Query 007444
Match_columns 603
No_of_seqs 426 out of 2578
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02442 Cob-chelat-sub cobal 100.0 1.8E-77 3.9E-82 679.3 42.3 492 92-602 1-508 (633)
2 PRK13406 bchD magnesium chelat 100.0 2.6E-75 5.6E-80 649.4 33.8 428 100-602 8-443 (584)
3 TIGR02031 BchD-ChlD magnesium 100.0 3.3E-73 7.2E-78 638.0 39.0 444 101-602 1-449 (589)
4 COG1239 ChlI Mg-chelatase subu 100.0 4.5E-67 9.8E-72 546.7 30.3 322 90-413 12-333 (423)
5 CHL00081 chlI Mg-protoporyphyr 100.0 1.8E-56 3.9E-61 469.3 25.5 319 89-409 11-329 (350)
6 TIGR02030 BchI-ChlI magnesium 100.0 2.4E-53 5.3E-58 445.9 27.3 317 92-410 1-317 (337)
7 PRK13407 bchI magnesium chelat 100.0 1.1E-49 2.3E-54 417.5 26.3 313 89-410 2-314 (334)
8 PF01078 Mg_chelatase: Magnesi 100.0 8.8E-33 1.9E-37 268.5 13.6 176 93-296 1-200 (206)
9 PRK09862 putative ATP-dependen 100.0 3.2E-30 7E-35 282.6 21.5 276 92-405 188-495 (506)
10 COG0606 Predicted ATPase with 100.0 2.1E-30 4.6E-35 274.8 16.4 266 91-402 175-485 (490)
11 TIGR00368 Mg chelatase-related 100.0 3.1E-29 6.8E-34 276.0 22.2 265 91-401 188-498 (499)
12 smart00350 MCM minichromosome 100.0 1.1E-28 2.3E-33 274.6 25.7 263 95-403 203-505 (509)
13 COG3829 RocR Transcriptional r 100.0 3E-29 6.6E-34 269.1 15.0 238 89-396 239-491 (560)
14 COG3604 FhlA Transcriptional r 100.0 1.2E-28 2.5E-33 261.3 15.8 234 91-395 219-465 (550)
15 PRK13531 regulatory ATPase Rav 100.0 6.3E-28 1.4E-32 260.3 21.5 259 96-408 21-289 (498)
16 COG2204 AtoC Response regulato 100.0 9.2E-28 2E-32 258.3 16.7 237 91-397 137-386 (464)
17 COG0714 MoxR-like ATPases [Gen 99.9 1.5E-23 3.3E-28 221.6 21.7 266 92-408 21-302 (329)
18 TIGR02974 phageshock_pspF psp 99.9 1.1E-23 2.4E-28 222.2 19.8 228 97-395 1-243 (329)
19 PTZ00111 DNA replication licen 99.9 3.8E-23 8.1E-28 236.2 24.0 264 95-402 450-804 (915)
20 TIGR02902 spore_lonB ATP-depen 99.9 8.4E-23 1.8E-27 228.1 22.2 251 82-400 52-330 (531)
21 PRK15424 propionate catabolism 99.9 8.6E-23 1.9E-27 226.5 19.1 244 91-396 215-479 (538)
22 PF00493 MCM: MCM2/3/5 family 99.9 6.2E-24 1.3E-28 224.3 9.5 263 95-402 24-326 (331)
23 COG1221 PspF Transcriptional r 99.9 3.2E-23 7E-28 219.7 14.8 228 91-385 74-312 (403)
24 TIGR02329 propionate_PrpR prop 99.9 1.1E-22 2.5E-27 225.7 19.2 237 91-397 208-465 (526)
25 PRK11608 pspF phage shock prot 99.9 1.9E-22 4E-27 212.8 19.9 231 94-395 5-250 (326)
26 TIGR01817 nifA Nif-specific re 99.9 3.1E-22 6.8E-27 224.7 20.2 237 89-396 190-439 (534)
27 PRK05022 anaerobic nitric oxid 99.9 7.2E-22 1.6E-26 220.3 19.2 222 93-382 185-420 (509)
28 PRK11388 DNA-binding transcrip 99.9 2.3E-21 5E-26 222.2 19.6 235 91-399 321-568 (638)
29 PRK10820 DNA-binding transcrip 99.9 3.4E-21 7.4E-26 215.1 19.1 235 90-395 199-447 (520)
30 PF05496 RuvB_N: Holliday junc 99.9 7.2E-22 1.6E-26 193.6 11.9 208 83-383 12-230 (233)
31 TIGR02640 gas_vesic_GvpN gas v 99.9 2.7E-20 5.9E-25 190.7 21.1 212 115-407 20-262 (262)
32 COG3283 TyrR Transcriptional r 99.9 7.6E-21 1.6E-25 194.0 15.6 232 90-396 199-443 (511)
33 COG1240 ChlD Mg-chelatase subu 99.9 4.1E-22 8.9E-27 196.7 5.6 102 486-603 18-122 (261)
34 COG1241 MCM2 Predicted ATPase 99.8 4.6E-20 1E-24 206.7 21.6 267 94-405 285-595 (682)
35 COG1222 RPT1 ATP-dependent 26S 99.8 1.7E-20 3.7E-25 192.4 15.4 223 88-406 144-396 (406)
36 TIGR02915 PEP_resp_reg putativ 99.8 4.9E-20 1.1E-24 202.5 20.2 232 93-395 137-382 (445)
37 KOG0734 AAA+-type ATPase conta 99.8 1.1E-20 2.5E-25 200.6 13.8 217 90-404 299-543 (752)
38 PRK10923 glnG nitrogen regulat 99.8 6.3E-20 1.4E-24 203.0 19.4 236 92-398 135-384 (469)
39 PRK15429 formate hydrogenlyase 99.8 4.9E-20 1.1E-24 212.7 18.5 231 91-392 372-616 (686)
40 TIGR00764 lon_rel lon-related 99.8 1.1E-19 2.4E-24 205.5 20.9 285 89-403 12-392 (608)
41 PF00158 Sigma54_activat: Sigm 99.8 1.8E-20 4E-25 179.1 12.1 152 97-292 1-165 (168)
42 COG1223 Predicted ATPase (AAA+ 99.8 7.1E-20 1.5E-24 180.1 15.4 215 89-401 115-354 (368)
43 KOG0480 DNA replication licens 99.8 1.9E-19 4.2E-24 194.9 19.5 263 94-402 344-643 (764)
44 PRK11361 acetoacetate metaboli 99.8 3.5E-19 7.6E-24 196.2 20.1 236 92-398 140-389 (457)
45 COG2255 RuvB Holliday junction 99.8 1.6E-18 3.5E-23 173.1 20.4 228 85-405 16-254 (332)
46 KOG0730 AAA+-type ATPase [Post 99.8 2.8E-19 6E-24 195.4 14.3 221 84-402 423-674 (693)
47 KOG0482 DNA replication licens 99.8 6E-19 1.3E-23 186.4 16.3 264 95-406 342-642 (721)
48 KOG0478 DNA replication licens 99.8 5.5E-18 1.2E-22 185.0 20.8 261 95-402 429-724 (804)
49 COG3284 AcoR Transcriptional a 99.8 4.9E-19 1.1E-23 193.9 12.8 222 98-396 316-551 (606)
50 PRK15115 response regulator Gl 99.8 3.6E-18 7.8E-23 187.6 19.5 231 96-397 135-379 (444)
51 TIGR02903 spore_lon_C ATP-depe 99.8 3.4E-18 7.4E-23 194.0 19.4 249 85-401 144-429 (615)
52 TIGR01818 ntrC nitrogen regula 99.8 4.5E-18 9.8E-23 187.8 19.9 235 94-399 133-381 (463)
53 PRK13765 ATP-dependent proteas 99.8 6E-18 1.3E-22 191.0 20.7 285 87-400 23-398 (637)
54 PRK10365 transcriptional regul 99.8 7.3E-18 1.6E-22 184.8 19.0 231 96-397 140-384 (441)
55 PRK00080 ruvB Holliday junctio 99.8 2.9E-17 6.2E-22 173.7 21.0 222 87-402 17-250 (328)
56 TIGR01650 PD_CobS cobaltochela 99.8 2.1E-17 4.6E-22 171.8 19.5 162 102-310 52-231 (327)
57 PF07726 AAA_3: ATPase family 99.8 2.3E-18 5.1E-23 154.9 10.5 125 118-291 1-131 (131)
58 COG2256 MGS1 ATPase related to 99.8 6.5E-18 1.4E-22 176.0 15.3 221 83-401 12-237 (436)
59 KOG0738 AAA+-type ATPase [Post 99.8 2.9E-18 6.3E-23 177.1 12.1 163 88-311 205-394 (491)
60 KOG0731 AAA+-type ATPase conta 99.8 9.5E-18 2.1E-22 188.4 17.2 220 89-405 305-556 (774)
61 TIGR00635 ruvB Holliday juncti 99.7 7.9E-17 1.7E-21 168.3 20.1 214 93-401 2-228 (305)
62 PRK05342 clpX ATP-dependent pr 99.7 2.1E-17 4.5E-22 178.7 15.0 218 96-376 72-372 (412)
63 TIGR02881 spore_V_K stage V sp 99.7 4.5E-17 9.8E-22 166.8 16.7 214 94-395 5-253 (261)
64 PRK03992 proteasome-activating 99.7 2.4E-17 5.3E-22 178.0 15.4 224 88-407 124-377 (389)
65 KOG0477 DNA replication licens 99.7 2.8E-17 6E-22 177.4 15.5 266 96-405 450-760 (854)
66 PF07728 AAA_5: AAA domain (dy 99.7 6.1E-18 1.3E-22 156.2 8.5 128 118-289 1-139 (139)
67 CHL00195 ycf46 Ycf46; Provisio 99.7 9.5E-17 2.1E-21 176.8 15.8 216 90-404 223-465 (489)
68 TIGR01241 FtsH_fam ATP-depende 99.7 1.4E-16 3E-21 177.6 16.5 217 89-404 49-297 (495)
69 PTZ00454 26S protease regulato 99.7 1.3E-16 2.8E-21 172.1 15.4 221 88-404 138-388 (398)
70 TIGR02880 cbbX_cfxQ probable R 99.7 1.8E-16 4E-21 164.2 15.0 192 96-378 23-249 (284)
71 PTZ00361 26 proteosome regulat 99.7 1.9E-16 4.1E-21 172.1 15.4 224 88-407 176-429 (438)
72 TIGR00382 clpX endopeptidase C 99.7 3E-16 6.4E-21 169.0 16.3 217 96-377 78-379 (413)
73 KOG0479 DNA replication licens 99.7 1.6E-15 3.5E-20 162.9 21.6 262 96-402 302-642 (818)
74 CHL00176 ftsH cell division pr 99.7 2.8E-16 6E-21 178.2 16.4 217 90-405 178-426 (638)
75 KOG0733 Nuclear AAA ATPase (VC 99.7 2.2E-16 4.9E-21 170.6 14.2 158 89-311 505-691 (802)
76 TIGR01242 26Sp45 26S proteasom 99.7 3.5E-16 7.6E-21 167.8 14.2 219 88-402 115-363 (364)
77 COG0465 HflB ATP-dependent Zn 99.7 3.6E-16 7.7E-21 173.1 13.5 221 89-407 144-395 (596)
78 PRK07003 DNA polymerase III su 99.7 1.6E-15 3.4E-20 170.7 18.2 230 85-397 6-239 (830)
79 PRK14956 DNA polymerase III su 99.7 1.7E-15 3.6E-20 164.9 17.8 236 83-401 6-245 (484)
80 PRK13342 recombination factor 99.7 1.6E-15 3.5E-20 165.3 16.9 213 85-402 2-219 (413)
81 CHL00181 cbbX CbbX; Provisiona 99.7 1.4E-15 3.1E-20 157.6 15.4 157 95-310 23-207 (287)
82 PRK14958 DNA polymerase III su 99.7 3.4E-15 7.3E-20 165.9 18.8 233 85-400 6-242 (509)
83 PHA02244 ATPase-like protein 99.6 1.2E-14 2.6E-19 152.8 21.0 133 115-299 118-262 (383)
84 KOG0481 DNA replication licens 99.6 5.5E-15 1.2E-19 156.9 17.4 264 95-403 331-640 (729)
85 PRK14960 DNA polymerase III su 99.6 1.2E-14 2.6E-19 162.2 19.6 231 85-398 5-239 (702)
86 COG1224 TIP49 DNA helicase TIP 99.6 1.6E-14 3.5E-19 148.2 18.7 132 225-404 292-434 (450)
87 KOG2028 ATPase related to the 99.6 2.7E-15 5.8E-20 153.9 12.5 232 83-401 126-367 (554)
88 PRK12323 DNA polymerase III su 99.6 7.1E-15 1.5E-19 163.7 16.7 213 85-376 6-227 (700)
89 PRK14962 DNA polymerase III su 99.6 9.4E-15 2E-19 160.9 17.6 233 86-401 5-241 (472)
90 KOG0739 AAA+-type ATPase [Post 99.6 6.2E-16 1.3E-20 155.0 7.5 164 82-309 120-309 (439)
91 TIGR01243 CDC48 AAA family ATP 99.6 4.4E-15 9.5E-20 172.9 15.9 157 89-310 447-633 (733)
92 KOG0652 26S proteasome regulat 99.6 5.7E-15 1.2E-19 145.7 12.9 221 89-405 165-415 (424)
93 KOG0989 Replication factor C, 99.6 1.9E-14 4.1E-19 145.5 16.7 208 81-379 22-235 (346)
94 KOG0737 AAA+-type ATPase [Post 99.6 8.8E-16 1.9E-20 158.7 6.8 171 91-313 88-275 (386)
95 PRK14964 DNA polymerase III su 99.6 1.9E-14 4E-19 158.2 17.6 236 84-402 2-241 (491)
96 PRK13341 recombination factor 99.6 1E-14 2.3E-19 167.4 16.3 224 83-401 16-246 (725)
97 PRK11034 clpA ATP-dependent Cl 99.6 1.4E-14 3.1E-19 167.1 17.4 208 96-375 459-708 (758)
98 PRK14961 DNA polymerase III su 99.6 3.1E-14 6.7E-19 152.6 18.8 234 84-400 5-242 (363)
99 KOG0727 26S proteasome regulat 99.6 2.1E-14 4.6E-19 141.1 15.7 219 89-404 149-398 (408)
100 PRK14949 DNA polymerase III su 99.6 2.5E-14 5.5E-19 163.9 18.7 216 84-378 5-224 (944)
101 PRK08691 DNA polymerase III su 99.6 2E-14 4.4E-19 161.7 17.5 233 85-400 6-242 (709)
102 COG0464 SpoVK ATPases of the A 99.6 1.4E-14 3E-19 161.6 16.1 218 88-401 235-482 (494)
103 PRK07994 DNA polymerase III su 99.6 2.6E-14 5.6E-19 161.3 18.3 231 84-397 5-239 (647)
104 PRK06645 DNA polymerase III su 99.6 3.2E-14 6.9E-19 157.4 18.4 244 82-405 8-259 (507)
105 smart00763 AAA_PrkA PrkA AAA d 99.6 1.6E-14 3.6E-19 151.8 15.4 216 91-309 45-324 (361)
106 KOG0736 Peroxisome assembly fa 99.6 4.1E-15 9E-20 164.5 10.0 161 88-310 665-855 (953)
107 PRK14957 DNA polymerase III su 99.6 4.7E-14 1E-18 157.0 18.5 234 84-400 5-242 (546)
108 PLN03025 replication factor C 99.6 5.7E-14 1.2E-18 148.0 17.7 217 84-398 2-219 (319)
109 KOG0728 26S proteasome regulat 99.6 1.4E-14 3E-19 142.3 11.5 196 115-405 180-391 (404)
110 TIGR02639 ClpA ATP-dependent C 99.6 3.1E-14 6.6E-19 165.5 16.6 230 89-402 176-429 (731)
111 PRK14952 DNA polymerase III su 99.6 1.1E-13 2.4E-18 155.4 20.3 232 87-398 5-240 (584)
112 PRK07764 DNA polymerase III su 99.6 7E-14 1.5E-18 162.5 19.2 232 85-396 5-240 (824)
113 PRK14951 DNA polymerase III su 99.6 8.7E-14 1.9E-18 156.8 18.4 232 85-399 6-246 (618)
114 PRK14969 DNA polymerase III su 99.5 1.8E-13 4E-18 152.9 19.5 233 85-400 6-242 (527)
115 COG4650 RtcR Sigma54-dependent 99.5 1.5E-14 3.2E-19 144.9 9.5 216 115-398 207-439 (531)
116 PRK09111 DNA polymerase III su 99.5 2E-13 4.3E-18 154.0 19.6 238 81-401 10-256 (598)
117 TIGR03689 pup_AAA proteasome A 99.5 7.1E-14 1.5E-18 154.1 15.4 170 88-312 175-378 (512)
118 KOG0733 Nuclear AAA ATPase (VC 99.5 8.9E-14 1.9E-18 150.8 14.5 160 91-311 186-373 (802)
119 PRK10733 hflB ATP-dependent me 99.5 6.2E-14 1.3E-18 160.5 14.2 217 90-404 147-394 (644)
120 PRK14959 DNA polymerase III su 99.5 3.3E-13 7.3E-18 151.2 19.1 232 84-398 5-240 (624)
121 PRK12402 replication factor C 99.5 5.2E-13 1.1E-17 141.1 19.4 234 84-399 4-246 (337)
122 CHL00206 ycf2 Ycf2; Provisiona 99.5 6.5E-14 1.4E-18 167.9 13.6 148 219-406 1724-1881(2281)
123 TIGR03346 chaperone_ClpB ATP-d 99.5 2.4E-13 5.2E-18 160.4 17.3 209 95-375 565-818 (852)
124 PRK05563 DNA polymerase III su 99.5 6.2E-13 1.3E-17 149.7 19.6 229 87-398 8-240 (559)
125 COG2812 DnaX DNA polymerase II 99.5 1.8E-13 3.9E-18 150.1 13.7 235 85-401 6-243 (515)
126 COG0542 clpA ATP-binding subun 99.5 3.9E-13 8.5E-18 152.6 16.7 212 95-376 491-748 (786)
127 TIGR02639 ClpA ATP-dependent C 99.5 3.8E-13 8.2E-18 156.5 16.8 209 95-375 454-704 (731)
128 TIGR03420 DnaA_homol_Hda DnaA 99.5 5.2E-13 1.1E-17 133.2 15.5 206 91-399 11-225 (226)
129 PRK14965 DNA polymerase III su 99.5 9.6E-13 2.1E-17 148.8 19.4 230 86-398 7-240 (576)
130 PRK08451 DNA polymerase III su 99.5 1.3E-12 2.7E-17 145.0 19.6 231 85-398 4-238 (535)
131 PRK08903 DnaA regulatory inact 99.5 1.7E-12 3.6E-17 130.0 18.7 205 90-400 13-224 (227)
132 PRK10865 protein disaggregatio 99.5 6.4E-13 1.4E-17 156.4 18.1 214 94-376 567-822 (857)
133 PRK05896 DNA polymerase III su 99.5 1E-12 2.2E-17 146.7 18.3 232 84-398 5-240 (605)
134 KOG0729 26S proteasome regulat 99.5 9.6E-14 2.1E-18 137.4 8.6 229 86-410 168-426 (435)
135 PLN00020 ribulose bisphosphate 99.5 1.7E-13 3.7E-18 143.3 10.7 138 116-310 148-309 (413)
136 TIGR00390 hslU ATP-dependent p 99.5 5.9E-13 1.3E-17 142.1 14.6 156 223-400 246-428 (441)
137 PRK05201 hslU ATP-dependent pr 99.5 5.3E-13 1.1E-17 142.5 14.2 156 224-400 249-430 (443)
138 PRK14955 DNA polymerase III su 99.5 1.8E-12 4E-17 140.6 18.7 236 85-399 6-254 (397)
139 PRK14963 DNA polymerase III su 99.5 2E-12 4.4E-17 143.5 19.3 231 87-401 6-239 (504)
140 COG1219 ClpX ATP-dependent pro 99.5 2.7E-13 5.9E-18 137.5 11.1 135 97-276 63-228 (408)
141 PRK11034 clpA ATP-dependent Cl 99.5 7.5E-13 1.6E-17 152.9 15.8 210 91-361 182-407 (758)
142 TIGR03345 VI_ClpV1 type VI sec 99.5 1.1E-12 2.5E-17 153.9 17.3 213 89-364 181-411 (852)
143 TIGR00763 lon ATP-dependent pr 99.4 1.1E-12 2.4E-17 153.4 16.9 203 96-371 321-546 (775)
144 PRK14953 DNA polymerase III su 99.4 3E-12 6.5E-17 141.7 19.2 236 84-399 5-241 (486)
145 KOG1942 DNA helicase, TBP-inte 99.4 4.2E-12 9.1E-17 127.4 17.1 134 225-406 297-442 (456)
146 PRK14950 DNA polymerase III su 99.4 4.1E-12 8.8E-17 144.2 19.4 232 87-397 8-240 (585)
147 PRK06647 DNA polymerase III su 99.4 3.6E-12 7.8E-17 143.2 18.1 232 85-399 6-241 (563)
148 TIGR02928 orc1/cdc6 family rep 99.4 6.4E-12 1.4E-16 134.5 19.1 246 92-402 12-274 (365)
149 PHA02544 44 clamp loader, smal 99.4 6.4E-12 1.4E-16 132.0 18.3 217 83-398 9-227 (316)
150 PRK00440 rfc replication facto 99.4 8E-12 1.7E-16 131.0 18.7 218 84-399 6-223 (319)
151 PRK07133 DNA polymerase III su 99.4 4.2E-12 9.2E-17 144.4 17.5 231 84-398 7-239 (725)
152 KOG0726 26S proteasome regulat 99.4 4E-13 8.6E-18 134.6 7.9 224 88-406 178-430 (440)
153 TIGR01243 CDC48 AAA family ATP 99.4 3E-12 6.4E-17 149.3 15.5 157 89-310 172-357 (733)
154 KOG0740 AAA+-type ATPase [Post 99.4 4.9E-13 1.1E-17 142.9 8.1 164 85-311 143-332 (428)
155 PRK14954 DNA polymerase III su 99.4 8.3E-12 1.8E-16 141.3 18.4 235 86-399 7-254 (620)
156 PRK04195 replication factor C 99.4 1.1E-11 2.3E-16 138.0 17.9 206 84-399 3-222 (482)
157 PRK10787 DNA-binding ATP-depen 99.4 1.3E-11 2.8E-16 143.7 19.3 229 96-398 323-578 (784)
158 PF14532 Sigma54_activ_2: Sigm 99.4 6.2E-13 1.3E-17 123.0 6.7 129 98-299 1-137 (138)
159 PTZ00112 origin recognition co 99.4 6.6E-12 1.4E-16 142.3 16.1 243 92-406 752-1010(1164)
160 TIGR02397 dnaX_nterm DNA polym 99.4 1.8E-11 3.9E-16 130.5 18.8 232 85-399 4-239 (355)
161 PRK06305 DNA polymerase III su 99.4 2.3E-11 5E-16 133.8 19.6 232 85-399 7-243 (451)
162 PRK08084 DNA replication initi 99.4 1.6E-11 3.5E-16 123.9 16.9 205 90-400 17-234 (235)
163 TIGR03345 VI_ClpV1 type VI sec 99.4 1.5E-11 3.2E-16 144.6 18.1 213 95-376 566-824 (852)
164 COG1474 CDC6 Cdc6-related prot 99.4 6.1E-12 1.3E-16 134.4 13.5 237 95-404 17-267 (366)
165 COG0466 Lon ATP-dependent Lon 99.4 1.1E-11 2.4E-16 137.6 15.7 238 96-407 324-586 (782)
166 PRK11331 5-methylcytosine-spec 99.4 6.2E-12 1.3E-16 135.8 13.4 161 94-296 174-356 (459)
167 CHL00095 clpC Clp protease ATP 99.3 1.5E-11 3.1E-16 144.9 17.5 212 95-375 509-774 (821)
168 PRK14971 DNA polymerase III su 99.3 4.3E-11 9.3E-16 136.0 20.2 229 87-398 9-242 (614)
169 KOG0735 AAA+-type ATPase [Post 99.3 9.8E-12 2.1E-16 137.0 13.6 155 91-310 663-846 (952)
170 PRK14948 DNA polymerase III su 99.3 4E-11 8.6E-16 136.3 19.1 174 83-296 4-178 (620)
171 PRK08727 hypothetical protein; 99.3 3.8E-11 8.3E-16 121.0 16.7 207 90-400 14-229 (233)
172 KOG0651 26S proteasome regulat 99.3 2.1E-12 4.7E-17 130.7 7.3 218 89-401 126-372 (388)
173 PRK06893 DNA replication initi 99.3 5.3E-11 1.1E-15 119.7 17.1 207 90-400 11-228 (229)
174 PRK00411 cdc6 cell division co 99.3 8.8E-11 1.9E-15 127.1 20.0 242 92-402 27-282 (394)
175 PF00004 AAA: ATPase family as 99.3 2.7E-12 5.9E-17 116.2 6.4 115 119-296 1-131 (132)
176 PRK14970 DNA polymerase III su 99.3 6.4E-11 1.4E-15 127.2 17.7 225 84-400 6-231 (367)
177 PF06068 TIP49: TIP49 C-termin 99.3 4.2E-11 9.1E-16 125.3 15.0 107 225-379 279-396 (398)
178 PRK06620 hypothetical protein; 99.3 2.2E-10 4.7E-15 114.0 18.5 123 226-399 87-213 (214)
179 KOG0741 AAA+-type ATPase [Post 99.3 2E-12 4.3E-17 138.3 4.0 132 116-311 256-413 (744)
180 CHL00095 clpC Clp protease ATP 99.3 3.1E-11 6.6E-16 142.2 13.9 208 91-362 175-400 (821)
181 KOG0742 AAA+-type ATPase [Post 99.3 1.3E-10 2.8E-15 121.4 16.6 240 90-404 350-614 (630)
182 PRK10865 protein disaggregatio 99.3 4.9E-11 1.1E-15 140.6 14.9 213 89-364 172-402 (857)
183 PF07724 AAA_2: AAA domain (Cd 99.3 1E-11 2.2E-16 119.3 7.2 116 116-277 3-130 (171)
184 KOG2004 Mitochondrial ATP-depe 99.2 5.6E-11 1.2E-15 131.3 13.9 199 96-368 412-634 (906)
185 PRK00149 dnaA chromosomal repl 99.2 6.4E-11 1.4E-15 130.7 14.2 221 90-403 117-350 (450)
186 TIGR03346 chaperone_ClpB ATP-d 99.2 5.3E-11 1.1E-15 140.6 14.0 211 89-362 167-395 (852)
187 cd00009 AAA The AAA+ (ATPases 99.2 6.1E-11 1.3E-15 107.8 10.8 149 98-296 1-150 (151)
188 KOG0745 Putative ATP-dependent 99.2 1.4E-10 3E-15 122.1 14.1 206 117-385 227-511 (564)
189 PRK07940 DNA polymerase III su 99.2 7.7E-11 1.7E-15 127.2 12.1 171 93-308 3-185 (394)
190 TIGR00362 DnaA chromosomal rep 99.2 1.4E-10 3.1E-15 126.2 14.3 221 90-403 105-338 (405)
191 PRK09087 hypothetical protein; 99.2 1.2E-09 2.7E-14 109.5 18.9 131 225-402 88-222 (226)
192 KOG0991 Replication factor C, 99.2 1.3E-10 2.8E-15 113.7 11.0 219 82-398 14-233 (333)
193 COG1067 LonB Predicted ATP-dep 99.2 7.8E-10 1.7E-14 125.0 17.3 266 89-402 98-399 (647)
194 KOG0744 AAA+-type ATPase [Post 99.1 1.5E-10 3.3E-15 117.9 10.3 213 118-404 179-416 (423)
195 KOG2680 DNA helicase TIP49, TB 99.1 1.6E-09 3.5E-14 109.4 17.2 136 224-407 288-434 (454)
196 COG5271 MDN1 AAA ATPase contai 99.1 5.4E-10 1.2E-14 130.6 15.6 210 115-408 887-1113(4600)
197 PRK14086 dnaA chromosomal repl 99.1 1.3E-09 2.8E-14 122.2 17.9 220 90-402 283-515 (617)
198 PRK12422 chromosomal replicati 99.1 7.9E-10 1.7E-14 121.4 15.5 220 89-403 105-344 (445)
199 PF05673 DUF815: Protein of un 99.1 3.3E-09 7.1E-14 106.1 16.4 187 89-370 21-237 (249)
200 PRK14087 dnaA chromosomal repl 99.1 1.4E-09 3E-14 119.8 14.7 223 91-401 111-347 (450)
201 PRK09112 DNA polymerase III su 99.1 3.7E-09 8.1E-14 112.7 17.4 190 89-308 17-209 (351)
202 KOG0732 AAA+-type ATPase conta 99.1 7E-10 1.5E-14 128.8 12.7 162 90-311 260-450 (1080)
203 PRK14088 dnaA chromosomal repl 99.1 1.9E-09 4.2E-14 118.4 15.0 223 89-403 99-333 (440)
204 COG1220 HslU ATP-dependent pro 99.0 1.1E-09 2.3E-14 112.4 11.1 133 224-376 250-401 (444)
205 PRK05642 DNA replication initi 99.0 6E-09 1.3E-13 105.2 15.3 129 226-400 99-233 (234)
206 PRK07471 DNA polymerase III su 99.0 2.8E-09 6E-14 114.2 13.5 192 89-308 13-209 (365)
207 TIGR03015 pepcterm_ATPase puta 99.0 1.1E-08 2.3E-13 104.8 16.4 138 224-401 123-265 (269)
208 PF00308 Bac_DnaA: Bacterial d 99.0 6.4E-09 1.4E-13 103.9 13.4 202 90-383 3-217 (219)
209 KOG0743 AAA+-type ATPase [Post 98.9 7E-09 1.5E-13 110.7 13.0 151 90-308 196-379 (457)
210 KOG0730 AAA+-type ATPase [Post 98.9 7.8E-09 1.7E-13 114.3 13.4 131 116-311 218-363 (693)
211 TIGR00602 rad24 checkpoint pro 98.9 3.6E-08 7.7E-13 112.0 16.3 61 81-141 70-135 (637)
212 COG0542 clpA ATP-binding subun 98.9 1.9E-08 4.1E-13 115.0 13.2 213 90-365 165-395 (786)
213 PF08298 AAA_PrkA: PrkA AAA do 98.8 9.7E-09 2.1E-13 107.6 9.5 211 94-307 59-319 (358)
214 PRK15455 PrkA family serine pr 98.8 1.6E-08 3.4E-13 111.8 10.9 207 94-308 75-342 (644)
215 COG0593 DnaA ATPase involved i 98.8 6.9E-08 1.5E-12 103.7 15.3 222 89-404 81-315 (408)
216 PRK08058 DNA polymerase III su 98.8 5.6E-08 1.2E-12 103.1 13.2 170 94-308 4-178 (329)
217 PRK07399 DNA polymerase III su 98.7 1.1E-06 2.5E-11 92.4 21.4 174 93-311 2-194 (314)
218 KOG1051 Chaperone HSP104 and r 98.7 2E-07 4.4E-12 108.0 16.2 134 95-276 562-710 (898)
219 TIGR00678 holB DNA polymerase 98.7 3E-07 6.6E-12 89.4 14.6 68 224-307 96-163 (188)
220 PRK05564 DNA polymerase III su 98.7 1.8E-07 3.9E-12 98.4 14.0 158 93-307 2-160 (313)
221 COG2607 Predicted ATPase (AAA+ 98.7 5.1E-07 1.1E-11 89.3 15.0 155 89-309 54-236 (287)
222 COG5271 MDN1 AAA ATPase contai 98.7 2.3E-07 4.9E-12 109.5 14.4 157 99-308 1532-1699(4600)
223 smart00382 AAA ATPases associa 98.7 3.5E-08 7.6E-13 88.5 6.0 27 116-142 2-28 (148)
224 KOG0990 Replication factor C, 98.6 4.4E-07 9.6E-12 93.1 12.9 160 79-292 25-185 (360)
225 TIGR02688 conserved hypothetic 98.6 4.6E-07 9.9E-12 97.3 13.1 212 115-408 208-439 (449)
226 PF13177 DNA_pol3_delta2: DNA 98.6 5.4E-07 1.2E-11 85.8 12.1 153 99-292 1-156 (162)
227 COG0470 HolB ATPase involved i 98.6 3.9E-07 8.5E-12 95.6 11.7 163 96-296 2-166 (325)
228 PRK04132 replication factor C 98.5 1.2E-06 2.6E-11 102.2 15.2 121 225-399 631-751 (846)
229 PRK05707 DNA polymerase III su 98.4 2.3E-06 4.9E-11 90.7 13.4 149 117-308 23-174 (328)
230 PRK06964 DNA polymerase III su 98.4 3.2E-06 6.9E-11 89.8 13.6 68 225-308 133-200 (342)
231 PF12774 AAA_6: Hydrolytic ATP 98.4 4.8E-06 1E-10 83.9 14.2 138 116-311 32-179 (231)
232 PF12775 AAA_7: P-loop contain 98.4 3.6E-06 7.7E-11 86.9 13.6 84 224-310 100-191 (272)
233 PRK08769 DNA polymerase III su 98.4 3.8E-06 8.2E-11 88.5 13.2 166 100-307 9-180 (319)
234 PRK06871 DNA polymerase III su 98.4 4.3E-06 9.4E-11 88.2 13.5 164 101-308 8-175 (325)
235 KOG1969 DNA replication checkp 98.3 8.3E-06 1.8E-10 91.5 14.2 168 84-305 260-474 (877)
236 KOG2035 Replication factor C, 98.3 1.2E-05 2.7E-10 81.1 13.9 227 86-380 4-234 (351)
237 PF05621 TniB: Bacterial TniB 98.3 1.1E-05 2.5E-10 83.3 13.5 227 96-398 35-285 (302)
238 PRK06090 DNA polymerase III su 98.2 1.8E-05 3.9E-10 83.3 13.2 163 101-306 9-174 (319)
239 PRK07993 DNA polymerase III su 98.2 1.9E-05 4E-10 84.0 13.3 163 101-306 8-174 (334)
240 PRK08699 DNA polymerase III su 98.2 2.1E-05 4.5E-10 83.3 13.7 165 100-307 6-180 (325)
241 PRK08116 hypothetical protein; 98.2 2.8E-06 6.1E-11 87.5 6.9 54 224-289 178-237 (268)
242 PRK12377 putative replication 98.1 3.7E-06 8.1E-11 85.5 6.1 55 224-290 163-223 (248)
243 KOG0735 AAA+-type ATPase [Post 98.1 2E-05 4.4E-10 88.2 11.9 143 115-310 430-584 (952)
244 PRK06526 transposase; Provisio 98.0 4.1E-06 8.8E-11 85.6 4.7 49 91-140 72-122 (254)
245 PF13654 AAA_32: AAA domain; P 98.0 4.7E-05 1E-09 85.0 13.2 187 190-401 295-505 (509)
246 KOG0736 Peroxisome assembly fa 98.0 8.6E-05 1.9E-09 84.0 14.7 137 119-314 434-578 (953)
247 PF13337 Lon_2: Putative ATP-d 98.0 5.9E-05 1.3E-09 81.8 13.0 213 115-409 207-438 (457)
248 KOG1808 AAA ATPase containing 98.0 6.7E-06 1.4E-10 101.1 5.8 132 116-292 440-581 (1856)
249 TIGR02653 Lon_rel_chp conserve 97.9 8.8E-05 1.9E-09 83.6 12.4 181 192-409 247-447 (675)
250 PRK08181 transposase; Validate 97.9 1.9E-05 4.1E-10 81.3 6.2 49 91-140 79-130 (269)
251 PF13335 Mg_chelatase_2: Magne 97.8 9.5E-05 2.1E-09 64.2 8.8 56 345-401 40-95 (96)
252 KOG0741 AAA+-type ATPase [Post 97.8 4.4E-05 9.5E-10 83.0 8.1 138 116-314 538-688 (744)
253 PF13401 AAA_22: AAA domain; P 97.7 1.1E-05 2.4E-10 73.0 0.9 26 116-141 4-29 (131)
254 PF13173 AAA_14: AAA domain 97.7 8.2E-05 1.8E-09 67.8 6.6 24 117-140 3-26 (128)
255 KOG2227 Pre-initiation complex 97.7 0.00017 3.6E-09 77.8 9.4 118 226-388 258-385 (529)
256 PF00910 RNA_helicase: RNA hel 97.6 0.00012 2.5E-09 64.7 6.5 49 226-275 51-106 (107)
257 PF01695 IstB_IS21: IstB-like 97.6 2.9E-05 6.3E-10 75.1 2.7 26 115-140 46-71 (178)
258 PRK09183 transposase/IS protei 97.6 6.4E-05 1.4E-09 77.1 5.4 49 91-140 76-126 (259)
259 PRK07276 DNA polymerase III su 97.6 0.00078 1.7E-08 70.1 12.8 162 99-308 6-171 (290)
260 PRK07952 DNA replication prote 97.6 9.6E-05 2.1E-09 75.1 5.6 26 116-141 99-124 (244)
261 KOG1514 Origin recognition com 97.6 0.00033 7.1E-09 78.9 10.0 140 225-405 509-658 (767)
262 PRK10536 hypothetical protein; 97.5 0.00034 7.3E-09 71.2 9.1 49 89-139 49-97 (262)
263 PRK06921 hypothetical protein; 97.5 5.1E-05 1.1E-09 78.1 3.2 27 115-141 116-142 (266)
264 PF03266 NTPase_1: NTPase; In 97.5 0.00025 5.4E-09 68.0 6.9 52 224-291 95-150 (168)
265 PRK06835 DNA replication prote 97.5 6.9E-05 1.5E-09 79.4 3.4 26 115-140 182-207 (329)
266 PHA01747 putative ATP-dependen 97.5 0.00035 7.5E-09 73.7 8.3 87 116-260 190-280 (425)
267 PF03215 Rad17: Rad17 cell cyc 97.5 0.006 1.3E-07 68.5 18.7 59 82-141 6-70 (519)
268 COG1484 DnaC DNA replication p 97.5 0.00013 2.8E-09 74.6 4.9 26 115-140 104-129 (254)
269 PF01637 Arch_ATPase: Archaeal 97.4 0.00041 8.9E-09 68.5 8.0 45 97-141 1-45 (234)
270 PF13604 AAA_30: AAA domain; P 97.4 0.00027 5.9E-09 69.4 6.4 26 225-250 94-119 (196)
271 COG1618 Predicted nucleotide k 97.4 0.00052 1.1E-08 64.5 7.7 26 117-142 6-31 (179)
272 COG3267 ExeA Type II secretory 97.4 0.002 4.3E-08 64.9 11.9 131 226-396 133-267 (269)
273 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.00024 5.2E-09 76.2 5.2 27 115-141 61-87 (362)
274 PRK08939 primosomal protein Dn 97.2 0.0002 4.4E-09 75.2 3.6 27 115-141 155-181 (306)
275 PRK05917 DNA polymerase III su 97.2 0.0024 5.2E-08 66.3 10.5 58 224-296 95-152 (290)
276 KOG3347 Predicted nucleotide k 97.2 0.0013 2.8E-08 61.1 7.4 104 116-292 7-113 (176)
277 COG2766 PrkA Putative Ser prot 97.1 0.001 2.2E-08 73.2 7.6 208 94-308 75-343 (649)
278 PF05272 VirE: Virulence-assoc 97.1 0.00062 1.3E-08 67.1 5.5 70 226-296 97-168 (198)
279 PHA02624 large T antigen; Prov 97.1 0.0023 5.1E-08 71.9 10.1 29 114-142 429-457 (647)
280 PF05729 NACHT: NACHT domain 97.0 0.0026 5.7E-08 59.3 8.3 24 118-141 2-25 (166)
281 PRK05818 DNA polymerase III su 97.0 0.0014 3E-08 66.8 6.5 134 117-292 8-142 (261)
282 cd01120 RecA-like_NTPases RecA 96.9 0.0021 4.5E-08 59.5 6.5 23 119-141 2-24 (165)
283 TIGR01448 recD_rel helicase, p 96.9 0.0023 4.9E-08 74.9 8.0 26 116-141 338-363 (720)
284 PRK13695 putative NTPase; Prov 96.8 0.0041 8.9E-08 59.6 8.2 69 224-311 96-168 (174)
285 TIGR01613 primase_Cterm phage/ 96.8 0.029 6.4E-07 58.8 15.2 67 225-291 129-198 (304)
286 TIGR01447 recD exodeoxyribonuc 96.8 0.0033 7.3E-08 71.7 8.5 27 225-251 260-286 (586)
287 PRK10875 recD exonuclease V su 96.7 0.0041 8.9E-08 71.2 8.5 36 226-275 267-302 (615)
288 COG4178 ABC-type uncharacteriz 96.7 0.0013 2.8E-08 74.2 3.6 28 115-142 418-445 (604)
289 PF02562 PhoH: PhoH-like prote 96.6 0.0019 4.1E-08 63.8 4.0 36 98-139 7-42 (205)
290 KOG2170 ATPase of the AAA+ sup 96.6 0.0045 9.8E-08 63.7 6.6 59 218-282 172-230 (344)
291 PF05970 PIF1: PIF1-like helic 96.5 0.0066 1.4E-07 65.4 8.0 40 102-141 8-47 (364)
292 cd01131 PilT Pilus retraction 96.5 0.012 2.6E-07 57.8 9.2 25 117-141 2-26 (198)
293 PRK04296 thymidine kinase; Pro 96.5 0.0089 1.9E-07 58.4 8.0 22 119-140 5-26 (190)
294 PRK07132 DNA polymerase III su 96.4 0.039 8.4E-07 57.8 12.5 66 224-305 90-155 (299)
295 PF13207 AAA_17: AAA domain; P 96.4 0.0022 4.7E-08 57.2 2.6 23 119-141 2-24 (121)
296 PHA02774 E1; Provisional 96.4 0.0098 2.1E-07 66.8 8.1 28 114-141 432-459 (613)
297 PF13191 AAA_16: AAA ATPase do 96.3 0.0039 8.4E-08 59.5 4.3 59 97-156 2-63 (185)
298 PF13671 AAA_33: AAA domain; P 96.2 0.0035 7.5E-08 57.5 3.2 23 119-141 2-24 (143)
299 COG0464 SpoVK ATPases of the A 96.2 0.074 1.6E-06 59.7 14.4 72 226-311 78-162 (494)
300 TIGR01618 phage_P_loop phage n 96.2 0.006 1.3E-07 61.0 4.6 21 117-137 13-33 (220)
301 TIGR02768 TraA_Ti Ti-type conj 96.1 0.011 2.4E-07 69.4 7.5 25 117-141 369-393 (744)
302 PRK08118 topology modulation p 96.1 0.0057 1.2E-07 58.5 3.9 23 118-140 3-25 (167)
303 COG4088 Predicted nucleotide k 96.1 0.016 3.4E-07 56.9 6.8 23 119-141 4-26 (261)
304 PF13148 DUF3987: Protein of u 96.0 0.015 3.2E-07 62.7 7.2 172 225-406 150-364 (378)
305 COG1936 Predicted nucleotide k 96.0 0.011 2.4E-07 56.4 5.3 22 118-140 2-23 (180)
306 cd01129 PulE-GspE PulE/GspE Th 96.0 0.049 1.1E-06 56.1 10.5 49 92-141 57-105 (264)
307 PF00437 T2SE: Type II/IV secr 96.0 0.018 3.8E-07 59.2 7.2 53 90-143 99-154 (270)
308 TIGR01420 pilT_fam pilus retra 95.9 0.039 8.3E-07 59.1 9.9 26 116-141 122-147 (343)
309 KOG1970 Checkpoint RAD17-RFC c 95.9 0.013 2.9E-07 64.6 6.3 64 78-141 65-135 (634)
310 PRK00131 aroK shikimate kinase 95.9 0.0094 2E-07 56.4 4.6 25 116-140 4-28 (175)
311 COG4930 Predicted ATP-dependen 95.9 0.042 9.1E-07 58.6 9.5 168 215-409 269-455 (683)
312 COG0572 Udk Uridine kinase [Nu 95.8 0.049 1.1E-06 54.2 9.3 23 119-141 11-33 (218)
313 PF13238 AAA_18: AAA domain; P 95.8 0.0056 1.2E-07 54.6 2.6 22 119-140 1-22 (129)
314 PF01443 Viral_helicase1: Vira 95.8 0.02 4.2E-07 57.1 6.7 21 119-139 1-21 (234)
315 COG3854 SpoIIIAA ncharacterize 95.8 0.038 8.2E-07 55.1 8.0 26 116-141 137-162 (308)
316 PRK03839 putative kinase; Prov 95.7 0.0098 2.1E-07 57.2 4.0 23 118-140 2-24 (180)
317 PRK14700 recombination factor 95.7 0.047 1E-06 56.7 8.9 106 267-401 8-114 (300)
318 PRK13764 ATPase; Provisional 95.7 0.038 8.3E-07 63.0 8.9 27 115-141 256-282 (602)
319 PF13245 AAA_19: Part of AAA d 95.7 0.012 2.5E-07 48.8 3.6 24 117-140 11-35 (76)
320 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.4E-07 47.8 3.1 22 119-140 2-23 (69)
321 TIGR02858 spore_III_AA stage I 95.6 0.037 8.1E-07 57.1 7.7 26 117-142 112-137 (270)
322 PF09848 DUF2075: Uncharacteri 95.6 0.014 2.9E-07 62.7 4.7 23 118-140 3-25 (352)
323 PRK07261 topology modulation p 95.6 0.014 3E-07 56.0 4.3 23 118-140 2-24 (171)
324 COG1485 Predicted ATPase [Gene 95.6 0.013 2.9E-07 61.6 4.4 27 115-141 64-90 (367)
325 PRK13947 shikimate kinase; Pro 95.5 0.015 3.3E-07 55.2 4.4 24 118-141 3-26 (171)
326 PRK13826 Dtr system oriT relax 95.5 0.023 5E-07 68.7 6.7 54 225-291 469-526 (1102)
327 TIGR00150 HI0065_YjeE ATPase, 95.5 0.041 9E-07 50.6 6.8 28 114-141 20-47 (133)
328 PHA00729 NTP-binding motif con 95.4 0.011 2.3E-07 59.3 3.0 26 115-140 16-41 (226)
329 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.013 2.7E-07 56.4 3.3 23 119-141 2-24 (183)
330 PF13086 AAA_11: AAA domain; P 95.4 0.02 4.3E-07 56.4 4.8 34 104-140 7-41 (236)
331 KOG1051 Chaperone HSP104 and r 95.4 0.03 6.6E-07 65.9 6.8 147 94-299 185-351 (898)
332 PRK06217 hypothetical protein; 95.4 0.019 4.1E-07 55.5 4.4 23 118-140 3-25 (183)
333 PRK04132 replication factor C 95.3 0.0095 2.1E-07 70.2 2.6 50 83-132 7-56 (846)
334 PRK13900 type IV secretion sys 95.3 0.025 5.4E-07 60.2 5.5 29 115-143 159-187 (332)
335 PRK00625 shikimate kinase; Pro 95.3 0.019 4E-07 55.4 4.0 23 118-140 2-24 (173)
336 PRK13949 shikimate kinase; Pro 95.3 0.02 4.3E-07 54.9 4.2 24 117-140 2-25 (169)
337 PLN02318 phosphoribulokinase/u 95.3 0.25 5.4E-06 56.1 13.3 43 99-141 47-90 (656)
338 PF06048 DUF927: Domain of unk 95.2 0.032 6.8E-07 58.2 6.0 79 115-252 192-270 (286)
339 PTZ00301 uridine kinase; Provi 95.2 0.15 3.2E-06 50.7 10.5 22 119-140 6-27 (210)
340 cd00464 SK Shikimate kinase (S 95.2 0.021 4.6E-07 52.9 4.2 24 118-141 1-24 (154)
341 cd02020 CMPK Cytidine monophos 95.2 0.02 4.4E-07 52.5 4.0 22 119-140 2-23 (147)
342 PRK08233 hypothetical protein; 95.2 0.016 3.4E-07 55.4 3.4 24 118-141 5-28 (182)
343 COG0563 Adk Adenylate kinase a 95.2 0.016 3.4E-07 56.1 3.3 24 118-141 2-25 (178)
344 cd01456 vWA_ywmD_type VWA ywmD 95.2 0.016 3.4E-07 57.2 3.3 44 557-601 16-66 (206)
345 PRK06762 hypothetical protein; 95.2 0.016 3.5E-07 54.8 3.3 24 118-141 4-27 (166)
346 TIGR01313 therm_gnt_kin carboh 95.2 0.015 3.3E-07 54.8 3.0 23 119-141 1-23 (163)
347 PRK13889 conjugal transfer rel 95.1 0.029 6.3E-07 67.4 5.9 27 224-250 433-459 (988)
348 PRK08533 flagellar accessory p 95.1 0.069 1.5E-06 53.8 7.9 26 116-141 24-50 (230)
349 KOG2228 Origin recognition com 95.1 0.086 1.9E-06 55.4 8.4 91 227-327 140-234 (408)
350 PRK14532 adenylate kinase; Pro 95.1 0.018 4E-07 55.6 3.4 24 118-141 2-25 (188)
351 cd02021 GntK Gluconate kinase 95.1 0.018 3.9E-07 53.5 3.2 23 119-141 2-24 (150)
352 cd00227 CPT Chloramphenicol (C 95.0 0.018 3.9E-07 55.2 3.2 24 118-141 4-27 (175)
353 TIGR02525 plasmid_TraJ plasmid 95.0 0.093 2E-06 56.7 8.8 27 115-141 148-174 (372)
354 TIGR02538 type_IV_pilB type IV 95.0 0.11 2.4E-06 59.4 9.7 49 92-141 293-341 (564)
355 PF05762 VWA_CoxE: VWA domain 94.9 0.032 6.9E-07 55.9 4.6 48 514-577 25-72 (222)
356 cd01428 ADK Adenylate kinase ( 94.8 0.024 5.2E-07 54.8 3.4 23 119-141 2-24 (194)
357 TIGR01360 aden_kin_iso1 adenyl 94.7 0.024 5.2E-07 54.4 3.2 25 117-141 4-28 (188)
358 PRK14530 adenylate kinase; Pro 94.7 0.026 5.5E-07 56.1 3.3 25 117-141 4-28 (215)
359 PRK06067 flagellar accessory p 94.6 0.065 1.4E-06 53.8 6.2 24 116-139 25-48 (234)
360 COG0703 AroK Shikimate kinase 94.6 0.032 7E-07 53.4 3.7 24 117-140 3-26 (172)
361 PF06309 Torsin: Torsin; Inte 94.6 0.036 7.8E-07 50.4 3.7 46 96-141 26-78 (127)
362 TIGR02322 phosphon_PhnN phosph 94.6 0.029 6.3E-07 53.8 3.4 24 118-141 3-26 (179)
363 PRK05057 aroK shikimate kinase 94.6 0.046 1E-06 52.5 4.7 24 117-140 5-28 (172)
364 PRK13709 conjugal transfer nic 94.6 0.071 1.5E-06 67.5 7.4 38 225-275 1063-1100(1747)
365 cd01130 VirB11-like_ATPase Typ 94.6 0.056 1.2E-06 52.5 5.3 27 116-142 25-51 (186)
366 PF13521 AAA_28: AAA domain; P 94.5 0.029 6.3E-07 53.0 3.2 21 119-139 2-22 (163)
367 PRK14531 adenylate kinase; Pro 94.5 0.03 6.4E-07 54.2 3.3 25 117-141 3-27 (183)
368 COG1102 Cmk Cytidylate kinase 94.5 0.036 7.8E-07 52.4 3.5 23 119-141 3-25 (179)
369 PRK13948 shikimate kinase; Pro 94.4 0.061 1.3E-06 52.3 5.0 26 115-140 9-34 (182)
370 PF13654 AAA_32: AAA domain; P 94.3 0.012 2.6E-07 66.1 0.0 50 92-141 5-55 (509)
371 PRK02496 adk adenylate kinase; 94.3 0.036 7.7E-07 53.5 3.2 24 118-141 3-26 (184)
372 PRK13851 type IV secretion sys 94.2 0.062 1.3E-06 57.5 5.2 28 115-142 161-188 (344)
373 PTZ00088 adenylate kinase 1; P 94.2 0.051 1.1E-06 54.8 4.3 23 118-140 8-30 (229)
374 TIGR02877 spore_yhbH sporulati 94.2 0.038 8.3E-07 58.8 3.5 58 514-577 156-217 (371)
375 PRK03731 aroL shikimate kinase 94.2 0.057 1.2E-06 51.3 4.4 24 117-140 3-26 (171)
376 PRK06547 hypothetical protein; 94.2 0.04 8.6E-07 53.0 3.3 25 117-141 16-40 (172)
377 PRK04040 adenylate kinase; Pro 94.2 0.036 7.8E-07 54.1 3.1 24 118-141 4-27 (188)
378 cd02027 APSK Adenosine 5'-phos 94.1 0.037 8E-07 51.8 2.9 23 119-141 2-24 (149)
379 cd02023 UMPK Uridine monophosp 94.1 0.039 8.5E-07 53.8 3.2 23 119-141 2-24 (198)
380 COG1373 Predicted ATPase (AAA+ 94.1 0.12 2.5E-06 56.5 7.1 24 118-141 39-62 (398)
381 PRK10078 ribose 1,5-bisphospho 94.1 0.039 8.5E-07 53.5 3.0 25 117-141 3-27 (186)
382 TIGR02782 TrbB_P P-type conjug 94.0 0.07 1.5E-06 56.0 5.1 27 115-141 131-157 (299)
383 TIGR01351 adk adenylate kinase 94.0 0.043 9.4E-07 54.2 3.4 23 119-141 2-24 (210)
384 COG1855 ATPase (PilT family) [ 94.0 0.055 1.2E-06 58.6 4.3 38 100-142 252-289 (604)
385 PRK00771 signal recognition pa 94.0 0.054 1.2E-06 59.7 4.4 43 117-160 96-138 (437)
386 PRK12723 flagellar biosynthesi 94.0 0.053 1.2E-06 58.8 4.2 25 117-141 175-199 (388)
387 PRK05541 adenylylsulfate kinas 94.0 0.039 8.5E-07 52.8 2.9 25 117-141 8-32 (176)
388 PRK05703 flhF flagellar biosyn 94.0 0.077 1.7E-06 58.4 5.4 40 117-156 222-262 (424)
389 PRK05480 uridine/cytidine kina 93.9 0.045 9.7E-07 54.0 3.2 25 117-141 7-31 (209)
390 PRK14527 adenylate kinase; Pro 93.9 0.048 1E-06 53.0 3.3 25 117-141 7-31 (191)
391 PF00485 PRK: Phosphoribulokin 93.9 0.039 8.4E-07 53.9 2.7 23 119-141 2-24 (194)
392 PRK00279 adk adenylate kinase; 93.9 0.047 1E-06 54.2 3.3 24 118-141 2-25 (215)
393 PF01583 APS_kinase: Adenylyls 93.9 0.046 9.9E-07 51.8 3.0 24 118-141 4-27 (156)
394 PTZ00202 tuzin; Provisional 93.8 0.11 2.4E-06 56.7 6.1 52 90-141 257-311 (550)
395 PHA02530 pseT polynucleotide k 93.8 0.048 1E-06 56.8 3.3 24 118-141 4-27 (300)
396 PLN02200 adenylate kinase fami 93.8 0.051 1.1E-06 54.9 3.3 24 118-141 45-68 (234)
397 TIGR00235 udk uridine kinase. 93.7 0.05 1.1E-06 53.6 3.2 25 117-141 7-31 (207)
398 COG3839 MalK ABC-type sugar tr 93.7 0.056 1.2E-06 57.4 3.7 26 117-142 30-55 (338)
399 PRK13946 shikimate kinase; Pro 93.7 0.078 1.7E-06 51.4 4.4 25 116-140 10-34 (184)
400 TIGR03574 selen_PSTK L-seryl-t 93.7 0.046 9.9E-07 55.6 2.9 23 119-141 2-24 (249)
401 PRK00300 gmk guanylate kinase; 93.7 0.055 1.2E-06 53.0 3.3 26 116-141 5-30 (205)
402 TIGR03263 guanyl_kin guanylate 93.7 0.05 1.1E-06 52.1 2.9 25 118-142 3-27 (180)
403 PRK10436 hypothetical protein; 93.7 0.35 7.5E-06 53.8 9.9 49 92-141 195-243 (462)
404 PRK14528 adenylate kinase; Pro 93.6 0.057 1.2E-06 52.5 3.3 25 117-141 2-26 (186)
405 PRK13833 conjugal transfer pro 93.6 0.094 2E-06 55.6 5.1 26 115-140 143-168 (323)
406 TIGR02533 type_II_gspE general 93.6 0.35 7.7E-06 54.2 9.9 49 92-141 219-267 (486)
407 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.11 2.4E-06 48.7 5.1 25 117-141 26-50 (157)
408 cd00071 GMPK Guanosine monopho 93.6 0.06 1.3E-06 49.7 3.2 23 119-141 2-24 (137)
409 COG5245 DYN1 Dynein, heavy cha 93.6 0.3 6.6E-06 59.8 9.5 19 115-133 1493-1511(3164)
410 PF13555 AAA_29: P-loop contai 93.6 0.071 1.5E-06 42.4 3.1 24 118-141 25-48 (62)
411 PF08477 Miro: Miro-like prote 93.5 0.063 1.4E-06 47.3 3.2 22 119-140 2-23 (119)
412 PRK13685 hypothetical protein; 93.5 0.057 1.2E-06 57.3 3.4 43 559-602 86-134 (326)
413 PRK14712 conjugal transfer nic 93.5 0.13 2.8E-06 64.5 6.7 26 225-250 931-956 (1623)
414 PF12780 AAA_8: P-loop contain 93.5 0.15 3.3E-06 52.6 6.3 26 115-140 30-55 (268)
415 PRK00889 adenylylsulfate kinas 93.5 0.055 1.2E-06 51.7 2.9 24 118-141 6-29 (175)
416 cd01124 KaiC KaiC is a circadi 93.3 0.065 1.4E-06 51.3 3.2 21 119-139 2-22 (187)
417 PF03029 ATP_bind_1: Conserved 93.3 0.043 9.4E-07 55.6 2.0 35 121-156 1-35 (238)
418 cd02024 NRK1 Nicotinamide ribo 93.3 0.095 2.1E-06 51.2 4.3 28 119-146 2-29 (187)
419 PRK04182 cytidylate kinase; Pr 93.3 0.075 1.6E-06 50.5 3.4 24 118-141 2-25 (180)
420 PRK09825 idnK D-gluconate kina 93.2 0.075 1.6E-06 51.3 3.4 25 117-141 4-28 (176)
421 PLN02165 adenylate isopentenyl 93.2 0.096 2.1E-06 55.5 4.4 30 112-141 39-68 (334)
422 PRK06696 uridine kinase; Valid 93.2 0.064 1.4E-06 53.6 2.9 24 118-141 24-47 (223)
423 PF01745 IPT: Isopentenyl tran 93.2 0.1 2.2E-06 51.7 4.2 23 119-141 4-26 (233)
424 TIGR02173 cyt_kin_arch cytidyl 93.1 0.081 1.8E-06 49.9 3.4 23 119-141 3-25 (171)
425 COG1061 SSL2 DNA or RNA helica 93.1 0.21 4.6E-06 55.3 7.2 42 100-143 41-82 (442)
426 PF01057 Parvo_NS1: Parvovirus 93.1 0.14 3E-06 52.9 5.2 26 116-141 113-138 (271)
427 PRK14526 adenylate kinase; Pro 93.0 0.08 1.7E-06 52.7 3.3 24 118-141 2-25 (211)
428 COG4619 ABC-type uncharacteriz 93.0 0.082 1.8E-06 50.5 3.1 26 117-142 30-55 (223)
429 TIGR01425 SRP54_euk signal rec 92.9 0.26 5.5E-06 54.2 7.3 45 118-163 102-146 (429)
430 cd02028 UMPK_like Uridine mono 92.9 0.076 1.7E-06 51.3 2.9 23 119-141 2-24 (179)
431 cd01918 HprK_C HprK/P, the bif 92.9 0.085 1.8E-06 49.6 3.1 25 115-139 13-37 (149)
432 PRK13975 thymidylate kinase; P 92.9 0.087 1.9E-06 51.1 3.3 24 118-141 4-27 (196)
433 cd03243 ABC_MutS_homologs The 92.8 0.19 4.1E-06 49.3 5.6 23 117-139 30-52 (202)
434 PRK12339 2-phosphoglycerate ki 92.7 0.096 2.1E-06 51.5 3.4 25 117-141 4-28 (197)
435 PLN03210 Resistant to P. syrin 92.7 0.13 2.8E-06 63.8 5.1 50 91-140 180-231 (1153)
436 PF05707 Zot: Zonular occluden 92.7 0.33 7.1E-06 47.4 7.0 60 224-296 79-144 (193)
437 PRK13894 conjugal transfer ATP 92.6 0.17 3.6E-06 53.7 5.2 49 91-140 121-172 (319)
438 PRK06851 hypothetical protein; 92.6 0.12 2.6E-06 55.6 4.1 23 119-141 217-239 (367)
439 COG1116 TauB ABC-type nitrate/ 92.6 0.087 1.9E-06 53.3 2.9 26 117-142 30-55 (248)
440 PRK06761 hypothetical protein; 92.6 0.14 2.9E-06 53.3 4.4 24 118-141 5-28 (282)
441 TIGR02788 VirB11 P-type DNA tr 92.6 0.15 3.2E-06 53.8 4.8 28 115-142 143-170 (308)
442 PRK10867 signal recognition pa 92.6 0.12 2.5E-06 57.0 4.1 44 118-161 102-145 (433)
443 KOG0060 Long-chain acyl-CoA tr 92.5 0.089 1.9E-06 58.8 3.1 28 114-141 459-486 (659)
444 PF00931 NB-ARC: NB-ARC domain 92.5 0.14 3.1E-06 52.5 4.5 26 114-139 17-42 (287)
445 PF13479 AAA_24: AAA domain 92.4 0.073 1.6E-06 52.9 2.1 20 117-136 4-23 (213)
446 PF02367 UPF0079: Uncharacteri 92.4 0.19 4.2E-06 45.6 4.5 27 115-141 14-40 (123)
447 TIGR02524 dot_icm_DotB Dot/Icm 92.3 0.13 2.8E-06 55.4 3.9 26 115-140 133-158 (358)
448 cd02025 PanK Pantothenate kina 92.3 0.099 2.2E-06 52.3 2.9 23 119-141 2-24 (220)
449 PTZ00293 thymidine kinase; Pro 92.3 0.52 1.1E-05 46.8 7.9 22 119-140 7-29 (211)
450 KOG1968 Replication factor C, 92.2 0.72 1.6E-05 54.9 10.2 58 84-141 309-382 (871)
451 PRK07667 uridine kinase; Provi 92.1 0.11 2.4E-06 50.7 2.9 25 117-141 18-42 (193)
452 PRK01184 hypothetical protein; 92.1 0.12 2.5E-06 49.8 3.0 22 118-140 3-24 (184)
453 PF00406 ADK: Adenylate kinase 92.1 0.092 2E-06 48.9 2.2 21 121-141 1-21 (151)
454 PLN02674 adenylate kinase 92.1 0.14 3.1E-06 52.1 3.7 26 116-141 31-56 (244)
455 PF00005 ABC_tran: ABC transpo 92.1 0.092 2E-06 47.7 2.2 26 116-141 11-36 (137)
456 PRK12338 hypothetical protein; 92.1 0.13 2.7E-06 54.4 3.4 24 118-141 6-29 (319)
457 cd03284 ABC_MutS1 MutS1 homolo 92.0 0.34 7.4E-06 48.3 6.3 23 117-139 31-53 (216)
458 cd03115 SRP The signal recogni 92.0 0.12 2.6E-06 49.2 2.9 39 119-158 3-41 (173)
459 PRK14529 adenylate kinase; Pro 91.9 0.13 2.8E-06 51.7 3.2 24 118-141 2-25 (223)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.9 0.13 2.9E-06 50.8 3.3 27 116-142 30-56 (218)
461 cd00820 PEPCK_HprK Phosphoenol 91.8 0.12 2.7E-06 45.7 2.6 21 117-137 16-36 (107)
462 PRK03846 adenylylsulfate kinas 91.8 0.13 2.8E-06 50.4 3.0 26 116-141 24-49 (198)
463 PRK14737 gmk guanylate kinase; 91.8 0.14 3E-06 49.9 3.2 26 117-142 5-30 (186)
