....-.+++..++++||++++ .|+ +.+++.++++++.+. +||++|
T Consensus 488 ---------------~~~~----------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~li 537 (566)
T 1ozh_A 488 ---------------YQRL----------SGVEFGPMDFKAYAESFGAKGF-AVE--SAEALEPTLRAAMDV--DGPAVV 537 (566)
T ss_dssp ---------------HSSC----------CSCBCCCCCHHHHHHTTTSEEE-ECC--SGGGHHHHHHHHHHS--SSCEEE
T ss_pred ---------------cCCC----------ccCcCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEE
Confidence 0000 0001113467889999999999 676 789999999999876 899999
Q ss_pred EEEeecCCC
Q 007443 363 HVVTEENRR 371 (603)
Q Consensus 363 ~v~T~kG~G 371 (603)
|++|.+...
T Consensus 538 ev~~~~~~~ 546 (566)
T 1ozh_A 538 AIPVDYRDN 546 (566)
T ss_dssp EEEBCCTTH
T ss_pred EEEeCCCcC
Confidence 999987653
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.47 E-value=1.7e-13 Score=154.54 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=98.1
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCE-EEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNM-IVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nl-ivIlndN~~si~~t~~~g~s~~ 267 (603)
.+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|++++.|+ +||+|||++++.
T Consensus 423 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~---------- 486 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGMV---------- 486 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBCHHH----------
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcchHH----------
Confidence 35699999999999999993 578999999999998 4578999999999775 555566677651
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhh-hccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMT-KRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
..+++..... ... ..++.+. ....-.+++..++++||++++ .|+ +.+++.+
T Consensus 487 -----~~~~~~~~~~----------~~~~~~~~~p~----------~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 538 (590)
T 1ybh_A 487 -----MQWEDRFYKA----------NRAHTFLGDPA----------QEDEIFPNMLLFAAACGIPAA-RVT--KKADLRE 538 (590)
T ss_dssp -----HHHHHHHSTT----------CCCSCBCSCGG----------GTTSCSSCHHHHHHHTTCCEE-EEC--BHHHHHH
T ss_pred -----HHHHHHhcCC----------ccccccccccc----------cccCCCCCHHHHHHHcCCeEE-EeC--CHHHHHH
Confidence 0111000000 000 0000000 000002367889999999999 775 8999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCCCCCc
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENRRAED 374 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~G~~~ 374 (603)
+++++++. +||++||++|.++....+
T Consensus 539 al~~a~~~--~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 539 AIQTMLDT--PGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHHHHS--SSCEEEEEECCTTCCCCS
T ss_pred HHHHHHhC--CCCEEEEEEecCCcccCC
Confidence 99999886 899999999999886543
No 34
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.44 E-value=5.1e-13 Score=152.88 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=118.3
Q ss_pred ccchHHHHHHHHhhccC-CCceeee-cCC-chHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHH
Q 007443 124 SLAAVELTVALHHVFHA-PVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200 (603)
Q Consensus 124 slg~~el~~aL~~vf~~-p~D~ii~-d~G-H~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~ 200 (603)
.+....+...|...+.. |.|.||. |+| |+.|...++. ++ .+ .+.....+.|++|.++|+
T Consensus 460 ~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~--------~~---------~p-~~~~~sg~~G~mG~~lpa 521 (677)
T 1t9b_A 460 KIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWT--------WR---------NP-HTFITSGGLGTMGYGLPA 521 (677)
T ss_dssp CBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSC--------CC---------ST-TCEECCCSSCCTTCHHHH
T ss_pred CcCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcc--------cC---------CC-CeEEeCCCcchhhchHHH
Confidence 35555565566555533 5666653 667 4445443322 00 00 011122356899999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccchhhhhhhhhhh
Q 007443 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQ 279 (603)
Q Consensus 201 A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~ 279 (603)
|+|+|+| .++++|||++|||+++ +.+++|++|..++.| ++||+|||++++ .+.+++..
T Consensus 522 AiGaalA----~p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~g~---------------~~~~~~~~ 580 (677)
T 1t9b_A 522 AIGAQVA----KPESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQGM---------------VTQWQSLF 580 (677)
T ss_dssp HHHHHHH----CTTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSCHH---------------HHHHHHHH
T ss_pred HHHHHHh----CCCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCchh---------------hhhhhhhh
Confidence 9999999 4688999999999997 567889999999966 566666666754 11111000
Q ss_pred hhhhHHHHHHHHhhhhhccccchhHHHHhHHHhh-hccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCC
Q 007443 280 SSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA-RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMG 358 (603)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~g 358 (603)
.+.. +. ..+-.+++..++++||++++ .|+ +.++|.++|+++.+. +|
T Consensus 581 ------------------~~~~----------~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al~~a~~~--~g 627 (677)
T 1t9b_A 581 ------------------YEHR----------YSHTHQLNPDFIKLAEAMGLKGL-RVK--KQEELDAKLKEFVST--KG 627 (677)
T ss_dssp ------------------STTC----------CCSCCCCCCCHHHHHHHTTCEEE-EEC--SHHHHHHHHHHHHHC--SS
T ss_pred ------------------cCCC----------cccCcCCCCCHHHHHHHcCCeEE-EEC--CHHHHHHHHHHHHHC--CC
Confidence 0000 00 00113467899999999999 664 899999999999886 89
Q ss_pred cEEEEEEeecCCCCCc
Q 007443 359 PVLVHVVTEENRRAED 374 (603)
Q Consensus 359 P~lI~v~T~kG~G~~~ 374 (603)
|+|||+.|.++....+
T Consensus 628 p~lIev~~~~~~~~~p 643 (677)
T 1t9b_A 628 PVLLEVEVDKKVPVLP 643 (677)
T ss_dssp CEEEEEEBCSSCCCSS
T ss_pred cEEEEEEecCCcccCC
Confidence 9999999999876443
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.43 E-value=1.5e-12 Score=145.49 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=93.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|++|.++++|+|+++| .++++|||++|||+++ +.+++|++|.+++.| ++||+|||++.+.. .
T Consensus 404 ~~g~mG~~l~~AiGaala----~~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~----~----- 468 (549)
T 3eya_A 404 NHGSMANAMPQALGAQAT----EPERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVA----M----- 468 (549)
T ss_dssp TTCCTTCHHHHHHHHHHH----STTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHh----CCCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHH----H-----
Confidence 568999999999999999 4578999999999996 557899999999966 56666676676410 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+....+ ......+-.+++..++++||++++ .| ++.+++.+++
T Consensus 469 ---------~~~~~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al 511 (549)
T 3eya_A 469 ---------EMKAGGY-------------------------LTDGTELHDTNFARIAEACGITGI-RV--EKASEVDEAL 511 (549)
T ss_dssp --------------------------------------------CCBCCCCCHHHHHHHTTSEEE-EE--CSGGGHHHHH
T ss_pred ---------HHHhcCC-------------------------CCcCCcCCCCCHHHHHHHcCCcEE-Ee--CCHHHHHHHH
Confidence 0000000 000011123467889999999999 66 4889999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~G 371 (603)
+++++. +||++||+.|.+..-
T Consensus 512 ~~a~~~--~gp~liev~~~~~~~ 532 (549)
T 3eya_A 512 QRAFSI--DGPVLVDVVVAKEEL 532 (549)
T ss_dssp HHHHHS--SSCEEEEEEBCCCCS
T ss_pred HHHHhC--CCCEEEEEEeccccc
Confidence 999886 899999999987654
No 36
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.40 E-value=1.1e-12 Score=147.93 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=97.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|++|.++|+|+|+|+| .++++|||++|||+++. .+|+|++|.+++.| ++||+|||++++.
T Consensus 422 g~g~mG~~l~~AiGaala----~~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~----------- 484 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLA----EPNSRVFLGTGDGALYY--HFNEFRVAVEHKLPVITMVFTNESYGAN----------- 484 (589)
T ss_dssp TTCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHHH-----------
T ss_pred CcchhhhHHHHHHHHHHh----CCCCcEEEEEeeHHHHh--hHHHHHHHHHhCCCeEEEEEECCCcccc-----------
Confidence 569999999999999999 35789999999999974 57999999999966 5555566667541
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
..+++. . .+.. +...+-.+++..++++||++++ .|+ +.+++.+++
T Consensus 485 ----~~~~~~----~--------------~~~~----------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 529 (589)
T 2pgn_A 485 ----WTLMNH----Q--------------FGQN----------NWTEFMNPDWVGIAKAFGAYGE-SVR--ETGDIAGAL 529 (589)
T ss_dssp ----HHHHHH----H--------------HSSC----------CSCBCCCCCHHHHHHHHTCEEE-ECT--TTCCHHHHH
T ss_pred ----hHHHHh----h--------------cCCC----------ccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 000000 0 0000 0001113567899999999999 676 678899999
Q ss_pred HHHHhcCCCCcEEEEEEeecCCCCCcc
Q 007443 349 QEVASLGSMGPVLVHVVTEENRRAEDT 375 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~G~~~a 375 (603)
+++.+. +||++||+.|.++.+..+.
T Consensus 530 ~~a~~~--~gp~liev~~~~~~~~~~~ 554 (589)
T 2pgn_A 530 QRAIDS--GKPALIEIPVSKTQGLASD 554 (589)
T ss_dssp HHHHHH--CSCEEEEEECCSSSSTTTC
T ss_pred HHHHhC--CCCEEEEEEecCCCCcCcc
Confidence 998876 8999999999998877653
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.40 E-value=6.4e-13 Score=149.25 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=93.9
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|++|.++|+|+|+|+|. ++++|||++|||+++. .+++|++|++++.| ++||+|||++++.
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~--~~~~L~~a~~~~l~~~ivv~NN~~~~~~----------- 496 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHS--NSSDLETIARLNLPIVTVVVNNDTNGLI----------- 496 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHH--TGGGHHHHHHHTCCCEEEEEECSBCHHH-----------
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHh--HHHHHHHHHHhCCCeEEEEEECCcchhh-----------
Confidence 5799999999999999993 5789999999999985 47899999999966 5666677667651
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+.+++.. .+.... +. ..+-.+++..++++||++++ .|+ +.+++.+++
T Consensus 497 ----~~~~~~~------------------~~~~~~----~~----~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 543 (573)
T 2iht_A 497 ----ELYQNIG------------------HHRSHD----PA----VKFGGVDFVALAEANGVDAT-RAT--NREELLAAL 543 (573)
T ss_dssp ----HHHHHHH------------------HSSCCG----GG----TBCCCCCHHHHHHHTTCEEE-ECC--SHHHHHHHH
T ss_pred ----HHHHHHh------------------cCCCcC----cc----ccCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 0110000 000000 00 01113467899999999999 665 899999999
Q ss_pred HHHHhcCCCCcEEEEEEeec
Q 007443 349 QEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~k 368 (603)
+++++. +||++||++|.|
T Consensus 544 ~~a~~~--~gp~liev~~~~ 561 (573)
T 2iht_A 544 RKGAEL--GRPFLIEVPVNY 561 (573)
T ss_dssp HHHHTS--SSCEEEEEEBCC
T ss_pred HHHHhC--CCCEEEEEECCC
Confidence 999875 899999999987
No 38
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.39 E-value=8.4e-13 Score=146.74 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=90.9
Q ss_pred CchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEE-ECCCCCcCCCccCCCcccchh
Q 007443 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVIL-NDSRHSLHPKIEESPKTSINA 270 (603)
Q Consensus 192 G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIl-ndN~~si~~t~~~g~s~~vg~ 270 (603)
|++|.++|+|+|+|+|. ++++|||++|||+++.+ +|+|++|.+++.|+++|| |||++++.
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~------------- 461 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGAL------------- 461 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHH-------------
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHh-------------
Confidence 99999999999999993 57889999999999855 799999999997755555 55567541
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHH
Q 007443 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (603)
Q Consensus 271 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~ 350 (603)
+.+++... .+... ...+-..++..++++||++++ .|| +.+++.+++++
T Consensus 462 --~~~~~~~~--------------~~~~~-------------~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~ 509 (528)
T 1q6z_A 462 --RWFAGVLE--------------AENVP-------------GLDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSLQE 509 (528)
T ss_dssp --HHHHHHHT--------------CCSCC-------------SCBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHHHH
T ss_pred --HHHHHHhc--------------CCCcc-------------cCCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHH
Confidence 00100000 00000 000113467889999999999 787 67899999999
Q ss_pred HHhcCCCCcEEEEEEeec
Q 007443 351 VASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 351 a~~~~~~gP~lI~v~T~k 368 (603)
+++. +||++||++|.+
T Consensus 510 a~~~--~gp~liev~~~~ 525 (528)
T 1q6z_A 510 ALSA--KGPVLIEVSTVS 525 (528)
T ss_dssp HHTC--SSCEEEEEEBCC
T ss_pred HHHC--CCcEEEEEEecC
Confidence 9876 899999999975
No 39
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.39 E-value=1.2e-12 Score=148.23 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=94.8
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCE-EEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNM-IVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nl-ivIlndN~~si~~t~~~g~s~~ 267 (603)
.+.|++|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|+.++.|+ +||+|||++++.
T Consensus 439 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~---------- 502 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQF--LIEELAVGAQFNIPYIHVLVNNAYLGLI---------- 502 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCHHH----------
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhC--CHHHHHHHHHhCCCeEEEEEECCcchHH----------
Confidence 35699999999999999993 5789999999999984 578999999999665 566666667641
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
+.+++..... .+ . ..... .+..........++..++++||++++ .|+ +.++|.++
T Consensus 503 -----~~~~~~~~~~----~~-------~--~~~~~----~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 557 (616)
T 2pan_A 503 -----RQSQRAFDMD----YC-------V--QLAFE----NINSSEVNGYGVDHVKVAEGLGCKAI-RVF--KPEDIAPA 557 (616)
T ss_dssp -----HHHGGGGTCC----CS-------C--BCCCC----CTTCGGGTTCCCCHHHHHHHTTCEEE-EEC--SGGGHHHH
T ss_pred -----HHHHHHhcCC----cc-------c--ccccc----ccccccCCCCCCCHHHHHHHcCCeEE-EEC--CHHHHHHH
Confidence 0010000000 00 0 00000 00000000002466889999999999 675 78999999
Q ss_pred HHHHHh----cCCCCcEEEEEEeecCCC
Q 007443 348 LQEVAS----LGSMGPVLVHVVTEENRR 371 (603)
Q Consensus 348 l~~a~~----~~~~gP~lI~v~T~kG~G 371 (603)
++++.+ . +||++||++|.|+.-
T Consensus 558 l~~a~~~~~~~--~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 558 FEQAKALMAQY--RVPVVVEVILERVTN 583 (616)
T ss_dssp HHHHHHHHHHH--CSCEEEEEEBCSCCC
T ss_pred HHHHHhhcccC--CCcEEEEEEeccccc
Confidence 999876 5 799999999998873
No 40
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.35 E-value=1.4e-12 Score=146.01 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~ 267 (603)
.+.|.+|.++|+|+|+|+|.+.++++++|||++|||+++ +.+++|++|..++.| ++||+|||++++. ..