464 cd01672 TMPK Thymidine monopho 91.7 0.13 2.8E-06 49.5 2.9 23 119-141 3-25 (200)
465 PRK10646 ADP-binding protein; 91.7 0.45 9.8E-06 44.9 6.4 24 118-141 30-53 (153)
466 cd03281 ABC_MSH5_euk MutS5 hom 91.7 0.27 5.8E-06 48.9 5.2 22 117-138 30-51 (213)
467 KOG2383 Predicted ATPase [Gene 91.7 0.064 1.4E-06 57.4 0.7 27 116-142 114-140 (467)
468 KOG0061 Transporter, ABC super 91.7 0.12 2.6E-06 59.6 3.0 133 119-252 59-221 (613)
469 PF00519 PPV_E1_C: Papillomavi 91.7 0.53 1.1E-05 50.7 7.5 29 113-141 259-287 (432)
470 COG1126 GlnQ ABC-type polar am 91.6 0.12 2.7E-06 51.2 2.6 24 117-140 29-52 (240)
471 PRK08356 hypothetical protein; 91.6 0.14 3.1E-06 49.9 3.1 21 118-138 7-27 (195)
472 cd03282 ABC_MSH4_euk MutS4 hom 91.6 0.21 4.6E-06 49.4 4.3 24 117-140 30-53 (204)
473 TIGR00041 DTMP_kinase thymidyl 91.6 0.14 3E-06 49.7 2.9 24 118-141 5-28 (195)
474 COG1120 FepC ABC-type cobalami 91.6 0.16 3.4E-06 52.0 3.4 27 116-142 28-54 (258)
475 TIGR00455 apsK adenylylsulfate 91.5 0.15 3.1E-06 49.2 2.9 25 117-141 19-43 (184)
476 PRK08154 anaerobic benzoate ca 91.4 0.33 7.2E-06 51.1 5.8 25 116-140 133-157 (309)
477 PRK06581 DNA polymerase III su 91.4 3.1 6.8E-05 42.3 12.3 60 224-298 89-148 (263)
478 PF01926 MMR_HSR1: 50S ribosom 91.4 0.14 3.1E-06 45.1 2.6 20 119-138 2-21 (116)
479 cd03264 ABC_drug_resistance_li 91.4 0.15 3.2E-06 50.3 2.9 25 118-142 27-51 (211)
480 COG1084 Predicted GTPase [Gene 91.4 0.3 6.4E-06 51.3 5.2 33 110-142 162-194 (346)
481 cd03269 ABC_putative_ATPase Th 91.4 0.15 3.2E-06 50.2 2.9 26 117-142 27-52 (210)
482 COG1124 DppF ABC-type dipeptid 91.4 0.13 2.8E-06 51.9 2.4 26 117-142 34-59 (252)
483 COG2074 2-phosphoglycerate kin 91.4 2.2 4.8E-05 43.4 11.0 24 119-142 92-115 (299)
484 PF03205 MobB: Molybdopterin g 91.4 0.11 2.3E-06 48.3 1.8 23 119-141 3-25 (140)
485 cd03258 ABC_MetN_methionine_tr 91.2 0.17 3.8E-06 50.6 3.3 27 116-142 31-57 (233)
486 COG4988 CydD ABC-type transpor 91.2 0.51 1.1E-05 53.0 7.2 28 115-142 346-373 (559)
487 cd03292 ABC_FtsE_transporter F 91.2 0.18 3.9E-06 49.7 3.3 27 116-142 27-53 (214)
488 TIGR03608 L_ocin_972_ABC putat 91.2 0.18 3.8E-06 49.4 3.3 27 116-142 24-50 (206)
489 COG2805 PilT Tfp pilus assembl 91.2 0.42 9E-06 49.7 5.9 27 115-141 124-150 (353)
490 COG0488 Uup ATPase components 91.2 0.2 4.3E-06 56.6 4.0 51 223-294 456-507 (530)
491 PRK14738 gmk guanylate kinase; 91.2 0.16 3.5E-06 50.2 2.9 24 117-140 14-37 (206)
492 TIGR02760 TraI_TIGR conjugativ 91.1 0.32 6.9E-06 63.1 6.2 114 99-272 433-564 (1960)
493 TIGR02315 ABC_phnC phosphonate 91.1 0.18 3.9E-06 50.7 3.3 27 116-142 28-54 (243)
494 TIGR00960 3a0501s02 Type II (G 91.1 0.16 3.5E-06 50.2 2.9 27 116-142 29-55 (216)
495 cd03247 ABCC_cytochrome_bd The 91.1 0.2 4.3E-06 48.0 3.4 27 116-142 28-54 (178)
496 TIGR00868 hCaCC calcium-activa 91.0 0.16 3.5E-06 60.1 3.2 40 562-602 305-347 (863)
497 PF00625 Guanylate_kin: Guanyl 91.0 0.24 5.3E-06 47.7 3.9 27 116-142 2-28 (183)
498 cd03261 ABC_Org_Solvent_Resist 90.9 0.17 3.6E-06 50.8 2.9 26 117-142 27-52 (235)
499 TIGR02673 FtsE cell division A 90.9 0.17 3.7E-06 49.8 2.9 25 117-141 29-53 (214)
500 TIGR03410 urea_trans_UrtE urea 90.9 0.17 3.6E-06 50.6 2.8 27 116-142 26-52 (230)
No 1
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=100.00 E-value=1.8e-77 Score=679.32 Aligned_cols=492 Identities=38% Similarity=0.606 Sum_probs=403.6
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
|||++|+||+.+|++|++++++|..+||||+|++|||||++||+|+.++|++.++.+|.|+|+|+.|..||..|......
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~ 80 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRP 80 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999883211
Q ss_pred cccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcC
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g 251 (603)
. .....||+.+|.++++++|+|++|+++++..|...+++|+|.+|++|||||||||+|++.+|+.|+.+|++|
T Consensus 81 --~-----~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g 153 (633)
T TIGR02442 81 --S-----EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG 153 (633)
T ss_pred --c-----ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence 1 123689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHH
Q 007444 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (603)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (603)
.+.|+|+|.+..+|++|+||+|+||+++.|+++|+|||+++|.+..+.+.+++.+|+.....|..++..|...|..+...
T Consensus 154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 233 (633)
T TIGR02442 154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEE 233 (633)
T ss_pred CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999987788999999998888888888888888887778
Q ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccCCC
Q 007444 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINE 411 (603)
Q Consensus 332 l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~ 411 (603)
+...|..++.+++.|.++++++++|++++..+++.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.+||.||+++.|
T Consensus 234 l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p 313 (633)
T TIGR02442 234 LRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRRRKP 313 (633)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhccCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCC---CCC---C-CCCCCCCCCCCCCCcccCccccccC--C-Cccchhhhc-c--CCCcccccccCCCCcchhhhHH
Q 007444 412 TPPEQ---QNQ---Q-PPPPPPPQNQDSGEEEQNEEEDQED--E-NDEENEQQQ-E--QLPEEFIFDAEGGLVDEKLLFF 478 (603)
Q Consensus 412 ~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~--~~~~e~~~~~~~~~~~~~~l~~ 478 (603)
.+.++ +++ . ++++|+++++++++++++++.++++ + ++++++.+. + +...+.+++++. .+.++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (633)
T TIGR02442 314 FEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGSSTDPAGD-IFRIRVLAP 392 (633)
T ss_pred cccCCCCCccccccccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCcccccCccc-ccCcchhcc
Confidence 32111 110 0 1111111001111111000000000 0 000000000 0 001233566655 455566665
Q ss_pred HHHhhhhcCCCCCcccccccCCCccccccCCCCCCCCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhc
Q 007444 479 AQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR 558 (603)
Q Consensus 479 ~~~~~~~~~~~Gr~~~~~~~~~rGr~v~~~~~~~~~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~ 558 (603)
.... .++++||++. ..++.|||||++..+++...+|||++|||+|||||+.|. + .|.|+++|||.|++++
T Consensus 393 ~~~~--~~~~~g~~~~-~~~~~rGr~~~~~~~~~~~~~i~~~aTlr~aa~~q~~r~------~-~~~i~~~dl~~~~~~~ 462 (633)
T TIGR02442 393 PQAR--ARGASGRRSR-TRSDSRGRYVRARRNRGPPDDLAVDATLRAAAPHQRARP------G-AVAVEPEDLREKIRAG 462 (633)
T ss_pred cccc--ccCCCCCCcc-cccCCCCeeeeccCCCCCCCccCHHHHHHHhcccccccC------C-cceechhhhhHHHhcC
Confidence 4321 2234676663 344699999999988755678999999999999998771 2 6899999999999999
Q ss_pred cCCcEEEEEEeCCchhhhh-hhhHHhHHHHHHhhcccc--ccccccC
Q 007444 559 KAGALVGLMFSVLILQLIL-LPFQEEKGKRMKLIFPQK--PSCIFYS 602 (603)
Q Consensus 559 ~~~~l~ifvvDaS~gSma~-~Rm~~aKgav~~lL~da~--~~~~~~~ 602 (603)
|++.+++||||+| |||+. +||..||+++++||.++| +|+|.++
T Consensus 463 r~~~~vv~vvD~S-gSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI 508 (633)
T TIGR02442 463 RAGNLVIFVVDAS-GSMAARGRMAAAKGAVLSLLRDAYQKRDKVALI 508 (633)
T ss_pred CCCceEEEEEECC-ccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 9999999999999 99977 699999999999999998 5666554
No 2
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=100.00 E-value=2.6e-75 Score=649.39 Aligned_cols=428 Identities=29% Similarity=0.416 Sum_probs=352.1
Q ss_pred cHHHHHHHHHhhhcc-CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 007444 100 QDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (603)
Q Consensus 100 q~~~k~aL~laav~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (603)
|+++|.||++++|+| ++|||||.|++||+||+++|+++.++|.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~------------------------------------ 51 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA------------------------------------ 51 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC------------------------------------
Confidence 899999999999999 9999999999999999999999999972
Q ss_pred ccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeC
Q 007444 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (603)
Q Consensus 179 ~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~ 258 (603)
..||+.+|.++|+++|+|++|+++++..|..+++||+|++||+|||||||+|++++++++.|+++|++|.++|+|+
T Consensus 52 ----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~ 127 (584)
T PRK13406 52 ----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD 127 (584)
T ss_pred ----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEecCCcEEEEEeCCC--CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHH
Q 007444 259 GISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (603)
Q Consensus 259 G~s~~~p~~~~lIattNp~--eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I 336 (603)
|.++++|++|+||||.|+. ++.|+++|+|||+++|++..+...+.+. ......+|
T Consensus 128 G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~-----------------------~~~~~~~I 184 (584)
T PRK13406 128 GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE-----------------------IPIDADDI 184 (584)
T ss_pred CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc-----------------------cCCCHHHH
Confidence 9999999999999997753 4569999999999999999765443220 01224488
Q ss_pred HHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccCCCCCCCC
Q 007444 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQ 416 (603)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~ 416 (603)
..|++.+++|.++++++++++++|..+++.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.|||.||+++.|.++++
T Consensus 185 ~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p~~~~~ 264 (584)
T PRK13406 185 AAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLPAPPQP 264 (584)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999876632211
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccccccCCCccchhhhccCCCcccccccCCCCcchhhhHHHHH--hhhhcCCCCCccc
Q 007444 417 QNQQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQ--AQRRRGKAGRAKN 494 (603)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~--~~~~~~~~Gr~~~ 494 (603)
+ +++|+|++++++++++++++ + + + ++++ ....+++.++++..+.++++++.+... .+.+++++||++.
T Consensus 265 ~--~~~~~~~~~~~~~~~~~~~~----~-~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~g~ 334 (584)
T PRK13406 265 P--EEEPPPPPPPPEDDDDPPED----E-E-E-QDDA-EDRALEEIVLEAVRAALPPDLLARLAAGGARARARSAGGAGA 334 (584)
T ss_pred C--CCCCCCCCCCCCCCcccccc----c-c-c-cccC-CCCCchhhccccccccCChhhhhhcccccccccccCCCCccc
Confidence 1 11111111001110000000 0 0 0 0000 111245778888888888888876431 1122344676666
Q ss_pred ccccCCCccccccCCCCCC-CCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhccCCcEEEEEEeCCch
Q 007444 495 VIFSEDRGRYIKPMLPKGP-IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVGLMFSVLIL 573 (603)
Q Consensus 495 ~~~~~~rGr~v~~~~~~~~-~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~~~~~l~ifvvDaS~g 573 (603)
.++++.|||||+++.++.. +.+|||++|||+|||||+.|++... .+..|.|+++|||.|+|++++++++|||||+| |
T Consensus 335 ~~~~~~rGr~~~~~~~~~~~~~~l~~~aTlraAap~Q~~r~~~~~-~~~~~~i~~~Dlr~k~~~~~~~~~vvfvvD~S-G 412 (584)
T PRK13406 335 AQKGNRRGRPLGSRPGEPRGGARLDLIETLRAAAPWQPLRRRQAG-TARRLLVRPDDFRIRRFKQRSETTTIFVVDAS-G 412 (584)
T ss_pred ccccCCCcccccccCCCCCCCCcccHHHHHHHhhhhhhhcccccC-CCCcceecHHHceehhhhccCCccEEEEEECC-C
Confidence 6677899999999887632 3479999999999999999987421 23469999999999999999999999999999 9
Q ss_pred hhhhhhhHHhHHHHHHhhcccc--ccccccC
Q 007444 574 QLILLPFQEEKGKRMKLIFPQK--PSCIFYS 602 (603)
Q Consensus 574 Sma~~Rm~~aKgav~~lL~da~--~~~~~~~ 602 (603)
||+.+||.++|||+..||.++| +|+|+++
T Consensus 413 SM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI 443 (584)
T PRK13406 413 SAALHRLAEAKGAVELLLAEAYVRRDQVALV 443 (584)
T ss_pred CCcHhHHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 9988999999999999999999 8888765
No 3
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=100.00 E-value=3.3e-73 Score=637.98 Aligned_cols=444 Identities=46% Similarity=0.664 Sum_probs=365.9
Q ss_pred HHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccccc
Q 007444 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (603)
Q Consensus 101 ~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (603)
+.+|+||++++|||.+|||||.|+||||||++|++|+.+++.
T Consensus 1 ~~~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-------------------------------------- 42 (589)
T TIGR02031 1 ERAKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPP-------------------------------------- 42 (589)
T ss_pred ChHHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc--------------------------------------
Confidence 468999999999999999999999999999999999999862
Q ss_pred ccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCe
Q 007444 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (603)
Q Consensus 181 ~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~ 260 (603)
..||+.++.+.+++.|+|++|+++++.+|...+++|+|.+||+|||||||||++++.+|+.|+.+|+++.++++|+|.
T Consensus 43 --~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~ 120 (589)
T TIGR02031 43 --IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGI 120 (589)
T ss_pred --CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCcEEEEEeCCCC--CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHH
Q 007444 261 SFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (603)
Q Consensus 261 s~~~p~~~~lIattNp~e--g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ 338 (603)
+..+|++|.||+|+||++ +.|+++|+|||+++|.+..+++.++|.+|++... ..|...+......+..+|..
T Consensus 121 ~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~------~~~~~~~~~~~~~~~~~i~~ 194 (589)
T TIGR02031 121 SVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER------CNEVFRMNDELELLRGQIEA 194 (589)
T ss_pred ceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH------HhhhhhcchhhHHHHHHHHH
Confidence 999999999999999977 8999999999999999988888899999998754 12334455566788999999
Q ss_pred HHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccCCCCCCCCCC
Q 007444 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQQN 418 (603)
Q Consensus 339 ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~~~ 418 (603)
+++.++.|.++++++++|++++...|+.|+|+.+.++++|+++|+|+|+++|+++||.+|+.+||.||++..|.+++++
T Consensus 195 ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p~~~~~~- 273 (589)
T TIGR02031 195 ARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLPEPEPQP- 273 (589)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCCCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998665321111
Q ss_pred CCCCCCCCCCCCCCCCcccCccccccCCCccchhhhccCCCcccccccCCCCcchhhhHHHHHhhhhcCCCCCccccccc
Q 007444 419 QQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFS 498 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~Gr~~~~~~~ 498 (603)
+++|+ ++++++++++++++++++. ++ +++ ....++|.++++..+.++++++.+.....++ .|+++.++++
T Consensus 274 -~~~~~-~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 343 (589)
T TIGR02031 274 -PPPPP-PPEPPEPEEEPDEPDQTDP--DD--GEE-TDQIPEELMFDAVEADLPDNILATLQTVQRR---RGRAGGEQKS 343 (589)
T ss_pred -CCCCC-CCCCCCCcccCcCcccCCC--Cc--ccc-ccCCccccccCccccccChhhhhccchhccc---cCCCCccccc
Confidence 11111 1111111101000000000 00 000 1123567789988888888888765432221 1333444556
Q ss_pred CCCccccccCCCC-CCCCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhccCCcEEEEEEeCCchhhhh
Q 007444 499 EDRGRYIKPMLPK-GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVGLMFSVLILQLIL 577 (603)
Q Consensus 499 ~~rGr~v~~~~~~-~~~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~~~~~l~ifvvDaS~gSma~ 577 (603)
..|||||++..++ +...||||+||||||||||+.|++........+.++++|||.|+++++++.+++||||+| |||+.
T Consensus 344 ~~rGr~~~~~~~~~~~~~~i~~~aTlraAap~q~~r~~~~~~~~~~~~~~~~dl~~k~~~~~~~~~v~fvvD~S-GSM~~ 422 (589)
T TIGR02031 344 NHRGRPLRSRLGKPGSGARVDLVATLRAAAPWQRLRREENPAGTRGLIVEASDIRIKRYRRKSGRLLIFVVDAS-GSAAV 422 (589)
T ss_pred CCCcccccccCCCCCCCCcccHHHHHHHhCcccccccccCCCcccceEeecccceEEeeccccCceEEEEEECC-CCCCh
Confidence 7999999999876 445689999999999999999987432223479999999999999999999999999999 99988
Q ss_pred hhhHHhHHHHHHhhcccc--ccccccC
Q 007444 578 LPFQEEKGKRMKLIFPQK--PSCIFYS 602 (603)
Q Consensus 578 ~Rm~~aKgav~~lL~da~--~~~~~~~ 602 (603)
+||..||+++..||.++| +|+|+++
T Consensus 423 ~rl~~aK~av~~Ll~~~~~~~D~v~Li 449 (589)
T TIGR02031 423 ARMSEAKGAVELLLGEAYVHRDQVSLI 449 (589)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEE
Confidence 999999999999999998 5777664
No 4
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-67 Score=546.75 Aligned_cols=322 Identities=42% Similarity=0.692 Sum_probs=310.1
Q ss_pred CCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
..|||++|+|||.+|.+|.+++++|.++|+||.|++||||||++|+|+.+||+++++.||.|||||.+|.+||+.|.++.
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hccchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
. +. ..+....+.++|+.+|.++++|+|+|++|+++++..|...|+||+|++||+|||||||+|+|++++|+.||++++
T Consensus 92 ~-e~-~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aa 169 (423)
T COG1239 92 D-EL-EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAA 169 (423)
T ss_pred c-cc-ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHH
Confidence 2 22 555566678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhh
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~ 329 (603)
+|++.|+|+|.+++||++|+|||||||++|+|+++|+|||++.|.+..|.+.+.|++|+++++.|..+|+.|.+.|...+
T Consensus 170 eG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~ 249 (423)
T COG1239 170 EGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQ 249 (423)
T ss_pred hCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccC
Q 007444 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (603)
Q Consensus 330 ~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (603)
..++.+|..|+.+++.|.+++++..++++.|.++++.++|+++.+.++++++|+|.|+.+|+.+|+++|+.+++.||.+.
T Consensus 250 ~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 250 RALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 007444 410 NETP 413 (603)
Q Consensus 410 ~~~~ 413 (603)
.+..
T Consensus 330 ~~~~ 333 (423)
T COG1239 330 KPFI 333 (423)
T ss_pred cccc
Confidence 6643
No 5
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=1.8e-56 Score=469.33 Aligned_cols=319 Identities=38% Similarity=0.609 Sum_probs=298.0
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
+..|||++||||+++|+||++++++|..+||||.|++|||||++||+++.+++...++.+|+|||+|.+|+.||+.|+..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
...+ ..........||+.+|.++++++|+|++|+++++..|..++++|+|.+|++|+|||||||++++.+|+.|+++|
T Consensus 91 ~~~~--~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam 168 (350)
T CHL00081 91 IQNG--ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA 168 (350)
T ss_pred hccc--ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence 4211 11112234789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (603)
+++.++++|+|.+..+|++|++|+|+||+++.|+++|+|||+++|.+.+|.+.+.+.+|+++...|..++..|...|...
T Consensus 169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T CHL00081 169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEES 248 (350)
T ss_pred HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999988778999999999888877788888888777
Q ss_pred hHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcc
Q 007444 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 329 ~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (603)
+..+...|..+++.++.|.+++++++++++++...++.|+|+.+.++++|+++|+++||++|+++||..++.+||.||.+
T Consensus 249 ~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 249 QEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred cccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007444 409 I 409 (603)
Q Consensus 409 ~ 409 (603)
.
T Consensus 329 ~ 329 (350)
T CHL00081 329 K 329 (350)
T ss_pred C
Confidence 4
No 6
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=2.4e-53 Score=445.86 Aligned_cols=317 Identities=38% Similarity=0.615 Sum_probs=294.4
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
|||+.||||+++|++|++++++|+.+||||.|++||||||++|+++.+++....+.+|.+||+|..|..||..|+.+.+.
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred CCccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875322
Q ss_pred cccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcC
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g 251 (603)
. ..+.......||+.+|.++++++|+|++|+++++.+|..++++|+|.+|++|+|||||||+|++.+|+.|+++|+++
T Consensus 81 ~--~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 81 Q--EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred c--cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 1 01112234689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHH
Q 007444 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (603)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (603)
.++++++|.+..+|++|++|+|+||+++.|+++|+|||++++.+..|.+.+++.+|++....+..++..|...+..++..
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~ 238 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEA 238 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999988778999999998877766677777778888888
Q ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccCC
Q 007444 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIIN 410 (603)
Q Consensus 332 l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~ 410 (603)
+...|..+++.++.|.+++++++++++++...++.|+|+.+.++++|+++|+++||++|+++||+.++.+||.||.+..
T Consensus 239 ~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~~ 317 (337)
T TIGR02030 239 LQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRKD 317 (337)
T ss_pred CHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999999999999999999999899999999999999999999999999999999999999999743
No 7
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=1.1e-49 Score=417.48 Aligned_cols=313 Identities=36% Similarity=0.576 Sum_probs=283.2
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
+.+++|++|+||++++++|++++++++.+||||.|+||||||++||+++.++|.+..+++|.++|.+ -.||..+...
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~---~~~~~~~~~~ 78 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR---PEDCPEWAHV 78 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc---ccCCcccccc
Confidence 4579999999999999999999999988999999999999999999999999999999999999874 2333222111
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
.. ........||+.+|.++++++|+|++|+++++.+|...+++|++.+|++|+|||||||++++.+|+.|+++|
T Consensus 79 ~~------~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m 152 (334)
T PRK13407 79 SS------TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA 152 (334)
T ss_pred cC------CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH
Confidence 00 011123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (603)
+++.++++++|.++.+|++|++|+|+||.++.++++|+|||.++|.+..|.+.++|.+|+.+...+..++..+...|..+
T Consensus 153 ee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 232 (334)
T PRK13407 153 QSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAE 232 (334)
T ss_pred HcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999988888999999998877766677777777777
Q ss_pred hHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcc
Q 007444 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 329 ~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (603)
.....++|..+++.++.|.+++++++++++++...+..|+|+.+.++++|+++|+++||++|+++||+.++.+++.||.+
T Consensus 233 ~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 233 DMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred ccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 007444 409 IN 410 (603)
Q Consensus 409 ~~ 410 (603)
..
T Consensus 313 ~~ 314 (334)
T PRK13407 313 RD 314 (334)
T ss_pred CC
Confidence 43
No 8
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=100.00 E-value=8.8e-33 Score=268.46 Aligned_cols=176 Identities=33% Similarity=0.483 Sum_probs=117.3
Q ss_pred CCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccc
Q 007444 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~ 172 (603)
+|++|+||+.+|+||++|++ +.+||||+||||||||++|+.+..+||+++..+.+.+.. + ++
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~---------------i-~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSK---------------I-YS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS-----------------S--T
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcc---------------c-cc
Confidence 58999999999999999999 568999999999999999999999999887644222111 0 11
Q ss_pred ccc--cccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHc
Q 007444 173 TAG--NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTE 250 (603)
Q Consensus 173 ~~~--~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~ 250 (603)
..+ .........||+.++.+++...|+|+ ...++||.++.||+|||||||++.+++.+++.|++.|++
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGg----------g~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGG----------GRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHEE----------GGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhCC----------CcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 111 11223457899999999999999994 458899999999999999999999999999999999999
Q ss_pred CceeEeeCCeeeEecCCcEEEEEeCCCC----------------------CCccHHHHhhhccccccc
Q 007444 251 GVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSAD 296 (603)
Q Consensus 251 g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------g~L~~~LldRf~l~v~v~ 296 (603)
|.++|+|.|.++++|++|++|+||||++ ..++.+|+|||+++|.+.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999965 247789999999999886
No 9
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.97 E-value=3.2e-30 Score=282.62 Aligned_cols=276 Identities=21% Similarity=0.295 Sum_probs=209.8
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
.+|.++.|+..+++++.+++. +..+++|.|++|+|||++++.|+.++++... ++..+.. .+ +
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllpp~~g-------------~e~le~~--~i-~ 249 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-------------EEALESA--AI-L 249 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-------------cEEEecc--hh-h
Confidence 478999999999999987665 5677999999999999999999999985421 1111110 00 1
Q ss_pred cccccc--cccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 172 DTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 172 ~~~~~~--~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
+..+.. ...+...||+..|.+++...|+| |....+||.+..||+|+|||||++.+++.+++.|++.|+
T Consensus 250 s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G----------Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE 319 (506)
T PRK09862 250 SLVNAESVQKQWRQRPFRSPHHSASLTAMVG----------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIE 319 (506)
T ss_pred hhhccccccCCcCCCCccCCCccchHHHHhC----------CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHH
Confidence 111111 11124689999999999999999 455688999999999999999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCCC--------------------CCccHHHHhhhcccccccCCCCHH-------
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPEE--------------------GVVREHLLDRIAINLSADLPMTFE------- 302 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~e--------------------g~L~~~LldRf~l~v~v~~p~~~e------- 302 (603)
++.++|.|.|.+..+|++|.+|+||||++ +.|+.+|+|||+++|.+..+ +.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~-~~~~l~~~~~ 398 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP-PPGILSKTVV 398 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC-CHHHHhcccC
Confidence 99999999999999999999999999975 24788999999999999854 222
Q ss_pred ---HHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 303 ---DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 303 ---~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
...+|.+++....+. +.+.+..+...+ ..+...+.+.+++++.+.+.+.....++ |+|+...++++||
T Consensus 399 ~~ess~~i~~rV~~ar~~-------q~~r~~~~n~~l-~~~~l~~~~~l~~~~~~~l~~~~~~~~l-S~Ra~~rlLrvAR 469 (506)
T PRK09862 399 PGESSATVKQRVMAARER-------QFKRQNKLNAWL-DSPEIRQFCKLESEDARWLEETLIHLGL-SIRAWQRLLKVAR 469 (506)
T ss_pred CCCChHHHHHHHhhHHHH-------HHHHHHHHhccc-CHHHHHHHhCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 223333333222110 000001111111 1334445578999998888888888888 7999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 380 CLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
++|+|+|+++|+.+||.+|+.|.-..
T Consensus 470 TiADL~g~~~V~~~hv~eAl~yR~~~ 495 (506)
T PRK09862 470 TIADIDQSDIITRQHLQEAVSYRAID 495 (506)
T ss_pred HHHHHcCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999997443
No 10
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=274.82 Aligned_cols=266 Identities=27% Similarity=0.335 Sum_probs=203.8
Q ss_pred CCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
..+|.||+||+.+|+||.+++. +.+++|++||||||||++|+.+..+||++..-+ ..+.. .|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E-------------~lE~s--~I- 236 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPE-------------ALEVS--AI- 236 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHH-------------HHHHH--HH-
Confidence 4689999999999999999988 788899999999999999999999999874211 11100 00
Q ss_pred ccccccc---cccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHH
Q 007444 171 YDTAGNL---KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (603)
Q Consensus 171 ~~~~~~~---~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~ 247 (603)
++..+.. ...+...||+..+.+++...|+|+ ....+||.+..||+|||||||+-.+.+.+++.|.+.
T Consensus 237 ~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGG----------G~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~P 306 (490)
T COG0606 237 HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGG----------GGVPRPGEISLAHNGVLFLDELPEFKRSILEALREP 306 (490)
T ss_pred hhhcccccccCccceeCCccCCCccchHHHHhCC----------CCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCc
Confidence 0111110 113457899999999999999994 478899999999999999999999999999999999
Q ss_pred HHcCceeEeeCCeeeEecCCcEEEEEeCCCC----------------------CCccHHHHhhhcccccccCCCCHHHHH
Q 007444 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSADLPMTFEDRV 305 (603)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------g~L~~~LldRf~l~v~v~~p~~~e~r~ 305 (603)
|++|+++|.|.+..+.+|++|++|++|||++ +.++.+|+|||++.|++..+ +..++.
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~-~~~e~~ 385 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRL-SAGELI 385 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCC-CHHHhh
Confidence 9999999999999999999999999999964 24778999999999998743 222111
Q ss_pred HHHHHHHHHHhhhHHHhhhhhH-hhHHHHHHHHHHHHhc-------------------cccCCCHHHHHHHHHHHHcCCC
Q 007444 306 AAVGIATQFQERSNEVFKMVEE-ETDLAKTQIILAREYL-------------------KDVAIGREQLKYLVMEALRGGC 365 (603)
Q Consensus 306 eI~~~~~~f~~~~~~~~~~~~~-~~~~l~~~I~~ar~~l-------------------~~v~is~~~l~~L~~~a~~~~v 365 (603)
.- .... ....++.++..||+.. +.+.++.+..++|-.....+++
T Consensus 386 ~~----------------~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~l 449 (490)
T COG0606 386 RQ----------------VPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGL 449 (490)
T ss_pred cC----------------CCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcch
Confidence 00 0000 1233344444443321 1234455554445455556666
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 366 QGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 366 ~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
|.|+.-.++++|+++|.|+|.+.|...|+.+|+.|.
T Consensus 450 -S~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 450 -SARAYHRILKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred -hHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 789999999999999999999999999999999986
No 11
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.97 E-value=3.1e-29 Score=276.04 Aligned_cols=265 Identities=26% Similarity=0.372 Sum_probs=206.0
Q ss_pred CCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
.++|++|+||+.+++++.+++. +..+++|.||||||||++++.++.++++... +.+++... +
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~-------------~~~le~~~--i- 249 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTN-------------EEAIETAR--I- 249 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCC-------------cEEEeccc--c-
Confidence 4589999999999999988776 5578999999999999999999999986421 11111000 0
Q ss_pred cccccccc--ccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 171 YDTAGNLK--TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 171 ~~~~~~~~--~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
++..+... ......||+.++...+...++| |....+||.+..||+|+|||||++.+++.+++.|++.|
T Consensus 250 ~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~g----------gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~L 319 (499)
T TIGR00368 250 WSLVGKLIDRKQIKQRPFRSPHHSASKPALVG----------GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPI 319 (499)
T ss_pred ccchhhhccccccccCCccccccccchhhhhC----------CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHH
Confidence 00000000 0124689999999999999999 44567899999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCC----C------------------CccHHHHhhhcccccccCCCCHHHHHH
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----G------------------VVREHLLDRIAINLSADLPMTFEDRVA 306 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g------------------~L~~~LldRf~l~v~v~~p~~~e~r~e 306 (603)
+++.+.+.|.|....+|++|.+|++|||++ + .++.+|+|||++++.+.. ...++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~-~~~~~--- 395 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPL-LPPEK--- 395 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcC-CCHHH---
Confidence 999999999999999999999999999964 1 488999999999999873 33331
Q ss_pred HHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhc-----c-----------------ccCCCHHHHHHHHHHHHcCC
Q 007444 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL-----K-----------------DVAIGREQLKYLVMEALRGG 364 (603)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l-----~-----------------~v~is~~~l~~L~~~a~~~~ 364 (603)
+.. . .-.+....++++|..||+.+ . ...++++..+.|.+.....+
T Consensus 396 l~~-------~------~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~ 462 (499)
T TIGR00368 396 LLS-------T------GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLG 462 (499)
T ss_pred Hhc-------c------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 110 0 01133456667776666554 1 13457777777777777777
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 365 CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 365 v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
. |+|....++|+|+++|+|+|++.|+.+||.+|+.|
T Consensus 463 l-S~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 463 L-SSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred C-CchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 5 99999999999999999999999999999999986
No 12
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.96 E-value=1.1e-28 Score=274.60 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=205.4
Q ss_pred CcccccHHHHHHHHHhhhccC------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
..|.|++.+|++|+++++... .-||||.|+||||||++||++++++++..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~------------------ 264 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV------------------ 264 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce------------------
Confidence 568999999999988877421 11799999999999999999999986421
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
|+.. .+.+...+.+.. .+...+|...+++|.+..|++|+|||||++++++..+.
T Consensus 265 -----------------------~~~~-~~~~~~~l~~~~--~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 265 -----------------------YTTG-KGSSAVGLTAAV--TRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred -----------------------EcCC-CCCCcCCccccc--eEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 1110 000111111110 01112366678899999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
.|+.+|+++.+.+.+.|....+|++|.||||+||.+| .|+++|+|||++++.+..+++.+...+|.+.
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999887 6899999999998777667899999999987
Q ss_pred HHHHHh--hhHHHh-hhhhHhhHHHHHHHHHHHH-hccccCCCHHHHHHHHHHHHcCC------------CCchhHHHHH
Q 007444 311 ATQFQE--RSNEVF-KMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGG------------CQGHRAELYA 374 (603)
Q Consensus 311 ~~~f~~--~~~~~~-~~~~~~~~~l~~~I~~ar~-~l~~v~is~~~l~~L~~~a~~~~------------v~s~Ra~i~l 374 (603)
.+.+.. .+.... ....-..+.++..|..||. ..+ .+++++.++|.+++.... ..+.|+++.+
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P--~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sl 476 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP--KLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESI 476 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHH
Confidence 765432 111010 1123446789999999998 445 489999999998765432 2378999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHc
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELVI 403 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (603)
+|+|+|+|+++++++|+++|+.+|++++.
T Consensus 477 iRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 477 IRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 13
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=3e-29 Score=269.14 Aligned_cols=238 Identities=27% Similarity=0.405 Sum_probs=200.6
Q ss_pred CCCCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
...|+|++|+|.++.+..+ +...+++....|||.|++||||.++|++||+..++
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R------------------------ 294 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR------------------------ 294 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc------------------------
Confidence 4569999999999766655 23345667789999999999999999999999874
Q ss_pred ccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccc-cccchhcccCceEEecccccCCHHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVF-QPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~-~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.+.|||.++|+ +.|++|||+ +++.++|+..- ++|+|..||+|+||||||+.||.++
T Consensus 295 ---------------~~~PFIaiNCaAiPe~LlESELFGy---e~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~L 356 (560)
T COG3829 295 ---------------ANGPFIAINCAAIPETLLESELFGY---EKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPL 356 (560)
T ss_pred ---------------cCCCeEEEecccCCHHHHHHHHhCc---CCccccccccCCCCcceeeccCCeEEehhhccCCHHH
Confidence 47899997665 457799998 78999999876 9999999999999999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
|..||++++++. |+|-|.+...|.++.+|||||.+ +|.||++|++|+++. .+..||.+++..||..+...|
T Consensus 357 QaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~-~i~iPPLReR~eDI~~L~~~F 433 (560)
T COG3829 357 QAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI-PITIPPLRERKEDIPLLAEYF 433 (560)
T ss_pred HHHHHHHHhhce--EEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee-eecCCCcccCcchHHHHHHHH
Confidence 999999999999 89999999999999999999973 689999999999998 888899999999999998888
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVA-IGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~-is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~e 393 (603)
.+.. .+...+.+. ++++++..|..|.|++|+ |.+.++++-+-- .......|+.+
T Consensus 434 l~k~--------------------s~~~~~~v~~ls~~a~~~L~~y~WPGNV---RELeNviER~v~--~~~~~~~I~~~ 488 (560)
T COG3829 434 LDKF--------------------SRRYGRNVKGLSPDALALLLRYDWPGNV---RELENVIERAVN--LVESDGLIDAD 488 (560)
T ss_pred HHHH--------------------HHHcCCCcccCCHHHHHHHHhCCCCchH---HHHHHHHHHHHh--ccCCcceeehh
Confidence 5432 244556676 999999999999999998 888888754442 23444456666
Q ss_pred HHH
Q 007444 394 DLK 396 (603)
Q Consensus 394 Dv~ 396 (603)
|+-
T Consensus 489 ~lp 491 (560)
T COG3829 489 DLP 491 (560)
T ss_pred hcc
Confidence 653
No 14
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-28 Score=261.26 Aligned_cols=234 Identities=27% Similarity=0.359 Sum_probs=202.6
Q ss_pred CCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
...+..|||++.+++.+ .+..|+++...|||.|++||||..+||+||++.++
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------------------------- 272 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------------------------- 272 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc--------------------------
Confidence 46688999999999988 56678888899999999999999999999999875
Q ss_pred ccccccccccccccCCCeEEcC-----CCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIP-----LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~-----~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.+.|||.++ .+..|++|||+ +|+.++|+...++|.|..|+||+||+|||..||.++|..
T Consensus 273 -------------~~kPfV~~NCAAlPesLlESELFGH---eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaK 336 (550)
T COG3604 273 -------------RDKPFVKLNCAALPESLLESELFGH---EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAK 336 (550)
T ss_pred -------------cCCCceeeeccccchHHHHHHHhcc---cccccccchhccCcceeecCCCeEechhhccCCHHHHHH
Confidence 367787754 45667899999 699999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
||.++++|. |+|.|...++..++.|||+||.+ .|+|+++|++|++.. .+..||.+++..||.-+..+|.+.
T Consensus 337 LLRvLQegE--ieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~-Pl~lPPLRER~~DIplLA~~Fle~ 413 (550)
T COG3604 337 LLRVLQEGE--IERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVF-PLELPPLRERPEDIPLLAGYFLEK 413 (550)
T ss_pred HHHHHhhcc--eeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhccccc-ccCCCCcccCCccHHHHHHHHHHH
Confidence 999999999 99999999999999999999985 589999999999988 888899999999999998888543
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
.. .+.....+.++.++++.|.+|.|++|+ |.+.++++.|..+| |+ .++.+|+
T Consensus 414 ~~-------------------~~~gr~~l~ls~~Al~~L~~y~wPGNV---RELen~veRavlla---~~-~~~~~d~ 465 (550)
T COG3604 414 FR-------------------RRLGRAILSLSAEALELLSSYEWPGNV---RELENVVERAVLLA---GR-LTRRGDL 465 (550)
T ss_pred HH-------------------HhcCCcccccCHHHHHHHHcCCCCCcH---HHHHHHHHHHHHHh---cc-cCCCcce
Confidence 21 122233678999999999999999998 99999998877766 22 3555554
No 15
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.96 E-value=6.3e-28 Score=260.33 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=199.7
Q ss_pred cccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccc
Q 007444 96 AVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~ 175 (603)
.|+|++++++.++.++. ..++|||.||||||||++|++|+..+..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~--------------------------------- 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN--------------------------------- 65 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcc---------------------------------
Confidence 48999999999988877 6789999999999999999999997642
Q ss_pred cccccccCCCeEEcCCC-CccccccccccchhccccCcc-cccccchhcccCceEEecccccCCHHHHHHHHHHHHcCce
Q 007444 176 NLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (603)
Q Consensus 176 ~~~~~~~~~pfv~l~~~-~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~ 253 (603)
..+|..+... .+...++|.+++.....+|.. .+.+|.+..++ +||+|||+++++.+|+.||.+|+++.+
T Consensus 66 -------~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~ 136 (498)
T PRK13531 66 -------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRF 136 (498)
T ss_pred -------cCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeE
Confidence 1234433322 245689998766554445665 46788887776 999999999999999999999999985
Q ss_pred eEeeCCeeeEecCCcEEEEEeCC--CCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHH
Q 007444 254 IVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (603)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp--~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (603)
..+|.+...|.+|++++| |+ ++|.++++++|||-+.+.+++|.+.++..+++.....-...+. ......
T Consensus 137 --t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~------~~~~vi 207 (498)
T PRK13531 137 --RNGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPV------PASLQI 207 (498)
T ss_pred --ecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCC------cccCCC
Confidence 457888999998888888 75 3478899999999888888865445665667654211000000 000011
Q ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHc----C--CCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 332 AKTQIILAREYLKDVAIGREQLKYLVMEALR----G--GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 332 l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~----~--~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
-.+.+...++....|.+++.+.++++++... . ...|.|+.+.+++++++.|.++||++|+++||. .+..||+|
T Consensus 208 s~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 208 TDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred CHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 2345666777788999999999999998752 1 226999999999999999999999999999999 99999999
Q ss_pred Ccc
Q 007444 406 RSI 408 (603)
Q Consensus 406 R~~ 408 (603)
|..
T Consensus 287 Rl~ 289 (498)
T PRK13531 287 DAQ 289 (498)
T ss_pred CHH
Confidence 953
No 16
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.95 E-value=9.2e-28 Score=258.34 Aligned_cols=237 Identities=26% Similarity=0.323 Sum_probs=204.6
Q ss_pred CCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
...+..+||++.++..+ ++..+.+..-+|||.|++||||.++||+||...++
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------------------------- 190 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------------------------- 190 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc--------------------------
Confidence 35678899999999998 56777888899999999999999999999998864
Q ss_pred ccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.+.|||.++++ ..+++|||+ +++.++|....+.|.|..|+||+||||||..||.++|..
T Consensus 191 -------------~~~PFVavNcaAip~~l~ESELFGh---ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~k 254 (464)
T COG2204 191 -------------AKGPFIAVNCAAIPENLLESELFGH---EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVK 254 (464)
T ss_pred -------------cCCCceeeecccCCHHHHHHHhhcc---cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHH
Confidence 36799986665 456679998 899999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
||.+++++. ++|.|.....+.++.||++||.+ .|.|+++|++|++.. .+..|+.++++.||..+..+|...
T Consensus 255 LLRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~-~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 255 LLRVLQERE--FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVV-PLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred HHHHHHcCe--eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccc-eecCCcccccchhHHHHHHHHHHH
Confidence 999999999 89999999999999999999974 589999999999988 899999999999999999888543
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
.. .+...+...++++++..|..|.|++|+ |++.+++ ...+.+...+.|+.+|+..
T Consensus 332 ~~-------------------~~~~~~~~~~s~~a~~~L~~y~WPGNV---REL~N~v---er~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 332 FA-------------------AELGRPPKGFSPEALAALLAYDWPGNV---RELENVV---ERAVILSEGPEIEVEDLPL 386 (464)
T ss_pred HH-------------------HHcCCCCCCCCHHHHHHHHhCCCChHH---HHHHHHH---HHHHhcCCccccchhhccc
Confidence 21 112244567999999999999999999 7777766 4445566777888888764
No 17
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=221.56 Aligned_cols=266 Identities=29% Similarity=0.367 Sum_probs=206.4
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
.....++|+++++..++.+.. ..+|+||.|+||||||++|+.++..+.
T Consensus 21 ~~~~~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~------------------------------ 68 (329)
T COG0714 21 ELEKVVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALG------------------------------ 68 (329)
T ss_pred hcCCeeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhC------------------------------
Confidence 334458999999999988777 579999999999999999999999873
Q ss_pred cccccccccccCCCeEE--cCCCCccccccccccchhccc-cCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 172 DTAGNLKTQIARSPFVQ--IPLGVTEDRLIGSVDVEESVK-TGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~--l~~~~~~~~l~G~ldl~~~l~-~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
.+|+. ....+....++|..++..... .+...+.+|.+..+.++|+|+||||+.++.+++.||.+|
T Consensus 69 ------------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 69 ------------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred ------------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 44544 566788899999987765443 677888999999887799999999999999999999999
Q ss_pred HcCceeEeeCCee-eEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh-hHHHh
Q 007444 249 TEGVNIVEREGIS-FKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER-SNEVF 322 (603)
Q Consensus 249 ~~g~~~v~r~G~s-~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~-~~~~~ 322 (603)
+++.+++. |.. +..|..|++|+|+||.+ ..+.++++|||.+.+.+++|...++...++......... .....
T Consensus 137 ~e~~vtv~--~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v 214 (329)
T COG0714 137 EERQVTVP--GLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLV 214 (329)
T ss_pred hCcEEEEC--CcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhh
Confidence 99997776 444 78888999999999844 358999999999999999886666555555443321111 00000
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC-------CchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC-------QGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v-------~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
+. ..-...+...+.....+.+++++..++..+...... .+.|+...++.++++.|.+.|+..+.++|+
T Consensus 215 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv 289 (329)
T COG0714 215 KP-----VLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDV 289 (329)
T ss_pred hh-----hhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHH
Confidence 00 111223333444455788999999998877654332 268999999999999999999999999999
Q ss_pred HHHHHHHcCCCcc
Q 007444 396 KKAVELVILPRSI 408 (603)
Q Consensus 396 ~~A~~lvl~hR~~ 408 (603)
......++.||..
T Consensus 290 ~~~~~~~~~~~~~ 302 (329)
T COG0714 290 KALAEPALAHRLI 302 (329)
T ss_pred HHHhhhhhhhhhh
Confidence 9999999999965
No 18
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.91 E-value=1.1e-23 Score=222.18 Aligned_cols=228 Identities=25% Similarity=0.315 Sum_probs=179.0
Q ss_pred ccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 007444 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (603)
Q Consensus 97 IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~ 174 (603)
|+|++..++.+ .+..+.....+|||+|++||||+++|++||...++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------------------------------- 48 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------------------------------- 48 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--------------------------------
Confidence 57888777766 34444557789999999999999999999988652
Q ss_pred ccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 175 GNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
...||+.+++... +..+||. +++.++|....++|++..|++|+||||||+.|+..+|..|+.+++
T Consensus 49 -------~~~pfv~vnc~~~~~~~l~~~lfG~---~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 49 -------WQGPLVKLNCAALSENLLDSELFGH---EAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred -------cCCCeEEEeCCCCChHHHHHHHhcc---ccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 2678888877654 3456775 466777877778999999999999999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
++. +.+.|.....+.++.+|+++|.+ .|.++++|++||+.. .|..|+..++..||..+..+|....
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~-~i~lPpLReR~eDI~~L~~~fl~~~----- 190 (329)
T TIGR02974 119 YGE--FERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRERQEDIMLLAEHFAIRM----- 190 (329)
T ss_pred cCc--EEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch-hcCCCchhhhhhhHHHHHHHHHHHH-----
Confidence 998 67888888888899999999974 478999999999765 5667889999999988887764321
Q ss_pred hhhHhhHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~--v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
++..... +.+++++++.|..+.|++|+ |.+.++++.+. .+...+.++.+|+
T Consensus 191 ---------------~~~~~~~~~~~ls~~a~~~L~~y~WPGNv---rEL~n~i~~~~---~~~~~~~~~~~~~ 243 (329)
T TIGR02974 191 ---------------ARELGLPLFPGFTPQAREQLLEYHWPGNV---RELKNVVERSV---YRHGLEEAPIDEI 243 (329)
T ss_pred ---------------HHHhCCCCCCCcCHHHHHHHHhCCCCchH---HHHHHHHHHHH---HhCCCCccchhhc
Confidence 1222223 47999999999999999998 66666664333 3343345666653
No 19
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.91 E-value=3.8e-23 Score=236.24 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=195.4
Q ss_pred CcccccHHHHHHHHHhhhccC---------------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccC
Q 007444 95 AAVVGQDAIKTALLLGAIDRE---------------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p~---------------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~ 153 (603)
..|.|++.+|++|+++.+... ..||||.|+||||||++|+++|++.++....
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yt------- 522 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT------- 522 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccC-------
Confidence 578999999999988776321 1179999999999999999999988742111
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEeccc
Q 007444 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (603)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi 233 (603)
.+.++..+.+..... . ....+|....++|.|..|++|+|||||+
T Consensus 523 ----------------------------sG~~~s~vgLTa~~~-~-------~d~~tG~~~le~GaLvlAdgGtL~IDEi 566 (915)
T PTZ00111 523 ----------------------------SGKSSSSVGLTASIK-F-------NESDNGRAMIQPGAVVLANGGVCCIDEL 566 (915)
T ss_pred ----------------------------CCCCCccccccchhh-h-------cccccCcccccCCcEEEcCCCeEEecch
Confidence 123444333332210 0 1112366678899999999999999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCH
Q 007444 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 234 ~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~ 301 (603)
+.+++..|..|+.+|+++.+.|.+.|+...+++++.||||+||..| .|+++|++||++++.+-..++.
T Consensus 567 dkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 567 DKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred hhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 9999999999999999999999999999999999999999999643 4789999999998766656666
Q ss_pred HHHHHHHHHHHHHH--hhh-----H-H-------------Hhh---h-hhHhhHHHHHHHHHHHHhccccCCCHHHHHHH
Q 007444 302 EDRVAAVGIATQFQ--ERS-----N-E-------------VFK---M-VEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (603)
Q Consensus 302 e~r~eI~~~~~~f~--~~~-----~-~-------------~~~---~-~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L 356 (603)
+.=..|.......- .+. + . ... . ..-..+.|+.+|..||.... -.+++++.+.|
T Consensus 647 ~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i 725 (915)
T PTZ00111 647 DTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVI 725 (915)
T ss_pred HHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHH
Confidence 65555544433210 000 0 0 000 0 00135679999999997543 36899998888
Q ss_pred HHHHHcC-----------------------------C----CCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 357 VMEALRG-----------------------------G----CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 357 ~~~a~~~-----------------------------~----v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
.++.... + -.+.|.+..++|+|.|+|.+.-++.|+.+|+++|+.++
T Consensus 726 ~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~ 804 (915)
T PTZ00111 726 TREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIV 804 (915)
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHH
Confidence 7643210 0 13689999999999999999999999999999999987
No 20
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.90 E-value=8.4e-23 Score=228.11 Aligned_cols=251 Identities=24% Similarity=0.242 Sum_probs=186.7
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
..++..+.++.+|++|+||++++++|..+...+...+|||+||||||||++||+++..+..... +++
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---s~~---------- 118 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA---SPF---------- 118 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccC---CCc----------
Confidence 4567778899999999999999999987777777789999999999999999999986531000 000
Q ss_pred cccccccccccccccccccccCCCeEEcCCCC-------ccccccccccch--h--cc--ccCcccccccchhcccCceE
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-------TEDRLIGSVDVE--E--SV--KTGTTVFQPGLLAEAHRGVL 228 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-------~~~~l~G~ldl~--~--~l--~~g~~~~~~Gll~~A~~gIL 228 (603)
..+.+|+.+++.. ..+.++|+.+-. . .. ..|....++|++.+|++|+|
T Consensus 119 -------------------~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L 179 (531)
T TIGR02902 119 -------------------KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVL 179 (531)
T ss_pred -------------------CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEE
Confidence 0135677766542 233555543110 0 00 12344567899999999999
Q ss_pred EecccccCCHHHHHHHHHHHHcCceeEee-----CC----------eeeEecCCcEEEEEeCCCCCCccHHHHhhhcccc
Q 007444 229 YIDEINLLDEGISNLLLNVLTEGVNIVER-----EG----------ISFKHPCKPLLIATYNPEEGVVREHLLDRIAINL 293 (603)
Q Consensus 229 ~IDEi~~l~~~~~~~LL~~l~~g~~~v~r-----~G----------~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v 293 (603)
|||||+.|+...|+.||.+|+++.+.++. .+ .....|++|.+|++|+.++..+.++|.+|+...
T Consensus 180 ~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I- 258 (531)
T TIGR02902 180 FIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI- 258 (531)
T ss_pred EEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee-
Confidence 99999999999999999999998865541 11 123468899999999888889999999998543
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
.+. |...+++.+|++... +. ..+.+++++++.|..++| +.|..++
T Consensus 259 ~f~-pL~~eei~~Il~~~a---------------------------~k--~~i~is~~al~~I~~y~~-----n~Rel~n 303 (531)
T TIGR02902 259 FFR-PLLDEEIKEIAKNAA---------------------------EK--IGINLEKHALELIVKYAS-----NGREAVN 303 (531)
T ss_pred eCC-CCCHHHHHHHHHHHH---------------------------HH--cCCCcCHHHHHHHHHhhh-----hHHHHHH
Confidence 555 556666666654311 11 236799999999999987 2599999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 374 AARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
+++.|..+|..+++..|+.+||++++.
T Consensus 304 ll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 304 IVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999999888999999999999854
No 21
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.90 E-value=8.6e-23 Score=226.53 Aligned_cols=244 Identities=23% Similarity=0.287 Sum_probs=180.9
Q ss_pred CCCCCcccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.+.|++|+|++..+..+. +..+.+...+|||.|++||||+++|++||..++.....
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~---------------------- 272 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDA---------------------- 272 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccc----------------------
Confidence 367999999998887773 33445567899999999999999999999873210000
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCccc-ccccchhcccCceEEecccccCCHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~-~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
.....+.||+.++++.. +..|||+ +++.++|... .++|++..|++|+||||||+.|+..+|.
T Consensus 273 ---------~S~r~~~pfv~inCaal~e~lleseLFG~---~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 340 (538)
T PRK15424 273 ---------RQGKKSHPFVAVNCGAIAESLLEAELFGY---EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 340 (538)
T ss_pred ---------cCccCCCCeEEeecccCChhhHHHHhcCC---ccccccCccccccCCchhccCCCEEEEcChHhCCHHHHH
Confidence 00013679999887765 4567886 4566667653 6789999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.|+.+++++. +.|.|.....+.++.+|++||.+ +|.|+++|++|+... .+..|+..+++.||..+..+|..
T Consensus 341 kLl~~L~e~~--~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~-~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 341 RLLRVLEEKE--VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSIL-RLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred HHHhhhhcCe--EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCC-eecCCChhhchhHHHHHHHHHHH
Confidence 9999999998 67888888889999999999964 478999999999886 78889999999999988877754
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHH-------HHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCC
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQL-------KYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l-------~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~ 389 (603)
... +.. +..++++++ +.|..+.|++|+ |++.++++.+..++.-.....
T Consensus 418 ~~~--------------------~~~--~~~~~~~a~~~~~~a~~~L~~y~WPGNv---REL~nvier~~i~~~~~~~~~ 472 (538)
T PRK15424 418 QSL--------------------AAL--SAPFSAALRQGLQQCETLLLHYDWPGNV---RELRNLMERLALFLSVEPTPD 472 (538)
T ss_pred HHH--------------------HHc--CCCCCHHHHHhhHHHHHHHHhCCCCchH---HHHHHHHHHHHHhcCCCCcCc
Confidence 210 111 123555444 788999999998 666666654443221111235
Q ss_pred CcHHHHH
Q 007444 390 VNVDDLK 396 (603)
Q Consensus 390 Vt~eDv~ 396 (603)
++.+++.
T Consensus 473 i~~~~l~ 479 (538)
T PRK15424 473 LTPQFLQ 479 (538)
T ss_pred cCHHHhh
Confidence 6666653
No 22
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.90 E-value=6.2e-24 Score=224.32 Aligned_cols=263 Identities=21% Similarity=0.227 Sum_probs=182.2
Q ss_pred CcccccHHHHHHHHHhhhccC------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
..|.|.+.+|+++++..+... .-||||.|.||||||.|.+.++.+.|+-.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v------------------ 85 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV------------------ 85 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE------------------
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE------------------
Confidence 468999999999987776431 23699999999999999999888776311
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
+.-..+.+...|+..+ .+.-..|....++|.+..|++||++|||++.++.+..+
T Consensus 86 ------------------------~~~g~~~s~~gLta~~--~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~ 139 (331)
T PF00493_consen 86 ------------------------YTSGKGSSAAGLTASV--SRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRD 139 (331)
T ss_dssp ------------------------EEECCGSTCCCCCEEE--CCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHH
T ss_pred ------------------------EECCCCcccCCcccee--ccccccceeEEeCCchhcccCceeeecccccccchHHH
Confidence 1122334444455543 22233466788899999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
.|+++|+.+.+.|...|+..++|+++.|+|++||..| .++++|++||++.+.+..+++.+.-..+.+.
T Consensus 140 ~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 140 ALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp HHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHH
T ss_pred HHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999764 3678999999999877666676655555554
Q ss_pred HHHHHhhhH----HHhh--hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC----------CCchhHHHHH
Q 007444 311 ATQFQERSN----EVFK--MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------CQGHRAELYA 374 (603)
Q Consensus 311 ~~~f~~~~~----~~~~--~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~----------v~s~Ra~i~l 374 (603)
......... .... ...-..+.++..|..+|.... ..+++++.++|..+..... ..+.|.+..+
T Consensus 220 il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~-P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSL 298 (331)
T PF00493_consen 220 ILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIH-PVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESL 298 (331)
T ss_dssp HHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHH
T ss_pred EEeccccccccccccccccCCccCHHHHHHHHHHHHhhcc-cccCHHHHHHHHHHHHHhcccccccccccccchhhHHHH
Confidence 433221110 0011 023345678999999995443 4799999999988764321 2367999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
+|+|.++|.++.++.|+.+|+..|+.+.
T Consensus 299 IRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 299 IRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 9999999999999999999999999886
No 23
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-23 Score=219.73 Aligned_cols=228 Identities=27% Similarity=0.294 Sum_probs=181.8
Q ss_pred CCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
...+.++||.+...+.+ .+-+..|...+|||.|++||||+.+|+.||....+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------------------------- 128 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------------------------- 128 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc-------------------------
Confidence 46789999998655555 455577889999999999999999999999665320
Q ss_pred ccccccccccccccCCCeEEcCCCC-----ccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~-----~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
...|||.++|++ .+.+|||+ +++.++|+...++|++.+|+||+||+|||.+||...|..
T Consensus 129 -------------~~~PFI~~NCa~~~en~~~~eLFG~---~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~k 192 (403)
T COG1221 129 -------------AEAPFIAFNCAAYSENLQEAELFGH---EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEK 192 (403)
T ss_pred -------------cCCCEEEEEHHHhCcCHHHHHHhcc---ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHH
Confidence 167888876654 34578997 689999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC-CccH--HHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVRE--HLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-~L~~--~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
|+.+|++|. ++|-|.+..++.++.+|++||-+.. .+.. .|++|.... .|..|+..+++.||+.+..+|...
T Consensus 193 Ll~~le~g~--~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~-~I~LPpLrER~~Di~~L~e~Fl~~--- 266 (403)
T COG1221 193 LLRVLEEGE--YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL-TITLPPLRERKEDILLLAEHFLKS--- 266 (403)
T ss_pred HHHHHHcCc--eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc-eecCCChhhchhhHHHHHHHHHHH---
Confidence 999999999 8899999999999999999995432 2344 788855444 455688999999999999888532
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHc
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDV-AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE 385 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v-~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~ 385 (603)
.+++....+ ..+++++..|.++.|++|+ |.+.++++.+.+.+...
T Consensus 267 -----------------~~~~l~~~~~~~~~~a~~~L~~y~~pGNi---rELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 267 -----------------EARRLGLPLSVDSPEALRALLAYDWPGNI---RELKNLVERAVAQASGE 312 (403)
T ss_pred -----------------HHHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHHhccc
Confidence 233333333 3456899999999999999 78888887777665443
No 24
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.89 E-value=1.1e-22 Score=225.67 Aligned_cols=237 Identities=24% Similarity=0.287 Sum_probs=185.4
Q ss_pred CCCCCcccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.+.|++|+|+++.++.+. +..+.....+|||.|++||||+++|++||...++
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------------------------- 261 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------------------------- 261 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--------------------------
Confidence 488999999998887772 3344556789999999999999999999987642
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCccc-ccccchhcccCceEEecccccCCHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~-~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
.+.||+.+++... +..|||+ +++.++|... ..+|++..|++|+||||||+.|+..+|.
T Consensus 262 -------------~~~pfv~inC~~l~e~lleseLFG~---~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 325 (526)
T TIGR02329 262 -------------RDFPFVAINCGAIAESLLEAELFGY---EEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQT 325 (526)
T ss_pred -------------CCCCEEEeccccCChhHHHHHhcCC---cccccccccccccccchhhcCCceEEecChHhCCHHHHH
Confidence 3678998887765 4577886 4566667653 5789999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.|+.+++++. +.|.|.....+.++.+|+++|.+ +|.|+++|++||... .+..|+..+++.||..+..+|..
T Consensus 326 ~Ll~~L~~~~--~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~-~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 326 RLLRVLEERE--VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSIL-RIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred HHHHHHhcCc--EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCc-EEeCCCchhchhHHHHHHHHHHH
Confidence 9999999988 67778888888899999999864 478999999999876 67778999999999988877754
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHH-------HHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCC
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKY-------LVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~-------L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~ 389 (603)
... ... .+.++++++.. |..+.|++|+ |++.++++.+..++.-.....
T Consensus 403 ~~~--------------------~~~--~~~~~~~a~~~~~~~~~~L~~y~WPGNv---rEL~nvier~~i~~~~~~~~~ 457 (526)
T TIGR02329 403 QAA--------------------AAL--RLPDSEAAAQVLAGVADPLQRYPWPGNV---RELRNLVERLALELSAMPAGA 457 (526)
T ss_pred HHH--------------------HHc--CCCCCHHHHHHhHHHHHHHHhCCCCchH---HHHHHHHHHHHHhcccCCCCc
Confidence 211 111 34588888888 9999999998 666666644443322112357
Q ss_pred CcHHHHHH
Q 007444 390 VNVDDLKK 397 (603)
Q Consensus 390 Vt~eDv~~ 397 (603)
|+.+|+..
T Consensus 458 I~~~~l~~ 465 (526)
T TIGR02329 458 LTPDVLRA 465 (526)
T ss_pred cCHHHhhh
Confidence 88888754
No 25
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.89 E-value=1.9e-22 Score=212.83 Aligned_cols=231 Identities=23% Similarity=0.308 Sum_probs=178.6
Q ss_pred CCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 94 f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
|+.++|.+..++.+ .+..+.+...+|||.|++||||+++|++||...++
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r----------------------------- 55 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR----------------------------- 55 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------------------------
Confidence 56799999887777 34455567789999999999999999999987652
Q ss_pred cccccccccccCCCeEEcCCCCcc-----ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHH
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~~-----~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~ 246 (603)
...||+.+++.... ..|||. +++.+.|....++|++..|++|+||||||+.|+..+|..|+.
T Consensus 56 ----------~~~pfv~v~c~~~~~~~~~~~lfg~---~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~ 122 (326)
T PRK11608 56 ----------WQGPFISLNCAALNENLLDSELFGH---EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLR 122 (326)
T ss_pred ----------cCCCeEEEeCCCCCHHHHHHHHccc---cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHH
Confidence 25789888877653 456775 345556666667899999999999999999999999999999
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+++++. +.+.|.....+.++.+|+|++.+ .+.++++|++||... .|..|+..+++.||..+..+|....
T Consensus 123 ~l~~~~--~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~-~i~lPpLReR~eDI~~L~~~fl~~~-- 197 (326)
T PRK11608 123 VIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFD-VVQLPPLRERQSDIMLMAEHFAIQM-- 197 (326)
T ss_pred HHhcCc--EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCC-EEECCChhhhhhhHHHHHHHHHHHH--
Confidence 999987 66777777788899999999864 578999999999765 5666889999999988877764321
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~--v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
+++.... ..+++++++.|..+.|++|+ |++.++++.+- .......++.+++
T Consensus 198 ------------------~~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~vl~~a~---~~~~~~~~~~~~l 250 (326)
T PRK11608 198 ------------------CRELGLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSV---YRHGTSEYPLDNI 250 (326)
T ss_pred ------------------HHHhCCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHHH---HhcCCCCCchhhc
Confidence 1222222 36999999999999999998 66666664433 3333445555553
No 26
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.89 E-value=3.1e-22 Score=224.74 Aligned_cols=237 Identities=25% Similarity=0.342 Sum_probs=186.8
Q ss_pred CCCCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
.+.+.|..|+|++..++.+ .+..+.....+|||+|++||||+++|++||...++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r------------------------ 245 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR------------------------ 245 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC------------------------
Confidence 4568899999999888877 33344456789999999999999999999998652
Q ss_pred ccccccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
...||+.+++... +..|||+ +++.++|....++|++..|++|+||||||+.|+..+|
T Consensus 246 ---------------~~~pfv~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q 307 (534)
T TIGR01817 246 ---------------AKRPFVKVNCAALSETLLESELFGH---EKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ 307 (534)
T ss_pred ---------------CCCCeEEeecCCCCHHHHHHHHcCC---CCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH
Confidence 2678888887655 3466776 3555666666678999999999999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
..|+.+++++. +.+.|.....+.++.+|+|+|.+ .+.++++|++||... .|..|+..+++.||..+..+|.
T Consensus 308 ~~Ll~~l~~~~--~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLreR~eDi~~L~~~~l 384 (534)
T TIGR01817 308 AKLLRVLQEGE--FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV-PIFLPPLRERREDIPLLAEAFL 384 (534)
T ss_pred HHHHHHHhcCc--EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC-eeeCCCcccccccHHHHHHHHH
Confidence 99999999987 56667766777789999999864 478999999999876 6667889999999988877764
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
... ++.....+.+++++++.|..+.|++|+ |.+.++++.+. .+.....|+.+|+
T Consensus 385 ~~~--------------------~~~~~~~~~~s~~a~~~L~~~~WPGNv---rEL~~v~~~a~---~~~~~~~I~~~~l 438 (534)
T TIGR01817 385 EKF--------------------NRENGRPLTITPSAIRVLMSCKWPGNV---RELENCLERTA---TLSRSGTITRSDF 438 (534)
T ss_pred HHH--------------------HHHcCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCcccHHHC
Confidence 321 122222378999999999999999998 66666665443 3455568999887
Q ss_pred H
Q 007444 396 K 396 (603)
Q Consensus 396 ~ 396 (603)
.
T Consensus 439 ~ 439 (534)
T TIGR01817 439 S 439 (534)
T ss_pred c
Confidence 5
No 27
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.88 E-value=7.2e-22 Score=220.32 Aligned_cols=222 Identities=24% Similarity=0.310 Sum_probs=180.4
Q ss_pred CCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
.+..|+|++..++.+ .+..+.+...+|||+|++||||+++|++||...++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---------------------------- 236 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---------------------------- 236 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc----------------------------
Confidence 788999999988877 45556667889999999999999999999998752
Q ss_pred ccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
.+.||+.+++... +..|||+ +++.++|....++|++..|++|+||||||+.|+..+|..|+
T Consensus 237 -----------~~~p~v~v~c~~~~~~~~e~~lfG~---~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll 302 (509)
T PRK05022 237 -----------ADKPLVYLNCAALPESLAESELFGH---VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLL 302 (509)
T ss_pred -----------CCCCeEEEEcccCChHHHHHHhcCc---cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHH
Confidence 2568888776654 4567886 35666677667789999999999999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.+++++. +.+.|.....+.++.+|++||.+ .+.|+++|++||... .|..|+..+++.||..+..+|....
T Consensus 303 ~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~-~i~lPpLreR~eDI~~L~~~fl~~~- 378 (509)
T PRK05022 303 RVLQYGE--IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVF-PLSVPPLRERGDDVLLLAGYFLEQN- 378 (509)
T ss_pred HHHhcCC--EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhccccc-EeeCCCchhchhhHHHHHHHHHHHH-
Confidence 9999988 67778877888899999999964 478999999999886 6777899999999988887774321
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~A 382 (603)
++.. .+.+.+++++++.|..+.|++|+ |++.++++.|...+
T Consensus 379 -------------------~~~~~~~~~~~s~~a~~~L~~y~WPGNv---rEL~~~i~ra~~~~ 420 (509)
T PRK05022 379 -------------------RARLGLRSLRLSPAAQAALLAYDWPGNV---RELEHVISRAALLA 420 (509)
T ss_pred -------------------HHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHhc
Confidence 1222 24578999999999999999998 67767765555443
No 28
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.87 E-value=2.3e-21 Score=222.22 Aligned_cols=235 Identities=16% Similarity=0.213 Sum_probs=183.7
Q ss_pred CCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++|++++|.+..++.+ .+..+.....+|||+|++||||+++|++||...++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------------------------- 374 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------------------------- 374 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--------------------------
Confidence 56799999999877766 23333456788999999999999999999998642
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
...||+.+++... +++|||+.. .+.....+|++..|++|+||||||+.|+..+|..
T Consensus 375 -------------~~~pfv~vnc~~~~~~~~~~elfg~~~------~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~ 435 (638)
T PRK11388 375 -------------AAGPYIAVNCQLYPDEALAEEFLGSDR------TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSA 435 (638)
T ss_pred -------------cCCCeEEEECCCCChHHHHHHhcCCCC------cCccCCCCCceeECCCCEEEEcChhhCCHHHHHH
Confidence 2678988877665 456888641 1223446789999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
|+.+++++. +.+.|.....+.++.+|+|||.+ ++.++++|++||... .|..|+..+++.||..+...|...
T Consensus 436 Ll~~l~~~~--~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 512 (638)
T PRK11388 436 LLQVLKTGV--ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF-EITIPPLRMRREDIPALVNNKLRS 512 (638)
T ss_pred HHHHHhcCc--EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee-EEeCCChhhhhhHHHHHHHHHHHH
Confidence 999999988 67778877888899999999964 578999999999887 778888999889998887776431
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
+ ++.....+.+++++++.|..+.|++|+ |.+.++++.+.. ......|+.+|+..
T Consensus 513 ------------------~--~~~~~~~~~~s~~a~~~L~~y~WPGNv---reL~~~l~~~~~---~~~~~~i~~~~lp~ 566 (638)
T PRK11388 513 ------------------L--EKRFSTRLKIDDDALARLVSYRWPGND---FELRSVIENLAL---SSDNGRIRLSDLPE 566 (638)
T ss_pred ------------------H--HHHhCCCCCcCHHHHHHHHcCCCCChH---HHHHHHHHHHHH---hCCCCeecHHHCch
Confidence 1 122222467999999999999999998 677777655443 34455789888765
Q ss_pred HH
Q 007444 398 AV 399 (603)
Q Consensus 398 A~ 399 (603)
.+
T Consensus 567 ~~ 568 (638)
T PRK11388 567 HL 568 (638)
T ss_pred hh
Confidence 43
No 29
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.87 E-value=3.4e-21 Score=215.12 Aligned_cols=235 Identities=19% Similarity=0.241 Sum_probs=180.3
Q ss_pred CCCCCCcccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 90 QFFPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
..+.|++|+|.+..++.+. +..+.....+|||+|++||||+++|+++|....+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r------------------------- 253 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR------------------------- 253 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------------------------
Confidence 4578999999998766662 2233446788999999999999999999987642
Q ss_pred cccccccccccccccCCCeEEcCCCCccc-----cccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGVTED-----RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~~~-----~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
...||+.+++....+ .|||.. .+.++|.....+|++..|++|+||||||+.|+..+|.
T Consensus 254 --------------~~~pfv~inca~~~~~~~e~elFG~~---~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~ 316 (520)
T PRK10820 254 --------------GKKPFLALNCASIPDDVVESELFGHA---PGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQA 316 (520)
T ss_pred --------------CCCCeEEeccccCCHHHHHHHhcCCC---CCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHH
Confidence 257888888776543 567752 2333344455689999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.|+.+++++. +.+.|.....+.++.+|+|++.+ .|.++++|++||... .+..|+..+++.||..+..+|..
T Consensus 317 ~Ll~~l~~~~--~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~-~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 317 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL-TLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred HHHHHHhcCC--cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCee-EEeCCCcccChhHHHHHHHHHHH
Confidence 9999999987 67777777777788999998853 478999999999874 77778999999999888777643
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
.. +.+. ...+.++++++++|..+.|++|+ |.+.+++..|- .+.....|+.+|+
T Consensus 394 ~~--------------------~~~~g~~~~~ls~~a~~~L~~y~WPGNv---reL~nvl~~a~---~~~~~~~i~~~~~ 447 (520)
T PRK10820 394 RF--------------------ADEQGVPRPKLAADLNTVLTRYGWPGNV---RQLKNAIYRAL---TQLEGYELRPQDI 447 (520)
T ss_pred HH--------------------HHHcCCCCCCcCHHHHHHHhcCCCCCHH---HHHHHHHHHHH---HhCCCCcccHHHc
Confidence 21 1222 23457999999999999999998 66666654433 2344557888886
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=7.2e-22 Score=193.58 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=132.9
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHH--hhh---ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLL--GAI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l--aav---~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
.+.....+|..|+++|||++++..+.+ .++ +....|+|||||||+||||||+.|++.+.
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---------------- 75 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---------------- 75 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----------------
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC----------------
Confidence 344455689999999999999998732 222 12457899999999999999999999973
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccC
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLL 236 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l 236 (603)
.+|...+....+ ..-|+.. ++.. ..+-||||||||++
T Consensus 76 --------------------------~~~~~~sg~~i~----k~~dl~~------------il~~l~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 76 --------------------------VNFKITSGPAIE----KAGDLAA------------ILTNLKEGDILFIDEIHRL 113 (233)
T ss_dssp ----------------------------EEEEECCC------SCHHHHH------------HHHT--TT-EEEECTCCC-
T ss_pred --------------------------CCeEeccchhhh----hHHHHHH------------HHHhcCCCcEEEEechhhc
Confidence 344433221111 1112111 1111 24569999999999
Q ss_pred CHHHHHHHHHHHHcCceeE-eeCC---eeeEec-CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 237 DEGISNLLLNVLTEGVNIV-EREG---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 237 ~~~~~~~LL~~l~~g~~~v-~r~G---~s~~~p-~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
+..+++.|+.+|+++.+.+ .-.| .+++++ .+|.+||+|+ ..|.|+.+|.|||++...+. .++.++..+|+.+.
T Consensus 114 nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT-r~g~ls~pLrdRFgi~~~l~-~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 114 NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT-RAGLLSSPLRDRFGIVLRLE-FYSEEELAKIVKRS 191 (233)
T ss_dssp -HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES-SGCCTSHCCCTTSSEEEE-----THHHHHHHHHHC
T ss_pred cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec-cccccchhHHhhcceecchh-cCCHHHHHHHHHHH
Confidence 9999999999999999744 2222 234443 3699999999 78999999999999987787 47888777776542
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aa 383 (603)
...-++.++++...+|+..+ .. ..|-..++++-++.+|.
T Consensus 192 -----------------------------a~~l~i~i~~~~~~~Ia~rs---rG-tPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 192 -----------------------------ARILNIEIDEDAAEEIARRS---RG-TPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp -----------------------------CHCTT-EE-HHHHHHHHHCT---TT-SHHHHHHHHHHHCCCCC
T ss_pred -----------------------------HHHhCCCcCHHHHHHHHHhc---CC-ChHHHHHHHHHHHHHHH
Confidence 12235789999877775543 33 68999999988776553
No 31
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.86 E-value=2.7e-20 Score=190.66 Aligned_cols=212 Identities=21% Similarity=0.187 Sum_probs=142.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcC--CC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIP--LG 192 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~--~~ 192 (603)
...+|||.||||||||++|++++..+. .+|+.+. ..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg------------------------------------------~~~~~i~~~~~ 57 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRD------------------------------------------RPVMLINGDAE 57 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhC------------------------------------------CCEEEEeCCcc
Confidence 357899999999999999999998763 2333222 22
Q ss_pred Cccccccccccchh--------------ccccCcccccccchhc--ccCceEEecccccCCHHHHHHHHHHHHcCceeEe
Q 007444 193 VTEDRLIGSVDVEE--------------SVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (603)
Q Consensus 193 ~~~~~l~G~ldl~~--------------~l~~g~~~~~~Gll~~--A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~ 256 (603)
.+...++|...... .-......+.+|.+.. ++|++|||||||++++++++.|+.+|+++.+.+.
T Consensus 58 ~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~ 137 (262)
T TIGR02640 58 LTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELP 137 (262)
T ss_pred CCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEcc
Confidence 23334444321000 0001223456777765 4789999999999999999999999999986663
Q ss_pred e---CCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhh
Q 007444 257 R---EGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (603)
Q Consensus 257 r---~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~ 329 (603)
. .+..+..+.+|.+|+|+|+.. .+++++|++||. .+.+++| +.++..+|+....
T Consensus 138 ~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~-~i~i~~P-~~~~e~~Il~~~~----------------- 198 (262)
T TIGR02640 138 GKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLI-TIFMDYP-DIDTETAILRAKT----------------- 198 (262)
T ss_pred CCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcE-EEECCCC-CHHHHHHHHHHhh-----------------
Confidence 2 233444556899999999864 257899999995 4588876 6776666765421
Q ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc------CCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHc
Q 007444 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (603)
Q Consensus 330 ~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~------~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (603)
.++++..++++.++.. ....|.|+.+.+.+ +.+++.++..|+++|+.+.+.-||
T Consensus 199 -----------------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 199 -----------------DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE---VATQQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred -----------------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH---HHHHcCCCCCCCcHHHHHHHHHHh
Confidence 1233333333332211 11235787777664 455567899999999999999999
Q ss_pred CCCc
Q 007444 404 LPRS 407 (603)
Q Consensus 404 ~hR~ 407 (603)
.||.
T Consensus 259 ~~~~ 262 (262)
T TIGR02640 259 ASRV 262 (262)
T ss_pred ccCC
Confidence 9983
No 32
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.85 E-value=7.6e-21 Score=193.96 Aligned_cols=232 Identities=22% Similarity=0.309 Sum_probs=187.1
Q ss_pred CCCCCCcccccHHHHHHHHHh--hhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 90 QFFPLAAVVGQDAIKTALLLG--AIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~la--av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
...+|..|++.+..++.+... .+++-..++||.|++||||.++||+.|...|+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R------------------------- 253 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR------------------------- 253 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc-------------------------
Confidence 457899999999887777322 23344679999999999999999999988774
Q ss_pred cccccccccccccccCCCeEEcC-----CCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIP-----LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~-----~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
...||+.++ ....++++||+-- | ..-.+|+|..|++|.+|+|||..+++.+|.
T Consensus 254 --------------~~~pFlalNCA~lPe~~aEsElFG~ap-------g-~~gk~GffE~AngGTVlLDeIgEmSp~lQa 311 (511)
T COG3283 254 --------------HSKPFLALNCASLPEDAAESELFGHAP-------G-DEGKKGFFEQANGGTVLLDEIGEMSPRLQA 311 (511)
T ss_pred --------------cCCCeeEeecCCCchhHhHHHHhcCCC-------C-CCCccchhhhccCCeEEeehhhhcCHHHHH
Confidence 367787754 4556778999621 2 344579999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC------CCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.||.++.+|. +.|.|....+-.++.||+||.- +.|.++++|+.|+++. ++..|+.++.-.+|..+.+.|..
T Consensus 312 KLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVL-tl~~PpLRer~~di~pL~e~Fv~ 388 (511)
T COG3283 312 KLLRFLNDGT--FRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVL-TLNLPPLRERPQDIMPLAELFVQ 388 (511)
T ss_pred HHHHHhcCCc--eeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhee-eecCCccccCcccchHHHHHHHH
Confidence 9999999998 8899999999999999999985 4699999999999987 88889999999999998888743
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
... .+...+..+++++.+.+|..|.|++|+ |.+-+++.-| .+..+|. .++++|+.
T Consensus 389 q~s-------------------~elg~p~pkl~~~~~~~L~~y~WpGNV---RqL~N~iyRA--~s~~Eg~-~l~i~~i~ 443 (511)
T COG3283 389 QFS-------------------DELGVPRPKLAADLLTVLTRYAWPGNV---RQLKNAIYRA--LTLLEGY-ELRIEDIL 443 (511)
T ss_pred HHH-------------------HHhCCCCCccCHHHHHHHHHcCCCccH---HHHHHHHHHH--HHHhccC-ccchhhcc
Confidence 211 122345567999999999999999998 8877776444 4445554 68888774
No 33
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.85 E-value=4.1e-22 Score=196.72 Aligned_cols=102 Identities=33% Similarity=0.473 Sum_probs=87.1
Q ss_pred cCCCCCcccccccCCCccccccCCCCCCCCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhccCCcEEE
Q 007444 486 RGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVG 565 (603)
Q Consensus 486 ~~~~Gr~~~~~~~~~rGr~v~~~~~~~~~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~~~~~l~i 565 (603)
.+.+|+++.+.+. .||+|+++ .|.++..+|+|++|||+|+ + ..+.|+++|||.|+|++|+++|||
T Consensus 18 ~~~~G~~s~~~~~-~rG~~~~~-~~~~~~~~i~~~aTLraA~-----~--------g~~~i~p~Dlr~~~r~~r~g~lvv 82 (261)
T COG1240 18 TGTSGRRSAARSG-RRGRYVRA-LPNGPAHRLAVDATLRAAA-----A--------GPVAIEPEDLREKIREGRAGNLIV 82 (261)
T ss_pred cCCCCCccccccc-cccccccc-cCCCCcchhhhhhhHHHhh-----C--------CCCccCHHHHHHHHhccCcCCcEE
Confidence 3457777766666 99999994 6667788999999999999 1 134699999999999999999999
Q ss_pred EEEeCCchhhhh-hhhHHhHHHHHHhhcccc--ccccccCC
Q 007444 566 LMFSVLILQLIL-LPFQEEKGKRMKLIFPQK--PSCIFYSG 603 (603)
Q Consensus 566 fvvDaS~gSma~-~Rm~~aKgav~~lL~da~--~~~~~~~~ 603 (603)
|||||| |||+. +||++|||++++||+||| +|||+||+
T Consensus 83 fvVDAS-gSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~ 122 (261)
T COG1240 83 FVVDAS-GSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIA 122 (261)
T ss_pred EEEeCc-ccchhHHHHHHHHHHHHHHHHHHHHccceEEEEE
Confidence 999999 99977 799999999999999999 56666653
No 34
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.6e-20 Score=206.72 Aligned_cols=267 Identities=21% Similarity=0.209 Sum_probs=199.9
Q ss_pred CCcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 94 LAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 94 f~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
...|.|++.+|+|+++..+.. +.-||||.|.||||||.|.+.+++.+|+--..
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt--------------- 349 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT--------------- 349 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE---------------
Confidence 567899999999998877632 12359999999999999999999999742211
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
-..+.+...|...+. +.-.+|....+.|.|..|++||++|||++.++....
T Consensus 350 ---------------------------sgkgss~~GLTAav~--rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr 400 (682)
T COG1241 350 ---------------------------SGKGSSAAGLTAAVV--RDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR 400 (682)
T ss_pred ---------------------------ccccccccCceeEEE--EccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH
Confidence 112223333333221 111135566788999999999999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
.+|+.+|+.+.+.+...|+..++++++.++|+.||..| .|+++||+||++.+.+..-++.+.-.+|.+
T Consensus 401 ~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 401 VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred HHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 99999999999999999999999999999999999665 377899999999987765556554445555
Q ss_pred HHHHHHh--hhHHH-----hhhhh-HhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC------------CCchh
Q 007444 310 IATQFQE--RSNEV-----FKMVE-EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG------------CQGHR 369 (603)
Q Consensus 310 ~~~~f~~--~~~~~-----~~~~~-~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~------------v~s~R 369 (603)
..+..-. .+... .+... ...+.++..|..||.... ..+++++.+.|.++..... ..+.|
T Consensus 481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~R 559 (682)
T COG1241 481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVT-PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITAR 559 (682)
T ss_pred HHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHHHhhhccccccccCcccccHH
Confidence 4433211 00000 00000 024568999999998632 4799999999888754322 24689
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 370 AELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 370 a~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
.+..++|++.|+|.+.-.+.|+.+|+.+|++++..-
T Consensus 560 qLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 560 QLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFS 595 (682)
T ss_pred HHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998643
No 35
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-20 Score=192.36 Aligned_cols=223 Identities=21% Similarity=0.269 Sum_probs=167.1
Q ss_pred CCCCCCCCcccccHHHHHHHH----Hhhhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALL----LGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~----laav~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+..++++|-|.++-++.|. +-..+| ..+|||||||||||||+|||++|+..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-------------- 209 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-------------- 209 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--------------
Confidence 357789999999997777663 222333 24789999999999999999999864
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+..|+.+..+.....++|. |.+ ....+|..| ...|+|||
T Consensus 210 ----------------------------~AtFIrvvgSElVqKYiGE---------GaR-lVRelF~lArekaPsIIFiD 251 (406)
T COG1222 210 ----------------------------DATFIRVVGSELVQKYIGE---------GAR-LVRELFELAREKAPSIIFID 251 (406)
T ss_pred ----------------------------CceEEEeccHHHHHHHhcc---------chH-HHHHHHHHHhhcCCeEEEEe
Confidence 6789999988888999995 543 334566666 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+ +.++|..++++|.+-. |..- ..++-||++|| ....|+|+||+ ||+..|+++.
T Consensus 252 EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD------GFD~--~~nvKVI~ATN-R~D~LDPALLRPGR~DRkIEfpl- 321 (406)
T COG1222 252 EIDAIGAKRFDSGTSGDREVQRTMLELLNQLD------GFDP--RGNVKVIMATN-RPDILDPALLRPGRFDRKIEFPL- 321 (406)
T ss_pred chhhhhcccccCCCCchHHHHHHHHHHHHhcc------CCCC--CCCeEEEEecC-CccccChhhcCCCcccceeecCC-
Confidence 99976 5689999999987643 3322 23789999999 78889999998 9999999995
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.+.|.+|++.... ...+.+++ ++.|+..+...+. -..-.++.-
T Consensus 322 Pd~~gR~~Il~IHtr-------------------------------kM~l~~dvd~e~la~~~~g~sG---AdlkaictE 367 (406)
T COG1222 322 PDEEGRAEILKIHTR-------------------------------KMNLADDVDLELLARLTEGFSG---ADLKAICTE 367 (406)
T ss_pred CCHHHHHHHHHHHhh-------------------------------hccCccCcCHHHHHHhcCCCch---HHHHHHHHH
Confidence 599999999875421 12233322 3455555544333 334455667
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
|.-+|..++|..||.+|+.+|++-|+...
T Consensus 368 AGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 368 AGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 77788888999999999999999987754
No 36
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.84 E-value=4.9e-20 Score=202.45 Aligned_cols=232 Identities=29% Similarity=0.352 Sum_probs=181.5
Q ss_pred CCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
.|..++|.+..+..+ .+..+.+...+|+|.|++||||+++|+++|...+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---------------------------- 188 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---------------------------- 188 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc----------------------------
Confidence 566789988776666 23334456788999999999999999999988642
Q ss_pred ccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
...||+.+++... +..|||. +++.++|.....+|++..|++|+||||||+.|+..+|..|+
T Consensus 189 -----------~~~~~v~v~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~ 254 (445)
T TIGR02915 189 -----------KDKRFVAINCAAIPENLLESELFGY---EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLL 254 (445)
T ss_pred -----------CCCCeEEEECCCCChHHHHHHhcCC---CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHH
Confidence 2567888777665 3456675 45666677677899999999999999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
++++++. +.+.|....++.++.+|+|+|.+ .|.++++|++||... .|..|+..+++.||..+..+|.+..
T Consensus 255 ~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~lPpLr~R~~Di~~l~~~~l~~~- 330 (445)
T TIGR02915 255 RFLQERV--IERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEI-SITIPPLRSRDGDAVLLANAFLERF- 330 (445)
T ss_pred HHHhhCe--EEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccc-eecCCCchhchhhHHHHHHHHHHHH-
Confidence 9999987 67778888888999999999975 478999999999876 7778899999999988877664321
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l-~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
++... +.+.+++++++.|..+.|++|+ |.+.++++.|. .+.....|+.+|+
T Consensus 331 -------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~i~~a~---~~~~~~~i~~~~l 382 (445)
T TIGR02915 331 -------------------ARELKRKTKGFTDDALRALEAHAWPGNV---RELENKVKRAV---IMAEGNQITAEDL 382 (445)
T ss_pred -------------------HHHhCCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCcccHHHc
Confidence 12222 2357999999999999999998 66666665443 3344457887775
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=200.59 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=166.1
Q ss_pred CCCCCCcccccHHHHHHHHH---hhhccC---------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLL---GAIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l---aav~p~---------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
..+.|++|.|.|++|..|.- -.-+|. .+||||.||||||||+|||++|.+.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------------- 361 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------------- 361 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----------------
Confidence 46889999999999999932 123551 4669999999999999999999874
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi~ 234 (603)
+.||+....+..++.++|. |+++.+ .||..|+ .+|||||||+
T Consensus 362 -------------------------~VPFF~~sGSEFdEm~VGv---------GArRVR-dLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 362 -------------------------GVPFFYASGSEFDEMFVGV---------GARRVR-DLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred -------------------------CCCeEeccccchhhhhhcc---------cHHHHH-HHHHHHHhcCCeEEEEechh
Confidence 7899999999999999996 776554 5777663 5899999999
Q ss_pred cCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCH
Q 007444 235 LLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (603)
Q Consensus 235 ~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~ 301 (603)
... ...+|+||.-|+.-. ....+++||+|| .+..|+++|++ ||+.+|.|+.| |.