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~--------~~ 479 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGYTIQ--------KL 479 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHH--------HH
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcchhh--------hh
Confidence 457899999999999999988778889999999999997 568999999999966 5555577677641 00
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe---EEeecCCCCHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY---YIGPVDGHNIEDL 344 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~---~ig~vDGhD~~~l 344 (603)
+ .+... .+ ..+-.+++..++++||++ ++ .|| +.+++
T Consensus 480 -------~----------------------~~~~~--------~~-~~~~~~d~~~~a~a~G~~~~~~~-~v~--~~~el 518 (563)
T 2vk8_A 480 -------I----------------------HGPKA--------QY-NEIQGWDHLSLLPTFGAKDYETH-RVA--TTGEW 518 (563)
T ss_dssp -------H----------------------SCTTC--------GG-GCCCCCCGGGHHHHTTCSSEEEE-EEC--BHHHH
T ss_pred -------h----------------------hCCCC--------Cc-ccCCCCCHHHHHHHhCCCCCcEE-Eec--CHHHH
Confidence 0 00000 00 011134678899999999 77 676 79999
Q ss_pred HHHHH-HHHhcCCCCcEEEEEEeecC
Q 007443 345 ISVLQ-EVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 345 ~~al~-~a~~~~~~gP~lI~v~T~kG 369 (603)
.++++ ++.+. .++|++||++|.+.
T Consensus 519 ~~al~~~a~~~-~~~p~liev~~~~~ 543 (563)
T 2vk8_A 519 DKLTQDKSFND-NSKIRMIEVMLPVF 543 (563)
T ss_dssp HHHHTCTTTTS-CSSEEEEEEECCTT
T ss_pred HHHHHHHHHhC-CCCcEEEEEEeCcc
Confidence 99998 77654 24799999999754
No 41
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.34 E-value=2.2e-12 Score=144.08 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=93.2
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~ 267 (603)
.+.|++|.++|+|+|+|+| .++++|||++|||+++ +.+++|.+|.+++.| ++||+|||++++. ..
T Consensus 405 ~~~g~mG~~l~~A~G~a~a----~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~--------~~ 470 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTA----CPNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVE--------RA 470 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHH----CTTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHH--------HH
T ss_pred hhhHhhhhHHHHHHHHHHh----CCCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEE--------Ee
Confidence 3579999999999999999 3578999999999997 678999999999966 6666677777651 00
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCC----eEEeecCCCCHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL----YYIGPVDGHNIED 343 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~----~~ig~vDGhD~~~ 343 (603)
+ .+... .+ ..+-.+++..++++||+ +++ .|+ +.++
T Consensus 471 -------~----------------------~~~~~--------~~-~~~~~~d~~~~a~a~G~~~~~~~~-~v~--~~~~ 509 (552)
T 1ovm_A 471 -------I----------------------HGAEQ--------RY-NDIALWNWTHIPQALSLDPQSECW-RVS--EAEQ 509 (552)
T ss_dssp -------H----------------------SCTTC--------GG-GCCCCCCGGGSTTTSCSSCCEEEE-EEC--BHHH
T ss_pred -------e----------------------ccCCC--------Cc-ccCCCCCHHHHHHHhCCCcCCCEE-EeC--CHHH
Confidence 0 00000 00 01113466788999999 888 666 7999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEeecC
Q 007443 344 LISVLQEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 344 l~~al~~a~~~~~~gP~lI~v~T~kG 369 (603)
+.++++++++. +||++||++|.+.
T Consensus 510 l~~al~~a~~~--~gp~liev~~~~~ 533 (552)
T 1ovm_A 510 LADVLEKVAHH--ERLSLIEVMLPKA 533 (552)
T ss_dssp HHHHHHHHTTC--SSEEEEEEECCTT
T ss_pred HHHHHHHHHhC--CCCEEEEEEcCcc
Confidence 99999998775 8999999999864
No 42
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.34 E-value=3e-12 Score=144.28 Aligned_cols=130 Identities=14% Similarity=0.157 Sum_probs=94.2
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCccc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTS 267 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~ 267 (603)
.+.|.+|.++++|+|+|+| .++++|||++|||+++. .+++|++|.+++.| ++||+|||++++.. .
T Consensus 410 ~~~g~mG~~l~~AiGaala----~~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~--------~ 475 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNT----YPDRQVWNIIGDGAFSM--TYPDVVTNVRYNMPVINVVFSNTEYAFIK--------N 475 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCTTGG--------G
T ss_pred CCCCcccChHHHHHHHHHh----CCCCeEEEEEechHHhc--hHHHHHHHHHhCCCCEEEEEECCchHHHH--------H
Confidence 3579999999999999999 35789999999999984 47999999999966 55666777777520 0
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHH
Q 007443 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (603)
Q Consensus 268 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~a 347 (603)
. +....| +..+ ..+-.+++..++++||++++ .|+ +.+++.++
T Consensus 476 ~----------q~~~~~-----------~~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~a 517 (590)
T 1v5e_A 476 K----------YEDTNK-----------NLFG--------------VDFTDVDYAKIAEAQGAKGF-TVS--RIEDMDRV 517 (590)
T ss_dssp T----------TSSSCC-----------SCCC--------------CCCCCCCHHHHHHHTTSEEE-EEC--BHHHHHHH
T ss_pred H----------HHHhcC-----------CCcc--------------ccCCCCCHHHHHHHcCCEEE-EEC--CHHHHHHH
Confidence 0 000000 0000 00112466889999999999 676 78999999
Q ss_pred HHHHHhcC-CCCcEEEEEEeecCC
Q 007443 348 LQEVASLG-SMGPVLVHVVTEENR 370 (603)
Q Consensus 348 l~~a~~~~-~~gP~lI~v~T~kG~ 370 (603)
++++.+.. .+||++||++|.++.
T Consensus 518 l~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 518 MAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHHhcCCCCCEEEEEEecccc
Confidence 99886531 168999999999876
No 43
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.30 E-value=7.6e-12 Score=140.22 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=94.0
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|++|.++|+|+|+|+| .++++|||++|||+++ +.+++|++|++++.| ++||+|||++++..
T Consensus 407 ~~g~mG~~l~~A~G~ala----~~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~---------- 470 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMG----SQDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVIEI---------- 470 (566)
T ss_dssp TTCCTTTHHHHHHHHHHT----CTTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHH----------
T ss_pred cccchhhHHHHHHHHHHh----CCCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceEEE----------
Confidence 578899999999999998 3578999999999997 567899999999966 66777777776510
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCC-----eEEeecCCCCHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL-----YYIGPVDGHNIED 343 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~-----~~ig~vDGhD~~~ 343 (603)
. + + ...| ...-..++..++++||+ +++ .|+ +.++
T Consensus 471 -~----~---~-~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~-~v~--~~~e 509 (566)
T 2vbi_A 471 -A----I---H-DGPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGL-KAT--TPKE 509 (566)
T ss_dssp -T----T---S-CCGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEE-EEC--SHHH
T ss_pred -e----e---c-cCCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEE-EeC--CHHH
Confidence 0 0 0 0000 00112356789999999 999 676 7999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEeecCC
Q 007443 344 LISVLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 344 l~~al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+.++++++.+.. +||++||++|.|..
T Consensus 510 l~~al~~a~~~~-~gp~liev~~~~~~ 535 (566)
T 2vbi_A 510 LTEAIARAKANT-RGPTLIECQIDRTD 535 (566)
T ss_dssp HHHHHHHHHHCC-SSCEEEEEECCTTC
T ss_pred HHHHHHHHHhcC-CCcEEEEEEeCccc
Confidence 999999998742 68999999998765
No 44
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.29 E-value=8.7e-12 Score=139.88 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=91.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|.+|.++|+|+|+|+| .++++|||++|||+++ +.+++|++|.+++.| ++||+|||++++. .
T Consensus 423 ~~g~mG~~l~~A~Gaala----~~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~--------~-- 486 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIA----DKESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGYTVE--------R-- 486 (570)
T ss_dssp TTCCTTTHHHHHHHHHHH----CTTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHH--------H--
T ss_pred cchhhhhhHHHHHHHHHh----CCCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCchHHH--------H--
Confidence 578999999999999999 3578999999999997 567899999999966 5666677777641 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCe-----EEeecCCCCHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-----YIGPVDGHNIED 343 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~-----~ig~vDGhD~~~ 343 (603)
.+ + +.. ..+ ..+-.+++..++++||++ ++ .|+ +.++
T Consensus 487 -----~~---~-------------------~~~--------~~~-~~~~~~d~~~~a~a~G~~~~~~~~~-~v~--~~~e 527 (570)
T 2vbf_A 487 -----EI---H-------------------GPT--------QSY-NDIPMWNYSKLPETFGATEDRVVSK-IVR--TENE 527 (570)
T ss_dssp -----HH---S-------------------CTT--------CGG-GCCCCCCGGGHHHHTTCCTTTEEEE-EEC--BHHH
T ss_pred -----HH---h-------------------ccC--------CCc-cCCCCCCHHHHHHHcCCCcCCcceE-Eec--CHHH
Confidence 00 0 000 000 011134678899999998 67 565 7999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEEEeecCC
Q 007443 344 LISVLQEV-ASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 344 l~~al~~a-~~~~~~gP~lI~v~T~kG~ 370 (603)
+.++++++ .+. +||++||+.|.+..
T Consensus 528 l~~al~~a~~~~--~~p~liev~~~~~~ 553 (570)
T 2vbf_A 528 FVSVMKEAQADV--NRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHHCT--TSEEEEEEECCTTC
T ss_pred HHHHHHHHHhcC--CCcEEEEEEcCccc
Confidence 99999984 554 79999999998643
No 45
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.26 E-value=1.6e-11 Score=137.77 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=93.5
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|++|.++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.+++.| ++||+|||++++..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~---------- 474 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTIEV---------- 474 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHH----------
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcceEee----------
Confidence 5788999999999999993 578999999999997 568899999999966 56666777776510
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCC---------eEEeecCCC
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL---------YYIGPVDGH 339 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~---------~~ig~vDGh 339 (603)
.+ + ...| ...-..++..++++||+ +++ .|+
T Consensus 475 -----~~---~-~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~~~~-~v~-- 513 (568)
T 2wvg_A 475 -----MI---H-DGPY-----------------------------NNIKNWDYAGLMEVFNGNGGYDSGAGKGL-KAK-- 513 (568)
T ss_dssp -----TT---S-CCGG-----------------------------GCCCCCCHHHHHHHHHCTTSSSCCCCEEE-EES--
T ss_pred -----ee---c-cCCC-----------------------------cCCCCCCHHHHHHHhCCCcccccCCcceE-EeC--
Confidence 00 0 0000 00112356788999999 888 675
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEEEeecCC
Q 007443 340 NIEDLISVLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 340 D~~~l~~al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+.+++.++++++.+. .+||++||++|.++.
T Consensus 514 ~~~el~~al~~a~~~-~~gp~liev~~~~~~ 543 (568)
T 2wvg_A 514 TGGELAEAIKVALAN-TDGPTLIECFIGRED 543 (568)
T ss_dssp BHHHHHHHHHHHHHC-CSSCEEEEEECCTTC
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEEEcCccc
Confidence 799999999999874 268999999998764
No 46
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.24 E-value=1.2e-10 Score=130.47 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=111.5
Q ss_pred cchHHHHHHHHhhccCCCceeee-cCCchHHHHHHHhcchhHhhHhhhcCCCCCCCCCCCCCCCCcCcCchhhhHHHHHH
Q 007443 125 LAAVELTVALHHVFHAPVDKILW-DVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (603)
Q Consensus 125 lg~~el~~aL~~vf~~p~D~ii~-d~GH~aY~~~~LtGr~~~~~~~R~~ggl~g~~~~~es~~d~~~~G~~G~~is~A~G 203 (603)
+....+...|...++.|.|.++. +.||+.+....+. .++ .|.. .......|++|+++++|+|
T Consensus 370 ~~~~~~~~~l~~~l~~~~d~ivv~dg~~~~~~~~~~~-------~~~-------~p~~---~~~~g~~g~~G~~l~~AiG 432 (564)
T 2q28_A 370 LNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNII-------DMY-------KPRR---RLDCGTWGVMGIGMGYAIG 432 (564)
T ss_dssp BCHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHS-------CCC-------SSSC---EEESTTTTCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHHHh-------ccc-------CCCe---EecCCCCCcccchHHHHHH
Confidence 55555665565555336666665 5566654322111 000 0110 1112356899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-C-CcCCCccCCCcccchhhhhhhhhhhhh
Q 007443 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-H-SLHPKIEESPKTSINALSSTLSRIQSS 281 (603)
Q Consensus 204 ~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~-si~~t~~~g~s~~vg~ls~~l~~~~~~ 281 (603)
+++| ++++|||++|||+++ +.+++|.+|.+++.|+++||.||+ + ++.+. +. .+
T Consensus 433 aa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~-----~~-~~------------ 487 (564)
T 2q28_A 433 ASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGV-----DL-SG------------ 487 (564)
T ss_dssp HHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCC-----CT-TS------------
T ss_pred Hhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHH-----HH-hc------------
Confidence 9998 477899999999996 567889999999977666655554 3 43110 00 00
Q ss_pred hhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccC-CCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcCCCCcE
Q 007443 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI-GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (603)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~~~gP~ 360 (603)
+.... .. .+. .+++..++++||++++ .|+ +.+++.++++++.+. ++|+
T Consensus 488 -----------------~~~~~----~~-----~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~ 536 (564)
T 2q28_A 488 -----------------AGAPS----PT-----DLLHHARYDKLMDAFRGVGY-NVT--TTDELRHALTTGIQS--RKPT 536 (564)
T ss_dssp -----------------SCCCC----TT-----BCCTTCCGGGGGGGGTCEEE-EEC--SHHHHHHHHHHHHHH--TSCE
T ss_pred -----------------cCCcc----cc-----ccCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCE
Confidence 00000 00 000 2366889999999999 665 799999999999876 8999
Q ss_pred EEEEEeecCC
Q 007443 361 LVHVVTEENR 370 (603)
Q Consensus 361 lI~v~T~kG~ 370 (603)
+||+.|.+..