T Consensus 407 avG~kR~~~~~~y~kqTlNQLLvEmDGF~-----------qNeGiIvigATN-fpe~LD~AL~RPGRFD~~v~Vp~P-Dv 473 (752)
T KOG0734|consen 407 AVGGKRNPSDQHYAKQTLNQLLVEMDGFK-----------QNEGIIVIGATN-FPEALDKALTRPGRFDRHVTVPLP-DV 473 (752)
T ss_pred hhcccCCccHHHHHHHHHHHHHHHhcCcC-----------cCCceEEEeccC-ChhhhhHHhcCCCccceeEecCCC-Cc
Confidence 762 356788887776322 122579999999 77788999998 99999999965 99
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
..|.+|+...+. .+.+++++--.++ +...-..+.-.+-+++..|.-.
T Consensus 474 ~GR~eIL~~yl~-------------------------------ki~~~~~VD~~ii--ARGT~GFsGAdLaNlVNqAAlk 520 (752)
T KOG0734|consen 474 RGRTEILKLYLS-------------------------------KIPLDEDVDPKII--ARGTPGFSGADLANLVNQAALK 520 (752)
T ss_pred ccHHHHHHHHHh-------------------------------cCCcccCCCHhHh--ccCCCCCchHHHHHHHHHHHHH
Confidence 999999885422 3334433311121 2222334556677899999999
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcC
Q 007444 382 AALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
|+.+|...|++.|++.|-..+|-
T Consensus 521 Aa~dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 521 AAVDGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred HHhcCcccccHHHHhhhhhheee
Confidence 99999999999999999776665
No 38
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.84 E-value=6.3e-20 Score=202.97 Aligned_cols=236 Identities=26% Similarity=0.389 Sum_probs=183.8
Q ss_pred CCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
.++.+++|.+..+..+ .+..+.+...+|||.|++||||+++|+++|...++
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--------------------------- 187 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--------------------------- 187 (469)
T ss_pred cccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC---------------------------
Confidence 3577899998777766 33344566788999999999999999999997652
Q ss_pred cccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHH
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~L 244 (603)
...||+.+.+... +..+||+ +++.++|....+.|++..+++|+||||||+.|+...|..|
T Consensus 188 ------------~~~~~i~i~c~~~~~~~~~~~lfg~---~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L 252 (469)
T PRK10923 188 ------------AKAPFIALNMAAIPKDLIESELFGH---EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRL 252 (469)
T ss_pred ------------CCCCeEeeeCCCCCHHHHHHHhcCC---CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHH
Confidence 2678888877654 4567776 4566677777789999999999999999999999999999
Q ss_pred HHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 245 L~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+.+++++. +.+.|.....+.++.+|+|++.+ .|.++++|++||... .|..|+..+++.||..+..+|....
T Consensus 253 ~~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~~PpLreR~~Di~~l~~~~l~~~ 329 (469)
T PRK10923 253 LRVLADGQ--FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI-RVHLPPLRERREDIPRLARHFLQVA 329 (469)
T ss_pred HHHHhcCc--EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcce-eecCCCcccchhhHHHHHHHHHHHH
Confidence 99999988 55667666667789999999964 578999999999765 6667889999999998887774321
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l-~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
++... ..+.++++++..|..+.|++|+ |++.++++.+ +.+.....|+.+|+..
T Consensus 330 --------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~i~~~---~~~~~~~~i~~~~l~~ 383 (469)
T PRK10923 330 --------------------ARELGVEAKLLHPETEAALTRLAWPGNV---RQLENTCRWL---TVMAAGQEVLIQDLPG 383 (469)
T ss_pred --------------------HHHcCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHHCcH
Confidence 12222 2246999999999999999998 6666665433 3445556899998854
Q ss_pred H
Q 007444 398 A 398 (603)
Q Consensus 398 A 398 (603)
.
T Consensus 384 ~ 384 (469)
T PRK10923 384 E 384 (469)
T ss_pred h
Confidence 3
No 39
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.83 E-value=4.9e-20 Score=212.70 Aligned_cols=231 Identities=22% Similarity=0.262 Sum_probs=178.8
Q ss_pred CCCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
...|.+++|++..++.+ .+..+.....+|||.|++|||||++|++||....+
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------------------------- 425 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------------------------- 425 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--------------------------
Confidence 46789999999888877 34445556789999999999999999999987642
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.+.||+.+.+... +..+||+ +++.++|......|.+..|++|+||||||+.|+..+|..
T Consensus 426 -------------~~~~~v~i~c~~~~~~~~~~~lfg~---~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~ 489 (686)
T PRK15429 426 -------------NNRRMVKMNCAAMPAGLLESDLFGH---ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 489 (686)
T ss_pred -------------CCCCeEEEecccCChhHhhhhhcCc---ccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHH
Confidence 2567777665543 5567886 344555655566789999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
|+.+++++. +.+.|.....+.++.+|+++|.+ .+.|+.+|++||... .|..|+..+++.||..+..+|...
T Consensus 490 L~~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 490 LLRVLQEQE--FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF-PIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred HHHHHHhCC--EEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCee-EEeCCChhhhHhHHHHHHHHHHHH
Confidence 999999987 67778777777889999999964 478999999999887 677899999999998887776432
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDV-AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v-~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~ 392 (603)
. +++....+ .+++++++.|..+.|++|+ |.+.++++.|. .+.....|+.
T Consensus 567 ~--------------------~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~~i~~a~---~~~~~~~i~~ 616 (686)
T PRK15429 567 I--------------------ARRMGRNIDSIPAETLRTLSNMEWPGNV---RELENVIERAV---LLTRGNVLQL 616 (686)
T ss_pred H--------------------HHHcCCCCCCcCHHHHHHHHhCCCCCcH---HHHHHHHHHHH---HhCCCCcccc
Confidence 1 22223333 5999999999999999998 66666664443 3344445554
No 40
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.83 E-value=1.1e-19 Score=205.49 Aligned_cols=285 Identities=23% Similarity=0.281 Sum_probs=191.6
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC-ccc----c
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD-EWE----D 163 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~-~~~----~ 163 (603)
.+..-|++|+||++++..+..++.. ..+++|+|+||||||++++++++.++.-+...-. +--+|.... .+. .
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~-~~~n~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDIL-VYPNPEDPNMPRIVEVPA 88 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEE-EEeCCCCCchHHHHHHHH
Confidence 3457789999999999999887774 3699999999999999999999999864211111 111222111 110 0
Q ss_pred cccccc-------------------------------cc---------------------------ccccc---c--ccc
Q 007444 164 GLDEKA-------------------------------EY---------------------------DTAGN---L--KTQ 180 (603)
Q Consensus 164 ~~~~~i-------------------------------~~---------------------------~~~~~---~--~~~ 180 (603)
.+.+++ .+ +.... + ...
T Consensus 89 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lv~~s~ 168 (608)
T TIGR00764 89 GEGREIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIPRTSIMVPKLLVDNSG 168 (608)
T ss_pred hhchHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcccchhceeeeeecCCC
Confidence 000000 00 00000 0 111
Q ss_pred ccCCCeEEcCCCCccccccccccchhcccc--------CcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKT--------GTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 181 ~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~--------g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
....|||..+. .+...|+|.+. ...+. .....++|+|.+||+|+|||||++.|++..|..|+.+|+++.
T Consensus 169 ~~~~P~v~~~~-~~~~~L~G~i~--~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~ 245 (608)
T TIGR00764 169 KKKAPFVDATG-AHAGALLGDVR--HDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKK 245 (608)
T ss_pred CCCCCEEEeCC-CChHHCcccee--eccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCc
Confidence 24578877432 33467888753 22222 223567999999999999999999999999999999999999
Q ss_pred eeEeeC-----Ce---eeEecCCcEEEEEeCCCC-CCccHHHHhhhc---cccccc--CCCCHHHHHHHHHHHHHHHhhh
Q 007444 253 NIVERE-----GI---SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSAD--LPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 253 ~~v~r~-----G~---s~~~p~~~~lIattNp~e-g~L~~~LldRf~---l~v~v~--~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+.+... |. ....|++|.+|+++|+++ ..++++|++||+ +.+.+. .|.+.+.+.++.......
T Consensus 246 i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~---- 321 (608)
T TIGR00764 246 FPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE---- 321 (608)
T ss_pred EEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----
Confidence 655321 11 234688999999999864 479999999999 555443 455677666664432111
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc-CCCC-----chhHHHHHHHHHHHHHHHcCCCCCcH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-GGCQ-----GHRAELYAARVAKCLAALEGREKVNV 392 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~-~~v~-----s~Ra~i~llr~Ara~Aal~gr~~Vt~ 392 (603)
.+.......+++++++.|.+++.+ .+.. ..|....++|.|..+|..++...|+.
T Consensus 322 --------------------~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ 381 (608)
T TIGR00764 322 --------------------VKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTA 381 (608)
T ss_pred --------------------HHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecH
Confidence 111111227999999999887653 2322 35999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 007444 393 DDLKKAVELVI 403 (603)
Q Consensus 393 eDv~~A~~lvl 403 (603)
+||.+|++...
T Consensus 382 ehV~~Ai~~~~ 392 (608)
T TIGR00764 382 EHVLKAKKLAK 392 (608)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 41
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.83 E-value=1.8e-20 Score=179.14 Aligned_cols=152 Identities=29% Similarity=0.440 Sum_probs=118.4
Q ss_pred ccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 007444 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (603)
Q Consensus 97 IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~ 174 (603)
|||.+..++.+ .+..+.....+|||+|++||||+.+|++||...++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------------------------------- 48 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------------------------------- 48 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--------------------------------
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--------------------------------
Confidence 57888766666 33344456689999999999999999999997653
Q ss_pred ccccccccCCCeEEcCCCCcc-----ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 175 GNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~~-----~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
...||+.++++... ..|||. +++.+.|....+.|+|..|++|+||||||+.|+..+|..|+++|+
T Consensus 49 -------~~~pfi~vnc~~~~~~~~e~~LFG~---~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 49 -------KNGPFISVNCAALPEELLESELFGH---EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp -------TTS-EEEEETTTS-HHHHHHHHHEB---CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred -------ccCCeEEEehhhhhcchhhhhhhcc---ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 36899999887653 467886 345556777778899999999999999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhccc
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAIN 292 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~ 292 (603)
++. +.+-|.....+.++.+|++||.+ .|.|+++|++|+...
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 119 EGK--FTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp HSE--EECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred hch--hccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 998 67778777888899999999964 589999999999765
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.83 E-value=7.1e-20 Score=180.12 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=157.2
Q ss_pred CCCCCCCcccccHHHHHHHHHh---hhcc------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG---AIDR------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la---av~p------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+..+|++||||+++|+...+. +-|| ..++||+|||||||||++|++|++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------------------- 175 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------------------- 175 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-------------------
Confidence 4678899999999999987332 2255 35779999999999999999999875
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEecccccC
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLL 236 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDEi~~l 236 (603)
+.||+.+.......+.+|. |....+ -+..+ +..+|+||||++.+
T Consensus 176 -----------------------kvp~l~vkat~liGehVGd---------gar~Ih-ely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 176 -----------------------KVPLLLVKATELIGEHVGD---------GARRIH-ELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred -----------------------CCceEEechHHHHHHHhhh---------HHHHHH-HHHHHHHhcCCeEEEehhhhhh
Confidence 6788877665555555552 333222 23333 35789999999976
Q ss_pred C------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHH
Q 007444 237 D------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (603)
Q Consensus 237 ~------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r 304 (603)
. .+++|+||.-|+ |. .+++| ++.||+|| .+..|++++.+||.--|++.+| +.++|
T Consensus 223 aLdRryQelRGDVsEiVNALLTelD-gi--~eneG--------VvtIaaTN-~p~~LD~aiRsRFEeEIEF~LP-~~eEr 289 (368)
T COG1223 223 ALDRRYQELRGDVSEIVNALLTELD-GI--KENEG--------VVTIAATN-RPELLDPAIRSRFEEEIEFKLP-NDEER 289 (368)
T ss_pred hhhhhHHHhcccHHHHHHHHHHhcc-Cc--ccCCc--------eEEEeecC-ChhhcCHHHHhhhhheeeeeCC-ChHHH
Confidence 3 367899999987 43 24444 57899999 7888999999999999999976 77888
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHHHHH
Q 007444 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE-LYAARVAKCLAA 383 (603)
Q Consensus 305 ~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~-i~llr~Ara~Aa 383 (603)
.+|++... +... +.+.-. +++++.. ....|+|.. ..+++.|-.-|.
T Consensus 290 ~~ile~y~---------------------------k~~P--lpv~~~-~~~~~~~---t~g~SgRdikekvlK~aLh~Ai 336 (368)
T COG1223 290 LEILEYYA---------------------------KKFP--LPVDAD-LRYLAAK---TKGMSGRDIKEKVLKTALHRAI 336 (368)
T ss_pred HHHHHHHH---------------------------HhCC--CccccC-HHHHHHH---hCCCCchhHHHHHHHHHHHHHH
Confidence 88877431 1221 222222 4455443 344466754 468888888899
Q ss_pred HcCCCCCcHHHHHHHHHH
Q 007444 384 LEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 384 l~gr~~Vt~eDv~~A~~l 401 (603)
.+|++.|+.+|++.|++-
T Consensus 337 ~ed~e~v~~edie~al~k 354 (368)
T COG1223 337 AEDREKVEREDIEKALKK 354 (368)
T ss_pred HhchhhhhHHHHHHHHHh
Confidence 999999999999999887
No 43
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.83 E-value=1.9e-19 Score=194.88 Aligned_cols=263 Identities=18% Similarity=0.237 Sum_probs=196.0
Q ss_pred CCcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 94 LAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 94 f~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
|..|.|++.+|..+++....- +.-+|+|+|.||||||.+.++....+|+--+..|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsG------------- 410 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSG------------- 410 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecC-------------
Confidence 788999999999998766521 2234999999999999999999999985222111
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
...+...|.-.+ -+.-.+|...++.|.|..|++||..|||+++++..-+
T Consensus 411 -----------------------------kaSSaAGLTaaV--vkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq 459 (764)
T KOG0480|consen 411 -----------------------------KASSAAGLTAAV--VKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ 459 (764)
T ss_pred -----------------------------cccccccceEEE--EecCCCCceeeecCcEEEccCceEEechhcccChHhH
Confidence 111222222221 2333457778889999999999999999999999899
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
.+|+.+|+...+.|.+.|..-+++++..+||+.||-.| .++++++.||++.+.+-...+...-..|..
T Consensus 460 vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~ 539 (764)
T KOG0480|consen 460 VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIAR 539 (764)
T ss_pred HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHH
Confidence 99999999999999999999999999999999999655 478999999999865543334444344444
Q ss_pred HHHHHHhhhHHHh-hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc----C----C----CCchhHHHHHHH
Q 007444 310 IATQFQERSNEVF-KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----G----G----CQGHRAELYAAR 376 (603)
Q Consensus 310 ~~~~f~~~~~~~~-~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~----~----~----v~s~Ra~i~llr 376 (603)
..+.....-.... ..-.-..+.++.+|..||...| .++.++-+.|.+.... . + ..+.|.+..++|
T Consensus 540 hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P--~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR 617 (764)
T KOG0480|consen 540 HILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP--KLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR 617 (764)
T ss_pred HHHHHhccccccccccccccHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH
Confidence 4433321111111 1112234678999999996665 5777777777775432 1 1 237899999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 377 VAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
++.|+|.++-++.||.+|+++|+++.
T Consensus 618 LsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 618 LSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 99999999999999999999999986
No 44
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.82 E-value=3.5e-19 Score=196.20 Aligned_cols=236 Identities=24% Similarity=0.312 Sum_probs=182.0
Q ss_pred CCCCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
..+..++|.+.....+ .+..+.....+|||.|++||||+++|+++|....+
T Consensus 140 ~~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--------------------------- 192 (457)
T PRK11361 140 WQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR--------------------------- 192 (457)
T ss_pred ccccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC---------------------------
Confidence 3456789988766666 23344445678999999999999999999987642
Q ss_pred cccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHH
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~L 244 (603)
...||+.+++... +..+||+ +++.++|....++|++..|++|+||||||+.|+..+|..|
T Consensus 193 ------------~~~~~~~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L 257 (457)
T PRK11361 193 ------------AKGPFIKVNCAALPESLLESELFGH---EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKL 257 (457)
T ss_pred ------------CCCCeEEEECCCCCHHHHHHHhcCC---CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHH
Confidence 2567777766654 4567776 3556667777789999999999999999999999999999
Q ss_pred HHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 245 L~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+.+++++. +.+.|....++.++.+|+|+|.+ +|.++++|++||... .+..|+..+++.||..+...|....
T Consensus 258 ~~~l~~~~--~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~-~i~~ppLreR~~di~~l~~~~l~~~ 334 (457)
T PRK11361 258 LRILQERE--FERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVI-HLILPPLRDRREDISLLANHFLQKF 334 (457)
T ss_pred HHHHhcCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhchhhHHHHHHHHHHHH
Confidence 99999987 56777777788899999999975 578999999999875 7778899999999988776664321
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l-~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
+.... +.+.+++++++.|..+.|++|+ |.+.++++.|- .+.....|+.+|+..
T Consensus 335 --------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~~~~~~---~~~~~~~i~~~~l~~ 388 (457)
T PRK11361 335 --------------------SSENQRDIIDIDPMAMSLLTAWSWPGNI---RELSNVIERAV---VMNSGPIIFSEDLPP 388 (457)
T ss_pred --------------------HHHcCCCCCCcCHHHHHHHHcCCCCCcH---HHHHHHHHHHH---HhCCCCcccHHHChH
Confidence 11222 2357999999999999999998 66666664433 345556788888764
Q ss_pred H
Q 007444 398 A 398 (603)
Q Consensus 398 A 398 (603)
.
T Consensus 389 ~ 389 (457)
T PRK11361 389 Q 389 (457)
T ss_pred h
Confidence 3
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.6e-18 Score=173.11 Aligned_cols=228 Identities=21% Similarity=0.244 Sum_probs=166.5
Q ss_pred cccCCCCCCCCcccccHHHHHHHHH---hhh--ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLL---GAI--DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l---aav--~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
....-+|..|+++|||+++|..|.+ |+. +-...||||+||||.||||||..+|.++.- ||
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~------ 80 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---------NL------ 80 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---------Ce------
Confidence 3344678999999999999998833 222 235788999999999999999999999851 22
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCCH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDE 238 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~~ 238 (603)
++ ..+|.++-+ ..|.+ +|.. -.+-||||||||++++
T Consensus 81 --------k~------------tsGp~leK~-----gDlaa------------------iLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 81 --------KI------------TSGPALEKP-----GDLAA------------------ILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred --------Ee------------cccccccCh-----hhHHH------------------HHhcCCcCCeEEEehhhhcCh
Confidence 00 122222111 11111 1111 1356999999999999
Q ss_pred HHHHHHHHHHHcCceeEee-CC---eeeEec-CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 239 GISNLLLNVLTEGVNIVER-EG---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 239 ~~~~~LL~~l~~g~~~v~r-~G---~s~~~p-~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
.+-+.|..+|++-.+-+-- .| .+++++ ..|.+||+|. ..|.|..+|.|||++...++. +..++..+|+.+.-
T Consensus 118 ~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-r~G~lt~PLrdRFGi~~rlef-Y~~~eL~~Iv~r~a- 194 (332)
T COG2255 118 AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-RAGMLTNPLRDRFGIIQRLEF-YTVEELEEIVKRSA- 194 (332)
T ss_pred hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc-ccccccchhHHhcCCeeeeec-CCHHHHHHHHHHHH-
Confidence 9999999999997765421 12 233333 2699999999 889999999999999988885 67887777766431
Q ss_pred HHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHH
Q 007444 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (603)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~e 393 (603)
.+-++.++++....|+..+. . ..|-..+++|-.+..|...|...|+.+
T Consensus 195 ----------------------------~~l~i~i~~~~a~eIA~rSR---G-TPRIAnRLLrRVRDfa~V~~~~~I~~~ 242 (332)
T COG2255 195 ----------------------------KILGIEIDEEAALEIARRSR---G-TPRIANRLLRRVRDFAQVKGDGDIDRD 242 (332)
T ss_pred ----------------------------HHhCCCCChHHHHHHHHhcc---C-CcHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 12257899988777755542 2 689999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 007444 394 DLKKAVELVILP 405 (603)
Q Consensus 394 Dv~~A~~lvl~h 405 (603)
-..+|+.+....
T Consensus 243 ia~~aL~~L~Vd 254 (332)
T COG2255 243 IADKALKMLDVD 254 (332)
T ss_pred HHHHHHHHhCcc
Confidence 888888875443
No 46
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-19 Score=195.38 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=168.9
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeecccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSI 150 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~ 150 (603)
.+.+..+..+|++|-|++++|+.|..+...| ..+|||||||||||||++||+++...
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---------- 492 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---------- 492 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------
Confidence 3445567899999999999999997555444 14679999999999999999999975
Q ss_pred ccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCce
Q 007444 151 ANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGV 227 (603)
Q Consensus 151 ~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gI 227 (603)
+.+|+.+......++|+|.- |+.++. +|.+| ...|
T Consensus 493 --------------------------------~~nFlsvkgpEL~sk~vGeS--Er~ir~--------iF~kAR~~aP~I 530 (693)
T KOG0730|consen 493 --------------------------------GMNFLSVKGPELFSKYVGES--ERAIRE--------VFRKARQVAPCI 530 (693)
T ss_pred --------------------------------cCCeeeccCHHHHHHhcCch--HHHHHH--------HHHHHhhcCCeE
Confidence 67899999888999999952 444433 33333 3579
Q ss_pred EEecccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccc
Q 007444 228 LYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLS 294 (603)
Q Consensus 228 L~IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~ 294 (603)
||+|||+.+ .+.+++.||..|+.... -.+++|||+|| -+..++++|++ ||+..|+
T Consensus 531 iFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~-----------~k~V~ViAATN-Rpd~ID~ALlRPGRlD~iiy 598 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA-----------LKNVLVIAATN-RPDMIDPALLRPGRLDRIIY 598 (693)
T ss_pred EehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc-----------cCcEEEEeccC-ChhhcCHHHcCCcccceeEe
Confidence 999999976 35678888888874331 13689999999 78889999999 9999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHH
Q 007444 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (603)
Q Consensus 295 v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~l 374 (603)
|+ ++|.+.|.+|++.. .++..+++++ .|.+++......|.+....+
T Consensus 599 Vp-lPD~~aR~~Ilk~~-------------------------------~kkmp~~~~v--dl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 599 VP-LPDLEARLEILKQC-------------------------------AKKMPFSEDV--DLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ec-CccHHHHHHHHHHH-------------------------------HhcCCCCccc--cHHHHHHHhccCChHHHHHH
Confidence 99 45999999997743 2245666662 23344444455577888888
Q ss_pred HHHHHHHHHHcC--CCCCcHHHHHHHHHHH
Q 007444 375 ARVAKCLAALEG--REKVNVDDLKKAVELV 402 (603)
Q Consensus 375 lr~Ara~Aal~g--r~~Vt~eDv~~A~~lv 402 (603)
.+-|...|..+. ...|+.+|+.+|++.+
T Consensus 645 Cq~A~~~a~~e~i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 645 CQEAALLALRESIEATEITWQHFEEALKAV 674 (693)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHhh
Confidence 888887776653 5678999999998865
No 47
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.80 E-value=6e-19 Score=186.39 Aligned_cols=264 Identities=22% Similarity=0.275 Sum_probs=193.5
Q ss_pred CcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
.+|.|++++|+||++.++.- +.-+|+|.|.||++||.|.+++.++.|+-.
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgv------------------ 403 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGV------------------ 403 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccc------------------
Confidence 47999999999998877621 112399999999999999999999987421
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
|+... +..=|-+.....-|.+ +|+..++-|.|..|++||..|||++++++.--.
T Consensus 404 --------YTTGr-------GSSGVGLTAAVmkDpv-----------TgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 404 --------YTTGR-------GSSGVGLTAAVMKDPV-----------TGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred --------eecCC-------CCCccccchhhhcCCC-----------CCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 21110 1111112222223333 345566668999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
++..+|+...+.|...|+..++.++..++|+.||.-| .|+.+||+||++..-+..-++.+.-..+.+.
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHH
Confidence 9999999999999999999999999999999999543 4889999999998766545565554444443
Q ss_pred HHHH---HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHH-------H---cCCCCchhHHHHHHHH
Q 007444 311 ATQF---QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA-------L---RGGCQGHRAELYAARV 377 (603)
Q Consensus 311 ~~~f---~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a-------~---~~~v~s~Ra~i~llr~ 377 (603)
+... .+.|....+. -+-+.++..|..++...| .++++..+++.... | .....+.|-++.++|.
T Consensus 538 iTyVH~H~~qp~~~fep--l~~~~mR~yI~~ak~~~P--~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRl 613 (721)
T KOG0482|consen 538 ITYVHQHEEQPPLDFEP--LDPNLMRRYISLAKRKNP--VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRL 613 (721)
T ss_pred hHhhhccCCCCCccCCC--CCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHH
Confidence 3222 2223211111 223578899999998877 46666666665532 2 1235589999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
+.|+|.|.-.+.|..+||++|++|+-.-+
T Consensus 614 s~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 614 STALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 99999999999999999999999974443
No 48
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.79 E-value=5.5e-18 Score=184.97 Aligned_cols=261 Identities=19% Similarity=0.197 Sum_probs=187.9
Q ss_pred CcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
..|.|+|++|++|++.+..- +.-+|||+|.||||||.+.+++|+++|+-....
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTS--------------- 493 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTS--------------- 493 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeec---------------
Confidence 35899999999998877621 113599999999999999999999998532211
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
. .+.+...|..++ .+...++..+.+-|.|..+++||..|||+|+|++...+
T Consensus 494 -----------G----------------kGsSavGLTayV--trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS 544 (804)
T KOG0478|consen 494 -----------G----------------KGSSAVGLTAYV--TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS 544 (804)
T ss_pred -----------C----------------CccchhcceeeE--EecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH
Confidence 1 111222222221 23344566677889999999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
.|+++|+...+.|...|+-.+++++.-|||+.||-++ .|++.||+||++++-+-.++|...-..+...
T Consensus 545 vLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHH
Confidence 9999999999999999999999999999999998543 4889999999998655544443311222222
Q ss_pred H--HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc--------C-CCCchhHHHHHHHHHH
Q 007444 311 A--TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR--------G-GCQGHRAELYAARVAK 379 (603)
Q Consensus 311 ~--~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~--------~-~v~s~Ra~i~llr~Ar 379 (603)
. ++++.. +......-+...++..|..|++... ..+++++.+.+.+.... + .....|.+..++|.+.
T Consensus 625 ivsLy~e~~--~~~~~~~~d~~~lr~yi~yArk~i~-p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsE 701 (804)
T KOG0478|consen 625 IVALYPETG--EKQGSEAIDMNLLRDYIRYARKNIH-PALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSE 701 (804)
T ss_pred HHHhccccc--ccchhHHHhHHHHHHHHHHHhccCC-ccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Confidence 1 222211 1111112223457888888887654 45777777666654321 1 2345799999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHH
Q 007444 380 CLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
++|.......|...||++|+.|.
T Consensus 702 ahak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 702 AHAKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred HHHHhhcccccchhhHHHHHHHH
Confidence 99999999999999999998874
No 49
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.79 E-value=4.9e-19 Score=193.87 Aligned_cols=222 Identities=27% Similarity=0.294 Sum_probs=171.1
Q ss_pred cccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccc
Q 007444 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (603)
Q Consensus 98 vGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~ 175 (603)
.+.+.-.+++ ....+.....+|||.|++||||-.++|+||....
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~---------------------------------- 361 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE---------------------------------- 361 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc----------------------------------
Confidence 4556555555 3445555678999999999999999999998763
Q ss_pred cccccccCCCeEEcCCC-----CccccccccccchhccccCccc-ccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 176 NLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 176 ~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~-~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
...|||.++++ ..+++|||+. .+.++|... -..|++.+|++|+||+|||..||-.+|..||.+++
T Consensus 362 ------~~gpfvAvNCaAip~~liesELFGy~---~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~ 432 (606)
T COG3284 362 ------AAGPFVAVNCAAIPEALIESELFGYV---AGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQ 432 (606)
T ss_pred ------ccCCeEEEEeccchHHhhhHHHhccC---ccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHh
Confidence 26788876555 5577888875 566666653 45799999999999999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
+|+ |.+-|.+. .+.++.||++|+.+ .|.|+++|++|++.. .|..|+..++...|.-+...+
T Consensus 433 e~~--v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~-~i~lP~lr~R~d~~~~l~~~~--------- 499 (606)
T COG3284 433 EGV--VTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAF-VITLPPLRERSDRIPLLDRIL--------- 499 (606)
T ss_pred hCc--eeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCe-eeccCchhcccccHHHHHHHH---------
Confidence 999 77788888 89999999999974 589999999999887 677787777655553332211
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
. ++.--...++++++..|..+.|++|+ |.+.++++. ++++.+...|...|+-
T Consensus 500 --------------~-~~~~~~~~l~~~~~~~l~~~~WPGNi---rel~~v~~~---~~~l~~~g~~~~~dlp 551 (606)
T COG3284 500 --------------K-RENDWRLQLDDDALARLLAYRWPGNI---RELDNVIER---LAALSDGGRIRVSDLP 551 (606)
T ss_pred --------------H-HccCCCccCCHHHHHHHHhCCCCCcH---HHHHHHHHH---HHHcCCCCeeEcccCC
Confidence 1 11223468999999999999999998 777777754 4556666667666654
No 50
>PRK15115 response regulator GlrR; Provisional
Probab=99.79 E-value=3.6e-18 Score=187.61 Aligned_cols=231 Identities=23% Similarity=0.320 Sum_probs=175.0
Q ss_pred cccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
.++|.+.....+. ...+.....+|+|.|++||||+++|+++|...++
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r------------------------------- 183 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR------------------------------- 183 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------------------------------
Confidence 5777776554442 2233345568999999999999999999997652
Q ss_pred cccccccccCCCeEEcCCCCcc-----ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 174 AGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~-----~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
...||+.+++.... ..+||. +++.++|....+.|++..+++|+||||||+.|+...|..|+.++
T Consensus 184 --------~~~~f~~i~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l 252 (444)
T PRK15115 184 --------ASKPFIAINCGALPEQLLESELFGH---ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVL 252 (444)
T ss_pred --------CCCCeEEEeCCCCCHHHHHHHhcCC---CcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHH
Confidence 25678887766543 456665 34566677777889999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
+++. +.+.|.+...+.++.+|+|++.+ .|.++++|+.||... .|..|+..+++.||..+..+|....
T Consensus 253 ~~~~--~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~-~i~lPpLr~R~eDi~~l~~~~l~~~---- 325 (444)
T PRK15115 253 QERK--VRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV-SLKIPALAERTEDIPLLANHLLRQA---- 325 (444)
T ss_pred hhCC--EEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee-eecCCChHhccccHHHHHHHHHHHH----
Confidence 9998 46667777777789999999864 478999999999886 7778889998889987776664321
Q ss_pred hhhhHhhHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~-v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
++..... ..+++++++.|..+.|++|+ |.+.++++.|. .+.....|+.+|+..
T Consensus 326 ----------------~~~~~~~~~~~~~~a~~~L~~~~WpgNv---reL~~~i~~~~---~~~~~~~i~~~~l~~ 379 (444)
T PRK15115 326 ----------------AERHKPFVRAFSTDAMKRLMTASWPGNV---RQLVNVIEQCV---ALTSSPVISDALVEQ 379 (444)
T ss_pred ----------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCccChhhhhh
Confidence 1222223 35999999999999999998 66667665543 344555788888754
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.78 E-value=3.4e-18 Score=194.03 Aligned_cols=249 Identities=23% Similarity=0.252 Sum_probs=169.4
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
.....++.+|++|+||+.+++++...+.++...+++|+||+|||||++|+.++....... +..+.
T Consensus 144 ~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~---~~~~~------------ 208 (615)
T TIGR02903 144 AQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLK---HTPFA------------ 208 (615)
T ss_pred HhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhcc---CCccc------------
Confidence 333457899999999999999886555566677899999999999999999998763210 00000
Q ss_pred ccccccccccccccccccCCCeEEcCCCCc-------cccccccccc------hhc-cccCcccccccchhcccCceEEe
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVT-------EDRLIGSVDV------EES-VKTGTTVFQPGLLAEAHRGVLYI 230 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~-------~~~l~G~ldl------~~~-l~~g~~~~~~Gll~~A~~gIL~I 230 (603)
.+.+|+.+.+... ...++|.+.- .+. ...|......|++..+++|+|||
T Consensus 209 -----------------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~L 271 (615)
T TIGR02903 209 -----------------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFI 271 (615)
T ss_pred -----------------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEE
Confidence 1344555443221 1123443210 000 12244556789999999999999
Q ss_pred cccccCCHHHHHHHHHHHHcCceeEeeCCe---------------eeEecCCcEEEEEeCCCCCCccHHHHhhhcccccc
Q 007444 231 DEINLLDEGISNLLLNVLTEGVNIVEREGI---------------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSA 295 (603)
Q Consensus 231 DEi~~l~~~~~~~LL~~l~~g~~~v~r~G~---------------s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v 295 (603)
||++.|+...|+.|+.+++++.+.+..+-. ....+.+|++|++|+.+...+.++|.+||..+ .+
T Consensus 272 DEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i-~~ 350 (615)
T TIGR02903 272 DEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FF 350 (615)
T ss_pred eccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEE-Ee
Confidence 999999999999999999998865542210 11245678999888767788999999999865 55
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ll 375 (603)
. |.+.++..+|++... .. . .+.+++++++.|..++|++ |..++++
T Consensus 351 ~-pls~edi~~Il~~~a---------------------------~~-~-~v~ls~eal~~L~~ys~~g-----Rraln~L 395 (615)
T TIGR02903 351 E-PLTPEDIALIVLNAA---------------------------EK-I-NVHLAAGVEELIARYTIEG-----RKAVNIL 395 (615)
T ss_pred C-CCCHHHHHHHHHHHH---------------------------HH-c-CCCCCHHHHHHHHHCCCcH-----HHHHHHH
Confidence 5 667777766655321 11 1 3568999999999998843 6677777
Q ss_pred HHHHHHHHHc--------CCCCCcHHHHHHHHHH
Q 007444 376 RVAKCLAALE--------GREKVNVDDLKKAVEL 401 (603)
Q Consensus 376 r~Ara~Aal~--------gr~~Vt~eDv~~A~~l 401 (603)
..+..++... +...|+.+||++++..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 396 ADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 6665554222 2236899999987653
No 52
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.78 E-value=4.5e-18 Score=187.76 Aligned_cols=235 Identities=26% Similarity=0.375 Sum_probs=179.0
Q ss_pred CCcccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 94 LAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 94 f~~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
+..++|.+.....+. +..+.....+++|.|++||||+++|+++|...++
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~----------------------------- 183 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR----------------------------- 183 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-----------------------------
Confidence 456889887766662 3334445678999999999999999999987652
Q ss_pred cccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHH
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~ 246 (603)
...||+.+++... +..+||+ +++.++|......|++..|++|+||||||+.|+..+|..|+.
T Consensus 184 ----------~~~~~~~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~ 250 (463)
T TIGR01818 184 ----------ANGPFIALNMAAIPKDLIESELFGH---EKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLR 250 (463)
T ss_pred ----------CCCCeEEEeCCCCCHHHHHHHhcCC---CCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHH
Confidence 2568888776655 3456775 455666766667899999999999999999999999999999
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+++++. +.+.|.....+.++.+|+|+|.+ .+.++++|+.||... .+..|+..+++.||..+..+|....
T Consensus 251 ~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr~R~~Di~~l~~~~l~~~-- 325 (463)
T TIGR01818 251 VLADGE--FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVI-RIHLPPLRERREDIPRLARHFLALA-- 325 (463)
T ss_pred HHhcCc--EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcc-eecCCCcccchhhHHHHHHHHHHHH--
Confidence 999988 55667666677788999999964 478999999999864 6677889998899988877664321
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l-~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+.... ....+++++++.|..+.|++|+ |.+.++++.+. .+.....|+.+|+...+
T Consensus 326 ------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~~~~~~---~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 326 ------------------ARELDVEPKLLDPEALERLKQLRWPGNV---RQLENLCRWLT---VMASGDEVLVSDLPAEL 381 (463)
T ss_pred ------------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHHH---HhCCCCcccHHhchHHH
Confidence 12221 2246999999999999999998 66666664443 34445679999986543
No 53
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.78 E-value=6e-18 Score=190.96 Aligned_cols=285 Identities=23% Similarity=0.304 Sum_probs=188.5
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc-c---
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW-E--- 162 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~-~--- 162 (603)
...++..|++|+||++++..|..++.. ..+++|+||||||||++++++++.++.... ....+--+|.+...+ .
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l~~~~~-~~~~~~~np~~~~~~~~~~v 99 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELLPKEEL-QDILVYPNPEDPNNPKIRTV 99 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHcChHhH-HHheEeeCCCcchHHHHHHH
Confidence 345678899999999999999876664 368999999999999999999999874321 111122223321111 1
Q ss_pred -ccccccc---------------------------ccc---c----------------------c-cc-----c--cccc
Q 007444 163 -DGLDEKA---------------------------EYD---T----------------------A-GN-----L--KTQI 181 (603)
Q Consensus 163 -~~~~~~i---------------------------~~~---~----------------------~-~~-----~--~~~~ 181 (603)
....+.| .+. . . .. + ....
T Consensus 100 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~ 179 (637)
T PRK13765 100 PAGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADK 179 (637)
T ss_pred HHhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCC
Confidence 0000000 000 0 0 00 0 0122
Q ss_pred cCCCeEEcCCCCccccccccccch---h-ccccCcc-cccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEe
Q 007444 182 ARSPFVQIPLGVTEDRLIGSVDVE---E-SVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (603)
Q Consensus 182 ~~~pfv~l~~~~~~~~l~G~ldl~---~-~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~ 256 (603)
...|||..+. .+...|||.+.-. . +++++.. ..++|+|.+||+|+|||||++.|++..|..|+.+|+++.+.+
T Consensus 180 ~~aPvi~~~~-p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i- 257 (637)
T PRK13765 180 KTAPFVDATG-AHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPI- 257 (637)
T ss_pred CCCCEEEeCC-CCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEe-
Confidence 4678887644 4478999987532 1 3434443 448999999999999999999999999999999999999554
Q ss_pred eCCe----------eeEecCCcEEEEEeCCCC-CCccHHHHhhhc---ccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 257 REGI----------SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 257 r~G~----------s~~~p~~~~lIattNp~e-g~L~~~LldRf~---l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|. ....|++|.+|+++|++. ..++++|++||. ..+.+.. ..+ ++.+....|.
T Consensus 258 -~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~--~~~---d~~e~~~~~~------- 324 (637)
T PRK13765 258 -TGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRD--TME---DTPENRRKLV------- 324 (637)
T ss_pred -cccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEccc--ccC---CCHHHHHHHH-------
Confidence 333 455788999999999864 567899999997 3444331 111 1222111221
Q ss_pred hhhhHhhHHHHHHHHH-HHHhccccCCCHHHHHHHHHHHHc-CCCCc-----hhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 323 KMVEEETDLAKTQIIL-AREYLKDVAIGREQLKYLVMEALR-GGCQG-----HRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~-ar~~l~~v~is~~~l~~L~~~a~~-~~v~s-----~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
..+.. .........++++++..|++++.+ .|..+ .|....++|.|..+|..++++.|+.+|+
T Consensus 325 -----------~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v 393 (637)
T PRK13765 325 -----------RFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHV 393 (637)
T ss_pred -----------HHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHH
Confidence 11111 111112347999999999887653 44422 6788889999999999999999999999
Q ss_pred HHHHH
Q 007444 396 KKAVE 400 (603)
Q Consensus 396 ~~A~~ 400 (603)
.+|..
T Consensus 394 ~~a~~ 398 (637)
T PRK13765 394 LEAKK 398 (637)
T ss_pred HHHHH
Confidence 98874
No 54
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.77 E-value=7.3e-18 Score=184.80 Aligned_cols=231 Identities=24% Similarity=0.322 Sum_probs=178.2
Q ss_pred cccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
.++|.+.....+. +..+.+...+|+|+|++||||+++|++++...++
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~------------------------------- 188 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR------------------------------- 188 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------------------------------
Confidence 4677776665552 3344556788999999999999999999987652
Q ss_pred cccccccccCCCeEEcCCCCcc-----ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 174 AGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~-----~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
...||+.+++.... ..+||. +++.++|......|++..|++|+||||||+.|+...|..|+.++
T Consensus 189 --------~~~~~i~~~c~~~~~~~~~~~lfg~---~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l 257 (441)
T PRK10365 189 --------SEKPLVTLNCAALNESLLESELFGH---EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAI 257 (441)
T ss_pred --------CCCCeeeeeCCCCCHHHHHHHhcCC---CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHH
Confidence 25788888877654 345665 34555666666789999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
+++. +.+.|.+..++.++.+|++|+.+ .+.+++.|+.||... .+..|+..+++.||..+...|...
T Consensus 258 ~~~~--~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~-~i~~ppLreR~~Di~~l~~~~l~~----- 329 (441)
T PRK10365 258 QERE--VQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV-AIEVPSLRQRREDIPLLAGHFLQR----- 329 (441)
T ss_pred ccCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhcchhHHHHHHHHHHH-----
Confidence 9998 67778888888899999998864 467999999999876 777789999999998887766432
Q ss_pred hhhhHhhHHHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLK-DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~-~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
+ ++...+ .+.+++++++.|..+.|++|+ |.+.++++.+-. +.....|+.+|+..
T Consensus 330 -------------~--~~~~~~~~~~~~~~a~~~L~~~~wpgN~---reL~~~~~~~~~---~~~~~~i~~~~l~~ 384 (441)
T PRK10365 330 -------------F--AERNRKAVKGFTPQAMDLLIHYDWPGNI---RELENAVERAVV---LLTGEYISERELPL 384 (441)
T ss_pred -------------H--HHHhCCCCCCcCHHHHHHHHhCCCCCHH---HHHHHHHHHHHH---hCCCCccchHhCch
Confidence 1 122222 245999999999999999998 677676654432 34455788888753
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.9e-17 Score=173.75 Aligned_cols=222 Identities=19% Similarity=0.205 Sum_probs=157.1
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhh-----ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
.+.+|..|++++|+++.+..|..... +....++||+||||||||++|+++++.+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~------------------- 77 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV------------------- 77 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------------------
Confidence 34678899999999999998843222 234568999999999999999999998741
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh-cccCceEEecccccCCHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~-~A~~gIL~IDEi~~l~~~~ 240 (603)
.+.......... .+ |+. +++. ...+++||||||+.++...
T Consensus 78 -----------------------~~~~~~~~~~~~--~~--~l~------------~~l~~l~~~~vl~IDEi~~l~~~~ 118 (328)
T PRK00080 78 -----------------------NIRITSGPALEK--PG--DLA------------AILTNLEEGDVLFIDEIHRLSPVV 118 (328)
T ss_pred -----------------------CeEEEecccccC--hH--HHH------------HHHHhcccCCEEEEecHhhcchHH
Confidence 111111000000 00 111 1111 1346799999999999999
Q ss_pred HHHHHHHHHcCceeE-eeCCeee-----EecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 241 SNLLLNVLTEGVNIV-EREGISF-----KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v-~r~G~s~-----~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
++.|+..|++....+ ...|... ..| .|++|++|| ..+.+.++|.+||+..+.+. +++.+++.+|+.....
T Consensus 119 ~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~-~~~~l~~~L~sRf~~~~~l~-~~~~~e~~~il~~~~~- 194 (328)
T PRK00080 119 EEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATT-RAGLLTSPLRDRFGIVQRLE-FYTVEELEKIVKRSAR- 194 (328)
T ss_pred HHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecC-CcccCCHHHHHhcCeeeecC-CCCHHHHHHHHHHHHH-
Confidence 999999998875432 2222211 223 588999999 45678899999999988888 6788887777663211
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eD 394 (603)
...+.++++++.+|+..|.. ..|....+++.+...|...+...|+.++
T Consensus 195 ----------------------------~~~~~~~~~~~~~ia~~~~G----~pR~a~~~l~~~~~~a~~~~~~~I~~~~ 242 (328)
T PRK00080 195 ----------------------------ILGVEIDEEGALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGVITKEI 242 (328)
T ss_pred ----------------------------HcCCCcCHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 12578999999999877632 4599999998888888887777899999
Q ss_pred HHHHHHHH
Q 007444 395 LKKAVELV 402 (603)
Q Consensus 395 v~~A~~lv 402 (603)
+..++...
T Consensus 243 v~~~l~~~ 250 (328)
T PRK00080 243 ADKALDML 250 (328)
T ss_pred HHHHHHHh
Confidence 99998653
No 56
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.76 E-value=2.1e-17 Score=171.79 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=119.4
Q ss_pred HHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccc
Q 007444 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQI 181 (603)
Q Consensus 102 ~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (603)
+..++++.+.. ..++|||.|+||||||++++.|+..+.
T Consensus 52 ~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~---------------------------------------- 89 (327)
T TIGR01650 52 ATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLN---------------------------------------- 89 (327)
T ss_pred HHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHC----------------------------------------
Confidence 34444544443 257899999999999999999999873
Q ss_pred cCCCeEE--cCCCCccccccccccchhccccCc--ccccccchhcc--cCceEEecccccCCHHHHHHHHHHHHc-Ccee
Q 007444 182 ARSPFVQ--IPLGVTEDRLIGSVDVEESVKTGT--TVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTE-GVNI 254 (603)
Q Consensus 182 ~~~pfv~--l~~~~~~~~l~G~ldl~~~l~~g~--~~~~~Gll~~A--~~gIL~IDEi~~l~~~~~~~LL~~l~~-g~~~ 254 (603)
.+|+. ++..++...++|..-+ .+..|. ..+++|.|..| ++++||+||||++++++++.|+.+|+. +.+.
T Consensus 90 --~~~~rV~~~~~l~~~DliG~~~~--~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~ 165 (327)
T TIGR01650 90 --WPCVRVNLDSHVSRIDLVGKDAI--VLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLT 165 (327)
T ss_pred --CCeEEEEecCCCChhhcCCCcee--eccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEE
Confidence 34444 4555666778996311 122343 57889999776 677899999999999999999999994 5766
Q ss_pred EeeCCeeeEecCCcEEEEEeCCCC---------C--CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 255 VEREGISFKHPCKPLLIATYNPEE---------G--VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 255 v~r~G~s~~~p~~~~lIattNp~e---------g--~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
+...+..+.....|.+|||+||.+ | .+.++++|||.+.+.+++| +.+...+|+..
T Consensus 166 i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp-~~e~E~~Il~~ 231 (327)
T TIGR01650 166 LLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL-EHDNEAAIVLA 231 (327)
T ss_pred ECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC-CHHHHHHHHHh
Confidence 655454443333799999999954 1 4789999999998889976 56666667653
No 57
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.76 E-value=2.3e-18 Score=154.90 Aligned_cols=125 Identities=28% Similarity=0.384 Sum_probs=85.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeE--EcCCCCcc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFV--QIPLGVTE 195 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv--~l~~~~~~ 195 (603)
||||.|+||+|||++|+++++.+. ..|. +....+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------------------------------------------~~f~RIq~tpdllP 38 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------------------------------------------LSFKRIQFTPDLLP 38 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------------------------------------------EEEEE--TT--H
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------------------------------------------CceeEEEecCCCCc
Confidence 799999999999999999999874 2332 34555777
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (603)
..++|..-+. ..++...+.+|.+. .+|+++||||+.++.+|++||++|+++.+. -+|.++..|..|+||||+|
T Consensus 39 sDi~G~~v~~--~~~~~f~~~~GPif---~~ill~DEiNrappktQsAlLeam~Er~Vt--~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 39 SDILGFPVYD--QETGEFEFRPGPIF---TNILLADEINRAPPKTQSALLEAMEERQVT--IDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHEEEEEE--TTTTEEEEEE-TT----SSEEEEETGGGS-HHHHHHHHHHHHHSEEE--ETTEEEE--SS-EEEEEE-
T ss_pred ccceeeeeec--cCCCeeEeecChhh---hceeeecccccCCHHHHHHHHHHHHcCeEE--eCCEEEECCCcEEEEEecC
Confidence 8888863221 22356667788886 469999999999999999999999999954 4699999999999999999
Q ss_pred CCCC----CccHHHHhhhcc
Q 007444 276 PEEG----VVREHLLDRIAI 291 (603)
Q Consensus 276 p~eg----~L~~~LldRf~l 291 (603)
|.+. .|+++++|||-+
T Consensus 112 p~e~~Gty~Lpea~~DRF~~ 131 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLDRFMM 131 (131)
T ss_dssp TT--S------HHHHTTSSE
T ss_pred ccccCceecCCHHHhccccC
Confidence 9653 689999999953
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=6.5e-18 Score=176.04 Aligned_cols=221 Identities=21% Similarity=0.225 Sum_probs=151.2
Q ss_pred cccccCCCCCCCCcccccHHHHH---HHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~---aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
++...+-+|.+|++||||+++.- .|.-+.-.-...+++|||||||||||+|+.|+...
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------------------- 72 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------------------- 72 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-------------------
Confidence 35666778999999999998763 22222223356789999999999999999999875
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
+..|..++... .|.-|+...+..... ......+-|||||||++++..
T Consensus 73 -----------------------~~~f~~~sAv~-----~gvkdlr~i~e~a~~-----~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 73 -----------------------NAAFEALSAVT-----SGVKDLREIIEEARK-----NRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred -----------------------CCceEEecccc-----ccHHHHHHHHHHHHH-----HHhcCCceEEEEehhhhcChh
Confidence 45676665432 222222222211110 011123569999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
.|+.||..+++|. +++||+|.-++ -++.++|++|.-+. ++. |.+.++...++.+....+.
T Consensus 120 QQD~lLp~vE~G~---------------iilIGATTENPsF~ln~ALlSR~~vf-~lk-~L~~~di~~~l~ra~~~~~-- 180 (436)
T COG2256 120 QQDALLPHVENGT---------------IILIGATTENPSFELNPALLSRARVF-ELK-PLSSEDIKKLLKRALLDEE-- 180 (436)
T ss_pred hhhhhhhhhcCCe---------------EEEEeccCCCCCeeecHHHhhhhhee-eee-cCCHHHHHHHHHHHHhhhh--
Confidence 9999999999997 46888887555 47899999998777 565 7788877777765332211
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l-~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
+... ..+.++++++++|+..+ +. ..|..+++++.+..++.-.. ..+.+++++
T Consensus 181 ---------------------rgl~~~~~~i~~~a~~~l~~~s---~G-D~R~aLN~LE~~~~~~~~~~--~~~~~~l~~ 233 (436)
T COG2256 181 ---------------------RGLGGQIIVLDEEALDYLVRLS---NG-DARRALNLLELAALSAEPDE--VLILELLEE 233 (436)
T ss_pred ---------------------cCCCcccccCCHHHHHHHHHhc---Cc-hHHHHHHHHHHHHHhcCCCc--ccCHHHHHH
Confidence 1111 23568999999998875 33 46999999988876653322 334777776
Q ss_pred HHHH
Q 007444 398 AVEL 401 (603)
Q Consensus 398 A~~l 401 (603)
.+.-
T Consensus 234 ~l~~ 237 (436)
T COG2256 234 ILQR 237 (436)
T ss_pred HHhh
Confidence 6543
No 59
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.9e-18 Score=177.05 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=126.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhccC------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
..+...|++|.|..++|+.|.-|++-|- =+|||++||||||||+||++++.++
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc--------------- 269 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC--------------- 269 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---------------
Confidence 3466889999999999999987777662 1459999999999999999999875
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
...|+++..+...+.|-|.- | ....=||..| ...+|||||
T Consensus 270 ---------------------------~tTFFNVSsstltSKwRGeS--E--------KlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 270 ---------------------------GTTFFNVSSSTLTSKWRGES--E--------KLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred ---------------------------cCeEEEechhhhhhhhccch--H--------HHHHHHHHHHHHhCCceeehhh
Confidence 67899999999999998852 2 2222355555 357999999
Q ss_pred cccC------------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCC
Q 007444 233 INLL------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (603)
Q Consensus 233 i~~l------------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~ 300 (603)
|+.| +..+-+-||..|+.-....+ ....++|+|+|| .+++++++|++||..+|.|++| +
T Consensus 313 IDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-------~~k~VmVLAATN-~PWdiDEAlrRRlEKRIyIPLP-~ 383 (491)
T KOG0738|consen 313 IDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-------NSKVVMVLAATN-FPWDIDEALRRRLEKRIYIPLP-D 383 (491)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-------cceeEEEEeccC-CCcchHHHHHHHHhhheeeeCC-C
Confidence 9877 34566778888874322222 112368899999 9999999999999999999976 8
Q ss_pred HHHHHHHHHHH
Q 007444 301 FEDRVAAVGIA 311 (603)
Q Consensus 301 ~e~r~eI~~~~ 311 (603)
.+.|..+++..