T Consensus 537 liev~~~~~~ 546 (564)
T 2q28_A 537 IINVVIDPAA 546 (564)
T ss_dssp EEEEEBCTTS
T ss_pred EEEEEecccc
Confidence 9999998754
No 47
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.22 E-value=1.1e-11 Score=138.95 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=93.6
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~n-livIlndN~~si~~t~~~g~s~~v 268 (603)
+.|.+|.++++|+|+|+|. ++++|||++|||+++ +.+++|.+|.+++.| ++||+|||++++.+
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~---------- 483 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR---------- 483 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHH----------
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEe----------
Confidence 4688999999999999994 578899999999998 889999999999966 66666777776410
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
..+....| ..+-.+++..++++||++++ .|+ +.+++.+++
T Consensus 484 --------~~~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 523 (565)
T 2nxw_A 484 --------TFQPESAF-----------------------------NDLDDWRFADMAAGMGGDGV-RVR--TRAELKAAL 523 (565)
T ss_dssp --------HHCTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEE-EEC--BHHHHHHHH
T ss_pred --------eecccCCC-----------------------------CcCCCCCHHHHHHHcCCCEE-EeC--CHHHHHHHH
Confidence 00000000 01113466889999999999 676 789999999
Q ss_pred HHHHhcCCCCcE-EEEEEeecC
Q 007443 349 QEVASLGSMGPV-LVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~-lI~v~T~kG 369 (603)
+++.+. +||+ +||++|.+.
T Consensus 524 ~~a~~~--~gp~~liev~~~~~ 543 (565)
T 2nxw_A 524 DKAFAT--RGRFQLIEAMIPRG 543 (565)
T ss_dssp HHHHHC--CSSCEEEEEECCTT
T ss_pred HHHHhc--CCCeEEEEEEcccc
Confidence 999876 7898 999999754
No 48
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.21 E-value=7.6e-11 Score=132.16 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=92.6
Q ss_pred cCcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-C-CcCCCccCCCcc
Q 007443 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-H-SLHPKIEESPKT 266 (603)
Q Consensus 189 ~~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~-si~~t~~~g~s~ 266 (603)
.+.|++|.++++|+|+|+| ++++|||++|||+++ +.+++|++|.+++.|+++||.||+ + ++.+. +.
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~-----~~ 490 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEA-----DP 490 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCC-----CS
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHH-----Hh
Confidence 3568899999999999998 467899999999997 668999999999988666666665 3 33110 00
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHH
Q 007443 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (603)
Q Consensus 267 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~ 346 (603)
.+ ... .. .. .-.+++..++++||++++ .|+ +.+++.+
T Consensus 491 -~~------------------------------~~~-------~~-~~-~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 527 (568)
T 2c31_A 491 -QP------------------------------GVI-------SC-TR-LTRGRYDMMMEAFGGKGY-VAN--TPAELKA 527 (568)
T ss_dssp -BT------------------------------TBC-------CT-TB-CCCCCHHHHHHTTTCEEE-EES--SHHHHHH
T ss_pred -hc------------------------------CCc-------cc-Cc-CCCCCHHHHHHHcCCeEE-EeC--CHHHHHH
Confidence 00 000 00 00 113466889999999999 675 8999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeecCC
Q 007443 347 VLQEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 347 al~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++++.+. +||++||++|.+..
T Consensus 528 al~~a~~~--~~p~liev~~~~~~ 549 (568)
T 2c31_A 528 ALEEAVAS--GKPCLINAMIDPDA 549 (568)
T ss_dssp HHHHHHHH--TSCEEEEEEBCTTS
T ss_pred HHHHHHhC--CCCEEEEEEecccc
Confidence 99999876 89999999998764
No 49
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.19 E-value=2.8e-11 Score=130.03 Aligned_cols=153 Identities=13% Similarity=0.096 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-hhhhH---hCCCCeeecchhhHHHHHHHHHHhcCCCeEEEEecHH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-QLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA 476 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-~~f~~---~fp~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~ 476 (603)
++-.+|+.+++.. .+.+++..-+-.. ++.+ +.|.+ ++..+|+++. +|+.++++|.|.|+.|.+|++++.++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~ 97 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGP 97 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCch
Confidence 4667788777765 3455666655443 2333 44544 4557889988 99999999999999999999999888
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--C-CCCCCCCChhhHHHHhcCC--CcEEEecCCHHHHHHHHHHHHh---
Q 007443 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLV--G-SDGPTQCGAFDITFMSCLP--NMIVMAPSDEDELVDMVATVAS--- 548 (603)
Q Consensus 477 Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g-~dG~tH~~~~dia~lr~iP--nl~V~~Psd~~e~~~~l~~a~~--- 548 (603)
++.+++|||.+ ++..++|++++....+.. | .....|+...+. ++...| ++.|++|++++|+..++.+|+.
T Consensus 98 G~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~ 175 (395)
T 1yd7_A 98 GFSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSE 175 (395)
T ss_dssp HHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 88899999987 468899999987654432 2 222334456664 445555 9999999999999999999863
Q ss_pred CCCCcEEEEeec
Q 007443 549 IDDRPVCFRYPR 560 (603)
Q Consensus 549 ~~~~P~~ir~~r 560 (603)
+.+.||+++++.
T Consensus 176 ~~~~PVi~~~~~ 187 (395)
T 1yd7_A 176 KYRTPVILLTDA 187 (395)
T ss_dssp HHTSEEEEEECH
T ss_pred HHCCCEEEEcch
Confidence 456899999975
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.13 E-value=3.4e-11 Score=136.07 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=91.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEE-EEEECCCCCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMI-VILNDSRHSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli-vIlndN~~si~~t~~~g~s~~v 268 (603)
+.|.+|.++|+|+|+|+|. +++|||++|||+++. .+++|++|.+++.|++ ||+|||++++. .
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lp~~ivv~NN~~~~i~--------~-- 515 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYH--DLNGLLAAKKLGIPLTVILVNNDGGGIF--------S-- 515 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHH--TGGGGHHHHHHCCCEEEEEEECSSCGGG--------G--
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHh--HHHHHHHhhhcCCCeEEEEEeCCCCccc--------c--
Confidence 3466889999999999993 678999999999975 4678999999997755 55567777651 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
.+...|....|. .+......+++..++++||++++ .|+ +.+++.+++
T Consensus 516 -----~~~~~q~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 562 (604)
T 2x7j_A 516 -----FLPQASEKTHFE-------------------------DLFGTPTGLDFKHAAALYGGTYS-CPA--SWDEFKTAY 562 (604)
T ss_dssp -----GSGGGSCHHHHH-------------------------HHTTCCCCCCTHHHHHHTTCEEE-CCS--SHHHHHHHC
T ss_pred -----cCCCCccchhhH-------------------------hhccCCCCCCHHHHHHHcCCeEE-ecC--CHHHHHHHH
Confidence 010111000010 11111123577899999999999 676 799999999
Q ss_pred HHHHhcCCCCcEEEEEEeecCC
Q 007443 349 QEVASLGSMGPVLVHVVTEENR 370 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG~ 370 (603)
+++.+. +||++||++|.+..
T Consensus 563 ~~a~~~--~gp~liev~~~~~~ 582 (604)
T 2x7j_A 563 APQADK--PGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCCSS--CCEEEEEEECCHHH
T ss_pred HHHHhC--CCCEEEEEECCccc
Confidence 887664 89999999997653
No 51
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.08 E-value=1.1e-10 Score=130.70 Aligned_cols=125 Identities=10% Similarity=0.132 Sum_probs=87.2
Q ss_pred CcCchhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccc
Q 007443 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSI 268 (603)
Q Consensus 190 ~~G~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~v 268 (603)
..|++|. +|+|+|+++| ++++|||++|||+++ +..++|++|.+++.|+++||.||+ +++.
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~----------- 475 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIF----------- 475 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcc-----------
Confidence 4566777 9999999998 267899999999996 667889999999988776666665 4431
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHH
Q 007443 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (603)
Q Consensus 269 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al 348 (603)
+. +... +.. .+.+....-.+++..++++||++++ .|+ +.+++.+++
T Consensus 476 ~~----~~~~---------~~~------------------~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 521 (556)
T 3hww_A 476 SL----LPTP---------QSE------------------RERFYLMPQNVHFEHAAAMFELKYH-RPQ--NWQELETAF 521 (556)
T ss_dssp --------------------------------------------CCCCCCCCSHHHHHHTTCEEE-CCS--SHHHHHHHH
T ss_pred cC----CCCc---------chh------------------HHHhccCCCCCCHHHHHHHcCCcEE-ecC--CHHHHHHHH
Confidence 00 0000 000 0000000113577899999999999 665 789999999
Q ss_pred HHHHhcCCCCcEEEEEEeecC
Q 007443 349 QEVASLGSMGPVLVHVVTEEN 369 (603)
Q Consensus 349 ~~a~~~~~~gP~lI~v~T~kG 369 (603)
+++++. +||++||+.|.+.
T Consensus 522 ~~a~~~--~gp~liev~~~~~ 540 (556)
T 3hww_A 522 ADAWRT--PTTTVIEMVVNDT 540 (556)
T ss_dssp HHHTTS--SSEEEEEEECCSS
T ss_pred HHHHhC--CCCEEEEEECCcc
Confidence 999876 8999999999653
No 52
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.99 E-value=3e-10 Score=127.62 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC-CCcCCCccCCCcccchhhhhhh
Q 007443 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR-HSLHPKIEESPKTSINALSSTL 275 (603)
Q Consensus 197 ~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~-~si~~t~~~g~s~~vg~ls~~l 275 (603)
++|+|+|+|. .+++|||++|||+++ +.+++|++|.+++.|+++||.||+ +.+. +.+
T Consensus 441 ~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~---------------~~~ 497 (578)
T 3lq1_A 441 VVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIF---------------SFL 497 (578)
T ss_dssp HHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-----------------------
T ss_pred HHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccc---------------ccc
Confidence 6999999863 378899999999997 667899999999988877777665 5431 011
Q ss_pred hhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCCCCHHHHHHHHHHHHhcC
Q 007443 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG 355 (603)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDGhD~~~l~~al~~a~~~~ 355 (603)
...+....|.. .......+++..++++||++++ .|+ +.+++.++|+++.+.
T Consensus 498 ~~~~~~~~~~~-------------------------~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~- 548 (578)
T 3lq1_A 498 PQANEPKYFES-------------------------LFGTSTELDFRFAAAFYDADYH-EAK--SVDELEEAIDKASYH- 548 (578)
T ss_dssp ------------------------------------------CCCTHHHHHHTTCEEE-ECC--SHHHHHHHHHHHTTS-
T ss_pred ccccccchhhh-------------------------hccCCCCCCHHHHHHHcCCceE-ecC--CHHHHHHHHHHHHhC-
Confidence 00000000000 0000013577899999999999 665 899999999999876
Q ss_pred CCCcEEEEEEeecCCC
Q 007443 356 SMGPVLVHVVTEENRR 371 (603)
Q Consensus 356 ~~gP~lI~v~T~kG~G 371 (603)
+||++||+.|.+..-
T Consensus 549 -~gp~liev~~~~~~~ 563 (578)
T 3lq1_A 549 -KGLDIIEVKTNRHEN 563 (578)
T ss_dssp -SSEEEEEEC------
T ss_pred -CCCEEEEEECCcccc
Confidence 899999999976543
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.26 E-value=1.2e-05 Score=97.19 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=87.1
Q ss_pred CCeeecchhhHHHHHHHHHHhcCCCeEEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--C-CCCCCCCChhhH
Q 007443 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--G-SDGPTQCGAFDI 519 (603)
Q Consensus 443 ~R~id~GIaE~~~vg~AaGlA~~G~~P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g-~dG~tH~~~~di 519 (603)
.+++....+|..+++++.|.|..|.++++.+-+.=+..+.+.+.. ++...+|++++....+.. | .-.+.|+ |.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~~-~ag~~~P~Vi~va~R~g~~~glsi~~~hs---d~ 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMYK-ISGELLPGVFHVTARAIAAHALSIFGDHQ---DI 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHH-HHHTTCCCEEEEEECCCCSSSBCCSCCSH---HH
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHHH-HhCCCCCEEEEECCCCccCCCCcCCCchh---hH
Confidence 379999999999999999999999999999855545556688765 355789999987654432 2 1223444 32
Q ss_pred HHHhcCCCcEEEecCCHHHHHHHHHHHH---hCCCCcEEEEeecC
Q 007443 520 TFMSCLPNMIVMAPSDEDELVDMVATVA---SIDDRPVCFRYPRG 561 (603)
Q Consensus 520 a~lr~iPnl~V~~Psd~~e~~~~l~~a~---~~~~~P~~ir~~r~ 561 (603)
+....+|+.|++|++++|+..+...|. ++...||++++..-
T Consensus 130 -~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~ 173 (1231)
T 2c42_A 130 -YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGF 173 (1231)
T ss_dssp -HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETT
T ss_pred -HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 234579999999999999999998873 34678999999763
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.25 E-value=3e-06 Score=102.55 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCeEEEEEcCC-ccccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHh
Q 007443 214 RECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (603)
Q Consensus 214 ~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nlivIlndN~~si~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~ 292 (603)
++.|||+.||| +++ |.+..|.+|...+.|+++||-||+.- +|+|.+......
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~y----g~tg~Q~s~~t~--------------------- 1005 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVY----SNTGGQSSKATP--------------------- 1005 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSB----TTTTCBCCTTSC---------------------
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHH----HhHHhhhccCCC---------------------
Confidence 37899999999 776 55679999999999988888888743 222222211000
Q ss_pred hhhhccccchhHHHHhHHHhhhccCCCChhhHHhhcCCeEEeecCC-CCHHHHHHHHHHHHhcCCCCcEEEEEEeec
Q 007443 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (603)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ig~vDG-hD~~~l~~al~~a~~~~~~gP~lI~v~T~k 368 (603)
.+... +....-+..-.+|+..+++++|+.|+..+.- .|++++.++|++|.+. +||+||++.+..
T Consensus 1006 -----~~~~t-----~~~~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~~--~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1006 -----TGAVA-----KFAAAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF--PGPSLVIAYATC 1070 (1231)
T ss_dssp -----TTCCB-----BTBTTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS--SSCEEEEEECCC
T ss_pred -----CCcee-----eecccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHhc--CCCEEEEEeecC
Confidence 00000 0000000111357788999999999966655 5999999999999987 899999999863
No 55
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=91.32 E-value=0.53 Score=52.48 Aligned_cols=114 Identities=9% Similarity=-0.074 Sum_probs=78.7
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhc
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~ 524 (603)
-....|++++-+|.|.|+. |...+|.. ..+=+..++.-|.. +...+.||+++.......-.+-..+|......+++.