T Consensus 384 ~~~R~~Li~~~ 394 (491)
T KOG0738|consen 384 AEARSALIKIL 394 (491)
T ss_pred HHHHHHHHHHh
Confidence 88888887754
No 60
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.5e-18 Score=188.43 Aligned_cols=220 Identities=22% Similarity=0.246 Sum_probs=166.7
Q ss_pred CCCCCCCcccccHHHHHHHHH---hhhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLL---GAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l---aav~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
...++|.+|.|.+++|..|.- -.-|| -.+||||.||||||||+||+++|.+.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---------------- 368 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------------- 368 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------------
Confidence 345899999999999999931 12233 25889999999999999999999875
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi 233 (603)
+.||+.+..+...+.++|. | ......++..|. ..|+|||||
T Consensus 369 --------------------------gVPF~svSGSEFvE~~~g~---------~-asrvr~lf~~ar~~aP~iifidei 412 (774)
T KOG0731|consen 369 --------------------------GVPFFSVSGSEFVEMFVGV---------G-ASRVRDLFPLARKNAPSIIFIDEI 412 (774)
T ss_pred --------------------------CCceeeechHHHHHHhccc---------c-hHHHHHHHHHhhccCCeEEEeccc
Confidence 7899999999999999995 3 233346777664 479999999
Q ss_pred ccCC---------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 234 NLLD---------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 234 ~~l~---------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
+... ...+|+||.-||.-. .. ..++++|+|| ..+.|+++|++ ||+..|.++
T Consensus 413 da~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~---------~~--~~vi~~a~tn-r~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 413 DAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE---------TS--KGVIVLAATN-RPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccccccccccccCCCChHHHHHHHHHHHHhcCCc---------CC--CcEEEEeccC-CccccCHHhcCCCccccceecc
Confidence 8763 245677777776332 11 3689999999 78888999998 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007444 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (603)
Q Consensus 297 ~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr 376 (603)
. ++...|.+|++... ..+.++++... +..++......+.-...+++.
T Consensus 481 ~-p~~~~r~~i~~~h~-------------------------------~~~~~~~e~~d-l~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 481 L-PDVKGRASILKVHL-------------------------------RKKKLDDEDVD-LSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred C-CchhhhHHHHHHHh-------------------------------hccCCCcchhh-HHHHHhcCCCCcHHHHHhhhh
Confidence 5 48999999987532 23445433333 233555444445566778888
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 377 VAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
.|.-+|+-++..+|+..|+..|++.++..
T Consensus 528 eaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 528 EAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 88889999999999999999999977664
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=7.9e-17 Score=168.34 Aligned_cols=214 Identities=22% Similarity=0.233 Sum_probs=149.2
Q ss_pred CCCcccccHHHHHHHHHhhh-----ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 93 PLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
+|++|+||++++..|..... .....+++|+||||||||++|+++++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------- 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------- 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------------------------
Confidence 68999999999998843222 123467999999999999999999988731
Q ss_pred cccccccccccccccCCCeEEcCCC--CccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~--~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
.+...... .....+.+. +. ....+.+||||||+.+++..++.|+
T Consensus 57 -----------------~~~~~~~~~~~~~~~l~~~------l~-----------~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 57 -----------------NLKITSGPALEKPGDLAAI------LT-----------NLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred -----------------CEEEeccchhcCchhHHHH------HH-----------hcccCCEEEEehHhhhCHHHHHHhh
Confidence 11111100 011111111 00 1123579999999999999999999
Q ss_pred HHHHcCceeEe-eCCe-----eeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 246 NVLTEGVNIVE-REGI-----SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 246 ~~l~~g~~~v~-r~G~-----s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.+|++....+- ..|. ....| .+++|++|| ..+.+.++|.+||+.++.+. |++.++..+++.....
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~-~~~~l~~~l~sR~~~~~~l~-~l~~~e~~~il~~~~~------ 173 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATT-RAGMLTSPLRDRFGIILRLE-FYTVEELAEIVSRSAG------ 173 (305)
T ss_pred HHHhhhheeeeeccCccccceeecCC-CeEEEEecC-CccccCHHHHhhcceEEEeC-CCCHHHHHHHHHHHHH------
Confidence 99987764331 1111 11223 488899988 55788999999999888887 6778877777653211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
...+.++++++.+|+..+.. ..|..+.+++.+..+|...+...|+.+++..++
T Consensus 174 -----------------------~~~~~~~~~al~~ia~~~~G----~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 174 -----------------------LLNVEIEPEAALEIARRSRG----TPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred -----------------------HhCCCcCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 12568999999999887532 348888888888878877777789999999998
Q ss_pred HH
Q 007444 400 EL 401 (603)
Q Consensus 400 ~l 401 (603)
..
T Consensus 227 ~~ 228 (305)
T TIGR00635 227 EM 228 (305)
T ss_pred HH
Confidence 87
No 62
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.74 E-value=2.1e-17 Score=178.71 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=138.4
Q ss_pred cccccHHHHHHHHHhhhcc----------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 96 AVVGQDAIKTALLLGAIDR----------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav~p----------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.|+||+++|++|..++.++ ..++|||+||||||||++|++||..+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------------------- 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------------------- 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-------------------
Confidence 3899999999996655321 34789999999999999999999876
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCC-ccccccccccchhccccCcccccccchhcccCceEEecccccCCH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~ 238 (603)
+.||+.+.... ++..++|. |++..+. +......+.+..+.+||||||||+.++.
T Consensus 133 -----------------------~~pf~~id~~~l~~~gyvG~-d~e~~l~-~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 133 -----------------------DVPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred -----------------------CCCceecchhhcccCCcccc-hHHHHHH-HHHHhccccHHHcCCcEEEEechhhhcc
Confidence 45677665543 34566664 2222211 1111234667788899999999999975
Q ss_pred --------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCC---------------------
Q 007444 239 --------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGV--------------------- 280 (603)
Q Consensus 239 --------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~--------------------- 280 (603)
.+|+.||.+|+...+.+...|....--.++++|.|+|. +.|.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~ 267 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA 267 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence 48999999998666666444433222246888888887 1111
Q ss_pred ---------------------------ccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHH
Q 007444 281 ---------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAK 333 (603)
Q Consensus 281 ---------------------------L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~ 333 (603)
|.|+|+.||+.+|.+. |.+.+....|+..... .+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~-~L~~~~L~~Il~~~~~-----------------~l~ 329 (412)
T PRK05342 268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE-ELDEEALVRILTEPKN-----------------ALV 329 (412)
T ss_pred ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC-CCCHHHHHHHHHHHHH-----------------HHH
Confidence 3566666666665554 5566666666542111 111
Q ss_pred HHHH-HHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007444 334 TQII-LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (603)
Q Consensus 334 ~~I~-~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr 376 (603)
.++. ......-.+.++++++++|++.+...+. |.|.+..+++
T Consensus 330 ~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~-GAR~Lrriie 372 (412)
T PRK05342 330 KQYQKLFEMDGVELEFTDEALEAIAKKAIERKT-GARGLRSILE 372 (412)
T ss_pred HHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCC-CCchHHHHHH
Confidence 1111 1112223467999999999998765443 5565554443
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=4.5e-17 Score=166.80 Aligned_cols=214 Identities=19% Similarity=0.230 Sum_probs=142.5
Q ss_pred CCcccccHHHHHHHH--Hhh-------------hccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 94 LAAVVGQDAIKTALL--LGA-------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 94 f~~IvGq~~~k~aL~--laa-------------v~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
+.+++|++.+|..+. .+. ..+...+|||+||||||||++|++++..+.....+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~------------ 72 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL------------ 72 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc------------
Confidence 567999999998882 111 12345679999999999999999999876321110
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCC-
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD- 237 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~- 237 (603)
....++.+........++|.. .....+++..+.+|||||||++.|.
T Consensus 73 -----------------------~~~~~v~~~~~~l~~~~~g~~----------~~~~~~~~~~a~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 73 -----------------------SKGHLIEVERADLVGEYIGHT----------AQKTREVIKKALGGVLFIDEAYSLAR 119 (261)
T ss_pred -----------------------cCCceEEecHHHhhhhhccch----------HHHHHHHHHhccCCEEEEechhhhcc
Confidence 133556555443334444431 1112357778889999999999975
Q ss_pred -------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHH
Q 007444 238 -------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVA 306 (603)
Q Consensus 238 -------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~e 306 (603)
.+.++.|+..|++.. .++++|++.++.+. .++++|.+||...|.++ +++.+++.+
T Consensus 120 ~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~-~~~~~el~~ 185 (261)
T TIGR02881 120 GGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP-DYTVEELME 185 (261)
T ss_pred CCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEEC-CCCHHHHHH
Confidence 457889999998753 24677777665442 46789999999888887 678888888
Q ss_pred HHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH------cCCCCchhHHHHHHHHHHH
Q 007444 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL------RGGCQGHRAELYAARVAKC 380 (603)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~------~~~v~s~Ra~i~llr~Ara 380 (603)
|+..... . ....++++++.+|.++.. .......|...+++..|..
T Consensus 186 Il~~~~~---------------------------~--~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 186 IAERMVK---------------------------E--REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHHHHH---------------------------H--cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 8764311 1 245688888888876532 1223356888888888766
Q ss_pred HHHHc--CCCCCcHHHH
Q 007444 381 LAALE--GREKVNVDDL 395 (603)
Q Consensus 381 ~Aal~--gr~~Vt~eDv 395 (603)
..+.. +...++.+|+
T Consensus 237 ~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 237 RQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHhccCCCCHHHH
Confidence 55432 3344555554
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=2.4e-17 Score=177.99 Aligned_cols=224 Identities=19% Similarity=0.247 Sum_probs=151.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.+.|++|.|.+..++.|.-... . ....+|||+||||||||++|++++..+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-------------- 189 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-------------- 189 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--------------
Confidence 3467889999999998888743221 1 124679999999999999999999876
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
..+|+.+..+.....++|. +.. ....++..| ..+|||||
T Consensus 190 ----------------------------~~~~i~v~~~~l~~~~~g~---------~~~-~i~~~f~~a~~~~p~IlfiD 231 (389)
T PRK03992 190 ----------------------------NATFIRVVGSELVQKFIGE---------GAR-LVRELFELAREKAPSIIFID 231 (389)
T ss_pred ----------------------------CCCEEEeehHHHhHhhccc---------hHH-HHHHHHHHHHhcCCeEEEEe
Confidence 3456666554444444553 111 111233333 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+ +.+++..|+.++.... |.. ...++.||+||| ....++++|++ ||+..|.++ +
T Consensus 232 EiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn-~~~~ld~allRpgRfd~~I~v~-~ 301 (389)
T PRK03992 232 EIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATN-RIDILDPAILRPGRFDRIIEVP-L 301 (389)
T ss_pred chhhhhcccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecC-ChhhCCHHHcCCccCceEEEEC-C
Confidence 99987 3556666766664322 110 112578999999 55688999996 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCH-HHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~-~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
|+.++|.+|+.... ....++. ..+..|+.. ....+.+....+++.
T Consensus 302 P~~~~R~~Il~~~~-------------------------------~~~~~~~~~~~~~la~~---t~g~sgadl~~l~~e 347 (389)
T PRK03992 302 PDEEGRLEILKIHT-------------------------------RKMNLADDVDLEELAEL---TEGASGADLKAICTE 347 (389)
T ss_pred CCHHHHHHHHHHHh-------------------------------ccCCCCCcCCHHHHHHH---cCCCCHHHHHHHHHH
Confidence 58999999976321 1122222 123344443 334466777788888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCc
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (603)
|...|..+++..|+.+|+.+|+.-+...+.
T Consensus 348 A~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 348 AGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 888888889999999999999998866443
No 65
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.74 E-value=2.8e-17 Score=177.39 Aligned_cols=266 Identities=18% Similarity=0.212 Sum_probs=190.5
Q ss_pred cccccHHHHHHHHHhhh-----ccCC-------CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 96 AVVGQDAIKTALLLGAI-----DREI-------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav-----~p~~-------~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
.|.|++.+|+|+.++.. +|+. -+|||.|.||||||.+.+++++..++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R--------------------- 508 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR--------------------- 508 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc---------------------
Confidence 57899999999987765 3332 23999999999999999999988753
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.+++-..+++...|..++ .+..-+++..++.|.|..|++||.+|||++.++++--..
T Consensus 509 ---------------------AV~tTGqGASavGLTa~v--~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS 565 (854)
T KOG0477|consen 509 ---------------------AVFTTGQGASAVGLTAYV--RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS 565 (854)
T ss_pred ---------------------eeEeccCCccccceeEEE--eeCCccceeeeccCeEEEccCceEEeehhhhhcccccch
Confidence 233334444444444332 222223455667899999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
+..+|+...+.|...|+..++.+++.+|||.||-.| .|.++++.||++.+.|..-.|..+-..+.+.+
T Consensus 566 IHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 566 IHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred HHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHH
Confidence 999999999999999999999999999999999544 46789999999988777544544433333332
Q ss_pred H--HHHhhhHHHh----------h-hhhHhhHHHHHHHHHHHHhcc-c-cCCCHHHHHHHH-HHH---HcCC--CCchhH
Q 007444 312 T--QFQERSNEVF----------K-MVEEETDLAKTQIILAREYLK-D-VAIGREQLKYLV-MEA---LRGG--CQGHRA 370 (603)
Q Consensus 312 ~--~f~~~~~~~~----------~-~~~~~~~~l~~~I~~ar~~l~-~-v~is~~~l~~L~-~~a---~~~~--v~s~Ra 370 (603)
. ++..+|.... . ...-.++.|++.|..|++... . -.++.+-+..+. ++- ...| ..+.|-
T Consensus 646 V~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRH 725 (854)
T KOG0477|consen 646 VGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRH 725 (854)
T ss_pred HHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHH
Confidence 2 3333332200 0 011345688999999998753 1 234433333222 222 1222 126799
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 371 ELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 371 ~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
...++|.+.|+|.+.-+++|+.+|+..|+..++--
T Consensus 726 ieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 726 IESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999887653
No 66
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.73 E-value=6.1e-18 Score=156.21 Aligned_cols=128 Identities=34% Similarity=0.448 Sum_probs=100.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~ 197 (603)
+|||+||||||||++++.+++.+.. +.-.+.++...+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~----------------------------------------~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR----------------------------------------PVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC----------------------------------------EEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------ceEEEEecccccccc
Confidence 6899999999999999999998731 233466788899999
Q ss_pred ccccccchhccccCcccccccchhcc--cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecC------CcE
Q 007444 198 LIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC------KPL 269 (603)
Q Consensus 198 l~G~ldl~~~l~~g~~~~~~Gll~~A--~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~------~~~ 269 (603)
|+|.+++. .+...+.+|.+..+ +++|+||||||++++++++.|+.+++++.+.+...+.....+. +|.
T Consensus 41 l~g~~~~~----~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (139)
T PF07728_consen 41 LIGSYDPS----NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFR 116 (139)
T ss_dssp HHCEEET-----TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EE
T ss_pred ceeeeeec----ccccccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceE
Confidence 99998765 57778888888876 7899999999999999999999999999877655454444443 499
Q ss_pred EEEEeCCCC---CCccHHHHhhh
Q 007444 270 LIATYNPEE---GVVREHLLDRI 289 (603)
Q Consensus 270 lIattNp~e---g~L~~~LldRf 289 (603)
+|+|+|+.. ..++++|+|||
T Consensus 117 ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 117 IIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEESSST--TTTTCHHHHTT-
T ss_pred EEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999876 57999999998
No 67
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.71 E-value=9.5e-17 Score=176.79 Aligned_cols=216 Identities=20% Similarity=0.223 Sum_probs=149.0
Q ss_pred CCCCCCcccccHHHHHHHHHh--h-----h---ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLG--A-----I---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~la--a-----v---~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
....|++|.|.+.+|..|... . . -+..+||||+||||||||++|++++..+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------------------- 283 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------------------- 283 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-------------------
Confidence 457799999999999877321 1 1 1235789999999999999999999986
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh---cccCceEEecccccC
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLL 236 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~---~A~~gIL~IDEi~~l 236 (603)
+.||+.+..+...+.++|.- ++.+ .-++. ...++|||||||+.+
T Consensus 284 -----------------------~~~~~~l~~~~l~~~~vGes--e~~l--------~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 284 -----------------------QLPLLRLDVGKLFGGIVGES--ESRM--------RQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred -----------------------CCCEEEEEhHHhcccccChH--HHHH--------HHHHHHHHhcCCcEEEehhhhhh
Confidence 56888887766666666641 1111 11222 225689999999865
Q ss_pred CH------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHH
Q 007444 237 DE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (603)
Q Consensus 237 ~~------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e 302 (603)
-. .++..|+..|++.. ..+++||||| ....|+++|++ ||+..+.++.| +.+
T Consensus 331 ~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------------~~V~vIaTTN-~~~~Ld~allR~GRFD~~i~v~lP-~~~ 395 (489)
T CHL00195 331 FSNSESKGDSGTTNRVLATFITWLSEKK-------------SPVFVVATAN-NIDLLPLEILRKGRFDEIFFLDLP-SLE 395 (489)
T ss_pred hccccCCCCchHHHHHHHHHHHHHhcCC-------------CceEEEEecC-ChhhCCHHHhCCCcCCeEEEeCCc-CHH
Confidence 21 34566777776432 2578999999 78889999997 99999999965 899
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHH
Q 007444 303 DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLA 382 (603)
Q Consensus 303 ~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~A 382 (603)
+|.+|++..+.- ..+ ....+..+..|+..+ ...+......++..|...|
T Consensus 396 eR~~Il~~~l~~---------------------------~~~-~~~~~~dl~~La~~T---~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 396 EREKIFKIHLQK---------------------------FRP-KSWKKYDIKKLSKLS---NKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHHhh---------------------------cCC-CcccccCHHHHHhhc---CCCCHHHHHHHHHHHHHHH
Confidence 999998753211 000 012223344554443 3446677777777777777
Q ss_pred HHcCCCCCcHHHHHHHHHHHcC
Q 007444 383 ALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 383 al~gr~~Vt~eDv~~A~~lvl~ 404 (603)
..+++ .++.+|+..|+.-+.+
T Consensus 445 ~~~~~-~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 445 FYEKR-EFTTDDILLALKQFIP 465 (489)
T ss_pred HHcCC-CcCHHHHHHHHHhcCC
Confidence 76665 5999999999887654
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.71 E-value=1.4e-16 Score=177.56 Aligned_cols=217 Identities=22% Similarity=0.280 Sum_probs=146.0
Q ss_pred CCCCCCCcccccHHHHHHHHHhh---hc---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGA---ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laa---v~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
.+.+.|++|+|++++|..+.-.. .+ +...|+||+||||||||++|++|+..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------------- 112 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 112 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------------
Confidence 45788999999999998773211 11 224579999999999999999999875
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi 233 (603)
..+|+.++.....+.+.|. +.... ..++..| .++|||||||
T Consensus 113 --------------------------~~~~~~i~~~~~~~~~~g~---------~~~~l-~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 113 --------------------------GVPFFSISGSDFVEMFVGV---------GASRV-RDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred --------------------------CCCeeeccHHHHHHHHhcc---------cHHHH-HHHHHHHHhcCCCEEEEech
Confidence 4567766654444444442 11111 1233333 3479999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccC
Q 007444 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (603)
Q Consensus 234 ~~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~ 297 (603)
+.+.. .+++.||..|+.-. . ..+++||+||| ....++++|++ ||+..|.+..
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~---~--------~~~v~vI~aTn-~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---T--------NTGVIVIAATN-RPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhcccc---C--------CCCeEEEEecC-ChhhcCHHHhcCCcceEEEEcCC
Confidence 88632 34566666665321 1 12478999999 66788999997 9999999985
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCC-CHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007444 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAAR 376 (603)
Q Consensus 298 p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~i-s~~~l~~L~~~a~~~~v~s~Ra~i~llr 376 (603)
++.++|.+|++.... ...+ ++..+..++. .....+.+....+++
T Consensus 225 -Pd~~~R~~il~~~l~-------------------------------~~~~~~~~~l~~la~---~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 225 -PDIKGREEILKVHAK-------------------------------NKKLAPDVDLKAVAR---RTPGFSGADLANLLN 269 (495)
T ss_pred -CCHHHHHHHHHHHHh-------------------------------cCCCCcchhHHHHHH---hCCCCCHHHHHHHHH
Confidence 588999999764311 1112 1222333433 333345667777777
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
.|...|...+...|+.+|+..|+..+..
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 7777777788889999999999997764
No 69
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=172.09 Aligned_cols=221 Identities=16% Similarity=0.221 Sum_probs=146.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHhh----hcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laa----v~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.++|++|.|.+..|..|.-+. .+| ...+|||+||||||||++|++++..+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-------------- 203 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-------------- 203 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--------------
Confidence 356789999999999888773322 122 24679999999999999999999876
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~ID 231 (603)
..+|+.+........++|. +.... ..++.. ...+|||||
T Consensus 204 ----------------------------~~~fi~i~~s~l~~k~~ge---------~~~~l-r~lf~~A~~~~P~ILfID 245 (398)
T PTZ00454 204 ----------------------------TATFIRVVGSEFVQKYLGE---------GPRMV-RDVFRLARENAPSIIFID 245 (398)
T ss_pred ----------------------------CCCEEEEehHHHHHHhcch---------hHHHH-HHHHHHHHhcCCeEEEEE
Confidence 3455555443333444443 11111 112222 245799999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+. ..++..+...+..-. |.. ...++.+|+||| ....++++|++ ||+..|.++.
T Consensus 246 EID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN-~~d~LDpAllR~GRfd~~I~~~~- 315 (398)
T PTZ00454 246 EVDSIATKRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPL- 315 (398)
T ss_pred CHhhhccccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecC-CchhCCHHHcCCCcccEEEEeCC-
Confidence 999762 234444444443211 110 112578999999 67789999998 9999999984
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|++.... ...+..+ .+..++.. ....+.+....+++.
T Consensus 316 P~~~~R~~Il~~~~~-------------------------------~~~l~~dvd~~~la~~---t~g~sgaDI~~l~~e 361 (398)
T PTZ00454 316 PDRRQKRLIFQTITS-------------------------------KMNLSEEVDLEDFVSR---PEKISAADIAAICQE 361 (398)
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCCCCcccCHHHHHHH---cCCCCHHHHHHHHHH
Confidence 588889888764311 1122221 12333332 333467778888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
|...|...++..|+.+|+.+|+..+..
T Consensus 362 A~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 362 AGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 988888899999999999999998754
No 70
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=1.8e-16 Score=164.18 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=128.4
Q ss_pred cccccHHHHHHHHH--hh-----------hcc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 96 AVVGQDAIKTALLL--GA-----------IDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 96 ~IvGq~~~k~aL~l--aa-----------v~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
+++|.+++|+.+.- +. +.+ ...||||+||||||||++|++++..+......
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-------------- 88 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-------------- 88 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc--------------
Confidence 58999999998721 11 011 13479999999999999999999877421110
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccC----
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l---- 236 (603)
...+|+.+........++|.- . ....+++.++.+|+|||||++.|
T Consensus 89 ---------------------~~~~~v~v~~~~l~~~~~g~~---------~-~~~~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 89 ---------------------RKGHLVSVTRDDLVGQYIGHT---------A-PKTKEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred ---------------------ccceEEEecHHHHhHhhcccc---------h-HHHHHHHHHccCcEEEEechhhhccCC
Confidence 134677766543333455531 0 11246788889999999999977
Q ss_pred -----CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 237 -----~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
+.++++.|+..|+++. .++++|++++++. ..+.++|.+||...|.++ |++.+++.+|
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp-~l~~edl~~I 203 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFP-DYSEAELLVI 203 (284)
T ss_pred CccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC-CcCHHHHHHH
Confidence 4678899999998764 2567888877542 235799999999998987 6677777777
Q ss_pred HHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHH-------HHcCCCCchhHHHHHHHHH
Q 007444 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME-------ALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 308 ~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~-------a~~~~v~s~Ra~i~llr~A 378 (603)
+..... +. ...++++++..+..+ .|.+|+ |...++++.+
T Consensus 204 ~~~~l~---------------------------~~--~~~l~~~a~~~L~~~l~~~~~~~~~GN~---R~lrn~ve~~ 249 (284)
T TIGR02880 204 AGLMLK---------------------------EQ--QYRFSAEAEEAFADYIALRRTQPHFANA---RSIRNAIDRA 249 (284)
T ss_pred HHHHHH---------------------------Hh--ccccCHHHHHHHHHHHHHhCCCCCCChH---HHHHHHHHHH
Confidence 553211 00 135777777777776 466666 5555555444
No 71
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=1.9e-16 Score=172.10 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=146.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHhh----hcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laa----v~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
+.+..+|.+|.|.+..+..|.-+. ..| ...+|||+||||||||++|++++..+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el-------------- 241 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET-------------- 241 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--------------
Confidence 456788999999998888773222 121 24579999999999999999999976
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
..+|+.+........++|. +.. ....+|..| ...|||||
T Consensus 242 ----------------------------~~~fi~V~~seL~~k~~Ge---------~~~-~vr~lF~~A~~~~P~ILfID 283 (438)
T PTZ00361 242 ----------------------------SATFLRVVGSELIQKYLGD---------GPK-LVRELFRVAEENAPSIVFID 283 (438)
T ss_pred ----------------------------CCCEEEEecchhhhhhcch---------HHH-HHHHHHHHHHhCCCcEEeHH
Confidence 3345555433333344443 111 112233333 34699999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+. .+++..|+.++..-. |.. ...++.||++|| ....++++|++ ||+..|.++ +
T Consensus 284 EID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATN-r~d~LDpaLlRpGRfd~~I~~~-~ 353 (438)
T PTZ00361 284 EIDAIGTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIESLDPALIRPGRIDRKIEFP-N 353 (438)
T ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecC-ChHHhhHHhccCCeeEEEEEeC-C
Confidence 998762 234555555543211 110 122578999999 66788999986 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|+..... ...+.++ .+..++..+. ..+......+++.
T Consensus 354 Pd~~~R~~Il~~~~~-------------------------------k~~l~~dvdl~~la~~t~---g~sgAdI~~i~~e 399 (438)
T PTZ00361 354 PDEKTKRRIFEIHTS-------------------------------KMTLAEDVDLEEFIMAKD---ELSGADIKAICTE 399 (438)
T ss_pred CCHHHHHHHHHHHHh-------------------------------cCCCCcCcCHHHHHHhcC---CCCHHHHHHHHHH
Confidence 689999999764211 1222222 1233433332 2245556677888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCc
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (603)
|..+|..+++..|+.+|+..|+.-|+..+.
T Consensus 400 A~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~ 429 (438)
T PTZ00361 400 AGLLALRERRMKVTQADFRKAKEKVLYRKK 429 (438)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHHHhhcc
Confidence 888898899999999999999999876544
No 72
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.69 E-value=3e-16 Score=169.04 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=138.1
Q ss_pred cccccHHHHHHHHHhhh-----------cc-------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 96 AVVGQDAIKTALLLGAI-----------DR-------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav-----------~p-------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
.|+||+++++++..+.. .+ ..++|||.||||||||++|++||..+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------------- 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------------- 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-----------------
Confidence 47999999999966541 11 24679999999999999999999876
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCC-CccccccccccchhccccCcccccccchhcccCceEEecccccC
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l 236 (603)
+.||+.+... .++..++|. |.+..+. ......++.+..+.+||||||||+.+
T Consensus 141 -------------------------~~pf~~~da~~L~~~gyvG~-d~e~~L~-~~~~~~~~~l~~a~~gIV~lDEIdkl 193 (413)
T TIGR00382 141 -------------------------NVPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQKGIIYIDEIDKI 193 (413)
T ss_pred -------------------------CCCeEEechhhccccccccc-cHHHHHH-HHHHhCcccHHhcccceEEecccchh
Confidence 3455544332 234456665 3222221 11123456777889999999999999
Q ss_pred CH--------------HHHHHHHHHHHcCcee-EeeCCeeeEec-CCcEEEEEeCC---CCC------------------
Q 007444 237 DE--------------GISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNP---EEG------------------ 279 (603)
Q Consensus 237 ~~--------------~~~~~LL~~l~~g~~~-v~r~G~s~~~p-~~~~lIattNp---~eg------------------ 279 (603)
+. .+|+.||.+|+ |.+. +...|.. .+| .++++|.|+|. +.|
T Consensus 194 ~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr-~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~ 271 (413)
T TIGR00382 194 SRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGR-KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSI 271 (413)
T ss_pred chhhccccccccccchhHHHHHHHHhh-ccceecccCCCc-cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccc
Confidence 76 69999999996 6543 2333322 233 36888999886 111
Q ss_pred ----------------------------CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHH
Q 007444 280 ----------------------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (603)
Q Consensus 280 ----------------------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (603)
.|.|+|+.|++.++.+. |.+.+...+|+..... .
T Consensus 272 gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~-pL~~~~L~~Il~~~~n-----------------~ 333 (413)
T TIGR00382 272 GFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE-KLDEEALIAILTKPKN-----------------A 333 (413)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC-CCCHHHHHHHHHHHHH-----------------H
Confidence 14567777777776665 6677777666553211 1
Q ss_pred HHHHHHHHH-HhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 332 AKTQIILAR-EYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 332 l~~~I~~ar-~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
+..++.... ...-.+.++++++++|++.+..... |.|.+-.+++.
T Consensus 334 l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~-GAR~Lr~iie~ 379 (413)
T TIGR00382 334 LVKQYQALFKMDNVELDFEEEALKAIAKKALERKT-GARGLRSIVEG 379 (413)
T ss_pred HHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC-CchHHHHHHHH
Confidence 111111111 1122467999999999998776544 66766666543
No 73
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.69 E-value=1.6e-15 Score=162.86 Aligned_cols=262 Identities=20% Similarity=0.211 Sum_probs=186.7
Q ss_pred cccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 96 AVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
.|.|++.+|+|+++..+.- +.-+||+.|.|.|+||.|.|++-+..|..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplA-------------------- 361 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLA-------------------- 361 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccc--------------------
Confidence 5899999999997766521 11239999999999999999998776520
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
|.. -..+.+--.|...+ ...-.+|+++++.|....|++||++|||++.+++--.-+
T Consensus 362 -----I~T-----------------TGRGSSGVGLTAAV--TtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvA 417 (818)
T KOG0479|consen 362 -----IAT-----------------TGRGSSGVGLTAAV--TTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVA 417 (818)
T ss_pred -----ccc-----------------cCCCCCCccceeEE--eeccccchhhhhcCceEEccCceEEehhcccccchhHHH
Confidence 000 00111111111111 011235778888999999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
+..+|+.+.++|...|+..++.+++.|+|+.||--| .|...||.||++.+.+-.-.+.+.-..|-+.+
T Consensus 418 IHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 418 IHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred HHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999999999999999999443 36789999999987655344444434444443
Q ss_pred HHHH---hhh------------------------------HHHhhhhh----------HhhHHHHHHHHHHHHhccccCC
Q 007444 312 TQFQ---ERS------------------------------NEVFKMVE----------EETDLAKTQIILAREYLKDVAI 348 (603)
Q Consensus 312 ~~f~---~~~------------------------------~~~~~~~~----------~~~~~l~~~I~~ar~~l~~v~i 348 (603)
+..- ..- +.|-..|. -..+.++++|..|+.... ..+
T Consensus 498 LRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~-P~L 576 (818)
T KOG0479|consen 498 LRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIK-PKL 576 (818)
T ss_pred HHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcC-ccc
Confidence 3321 100 00100000 011247788988888553 369
Q ss_pred CHHHHHHHHHHHHcCC------------CCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 349 GREQLKYLVMEALRGG------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 349 s~~~l~~L~~~a~~~~------------v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
++++.++|++...... ..+.|-+..++|+|-|+|...-...|+.+|.+.|++|+
T Consensus 577 t~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 577 TQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred cHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 9999999998654321 23679999999999999999999999999999997765
No 74
>CHL00176 ftsH cell division protein; Validated
Probab=99.69 E-value=2.8e-16 Score=178.19 Aligned_cols=217 Identities=19% Similarity=0.253 Sum_probs=147.6
Q ss_pred CCCCCCcccccHHHHHHHHH--hhh-cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLL--GAI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l--aav-~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
..++|++|+|.+++|..+.- ..+ +| ...||||+||||||||++|++++..+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------------- 240 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------------- 240 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----------------
Confidence 46899999999999988722 111 12 24579999999999999999999875
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~ 234 (603)
..||+.+..+.....++|. +.... ..++..| ..+|||||||+
T Consensus 241 -------------------------~~p~i~is~s~f~~~~~g~---------~~~~v-r~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 241 -------------------------EVPFFSISGSEFVEMFVGV---------GAARV-RDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred -------------------------CCCeeeccHHHHHHHhhhh---------hHHHH-HHHHHHHhcCCCcEEEEecch
Confidence 4577776655544444442 11111 1234443 34699999999
Q ss_pred cCC-----------H---HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 235 LLD-----------E---GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 235 ~l~-----------~---~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
.+. + .+++.||..|+.-. -..+++||++|| ....++++|++ ||+..|.+..
T Consensus 286 ~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----------~~~~ViVIaaTN-~~~~LD~ALlRpGRFd~~I~v~l- 352 (638)
T CHL00176 286 AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----------GNKGVIVIAATN-RVDILDAALLRPGRFDRQITVSL- 352 (638)
T ss_pred hhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----------CCCCeeEEEecC-chHhhhhhhhccccCceEEEECC-
Confidence 873 2 34555555554211 112578999999 55568888886 8999999985
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCC-CHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~i-s~~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
|+.++|.+|++.... ...+ ++..+..+ +......+.+....+++.
T Consensus 353 Pd~~~R~~IL~~~l~-------------------------------~~~~~~d~~l~~l---A~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 353 PDREGRLDILKVHAR-------------------------------NKKLSPDVSLELI---ARRTPGFSGADLANLLNE 398 (638)
T ss_pred CCHHHHHHHHHHHHh-------------------------------hcccchhHHHHHH---HhcCCCCCHHHHHHHHHH
Confidence 589999999874321 1122 22333444 333344466788888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
|...|+..+...|+.+|+.+|+..++..
T Consensus 399 Aal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 399 AAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 8878888899999999999999887653
No 75
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-16 Score=170.62 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=128.0
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccC-------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~-------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.++|++|-|+++++..|..+.+.|- ..||||+||||||||+||+++|++.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa--------------- 569 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA--------------- 569 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---------------
Confidence 367889999999999999988777662 4679999999999999999999985
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+..|+.+-......+|+|.- |++++ .+|.+| ..+|||+||
T Consensus 570 ---------------------------g~NFisVKGPELlNkYVGES--ErAVR--------~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 570 ---------------------------GANFISVKGPELLNKYVGES--ERAVR--------QVFQRARASAPCVIFFDE 612 (802)
T ss_pred ---------------------------cCceEeecCHHHHHHHhhhH--HHHHH--------HHHHHhhcCCCeEEEecc
Confidence 67899888888888999963 33332 345555 357999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.| +..++|+||..|+... +|. .+.|||+|| .+..+++++|+ ||+..+.|+. +
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---~R~--------gV~viaATN-RPDiIDpAiLRPGRlDk~LyV~l-P 679 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLE---ERR--------GVYVIAATN-RPDIIDPAILRPGRLDKLLYVGL-P 679 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccc---ccc--------ceEEEeecC-CCcccchhhcCCCccCceeeecC-C
Confidence 9988 3468999999998543 222 568999999 77888999998 9999999995 5
Q ss_pred CHHHHHHHHHHH
Q 007444 300 TFEDRVAAVGIA 311 (603)
Q Consensus 300 ~~e~r~eI~~~~ 311 (603)
+.++|.+|++..
T Consensus 680 n~~eR~~ILK~~ 691 (802)
T KOG0733|consen 680 NAEERVAILKTI 691 (802)
T ss_pred CHHHHHHHHHHH
Confidence 899999998854
No 76
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.68 E-value=3.5e-16 Score=167.77 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=144.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.+.|++|.|.+..++.|.-... +| ...+|||+||||||||++|++++..+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------------- 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------------- 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-------------
Confidence 3567889999999999888843332 21 135699999999999999999998763
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
.+|+.+........++|. +.. ....++..+ ..+|||||
T Consensus 182 -----------------------------~~~~~v~~~~l~~~~~g~---------~~~-~i~~~f~~a~~~~p~il~iD 222 (364)
T TIGR01242 182 -----------------------------ATFIRVVGSELVRKYIGE---------GAR-LVREIFELAKEKAPSIIFID 222 (364)
T ss_pred -----------------------------CCEEecchHHHHHHhhhH---------HHH-HHHHHHHHHHhcCCcEEEhh
Confidence 345544332222333332 110 111223222 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
|++.+ +..++..|...+..-. |. ....++.+|+||| ....+++++++ ||+..|.++.
T Consensus 223 EiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn-~~~~ld~al~r~grfd~~i~v~~- 292 (364)
T TIGR01242 223 EIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATN-RPDILDPALLRPGRFDRIIEVPL- 292 (364)
T ss_pred hhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecC-ChhhCChhhcCcccCceEEEeCC-
Confidence 99987 3445556666654321 10 0112678999999 55678899986 9999989984
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|+..... ...+.++ .+..|+..+ ...+.+....+++.
T Consensus 293 P~~~~r~~Il~~~~~-------------------------------~~~l~~~~~~~~la~~t---~g~sg~dl~~l~~~ 338 (364)
T TIGR01242 293 PDFEGRLEILKIHTR-------------------------------KMKLAEDVDLEAIAKMT---EGASGADLKAICTE 338 (364)
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCCCCccCCHHHHHHHc---CCCCHHHHHHHHHH
Confidence 589999999763211 1122211 134444443 33466777788889
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
|...|...++..|+.+|+.+|+.-+
T Consensus 339 A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 339 AGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHh
Confidence 9999999999999999999998765
No 77
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.6e-16 Score=173.06 Aligned_cols=221 Identities=21% Similarity=0.256 Sum_probs=165.2
Q ss_pred CCCCCCCcccccHHHHHHHHHh---hhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
...++|.++.|.+++|..|.-. +-+| -..||||+||||||||+|||+++.+.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---------------- 207 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 207 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------------
Confidence 3568999999999999988321 2233 24779999999999999999999874
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi 233 (603)
+.||+.++.+.+.+.++|. |+.+.+ -++.+|+ .+|+|||||
T Consensus 208 --------------------------~VPFf~iSGS~FVemfVGv---------GAsRVR-dLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 208 --------------------------GVPFFSISGSDFVEMFVGV---------GASRVR-DLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred --------------------------CCCceeccchhhhhhhcCC---------CcHHHH-HHHHHhhccCCCeEEEehh
Confidence 7899999999999999996 665544 4777775 589999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccC
Q 007444 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (603)
Q Consensus 234 ~~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~ 297 (603)
+.... +++|.||..||.- . -...+++|++|| .+.-++++|++ ||+..|.|+.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF---------~--~~~gviviaaTN-RpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF---------G--GNEGVIVIAATN-RPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccC---------C--CCCceEEEecCC-CcccchHhhcCCCCcceeeecCC
Confidence 98743 4677777777632 1 112578999999 77788899998 9999999996
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 298 p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
| |...|.+|++.... ++.+++++- +..++...-..+.-.+.+++..
T Consensus 320 P-Di~gRe~IlkvH~~-------------------------------~~~l~~~Vd--l~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 320 P-DIKGREQILKVHAK-------------------------------NKPLAEDVD--LKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred c-chhhHHHHHHHHhh-------------------------------cCCCCCcCC--HHHHhhhCCCcccchHhhhHHH
Confidence 5 88999999773211 223332221 1112333333345567788888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCc
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (603)
|.-+|+..++..|+..|+.+|...++..=.
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~drv~~G~e 395 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAIDRVIAGPE 395 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHHHHhcCcC
Confidence 899999999999999999999999988543
No 78
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.6e-15 Score=170.70 Aligned_cols=230 Identities=20% Similarity=0.206 Sum_probs=142.7
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC---CCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~---~~~ 160 (603)
+..|+++..|++||||+++++.|.-........| +||+|++|||||++++.|++.+ ||.... +..
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-----------nCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-----------NCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCccCCCCCCCc
Confidence 4567899999999999999999966554334455 5999999999999999999987 343221 222
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
-|..|..... + ....++++.... . .|.-++...+. . ..+.+ ...+..|+||||++.|+.+.
T Consensus 75 ~C~sCr~I~~----G------~h~DviEIDAas--~--rgVDdIReLIe-~-a~~~P---~~gr~KVIIIDEah~LT~~A 135 (830)
T PRK07003 75 VCRACREIDE----G------RFVDYVEMDAAS--N--RGVDEMAALLE-R-AVYAP---VDARFKVYMIDEVHMLTNHA 135 (830)
T ss_pred ccHHHHHHhc----C------CCceEEEecccc--c--ccHHHHHHHHH-H-HHhcc---ccCCceEEEEeChhhCCHHH
Confidence 3444443110 0 012345553321 1 12111111110 0 00111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+|.||..|++.. .++.||.+|| +...|.+.|++|+-.+ .+. +...++..+.++....
T Consensus 136 ~NALLKtLEEPP-------------~~v~FILaTt-d~~KIp~TIrSRCq~f-~Fk-~Ls~eeIv~~L~~Il~------- 192 (830)
T PRK07003 136 FNAMLKTLEEPP-------------PHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPAGHIVSHLERILG------- 192 (830)
T ss_pred HHHHHHHHHhcC-------------CCeEEEEEEC-ChhhccchhhhheEEE-ecC-CcCHHHHHHHHHHHHH-------
Confidence 999999999742 2567777777 6778889999999544 666 4455554444332211
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
...+.++++.+..|+..+ +. +.|..++++..+.++ +...|+.++|..
T Consensus 193 ----------------------~EgI~id~eAL~lIA~~A---~G-smRdALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 193 ----------------------EERIAFEPQALRLLARAA---QG-SMRDALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred ----------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 124678888888887765 22 568888876544432 223466665544
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.7e-15 Score=164.86 Aligned_cols=236 Identities=21% Similarity=0.190 Sum_probs=147.3
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
.++..+++|..|++|+||++++..|..+..+...+| +||+||+|||||++|+.+++.+ ||.......+
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-----------nce~~~~~~p 74 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-----------NCENPIGNEP 74 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-----------CcccccCccc
Confidence 445667899999999999999999876666555555 8999999999999999999987 3432111223
Q ss_pred cc---cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCH
Q 007444 162 ED---GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (603)
Q Consensus 162 ~~---~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~ 238 (603)
|. .|..... . ....|+.+..... .|.-++ +.+.+.. .+.+ ......|+||||++.|+.
T Consensus 75 Cg~C~sC~~i~~---g-------~~~dviEIdaas~----~gVd~I-ReL~e~l-~~~p---~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 75 CNECTSCLEITK---G-------ISSDVLEIDAASN----RGIENI-RELRDNV-KFAP---MGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred cCCCcHHHHHHc---c-------CCccceeechhhc----ccHHHH-HHHHHHH-Hhhh---hcCCCEEEEEechhhcCH
Confidence 33 3322110 0 1223444432110 111011 1111000 0001 112234999999999999
Q ss_pred HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 239 ~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+.++.||..|++. |.++++|.+|| +...+.+.+++|+... .+. +.+.+...+.+..
T Consensus 136 ~A~NALLKtLEEP-------------p~~viFILaTt-e~~kI~~TI~SRCq~~-~f~-~ls~~~i~~~L~~-------- 191 (484)
T PRK14956 136 QSFNALLKTLEEP-------------PAHIVFILATT-EFHKIPETILSRCQDF-IFK-KVPLSVLQDYSEK-------- 191 (484)
T ss_pred HHHHHHHHHhhcC-------------CCceEEEeecC-ChhhccHHHHhhhhee-eec-CCCHHHHHHHHHH--------
Confidence 9999999999863 23567777777 6778899999998654 554 3444433222221
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
+... ..+.++++++.+|+..+ +. +.|..+.++..+.+. .+ ..||.++|.+.
T Consensus 192 -----------------i~~~----Egi~~e~eAL~~Ia~~S---~G-d~RdAL~lLeq~i~~---~~-~~it~~~V~~~ 242 (484)
T PRK14956 192 -----------------LCKI----ENVQYDQEGLFWIAKKG---DG-SVRDMLSFMEQAIVF---TD-SKLTGVKIRKM 242 (484)
T ss_pred -----------------HHHH----cCCCCCHHHHHHHHHHc---CC-hHHHHHHHHHHHHHh---CC-CCcCHHHHHHH
Confidence 1111 24789999999887764 32 689999998654432 32 36999999877
Q ss_pred HHH
Q 007444 399 VEL 401 (603)
Q Consensus 399 ~~l 401 (603)
+.+
T Consensus 243 lg~ 245 (484)
T PRK14956 243 IGY 245 (484)
T ss_pred hCC
Confidence 643
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=1.6e-15 Score=165.31 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=139.4
Q ss_pred cccCCCCCCCCcccccHHHHHH---HHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTA---LLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~a---L~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
+..+.+|.+|+++|||++++.. |.-..-.....++||+||||||||++|+.++..+.
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-------------------- 61 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-------------------- 61 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--------------------
Confidence 3456789999999999998544 53333334456899999999999999999998752
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
.+|+.+..... |.-++...+..-.. ......+.|||||||+++....+
T Consensus 62 ----------------------~~~~~l~a~~~-----~~~~ir~ii~~~~~-----~~~~g~~~vL~IDEi~~l~~~~q 109 (413)
T PRK13342 62 ----------------------APFEALSAVTS-----GVKDLREVIEEARQ-----RRSAGRRTILFIDEIHRFNKAQQ 109 (413)
T ss_pred ----------------------CCEEEEecccc-----cHHHHHHHHHHHHH-----hhhcCCceEEEEechhhhCHHHH
Confidence 34444433211 11011111100000 00112467999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+.|+..++++. +++|++++... ..+.++|++|+.. +.+. |.+.++...++.....-
T Consensus 110 ~~LL~~le~~~---------------iilI~att~n~~~~l~~aL~SR~~~-~~~~-~ls~e~i~~lL~~~l~~------ 166 (413)
T PRK13342 110 DALLPHVEDGT---------------ITLIGATTENPSFEVNPALLSRAQV-FELK-PLSEEDIEQLLKRALED------ 166 (413)
T ss_pred HHHHHHhhcCc---------------EEEEEeCCCChhhhccHHHhcccee-eEeC-CCCHHHHHHHHHHHHHH------
Confidence 99999998764 45676655333 4678999999954 4666 55666555554432110
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~-v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
.. .. +.+++++++.|+.++ .+ ..|..++++..+... ...|+.+++.+++
T Consensus 167 -------------------~~--~~~i~i~~~al~~l~~~s-~G---d~R~aln~Le~~~~~-----~~~It~~~v~~~~ 216 (413)
T PRK13342 167 -------------------KE--RGLVELDDEALDALARLA-NG---DARRALNLLELAALG-----VDSITLELLEEAL 216 (413)
T ss_pred -------------------hh--cCCCCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHc-----cCCCCHHHHHHHH
Confidence 00 12 479999999998876 32 468888888765543 4579999999887
Q ss_pred HHH
Q 007444 400 ELV 402 (603)
Q Consensus 400 ~lv 402 (603)
...
T Consensus 217 ~~~ 219 (413)
T PRK13342 217 QKR 219 (413)
T ss_pred hhh
Confidence 653
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.65 E-value=1.4e-15 Score=157.63 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=108.9
Q ss_pred CcccccHHHHHHHH-H-hh--h---------c-c-CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 95 AAVVGQDAIKTALL-L-GA--I---------D-R-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 95 ~~IvGq~~~k~aL~-l-aa--v---------~-p-~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+++|++.+|+.+. + +. + . + ...+|||+||||||||++|++++..+.....+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~------------- 89 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI------------- 89 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC-------------
Confidence 47999999999772 1 10 1 1 1 13359999999999999999999876321111
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccC---
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL--- 236 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l--- 236 (603)
...+|+.+........++|.- .....+++.+|.+|||||||++.+
T Consensus 90 ----------------------~~~~~~~v~~~~l~~~~~g~~----------~~~~~~~l~~a~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 90 ----------------------KKGHLLTVTRDDLVGQYIGHT----------APKTKEVLKKAMGGVLFIDEAYYLYKP 137 (287)
T ss_pred ----------------------CCCceEEecHHHHHHHHhccc----------hHHHHHHHHHccCCEEEEEccchhccC
Confidence 134577666443333344421 111235777888999999999986
Q ss_pred ------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHH
Q 007444 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVA 306 (603)
Q Consensus 237 ------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~e 306 (603)
..++++.|+..|++.. .++++|++++++. ..+.|+|.+||+..|.++ |++.+++.+
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~-~~t~~el~~ 203 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP-DYTPEELLQ 203 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC-CcCHHHHHH
Confidence 5678999999998753 2467778876532 134699999999999998 778888888
Q ss_pred HHHH
Q 007444 307 AVGI 310 (603)
Q Consensus 307 I~~~ 310 (603)
|+..
T Consensus 204 I~~~ 207 (287)
T CHL00181 204 IAKI 207 (287)
T ss_pred HHHH
Confidence 8664
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.4e-15 Score=165.94 Aligned_cols=233 Identities=19% Similarity=0.181 Sum_probs=147.3
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc-
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE- 162 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~- 162 (603)
...|++|..|++||||+++++.|.-+.......| +||+||+|||||++|+.+++.+ ||........|
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-----------NCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCcccCC
Confidence 4557899999999999999999976665555566 6999999999999999999987 45433222334
Q ss_pred --ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 163 --DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 163 --~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
..|..-- .. ....++++.... -.|.-|+...+.. ..+.| ...+..|++|||++.|+.+.
T Consensus 75 ~C~~C~~i~---~g-------~~~d~~eidaas----~~~v~~iR~l~~~--~~~~p---~~~~~kV~iIDE~~~ls~~a 135 (509)
T PRK14958 75 DCENCREID---EG-------RFPDLFEVDAAS----RTKVEDTRELLDN--IPYAP---TKGRFKVYLIDEVHMLSGHS 135 (509)
T ss_pred CCHHHHHHh---cC-------CCceEEEEcccc----cCCHHHHHHHHHH--Hhhcc---ccCCcEEEEEEChHhcCHHH
Confidence 3343211 00 123355554321 1111111111100 00111 12344699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.||..|++. |.++.+|.+|| +...+.+.+++|+..+ .+. +.+.++..+.+..