T Consensus 47 i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~-A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~ 125 (590)
T 1v5e_A 47 LQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYD-AAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDH 125 (590)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHH-HHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHT
T ss_pred EeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHH-HHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHh
Confidence 4578999999999999997 44334333 66777777777766 356789999987654442111123666666788888
Q ss_pred CCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCCC
Q 007443 525 LPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGAI 563 (603)
Q Consensus 525 iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~~ 563 (603)
+-.. .+.+.+++++..+++.|+ ...++||+| +|....
T Consensus 126 ~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~ 166 (590)
T 1v5e_A 126 IAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDFA 166 (590)
T ss_dssp TCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTGG
T ss_pred hccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccchh
Confidence 8766 566677777766666554 334599999 998653
No 56
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.13 E-value=2.7 Score=46.49 Aligned_cols=152 Identities=9% Similarity=0.067 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-hhhhHhCCC-CeeecchhhHHHHHHHHHHhcC-CCeEEEE-ecHH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSA 476 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-~~f~~~fp~-R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~ 476 (603)
++..+++.+.|.+.. -+.++.+-.+ ....+ +.|.+ ++ |++ ....|++++-+|.|.|+. |...+|. +..+
T Consensus 11 ~~~a~~l~~~L~~~G--V~~vfg~PG~--~~~~l~~al~~--~~i~~v-~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGp 83 (566)
T 1ozh_A 11 AHGADLVVSQLEAQG--VRQVFGIPGA--KIDKVFDSLLD--SSIRII-PVRHEANAAFMAAAVGRITGKAGVALVTSGP 83 (566)
T ss_dssp SCHHHHHHHHHHHHT--CCEEEEECCT--TTHHHHHHGGG--SSSEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEECSTH
T ss_pred CcHHHHHHHHHHHCC--CCEEEEcCCC--chHHHHHHHHh--CCCcEE-EeCCHHHHHHHHHHHHHHHCCCEEEEEccCh
Confidence 344666766666543 2334444221 11222 34443 32 333 458999999999999995 6443443 3666
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHH----HHhCCCC
Q 007443 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT----VASIDDR 552 (603)
Q Consensus 477 Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~----a~~~~~~ 552 (603)
=+..++.-|.. +...+.||+++.........+-..||......+++.+.-... ...+++++...++. |....+|
T Consensus 84 G~~N~~~~l~~-A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~r~G 161 (566)
T 1ozh_A 84 GCSNLITGMAT-ANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAI-EVTAPDALAEVVSNAFRAAEQGRPG 161 (566)
T ss_dssp HHHTTHHHHHH-HHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEE-ECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHH-HHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEE-EcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 56666777655 356789999987554432111124777777789988876554 44566666555544 4333469
Q ss_pred cEEEEeecC
Q 007443 553 PVCFRYPRG 561 (603)
Q Consensus 553 P~~ir~~r~ 561 (603)
||+|-+|..
T Consensus 162 PV~l~iP~d 170 (566)
T 1ozh_A 162 SAFVSLPQD 170 (566)
T ss_dssp EEEEEEEHH
T ss_pred eEEEEeChh
Confidence 999999886
No 57
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=87.56 E-value=1.9 Score=47.78 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=76.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEE-EecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHHh
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFMS 523 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~-~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~lr 523 (603)
....|++++-+|.|.|+. |...+| .+..+=...++.-|.+ +...+.||+++....... +. +..||......+++
T Consensus 53 ~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~~-A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d~~~~~~ 130 (573)
T 2iht_A 53 LTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIAT-SVLDRSPVIALAAQSESHDIFP-NDTHQCLDSVAIVA 130 (573)
T ss_dssp ECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHH-HHHHTCCEEEEEEESCGGGCCT-TTSTTCCCHHHHHG
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHHH-HHhhCCCEEEEcccCcccccCC-cCccccCCHHHHHH
Confidence 468999999999999986 543333 3466666777777765 356889999987654442 32 13578888889999
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 524 CLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 524 ~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
.+.-.... ..+++++...++.|+ ...+|||+|-+|...
T Consensus 131 ~~~k~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 131 PMSKYAVE-LQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp GGSSEEEE-CCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred hHhhEEEE-cCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 88765544 345655655555543 334589999998754
No 58
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=87.07 E-value=5.4 Score=43.99 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=91.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--h-hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEE-e
Q 007443 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS--L-QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-I 473 (603)
Q Consensus 399 ~~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~--l-~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~ 473 (603)
.+++..+++.+.|.+.. -+.|+.+ + |+.. + +.|.+ .+.+.+=....|++++-+|.|.|+. |...+|. +
T Consensus 19 ~~~~~a~~lv~~L~~~G--V~~vfg~-P---G~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~T 91 (565)
T 2nxw_A 19 SHMKLAEALLRALKDRG--AQAMFGI-P---GDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVT 91 (565)
T ss_dssp CCCBHHHHHHHHHHHTT--CCCEEEC-C---CGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCcCHHHHHHHHHHHcC--CCEEEEC-C---CcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 34677777777776543 2334443 2 2222 2 34443 2444567789999999999999985 6443443 3
Q ss_pred cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCC---hh-hHHHHhcCCCcEEEecCCHH----HHHHHH
Q 007443 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---AF-DITFMSCLPNMIVMAPSDED----ELVDMV 543 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~---~~-dia~lr~iPnl~V~~Psd~~----e~~~~l 543 (603)
..+=...++.-|.. +...+.||+++...... .|.+...|++ .. ...+++.+--..... .+++ .+..++
T Consensus 92 sGpG~~N~~~gv~~-A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v-~~~~~~~~~i~~A~ 169 (565)
T 2nxw_A 92 YGAGAFNMVNAVAG-AYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARL-DDPAKAPAEIARVL 169 (565)
T ss_dssp TTHHHHTTHHHHHH-HHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEEC-CCTTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEe-CCHHHHHHHHHHHH
Confidence 66656677777765 35689999998765443 2333333433 32 467888776554443 3333 345556
Q ss_pred HHHHhCCCCcEEEEeecCC
Q 007443 544 ATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 544 ~~a~~~~~~P~~ir~~r~~ 562 (603)
+.|... .+||+|-+|+..
T Consensus 170 ~~A~~~-~GPV~l~iP~Dv 187 (565)
T 2nxw_A 170 GAARAQ-SRPVYLEIPRNM 187 (565)
T ss_dssp HHHHHH-TCCEEEEEEGGG
T ss_pred HHHHhC-CCCEEEECChhh
Confidence 656443 799999999754
No 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=86.06 E-value=2.6 Score=47.85 Aligned_cols=151 Identities=14% Similarity=0.074 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcchhhhhHhC---CC-CeeecchhhHHHHHHHHHHhcC-CCeEEEE-ec
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF---PE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IP 474 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l~~f~~~f---p~-R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~~ 474 (603)
++..+++.+.|.+. .=+.|+..+ |+..+ .|.+.+ ++ |++ ....|++++-+|.|.|+. |...+|. ++
T Consensus 82 ~~~a~~lv~~L~~~---GV~~vFg~P---G~~~~-pl~dal~~~~~i~~v-~~~hE~~Aa~aAdGyAr~tGkpgvv~~Ts 153 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQ---NVDTVFGYP---GGAIL-PVYDAIHNSDKFNFV-LPKHEQGAGHMAEGYARASGKPGVVLVTS 153 (677)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECC---CGGGH-HHHHHTTTCSSSEEE-CCSSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCHHHHHHHHHHHc---CCCEEEEec---CccHH-HHHHHHHhCCCCeEE-EeCChHHHHHHHHHHHHHHCCCEEEEECC
Confidence 45666666666543 223333322 23222 233322 32 333 568999999999999985 6543443 36
Q ss_pred HHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh----CC
Q 007443 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS----ID 550 (603)
Q Consensus 475 ~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~ 550 (603)
.+=...++.-|.. +...+.||+++.......-.+-..+|......+++.+--+.+.. .+++++...++.|+. ..
T Consensus 154 GpG~~N~~~gia~-A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v-~~~~~i~~~i~~A~~~A~~gr 231 (677)
T 1t9b_A 154 GPGATNVVTPMAD-AFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMV-KSVEELPLRINEAFEIATSGR 231 (677)
T ss_dssp THHHHTTHHHHHH-HHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSS
T ss_pred ChHHHHHHHHHHH-HHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEc-CCHHHHHHHHHHHHHHHhhCC
Confidence 6656677777765 35679999998754433211112466677778888776665444 567777777776654 34
Q ss_pred CCcEEEEeecC
Q 007443 551 DRPVCFRYPRG 561 (603)
Q Consensus 551 ~~P~~ir~~r~ 561 (603)
+|||+|-+|+.
T Consensus 232 pGPV~l~lP~D 242 (677)
T 1t9b_A 232 PGPVLVDLPKD 242 (677)
T ss_dssp CCEEEEEEEHH
T ss_pred CceEEEEcCHH
Confidence 79999999853
No 60
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=85.35 E-value=2.5 Score=46.65 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--h-hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS--L-QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PS 475 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~--l-~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~ 475 (603)
++..+++.+.|.+.. -+.++.+ + |+.. + +.|.+. +=|++. ...|++++.+|.|.|+. |...+|.. ..
T Consensus 4 ~~~a~~l~~~L~~~G--V~~vfg~-P---G~~~~~l~~al~~~-~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 75 (563)
T 2uz1_A 4 ITGGELVVRTLIKAG--VEHLFGL-H---GAHIDTIFQACLDH-DVPIID-TRHEAAAGHAAEGYARAGAKLGVALVTAG 75 (563)
T ss_dssp EEHHHHHHHHHHHHT--CCCEEEC-C---CGGGHHHHHHHHHH-TCCEEE-CSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHCC--CCEEEEC-C---CCchHHHHHHHHhc-CCcEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 455666767666543 2344443 2 2222 2 445433 344544 68999999999999986 64444433 66
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCC-hhhHHHHhcCCCcEEEecCCHHHHHHHHHHHH----hCC
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVA----SID 550 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~-~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~ 550 (603)
+=+..++.-|.+ +-..+.||+++.........+-..||. .....+++.+--... ...+++++..+++.|+ ...
T Consensus 76 pG~~N~~~~l~~-A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 76 GGFTNAVTPIAN-AWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAH-RVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHHHTTHHHHHH-HHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEE-ECCCGGGHHHHHHHHHHHHHSSS
T ss_pred ccHHHHHHHHHH-HHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEE-EcCCHHHHHHHHHHHHHHhcCCC
Confidence 555677777765 356789999987654442111123777 777788888876543 4456666665555443 345
Q ss_pred CCcEEEEeecC
Q 007443 551 DRPVCFRYPRG 561 (603)
Q Consensus 551 ~~P~~ir~~r~ 561 (603)
+|||+|-+|..
T Consensus 154 ~GPV~l~iP~d 164 (563)
T 2uz1_A 154 RGPVLLDLPWD 164 (563)
T ss_dssp CCCEEEEEEHH
T ss_pred CceEEEEeCHH
Confidence 69999999886
No 61
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=85.31 E-value=2.3 Score=47.26 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=79.2
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~dG~tH~~~~dia~l 522 (603)
=....|++++.+|.|.|+. |...+|.. ..+=...++--|.+ +...+.||+++....... |. | .+|......++
T Consensus 54 i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~-A~~~~vPll~itg~~~~~~~g~-~-~~Q~~d~~~~~ 130 (590)
T 1ybh_A 54 VLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLAD-ALLDSVPLVAITGQVPRRMIGT-D-AFQETPIVEVT 130 (590)
T ss_dssp CCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHH-HHHHTCCEEEEEEECCGGGTTT-T-CTTCCCHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHH-HHhhCCCEEEEeCcCCccccCC-C-cccccCHHHHH
Confidence 4578999999999999996 65444433 66656677777765 356899999987554432 32 2 46667777888
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh----CCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (603)
+.+-... +...+++++..+++.|+. ..+|||+|-+|...
T Consensus 131 ~~~~k~~-~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 131 RSITKHN-YLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp GGGSSEE-EECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHhCeE-EecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 9887765 445677788877777754 24689999998754
No 62
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=85.16 E-value=2.1 Score=47.52 Aligned_cols=115 Identities=7% Similarity=-0.057 Sum_probs=76.8
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCe-EEEEecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCC-CCCCCCChhhHH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS-DGPTQCGAFDIT 520 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~-P~~~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~-dG~tH~~~~dia 520 (603)
|++. ...|++++-+|-|.|+. |.. .++.+..+=...++.-|.+ +...+.||+++......... .|..||......
T Consensus 45 ~~v~-~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~-A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~ 122 (589)
T 2pgn_A 45 RVIN-PATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQE-ARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS 122 (589)
T ss_dssp TCBC-CSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHH-HHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG
T ss_pred eEEE-eCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHH-HHhcCCCEEEEecCCcccccCCCCcccccChhh
Confidence 4443 58999999999999985 543 3444477777777888766 36789999998755444211 221577777677
Q ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHH----hCCCCcEEEEeecCC
Q 007443 521 FMSCLPNMIVMAPSDEDELVDMVATVA----SIDDRPVCFRYPRGA 562 (603)
Q Consensus 521 ~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 562 (603)
++.+--... ...+++++...++.|+ ...+|||+|-+|...
T Consensus 123 -~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 123 -FTPIARSTQ-RVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp -GTTTSSEEE-ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred -ccccEEEEe-ecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 777765544 3455655555555443 334589999999863
No 63
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=83.82 E-value=9 Score=42.64 Aligned_cols=151 Identities=8% Similarity=-0.045 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEE-E-EecH
Q 007443 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPF-C-IIPS 475 (603)
Q Consensus 402 s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l---~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~-~-~~~~ 475 (603)
+..+++.+.|.+ ..=+.|+..+ |+..+ +.|.+ .++=-+-....|++++-+|.|.|+. |-+|. | .+..
T Consensus 28 ~~a~~l~~~L~~---~GV~~vfg~P---G~~~~~l~~al~~-~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsG 100 (616)
T 2pan_A 28 RAVDAAMYVLEK---EGITTAFGVP---GAAINPFYSAMRK-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSG 100 (616)
T ss_dssp EHHHHHHHHHHH---TTCCEEEECC---CGGGHHHHHHHHH-HCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECST
T ss_pred cHHHHHHHHHHH---CCCCEEEECC---CCccHHHHHHHHh-cCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 455666555542 2333444433 22222 34433 2433344679999999999999986 44443 3 3466
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCCC-CCCCCCCCChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh----CC
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGLV-GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS----ID 550 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~-g~dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~----~~ 550 (603)
+=...++.-|.+ +.+.+.||+++....... -..| .+|......+++.+--..... .+++++..+++.|+. ..
T Consensus 101 pG~~N~~~~l~~-A~~~~vPlvvItg~~p~~~~~~~-~~Q~~d~~~~~~~~tk~~~~v-~~~~~i~~~l~~A~~~A~~~r 177 (616)
T 2pan_A 101 PAGTDMITALYS-ASADSIPILCITGQAPRARLHKE-DFQAVDIEAIAKPVSKMAVTV-REAALVPRVLQQAFHLMRSGR 177 (616)
T ss_dssp HHHHTSHHHHHH-HHHTTCCEEEEEEECCGGGTTTT-CTTCCCHHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHH-HHhcCCCEEEEecCCcccccCcc-cccccCHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHhcCC
Confidence 656677788766 466899999987554331 1122 355556668888877665544 567777777776653 24
Q ss_pred CCcEEEEeecCC
Q 007443 551 DRPVCFRYPRGA 562 (603)
Q Consensus 551 ~~P~~ir~~r~~ 562 (603)
+|||+|-+|...
T Consensus 178 ~GPV~l~iP~d~ 189 (616)
T 2pan_A 178 PGPVLVDLPFDV 189 (616)
T ss_dssp CCCEEEEEEHHH
T ss_pred CceEEEEcchhh
Confidence 689999988753
No 64
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=82.81 E-value=22 Score=39.03 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=88.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PS 475 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l---~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~ 475 (603)
++..+++.+.|.+. .=+.|+..+ |+..+ +.|.+ .++=-+=....|++++.+|.|.|+. | ..+|.. ..
T Consensus 3 ~~~a~~l~~~L~~~---GV~~vfg~P---G~~~~~l~~al~~-~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsG 74 (566)
T 2vbi_A 3 YTVGMYLAERLVQI---GLKHHFAVA---GDYNLVLLDQLLL-NKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFS 74 (566)
T ss_dssp CBHHHHHHHHHHHH---TCSEEEECC---CTTTHHHHHHHHT-CTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTT
T ss_pred cCHHHHHHHHHHHc---CCCEEEeCC---CCccHHHHHHHhc-CCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCC
Confidence 34556666666554 223344333 22222 33432 2321233478999999999999985 8 544444 55
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCCh------hhHHHHhcCCCcEEEecCCHHH----HHHHH
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSDEDE----LVDMV 543 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~------~dia~lr~iPnl~V~~Psd~~e----~~~~l 543 (603)
+=...++.-|.. +...+.||+++...... .+.+...||.. ....+++.+--..+.. .++++ +..++
T Consensus 75 pG~~N~~~gia~-A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v-~~~~~~~~~l~~A~ 152 (566)
T 2vbi_A 75 VGAISAMNALGG-AYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESI-TDAHSAPAKIDHVI 152 (566)
T ss_dssp TTHHHHHHHHHH-HHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEE-CSSSSHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEe-CCHHHHHHHHHHHH
Confidence 545667777765 35689999998765444 23222244422 3468888775544333 34443 44455
Q ss_pred HHHHhCCCCcEEEEeecCCC
Q 007443 544 ATVASIDDRPVCFRYPRGAI 563 (603)
Q Consensus 544 ~~a~~~~~~P~~ir~~r~~~ 563 (603)
+.|... .+||+|-+|....
T Consensus 153 ~~a~~~-~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 153 RTALRE-RKPAYLDIACNIA 171 (566)
T ss_dssp HHHHHH-TCCEEEEEETTTT
T ss_pred HHHHhC-CCCEEEEechhhc
Confidence 555443 5999999998753
No 65
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=82.77 E-value=14 Score=40.47 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCC-----h-h
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG-----A-F 517 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~-----~-~ 517 (603)
....|++++.+|.|.|+. | ..+|.. ..+=...++.-|.. +...+.||+++...... .+.+...||. . .
T Consensus 46 ~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~-A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d 123 (568)
T 2wvg_A 46 YCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGG-AYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123 (568)
T ss_dssp ECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHH-HHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCH
T ss_pred ccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHH-HhhhCCCEEEEeCCCChhHhccCcceeeeccccchHH
Confidence 459999999999999974 7 433333 55545667777765 46689999998765444 2333334442 2 3
Q ss_pred hHHHHhcCCCcEEEecCCHHHHHH----HHHHHHhCCCCcEEEEeecCC
Q 007443 518 DITFMSCLPNMIVMAPSDEDELVD----MVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 518 dia~lr~iPnl~V~~Psd~~e~~~----~l~~a~~~~~~P~~ir~~r~~ 562 (603)
...+++.+--.... ..+++++.. +++.|... .+||+|-+|...
T Consensus 124 ~~~~~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~dv 170 (568)
T 2wvg_A 124 QLEMAKNITAAAEA-IYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNI 170 (568)
T ss_dssp HHHHHTTSCSCEEE-ECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGGG
T ss_pred HHHHHHhhEeEEEE-eCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhH
Confidence 46888877666433 345555444 44445433 599999999865
No 66
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=81.64 E-value=4.8 Score=43.89 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=73.9
Q ss_pred ecchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCChhhHHHH
Q 007443 447 DVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFM 522 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~~dia~l 522 (603)
=....|++++.+|.|.|+. |...+|.. ..+=+..++.-|.+ +...+.||+++...... .+.+..+|. .....++
T Consensus 42 i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~-A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~~~~ 119 (528)
T 1q6z_A 42 ILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN-AWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAANLP 119 (528)
T ss_dssp EECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH-HHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGGGSS
T ss_pred EEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH-HhhcCCCEEEEeCCCcccccCCCccccc-ccHHHHH
Confidence 3578999999999999996 66555544 44445677777766 46689999998755433 243333332 3555677
Q ss_pred hcCCCcEEEecCCHHHH----HHHHHHHHhCCCCcEEEEeecCC
Q 007443 523 SCLPNMIVMAPSDEDEL----VDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 523 r~iPnl~V~~Psd~~e~----~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
+.+...... +.+++++ ..+++.|....+|||+|-+|...
T Consensus 120 ~~~~k~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 120 RPLVKWSYE-PASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp TTSCSCEEC-CSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHhhHhhhc-CCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 766655443 3445444 44555554455689999999865
No 67
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=80.50 E-value=24 Score=38.57 Aligned_cols=147 Identities=10% Similarity=0.088 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCCCCcch---hhhhHhCCC-CeeecchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHH
Q 007443 407 FIEALVMEAEKD-KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQ 479 (603)
Q Consensus 407 ~~~aL~~~~~~d-~~vvvi~aDl~~~~~l---~~f~~~fp~-R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ 479 (603)
.++.|.+.+++. =+.|+..+ |+..+ +.|.+ .++ |++ ....|++++-+|-|.|+. |...+|. +..+=..
T Consensus 10 ~a~~lv~~L~~~GV~~vFg~P---G~~~~~l~dal~~-~~~i~~i-~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICIAP---GSRSTLLTLAAAE-NSAFIHH-THFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEECC---CTTSHHHHHHHHH-CTTCEEE-ECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEcC---CCCcHHHHHHHhh-CCCceEE-EecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 455555555443 23333322 23222 34433 344 444 366899999999999985 6544443 3666556
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCChhhHHHHhcCCCcEEEe--cCC---HHHHHHHHHHHHh-CCC
Q 007443 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMA--PSD---EDELVDMVATVAS-IDD 551 (603)
Q Consensus 480 ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~~dia~lr~iPnl~V~~--Psd---~~e~~~~l~~a~~-~~~ 551 (603)
.++--|.. +...+.||+++...... .|. | .||......+++.+--..... |.+ +.++..+++.|+. ..+
T Consensus 85 N~~~gia~-A~~d~vPll~itG~~~~~~~g~-~-~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPALIE-AGLTGEKLILLTADRPPELIDC-G-ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHHHH-HHHHCCCEEEEEEECCGGGSSS-S-CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHHHH-HHHhCCCeEEEeCCCCHHHhcc-C-CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 66666655 35688999998754433 232 2 377776677777766555444 332 3568888888874 246
Q ss_pred CcEEEEeecC
Q 007443 552 RPVCFRYPRG 561 (603)
Q Consensus 552 ~P~~ir~~r~ 561 (603)
|||+|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 8999999974
No 68
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=78.56 E-value=4.5 Score=45.03 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=74.1
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEE-EecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCChhhHHHHh
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMS 523 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~-~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~~dia~lr 523 (603)
....|++++-+|-|.|+. |...+| .+..+=...++.-|.. +-..+.||+++...... .|.+ .+|......+++
T Consensus 74 ~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~-A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~~~~~ 150 (604)
T 2x7j_A 74 VQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVE-AHYSRVPIIVLTADRPHELREVG--APQAINQHFLFG 150 (604)
T ss_dssp ECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHH-HHHHTCCEEEEEEECCGGGSSSC--CTTCCCCTTTTG
T ss_pred EecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHH-HhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHHHHhh
Confidence 458999999999999985 543333 3366656666666655 35678999998754433 2322 356666667777
Q ss_pred cCCCcEEEe--cCC--------HHHHHHHHHHHHhCCCCcEEEEeecCC
Q 007443 524 CLPNMIVMA--PSD--------EDELVDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 524 ~iPnl~V~~--Psd--------~~e~~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
.+--..... |.+ +..+..+++.|....+|||+|-+|...
T Consensus 151 ~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 151 NFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp GGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred hheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 776555443 443 345566666664445799999999764
No 69
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=78.17 E-value=9.7 Score=42.33 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=88.4
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--h-hhhhHhCCC-CeeecchhhHHHHHHHHHHhcC-CCeEEEE-e
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS--L-QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-I 473 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~--l-~~f~~~fp~-R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~ 473 (603)
+++..+++.+.|.+.. -+.|+.+ + |+.. + +.|.+.-++ |++ ....|++++-+|.|.|+. |...+|. +
T Consensus 10 ~~~~a~~l~~~L~~~G--V~~vfg~-P---G~~~~~l~dal~~~~~~i~~i-~~~hE~~Aa~aA~GyAr~tg~~gv~~~T 82 (603)
T 4feg_A 10 NILAGAAVIKVLEAWG--VDHLYGI-P---GGSINSIMDALSAERDRIHYI-QVRHEEVGAMAAAADAKLTGKIGVCFGS 82 (603)
T ss_dssp EEEHHHHHHHHHHHTT--CCEEEEC-C---CGGGHHHHHHHHHTTTTSEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred eeeHHHHHHHHHHHCC--CCEEEEe-C---CCchHHHHHHHHhccCCCeEE-EecChHHHHHHHHHHHHHhCCceEEEec
Confidence 3455666666665432 1333333 2 2222 2 444432122 333 567999999999999985 6544443 4
Q ss_pred cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcCCCcEEEe--cCC-HHHHHHHHHHHHhCC
Q 007443 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMA--PSD-EDELVDMVATVASID 550 (603)
Q Consensus 474 ~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~iPnl~V~~--Psd-~~e~~~~l~~a~~~~ 550 (603)
+.+=...++.-|.+ +...+.||+++.......-.+-..+|......+++.+--..... |.+ +..+..+++.|.. .
T Consensus 83 sGpG~~N~~~gia~-A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~ 160 (603)
T 4feg_A 83 AGPGGTHLMNGLYD-AREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-H 160 (603)
T ss_dssp TTHHHHTTHHHHHH-HHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-H
T ss_pred CCchHHHHHHHHHH-HHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-C
Confidence 66655677777765 35689999998754333211112345555567777665544333 333 2334445566654 4
Q ss_pred CCcEEEEeecCC
Q 007443 551 DRPVCFRYPRGA 562 (603)
Q Consensus 551 ~~P~~ir~~r~~ 562 (603)
.|||+|-+|...
T Consensus 161 ~GPV~l~iP~dv 172 (603)
T 4feg_A 161 QGVAVVQIPVDL 172 (603)
T ss_dssp TSEEEEEEETTG
T ss_pred CCCEEEEeChhh
Confidence 799999999864
No 70
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=77.12 E-value=5 Score=44.18 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=91.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEE-EecHHh
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAF 477 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~-~~~~~F 477 (603)
++..+++.+.|.+.. -+.|+.+ +- .....+ ..+.+ ..=|++ ....|++++-+|.|.|+. |...+| .+..+=
T Consensus 8 ~~~a~~l~~~L~~~G--V~~vfg~-PG-~~~~~l~~al~~-~~i~~i-~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG 81 (564)
T 2q28_A 8 TDGMHIIVEALKQNN--IDTIYGV-VG-IPVTDMARHAQA-EGIRYI-GFRHEQSAGYAAAASGFLTQKPGICLTVSAPG 81 (564)
T ss_dssp EEHHHHHHHHHHHTT--CCEEEEC-CC-TTTHHHHHHHHH-TTCEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEECSHHH
T ss_pred CcHHHHHHHHHHHcC--CCEEEEC-CC-cchHHHHHHHHh-CCCcEE-eeCCHHHHHHHHHHHHHHhCCCEEEEEccCch
Confidence 456666666665432 1334433 31 011222 33433 222444 458999999999999996 543333 347766
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CC-CCCCCCChhhHHHHhcCCCcEEEecCCHHHHHH----HHHHHHhCC
Q 007443 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLV--GS-DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVD----MVATVASID 550 (603)
Q Consensus 478 l~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~-dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~----~l~~a~~~~ 550 (603)
...++.-|.. +...+.||+++....... +. .| .+|......+++.+--..... .+++++.. +++.|....
T Consensus 82 ~~N~~~gi~~-A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~ 158 (564)
T 2q28_A 82 FLNGLTALAN-ATVNGFPMIMISGSSDRAIVDLQQG-DYEELDQMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGR 158 (564)
T ss_dssp HHHHHHHHHH-HHHHTCCEEEEEEECCHHHHHTTSC-CTTCCCHHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHH-HHhcCCCEEEEeCCCCccccCCCCC-ccccccHHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCC
Confidence 6777777765 356899999987554331 21 12 466667778888887665544 34444444 445554335
Q ss_pred CCcEEEEeecCC
Q 007443 551 DRPVCFRYPRGA 562 (603)
Q Consensus 551 ~~P~~ir~~r~~ 562 (603)
+|||+|-+|...
T Consensus 159 ~GPV~l~iP~dv 170 (564)
T 2q28_A 159 PGGVYLDLPANV 170 (564)
T ss_dssp CCEEEEEEEHHH
T ss_pred CceEEEEcCHHH
Confidence 799999998863
No 71
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=77.06 E-value=11 Score=41.31 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEEEe-cHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCCh------h
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------F 517 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~------~ 517 (603)
....|++++-+|.|.|+. | .++|.. ..+=...++.-|.. +...+.||+++...... .+.+-..||.. +
T Consensus 47 ~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~-A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~ 124 (563)
T 2vk8_A 47 GNANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAG-SYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124 (563)
T ss_dssp CCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHH-HHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSH
T ss_pred ccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHHHH-HHhhCCCEEEEECCCChHHhhcccccccccCCcchHH
Confidence 478999999999999984 7 555444 66555566666655 35578999998765433 12222333321 2
Q ss_pred hHHHHhcCCCcEEEecCC----HHHHHHHHHHHHhCCCCcEEEEeecCC
Q 007443 518 DITFMSCLPNMIVMAPSD----EDELVDMVATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 518 dia~lr~iPnl~V~~Psd----~~e~~~~l~~a~~~~~~P~~ir~~r~~ 562 (603)
...+++.+--..... .+ +..+..+++.|... .+||+|-+|...