T Consensus 136 ~naLLk~LEep-------------p~~~~fIlatt-d~~kl~~tI~SRc~~~-~f~-~l~~~~i~~~l~~---------- 189 (509)
T PRK14958 136 FNALLKTLEEP-------------PSHVKFILATT-DHHKLPVTVLSRCLQF-HLA-QLPPLQIAAHCQH---------- 189 (509)
T ss_pred HHHHHHHHhcc-------------CCCeEEEEEEC-ChHhchHHHHHHhhhh-hcC-CCCHHHHHHHHHH----------
Confidence 99999999974 23455666666 5667778899998544 665 4444432222221
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
+.. ...+.++++++.+|+..+ + .++|..++++..+.+ + |...||.+||.+.+.
T Consensus 190 ---------------il~----~egi~~~~~al~~ia~~s---~-GslR~al~lLdq~ia---~-~~~~It~~~V~~~lg 242 (509)
T PRK14958 190 ---------------LLK----EENVEFENAALDLLARAA---N-GSVRDALSLLDQSIA---Y-GNGKVLIADVKTMLG 242 (509)
T ss_pred ---------------HHH----HcCCCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHh---c-CCCCcCHHHHHHHHC
Confidence 111 125789999999887775 2 268988888854432 2 566799999987644
No 83
>PHA02244 ATPase-like protein
Probab=99.64 E-value=1.2e-14 Score=152.85 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=102.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
...+|||.||+|||||++|++|+..+ +.||+.++....
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l------------------------------------------g~pfv~In~l~d 155 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL------------------------------------------DLDFYFMNAIMD 155 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh------------------------------------------CCCEEEEecChH
Confidence 45789999999999999999999876 456777664333
Q ss_pred cccccccccchhccccCcccccccchhc--ccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEE
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~--A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIa 272 (603)
...++|.++ +...+.+|.|.+ +++|+||||||+.++++++..|+.+++++. ++..|..+..+.+|.+|+
T Consensus 156 ~~~L~G~i~-------~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~--l~l~g~~i~~h~~FRlIA 226 (383)
T PHA02244 156 EFELKGFID-------ANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKF--FDFADERVTAHEDFRVIS 226 (383)
T ss_pred HHhhccccc-------ccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCe--EEecCcEEecCCCEEEEE
Confidence 444555321 222455566644 488999999999999999999999999885 566677776667999999
Q ss_pred EeCCCC----------CCccHHHHhhhcccccccCCC
Q 007444 273 TYNPEE----------GVVREHLLDRIAINLSADLPM 299 (603)
Q Consensus 273 ttNp~e----------g~L~~~LldRf~l~v~v~~p~ 299 (603)
|+|+.. ..+.++++|||-. |++++|.
T Consensus 227 TsN~~~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~ 262 (383)
T PHA02244 227 AGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDYDE 262 (383)
T ss_pred eeCCCccCcccccCCCcccCHHHHhhcEE-eeCCCCc
Confidence 999832 3689999999964 5888764
No 84
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.64 E-value=5.5e-15 Score=156.86 Aligned_cols=264 Identities=19% Similarity=0.157 Sum_probs=189.0
Q ss_pred CcccccHHHHHHHHHhhhc------c------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 95 AAVVGQDAIKTALLLGAID------R------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~------p------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
..|.|.+++|+|+.+.+.. | +.-+|||.|.|||+||.|.+.+-...| +.+
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP-IaV----------------- 392 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP-IAV----------------- 392 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc-eEE-----------------
Confidence 3589999999999654441 1 223499999999999999999877664 222
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
++-..+.+...|..++ -+...+-...++-|.+..|+|||++|||++.+.++---
T Consensus 393 ------------------------YTSGKGSSAAGLTASV--~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRV 446 (729)
T KOG0481|consen 393 ------------------------YTSGKGSSAAGLTASV--IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRV 446 (729)
T ss_pred ------------------------EecCCCcccccceeeE--EecCCcceEEEecceEEEecCCEEEeehhhccCchhhh
Confidence 1112223333333332 11111122334557888999999999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
++..+|+...+.+...|++..+..+..|+|+.||--| +|-+-+|.||++++.|....+.++-..|.+.
T Consensus 447 AIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkH 526 (729)
T KOG0481|consen 447 AIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKH 526 (729)
T ss_pred HHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHH
Confidence 9999999999999999999999999999999998322 3568899999999888866666555555555
Q ss_pred HHHHHhh-hHHHhhh-----hhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcC----------------CCCch
Q 007444 311 ATQFQER-SNEVFKM-----VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----------------GCQGH 368 (603)
Q Consensus 311 ~~~f~~~-~~~~~~~-----~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~----------------~v~s~ 368 (603)
+...-.. .+.+... -.-..+.++..|..+|.... ..+++++-+.|....... -..+.
T Consensus 527 VI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~-PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITV 605 (729)
T KOG0481|consen 527 VINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCG-PRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITV 605 (729)
T ss_pred hhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeH
Confidence 4433221 1111111 11223568888888887664 478888888877643210 02367
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHc
Q 007444 369 RAELYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (603)
Q Consensus 369 Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (603)
|.+..++|.+..+|.++-...+|++||++|++|-.
T Consensus 606 RQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~ 640 (729)
T KOG0481|consen 606 RQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQ 640 (729)
T ss_pred HHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999998853
No 85
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.2e-14 Score=162.23 Aligned_cols=231 Identities=20% Similarity=0.223 Sum_probs=145.0
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCC-cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC---CCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~---~~~ 160 (603)
...++||..|++||||+.+++.|.-+..+.... .+||+||+|||||++|+++++.+ ||.... +..
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-----------nC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-----------NCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCCc
Confidence 445789999999999999999996655443333 46999999999999999999986 453322 223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.|..|..... + ....++.+..... .|.-++...+... .+.| ......|+||||+++|+...
T Consensus 74 ~C~sC~~I~~----g------~hpDviEIDAAs~----~~VddIReli~~~--~y~P---~~gk~KV~IIDEVh~LS~~A 134 (702)
T PRK14960 74 VCATCKAVNE----G------RFIDLIEIDAASR----TKVEDTRELLDNV--PYAP---TQGRFKVYLIDEVHMLSTHS 134 (702)
T ss_pred cCHHHHHHhc----C------CCCceEEeccccc----CCHHHHHHHHHHH--hhhh---hcCCcEEEEEechHhcCHHH
Confidence 3444443210 0 1234555543211 1111111111100 1111 11234599999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.|+..|++.. ..+.+|.++| +...+...+++|+..+ .+. +.+.++..+.+...
T Consensus 135 ~NALLKtLEEPP-------------~~v~FILaTt-d~~kIp~TIlSRCq~f-eFk-pLs~eEI~k~L~~I--------- 189 (702)
T PRK14960 135 FNALLKTLEEPP-------------EHVKFLFATT-DPQKLPITVISRCLQF-TLR-PLAVDEITKHLGAI--------- 189 (702)
T ss_pred HHHHHHHHhcCC-------------CCcEEEEEEC-ChHhhhHHHHHhhhee-ecc-CCCHHHHHHHHHHH---------
Confidence 999999999742 2445666666 6667778899998554 776 55555444333321
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
.. ...+.++++++.+|+..+ +. ++|..++++..+- + + |...|+.++|...
T Consensus 190 ----------------l~----kEgI~id~eAL~~IA~~S---~G-dLRdALnLLDQaI--a-y-g~g~IT~edV~~l 239 (702)
T PRK14960 190 ----------------LE----KEQIAADQDAIWQIAESA---QG-SLRDALSLTDQAI--A-Y-GQGAVHHQDVKEM 239 (702)
T ss_pred ----------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--H-h-cCCCcCHHHHHHH
Confidence 11 125789999998887764 33 6898888875333 2 2 5567888887553
No 86
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.62 E-value=1.6e-14 Score=148.22 Aligned_cols=132 Identities=27% Similarity=0.388 Sum_probs=109.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-----------CCCccHHHHhhhcccc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-----------eg~L~~~LldRf~l~v 293 (603)
.|||||||+|.|+-+....|..+|++.. -.++|.+||.- +.-++.+||||+-++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII- 356 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLII- 356 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEE-
Confidence 6899999999999999999999999765 24678888862 234788999998665
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
... |++.++..+|++.+. .-..+.++++++++|+.+... .|+|..++
T Consensus 357 ~t~-py~~~EireIi~iRa-----------------------------~ee~i~l~~~Ale~L~~ig~e---tSLRYa~q 403 (450)
T COG1224 357 STR-PYSREEIREIIRIRA-----------------------------KEEDIELSDDALEYLTDIGEE---TSLRYAVQ 403 (450)
T ss_pred ecC-CCCHHHHHHHHHHhh-----------------------------hhhccccCHHHHHHHHhhchh---hhHHHHHH
Confidence 554 889998888877542 223688999999999888544 47899999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
++.-|..+|...|+..|..+||++|.++-+-
T Consensus 404 LL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred hccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 9999999999999999999999999887543
No 87
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=2.7e-15 Score=153.92 Aligned_cols=232 Identities=20% Similarity=0.242 Sum_probs=153.9
Q ss_pred cccccCCCCCCCCcccccHHHHH--HHHHhhhcc-CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKT--ALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~--aL~laav~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+...+.+|.++++.|||+++.- .++..++.. .+..++|+||||||||+|||.|+.-...
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~----------------- 188 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK----------------- 188 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-----------------
Confidence 36666678999999999998654 344444432 4567999999999999999999976531
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
....||+++...+. .-|+...+. .. +.-......+.|||||||++++..
T Consensus 189 ----------------------~SyrfvelSAt~a~-----t~dvR~ife-~a---q~~~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028|consen 189 ----------------------HSYRFVELSATNAK-----TNDVRDIFE-QA---QNEKSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred ----------------------CceEEEEEeccccc-----hHHHHHHHH-HH---HHHHhhhcceeEEEeHHhhhhhhh
Confidence 12346665433211 111111110 00 001111224579999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
.|+.+|-..+.|. +++||+|.-.+ -.|..+|+.|+-+.| +. +...+....|+.+......+.
T Consensus 238 QQD~fLP~VE~G~---------------I~lIGATTENPSFqln~aLlSRC~Vfv-Le-kL~~n~v~~iL~raia~l~ds 300 (554)
T KOG2028|consen 238 QQDTFLPHVENGD---------------ITLIGATTENPSFQLNAALLSRCRVFV-LE-KLPVNAVVTILMRAIASLGDS 300 (554)
T ss_pred hhhcccceeccCc---------------eEEEecccCCCccchhHHHHhccceeE-ec-cCCHHHHHHHHHHHHHhhccc
Confidence 9999999999886 46888887444 468899999998773 44 567788888877655433221
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHc-C---CCCCcH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE-G---REKVNV 392 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l~~--v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~-g---r~~Vt~ 392 (603)
+.. -..+++ +.+++.++++|+.++. ...|..+++++.+..++-.. | +..++.
T Consensus 301 er~------------------~~~l~n~s~~ve~siidyla~lsd----GDaR~aLN~Lems~~m~~tr~g~~~~~~lSi 358 (554)
T KOG2028|consen 301 ERP------------------TDPLPNSSMFVEDSIIDYLAYLSD----GDARAALNALEMSLSMFCTRSGQSSRVLLSI 358 (554)
T ss_pred ccc------------------CCCCCCcchhhhHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHhhcCCcccceecH
Confidence 100 001222 4688999999988763 24699999998886655444 2 346899
Q ss_pred HHHHHHHHH
Q 007444 393 DDLKKAVEL 401 (603)
Q Consensus 393 eDv~~A~~l 401 (603)
+|+++++..
T Consensus 359 dDvke~lq~ 367 (554)
T KOG2028|consen 359 DDVKEGLQR 367 (554)
T ss_pred HHHHHHHhh
Confidence 999998764
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.1e-15 Score=163.65 Aligned_cols=213 Identities=19% Similarity=0.206 Sum_probs=131.7
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC-------
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT------- 156 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~------- 156 (603)
+..|+++..|++||||+++++.|.-+..+....| +||+|++|||||++|+.|++.+ ||...
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL-----------nC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL-----------NCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-----------cCCCccccccCC
Confidence 4457899999999999999999876555445555 6999999999999999999987 45311
Q ss_pred -CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEeccccc
Q 007444 157 -CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (603)
Q Consensus 157 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~ 235 (603)
.+...|..|..... + ....|+++.... -.|.-++..-+ + ...+.+ ...+..|+||||++.
T Consensus 75 ~~PCG~C~sC~~I~a----G------~hpDviEIdAas----~~gVDdIReLi-e-~~~~~P---~~gr~KViIIDEah~ 135 (700)
T PRK12323 75 AQPCGQCRACTEIDA----G------RFVDYIEMDAAS----NRGVDEMAQLL-D-KAVYAP---TAGRFKVYMIDEVHM 135 (700)
T ss_pred CCCCcccHHHHHHHc----C------CCCcceEecccc----cCCHHHHHHHH-H-HHHhch---hcCCceEEEEEChHh
Confidence 12233444443110 0 123355544321 01211111111 0 000111 122345999999999
Q ss_pred CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 236 l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
|+...+|.||..|++- |.+++||.+|| +...|.+.+++|+..+ .+. +.+.++..+.+.....
T Consensus 136 Ls~~AaNALLKTLEEP-------------P~~v~FILaTt-ep~kLlpTIrSRCq~f-~f~-~ls~eei~~~L~~Il~-- 197 (700)
T PRK12323 136 LTNHAFNAMLKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPGHIVSHLDAILG-- 197 (700)
T ss_pred cCHHHHHHHHHhhccC-------------CCCceEEEEeC-ChHhhhhHHHHHHHhc-ccC-CCChHHHHHHHHHHHH--
Confidence 9999999999999873 23567777777 7778889999998554 666 3454543333322111
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr 376 (603)
...+.++++++..|+..+ +. +.|..+.++.
T Consensus 198 ---------------------------~Egi~~d~eAL~~IA~~A---~G-s~RdALsLLd 227 (700)
T PRK12323 198 ---------------------------EEGIAHEVNALRLLAQAA---QG-SMRDALSLTD 227 (700)
T ss_pred ---------------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHH
Confidence 014667777777776553 22 5677777664
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.4e-15 Score=160.86 Aligned_cols=233 Identities=20% Similarity=0.262 Sum_probs=146.0
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCcc
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEW 161 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~~ 161 (603)
..+.+|..|++|+||++++..|..+..+....+ +||+|||||||||+|+++++.+. |... .|...
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-----------~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-----------CENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------cccCCCCCCCcc
Confidence 346789999999999999998876665555544 89999999999999999999873 3221 12223
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
|..|..... + ....++.+..... .|.-++. .+.+ .....| ..++..||||||++.|....+
T Consensus 74 c~~c~~i~~----g------~~~dv~el~aa~~----~gid~iR-~i~~-~~~~~p---~~~~~kVvIIDE~h~Lt~~a~ 134 (472)
T PRK14962 74 CRACRSIDE----G------TFMDVIELDAASN----RGIDEIR-KIRD-AVGYRP---MEGKYKVYIIDEVHMLTKEAF 134 (472)
T ss_pred cHHHHHHhc----C------CCCccEEEeCccc----CCHHHHH-HHHH-HHhhCh---hcCCeEEEEEEChHHhHHHHH
Confidence 333332110 0 1223444432211 1110111 1110 001112 123557999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
+.|+..+++.. ..+++|+++| ....+.++|.+|+.. +.+. |.+.++...++....
T Consensus 135 ~~LLk~LE~p~-------------~~vv~Ilatt-n~~kl~~~L~SR~~v-v~f~-~l~~~el~~~L~~i~--------- 189 (472)
T PRK14962 135 NALLKTLEEPP-------------SHVVFVLATT-NLEKVPPTIISRCQV-IEFR-NISDELIIKRLQEVA--------- 189 (472)
T ss_pred HHHHHHHHhCC-------------CcEEEEEEeC-ChHhhhHHHhcCcEE-EEEC-CccHHHHHHHHHHHH---------
Confidence 99999998632 2345665555 344788999999974 4776 556665444433211
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
....+.++++++.+|+..+ +. +.|..++.+..+.. ..+. .||.+||.+++..
T Consensus 190 --------------------~~egi~i~~eal~~Ia~~s---~G-dlR~aln~Le~l~~---~~~~-~It~e~V~~~l~~ 241 (472)
T PRK14962 190 --------------------EAEGIEIDREALSFIAKRA---SG-GLRDALTMLEQVWK---FSEG-KITLETVHEALGL 241 (472)
T ss_pred --------------------HHcCCCCCHHHHHHHHHHh---CC-CHHHHHHHHHHHHH---hcCC-CCCHHHHHHHHcC
Confidence 0125789999999998864 22 57888888865433 3333 4999999988754
No 90
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.2e-16 Score=154.99 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=122.6
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhccC------------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccc
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGS 149 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~------------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~ 149 (603)
+..+....+.+.|++|.|.+.+|.||.-+.+-|- -.|||||||||||||.||++++.+.
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--------- 190 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--------- 190 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---------
Confidence 3445556788999999999999999987777551 2469999999999999999999874
Q ss_pred cccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCc
Q 007444 150 IANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRG 226 (603)
Q Consensus 150 ~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~g 226 (603)
+..|+.++.+-..+.|+|.. ..+...|+..| ...
T Consensus 191 ---------------------------------nSTFFSvSSSDLvSKWmGES----------EkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 191 ---------------------------------NSTFFSVSSSDLVSKWMGES----------EKLVKNLFEMARENKPS 227 (439)
T ss_pred ---------------------------------CCceEEeehHHHHHHHhccH----------HHHHHHHHHHHHhcCCc
Confidence 67899999998999999952 22333466555 467
Q ss_pred eEEecccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccc
Q 007444 227 VLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSA 295 (603)
Q Consensus 227 IL~IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v 295 (603)
|||||||+.| ...+-..||--|+ |+ |.. ...++|+|+|| -++.|+.++.+||..+|+|
T Consensus 228 IIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GV------G~d---~~gvLVLgATN-iPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 228 IIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GV------GND---NDGVLVLGATN-IPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred EEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-cc------ccC---CCceEEEecCC-CchhHHHHHHHHhhcceec
Confidence 9999999987 1233344444443 32 110 12478999999 8999999999999999999
Q ss_pred cCCCCHHHHHHHHH
Q 007444 296 DLPMTFEDRVAAVG 309 (603)
Q Consensus 296 ~~p~~~e~r~eI~~ 309 (603)
++| +...|...++
T Consensus 297 PLP-e~~AR~~MF~ 309 (439)
T KOG0739|consen 297 PLP-EAHARARMFK 309 (439)
T ss_pred cCC-cHHHhhhhhe
Confidence 876 5555554433
No 91
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=4.4e-15 Score=172.86 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=115.2
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhc-------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+...|++|.|++.+|..|.-.... ....||||+||||||||++|++++..+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--------------- 511 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--------------- 511 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---------------
Confidence 3567899999999999988432221 124679999999999999999999986
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+.+|+.+......+.++|.- ++.+ .-++..| ..+||||||
T Consensus 512 ---------------------------~~~fi~v~~~~l~~~~vGes--e~~i--------~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 512 ---------------------------GANFIAVRGPEILSKWVGES--EKAI--------REIFRKARQAAPAIIFFDE 554 (733)
T ss_pred ---------------------------CCCEEEEehHHHhhcccCcH--HHHH--------HHHHHHHHhcCCEEEEEEC
Confidence 45777776666666777742 1111 1133332 457999999
Q ss_pred cccCC------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 233 INLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 233 i~~l~------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
|+.+. ..+++.||..|+.-. ...+++||+||| ....+++++++ ||+..|.++.
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~v~vI~aTn-~~~~ld~allRpgRfd~~i~v~~- 621 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----------ELSNVVVIAATN-RPDILDPALLRPGRFDRLILVPP- 621 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----------CCCCEEEEEeCC-ChhhCCHhhcCCCccceEEEeCC-
Confidence 98762 346777888877321 123689999999 77889999997 9999999985
Q ss_pred CCHHHHHHHHHH
Q 007444 299 MTFEDRVAAVGI 310 (603)
Q Consensus 299 ~~~e~r~eI~~~ 310 (603)
++.+.|.+|++.
T Consensus 622 Pd~~~R~~i~~~ 633 (733)
T TIGR01243 622 PDEEARKEIFKI 633 (733)
T ss_pred cCHHHHHHHHHH
Confidence 589999999764
No 92
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.7e-15 Score=145.65 Aligned_cols=221 Identities=20% Similarity=0.254 Sum_probs=152.4
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
++.-.+++|-|.+.-+..|.-+.+-| ...|||+|||||||||++||+.+...
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT--------------- 229 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT--------------- 229 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---------------
Confidence 45567889999998888776655544 24679999999999999999998754
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+..|..+........++|. |..-. ...|+.| ...|+||||
T Consensus 230 ---------------------------~aTFLKLAgPQLVQMfIGd---------GAkLV-RDAFaLAKEkaP~IIFIDE 272 (424)
T KOG0652|consen 230 ---------------------------NATFLKLAGPQLVQMFIGD---------GAKLV-RDAFALAKEKAPTIIFIDE 272 (424)
T ss_pred ---------------------------cchHHHhcchHHHhhhhcc---------hHHHH-HHHHHHhhccCCeEEEEec
Confidence 4556556555666777884 44322 2334444 467999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
++.+ +.++|..+|.++..-. |.+. ..++-+|++|| .-..|+|+|++ |++..|+++.|
T Consensus 273 lDAIGtKRfDSek~GDREVQRTMLELLNQLD------GFss--~~~vKviAATN-RvDiLDPALlRSGRLDRKIEfP~P- 342 (424)
T KOG0652|consen 273 LDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GFSS--DDRVKVIAATN-RVDILDPALLRSGRLDRKIEFPHP- 342 (424)
T ss_pred hhhhccccccccccccHHHHHHHHHHHHhhc------CCCC--ccceEEEeecc-cccccCHHHhhcccccccccCCCC-
Confidence 9876 4678999998887532 4332 23688999999 66778999997 99999999865
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 300 ~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
+.+.|..|++... | ...+++++ .+.|+.....+|..... .+.--|
T Consensus 343 ne~aRarIlQIHs---------------------------R----KMnv~~DvNfeELaRsTddFNGAQcK---AVcVEA 388 (424)
T KOG0652|consen 343 NEEARARILQIHS---------------------------R----KMNVSDDVNFEELARSTDDFNGAQCK---AVCVEA 388 (424)
T ss_pred ChHHHHHHHHHhh---------------------------h----hcCCCCCCCHHHHhhcccccCchhhe---eeehhh
Confidence 7787887876421 1 12223222 34455545555543222 223346
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 379 KCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
.-+|...|...|+.+|+.+++..|...
T Consensus 389 GMiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 389 GMIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred hHHHHhcccccccHHHHHHHHHHHHHh
Confidence 667778899999999999998877654
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.60 E-value=1.9e-14 Score=145.51 Aligned_cols=208 Identities=16% Similarity=0.106 Sum_probs=130.6
Q ss_pred CccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
....+..+++|..|++++||+.++.+|.-+......-++|||||||||||+.|++++..+. |.--.|..
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-----------~~~~~~~r 90 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-----------CEQLFPCR 90 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-----------Cccccccc
Confidence 3455777899999999999999999997666544456799999999999999999999873 31112223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccc-----cchhccccCc-ccccccchhcccCceEEecccc
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-----DVEESVKTGT-TVFQPGLLAEAHRGVLYIDEIN 234 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~l-----dl~~~l~~g~-~~~~~Gll~~A~~gIL~IDEi~ 234 (603)
.|+.| ++.++-++.+ ++++...... ....|-. ---|++|||.+
T Consensus 91 vl~ln---------------------------aSderGisvvr~Kik~fakl~~~~~~~~~~~~~----~fKiiIlDEcd 139 (346)
T KOG0989|consen 91 VLELN---------------------------ASDERGISVVREKIKNFAKLTVLLKRSDGYPCP----PFKIIILDECD 139 (346)
T ss_pred hhhhc---------------------------ccccccccchhhhhcCHHHHhhccccccCCCCC----cceEEEEechh
Confidence 33332 2222222210 0000000000 0000000 11499999999
Q ss_pred cCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 235 LLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 235 ~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.|..+.|++|...|+.-.- ..+|++|. | .-..+...+..|.... .+. +...+...+.++ +
T Consensus 140 smtsdaq~aLrr~mE~~s~-----------~trFiLIc--n-ylsrii~pi~SRC~Kf-rFk-~L~d~~iv~rL~----~ 199 (346)
T KOG0989|consen 140 SMTSDAQAALRRTMEDFSR-----------TTRFILIC--N-YLSRIIRPLVSRCQKF-RFK-KLKDEDIVDRLE----K 199 (346)
T ss_pred hhhHHHHHHHHHHHhcccc-----------ceEEEEEc--C-ChhhCChHHHhhHHHh-cCC-CcchHHHHHHHH----H
Confidence 9999999999999997321 11466665 4 6667888999998776 444 333332222222 1
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
|.. ...+.++++++++|+.++ +. ++|.++.+++-+.
T Consensus 200 ---------------------Ia~----~E~v~~d~~al~~I~~~S---~G-dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 200 ---------------------IAS----KEGVDIDDDALKLIAKIS---DG-DLRRAITTLQSLS 235 (346)
T ss_pred ---------------------HHH----HhCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHhh
Confidence 111 125889999999998875 22 6888888875443
No 94
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.8e-16 Score=158.73 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=122.8
Q ss_pred CCCCCcccccHHHHHHHHHhhhcc--------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDR--------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p--------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
.+.|.+|-|.+.++.+|.-..+-| ...||||+||||||||++|++++...
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---------------- 151 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---------------- 151 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------------
Confidence 477999999999999995544433 23569999999999999999999985
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccc-cchhccccCcccccccchhcccCceEEeccccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~l-dl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~ 235 (603)
..+|+.+..+...++|||.- -+-+++++=.. +-.+.|+|||||+.
T Consensus 152 --------------------------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAs--------Kl~P~iIFIDEvds 197 (386)
T KOG0737|consen 152 --------------------------GANFINVSVSNLTSKWFGEAQKLVKAVFSLAS--------KLQPSIIFIDEVDS 197 (386)
T ss_pred --------------------------CCCcceeeccccchhhHHHHHHHHHHHHhhhh--------hcCcceeehhhHHH
Confidence 67899999998899999951 11112221111 22468999999986
Q ss_pred CCHHHHHHHHHHHH--cCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 236 LDEGISNLLLNVLT--EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 236 l~~~~~~~LL~~l~--~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
+-..-+..=..++. ........+|......++++|+|+|| -+..|+.++++||.-++.|+.| +.++|.+|+...+.
T Consensus 198 ~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN-RP~DlDeAiiRR~p~rf~V~lP-~~~qR~kILkviLk 275 (386)
T KOG0737|consen 198 FLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN-RPFDLDEAIIRRLPRRFHVGLP-DAEQRRKILKVILK 275 (386)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC-CCccHHHHHHHhCcceeeeCCC-chhhHHHHHHHHhc
Confidence 52110110111111 11111245677777777899999999 8899999999999999999976 78999999886543
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.9e-14 Score=158.18 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=150.5
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~ 159 (603)
....+++|..|++||||+.+++.|.-+...... +++||+||+||||||+|+.++..+ ||... .|.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-----------nC~~~~~~~pC 70 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-----------NCSNGPTSDPC 70 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-----------cCcCCCCCCCc
Confidence 455678999999999999999988654433233 469999999999999999999876 45322 233
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
..|..|..-... ....++++.... -.|.-|+...+ +.. ...| ..+...|++|||++.|+.+
T Consensus 71 g~C~~C~~i~~~----------~~~Dv~eidaas----~~~vddIR~Ii-e~~-~~~P---~~~~~KVvIIDEah~Ls~~ 131 (491)
T PRK14964 71 GTCHNCISIKNS----------NHPDVIEIDAAS----NTSVDDIKVIL-ENS-CYLP---ISSKFKVYIIDEVHMLSNS 131 (491)
T ss_pred cccHHHHHHhcc----------CCCCEEEEeccc----CCCHHHHHHHH-HHH-Hhcc---ccCCceEEEEeChHhCCHH
Confidence 344444432110 244566654431 11222222111 110 1112 1245679999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.||..|++-. ..+.+|.+++ +...+...+.+|+... .+. +.+.++..+.+...
T Consensus 132 A~NaLLK~LEePp-------------~~v~fIlatt-e~~Kl~~tI~SRc~~~-~f~-~l~~~el~~~L~~i-------- 187 (491)
T PRK14964 132 AFNALLKTLEEPA-------------PHVKFILATT-EVKKIPVTIISRCQRF-DLQ-KIPTDKLVEHLVDI-------- 187 (491)
T ss_pred HHHHHHHHHhCCC-------------CCeEEEEEeC-ChHHHHHHHHHhheee-ecc-cccHHHHHHHHHHH--------
Confidence 9999999999742 2455666665 5556888899998654 666 44444433333211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
.. ..++.++++++++|++.+ +. +.|..+.++..+.. +.+ ..||.++|.+.+
T Consensus 188 -----------------a~----~Egi~i~~eAL~lIa~~s---~G-slR~alslLdqli~---y~~-~~It~e~V~~ll 238 (491)
T PRK14964 188 -----------------AK----KENIEHDEESLKLIAENS---SG-SMRNALFLLEQAAI---YSN-NKISEKSVRDLL 238 (491)
T ss_pred -----------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcC-CCCCHHHHHHHH
Confidence 11 125789999999887775 22 67988888755443 334 479999998865
Q ss_pred HHH
Q 007444 400 ELV 402 (603)
Q Consensus 400 ~lv 402 (603)
.++
T Consensus 239 g~~ 241 (491)
T PRK14964 239 GCV 241 (491)
T ss_pred ccC
Confidence 433
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=1e-14 Score=167.40 Aligned_cols=224 Identities=22% Similarity=0.232 Sum_probs=143.1
Q ss_pred cccccCCCCCCCCcccccHHHHH---HHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~---aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+...+.+|.+|++|+||++++. .|.-..-.....++||+||||||||++|+++++.+.
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~------------------ 77 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR------------------ 77 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc------------------
Confidence 46677788999999999999874 343222233457899999999999999999998752
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
.+|+.+.... .|.-++...+..... .+-...++++||||||+.++..
T Consensus 78 ------------------------~~f~~lna~~-----~~i~dir~~i~~a~~----~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 78 ------------------------AHFSSLNAVL-----AGVKDLRAEVDRAKE----RLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred ------------------------Ccceeehhhh-----hhhHHHHHHHHHHHH----HhhhcCCceEEEEeChhhCCHH
Confidence 2333332211 010011111100000 0000123569999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
.++.|+..++.+. +++|++++... ..+.++|++|+.+ +.+. |.+.+++..++.....-
T Consensus 125 qQdaLL~~lE~g~---------------IiLI~aTTenp~~~l~~aL~SR~~v-~~l~-pLs~edi~~IL~~~l~~---- 183 (725)
T PRK13341 125 QQDALLPWVENGT---------------ITLIGATTENPYFEVNKALVSRSRL-FRLK-SLSDEDLHQLLKRALQD---- 183 (725)
T ss_pred HHHHHHHHhcCce---------------EEEEEecCCChHhhhhhHhhccccc-eecC-CCCHHHHHHHHHHHHHH----
Confidence 9999999888764 46777665433 4578899999654 4676 66777776666543210
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCC--CCCcHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGR--EKVNVDDL 395 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr--~~Vt~eDv 395 (603)
. .+.. ...+.++++++++|++++ .+ ..|..+++++.+...+...+. ..|+.+++
T Consensus 184 -----------------~--~~~~g~~~v~I~deaL~~La~~s-~G---D~R~lln~Le~a~~~~~~~~~~~i~It~~~~ 240 (725)
T PRK13341 184 -----------------K--ERGYGDRKVDLEPEAEKHLVDVA-NG---DARSLLNALELAVESTPPDEDGLIDITLAIA 240 (725)
T ss_pred -----------------H--HhhcCCcccCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccCCCCceeccHHHH
Confidence 0 0111 235789999999999886 43 469999999876543322222 23788888
Q ss_pred HHHHHH
Q 007444 396 KKAVEL 401 (603)
Q Consensus 396 ~~A~~l 401 (603)
++++.-
T Consensus 241 ~e~l~~ 246 (725)
T PRK13341 241 EESIQQ 246 (725)
T ss_pred HHHHHH
Confidence 887654
No 97
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=1.4e-14 Score=167.06 Aligned_cols=208 Identities=23% Similarity=0.260 Sum_probs=136.5
Q ss_pred cccccHHHHHHHHHhhh-------cc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 96 AVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
.|+||++++..|..+.. ++ ..+.+||.||+|||||.+|+.|+..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------------------------- 513 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------------------------- 513 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-------------------------
Confidence 48999999998843221 12 245799999999999999999999873
Q ss_pred ccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccccccchhcc----cCceEEecccccCC
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD 237 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l~ 237 (603)
.+|+.++.+ .+..+|+|.-. + +.|. ...|.|..+ ..+|||||||++++
T Consensus 514 -----------------~~~i~id~se~~~~~~~~~LiG~~~---g-yvg~--~~~g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 514 -----------------IELLRFDMSEYMERHTVSRLIGAPP---G-YVGF--DQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred -----------------CCcEEeechhhcccccHHHHcCCCC---C-cccc--cccchHHHHHHhCCCcEEEeccHhhhh
Confidence 223322221 12345665310 0 0010 122344333 45899999999999
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC------------------------CCccHHHHhhhcccc
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINL 293 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~L~~~LldRf~l~v 293 (603)
+++++.|+++|++|.++- ..|..+.+ .++++|+|+|... ..|+|+|+.||+.+|
T Consensus 571 ~~v~~~LLq~ld~G~ltd-~~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred HHHHHHHHHHHhcCeeec-CCCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 999999999999998642 23433322 3678999999420 137899999999887
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
.+. |.+.+...+|+...+. .+..++ +...-.+.++++++++|++.+..... |.|....
T Consensus 649 ~f~-~L~~~~l~~I~~~~l~-----------------~~~~~l---~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r 706 (758)
T PRK11034 649 WFD-HLSTDVIHQVVDKFIV-----------------ELQAQL---DQKGVSLEVSQEARDWLAEKGYDRAM-GARPMAR 706 (758)
T ss_pred EcC-CCCHHHHHHHHHHHHH-----------------HHHHHH---HHCCCCceECHHHHHHHHHhCCCCCC-CCchHHH
Confidence 776 7788888888764321 112222 22233578999999999987765433 5665555
Q ss_pred HH
Q 007444 374 AA 375 (603)
Q Consensus 374 ll 375 (603)
++
T Consensus 707 ~i 708 (758)
T PRK11034 707 VI 708 (758)
T ss_pred HH
Confidence 44
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.1e-14 Score=152.65 Aligned_cols=234 Identities=19% Similarity=0.184 Sum_probs=144.6
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC---CC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~---~~ 159 (603)
+...+++|..|++|+||+++++.|.-+.......| +||+||+|||||++|+++++.+. |.... |.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-----------c~~~~~~~pc 73 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-----------CQNGITSNPC 73 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCC
Confidence 34567899999999999999999866554434445 69999999999999999999873 32211 21
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
.-|..|.+... . ....++.+.... . .+.-++.. +.+.. ...| ...+..|++|||++.++..
T Consensus 74 ~~c~~c~~~~~---~-------~~~d~~~~~~~~-~---~~v~~ir~-i~~~~-~~~p---~~~~~kviIIDEa~~l~~~ 134 (363)
T PRK14961 74 RKCIICKEIEK---G-------LCLDLIEIDAAS-R---TKVEEMRE-ILDNI-YYSP---SKSRFKVYLIDEVHMLSRH 134 (363)
T ss_pred CCCHHHHHHhc---C-------CCCceEEecccc-c---CCHHHHHH-HHHHH-hcCc---ccCCceEEEEEChhhcCHH
Confidence 22333332110 0 012333332210 0 01111111 10000 0011 1223469999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.||..+++.. ..+.+|.+++ +...+.+.+..|+-. +.+. |++.++..+++.....
T Consensus 135 a~naLLk~lEe~~-------------~~~~fIl~t~-~~~~l~~tI~SRc~~-~~~~-~l~~~el~~~L~~~~~------ 192 (363)
T PRK14961 135 SFNALLKTLEEPP-------------QHIKFILATT-DVEKIPKTILSRCLQ-FKLK-IISEEKIFNFLKYILI------ 192 (363)
T ss_pred HHHHHHHHHhcCC-------------CCeEEEEEcC-ChHhhhHHHHhhceE-EeCC-CCCHHHHHHHHHHHHH------
Confidence 9999999998742 2344555555 445688899999854 4776 6667765555442211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
. ..+.++++++.+|+..+ +. +.|..++++..+.. + |...|+.++|.+++
T Consensus 193 ---------------------~--~g~~i~~~al~~ia~~s---~G-~~R~al~~l~~~~~---~-~~~~It~~~v~~~l 241 (363)
T PRK14961 193 ---------------------K--ESIDTDEYALKLIAYHA---HG-SMRDALNLLEHAIN---L-GKGNINIKNVTDML 241 (363)
T ss_pred ---------------------H--cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---h-cCCCCCHHHHHHHH
Confidence 0 14679999999887765 22 57888888765443 3 56789999998876
Q ss_pred H
Q 007444 400 E 400 (603)
Q Consensus 400 ~ 400 (603)
.
T Consensus 242 ~ 242 (363)
T PRK14961 242 G 242 (363)
T ss_pred C
Confidence 4
No 99
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.1e-14 Score=141.13 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=142.1
Q ss_pred CCCCCCCcccccHHHHHHHHHh--------------hhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG--------------AIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la--------------av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
++.++..+|-|.+--|..+.-+ -++| ..|||+|||||||||+|++++++..
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidp-prgvllygppg~gktml~kava~~t-------------- 213 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP-PRGVLLYGPPGTGKTMLAKAVANHT-------------- 213 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC-CcceEEeCCCCCcHHHHHHHHhhcc--------------
Confidence 4567888998877544444211 1233 4789999999999999999999753
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
...|+.+..+.....++|. |-+ .....+..| ...|+|||
T Consensus 214 ----------------------------~a~firvvgsefvqkylge---------gpr-mvrdvfrlakenapsiifid 255 (408)
T KOG0727|consen 214 ----------------------------TAAFIRVVGSEFVQKYLGE---------GPR-MVRDVFRLAKENAPSIIFID 255 (408)
T ss_pred ----------------------------chheeeeccHHHHHHHhcc---------CcH-HHHHHHHHHhccCCcEEEee
Confidence 4678887777777777774 432 222334333 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+ +.++|..|+.++.... |.. ...++-+|.+|| ....|+|+|++ |++..|++++|
T Consensus 256 eidaiatkrfdaqtgadrevqril~ellnqmd------gfd--q~~nvkvimatn-radtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 256 EIDAIATKRFDAQTGADREVQRILIELLNQMD------GFD--QTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred hhhhHhhhhccccccccHHHHHHHHHHHHhcc------CcC--cccceEEEEecC-cccccCHhhcCCccccccccCCCC
Confidence 99875 5688999988887543 332 224788999999 66778999997 99999998865
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHH-HHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME-ALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~-a~~~~v~s~Ra~i~llr~ 377 (603)
++.++.-++.-. .....+++++ .|-.+ +.+..+ |.-..-.+.+-
T Consensus 327 -drrqkrlvf~ti-------------------------------tskm~ls~~v--dle~~v~rpdki-s~adi~aicqe 371 (408)
T KOG0727|consen 327 -DRRQKRLVFSTI-------------------------------TSKMNLSDEV--DLEDLVARPDKI-SGADINAICQE 371 (408)
T ss_pred -chhhhhhhHHhh-------------------------------hhcccCCccc--CHHHHhcCcccc-chhhHHHHHHH
Confidence 444433232211 1112233322 11111 222222 22233344556
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
|..+|-.++|-.|...|+++|..-+..
T Consensus 372 agm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 372 AGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 666777788889999999999876643
No 100
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=163.85 Aligned_cols=216 Identities=18% Similarity=0.166 Sum_probs=132.1
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcE-EEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gV-LL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~ 159 (603)
.+..+++|..|++||||+.++..|.-+.......|. ||+||+|||||++||.|++.+. |... .+.
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-----------ce~~~~~~pC 73 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-----------CEQGVTATPC 73 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-----------CccCCCCCCC
Confidence 345578999999999999999988665555456675 8999999999999999999873 4311 122
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
..|..|..... . ...-++.+.... -.|.-++. .+... ..+.| ......|+||||+++|+..
T Consensus 74 g~C~sC~~i~~---g-------~~~DviEidAas----~~kVDdIR-eLie~-v~~~P---~~gk~KViIIDEAh~LT~e 134 (944)
T PRK14949 74 GVCSSCVEIAQ---G-------RFVDLIEVDAAS----RTKVDDTR-ELLDN-VQYRP---SRGRFKVYLIDEVHMLSRS 134 (944)
T ss_pred CCchHHHHHhc---C-------CCceEEEecccc----ccCHHHHH-HHHHH-HHhhh---hcCCcEEEEEechHhcCHH
Confidence 23333432110 0 011233332210 01111111 11100 01111 1234569999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.||..|++.. .++++|.+|| +...|.+.|+.|+..+ .+. |...++..+.+..+..
T Consensus 135 AqNALLKtLEEPP-------------~~vrFILaTT-e~~kLl~TIlSRCq~f-~fk-pLs~eEI~~~L~~il~------ 192 (944)
T PRK14949 135 SFNALLKTLEEPP-------------EHVKFLLATT-DPQKLPVTVLSRCLQF-NLK-SLTQDEIGTQLNHILT------ 192 (944)
T ss_pred HHHHHHHHHhccC-------------CCeEEEEECC-CchhchHHHHHhheEE-eCC-CCCHHHHHHHHHHHHH------
Confidence 9999999999742 2445555555 5566888999998544 665 5555544433332111
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
. ..+.++++++..|+.++ +. ++|..+.++..+
T Consensus 193 -------------------~----EgI~~edeAL~lIA~~S---~G-d~R~ALnLLdQa 224 (944)
T PRK14949 193 -------------------Q----EQLPFEAEALTLLAKAA---NG-SMRDALSLTDQA 224 (944)
T ss_pred -------------------H----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH
Confidence 0 24778888888887764 22 478888877533
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2e-14 Score=161.71 Aligned_cols=233 Identities=21% Similarity=0.223 Sum_probs=144.8
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCC-cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
...|++|..|++||||+++++.|..+....... .+||+||+|||||++|+.|++.+ ||... .+..
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-----------nC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-----------NCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------cccCCCCCCCCc
Confidence 455789999999999999999996655544444 48999999999999999999986 34322 1223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.|..|..... + ....++.+.... -.|.-++...+.. ..+.| ..+...|+||||++.|+...
T Consensus 75 ~C~sCr~i~~----g------~~~DvlEidaAs----~~gVd~IRelle~--a~~~P---~~gk~KVIIIDEad~Ls~~A 135 (709)
T PRK08691 75 VCQSCTQIDA----G------RYVDLLEIDAAS----NTGIDNIREVLEN--AQYAP---TAGKYKVYIIDEVHMLSKSA 135 (709)
T ss_pred ccHHHHHHhc----c------CccceEEEeccc----cCCHHHHHHHHHH--HHhhh---hhCCcEEEEEECccccCHHH
Confidence 4444443110 0 011233332111 0111011111100 00111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.||..|++.. .++.+|.++| +...+...+++|+-.+ .+. +...++..+.+..+
T Consensus 136 ~NALLKtLEEPp-------------~~v~fILaTt-d~~kL~~TIrSRC~~f-~f~-~Ls~eeI~~~L~~I--------- 190 (709)
T PRK08691 136 FNAMLKTLEEPP-------------EHVKFILATT-DPHKVPVTVLSRCLQF-VLR-NMTAQQVADHLAHV--------- 190 (709)
T ss_pred HHHHHHHHHhCC-------------CCcEEEEEeC-CccccchHHHHHHhhh-hcC-CCCHHHHHHHHHHH---------
Confidence 999999999632 2456677777 6667888899998433 555 44555433333221
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
.. ...+.++++++.+|++.+. .++|..++++..+..+ |...|+.++|...+.
T Consensus 191 ----------------l~----kEgi~id~eAL~~Ia~~A~----GslRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 191 ----------------LD----SEKIAYEPPALQLLGRAAA----GSMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred ----------------HH----HcCCCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 11 1247899999999988762 2679998888554432 455788887776543
No 102
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-14 Score=161.59 Aligned_cols=218 Identities=22% Similarity=0.246 Sum_probs=153.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhc-------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
....+.|.+|.|.+.+|..+.-+... +...+|||+||||||||++|++++..+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-------------- 300 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-------------- 300 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--------------
Confidence 45678899999999988877322211 234589999999999999999999876
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+......+.|+|.. ++.++ -++..| ..+|||||
T Consensus 301 ----------------------------~~~fi~v~~~~l~sk~vGes--ek~ir--------~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 301 ----------------------------RSRFISVKGSELLSKWVGES--EKNIR--------ELFEKARKLAPSIIFID 342 (494)
T ss_pred ----------------------------CCeEEEeeCHHHhccccchH--HHHHH--------HHHHHHHcCCCcEEEEE
Confidence 67898887777778888863 23222 244444 36899999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+- ..+++.||..|+.-.. -.++++|+||| .+..+++++++ ||+..+.++ +
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~-----------~~~v~vi~aTN-~p~~ld~a~lR~gRfd~~i~v~-~ 409 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK-----------AEGVLVIAATN-RPDDLDPALLRPGRFDRLIYVP-L 409 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHHHhcCCCc-----------cCceEEEecCC-CccccCHhhcccCccceEeecC-C
Confidence 999871 2688888888863221 11478999999 88888999999 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
++.++|.+|+.........+ -..+-.++.++.... + .+......+++-|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~----------------------------~~~~~~~~~l~~~t~--~-~sgadi~~i~~ea 458 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP----------------------------LAEDVDLEELAEITE--G-YSGADIAALVREA 458 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc----------------------------chhhhhHHHHHHHhc--C-CCHHHHHHHHHHH
Confidence 69999999987643311100 011222333333221 1 2445555666667
Q ss_pred HHHHHHcC-CCCCcHHHHHHHHHH
Q 007444 379 KCLAALEG-REKVNVDDLKKAVEL 401 (603)
Q Consensus 379 ra~Aal~g-r~~Vt~eDv~~A~~l 401 (603)
...|..+. ...|+.+|+.+|++-
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 459 ALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHhccCCccHHHHHHHHHh
Confidence 76776666 778999999999887
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.6e-14 Score=161.35 Aligned_cols=231 Identities=23% Similarity=0.233 Sum_probs=140.6
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~ 159 (603)
....|++|..|++||||+.++..|.-+.......| +||+||+|+|||++|+.+++.+ ||... .|.
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L-----------~c~~~~~~~pC 73 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL-----------NCETGITATPC 73 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------hhccCCCCCCC
Confidence 34557899999999999999999876555444556 5899999999999999999987 45321 233
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
.-|..|..... + ....|+.+.... -.|.-|+.. +... ..+.| ......|+||||+++|+.+
T Consensus 74 g~C~~C~~i~~----g------~~~D~ieidaas----~~~VddiR~-li~~-~~~~p---~~g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 74 GECDNCREIEQ----G------RFVDLIEIDAAS----RTKVEDTRE-LLDN-VQYAP---ARGRFKVYLIDEVHMLSRH 134 (647)
T ss_pred CCCHHHHHHHc----C------CCCCceeecccc----cCCHHHHHH-HHHH-HHhhh---hcCCCEEEEEechHhCCHH
Confidence 34455544211 0 123344443221 012111111 1100 01111 1223459999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.+|.||..|++-- .++.+|.+|+ +...|.+.+++|+ ..+.+. +.+.++..+.+.....
T Consensus 135 a~NALLKtLEEPp-------------~~v~FIL~Tt-~~~kLl~TI~SRC-~~~~f~-~Ls~~ei~~~L~~il~------ 192 (647)
T PRK07994 135 SFNALLKTLEEPP-------------EHVKFLLATT-DPQKLPVTILSRC-LQFHLK-ALDVEQIRQQLEHILQ------ 192 (647)
T ss_pred HHHHHHHHHHcCC-------------CCeEEEEecC-CccccchHHHhhh-eEeeCC-CCCHHHHHHHHHHHHH------
Confidence 9999999999842 2445555565 5667889999996 444776 5555544444332211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
. ..+.++++++..|+..+ +. +.|..+.++..+- + + |...|+.++|..
T Consensus 193 -------------------~----e~i~~e~~aL~~Ia~~s---~G-s~R~Al~lldqai--a-~-~~~~it~~~v~~ 239 (647)
T PRK07994 193 -------------------A----EQIPFEPRALQLLARAA---DG-SMRDALSLTDQAI--A-S-GNGQVTTDDVSA 239 (647)
T ss_pred -------------------H----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--H-h-cCCCcCHHHHHH
Confidence 0 14678888887776653 22 5788888775432 2 2 333466655544
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.2e-14 Score=157.41 Aligned_cols=244 Identities=17% Similarity=0.225 Sum_probs=155.5
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC-----
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP----- 155 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~----- 155 (603)
..++..+++|..|++++||+.+++.|..+..... .+++||+||+|||||++|+.+++.+. |..
T Consensus 8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-----------c~~~~~~~ 76 (507)
T PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-----------CSALITEN 76 (507)
T ss_pred ccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-----------CccccccC
Confidence 4556667899999999999999998866444322 35699999999999999999999873 321
Q ss_pred --CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEeccc
Q 007444 156 --TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (603)
Q Consensus 156 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi 233 (603)
..+...|..|..... + ....++++..... .|.-|+...+. .. ...| ..++..|++|||+
T Consensus 77 ~~~~~C~~C~~C~~i~~----~------~h~Dv~eidaas~----~~vd~Ir~iie-~a-~~~P---~~~~~KVvIIDEa 137 (507)
T PRK06645 77 TTIKTCEQCTNCISFNN----H------NHPDIIEIDAASK----TSVDDIRRIIE-SA-EYKP---LQGKHKIFIIDEV 137 (507)
T ss_pred cCcCCCCCChHHHHHhc----C------CCCcEEEeeccCC----CCHHHHHHHHH-HH-Hhcc---ccCCcEEEEEECh
Confidence 123334444443211 0 1334555543211 12112221111 10 1111 1235679999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 234 ~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
+.|+.+.++.|+..|++. |..+++|.+++ +...+.+.+.+|+. .+++. +.+.++..+++.....
T Consensus 138 ~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTt-e~~kI~~tI~SRc~-~~ef~-~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 138 HMLSKGAFNALLKTLEEP-------------PPHIIFIFATT-EVQKIPATIISRCQ-RYDLR-RLSFEEIFKLLEYITK 201 (507)
T ss_pred hhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeC-ChHHhhHHHHhcce-EEEcc-CCCHHHHHHHHHHHHH
Confidence 999999999999999863 23456666665 55568889999985 44776 5566655555443211
Q ss_pred HHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHH
Q 007444 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (603)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~e 393 (603)
...+.++++++.+|+..+ +. +.|..++++..+..++.-. ...||.+
T Consensus 202 -----------------------------~egi~ie~eAL~~Ia~~s---~G-slR~al~~Ldkai~~~~~~-~~~It~~ 247 (507)
T PRK06645 202 -----------------------------QENLKTDIEALRIIAYKS---EG-SARDAVSILDQAASMSAKS-DNIISPQ 247 (507)
T ss_pred -----------------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhhccC-CCCcCHH
Confidence 124789999999887754 33 6899999887665543211 3369999
Q ss_pred HHHHHHHHHcCC
Q 007444 394 DLKKAVELVILP 405 (603)
Q Consensus 394 Dv~~A~~lvl~h 405 (603)
+|.+.+..+...