T Consensus 125 ~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 125 FHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp HHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred HHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 357788776554443 34 45566677766544 599999999875
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=77.05 E-value=23 Score=38.96 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=74.1
Q ss_pred CeeecchhhHHHHHHHHHHhcC-CCeEEEE-ecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCChhhH
Q 007443 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (603)
Q Consensus 444 R~id~GIaE~~~vg~AaGlA~~-G~~P~~~-~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~~di 519 (603)
|++ ...-|++++-+|.|.|+. |...+|. +..+=...++--|.. +...+.||+++...... .| .| .+|.+...
T Consensus 51 ~~i-~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~-A~~d~vPll~itG~~p~~~~g-~~-~~Qe~d~~ 126 (578)
T 3lq1_A 51 KIY-VDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAE-ANLSQIPLIVLTADRPHELRN-VG-APQAMDQL 126 (578)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHH-HHHTTCCEEEEEEECCGGGTT-SS-CTTCCCCT
T ss_pred eEE-EecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHH-HHhcCCCeEEEeCCCCHHhhc-CC-CCCCcCHh
Confidence 344 456999999999999985 6544443 366555666667655 35689999998754333 12 22 35666666
Q ss_pred HHHhcCCCcEEE--ecCCHH--------HHHHHHHHHHhCCCCcEEEEeecC
Q 007443 520 TFMSCLPNMIVM--APSDED--------ELVDMVATVASIDDRPVCFRYPRG 561 (603)
Q Consensus 520 a~lr~iPnl~V~--~Psd~~--------e~~~~l~~a~~~~~~P~~ir~~r~ 561 (603)
.+++.+--.... .|.+.. .+..+++.|....+|||+|-+|..
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 777766554443 455533 355666666544589999999974
No 73
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=76.78 E-value=5.1 Score=44.19 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=92.4
Q ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch-hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEE-EecHH
Q 007443 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSA 476 (603)
Q Consensus 400 ~~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l-~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~-~~~~~ 476 (603)
.++..+++.+.|.+.. -+.|+.+-.+ ....+ ..+.+ ..=|++ ....|++++-+|-|.|+. |...+| .+..+
T Consensus 9 ~~~~a~~l~~~L~~~G--V~~vfg~PG~--~~~~l~~al~~-~~i~~i-~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGp 82 (568)
T 2c31_A 9 LTDGFHVLIDALKMND--IDTMYGVVGI--PITNLARMWQD-DGQRFY-SFRHEQHAGYAASIAGYIEGKPGVCLTVSAP 82 (568)
T ss_dssp EEEHHHHHHHHHHHTT--CCEEEECCCT--TTHHHHHHHHH-TTCEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEECSHH
T ss_pred cccHHHHHHHHHHHcC--CCEEEEeCCC--ccHHHHHHHHh-CCCcEE-EeCcHHHHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3566666666665432 2334443221 11222 33433 222444 459999999999999986 653343 34776
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEeCCCCC--CC-CCCCCCChhhHHHHhcCCCcEEEecCCHHHHHH----HHHHHHhC
Q 007443 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GS-DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVD----MVATVASI 549 (603)
Q Consensus 477 Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~--g~-dG~tH~~~~dia~lr~iPnl~V~~Psd~~e~~~----~l~~a~~~ 549 (603)
=...++.-|.. +...+.||+++....... +. .| .+|......+++.+--..... .+++++.. +++.|...
T Consensus 83 G~~N~~~~i~~-A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~ 159 (568)
T 2c31_A 83 GFLNGVTSLAH-ATTNCFPMILLSGSSEREIVDLQQG-DYEEMDQMNVARPHCKASFRI-NSIKDIPIGIARAVRTAVSG 159 (568)
T ss_dssp HHHHHHHHHHH-HHHHTCCEEEEEEECCHHHHHTTCC-CTTCCCHHHHSGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHH-HHhcCCCEEEEccCCCccccCCCCC-cccccCHHHHHHhhhheeeec-CCHHHHHHHHHHHHHHhcCC
Confidence 66777777765 356899999987554331 21 22 456666678888776665444 45545544 44445433
Q ss_pred CCCcEEEEeecCC
Q 007443 550 DDRPVCFRYPRGA 562 (603)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (603)
.+|||+|-+|...
T Consensus 160 ~~GPV~l~iP~dv 172 (568)
T 2c31_A 160 RPGGVYVDLPAKL 172 (568)
T ss_dssp SCCEEEEEEETHH
T ss_pred CCceEEEeCCHHH
Confidence 5799999999863
No 74
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=76.41 E-value=11 Score=42.14 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=44.0
Q ss_pred CcCcCchh-hhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~G-~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~s 255 (603)
.|.+|..= ..+++|.|+|++ |....+++..+++.. .+++.+.+++..+.|+++++..-+.+
T Consensus 357 ~~d~gIaE~~~v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~ 418 (616)
T 3mos_A 357 FIECYIAEQNMVSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVS 418 (616)
T ss_dssp EEECCSCHHHHHHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGG
T ss_pred eEEcCccHHHHHHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCcc
Confidence 35566543 345677788776 544567778999864 78999999888889999887766653
No 75
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=75.77 E-value=20 Score=39.27 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---hhhhHhCCCCeeecchhhHHHHHHHHHHhc-CCCeEEEEe-cH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPFCII-PS 475 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l---~~f~~~fp~R~id~GIaE~~~vg~AaGlA~-~G~~P~~~~-~~ 475 (603)
++..+++.+.|.+. .=+.|+..+ |+..+ +.|.+ .++=-+-....|++++.+|.|.|+ .| ..+|.. ..
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg~P---G~~~~~l~~al~~-~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsG 96 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFGVP---GDYNLQFLDQIIS-REDMKWIGNANELNASYMADGYARTKK-AAAFLTTFG 96 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECC---CGGGHHHHHHHHH-CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETT
T ss_pred CCHHHHHHHHHHHc---CCCEEEECC---CcchHHHHHHHhc-CCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCC
Confidence 45556666655543 223344433 22222 33433 344334568899999999999996 48 444433 77
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCCh------hhHHHHhcCCCcEEEecCCHHHHHH----HH
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSDEDELVD----MV 543 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~------~dia~lr~iPnl~V~~Psd~~e~~~----~l 543 (603)
+-...++.-|.. +...+.||+++...... .+.+...||.. +...+++.+.-.....+. +++.. ++
T Consensus 97 pG~~N~~~gi~~-A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~--~~~~~~l~~A~ 173 (570)
T 2vbf_A 97 VGELSAINGLAG-SYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA--ENATYEIDRVL 173 (570)
T ss_dssp HHHHHHHHHHHH-HHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--TTHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--ccHHHHHHHHH
Confidence 766777777765 46689999998755443 23333455522 235777877765555543 44444 44
Q ss_pred HHHHhCCCCcEEEEeecCC
Q 007443 544 ATVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 544 ~~a~~~~~~P~~ir~~r~~ 562 (603)
+.|... .+||+|-+|...
T Consensus 174 ~~A~~~-~GPV~l~iP~d~ 191 (570)
T 2vbf_A 174 SQLLKE-RKPVYINLPVDV 191 (570)
T ss_dssp HHHHHH-CCCEEEEEEHHH
T ss_pred HHHhhC-CCCEEEEcchhh
Confidence 455433 599999998753
No 76
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=75.03 E-value=11 Score=41.30 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCeEEE-EecHHhHHHHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCCCChhhHHHHhcC
Q 007443 448 VGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL 525 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~-G~~P~~-~~~~~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH~~~~dia~lr~i 525 (603)
....|++++-+|-|.|+. |...+| .++.+=...++.-|.+ +...+.||+++.......-.+-..+|......+++.+
T Consensus 46 ~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~-A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~ 124 (549)
T 3eya_A 46 STRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFD-CHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFREC 124 (549)
T ss_dssp ECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHH-HHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTT
T ss_pred EeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHH-HHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhh
Confidence 467999999999999985 644443 3466655667777765 3568999999875433311111235666677888877
Q ss_pred CCcEEEecCCHHHHHHHHH----HHHhCCCCcEEEEeecCC
Q 007443 526 PNMIVMAPSDEDELVDMVA----TVASIDDRPVCFRYPRGA 562 (603)
Q Consensus 526 Pnl~V~~Psd~~e~~~~l~----~a~~~~~~P~~ir~~r~~ 562 (603)
-..... ..+++++...++ .|.. ..+|++|-+|...
T Consensus 125 tk~~~~-v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~dv 163 (549)
T 3eya_A 125 SHYCEL-VSSPEQIPQVLAIAMRKAVL-NRGVSVVVLPGDV 163 (549)
T ss_dssp CSEEEE-CCSGGGHHHHHHHHHHHHHH-TTSEEEEEEEHHH
T ss_pred hheEEE-eCCHHHHHHHHHHHHHHHhh-CCCCEEEEeChhH
Confidence 654433 345555555444 4444 4799999998743
No 77
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=73.32 E-value=25 Score=38.38 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcch---hhhhHhCCCCeeecchhhHHHHHHHHHHhcC-CCeEEEEe-cH
Q 007443 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PS 475 (603)
Q Consensus 401 ~s~~~a~~~aL~~~~~~d~~vvvi~aDl~~~~~l---~~f~~~fp~R~id~GIaE~~~vg~AaGlA~~-G~~P~~~~-~~ 475 (603)
++..+++.+.|.+. .=+.|+..+ |+..+ +.|.+ .++=-+-....|++++-+|.|.|+. | .++|.. ..
T Consensus 5 ~~~a~~l~~~L~~~---GV~~vfg~P---G~~~~~l~~al~~-~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsG 76 (552)
T 1ovm_A 5 YCVADYLLDRLTDC---GADHLFGVP---GDYNLQFLDHVID-SPDICWVGCANELNASYAADGYARCKG-FAALLTTFG 76 (552)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECC---CGGGHHHHHHHHH-CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETT
T ss_pred cCHHHHHHHHHHHc---CCCEEEECC---ChhHHHHHHHHhc-CCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccC
Confidence 45566666666543 223344333 22222 33433 3443345689999999999999985 6 554444 55
Q ss_pred HhHHHHHHHHHHHhhcCCCCeEEEEeCCCC--CCCCCCCCCCh------hhHHHHhcCCCcEEEecCC--HHHHHHHHHH
Q 007443 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSD--EDELVDMVAT 545 (603)
Q Consensus 476 ~Fl~ra~dQi~~~~a~~~lpV~~~~~~~G~--~g~dG~tH~~~------~dia~lr~iPnl~V~~Psd--~~e~~~~l~~ 545 (603)
+=...++--|.. +...+.||+++...... .+.+...||.. +...+++.+--.....+.+ +..+..+++.
T Consensus 77 pG~~N~~~gv~~-A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~ 155 (552)
T 1ovm_A 77 VGELSAMNGIAG-SYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTT 155 (552)
T ss_dssp HHHHHTHHHHHH-HHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHH
Confidence 545666777765 35689999998765433 12222233221 2356777776665555431 3445556666
Q ss_pred HHhCCCCcEEEEeecCC
Q 007443 546 VASIDDRPVCFRYPRGA 562 (603)
Q Consensus 546 a~~~~~~P~~ir~~r~~ 562 (603)
|... .+||+|-+|...
T Consensus 156 a~~~-~GPV~l~iP~d~ 171 (552)
T 1ovm_A 156 MLRE-RRPGYLMLPADV 171 (552)
T ss_dssp HHHH-TCCEEEEEEHHH
T ss_pred HHhC-CCCEEEEeehhh
Confidence 6443 599999998754
No 78
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=72.48 E-value=13 Score=38.12 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=66.8
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEE-EcCCccccchHHHHHHH-hhh--------cCCCEEEEEECCCCCc
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILNDSRHSL 256 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~--------~~~nlivIlndN~~si 256 (603)
.+.+|.. -..+++|.|+|++ | -+.++++ .+++.. .+++.+.+ ++. .+.|+++++..-+ ..
T Consensus 54 ~~~~gisE~~~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~ 124 (338)
T 1qs0_B 54 VFDAPISESGIVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GI 124 (338)
T ss_dssp EEECCSCHHHHHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SS
T ss_pred EEEccccHHHHHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CC
Confidence 3455643 3566788888887 4 3455544 888862 77888764 542 2489888875433 21
Q ss_pred CCCccCCCcccchhhhhhhhhhhhhhhHHHHHHHHhhhhhccccchhHHHHhHHHhhhccCCCChhhHHhhc-CCeEEee
Q 007443 257 HPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEEL-GLYYIGP 335 (603)
Q Consensus 257 ~~t~~~g~s~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~-G~~~ig~ 335 (603)
+|++..... + ..++... ||.++.
T Consensus 125 -----~G~th~s~~----------------------------------------d----------~~~l~~iP~l~V~~- 148 (338)
T 1qs0_B 125 -----YGGQTHSQS----------------------------------------P----------EAMFTQVCGLRTVM- 148 (338)
T ss_dssp -----SCCSSSSCC----------------------------------------C----------HHHHTTSTTCEEEC-
T ss_pred -----CCccccccc----------------------------------------H----------HHHHhcCCCCEEEe-
Confidence 232211100 0 1223444 888884
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 336 VDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 336 vDGhD~~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
..|..+....++.+.+. ++|++|-..+
T Consensus 149 --Psd~~e~~~~l~~A~~~--~~Pv~i~~p~ 175 (338)
T 1qs0_B 149 --PSNPYDAKGLLIASIEC--DDPVIFLEPK 175 (338)
T ss_dssp --CCSHHHHHHHHHHHHHS--SSCEEEEEEG
T ss_pred --eCCHHHHHHHHHHHHhc--CCcEEEEEch
Confidence 45788888888888776 7999996553
No 79
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=71.90 E-value=16 Score=37.61 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=39.1
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEE-EEcCCccccchHHHHHHHhhh---------cCCCEEEEEECCCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVT-VISNGTTMAGQAYEAMSNAGY---------LDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~-viGDGal~eG~~~EAln~A~~---------~~~nlivIlndN~~ 254 (603)
.+.+|.. -..+++|.|+|++ | -+++++ ..+|.. ..+++.+.+.+. .+.|+++++.. +.
T Consensus 64 ~~d~gIaE~~~v~~a~G~A~~----G-~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~ 132 (341)
T 2ozl_B 64 IIDTPISEMGFAGIAVGAAMA----G-LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA 132 (341)
T ss_dssp EEECCSCHHHHHHHHHHHHHT----T-CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC
T ss_pred EEECchhHHHHHHHHHHHHHC----C-CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC
Confidence 4566643 3456778888876 4 345555 388877 377888876542 67999999884 53
No 80
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=67.53 E-value=19 Score=36.70 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=36.0
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEE-EcCCccccchHHHHHHH-hhh--------cCCCEEEEEE
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILN 250 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~--------~~~nlivIln 250 (603)
.+.+|.. -..+++|.|+|++ | -+.++++ .++... .++|.+.+ ++. .+.|+++++.
T Consensus 52 ~~~~gIaE~~~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 117 (324)
T 1w85_B 52 VFDTPLAESGIGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP 117 (324)
T ss_dssp EEECCSCHHHHHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE
T ss_pred EEEcchhHHHHHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe
Confidence 4556643 3566778888876 3 3445543 788762 77888865 443 5688888876
No 81
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=65.36 E-value=20 Score=36.91 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=35.6
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEE-EEcCCccccchHHHHHH-Hhhhc--------CC-CEEEEEEC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVT-VISNGTTMAGQAYEAMS-NAGYL--------DS-NMIVILND 251 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~-viGDGal~eG~~~EAln-~A~~~--------~~-nlivIlnd 251 (603)
.+.+|.. -..+++|.|+|++ | -+.+++ ..+++.. .+++.+. .++.+ +. |+++++..
T Consensus 69 ~~~~gIaE~~~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~ 136 (342)
T 2bfd_B 69 VFNTPLCEQGIVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW 136 (342)
T ss_dssp EEECCSCHHHHHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE
T ss_pred EEEcCcCHHHHHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEec
Confidence 3556643 3556778888876 4 345665 3888853 7888886 34422 33 99998764
No 82
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=64.69 E-value=37 Score=38.14 Aligned_cols=61 Identities=10% Similarity=-0.064 Sum_probs=43.1
Q ss_pred CcCcCchhh-hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 007443 188 PFNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 188 ~~~~G~~G~-~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~s 255 (603)
.|.+|..=+ .+++|.|||+. |.-+++++.+.+=. -.+++++..++..+.|++++....+.+
T Consensus 384 ~~d~GIaE~~~v~~a~GlA~~----gG~~P~~~~f~~F~---~~~~~~ir~~a~~~~pv~~~~t~~g~g 445 (632)
T 3l84_A 384 NIHFGIREHAMAAINNAFARY----GIFLPFSATFFIFS---EYLKPAARIAALMKIKHFFIFTHDSIG 445 (632)
T ss_dssp EEECCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGH---HHHHHHHHHHHHHTCCCEEEEECCSGG
T ss_pred eEEeCccHHHHHHHHHHHHHc----CCCEEEEEecHHHH---HHHHHHHHHHhccCCCEEEEEECCCcC
Confidence 567776544 45778888876 34456777665433 267888988888899999998777654
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=63.78 E-value=43 Score=37.76 Aligned_cols=62 Identities=6% Similarity=0.016 Sum_probs=43.6
Q ss_pred CCcCcCchhh-hHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 007443 187 DPFNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (603)
Q Consensus 187 d~~~~G~~G~-~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~~s 255 (603)
..+.+|..=+ .+++|.|||+. |.-+++++.+.+-.. ..++++..++..+.|++++....+.+
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g 466 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIG 466 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGG
T ss_pred CeEecCccHHHHHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccc
Confidence 3566776544 45778888875 445667776665442 56788988888899999998766654
No 84
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=63.70 E-value=23 Score=40.16 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=57.9
Q ss_pred CeEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCCC-ChhhH-HHHhcCCCcEEEec---CCHHH
Q 007443 467 LKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAP---SDEDE 538 (603)
Q Consensus 467 ~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH~-~~~di-a~lr~iPnl~V~~P---sd~~e 538 (603)
.+.+|.+ =..|.. .+++.+.. ++..++| ++++....++. -+|+++. ..+|+ ..++.. |+.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Eal~~-A~~~~L~~livI~dnN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEASSL-AAHLQLGRLVVLYDSNDIS-LDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSBC-SSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHHHHH-HHHhCCCeEEEEEECCCee-cccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 3444444 444542 45666655 5778886 77777776663 3444432 23343 344444 8999988 68899
Q ss_pred HHHHHHHHHhCCCCcEEEEee
Q 007443 539 LVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+..+++.+....++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999985536899998663
No 85
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=63.51 E-value=15 Score=38.45 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=52.6
Q ss_pred CeEEEEe-cHHhHH-HHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--C---ChhhHHHHhcCCCcEEEecCCHHHH
Q 007443 467 LKPFCII-PSAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--C---GAFDITFMSCLPNMIVMAPSDEDEL 539 (603)
Q Consensus 467 ~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--~---~~~dia~lr~iPnl~V~~Psd~~e~ 539 (603)
..+|+.+ =..|.+ -.++.+.. ++..++||++++...++. ..++++ . ...+++-.-.+|++.| .=.|+.++
T Consensus 165 ~~vv~i~GDGa~~~G~~~Eal~~-A~~~~lpvi~vv~NN~~g-i~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~av 241 (368)
T 1w85_A 165 AVAITYTGDGGTSQGDFYEGINF-AGAFKAPAIFVVQNNRFA-ISTPVEKQTVAKTLAQKAVAAGIPGIQV-DGMDPLAV 241 (368)
T ss_dssp CCEEEEEETGGGGSHHHHHHHHH-HHHTTCCEEEEEEECSEE-TTEEGGGTCSCSCSGGGGGGTTCCEEEE-ETTCHHHH
T ss_pred CeEEEEEchhhhhhcHHHHHHHH-HHHHCcCEEEEEEcCCcc-ceeccccccCCCCHHHHHHHCCCCEEEE-cCCCHHHH
Confidence 3444444 344554 23455544 578999999999777652 122221 1 1223332234666654 33479999
Q ss_pred HHHHHHHHh---CCCCcEEEEe
Q 007443 540 VDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 540 ~~~l~~a~~---~~~~P~~ir~ 558 (603)
...++.|+. ..++|++|-.
T Consensus 242 ~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 242 YAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEE
Confidence 999998875 3578998865
No 86
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=60.37 E-value=28 Score=36.29 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=35.7
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEE-EcCCccccchHHHHHHH-hhhc--------CCCEEEEEECCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGYL--------DSNMIVILNDSR 253 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~~--------~~nlivIlndN~ 253 (603)
.+.+|.. -..+++|.|+|++ | -++++++ .+|... .+++.+.+ ++.+ +.|+++++..-+
T Consensus 100 ~~d~gIaE~~~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 100 VIDTPLNEGGILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp EEECCSCHHHHHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred EEECcccHHHHHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 3556644 3456778888876 4 3556654 888762 77888866 5544 889988887544
No 87
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=59.04 E-value=14 Score=39.10 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred cchhhHHHHHHHHHHhcC------CCeEEEEe-cHHhHHH-HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--CChh
Q 007443 448 VGMAEQHAVTFSAGLACG------GLKPFCII-PSAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--CGAF 517 (603)
Q Consensus 448 ~GIaE~~~vg~AaGlA~~------G~~P~~~~-~~~Fl~r-a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--~~~~ 517 (603)
+|.-.+. +..|+|+|+. +.++|+.+ =..|.+- .++.+. -++..++||++++...++. ..+++. ....
T Consensus 161 ~g~lG~~-lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~-~A~~~~lpvi~vv~NN~~~-i~~~~~~~~~~~ 237 (400)
T 2bfd_A 161 SSPLATQ-IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFN-FAATLECPIIFFCRNNGYA-ISTPTSEQYRGD 237 (400)
T ss_dssp CSSTTTH-HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHH-HHHHTTCCEEEEEEECSEE-TTEEGGGTCSSS
T ss_pred Ccccccc-ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHH-HHHHHCcCEEEEEECCcee-eeecccccCCCC
Confidence 3444333 3455555542 34455544 3445433 335554 4577889999999877662 222222 1223
Q ss_pred hHHHHhcCCCcEEE--ecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 007443 518 DITFMSCLPNMIVM--APSDEDELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 518 dia~lr~iPnl~V~--~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
|++-...--|+.++ .=.|+.++...++.|+. ..++|++|-.
T Consensus 238 d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 238 GIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 33222111244443 23478899988888865 2578998865
No 88
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=56.91 E-value=44 Score=37.26 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHH-HHHhhhcCCCEEEEEECCCC
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA-MSNAGYLDSNMIVILNDSRH 254 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EA-ln~A~~~~~nlivIlndN~~ 254 (603)
.+.+|.. -..+++|.|+|++ | -+++++..++... .++|- ++.++..+.|+++++..-+.
T Consensus 363 ~~~~gIaE~~~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~ 423 (621)
T 2o1s_A 363 YFDVAIAEQHAVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGI 423 (621)
T ss_dssp EEECCSCHHHHHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBC
T ss_pred eEecCcCHHHHHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 4556643 3455678888875 4 4677888888642 66765 56678888999999866554
No 89
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=56.25 E-value=39 Score=38.16 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=56.1
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCCC-ChhhHH-HHhcCCCcEEE-ec---CCHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDIT-FMSCLPNMIVM-AP---SDEDE 538 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH~-~~~dia-~lr~iPnl~V~-~P---sd~~e 538 (603)
+.+|.+ =..+.. ..++.+.. ++..++| ++++....++. -+|++.. ..+|+. .++. -|+.++ .- .|..+
T Consensus 150 ~v~~~~GDG~~~eG~~~Eal~~-A~~~~L~~li~i~d~N~~~-i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~~ 226 (673)
T 1r9j_A 150 YTYVYCGDGCLMEGVCQEALSL-AGHLALEKLIVIYDSNYIS-IDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYEG 226 (673)
T ss_dssp CEEEEECHHHHHSHHHHHHHHH-HHHHTCTTEEEEEEECSBC-SSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHHH
T ss_pred EEEEEECcchhcccHHHHHHHH-HHHhCCCcEEEEEECCCCc-cccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHHH
Confidence 444444 333432 44666655 5778887 88888777663 2344331 134443 4454 489988 43 68899
Q ss_pred HHHHHHHHHhCCCCcEEEEee
Q 007443 539 LVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+..+++.|....++|++|...
T Consensus 227 l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 227 LRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 999999886556899988663
No 90
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=55.92 E-value=28 Score=39.36 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCC-CChhhHH-HHhcCCCcEEEecC----CHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDIT-FMSCLPNMIVMAPS----DEDE 538 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH-~~~~dia-~lr~iPnl~V~~Ps----d~~e 538 (603)
+.+|.+ =..|.. ..++.+.. ++..++| ++++....++. -++++. +..+|+. .++.. |+.++.+. |..+
T Consensus 150 ~vv~i~GDG~~~eG~~~Eal~~-A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~ 226 (680)
T 1gpu_A 150 YTYVFLGDGCLQEGISSEASSL-AGHLKLGNLIAIYDDNKIT-IDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLAG 226 (680)
T ss_dssp CEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHHH
T ss_pred eEEEEECCCccchhhHHHHHHH-HHHhCCCcEEEEEECCCce-EecccccccCccHHHHHHhc-CCeEEEEecCCCCHHH
Confidence 444444 333432 45666654 5778887 88888776663 233333 2234443 44443 88887343 7889
Q ss_pred HHHHHHHHHhCCCCcEEEEee
Q 007443 539 LVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+...++.|....++|++|...
T Consensus 227 l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 227 IAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEEE
Confidence 999999886546899988663
No 91
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=53.75 E-value=34 Score=38.61 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=55.4
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCC-CChhhHH-HHhcCCCcEEEec---CCHHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDIT-FMSCLPNMIVMAP---SDEDEL 539 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH-~~~~dia-~lr~iPnl~V~~P---sd~~e~ 539 (603)
+.||.+ =..|.. ..++.+.. ++..++| ++++....++. -++++. +..+|+. .++. -|+.++.+ .|..++
T Consensus 148 ~v~~~~GDG~~~eG~~~Eal~~-A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~l 224 (669)
T 2r8o_A 148 YTYAFMGDGCMMEGISHEVCSL-AGTLKLGKLIAFYDDNGIS-IDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAASI 224 (669)
T ss_dssp CEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHHH
T ss_pred eEEEEECHhHhcchHHHHHHHH-HHHcCCCcEEEEEECCCcE-eccccccccCccHHHHHHH-CCCeEEeEECCCCHHHH
Confidence 444444 333442 45666655 5778888 78888776663 234333 2234543 4444 38887733 379999
Q ss_pred HHHHHHHHhCCCCcEEEEee
Q 007443 540 VDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~ 559 (603)
...++.+....++|++|...
T Consensus 225 ~~al~~a~~~~~~P~lI~~~ 244 (669)
T 2r8o_A 225 KRAVEEARAVTDKPSLLMCK 244 (669)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 99999986546899988653
No 92
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=51.95 E-value=37 Score=35.28 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=59.4
Q ss_pred ecchhhHHHHHHHHHHhc----CC--CeEEEEe-cHHhHHH-HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC-----
Q 007443 447 DVGMAEQHAVTFSAGLAC----GG--LKPFCII-PSAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ----- 513 (603)
Q Consensus 447 d~GIaE~~~vg~AaGlA~----~G--~~P~~~~-~~~Fl~r-a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH----- 513 (603)
.+|+-++ .++.|.|+|. .+ .++|+.+ =..|.+- ..+.+.. ++..++|+++++...++ |-.+++.
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~-A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINF-AAVQGAPAVFIAENNFY-AISVDYRHQTHS 218 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHH-HHHTTCSEEEEEEECSE-ETTEEHHHHCSS
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHH-HHHhCcCEEEEEecCCe-eeccChhhccCC
Confidence 4555553 2344555543 33 3444444 3445444 4455654 56799999999887774 3333321
Q ss_pred CChhhHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCcEEEEe
Q 007443 514 CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 514 ~~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
....+++-.-.+|.+.| .-.|..++...++.|+. ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11223322224666654 45677777776666653 3578998865
No 93
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=51.62 E-value=63 Score=32.69 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=36.3
Q ss_pred CcCcCch-hhhHHHHHHHHHHHHHcCCCCeEEEE-EcCCccccchHHHHHHH-hhh--------cCCCEEEEEE
Q 007443 188 PFNAGHG-CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILN 250 (603)
Q Consensus 188 ~~~~G~~-G~~is~A~G~A~A~~l~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~--------~~~nlivIln 250 (603)
.+.+|.. -..+++|.|+|++ | -+.++++ .++.. + .+++.+.+ ++. .+.|+++++.