T Consensus 248 ~V~~llg~~~~~ 259 (507)
T PRK06645 248 VINQMLGLVDSS 259 (507)
T ss_pred HHHHHHCCCCHH
Confidence 998876554443
No 105
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.59 E-value=1.6e-14 Score=151.85 Aligned_cols=216 Identities=20% Similarity=0.190 Sum_probs=144.6
Q ss_pred CCC-CC-cccccHHHHHHHHHh----hh--ccCCCcEEEECCCCChHHHHHHHHHHhCCCC--------eeecc----cc
Q 007444 91 FFP-LA-AVVGQDAIKTALLLG----AI--DREIGGIAISGRRGTAKTVMARGLHAILPPI--------EVVVG----SI 150 (603)
Q Consensus 91 ~~~-f~-~IvGq~~~k~aL~la----av--~p~~~gVLL~GppGTGKT~lArala~~l~~~--------~~~~~----~~ 150 (603)
.|+ |+ +|+|+++++..+.-. +. ......++|.||||+||||+|++|+..+..- -.+.+ |+
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 344 56 899999998888321 11 2234558999999999999999999998542 23444 66
Q ss_pred ccCCCCC---------------------CCccccccccccccccccccccc-ccCCCe--------EEcC----CCCccc
Q 007444 151 ANADPTC---------------------PDEWEDGLDEKAEYDTAGNLKTQ-IARSPF--------VQIP----LGVTED 196 (603)
Q Consensus 151 ~n~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~-~~~~pf--------v~l~----~~~~~~ 196 (603)
++-+|-. ...+|..|+.++...-.+.+... .....| ...+ .+....
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~ 204 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS 204 (361)
T ss_pred CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence 6655431 12234555554421122222110 000111 0111 122345
Q ss_pred cccccccchhccccC---ccccc-ccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEE
Q 007444 197 RLIGSVDVEESVKTG---TTVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (603)
Q Consensus 197 ~l~G~ldl~~~l~~g---~~~~~-~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIa 272 (603)
.|+|.+|+.+....+ ...+. .|.|..||+||+-|+|+..++.+.++.||.+++++.+.+. |.-...|.+.++|+
T Consensus 205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia 282 (361)
T smart00763 205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIA 282 (361)
T ss_pred HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEE
Confidence 889999988655221 22344 4999999999999999999999999999999999996654 44346777889999
Q ss_pred EeCCCC------CCccHHHHhhhcccccccCCCCHHHHHHHHH
Q 007444 273 TYNPEE------GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 273 ttNp~e------g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
++|+.+ ++..++|+|||.++ .++++.+...-.+|.+
T Consensus 283 ~sNe~e~~~~~~~k~~eaf~dR~~~i-~vpY~l~~~~E~~Iy~ 324 (361)
T smart00763 283 HSNESEWQRFKSNKKNEALLDRIIKV-KVPYCLRVSEEAQIYE 324 (361)
T ss_pred eCCHHHHhhhhccccchhhhhceEEE-eCCCcCCHHHHHHHHH
Confidence 999865 45579999999955 8988887777666654
No 106
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.1e-15 Score=164.50 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=121.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
+-+.+.|++|-|.+++|..++-..--| ...|||||||||||||.+|+|+|.++
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------------- 729 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------------- 729 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------------
Confidence 356788999999999999885322111 24679999999999999999999876
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDE 232 (603)
...|+.+-.-....+++|.- |+.++ -.+.+ |..+|||+||
T Consensus 730 ---------------------------sL~FlSVKGPELLNMYVGqS--E~NVR--------~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 730 ---------------------------SLNFLSVKGPELLNMYVGQS--EENVR--------EVFERARSAAPCVIFFDE 772 (953)
T ss_pred ---------------------------eeeEEeecCHHHHHHHhcch--HHHHH--------HHHHHhhccCCeEEEecc
Confidence 45677776666677888853 22222 23333 4678999999
Q ss_pred cccCCH-------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccC
Q 007444 233 INLLDE-------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (603)
Q Consensus 233 i~~l~~-------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~ 297 (603)
++.+.+ .++.+||..||. .+..-...+.|||+|| .+.-|+|+|++ ||+..|++..
T Consensus 773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDg---------ls~~~s~~VFViGATN-RPDLLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDG---------LSDSSSQDVFVIGATN-RPDLLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred ccccCccCCCCCCccccHHHHHHHHHHHhhc---------ccCCCCCceEEEecCC-CccccChhhcCCCccceeEEecC
Confidence 999843 578888888873 3322223688999999 77788888887 9999999998
Q ss_pred CCCHHHHHHHHHH
Q 007444 298 PMTFEDRVAAVGI 310 (603)
Q Consensus 298 p~~~e~r~eI~~~ 310 (603)
+.+.+.+..|++.
T Consensus 843 ~~d~esk~~vL~A 855 (953)
T KOG0736|consen 843 NEDAESKLRVLEA 855 (953)
T ss_pred CccHHHHHHHHHH
Confidence 7888888878763
No 107
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.7e-14 Score=157.02 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=145.3
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
+...+++|..|++|+||+.++..|..+.......| +||+||+|||||++|+.+++.+ +|........|
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L-----------~c~~~~~~~pC 73 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL-----------NCKTGVTAEPC 73 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCCCCCCCCC
Confidence 34567899999999999999998876554434444 7899999999999999999976 34322222233
Q ss_pred ---ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 163 ---DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 163 ---~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
..|..... . ....++.+.... -.|.-++..-+ ... ...| ..++..|+||||+++++.+
T Consensus 74 g~C~sC~~i~~---~-------~~~dlieidaas----~~gvd~ir~ii-~~~-~~~p---~~g~~kViIIDEa~~ls~~ 134 (546)
T PRK14957 74 NKCENCVAINN---N-------SFIDLIEIDAAS----RTGVEETKEIL-DNI-QYMP---SQGRYKVYLIDEVHMLSKQ 134 (546)
T ss_pred cccHHHHHHhc---C-------CCCceEEeeccc----ccCHHHHHHHH-HHH-Hhhh---hcCCcEEEEEechhhccHH
Confidence 33332110 0 122344432211 12211111111 000 0011 2235569999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.||..|++.- ..+.+|.+|+ +...+.+.+++|+... .+. +.+.++..+.+...
T Consensus 135 a~naLLK~LEepp-------------~~v~fIL~Tt-d~~kil~tI~SRc~~~-~f~-~Ls~~eI~~~L~~i-------- 190 (546)
T PRK14957 135 SFNALLKTLEEPP-------------EYVKFILATT-DYHKIPVTILSRCIQL-HLK-HISQADIKDQLKII-------- 190 (546)
T ss_pred HHHHHHHHHhcCC-------------CCceEEEEEC-ChhhhhhhHHHheeeE-EeC-CCCHHHHHHHHHHH--------
Confidence 9999999999752 2445666665 5666777899998544 776 55555433333211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
... ..+.++++++.+|+..+ +. +.|..++++..+.. +.+ ..|+.++|++++
T Consensus 191 -----------------l~~----egi~~e~~Al~~Ia~~s---~G-dlR~alnlLek~i~---~~~-~~It~~~V~~~l 241 (546)
T PRK14957 191 -----------------LAK----ENINSDEQSLEYIAYHA---KG-SLRDALSLLDQAIS---FCG-GELKQAQIKQML 241 (546)
T ss_pred -----------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcc-CCCCHHHHHHHH
Confidence 111 14789999999988775 22 57988888865543 344 568888888754
Q ss_pred H
Q 007444 400 E 400 (603)
Q Consensus 400 ~ 400 (603)
.
T Consensus 242 ~ 242 (546)
T PRK14957 242 G 242 (546)
T ss_pred c
Confidence 3
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=5.7e-14 Score=148.04 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=137.7
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
++..|++|..|++|+||++++..|.-.+.+....++||+||||||||++|+++++.+.. .. |
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-----------~~-----~-- 63 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-----------PN-----Y-- 63 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-----------cc-----C--
Confidence 35567899999999999999998865555556678999999999999999999988621 00 0
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccc-hhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDV-EESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl-~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
...++.++. ++.+ | +|. ...+..... ....+......|++|||++.+....++
T Consensus 64 -------------------~~~~~eln~--sd~~--~-~~~vr~~i~~~~~--~~~~~~~~~~kviiiDE~d~lt~~aq~ 117 (319)
T PLN03025 64 -------------------KEAVLELNA--SDDR--G-IDVVRNKIKMFAQ--KKVTLPPGRHKIVILDEADSMTSGAQQ 117 (319)
T ss_pred -------------------ccceeeecc--cccc--c-HHHHHHHHHHHHh--ccccCCCCCeEEEEEechhhcCHHHHH
Confidence 111222222 1111 1 110 100000000 000011123469999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|+..|+... ....+|.++| ....+.++|.+|+. .+.+. +++.++..+.+...
T Consensus 118 aL~~~lE~~~-------------~~t~~il~~n-~~~~i~~~L~SRc~-~i~f~-~l~~~~l~~~L~~i----------- 170 (319)
T PLN03025 118 ALRRTMEIYS-------------NTTRFALACN-TSSKIIEPIQSRCA-IVRFS-RLSDQEILGRLMKV----------- 170 (319)
T ss_pred HHHHHHhccc-------------CCceEEEEeC-CccccchhHHHhhh-cccCC-CCCHHHHHHHHHHH-----------
Confidence 9999998522 1234666777 34566789999975 44776 44555544443321
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
. + ...+.++++++.+|+..+ +. ..|..++.++.+. .|...|+.++|...
T Consensus 171 --------------~--~--~egi~i~~~~l~~i~~~~---~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~~ 219 (319)
T PLN03025 171 --------------V--E--AEKVPYVPEGLEAIIFTA---DG-DMRQALNNLQATH-----SGFGFVNQENVFKV 219 (319)
T ss_pred --------------H--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH-----hcCCCCCHHHHHHH
Confidence 1 1 125789999999987764 22 6799999987332 24557999998754
No 109
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-14 Score=142.29 Aligned_cols=196 Identities=22% Similarity=0.273 Sum_probs=137.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
...|||||||||||||.+||++++.. ...|+.++.+..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht------------------------------------------~c~firvsgsel 217 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT------------------------------------------DCTFIRVSGSEL 217 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc------------------------------------------ceEEEEechHHH
Confidence 45789999999999999999999864 457888888877
Q ss_pred cccccccccchhccccCcccccccchhcc---cCceEEecccccC-----------CHHHHHHHHHHHHcCceeEeeCCe
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGI 260 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~ 260 (603)
...++|. |.+-. .-+|..| ...|+|.|||+.+ +.++|...|.+++.-. |.
T Consensus 218 vqk~ige---------gsrmv-relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld------gf 281 (404)
T KOG0728|consen 218 VQKYIGE---------GSRMV-RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD------GF 281 (404)
T ss_pred HHHHhhh---------hHHHH-HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc------cc
Confidence 8888885 54332 2355444 3579999999987 5678999988887532 33
Q ss_pred eeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHH
Q 007444 261 SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (603)
Q Consensus 261 s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ 338 (603)
..+ .++-+|.+|| .-..|+++|++ |++..|+++ |++.+.|.+|++....-
T Consensus 282 eat--knikvimatn-ridild~allrpgridrkiefp-~p~e~ar~~ilkihsrk------------------------ 333 (404)
T KOG0728|consen 282 EAT--KNIKVIMATN-RIDILDPALLRPGRIDRKIEFP-PPNEEARLDILKIHSRK------------------------ 333 (404)
T ss_pred ccc--cceEEEEecc-ccccccHhhcCCCcccccccCC-CCCHHHHHHHHHHhhhh------------------------
Confidence 322 3688999999 66778899997 999999998 77999999998753211
Q ss_pred HHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 339 ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
..+...+ -+..++...+..|.-..-.+..-|.-+|..+-|-.||.+|++-|+.-|+..
T Consensus 334 -------mnl~rgi--~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 334 -------MNLTRGI--NLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred -------hchhccc--CHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 0111111 112223333333444444455566667777777889999999998887653
No 110
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=3.1e-14 Score=165.54 Aligned_cols=230 Identities=19% Similarity=0.198 Sum_probs=150.6
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++-.++.|+|+++....+.-........++||+||||||||+++++++..+-..
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~------------------------- 230 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEG------------------------- 230 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhC-------------------------
Confidence 3566789999999988877543444466789999999999999999999876210
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcc---cCceEEecccccCC------
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLLD------ 237 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~~l~------ 237 (603)
..+....+..++.++.+... ..+.|.+ +..+ ..++..+ .+.|||||||+.+-
T Consensus 231 -------~~p~~l~~~~~~~~~~~~l~a~~~~~g~~--e~~l--------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~ 293 (731)
T TIGR02639 231 -------KVPENLKNAKIYSLDMGSLLAGTKYRGDF--EERL--------KAVVSEIEKEPNAILFIDEIHTIVGAGATS 293 (731)
T ss_pred -------CCchhhcCCeEEEecHHHHhhhccccchH--HHHH--------HHHHHHHhccCCeEEEEecHHHHhccCCCC
Confidence 00011123455555543222 2333321 1111 1233322 35699999999883
Q ss_pred ---HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 238 ---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 238 ---~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
.++++.|+..++.|. +.+||+||+++. +.+++|.+||.. |.+. +++.+++.+|++.
T Consensus 294 ~~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~il~~ 356 (731)
T TIGR02639 294 GGSMDASNLLKPALSSGK---------------LRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVG-EPSIEETVKILKG 356 (731)
T ss_pred CccHHHHHHHHHHHhCCC---------------eEEEEecCHHHHHHHhhhhHHHHHhCce-EEeC-CCCHHHHHHHHHH
Confidence 346788888888764 578999997553 568999999985 6888 5589999988875
Q ss_pred HHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHHHHHHcC--
Q 007444 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GHRAELYAARVAKCLAALEG-- 386 (603)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~--s~Ra~i~llr~Ara~Aal~g-- 386 (603)
.... .+....+.++++++..++.++.+.-.. -.+..+.++..|.+.+.+..
T Consensus 357 ~~~~-------------------------~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~ 411 (731)
T TIGR02639 357 LKEK-------------------------YEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA 411 (731)
T ss_pred HHHH-------------------------HHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc
Confidence 4322 111224678888888888877654321 24556777776666555542
Q ss_pred --CCCCcHHHHHHHHHHH
Q 007444 387 --REKVNVDDLKKAVELV 402 (603)
Q Consensus 387 --r~~Vt~eDv~~A~~lv 402 (603)
...|+.+||..++...
T Consensus 412 ~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 412 KKKANVSVKDIENVVAKM 429 (731)
T ss_pred ccccccCHHHHHHHHHHH
Confidence 2358888888887754
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.1e-13 Score=155.38 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=145.0
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEWE 162 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~~~ 162 (603)
.+++|..|++|+||+.+++.|..........| +||+||+|||||++|+.+++.+ ||... .|..-|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL-----------NCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------ccccCCCCCccccc
Confidence 46899999999999999999876655555667 6999999999999999999876 45322 133344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
..|.... .+.. ....++.+..... +++|--+.+.+- ..+.| ..+...|++|||++.|....++
T Consensus 74 ~~C~~i~-~~~~-------~~~dvieidaas~-----~gvd~iRel~~~-~~~~P---~~~~~KVvIIDEah~Lt~~A~N 136 (584)
T PRK14952 74 ESCVALA-PNGP-------GSIDVVELDAASH-----GGVDDTRELRDR-AFYAP---AQSRYRIFIVDEAHMVTTAGFN 136 (584)
T ss_pred HHHHHhh-cccC-------CCceEEEeccccc-----cCHHHHHHHHHH-HHhhh---hcCCceEEEEECCCcCCHHHHH
Confidence 4444311 0000 1234555533211 112211111110 01111 1245579999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.||..|++- |.++++|.+++ +...+.+.+..|.. ++.+. +...++..+.+..
T Consensus 137 ALLK~LEEp-------------p~~~~fIL~tt-e~~kll~TI~SRc~-~~~F~-~l~~~~i~~~L~~------------ 188 (584)
T PRK14952 137 ALLKIVEEP-------------PEHLIFIFATT-EPEKVLPTIRSRTH-HYPFR-LLPPRTMRALIAR------------ 188 (584)
T ss_pred HHHHHHhcC-------------CCCeEEEEEeC-ChHhhHHHHHHhce-EEEee-CCCHHHHHHHHHH------------
Confidence 999999973 23456666665 45678889999953 44666 4444433323221
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
|.. ...+.++++++.+|+..+ + .+.|..++++... +.+.+...||.+++...
T Consensus 189 -------------i~~----~egi~i~~~al~~Ia~~s---~-GdlR~aln~Ldql---~~~~~~~~It~~~v~~l 240 (584)
T PRK14952 189 -------------ICE----QEGVVVDDAVYPLVIRAG---G-GSPRDTLSVLDQL---LAGAADTHVTYQRALGL 240 (584)
T ss_pred -------------HHH----HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH---HhccCCCCcCHHHHHHH
Confidence 111 114679999988886653 2 2679888888654 33455667888777655
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=7e-14 Score=162.46 Aligned_cols=232 Identities=21% Similarity=0.145 Sum_probs=139.6
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
+..|+++..|++||||+.+++.|..+..+....| +||+||+|||||++|+.|++.| ||... .+..
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-----------~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-----------NCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CcccCCCCCCCc
Confidence 4457899999999999999999866555445566 7999999999999999999987 45322 1223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
-|..|...... .. ....|+.+..... .++|--+.+.+. ..+.+ ...+..|+||||++.|+.+.
T Consensus 74 ~C~sC~~~~~g-~~-------~~~dv~eidaas~-----~~Vd~iR~l~~~-~~~~p---~~~~~KV~IIDEad~lt~~a 136 (824)
T PRK07764 74 ECDSCVALAPG-GP-------GSLDVTEIDAASH-----GGVDDARELRER-AFFAP---AESRYKIFIIDEAHMVTPQG 136 (824)
T ss_pred ccHHHHHHHcC-CC-------CCCcEEEeccccc-----CCHHHHHHHHHH-HHhch---hcCCceEEEEechhhcCHHH
Confidence 44555432110 00 1234454432110 112211111110 01111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+|.||..|++-- ..++||.++| +...|.+.|.+|+..+ .+. +...+...+.+...
T Consensus 137 ~NaLLK~LEEpP-------------~~~~fIl~tt-~~~kLl~TIrSRc~~v-~F~-~l~~~~l~~~L~~i--------- 191 (824)
T PRK07764 137 FNALLKIVEEPP-------------EHLKFIFATT-EPDKVIGTIRSRTHHY-PFR-LVPPEVMRGYLERI--------- 191 (824)
T ss_pred HHHHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhheeEE-Eee-CCCHHHHHHHHHHH---------
Confidence 999999999742 2455666665 4445778899997655 665 33444433333211
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
. ....+.++++++.+|+.++ +. +.|..+.++... .++.+...||.+++.
T Consensus 192 ----------------l----~~EGv~id~eal~lLa~~s---gG-dlR~Al~eLEKL---ia~~~~~~IT~e~V~ 240 (824)
T PRK07764 192 ----------------C----AQEGVPVEPGVLPLVIRAG---GG-SVRDSLSVLDQL---LAGAGPEGVTYERAV 240 (824)
T ss_pred ----------------H----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HhhcCCCCCCHHHHH
Confidence 0 0124678888888776664 22 567777666432 234445557666544
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.7e-14 Score=156.76 Aligned_cols=232 Identities=19% Similarity=0.236 Sum_probs=144.1
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC-------
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT------- 156 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~------- 156 (603)
+..|++|..|++||||+.+++.|.-+.......| +||+|++|||||++|+.+++.+ ||...
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-----------nC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-----------NCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCcccccCCC
Confidence 4557899999999999999999966555444555 5999999999999999999986 55311
Q ss_pred -CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEeccccc
Q 007444 157 -CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (603)
Q Consensus 157 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~ 235 (603)
.|..-|..|..... + ....|+.+.... . .|.-++...+. . ..+.| ......|++|||++.
T Consensus 75 ~~pCg~C~~C~~i~~----g------~h~D~~eldaas--~--~~Vd~iReli~-~-~~~~p---~~g~~KV~IIDEvh~ 135 (618)
T PRK14951 75 ATPCGVCQACRDIDS----G------RFVDYTELDAAS--N--RGVDEVQQLLE-Q-AVYKP---VQGRFKVFMIDEVHM 135 (618)
T ss_pred CCCCCccHHHHHHHc----C------CCCceeecCccc--c--cCHHHHHHHHH-H-HHhCc---ccCCceEEEEEChhh
Confidence 23334444543210 0 123455543221 1 11111111111 0 01111 112345999999999
Q ss_pred CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 236 l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
|+.+.+|.||..|++.- ..+.+|.+|+ +...+...+++|+..+ .+. +.+.++..+.+...
T Consensus 136 Ls~~a~NaLLKtLEEPP-------------~~~~fIL~Tt-d~~kil~TIlSRc~~~-~f~-~Ls~eei~~~L~~i---- 195 (618)
T PRK14951 136 LTNTAFNAMLKTLEEPP-------------EYLKFVLATT-DPQKVPVTVLSRCLQF-NLR-PMAPETVLEHLTQV---- 195 (618)
T ss_pred CCHHHHHHHHHhcccCC-------------CCeEEEEEEC-CchhhhHHHHHhceee-ecC-CCCHHHHHHHHHHH----
Confidence 99999999999998742 3445666665 5666777899997444 776 44555443333321
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
.. ...+.++++++.+|+..+. .++|..++++..+-. + |...||.++|
T Consensus 196 ---------------------~~----~egi~ie~~AL~~La~~s~----GslR~al~lLdq~ia---~-~~~~It~~~V 242 (618)
T PRK14951 196 ---------------------LA----AENVPAEPQALRLLARAAR----GSMRDALSLTDQAIA---F-GSGQLQEAAV 242 (618)
T ss_pred ---------------------HH----HcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHH---h-cCCCcCHHHH
Confidence 10 1257899999999887642 267888887643332 2 4456888887
Q ss_pred HHHH
Q 007444 396 KKAV 399 (603)
Q Consensus 396 ~~A~ 399 (603)
.+++
T Consensus 243 ~~~L 246 (618)
T PRK14951 243 RQML 246 (618)
T ss_pred HHHH
Confidence 7654
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.8e-13 Score=152.93 Aligned_cols=233 Identities=19% Similarity=0.198 Sum_probs=145.5
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
...+++|..|++|+||+++++.|..+.......| +||+||+|+|||++|+.+++.+ ||... .|..
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-----------NCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCC
Confidence 4456789999999999999999976666555556 6899999999999999999986 45322 2334
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.|..|...-. + ....++.+..... .|.-++.. +.+. ....| ...+..|+||||++.|+.+.
T Consensus 75 ~C~~C~~i~~----~------~~~d~~ei~~~~~----~~vd~ir~-l~~~-~~~~p---~~~~~kVvIIDEad~ls~~a 135 (527)
T PRK14969 75 VCSACLEIDS----G------RFVDLIEVDAASN----TQVDAMRE-LLDN-AQYAP---TRGRFKVYIIDEVHMLSKSA 135 (527)
T ss_pred CCHHHHHHhc----C------CCCceeEeecccc----CCHHHHHH-HHHH-HhhCc---ccCCceEEEEcCcccCCHHH
Confidence 4555543110 0 1123444432110 11111111 1100 01111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+|.||..+++.. ..+++|.+|| +...+.+.+++|+-.. .+. +.+.++..+.+..
T Consensus 136 ~naLLK~LEepp-------------~~~~fIL~t~-d~~kil~tI~SRc~~~-~f~-~l~~~~i~~~L~~---------- 189 (527)
T PRK14969 136 FNAMLKTLEEPP-------------EHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPPLIVSHLQH---------- 189 (527)
T ss_pred HHHHHHHHhCCC-------------CCEEEEEEeC-ChhhCchhHHHHHHHH-hcC-CCCHHHHHHHHHH----------
Confidence 999999998742 2455666665 5556667799997444 776 4444433322221
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
+.. ...+.++++++.+|+..+ +. +.|..++++..+-+ + |...|+.++|...+.
T Consensus 190 ---------------il~----~egi~~~~~al~~la~~s---~G-slr~al~lldqai~---~-~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 190 ---------------ILE----QENIPFDATALQLLARAA---AG-SMRDALSLLDQAIA---Y-GGGTVNESEVRAMLG 242 (527)
T ss_pred ---------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---h-cCCCcCHHHHHHHHC
Confidence 111 114778999988887764 22 57888888755433 2 566799998887654
No 115
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-14 Score=144.90 Aligned_cols=216 Identities=22% Similarity=0.268 Sum_probs=161.6
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC--
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-- 192 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-- 192 (603)
+..+|||.||+|.|||.|||.|..+-.. +.+ -..+||++++.
T Consensus 207 sr~p~ll~gptgagksflarriyelk~a-------------------------rhq-----------~sg~fvevncatl 250 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQA-------------------------RHQ-----------FSGAFVEVNCATL 250 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHH-------------------------HHh-----------cCCceEEEeeeee
Confidence 4578999999999999999999876321 111 15678876654
Q ss_pred ---CccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcE
Q 007444 193 ---VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPL 269 (603)
Q Consensus 193 ---~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~ 269 (603)
...+.|||++ ++.++|....+.|+|..|+||+||+|||..|..+-|..||.++++.. +..-|.......+|.
T Consensus 251 rgd~amsalfghv---kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekr--f~pfgsdr~v~sdfq 325 (531)
T COG4650 251 RGDTAMSALFGHV---KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKR--FYPFGSDRQVSSDFQ 325 (531)
T ss_pred cCchHHHHHHhhh---ccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhc--cCCCCCccccccchH
Confidence 3466899996 78999999999999999999999999999999999999999999988 556677777778999
Q ss_pred EEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhc
Q 007444 270 LIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL 343 (603)
Q Consensus 270 lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l 343 (603)
+|+.|..+ +|.++++|+-|+++. .+++|-...++.+|.. .+.| +-...|+...
T Consensus 326 liagtvrdlrq~vaeg~fredl~arinlw-tf~lpgl~qr~ediep-nldy-------------------elerha~~~g 384 (531)
T COG4650 326 LIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLPGLRQRQEDIEP-NLDY-------------------ELERHASLTG 384 (531)
T ss_pred HhhhhHHHHHHHHhccchHHHHHHhhhee-eeeccccccCccccCC-CccH-------------------HHHHHHHhhC
Confidence 99998763 789999999999998 7887766665555522 2222 1223455666
Q ss_pred cccCCCHHHHHHHHHH------HHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 344 KDVAIGREQLKYLVME------ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 344 ~~v~is~~~l~~L~~~------a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
..|.+..++....... .|.+|. |.+-..+ ..+|-+.....||.+-|++-
T Consensus 385 ~~vrfntearra~l~fa~spqa~w~gnf---relsasv---trmatlad~grit~~~ve~e 439 (531)
T COG4650 385 DSVRFNTEARRAWLAFATSPQATWRGNF---RELSASV---TRMATLADSGRITLDVVEDE 439 (531)
T ss_pred ceeeeehHHHHHHHHhccCcchhhcccH---HHHhHHH---HHHHHHhcCCceeHHHHHHH
Confidence 6777777776655543 466766 5443333 33566666777888777644
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2e-13 Score=154.04 Aligned_cols=238 Identities=20% Similarity=0.188 Sum_probs=151.4
Q ss_pred CccccccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---
Q 007444 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--- 156 (603)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~--- 156 (603)
....+..+++|..|++|+||+.+++.|.-+...... +.+||+||+|+|||++|+.+++.+ ||...
T Consensus 10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-----------~c~~~~~~ 78 (598)
T PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL-----------NYEGPDGD 78 (598)
T ss_pred cchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh-----------CcCCcccc
Confidence 355667788999999999999999998654443333 359999999999999999999987 34311
Q ss_pred -----CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEec
Q 007444 157 -----CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYID 231 (603)
Q Consensus 157 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~ID 231 (603)
++..+|..|...... .+..|+.+.... -.|.-|+.. +.+. ....| ..+...|++||
T Consensus 79 ~~~~~~~cg~c~~C~~i~~g----------~h~Dv~e~~a~s----~~gvd~IRe-Iie~-~~~~P---~~a~~KVvIID 139 (598)
T PRK09111 79 GGPTIDLCGVGEHCQAIMEG----------RHVDVLEMDAAS----HTGVDDIRE-IIES-VRYRP---VSARYKVYIID 139 (598)
T ss_pred CCCccccCcccHHHHHHhcC----------CCCceEEecccc----cCCHHHHHH-HHHH-HHhch---hcCCcEEEEEE
Confidence 244567767542211 133455543321 122212211 1110 01112 13456799999
Q ss_pred ccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 232 EINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 232 Ei~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
|++.|+.+.++.||..|++- |..++||.+++ +...+.+.+.+|+.. +.+. +++.++....+...
T Consensus 140 Ead~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tt-e~~kll~tI~SRcq~-~~f~-~l~~~el~~~L~~i 203 (598)
T PRK09111 140 EVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATT-EIRKVPVTVLSRCQR-FDLR-RIEADVLAAHLSRI 203 (598)
T ss_pred ChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeC-ChhhhhHHHHhheeE-EEec-CCCHHHHHHHHHHH
Confidence 99999999999999999974 23455666665 444577789999854 4666 34444333332211
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCc
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVN 391 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt 391 (603)
. ....+.++++++.+|+..+ +. +.|..+..+..+..+ |...||
T Consensus 204 -------------------------~----~kegi~i~~eAl~lIa~~a---~G-dlr~al~~Ldkli~~----g~g~It 246 (598)
T PRK09111 204 -------------------------A----AKEGVEVEDEALALIARAA---EG-SVRDGLSLLDQAIAH----GAGEVT 246 (598)
T ss_pred -------------------------H----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhh----cCCCcC
Confidence 1 1125789999999888765 22 678888887544322 445799
Q ss_pred HHHHHHHHHH
Q 007444 392 VDDLKKAVEL 401 (603)
Q Consensus 392 ~eDv~~A~~l 401 (603)
.++|.+.+.+
T Consensus 247 ~e~V~~llg~ 256 (598)
T PRK09111 247 AEAVRDMLGL 256 (598)
T ss_pred HHHHHHHhCC
Confidence 9999887654
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.54 E-value=7.1e-14 Score=154.13 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=109.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+..+|++|.|.+..+..+.-+.. .| ...||||+||||||||++|+++++.+...-.. +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-----~-- 247 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-----E-- 247 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-----c--
Confidence 3567889999999998887743321 11 24679999999999999999999987421000 0
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc-------cCce
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-------HRGV 227 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A-------~~gI 227 (603)
. .....|+.+........++|.. ++.+ .-++..+ ...|
T Consensus 248 -------------------~------~~~~~fl~v~~~eLl~kyvGet--e~~i--------r~iF~~Ar~~a~~g~p~I 292 (512)
T TIGR03689 248 -------------------T------GDKSYFLNIKGPELLNKYVGET--ERQI--------RLIFQRAREKASDGRPVI 292 (512)
T ss_pred -------------------c------CCceeEEeccchhhcccccchH--HHHH--------HHHHHHHHHHhhcCCCce
Confidence 0 0022344433333333444431 1111 0111111 3569
Q ss_pred EEecccccCC--------H----HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccc
Q 007444 228 LYIDEINLLD--------E----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINL 293 (603)
Q Consensus 228 L~IDEi~~l~--------~----~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v 293 (603)
|||||++.+- . .+++.||..|+.-. . ..++++|+||| .+..|+++|++ ||+..|
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~----~-------~~~ViVI~ATN-~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE----S-------LDNVIVIGASN-REDMIDPAILRPGRLDVKI 360 (512)
T ss_pred EEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc----c-------CCceEEEeccC-ChhhCCHhhcCccccceEE
Confidence 9999999762 1 24567777775321 1 12578999999 57789999998 999999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 007444 294 SADLPMTFEDRVAAVGIAT 312 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~ 312 (603)
.++ +++.++|.+|+....
T Consensus 361 ~~~-~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 361 RIE-RPDAEAAADIFSKYL 378 (512)
T ss_pred EeC-CCCHHHHHHHHHHHh
Confidence 998 458999999988653
No 118
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.9e-14 Score=150.76 Aligned_cols=160 Identities=22% Similarity=0.286 Sum_probs=120.2
Q ss_pred CCCCCcccccHHHHHHHHHh---hhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 91 FFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~la---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
...|.+|-|.+.....|+-. ...| -.+||||.||||||||+||++|+.++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------------------ 247 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------------------ 247 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------------------
Confidence 56799999999877776321 1122 14679999999999999999999987
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEeccccc
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~~ 235 (603)
..||+.++.....+.+.|.- |+.+ .-+|.+| ..+|+|||||+.
T Consensus 248 ------------------------~vPf~~isApeivSGvSGES--Ekki--------RelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 248 ------------------------GVPFLSISAPEIVSGVSGES--EKKI--------RELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------------------------CCceEeecchhhhcccCccc--HHHH--------HHHHHHHhccCCeEEEeecccc
Confidence 68999988777666666642 1111 2355555 357999999998
Q ss_pred CC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHH
Q 007444 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (603)
Q Consensus 236 l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e 302 (603)
+. ..++.+||..|++-.+. ...| ..++|||+|| .+..|+++|.+ ||+--|.+..| +..
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g------~~VlVIgATn-RPDslDpaLRRaGRFdrEI~l~vP-~e~ 364 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNE-KTKG------DPVLVIGATN-RPDSLDPALRRAGRFDREICLGVP-SET 364 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhccccc-ccCC------CCeEEEecCC-CCcccCHHHhccccccceeeecCC-chH
Confidence 74 46889999999875421 1112 2589999999 78888999987 99999999865 889
Q ss_pred HHHHHHHHH
Q 007444 303 DRVAAVGIA 311 (603)
Q Consensus 303 ~r~eI~~~~ 311 (603)
.|.+|++..
T Consensus 365 aR~~IL~~~ 373 (802)
T KOG0733|consen 365 AREEILRII 373 (802)
T ss_pred HHHHHHHHH
Confidence 999998743
No 119
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.53 E-value=6.2e-14 Score=160.46 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=146.9
Q ss_pred CCCCCCcccccHHHHHHHH--Hhh-hc---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALL--LGA-ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~--laa-v~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
....|.+|.|.+.++..+. +.. .+ .-..||||+||||||||+++++++..+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------------- 209 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------------- 209 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 3466899999998888772 111 11 124579999999999999999999876
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~ 234 (603)
+.+|+.+........++|. +....+ .++..+ ...|||||||+
T Consensus 210 -------------------------~~~f~~is~~~~~~~~~g~---------~~~~~~-~~f~~a~~~~P~IifIDEiD 254 (644)
T PRK10733 210 -------------------------KVPFFTISGSDFVEMFVGV---------GASRVR-DMFEQAKKAAPCIIFIDEID 254 (644)
T ss_pred -------------------------CCCEEEEehHHhHHhhhcc---------cHHHHH-HHHHHHHhcCCcEEEehhHh
Confidence 4567766555444444442 111111 123332 35799999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 235 ~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
.+.. .+++.||..|+.-. ....+++|+||| .+..++++|++ ||+..|.+..
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----------~~~~vivIaaTN-~p~~lD~Al~RpgRfdr~i~v~~- 321 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATN-RPDVLDPALLRPGRFDRQVVVGL- 321 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----------CCCCeeEEEecC-ChhhcCHHHhCCcccceEEEcCC-
Confidence 8732 35677777666321 123679999999 77788999997 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
|+.+.|.+|+..... .+.+.++. .+..++......+.+....+++.|
T Consensus 322 Pd~~~R~~Il~~~~~-------------------------------~~~l~~~~--d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 322 PDVRGREQILKVHMR-------------------------------RVPLAPDI--DAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CCHHHHHHHHHHHhh-------------------------------cCCCCCcC--CHHHHHhhCCCCCHHHHHHHHHHH
Confidence 488899999764321 11222111 011233334444678888889899
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
..+|+..++..|+.+|+.+|...+..
T Consensus 369 a~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 369 ALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 98899999999999999999987755
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.3e-13 Score=151.24 Aligned_cols=232 Identities=19% Similarity=0.195 Sum_probs=141.7
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc-
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW- 161 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~- 161 (603)
++..+++|..|++|+||+.++..|.-+..+.. ...+||+||+|||||++|+.|++.+ +|........
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L-----------~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL-----------NCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc-----------cccCCCCCCCC
Confidence 45567899999999999999988865444322 3558899999999999999999987 3432211223
Q ss_pred --cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 162 --EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 162 --~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
|..|..... + .+..++.+.... . .|.-++. .+..- ....+ ...+..|+||||++.|+..
T Consensus 74 g~C~sC~~i~~----g------~hpDv~eId~a~--~--~~Id~iR-~L~~~-~~~~p---~~g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 74 NTCEQCRKVTQ----G------MHVDVVEIDGAS--N--RGIDDAK-RLKEA-IGYAP---MEGRYKVFIIDEAHMLTRE 134 (624)
T ss_pred cccHHHHHHhc----C------CCCceEEEeccc--c--cCHHHHH-HHHHH-HHhhh---hcCCceEEEEEChHhCCHH
Confidence 333433211 0 123344442211 0 1111111 11100 00001 1234569999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.|+..|++.. .++++|.++| +...+...|++|+... .+. +.+.++..+++....
T Consensus 135 a~naLLk~LEEP~-------------~~~ifILaTt-~~~kll~TI~SRcq~i-~F~-pLs~~eL~~~L~~il------- 191 (624)
T PRK14959 135 AFNALLKTLEEPP-------------ARVTFVLATT-EPHKFPVTIVSRCQHF-TFT-RLSEAGLEAHLTKVL------- 191 (624)
T ss_pred HHHHHHHHhhccC-------------CCEEEEEecC-ChhhhhHHHHhhhhcc-ccC-CCCHHHHHHHHHHHH-------
Confidence 9999999998742 2456667666 5556667889998644 666 555555444433110
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
....+.+++++++.|+.++. .+.|..+.++..+ + ..|...|+.++|..+
T Consensus 192 ----------------------~~egi~id~eal~lIA~~s~----GdlR~Al~lLeql---l-~~g~~~It~d~V~~~ 240 (624)
T PRK14959 192 ----------------------GREGVDYDPAAVRLIARRAA----GSVRDSMSLLGQV---L-ALGESRLTIDGARGV 240 (624)
T ss_pred ----------------------HHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH---H-HhcCCCcCHHHHHHH
Confidence 01146799999998888652 2578888887633 2 235557888876543
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.52 E-value=5.2e-13 Score=141.12 Aligned_cols=234 Identities=16% Similarity=0.151 Sum_probs=134.4
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCee-eccccccCCCCCCCccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEV-VVGSIANADPTCPDEWE 162 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~-~~~~~~n~~~~~~~~~~ 162 (603)
.+..+++|..|++|+|++.++..|.-.+-++...++||+||||||||++|+++++.+..... .....+||.- ++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~-----~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD-----FF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh-----hh
Confidence 44557899999999999999999876665555568999999999999999999988742110 0001122200 00
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccccccc--------ccchhccccCcccccccchhcccCceEEecccc
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGS--------VDVEESVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~--------ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~ 234 (603)
..+...+ .....|. .+++. .+.-+.+........| ..+...+|+|||++
T Consensus 79 ~~~~~~~-----------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vlilDe~~ 135 (337)
T PRK12402 79 DQGKKYL-----------VEDPRFA---------HFLGTDKRIRSSKIDNFKHVLKEYASYRP---LSADYKTILLDNAE 135 (337)
T ss_pred hcchhhh-----------hcCcchh---------hhhhhhhhhccchHHHHHHHHHHHHhcCC---CCCCCcEEEEeCcc
Confidence 0000000 0000000 00110 0000000000000000 12345799999999
Q ss_pred cCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 235 LLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 235 ~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.++...++.|+..++... ....+|.++| ....+.+.|.+|+. .+.+. |++.++..+++....
T Consensus 136 ~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~-~~~~~~~~L~sr~~-~v~~~-~~~~~~~~~~l~~~~-- 197 (337)
T PRK12402 136 ALREDAQQALRRIMEQYS-------------RTCRFIIATR-QPSKLIPPIRSRCL-PLFFR-APTDDELVDVLESIA-- 197 (337)
T ss_pred cCCHHHHHHHHHHHHhcc-------------CCCeEEEEeC-ChhhCchhhcCCce-EEEec-CCCHHHHHHHHHHHH--
Confidence 999999999999988542 1234555554 23355677888874 34665 556665554443210
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eD 394 (603)
+ ...+.+++++++.|+.++ .+ +.|..+..+.. .+ . +...||.+|
T Consensus 198 -------------------------~--~~~~~~~~~al~~l~~~~-~g---dlr~l~~~l~~---~~-~-~~~~It~~~ 241 (337)
T PRK12402 198 -------------------------E--AEGVDYDDDGLELIAYYA-GG---DLRKAILTLQT---AA-L-AAGEITMEA 241 (337)
T ss_pred -------------------------H--HcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHH---HH-H-cCCCCCHHH
Confidence 1 124679999999999886 33 46777666542 22 2 334799999
Q ss_pred HHHHH
Q 007444 395 LKKAV 399 (603)
Q Consensus 395 v~~A~ 399 (603)
|.+++
T Consensus 242 v~~~~ 246 (337)
T PRK12402 242 AYEAL 246 (337)
T ss_pred HHHHh
Confidence 98754
No 122
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.52 E-value=6.5e-14 Score=167.94 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=102.3
Q ss_pred chhcc---cCceEEecccccCCHH-----HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--h
Q 007444 219 LLAEA---HRGVLYIDEINLLDEG-----ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--R 288 (603)
Q Consensus 219 ll~~A---~~gIL~IDEi~~l~~~-----~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--R 288 (603)
++..| ..+||||||||.+... .++.|+..|+..... ....+++|||||| .+..|+|+|++ |
T Consensus 1724 lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~--------~s~~~VIVIAATN-RPD~LDPALLRPGR 1794 (2281)
T CHL00206 1724 QFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER--------CSTRNILVIASTH-IPQKVDPALIAPNK 1794 (2281)
T ss_pred HHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc--------CCCCCEEEEEeCC-CcccCCHhHcCCCC
Confidence 44444 4689999999999643 367888888642100 0112578999999 78899999998 9
Q ss_pred hcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCch
Q 007444 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (603)
Q Consensus 289 f~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~ 368 (603)
|+..|.|..| +..+|.+++..... ...+.+.++.. .+..++....+.+.
T Consensus 1795 FDR~I~Ir~P-d~p~R~kiL~ILl~-----------------------------tkg~~L~~~~v-dl~~LA~~T~GfSG 1843 (2281)
T CHL00206 1795 LNTCIKIRRL-LIPQQRKHFFTLSY-----------------------------TRGFHLEKKMF-HTNGFGSITMGSNA 1843 (2281)
T ss_pred CCeEEEeCCC-CchhHHHHHHHHHh-----------------------------hcCCCCCcccc-cHHHHHHhCCCCCH
Confidence 9999999865 56666666442110 11222332211 12233444445577
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 369 RAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 369 Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
+..-.++..|.-+|...++..|+.+|++.|+..+.+.-
T Consensus 1844 ADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1844 RDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh
Confidence 88889999999999999999999999999999887753
No 123
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=2.4e-13 Score=160.36 Aligned_cols=209 Identities=26% Similarity=0.312 Sum_probs=136.5
Q ss_pred CcccccHHHHHHHHHhhh-------ccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||+.++.++..+.. +|. .+.+||.||+|||||++|++|+..+..-
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---------------------- 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---------------------- 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----------------------
Confidence 469999999998843222 221 3459999999999999999999987320
Q ss_pred cccccccccccccccccCCCeEEcCCCC-----ccccccccccchhccccCcccc-cccchhcc----cCceEEeccccc
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVF-QPGLLAEA----HRGVLYIDEINL 235 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~-----~~~~l~G~ldl~~~l~~g~~~~-~~Gll~~A----~~gIL~IDEi~~ 235 (603)
..+|+.+..+. ...+++|... |...+ +.|.|..+ ...|||||||+.
T Consensus 623 -----------------~~~~i~~d~s~~~~~~~~~~l~g~~~-------g~~g~~~~g~l~~~v~~~p~~vlllDeiek 678 (852)
T TIGR03346 623 -----------------EDAMVRIDMSEYMEKHSVARLIGAPP-------GYVGYEEGGQLTEAVRRKPYSVVLFDEVEK 678 (852)
T ss_pred -----------------CCcEEEEechhhcccchHHHhcCCCC-------CccCcccccHHHHHHHcCCCcEEEEecccc
Confidence 22333332221 2234444321 00000 11222222 235999999999
Q ss_pred CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------------------------CCCccHHHHhhhcc
Q 007444 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAI 291 (603)
Q Consensus 236 l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------------------eg~L~~~LldRf~l 291 (603)
+++++++.|+++|++|.++- ..|..+.+. +.++|+|+|.. .+.|+|+|++||+.
T Consensus 679 a~~~v~~~Ll~~l~~g~l~d-~~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~ 756 (852)
T TIGR03346 679 AHPDVFNVLLQVLDDGRLTD-GQGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE 756 (852)
T ss_pred CCHHHHHHHHHHHhcCceec-CCCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCe
Confidence 99999999999999998652 234444332 57899999961 13478999999998
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH--cCCCCchh
Q 007444 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHR 369 (603)
Q Consensus 292 ~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~--~~~v~s~R 369 (603)
++.+. |.+.++..+|+.+.+.+.. .++. ...-.+.++++++++|++..| .+|. |
T Consensus 757 IivF~-PL~~e~l~~I~~l~L~~l~-----------------~~l~---~~~~~l~i~~~a~~~L~~~~~~~~~ga---R 812 (852)
T TIGR03346 757 IVVFH-PLGREQIARIVEIQLGRLR-----------------KRLA---ERKITLELSDAALDFLAEAGYDPVYGA---R 812 (852)
T ss_pred EEecC-CcCHHHHHHHHHHHHHHHH-----------------HHHH---HCCCeecCCHHHHHHHHHhCCCCCCCc---h
Confidence 86655 8899999999887654421 1111 111137899999999999988 4544 5
Q ss_pred HHHHHH
Q 007444 370 AELYAA 375 (603)
Q Consensus 370 a~i~ll 375 (603)
...+++
T Consensus 813 ~L~~~i 818 (852)
T TIGR03346 813 PLKRAI 818 (852)
T ss_pred hHHHHH
Confidence 544444
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.2e-13 Score=149.72 Aligned_cols=229 Identities=24% Similarity=0.268 Sum_probs=143.1
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEWE 162 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~~~ 162 (603)
.+++|..|++|+||+++++.|.-+.......| +||+||+|||||++|+.+++.+ ||.-. .|..-|
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-----------~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-----------NCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCcc
Confidence 45789999999999999999966555444556 7889999999999999999876 34221 222334
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
+.|..-.. . ....++.+..... .| +|--+.+.+ ...+.| ..++..|++|||++.|....++
T Consensus 77 ~~C~~i~~---g-------~~~dv~eidaas~----~~-vd~ir~i~~-~v~~~p---~~~~~kViIIDE~~~Lt~~a~n 137 (559)
T PRK05563 77 EICKAITN---G-------SLMDVIEIDAASN----NG-VDEIRDIRD-KVKYAP---SEAKYKVYIIDEVHMLSTGAFN 137 (559)
T ss_pred HHHHHHhc---C-------CCCCeEEeecccc----CC-HHHHHHHHH-HHhhCc---ccCCeEEEEEECcccCCHHHHH
Confidence 44433110 0 1334555533210 11 110001100 001111 2345679999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.||..+++. |..+++|.+++ +...+.+.+++|+... .+. +++.++..+.+....
T Consensus 138 aLLKtLEep-------------p~~~ifIlatt-~~~ki~~tI~SRc~~~-~f~-~~~~~ei~~~L~~i~---------- 191 (559)
T PRK05563 138 ALLKTLEEP-------------PAHVIFILATT-EPHKIPATILSRCQRF-DFK-RISVEDIVERLKYIL---------- 191 (559)
T ss_pred HHHHHhcCC-------------CCCeEEEEEeC-ChhhCcHHHHhHheEE-ecC-CCCHHHHHHHHHHHH----------
Confidence 999999864 33456665555 4567888999998754 665 445554433332110
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
. ...+.++++++..|+..+ +. +.|..+.++..+... +...|+.+||..+
T Consensus 192 -----------------~--~egi~i~~~al~~ia~~s---~G-~~R~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 192 -----------------D--KEGIEYEDEALRLIARAA---EG-GMRDALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred -----------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 0 125789999988887764 22 678888888655432 3456888877654
No 125
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.8e-13 Score=150.11 Aligned_cols=235 Identities=20% Similarity=0.224 Sum_probs=148.3
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
...++||..|++++||+.+.+.|..+..+-. .+.-|+.||.|||||++||.+|+.+ ||--..-.++|.
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-----------NC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-----------NCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-----------cCCCCCCCCcch
Confidence 3456899999999999999999976655443 3459999999999999999999987 675422233444
Q ss_pred cccc--cccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 164 GLDE--KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 164 ~~~~--~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
.|.. .|.. . ....++++....- . |.-|+ +-+.+. ..+.| ..++--|++|||++.|+.+..
T Consensus 75 ~C~~Ck~I~~--g-------~~~DviEiDaASn--~--gVddi-R~i~e~-v~y~P---~~~ryKVyiIDEvHMLS~~af 136 (515)
T COG2812 75 KCISCKEINE--G-------SLIDVIEIDAASN--T--GVDDI-REIIEK-VNYAP---SEGRYKVYIIDEVHMLSKQAF 136 (515)
T ss_pred hhhhhHhhhc--C-------Ccccchhhhhhhc--c--ChHHH-HHHHHH-hccCC---ccccceEEEEecHHhhhHHHH
Confidence 4432 1110 0 0112222221110 0 11111 111111 11112 234456999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
|+||..+++- |.++.+|.+|. +...++..+++|+... .+. ..+.+. |..+...+.