T Consensus 53 ~~~~gIaE~~~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 53 VMDTPLSEAAIVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp EEECCSCHHHHHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred EEECchhHHHHHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 3556654 3456778888887 4 3455554 78875 2 77888865 443 5688888876
No 94
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=50.47 E-value=39 Score=38.53 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=55.4
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCCC-ChhhH-HHHhcCCCcEEEec---CCHHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAP---SDEDEL 539 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH~-~~~di-a~lr~iPnl~V~~P---sd~~e~ 539 (603)
+.|+.+ =..|.. ..++.+.. ++..++| ++++....++. -+|.+.. ..+|+ ..++.. |+.++.| .|..++
T Consensus 189 ~vv~i~GDG~l~eG~~~Eal~~-A~~~~L~~livI~dnN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l 265 (711)
T 3uk1_A 189 HTYVFLGDGCLMEGISHEACSL-AGTLKLNKLIALYDDNGIS-IDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDAI 265 (711)
T ss_dssp CEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHH
T ss_pred eEEEEECCcchhhccHHHHHHH-HHHhCCCcEEEEEECCCcc-cccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHHH
Confidence 444443 344542 55666655 5788998 77787776663 2333321 22343 344554 8887775 478999
Q ss_pred HHHHHHHHhCCCCcEEEEee
Q 007443 540 VDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~ 559 (603)
...++.|. ..++|++|...
T Consensus 266 ~~Al~~A~-~~~~P~lI~v~ 284 (711)
T 3uk1_A 266 DAAIAKAK-RSDKPSLICCK 284 (711)
T ss_dssp HHHHHHHT-TCSSCEEEEEE
T ss_pred HHHHHHHH-hCCCCEEEEEc
Confidence 99999984 46899998663
No 95
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=48.23 E-value=26 Score=37.13 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=50.7
Q ss_pred CCeEEEEe-cHHhHHH-HHHHHHHHhhcCCCCeEEEEeCCCCCCCCCCCC--C-ChhhH---HHHhcCCCcEEEecCCHH
Q 007443 466 GLKPFCII-PSAFLQR-AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--C-GAFDI---TFMSCLPNMIVMAPSDED 537 (603)
Q Consensus 466 G~~P~~~~-~~~Fl~r-a~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~tH--~-~~~di---a~lr~iPnl~V~~Psd~~ 537 (603)
+.++|+.+ =..|.+- .++.+.. ++..++||++++...++. ..+++. . ...|+ +-.-.+|++.| -=.|+.
T Consensus 203 ~~~vv~i~GDGa~~~G~~~Eal~~-A~~~~lpvi~Vv~NN~~g-i~~~~~~~~~~~~d~a~~a~a~G~~~~~V-dG~D~~ 279 (407)
T 1qs0_A 203 TKIASAWIGDGATAESDFHTALTF-AHVYRAPVILNVVNNQWA-ISTFQAIAGGESTTFAGRGVGCGIASLRV-DGNDFV 279 (407)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHH-HHHHTCCEEEEEEECSEE-TTEEGGGGTTTTCCSTHHHHHTTCEEEEE-ETTCHH
T ss_pred CCEEEEEECCchhhcChHHHHHHH-HHHHCcCEEEEEECCCcc-eeeccccccCCCCCHHHHHHHcCCeEEEE-cCCCHH
Confidence 34455444 3335442 3455544 567899999998776652 112221 1 12332 32224555543 334788
Q ss_pred HHHHHHHHHHh---CCCCcEEEEe
Q 007443 538 ELVDMVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 538 e~~~~l~~a~~---~~~~P~~ir~ 558 (603)
++...++.|+. ..++|++|-.
T Consensus 280 av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 280 AVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEE
Confidence 88888888864 2578998865
No 96
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=42.45 E-value=72 Score=35.80 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=54.8
Q ss_pred CeEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCC-CChhhHH-HHhcCCCcEEEecC---CHHH
Q 007443 467 LKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDIT-FMSCLPNMIVMAPS---DEDE 538 (603)
Q Consensus 467 ~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH-~~~~dia-~lr~iPnl~V~~Ps---d~~e 538 (603)
.+.++.+ =..|.. ..++.+.. ++..++| ++++....++. -++++. +..+|+. .++. -|+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal~~-A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAASL-AGHWGLSKLIVFWDDNRIS-IDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECCEE-TTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHHHH-HHHcCCCeEEEEEECCCcc-cccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 3444444 333432 45666655 5778887 88888777663 123222 1134443 4454 488888444 6899
Q ss_pred HHHHHHHHHhCCCCcEEEEee
Q 007443 539 LVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~~ 559 (603)
+...++.|.. .++|++|...
T Consensus 228 l~~al~~a~~-~~~P~lI~~~ 247 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVR 247 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEEE
Confidence 9999998865 6899988653
No 97
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=40.85 E-value=80 Score=35.57 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=55.8
Q ss_pred CeEEEEe-cHHhHH-HHHHHHHHHhhcCCC-CeEEEEeCCCCCCCCCCCC-CChhhH-HHHhcCCCcEEEecC----CHH
Q 007443 467 LKPFCII-PSAFLQ-RAYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQ-CGAFDI-TFMSCLPNMIVMAPS----DED 537 (603)
Q Consensus 467 ~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~l-pV~~~~~~~G~~g~dG~tH-~~~~di-a~lr~iPnl~V~~Ps----d~~ 537 (603)
.+.||.+ =..|.. ..++.+.. ++..++ |++++....++. -+|++. ...+|+ ..++.. |+.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Eal~~-A~~~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEACSL-AGHWGLGKLIAFYDDNHIS-IDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSEE-TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHHHHH-HHHhCCCcEEEEEECCCcc-CCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3444444 334442 45677655 577887 688888777663 123222 113444 345554 89888443 788
Q ss_pred HHHHHHHHHHhCCCCcEEEEee
Q 007443 538 ELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 538 e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
++..+++.|....++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999886546899988663
No 98
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=40.52 E-value=32 Score=35.81 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=49.9
Q ss_pred CeEEEEe-cHHhHH-HHHHHHHHHhhcCCCCeEEEEeCCCCCCCCCC--CCCChhhHHH-HhcCCCcEEEecCCHHHHHH
Q 007443 467 LKPFCII-PSAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP--TQCGAFDITF-MSCLPNMIVMAPSDEDELVD 541 (603)
Q Consensus 467 ~~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lpV~~~~~~~G~~g~dG~--tH~~~~dia~-lr~iPnl~V~~Psd~~e~~~ 541 (603)
..+|+.+ =..|.+ -.++.+.. ++..++||++++...++. ...+ ......|+.- .-.+|++.| -=.|+.++..
T Consensus 163 ~~vv~~~GDGa~~~G~~~Ealn~-A~~~~lpvi~vv~NN~~g-~~t~~~~~~~~~~~~~ra~g~p~~~V-dG~D~~av~~ 239 (365)
T 2ozl_A 163 EVCLTLYGDGAANQGQIFEAYNM-AALWKLPCIFICENNRYG-MGTSVERAAASTDYYKRGDFIPGLRV-DGMDILCVRE 239 (365)
T ss_dssp CCEEEEEETTGGGCHHHHHHHHH-HHHTTCCEEEEEEECSEE-TTEEHHHHCSCCCGGGTTTTSCEEEE-ETTCHHHHHH
T ss_pred ceEEEEECchhhhccHHHHHHHH-HHHHCcCEEEEEECCCcc-cCCCcccccCCCCHHHHhCCCCEEEE-eCCCHHHHHH
Confidence 4444444 333443 24555544 578999999998776652 1110 0111122211 114666654 3347899999
Q ss_pred HHHHHHh---CCCCcEEEEe
Q 007443 542 MVATVAS---IDDRPVCFRY 558 (603)
Q Consensus 542 ~l~~a~~---~~~~P~~ir~ 558 (603)
.++.|+. ..++|++|-.
T Consensus 240 a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 240 ATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEE
Confidence 8888764 3588998854
No 99
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=40.46 E-value=67 Score=36.49 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=55.7
Q ss_pred eEEEEe-cHHhHH-HHHHHHHHHhhcCCCC-eEEEEeCCCCCCCCCCCC-CChhhH-HHHhcCCCcEEEec---CCHHHH
Q 007443 468 KPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDI-TFMSCLPNMIVMAP---SDEDEL 539 (603)
Q Consensus 468 ~P~~~~-~~~Fl~-ra~dQi~~~~a~~~lp-V~~~~~~~G~~g~dG~tH-~~~~di-a~lr~iPnl~V~~P---sd~~e~ 539 (603)
+.+|.+ =..+.. .+++.+.. ++..++| ++++....++. -+|++. +..+|+ ..++.. |+.++.- .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl~~-A~~~~L~nli~i~d~N~~s-i~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEASSL-AAVQQLGNLIVFYDRNQIS-IEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHHHH-HHHTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHHHHH-HHHcCCCcEEEEEECCCcc-cccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 444444 334442 45666655 5789996 88888877763 233332 123443 334444 7887765 488888
Q ss_pred HHHHHHHHhCCCCcEEEEee
Q 007443 540 VDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~ 559 (603)
...++.|....++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 88999886546899999764
No 100
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=32.32 E-value=1.1e+02 Score=33.96 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.6
Q ss_pred CcEEE---ecCCHHHHHHHHHHHHhCCCCcEEEEee
Q 007443 527 NMIVM---APSDEDELVDMVATVASIDDRPVCFRYP 559 (603)
Q Consensus 527 nl~V~---~Psd~~e~~~~l~~a~~~~~~P~~ir~~ 559 (603)
|+..+ ...|..++...++.+.. .++|++|...
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI~v~ 286 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVD-LDGPTILHIV 286 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 44444 44589999999999954 5899988653
No 101
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=24.58 E-value=3.4e+02 Score=31.56 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=38.7
Q ss_pred CCeEEEEe-cHHhH-HHHHHHHHHHhhcCCC-CeEEEEeCCCCCCCCCCCCC---ChhhHHHHhcCCCcEEEe
Q 007443 466 GLKPFCII-PSAFL-QRAYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQC---GAFDITFMSCLPNMIVMA 532 (603)
Q Consensus 466 G~~P~~~~-~~~Fl-~ra~dQi~~~~a~~~l-pV~~~~~~~G~~g~dG~tH~---~~~dia~lr~iPnl~V~~ 532 (603)
..+.++.+ =..+. -.+++.+.+ ++..++ +++++....+.. -+|++-- ...++.-+..-.|+.++.
T Consensus 221 ~~~v~aviGDG~l~eG~~~EAl~~-A~~~~L~nli~Vvn~N~~s-i~~~v~~~~~~~~~l~~~~~~~G~~~~~ 291 (886)
T 2qtc_A 221 KQTVYAFLGDGEMDEPESKGAITI-ATREKLDNLVFVINCNLQR-LDGPVTGNGKIINELEGIFEGAGWNVIK 291 (886)
T ss_dssp TCCEEEEEETGGGGSHHHHTTHHH-HHHTTCTTEEEEEEECSBC-SSSBSCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCccccccchHHHHHH-HHHcCCCcEEEEEECCCcc-cCCCccccccccHHHHHHHHhCCCCEEE
Confidence 45666665 44443 256777765 578887 488888776653 3555543 245554333346887764
No 102
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=22.66 E-value=80 Score=27.66 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=34.2
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHh-cCCCcccCccchHHHHHHHHhhcc
Q 007443 88 PLRLKSLTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVFH 139 (603)
Q Consensus 88 p~~~k~l~~~~L~~la~~iR~~ii~~v~-~~gGHlgsslg~~el~~aL~~vf~ 139 (603)
-.||++|+.+||++-|.++-+.|.+-+. --..|... ++|-++.+..-|+
T Consensus 11 ~~hl~~l~d~el~~rar~LA~kIv~pv~el~~~hTTv---SVERtVlr~mGid 60 (121)
T 3kp1_E 11 RAHLANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTP---SIERSVLLRMGFS 60 (121)
T ss_dssp TGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECH---HHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---HHHHHHHHHhCCC
Confidence 3689999999999988888777766443 22345543 4677777766555
No 103
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=22.33 E-value=1e+02 Score=27.40 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=31.0
Q ss_pred HHhhcCCeEEe-ecCCCCH--HHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 324 LFEELGLYYIG-PVDGHNI--EDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 324 lfea~G~~~ig-~vDGhD~--~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
..++.|..++. ++|..|. +++.+.++.+.+.- ++++|||+..
T Consensus 62 ~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~-G~dVLVnnAg 106 (157)
T 3gxh_A 62 LVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHK-GKDVLVHCLA 106 (157)
T ss_dssp HHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTT-TSCEEEECSB
T ss_pred HHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcC-CCCEEEECCC
Confidence 45667876542 7788888 99999988887632 4599999864
No 104
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=21.20 E-value=2e+02 Score=29.99 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCCCeEEEEEcCCccccchHHHHHHHhhhcCCCEEEEEECCC
Q 007443 193 HGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (603)
Q Consensus 193 ~~G~~is~A~G~A~A~~l~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nlivIlndN~ 253 (603)
+=..++++|.|+|++ |. +.+++.-|.|-.. .+|.|.+++....|+++++-+-.
T Consensus 72 ~E~~a~~~a~Gaa~a----G~-r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 72 DEIASIAAAIGASWA----GA-KAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp CHHHHHHHHHHHHHT----TC-CEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--
T ss_pred CHHHHHHHHHHHHHh----CC-cEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCC
Confidence 334556667777766 43 3566666777653 45677777766789888876643
No 105
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=20.08 E-value=1e+02 Score=27.29 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred HhhcCCe-EEe-ecCCCC--HHHHHHHHHHHHhcCCCCcEEEEEEe
Q 007443 325 FEELGLY-YIG-PVDGHN--IEDLISVLQEVASLGSMGPVLVHVVT 366 (603)
Q Consensus 325 fea~G~~-~ig-~vDGhD--~~~l~~al~~a~~~~~~gP~lI~v~T 366 (603)
+++.|+. |+. |+...+ .+++.+.++...+. ++|+++||+.
T Consensus 68 ~~~~gi~~~~~iPv~~~~~~~~~~~~~~~~l~~~--~~pVlvHC~s 111 (156)
T 2f46_A 68 LEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQA--EYPVLAYCRT 111 (156)
T ss_dssp HGGGTCCEEEECCCCTTTCCHHHHHHHHHHHHTS--CSSEEEECSS
T ss_pred HHHCCCHhheECccCCCCCCHHHHHHHHHHHHhC--CCCEEEECCC
Confidence 4566777 652 343222 33444333333333 7899999975
Done!