T Consensus 137 NALLKTLEEP-------------P~hV~FIlATT-e~~Kip~TIlSRcq~f-~fk-ri~~~~---I~~~L~~i~------ 191 (515)
T COG2812 137 NALLKTLEEP-------------PSHVKFILATT-EPQKIPNTILSRCQRF-DFK-RLDLEE---IAKHLAAIL------ 191 (515)
T ss_pred HHHhcccccC-------------ccCeEEEEecC-CcCcCchhhhhccccc-ccc-CCCHHH---HHHHHHHHH------
Confidence 9999999874 55677777777 8889999999986554 444 223443 322211111
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
...++.++++++..|+..+ +. |+|..+.++..+... |...|+.++|...+.+
T Consensus 192 --------------------~~E~I~~e~~aL~~ia~~a---~G-s~RDalslLDq~i~~----~~~~It~~~v~~~lG~ 243 (515)
T COG2812 192 --------------------DKEGINIEEDALSLIARAA---EG-SLRDALSLLDQAIAF----GEGEITLESVRDMLGL 243 (515)
T ss_pred --------------------HhcCCccCHHHHHHHHHHc---CC-ChhhHHHHHHHHHHc----cCCcccHHHHHHHhCC
Confidence 1236789999988876653 33 789999998766543 2267888888766554
No 126
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-13 Score=152.63 Aligned_cols=212 Identities=25% Similarity=0.310 Sum_probs=144.8
Q ss_pred CcccccHHHHHHHHH----hh---hcc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLL----GA---IDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~l----aa---v~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||++++.++.- +. .+| .++..||.||+|+|||.||++||..|-.-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---------------------- 548 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---------------------- 548 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC----------------------
Confidence 468999999998832 22 233 34669999999999999999999998521
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccc-cccchhccc----CceEEeccccc
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVF-QPGLLAEAH----RGVLYIDEINL 235 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~-~~Gll~~A~----~gIL~IDEi~~ 235 (603)
...++.+..+ .+.++|+|+-. |-.-+ +-|.|.+|- -.||++|||++
T Consensus 549 -----------------e~aliR~DMSEy~EkHsVSrLIGaPP-------GYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 549 -----------------EQALIRIDMSEYMEKHSVSRLIGAPP-------GYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -----------------CccceeechHHHHHHHHHHHHhCCCC-------CCceeccccchhHhhhcCCCeEEEechhhh
Confidence 2233333322 34556777532 11111 236666662 25999999999
Q ss_pred CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---------------------------CCccHHHHhh
Q 007444 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---------------------------GVVREHLLDR 288 (603)
Q Consensus 236 l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---------------------------g~L~~~LldR 288 (603)
..++++|.||++|++|+.+- -.|..+.+. +.++|+|+|-.. ..|+|+|++|
T Consensus 605 AHpdV~nilLQVlDdGrLTD-~~Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR 682 (786)
T COG0542 605 AHPDVFNLLLQVLDDGRLTD-GQGRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR 682 (786)
T ss_pred cCHHHHHHHHHHhcCCeeec-CCCCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh
Confidence 99999999999999998542 234444443 689999999620 1378999999
Q ss_pred hcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCch
Q 007444 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (603)
Q Consensus 289 f~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~ 368 (603)
++-+|.+. |.+.+...+|+...+. .+..++. +.--.+.+++++..+|++.+..-. .|.
T Consensus 683 id~II~F~-~L~~~~l~~Iv~~~L~-----------------~l~~~L~---~~~i~l~~s~~a~~~l~~~gyd~~-~GA 740 (786)
T COG0542 683 IDEIIPFN-PLSKEVLERIVDLQLN-----------------RLAKRLA---ERGITLELSDEAKDFLAEKGYDPE-YGA 740 (786)
T ss_pred cccEEecc-CCCHHHHHHHHHHHHH-----------------HHHHHHH---hCCceEEECHHHHHHHHHhccCCC-cCc
Confidence 99876666 7788888888775432 1222222 223347899999999999987643 367
Q ss_pred hHHHHHHH
Q 007444 369 RAELYAAR 376 (603)
Q Consensus 369 Ra~i~llr 376 (603)
|-+.++++
T Consensus 741 RpL~R~Iq 748 (786)
T COG0542 741 RPLRRAIQ 748 (786)
T ss_pred hHHHHHHH
Confidence 76666553
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=3.8e-13 Score=156.46 Aligned_cols=209 Identities=24% Similarity=0.273 Sum_probs=133.8
Q ss_pred CcccccHHHHHHHHHhhh-------cc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||++++..+..+.. +| ..+.+||.||+|||||.+|++|+..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~----------------------- 510 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV----------------------- 510 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----------------------
Confidence 458999999998843221 22 1345899999999999999999998731
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccccccchhc----ccCceEEecccccC
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEINLL 236 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~----A~~gIL~IDEi~~l 236 (603)
+|+.+..+ .+..+++|+..- +-|. .+-|.+.+ ...+|||||||+.+
T Consensus 511 -------------------~~~~~d~se~~~~~~~~~lig~~~g----yvg~--~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 511 -------------------HLERFDMSEYMEKHTVSRLIGAPPG----YVGF--EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -------------------CeEEEeCchhhhcccHHHHhcCCCC----Cccc--chhhHHHHHHHhCCCeEEEEechhhc
Confidence 12211111 122334443100 0010 01122322 34579999999999
Q ss_pred CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC------------------------CCccHHHHhhhccc
Q 007444 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAIN 292 (603)
Q Consensus 237 ~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~L~~~LldRf~l~ 292 (603)
.+++++.|+++|++|.++- ..|..+.+. ++++|+|+|... ..|+|.|++||+..
T Consensus 566 ~~~~~~~Ll~~ld~g~~~d-~~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 566 HPDIYNILLQVMDYATLTD-NNGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred CHHHHHHHHHhhccCeeec-CCCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeE
Confidence 9999999999999998642 233333222 678999998621 12688999999988
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHH
Q 007444 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (603)
Q Consensus 293 v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i 372 (603)
|.+. |.+.++..+|+++.+.- +..++ ....-.+.++++++++|++.+...+. |.|..-
T Consensus 644 i~F~-pLs~e~l~~Iv~~~L~~-----------------l~~~l---~~~~~~l~i~~~a~~~La~~~~~~~~-GaR~l~ 701 (731)
T TIGR02639 644 IHFN-PLSEEVLEKIVQKFVDE-----------------LSKQL---NEKNIKLELTDDAKKYLAEKGYDEEF-GARPLA 701 (731)
T ss_pred EEcC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCCeEEeCHHHHHHHHHhCCCccc-CchHHH
Confidence 7776 88999888888754321 11111 11222478999999999997655443 566655
Q ss_pred HHH
Q 007444 373 YAA 375 (603)
Q Consensus 373 ~ll 375 (603)
.++
T Consensus 702 r~i 704 (731)
T TIGR02639 702 RVI 704 (731)
T ss_pred HHH
Confidence 554
No 128
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.49 E-value=5.2e-13 Score=133.16 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=127.5
Q ss_pred CCCCCcccc--cHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 91 FFPLAAVVG--QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 91 ~~~f~~IvG--q~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
+++|+++++ ++.++.++...+......+|+|+||+|||||++|++++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~-------------------------- 64 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE-------------------------- 64 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--------------------------
Confidence 577888773 5567777744333345678999999999999999999987531
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH--HHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLLN 246 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~--~~~LL~ 246 (603)
...+++.+++....+.....+ ..+ .+.++|||||++.++... +..|..
T Consensus 65 -------------~~~~~~~i~~~~~~~~~~~~~---------------~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~ 114 (226)
T TIGR03420 65 -------------RGKSAIYLPLAELAQADPEVL---------------EGL--EQADLVCLDDVEAIAGQPEWQEALFH 114 (226)
T ss_pred -------------cCCcEEEEeHHHHHHhHHHHH---------------hhc--ccCCEEEEeChhhhcCChHHHHHHHH
Confidence 022333333222111110000 001 123699999999998744 788888
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCC--cc-HHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VR-EHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~--L~-~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
+++.... .+..+|.|+|..... +. +.|.+||. ..|.+. |++.+++..++...
T Consensus 115 ~l~~~~~------------~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~-~l~~~e~~~~l~~~---------- 171 (226)
T TIGR03420 115 LYNRVRE------------AGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP-PLSDEEKIAALQSR---------- 171 (226)
T ss_pred HHHHHHH------------cCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecC-CCCHHHHHHHHHHH----------
Confidence 7764220 012355566644333 33 78999985 556666 44555555554311
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+. ...+.++++++++|++ .|++|+ |.+..+++.+...+...|+ .|+.+.+.+++
T Consensus 172 -----------------~~--~~~~~~~~~~l~~L~~-~~~gn~---r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 172 -----------------AA--RRGLQLPDEVADYLLR-HGSRDM---GSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred -----------------HH--HcCCCCCHHHHHHHHH-hccCCH---HHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 00 1146799999999999 488877 6777777776765555554 69999988765
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.6e-13 Score=148.79 Aligned_cols=230 Identities=20% Similarity=0.221 Sum_probs=141.8
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCcc
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEW 161 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~~ 161 (603)
..+++|..|++|+||+++++.|.-+.......| +||+||+|+|||++|+.+++.+ ||... .+..-
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-----------~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-----------NCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------cCCCCCCCCCCCc
Confidence 346789999999999999999966544434445 6999999999999999999986 45322 12233
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
|..|.+... . ....|+.+.... -.|.-|+. .+.+.. .+.| ..+...|++|||++.|+.+.+
T Consensus 76 c~~c~~i~~---g-------~~~d~~eid~~s----~~~v~~ir-~l~~~~-~~~p---~~~~~KVvIIdev~~Lt~~a~ 136 (576)
T PRK14965 76 CPPCVEITE---G-------RSVDVFEIDGAS----NTGVDDIR-ELRENV-KYLP---SRSRYKIFIIDEVHMLSTNAF 136 (576)
T ss_pred cHHHHHHhc---C-------CCCCeeeeeccC----ccCHHHHH-HHHHHH-Hhcc---ccCCceEEEEEChhhCCHHHH
Confidence 444543211 0 123344443211 01111111 111100 1112 234567999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
+.||..|++- |.++++|.+|| +...+.+.+++|+... .+. +.+.++....+..
T Consensus 137 naLLk~LEep-------------p~~~~fIl~t~-~~~kl~~tI~SRc~~~-~f~-~l~~~~i~~~L~~----------- 189 (576)
T PRK14965 137 NALLKTLEEP-------------PPHVKFIFATT-EPHKVPITILSRCQRF-DFR-RIPLQKIVDRLRY----------- 189 (576)
T ss_pred HHHHHHHHcC-------------CCCeEEEEEeC-ChhhhhHHHHHhhhhh-hcC-CCCHHHHHHHHHH-----------
Confidence 9999999974 23456666666 5577888999998644 666 3444432222211
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
|.. ...+.++++++.+|+..+ +. ++|..+.++.-+. .+.| +.|+.+||...
T Consensus 190 --------------i~~----~egi~i~~~al~~la~~a---~G-~lr~al~~Ldqli---ay~g-~~It~edV~~l 240 (576)
T PRK14965 190 --------------IAD----QEGISISDAALALVARKG---DG-SMRDSLSTLDQVL---AFCG-DAVGDDDVAEL 240 (576)
T ss_pred --------------HHH----HhCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hhcc-CCCCHHHHHHH
Confidence 110 125789999988887664 32 6788888875332 3344 35888887654
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.3e-12 Score=145.02 Aligned_cols=231 Identities=18% Similarity=0.216 Sum_probs=140.9
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
+..+++|..|++|+||+.++..|..+.-.....| +||+||+|+|||++|+++++.+- |... .|..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~-----------c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV-----------CEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc-----------CCCCCCCCCCc
Confidence 3457899999999999999998876554444555 48999999999999999998862 3221 1222
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.|..|..... ..+..++.+... ..+ |--++...+... ...| ..+...|++|||++.|+.+.
T Consensus 73 ~C~~C~~~~~----------~~h~dv~eldaa--s~~--gId~IRelie~~--~~~P---~~~~~KVvIIDEad~Lt~~A 133 (535)
T PRK08451 73 TCIQCQSALE----------NRHIDIIEMDAA--SNR--GIDDIRELIEQT--KYKP---SMARFKIFIIDEVHMLTKEA 133 (535)
T ss_pred ccHHHHHHhh----------cCCCeEEEeccc--ccc--CHHHHHHHHHHH--hhCc---ccCCeEEEEEECcccCCHHH
Confidence 3344433110 012334444321 111 211222211110 1112 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.||..|++-. ..+.+|.+++ +...+.+.+.+|.. .+.+. |.+.++..+.+..
T Consensus 134 ~NALLK~LEEpp-------------~~t~FIL~tt-d~~kL~~tI~SRc~-~~~F~-~Ls~~ei~~~L~~---------- 187 (535)
T PRK08451 134 FNALLKTLEEPP-------------SYVKFILATT-DPLKLPATILSRTQ-HFRFK-QIPQNSIISHLKT---------- 187 (535)
T ss_pred HHHHHHHHhhcC-------------CceEEEEEEC-ChhhCchHHHhhce-eEEcC-CCCHHHHHHHHHH----------
Confidence 999999999742 2445555555 55788899999964 54776 4444432222211
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
+.. ...+.++++++.+|+..+ +. ++|..+.++..+...+ ...||.++|.+.
T Consensus 188 ---------------Il~----~EGi~i~~~Al~~Ia~~s---~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 188 ---------------ILE----KEGVSYEPEALEILARSG---NG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred ---------------HHH----HcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 111 114788999988887764 32 6898888886554332 345777766544
No 131
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.48 E-value=1.7e-12 Score=130.05 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=127.5
Q ss_pred CCCCCCccccc--HHHHHHHHHh-hhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 90 QFFPLAAVVGQ--DAIKTALLLG-AIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 90 ~~~~f~~IvGq--~~~k~aL~la-av~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
++++|+++++. +.+...+.-. .-.....+++|+||+|||||+||++++..+..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~------------------------ 68 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY------------------------ 68 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh------------------------
Confidence 46889998733 4444444221 11234568999999999999999999987521
Q ss_pred ccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~ 246 (603)
.+.+++.+........ + -...+..+|||||++.++...+..|+.
T Consensus 69 ---------------~~~~~~~i~~~~~~~~-~--------------------~~~~~~~~liiDdi~~l~~~~~~~L~~ 112 (227)
T PRK08903 69 ---------------GGRNARYLDAASPLLA-F--------------------DFDPEAELYAVDDVERLDDAQQIALFN 112 (227)
T ss_pred ---------------CCCcEEEEehHHhHHH-H--------------------hhcccCCEEEEeChhhcCchHHHHHHH
Confidence 1223333332221110 0 011245799999999999999999988
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCC--CCCCccHHHHhhh--cccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp--~eg~L~~~LldRf--~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
+++.... .| ..++|.+++. ....+.++|++|| +..|.+. |++.+.+..++..
T Consensus 113 ~~~~~~~----~~-------~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~-pl~~~~~~~~l~~------------ 168 (227)
T PRK08903 113 LFNRVRA----HG-------QGALLVAGPAAPLALPLREDLRTRLGWGLVYELK-PLSDADKIAALKA------------ 168 (227)
T ss_pred HHHHHHH----cC-------CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec-CCCHHHHHHHHHH------------
Confidence 8865320 01 2223444432 2345678999999 4566776 4444433333221
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
+ + ....+.++++++++|.. .|++|+ |..+.+++.-...|...+ ..||...+++++.
T Consensus 169 -------------~--~--~~~~v~l~~~al~~L~~-~~~gn~---~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 169 -------------A--A--AERGLQLADEVPDYLLT-HFRRDM---PSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred -------------H--H--HHcCCCCCHHHHHHHHH-hccCCH---HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 0 0 11248899999999999 788877 666666666555665555 5799999988763
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.48 E-value=6.4e-13 Score=156.37 Aligned_cols=214 Identities=23% Similarity=0.288 Sum_probs=135.0
Q ss_pred CCcccccHHHHHHHHHh----h---hccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 94 LAAVVGQDAIKTALLLG----A---IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 94 f~~IvGq~~~k~aL~la----a---v~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
+..|+||+.++..+..+ . .+|. .+.+||.||+|||||++|++|+..+..-
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--------------------- 625 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--------------------- 625 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---------------------
Confidence 56799999988877322 1 1332 2569999999999999999999887320
Q ss_pred ccccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccccccchhcc----cCceEEeccccc
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINL 235 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~ 235 (603)
..+|+.+..+ ....+|+|...- +.|.. .-|.+..+ ..+|||||||+.
T Consensus 626 ------------------~~~~i~id~se~~~~~~~~~LiG~~pg----y~g~~--~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 626 ------------------DDAMVRIDMSEFMEKHSVSRLVGAPPG----YVGYE--EGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred ------------------CCcEEEEEhHHhhhhhhHHHHhCCCCc----ccccc--hhHHHHHHHHhCCCCeEEEeehhh
Confidence 2233332221 123345553210 00100 01222222 357999999999
Q ss_pred CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------------------------CCCccHHHHhhhcc
Q 007444 236 LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAI 291 (603)
Q Consensus 236 l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------------------eg~L~~~LldRf~l 291 (603)
+++.+++.|++++++|.++- ..|..+.+. +.++|+|+|.. .+.|+|+|+.|++.
T Consensus 682 a~~~v~~~Ll~ile~g~l~d-~~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ 759 (857)
T PRK10865 682 AHPDVFNILLQVLDDGRLTD-GQGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDE 759 (857)
T ss_pred CCHHHHHHHHHHHhhCceec-CCceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCe
Confidence 99999999999999998542 223333332 46789999962 13478999999988
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHH
Q 007444 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE 371 (603)
Q Consensus 292 ~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~ 371 (603)
++.+. |.+.+...+|++..+.. +..++ ....-.+.++++++++|+++++.... |.|..
T Consensus 760 iivF~-PL~~edl~~Iv~~~L~~-----------------l~~rl---~~~gi~l~is~~al~~L~~~gy~~~~-GARpL 817 (857)
T PRK10865 760 VVVFH-PLGEQHIASIAQIQLQR-----------------LYKRL---EERGYEIHISDEALKLLSENGYDPVY-GARPL 817 (857)
T ss_pred eEecC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCCcCcCCHHHHHHHHHcCCCccC-ChHHH
Confidence 76665 77888777776643321 11111 11122467999999999998776543 56765
Q ss_pred HHHHH
Q 007444 372 LYAAR 376 (603)
Q Consensus 372 i~llr 376 (603)
-++++
T Consensus 818 ~r~I~ 822 (857)
T PRK10865 818 KRAIQ 822 (857)
T ss_pred HHHHH
Confidence 55543
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=146.66 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=142.7
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~ 159 (603)
.+..+++|..|++|+||+.++..|.-+...... +.+||+||+|+|||++|+.++..+ +|... .+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L-----------~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI-----------NCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence 345578999999999999999988665443333 349999999999999999999987 34221 122
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
.-|..|..... . ....++.+.... ..|.-++..-. .. ....| ..++..|++|||++.|...
T Consensus 74 g~C~sCr~i~~---~-------~h~DiieIdaas----~igVd~IReIi-~~-~~~~P---~~~~~KVIIIDEad~Lt~~ 134 (605)
T PRK05896 74 NSCSVCESINT---N-------QSVDIVELDAAS----NNGVDEIRNII-DN-INYLP---TTFKYKVYIIDEAHMLSTS 134 (605)
T ss_pred cccHHHHHHHc---C-------CCCceEEecccc----ccCHHHHHHHH-HH-HHhch---hhCCcEEEEEechHhCCHH
Confidence 23444433110 0 123455543211 11111111111 00 01111 1235679999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.|+..|++.. ...++|.+++ ....+.+.+++|+.. +.+. +++.++....+...
T Consensus 135 A~NaLLKtLEEPp-------------~~tvfIL~Tt-~~~KLl~TI~SRcq~-ieF~-~Ls~~eL~~~L~~i-------- 190 (605)
T PRK05896 135 AWNALLKTLEEPP-------------KHVVFIFATT-EFQKIPLTIISRCQR-YNFK-KLNNSELQELLKSI-------- 190 (605)
T ss_pred HHHHHHHHHHhCC-------------CcEEEEEECC-ChHhhhHHHHhhhhh-cccC-CCCHHHHHHHHHHH--------
Confidence 9999999999743 2445666655 456778889999864 4776 44555444333211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
. . ...+.++++++..|+.++. .++|..+.++.. ++.+.|. .|+.++|.++
T Consensus 191 -----------------l--~--kegi~Is~eal~~La~lS~----GdlR~AlnlLek---L~~y~~~-~It~e~V~el 240 (605)
T PRK05896 191 -----------------A--K--KEKIKIEDNAIDKIADLAD----GSLRDGLSILDQ---LSTFKNS-EIDIEDINKT 240 (605)
T ss_pred -----------------H--H--HcCCCCCHHHHHHHHHHcC----CcHHHHHHHHHH---HHhhcCC-CCCHHHHHHH
Confidence 0 0 1246799999888877752 257888887754 3445554 3888777763
No 134
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.6e-14 Score=137.44 Aligned_cols=229 Identities=18% Similarity=0.237 Sum_probs=153.4
Q ss_pred ccCCCCCCCCcccccHHHHHHH----HHhhhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeecccccc
Q 007444 86 SYGRQFFPLAAVVGQDAIKTAL----LLGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIAN 152 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL----~laav~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n 152 (603)
....+.++.++|-|..+-+..| .+-.+.| ...|||+|||||||||++||++++..
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------------ 235 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------------ 235 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------------
Confidence 3345678899998876655544 2212222 14689999999999999999999753
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEE
Q 007444 153 ADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLY 229 (603)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ 229 (603)
+.-|+.+-.+.....++|. |++-. .-++..| +-+|+|
T Consensus 236 ------------------------------dacfirvigselvqkyvge---------garmv-relf~martkkaciif 275 (435)
T KOG0729|consen 236 ------------------------------DACFIRVIGSELVQKYVGE---------GARMV-RELFEMARTKKACIIF 275 (435)
T ss_pred ------------------------------CceEEeehhHHHHHHHhhh---------hHHHH-HHHHHHhcccceEEEE
Confidence 5567766656666667774 55433 3466555 347999
Q ss_pred ecccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 230 IDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 230 IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
+|||+.+ +.++|..+|.++..-. |.. -..++-++.+|| .+..|+|+|++ |++..|++.
T Consensus 276 fdeidaiggarfddg~ggdnevqrtmleli~qld------gfd--prgnikvlmatn-rpdtldpallrpgrldrkvef~ 346 (435)
T KOG0729|consen 276 FDEIDAIGGARFDDGAGGDNEVQRTMLELINQLD------GFD--PRGNIKVLMATN-RPDTLDPALLRPGRLDRKVEFG 346 (435)
T ss_pred eeccccccCccccCCCCCcHHHHHHHHHHHHhcc------CCC--CCCCeEEEeecC-CCCCcCHhhcCCcccccceecc
Confidence 9999876 4578999998886532 211 123677889999 78889999998 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHH
Q 007444 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAA 375 (603)
Q Consensus 297 ~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~ll 375 (603)
+| +.+.|..|++... +...+..++ .++|+.+|-..-.. ....+.
T Consensus 347 lp-dlegrt~i~kiha-------------------------------ksmsverdir~ellarlcpnstga---eirsvc 391 (435)
T KOG0729|consen 347 LP-DLEGRTHIFKIHA-------------------------------KSMSVERDIRFELLARLCPNSTGA---EIRSVC 391 (435)
T ss_pred CC-cccccceeEEEec-------------------------------cccccccchhHHHHHhhCCCCcch---HHHHHH
Confidence 76 8888887765321 122333333 24555555433222 222344
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccCC
Q 007444 376 RVAKCLAALEGREKVNVDDLKKAVELVILPRSIIN 410 (603)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~ 410 (603)
--|.-.|...-|..+|+.|+-+|+.-|...-+.|.
T Consensus 392 teagmfairarrk~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 392 TEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 45566666667788899999999998887766554
No 135
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.47 E-value=1.7e-13 Score=143.35 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
..+++|+||||||||++|++++..+ +.+|+.+..+...
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el------------------------------------------g~~~i~vsa~eL~ 185 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM------------------------------------------GIEPIVMSAGELE 185 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc------------------------------------------CCCeEEEEHHHhh
Confidence 4569999999999999999999987 5678999998899
Q ss_pred ccccccccchhccccCcccccccchhcc--------cCceEEecccccCCH-----------HHH-HHHHHHHHcCceeE
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA--------HRGVLYIDEINLLDE-----------GIS-NLLLNVLTEGVNIV 255 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A--------~~gIL~IDEi~~l~~-----------~~~-~~LL~~l~~g~~~v 255 (603)
+.++|.- ++.++ .++..| ...|||||||+.+-. .++ ..|+..|+.- ..+
T Consensus 186 sk~vGEs--Ek~IR--------~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p-~~v 254 (413)
T PLN00020 186 SENAGEP--GKLIR--------QRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNP-TNV 254 (413)
T ss_pred cCcCCcH--HHHHH--------HHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCC-ccc
Confidence 9999962 22222 233322 367999999997622 233 5677777642 123
Q ss_pred eeCCe--eeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHHHHHHHHHH
Q 007444 256 EREGI--SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 256 ~r~G~--s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
+-+|. ......++.||+|+| ....|+++|++ ||+..+. .|+.++|.+|++.
T Consensus 255 ~l~G~w~~~~~~~~V~VIaTTN-rpd~LDpALlRpGRfDk~i~---lPd~e~R~eIL~~ 309 (413)
T PLN00020 255 SLGGDWREKEEIPRVPIIVTGN-DFSTLYAPLIRDGRMEKFYW---APTREDRIGVVHG 309 (413)
T ss_pred cccccccccccCCCceEEEeCC-CcccCCHhHcCCCCCCceeC---CCCHHHHHHHHHH
Confidence 33332 112334688999999 99999999999 9999754 3589999999874
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=5.9e-13 Score=142.10 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=101.9
Q ss_pred ccCceEEecccccCC------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCCccHHHHh
Q 007444 223 AHRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLD 287 (603)
Q Consensus 223 A~~gIL~IDEi~~l~------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~L~~~Lld 287 (603)
++.||+|||||+.+. ..+|..||..++...+.+ +.|. +. -.++++|++--- .+..|-|.|.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~-v~-T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGM-VK-TDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-ccee-EE-CCceeEEecCCcCCCChhhccHHHhC
Confidence 478999999999873 358999999998766554 2222 11 124555554331 34568899999
Q ss_pred hhcccccccCCCCHHHHHHHHHHHHHHHhhhH-HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc----
Q 007444 288 RIAINLSADLPMTFEDRVAAVGIATQFQERSN-EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR---- 362 (603)
Q Consensus 288 Rf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~-~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~---- 362 (603)
||.++|.+. +.+.+....|+. .|. +...+| ...-....-.+.+++++++.|+..+..
T Consensus 323 R~Pi~v~L~-~L~~edL~rILt-------eP~nsLikQy----------~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~ 384 (441)
T TIGR00390 323 RFPIRVELQ-ALTTDDFERILT-------EPKNSLIKQY----------KALMKTEGVNIEFSDEAIKRIAELAYNVNEK 384 (441)
T ss_pred ccceEEECC-CCCHHHHHHHhc-------CChhHHHHHH----------HHHHhhcCcEEEEeHHHHHHHHHHHHHhccc
Confidence 999999998 778888877763 111 111111 111122223467999999999999987
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHcCCC------CCcHHHHHHHHH
Q 007444 363 -GGCQGHRAELYAARVAKCLAALEGRE------KVNVDDLKKAVE 400 (603)
Q Consensus 363 -~~v~s~Ra~i~llr~Ara~Aal~gr~------~Vt~eDv~~A~~ 400 (603)
.|+ |.|.+..++...-.-+.++--. .|+.+-|...+.
T Consensus 385 ~~~i-GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 385 TENI-GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred cccc-chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 344 8898888887666555555322 356666655444
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.46 E-value=5.3e-13 Score=142.54 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=101.0
Q ss_pred cCceEEecccccCC------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCCccHHHHhh
Q 007444 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDR 288 (603)
Q Consensus 224 ~~gIL~IDEi~~l~------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~L~~~LldR 288 (603)
+.||+|||||+.+. ..+|..||..++.-.+.+. .|. +. -.++++|++--- .+..|-|.|.-|
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k-~~~-i~-T~~ILFI~~GAF~~~kp~DlIPEl~GR 325 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK-YGM-VK-TDHILFIASGAFHVSKPSDLIPELQGR 325 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec-cee-EE-CCceeEEecCCcCCCChhhccHHHhCc
Confidence 78999999999883 3589999999987665542 221 11 124555554331 234678999999
Q ss_pred hcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcC-----
Q 007444 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----- 363 (603)
Q Consensus 289 f~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~----- 363 (603)
|.+++.+. +.+.+....|+.- |.. ..++.+...-....-.+.+++++++.|++.+...
T Consensus 326 ~Pi~v~L~-~L~~~dL~~ILte-------P~n---------sLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~ 388 (443)
T PRK05201 326 FPIRVELD-ALTEEDFVRILTE-------PKA---------SLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTE 388 (443)
T ss_pred cceEEECC-CCCHHHHHHHhcC-------Chh---------HHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhccccc
Confidence 99999998 7788888777631 110 1111122222222334679999999999999874
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCC------CCcHHHHHHHHH
Q 007444 364 GCQGHRAELYAARVAKCLAALEGRE------KVNVDDLKKAVE 400 (603)
Q Consensus 364 ~v~s~Ra~i~llr~Ara~Aal~gr~------~Vt~eDv~~A~~ 400 (603)
|+ |.|.+..++...-.-+.++--+ .|+.+-|...+.
T Consensus 389 ~i-GAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 389 NI-GARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred cc-chhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 44 8899888887666555544322 355555655443
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.8e-12 Score=140.58 Aligned_cols=236 Identities=15% Similarity=0.151 Sum_probs=143.2
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC--------
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-------- 155 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~-------- 155 (603)
...+.+|..|++|+||+.++..|.-+..+....| +||+||+|+|||++|+++++.+. |..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-----------c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-----------CQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-----------CCCCcCccccc
Confidence 3456889999999999999998866555444455 99999999999999999999873 421
Q ss_pred ---CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecc
Q 007444 156 ---TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDE 232 (603)
Q Consensus 156 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDE 232 (603)
..|..-|..|...... .+..|+.+..... .|.-++.. +.+ .....| ..+...|++|||
T Consensus 75 ~~~~~~c~~c~~c~~~~~~----------~~~n~~~~~~~~~----~~id~Ir~-l~~-~~~~~p---~~~~~kvvIIde 135 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAG----------TSLNISEFDAASN----NSVDDIRL-LRE-NVRYGP---QKGRYRVYIIDE 135 (397)
T ss_pred ccCCCCCCCCHHHHHHhcC----------CCCCeEeeccccc----CCHHHHHH-HHH-HHhhch---hcCCeEEEEEeC
Confidence 1122233444332110 1334444432111 11111111 100 001111 223556999999
Q ss_pred cccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHH
Q 007444 233 INLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (603)
Q Consensus 233 i~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~ 312 (603)
++.++.+.++.|+..+++.. ...++|.+++ +...+.+.|..|+... .+. |.+.++..+.+..
T Consensus 136 a~~l~~~~~~~LLk~LEep~-------------~~t~~Il~t~-~~~kl~~tl~sR~~~v-~f~-~l~~~ei~~~l~~-- 197 (397)
T PRK14955 136 VHMLSIAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLEEIQQQLQG-- 197 (397)
T ss_pred hhhCCHHHHHHHHHHHhcCC-------------CCeEEEEEeC-ChHHhHHHHHHHHHHh-hcC-CCCHHHHHHHHHH--
Confidence 99999999999999998642 2345555554 4456777888888643 665 4444432222211
Q ss_pred HHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH-cCCCCCc
Q 007444 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVN 391 (603)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal-~gr~~Vt 391 (603)
+. + ...+.++++++++|+..+ +. +.|..+..+..+..++.. .+...|+
T Consensus 198 -----------------------~~--~--~~g~~i~~~al~~l~~~s---~g-~lr~a~~~L~kl~~~~~~~~~~~~It 246 (397)
T PRK14955 198 -----------------------IC--E--AEGISVDADALQLIGRKA---QG-SMRDAQSILDQVIAFSVESEGEGSIR 246 (397)
T ss_pred -----------------------HH--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhccccCCCCccC
Confidence 00 1 125789999999998875 22 578888877655544422 2345899
Q ss_pred HHHHHHHH
Q 007444 392 VDDLKKAV 399 (603)
Q Consensus 392 ~eDv~~A~ 399 (603)
.++|.+++
T Consensus 247 ~~~v~~~v 254 (397)
T PRK14955 247 YDKVAELL 254 (397)
T ss_pred HHHHHHHH
Confidence 99887664
No 139
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2e-12 Score=143.53 Aligned_cols=231 Identities=20% Similarity=0.219 Sum_probs=143.6
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCcE-EEECCCCChHHHHHHHHHHhCCCCeeeccccccCC-CC-CCCcccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PT-CPDEWED 163 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gV-LL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~-~~-~~~~~~~ 163 (603)
.+++|..|++|+||++++..|..........|. ||+|||||||||+|+++++.+. |. +. .+...|.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-----------c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-----------CSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-----------ccCCCCCCCCcCh
Confidence 468999999999999999988665544445565 9999999999999999999863 31 11 1222333
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.|..... + ....++.+.... . .| +|.-+.+.+-. ...| ..++..|++|||++.++...++.
T Consensus 75 sc~~i~~----~------~h~dv~el~~~~--~--~~-vd~iR~l~~~~-~~~p---~~~~~kVVIIDEad~ls~~a~na 135 (504)
T PRK14963 75 SCLAVRR----G------AHPDVLEIDAAS--N--NS-VEDVRDLREKV-LLAP---LRGGRKVYILDEAHMMSKSAFNA 135 (504)
T ss_pred hhHHHhc----C------CCCceEEecccc--c--CC-HHHHHHHHHHH-hhcc---ccCCCeEEEEECccccCHHHHHH
Confidence 4432110 0 133455554321 1 11 11111111100 0111 12345699999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+..|++.. ..+++|.++| ....+.+.+.+|+.. +.+. |++.++..+.+.....
T Consensus 136 LLk~LEep~-------------~~t~~Il~t~-~~~kl~~~I~SRc~~-~~f~-~ls~~el~~~L~~i~~---------- 189 (504)
T PRK14963 136 LLKTLEEPP-------------EHVIFILATT-EPEKMPPTILSRTQH-FRFR-RLTEEEIAGKLRRLLE---------- 189 (504)
T ss_pred HHHHHHhCC-------------CCEEEEEEcC-ChhhCChHHhcceEE-EEec-CCCHHHHHHHHHHHHH----------
Confidence 999998742 2345666666 456778889999764 4776 4555544433332110
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
...+.++++++.+|+..+ +. .+|..++.+..+.. . + ..||.++|.+++..
T Consensus 190 -------------------~egi~i~~~Al~~ia~~s---~G-dlR~aln~Lekl~~---~-~-~~It~~~V~~~l~~ 239 (504)
T PRK14963 190 -------------------AEGREAEPEALQLVARLA---DG-AMRDAESLLERLLA---L-G-TPVTRKQVEEALGL 239 (504)
T ss_pred -------------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHh---c-C-CCCCHHHHHHHHCC
Confidence 114778999999988775 22 57888888765432 2 2 36999998876543
No 140
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.7e-13 Score=137.52 Aligned_cols=135 Identities=31% Similarity=0.451 Sum_probs=97.6
Q ss_pred ccccHHHHHHHHHhhhc---------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 97 VVGQDAIKTALLLGAID---------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 97 IvGq~~~k~aL~laav~---------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
||||+.+|+.|-.|..| -+..+|||.||+|+|||.||+.||+.|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L--------------------- 121 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL--------------------- 121 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---------------------
Confidence 89999999988443221 134669999999999999999999998
Q ss_pred cccccccccccccccccccccCCCeEEc-CCCCccccccccccchhccccCcccccccchhcccCceEEecccccCC---
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQI-PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--- 237 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l-~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~--- 237 (603)
+.||-.- ...+|+..++|. |+|.-+..= -..-..-..+|.+||+|||||+.+.
T Consensus 122 ---------------------nVPFaiADATtLTEAGYVGE-DVENillkL-lqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 122 ---------------------NVPFAIADATTLTEAGYVGE-DVENILLKL-LQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred ---------------------CCCeeeccccchhhccccch-hHHHHHHHH-HHHcccCHHHHhCCeEEEechhhhhccC
Confidence 6777654 345788899996 544432110 0011234567889999999999873
Q ss_pred -----------HHHHHHHHHHHHcCceeEeeCCeeeEecC-CcEEEEEeCC
Q 007444 238 -----------EGISNLLLNVLTEGVNIVEREGISFKHPC-KPLLIATYNP 276 (603)
Q Consensus 238 -----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~-~~~lIattNp 276 (603)
..+|.+||..++.-...|..-|+. .||. .|+-|-|+|-
T Consensus 179 eN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR-KHP~Qe~iqvDT~NI 228 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR-KHPQQEFIQVDTSNI 228 (408)
T ss_pred CCCCcccccCchHHHHHHHHHHcCceeccCCCCCC-CCCccceEEEcccce
Confidence 478999999999777677666654 4554 5777777775
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=7.5e-13 Score=152.90 Aligned_cols=210 Identities=17% Similarity=0.223 Sum_probs=120.6
Q ss_pred CCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
.=.++.++|.+...+.+.-........++||+||||||||++|++++..+-... +.
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~-vP----------------------- 237 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD-VP----------------------- 237 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC-CC-----------------------
Confidence 344778999998888775434434567899999999999999999997642100 00
Q ss_pred ccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcccCceEEecccccC---------CHH
Q 007444 171 YDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------DEG 239 (603)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l---------~~~ 239 (603)
....+..++.+..+... ..+.|.+ +..+ ...-..+....++|||||||+.+ ..+
T Consensus 238 --------~~l~~~~~~~l~~~~llaG~~~~Ge~--e~rl-----~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d 302 (758)
T PRK11034 238 --------EVMADCTIYSLDIGSLLAGTKYRGDF--EKRF-----KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD 302 (758)
T ss_pred --------chhcCCeEEeccHHHHhcccchhhhH--HHHH-----HHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH
Confidence 00012333333221110 1112211 0000 00001223345689999999987 134
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHHHHH-H
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ-F 314 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~-f 314 (603)
+.+.|..+++.|. +.+||+||+++. +.+++|.+||. .|.|+ +++.+++.+|++.... |
T Consensus 303 ~~nlLkp~L~~g~---------------i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~-ePs~~~~~~IL~~~~~~y 365 (758)
T PRK11034 303 AANLIKPLLSSGK---------------IRVIGSTTYQEFSNIFEKDRALARRFQ-KIDIT-EPSIEETVQIINGLKPKY 365 (758)
T ss_pred HHHHHHHHHhCCC---------------eEEEecCChHHHHHHhhccHHHHhhCc-EEEeC-CCCHHHHHHHHHHHHHHh
Confidence 5566777777664 579999998763 57899999997 56888 5689999999875322 2
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL 361 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~ 361 (603)
+... ...-....+..-+..+..+++.-.+++.+++.|-+.|.
T Consensus 366 e~~h-----~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 366 EAHH-----DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred hhcc-----CCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 1111 01111223333334444445555556666555555543
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=1.1e-12 Score=153.89 Aligned_cols=213 Identities=17% Similarity=0.203 Sum_probs=136.2
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++-.++.|+|+++.++.++.........+++|+||||||||++|+.|+..+..-.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~------------------------ 236 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGD------------------------ 236 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCC------------------------
Confidence 46778999999999888776544455677899999999999999999999874210
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcc----cCceEEecccccCCH----
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE---- 238 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l~~---- 238 (603)
.+....+..++.+..+... ..+.|.+ +..+ ..++..+ .+.|||||||+.+..
T Consensus 237 --------v~~~l~~~~i~~l~l~~l~ag~~~~ge~--e~~l--------k~ii~e~~~~~~~~ILfIDEih~l~~~g~~ 298 (852)
T TIGR03345 237 --------VPPALRNVRLLSLDLGLLQAGASVKGEF--ENRL--------KSVIDEVKASPQPIILFIDEAHTLIGAGGQ 298 (852)
T ss_pred --------CCccccCCeEEEeehhhhhcccccchHH--HHHH--------HHHHHHHHhcCCCeEEEEeChHHhccCCCc
Confidence 0001123445555544322 1223321 1111 1122222 346999999999842
Q ss_pred ----HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 239 ----~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
+..+.|+..++.|. +.+||||++++. +++++|.+||.. |.|. +++.++..+|++.
T Consensus 299 ~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e~~~~~~~d~AL~rRf~~-i~v~-eps~~~~~~iL~~ 361 (852)
T TIGR03345 299 AGQGDAANLLKPALARGE---------------LRTIAATTWAEYKKYFEKDPALTRRFQV-VKVE-EPDEETAIRMLRG 361 (852)
T ss_pred cccccHHHHhhHHhhCCC---------------eEEEEecCHHHHhhhhhccHHHHHhCeE-EEeC-CCCHHHHHHHHHH
Confidence 23456888888775 579999998654 478999999974 5888 5689999989764
Q ss_pred HHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC
Q 007444 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG 364 (603)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~ 364 (603)
.....+ .+. .+.-..+.+..-+..+..+.+...+++.+++.|-+.||...
T Consensus 362 ~~~~~e---~~~-~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 362 LAPVLE---KHH-GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred HHHhhh---hcC-CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 332211 000 12223345555556666677777778877777777776543
No 143
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.45 E-value=1.1e-12 Score=153.41 Aligned_cols=203 Identities=22% Similarity=0.306 Sum_probs=121.1
Q ss_pred cccccHHHHHHHHHh-hh---c--cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 96 AVVGQDAIKTALLLG-AI---D--REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 96 ~IvGq~~~k~aL~la-av---~--p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
+++|++.+|..+.-. ++ . +...++||+||||||||++|++|+..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~---------------------------- 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN---------------------------- 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----------------------------
Confidence 489999999988421 11 1 1233599999999999999999999873
Q ss_pred cccccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccccccc----hhc--ccCceEEecccccCCHH--
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGL----LAE--AHRGVLYIDEINLLDEG-- 239 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~~~Gl----l~~--A~~gIL~IDEi~~l~~~-- 239 (603)
.+|+.+..+. ....+.|+.. .+.|. .+|. +.. ..+.|+|||||+.+...
T Consensus 373 --------------~~~~~i~~~~~~~~~~i~g~~~----~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~ 431 (775)
T TIGR00763 373 --------------RKFVRFSLGGVRDEAEIRGHRR----TYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR 431 (775)
T ss_pred --------------CCeEEEeCCCcccHHHHcCCCC----ceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccC
Confidence 3344333221 1122222110 00010 0121 222 24569999999999653
Q ss_pred --HHHHHHHHHHcCceeEeeC---CeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 240 --ISNLLLNVLTEGVNIVERE---GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 240 --~~~~LL~~l~~g~~~v~r~---G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
..+.|+.+|+...+....+ +..+.. .++++|+|+| ....++++|++||.+ |.+. +++.+++.+|+...+.
T Consensus 432 ~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN-~~~~i~~~L~~R~~v-i~~~-~~~~~e~~~I~~~~l~- 506 (775)
T TIGR00763 432 GDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATAN-SIDTIPRPLLDRMEV-IELS-GYTEEEKLEIAKKYLI- 506 (775)
T ss_pred CCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecC-CchhCCHHHhCCeeE-EecC-CCCHHHHHHHHHHHHH-
Confidence 4588999998532211111 111111 3678999999 466789999999975 4777 5688889888764321
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHH-HHcCCCCchhHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVME-ALRGGCQGHRAE 371 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~-a~~~~v~s~Ra~ 371 (603)
.+....+.. ...+.++++++.+|++. +...|+.+++..
T Consensus 507 -------------------~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~ 546 (775)
T TIGR00763 507 -------------------PKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQ 546 (775)
T ss_pred -------------------HHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHH
Confidence 011111111 12468999999998874 444555444433
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3e-12 Score=141.70 Aligned_cols=236 Identities=19% Similarity=0.189 Sum_probs=141.8
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
++..+++|..|.+|+||+.++..|.-+.-+....| +||+||+|+|||++|+.++..+. |........|
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~-----------c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN-----------CLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCC
Confidence 44556889999999999999998866554434455 68999999999999999999873 3111111123
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
..|..-...+.. ....++.+..... .| +|--+.+.... ...| ..+...|++|||++.|+...++
T Consensus 74 ~~c~nc~~i~~g-------~~~d~~eidaas~----~g-vd~ir~I~~~~-~~~P---~~~~~KVvIIDEad~Lt~~a~n 137 (486)
T PRK14953 74 GKCENCVEIDKG-------SFPDLIEIDAASN----RG-IDDIRALRDAV-SYTP---IKGKYKVYIIDEAHMLTKEAFN 137 (486)
T ss_pred CccHHHHHHhcC-------CCCcEEEEeCccC----CC-HHHHHHHHHHH-HhCc---ccCCeeEEEEEChhhcCHHHHH
Confidence 222110000000 1223444422110 11 11001111000 0111 1235579999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|+..+++.. ..+++|.++| +...+.+.+.+|+.. +.+. |++.++..+.+....
T Consensus 138 aLLk~LEepp-------------~~~v~Il~tt-~~~kl~~tI~SRc~~-i~f~-~ls~~el~~~L~~i~---------- 191 (486)
T PRK14953 138 ALLKTLEEPP-------------PRTIFILCTT-EYDKIPPTILSRCQR-FIFS-KPTKEQIKEYLKRIC---------- 191 (486)
T ss_pred HHHHHHhcCC-------------CCeEEEEEEC-CHHHHHHHHHHhceE-EEcC-CCCHHHHHHHHHHHH----------
Confidence 9999998642 2345555554 345577788999864 4666 555665444433211
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+ ...+.++++++.+|++.+. .++|..+.++..+... +...||.++|.+++
T Consensus 192 -----------------k--~egi~id~~al~~La~~s~----G~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 192 -----------------N--EEKIEYEEKALDLLAQASE----GGMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred -----------------H--HcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 1 1146799999998887642 2579888888665432 34568998888754
No 145
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.43 E-value=4.2e-12 Score=127.41 Aligned_cols=134 Identities=25% Similarity=0.364 Sum_probs=106.8
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------------CCCccHHHHhhhccc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------EGVVREHLLDRIAIN 292 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------------eg~L~~~LldRf~l~ 292 (603)
.|+|||||++.|+-+....|..++++.. ..++|.++|.. +.-++++|+||+-++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 6899999999999999999999998764 34678888852 234678999999766
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHH
Q 007444 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (603)
Q Consensus 293 v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i 372 (603)
=.. +++.++..+|+.++. ....+.++++++..|.++... .++|..+
T Consensus 363 rt~--~y~~~e~r~Ii~~Ra-----------------------------~~E~l~~~e~a~~~l~~~gt~---tsLRy~v 408 (456)
T KOG1942|consen 363 RTL--PYDEEEIRQIIKIRA-----------------------------QVEGLQVEEEALDLLAEIGTS---TSLRYAV 408 (456)
T ss_pred eec--cCCHHHHHHHHHHHH-----------------------------hhhcceecHHHHHHHHhhccc---hhHHHHH
Confidence 333 667777777766542 233578999999999877443 4789999
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
.++--|..+|..+|++.|..+||+++..|-+--+
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 9999899999999999999999999998876544
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.1e-12 Score=144.23 Aligned_cols=232 Identities=19% Similarity=0.186 Sum_probs=137.9
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
.+++|..|++|+||+.++..|..+.......| +||+||+|+|||++|+.+++.+. |..+-....+...|+.|
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-------c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-------CTTNDPKGRPCGTCEMC 80 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-------CCCCCCCCCCCccCHHH
Confidence 46789999999999999999866555444455 69999999999999999999873 11110011233345555
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
...... ....++.+... ...+.-++. .+. ......| ..+...|+||||++.|+.+.++.||
T Consensus 81 ~~i~~~----------~~~d~~~i~~~----~~~~vd~ir-~ii-~~~~~~p---~~~~~kVvIIDEa~~L~~~a~naLL 141 (585)
T PRK14950 81 RAIAEG----------SAVDVIEMDAA----SHTSVDDAR-EII-ERVQFRP---ALARYKVYIIDEVHMLSTAAFNALL 141 (585)
T ss_pred HHHhcC----------CCCeEEEEecc----ccCCHHHHH-HHH-HHHhhCc---ccCCeEEEEEeChHhCCHHHHHHHH
Confidence 442210 12234444321 111111111 110 0001111 1245679999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhh
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~ 325 (603)
..|++.. ..++||.+++ +...+.+.+.+|+.. +.+. +.+..+..+++...
T Consensus 142 k~LEepp-------------~~tv~Il~t~-~~~kll~tI~SR~~~-i~f~-~l~~~el~~~L~~~-------------- 191 (585)
T PRK14950 142 KTLEEPP-------------PHAIFILATT-EVHKVPATILSRCQR-FDFH-RHSVADMAAHLRKI-------------- 191 (585)
T ss_pred HHHhcCC-------------CCeEEEEEeC-ChhhhhHHHHhccce-eeCC-CCCHHHHHHHHHHH--------------
Confidence 9998743 2345555554 344466778888754 3665 34444333332211
Q ss_pred hHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 326 ~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
+. ...+.++++++.+|+.++ +. +.|..+..+.. ++.+ +...|+.++|.+
T Consensus 192 -------------a~--~egl~i~~eal~~La~~s---~G-dlr~al~~Lek---L~~y-~~~~It~e~V~~ 240 (585)
T PRK14950 192 -------------AA--AEGINLEPGALEAIARAA---TG-SMRDAENLLQQ---LATT-YGGEISLSQVQS 240 (585)
T ss_pred -------------HH--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---HHHh-cCCCCCHHHHHH
Confidence 01 124679999988887765 22 67888877753 3333 345688888765
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.6e-12 Score=143.25 Aligned_cols=232 Identities=18% Similarity=0.202 Sum_probs=142.5
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
...+++|..|++|+||+.++..|.-+..+....| +||+||+|+|||++|+++++.+. |... .|..
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-----------c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-----------CVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-----------cccCCCCCCCc
Confidence 3456789999999999999999876555444455 89999999999999999999873 4321 1223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
-|..|...-. . ....++.+.... -.|.-|+.. +.+. ....| ..++..|++|||++.|+.+.
T Consensus 75 ~C~~C~~i~~---~-------~~~dv~~idgas----~~~vddIr~-l~e~-~~~~p---~~~~~KVvIIDEa~~Ls~~a 135 (563)
T PRK06647 75 ECSSCKSIDN---D-------NSLDVIEIDGAS----NTSVQDVRQ-IKEE-IMFPP---ASSRYRVYIIDEVHMLSNSA 135 (563)
T ss_pred cchHHHHHHc---C-------CCCCeEEecCcc----cCCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhcCHHH
Confidence 3444433110 0 122344432211 001001110 0000 00111 13456699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.||..+++. |..+++|.+++ +...+.+.|..|+... .+. +...++..+.+..
T Consensus 136 ~naLLK~LEep-------------p~~~vfI~~tt-e~~kL~~tI~SRc~~~-~f~-~l~~~el~~~L~~---------- 189 (563)
T PRK06647 136 FNALLKTIEEP-------------PPYIVFIFATT-EVHKLPATIKSRCQHF-NFR-LLSLEKIYNMLKK---------- 189 (563)
T ss_pred HHHHHHhhccC-------------CCCEEEEEecC-ChHHhHHHHHHhceEE-Eec-CCCHHHHHHHHHH----------
Confidence 99999999863 23456666665 4567888999998754 665 4444443333221
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+. + ...+.++++++.+|+..+ +. +.|..+.++..+. .+.+ ..|+.++|..++
T Consensus 190 ---------------i~--~--~egi~id~eAl~lLa~~s---~G-dlR~alslLdkli---s~~~-~~It~e~V~~ll 241 (563)
T PRK06647 190 ---------------VC--L--EDQIKYEDEALKWIAYKS---TG-SVRDAYTLFDQVV---SFSD-SDITLEQIRSKM 241 (563)
T ss_pred ---------------HH--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---hhcC-CCCCHHHHHHHh
Confidence 11 1 125789999999887764 22 5788888875443 2334 468888887754
No 148
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=6.4e-12 Score=134.52 Aligned_cols=246 Identities=18% Similarity=0.166 Sum_probs=142.1
Q ss_pred CCCCcccccHHHHHHHHHhh---h-ccCCCcEEEECCCCChHHHHHHHHHHhCCCCe-----eeccccccCCCCCC-Ccc
Q 007444 92 FPLAAVVGQDAIKTALLLGA---I-DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCP-DEW 161 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laa---v-~p~~~gVLL~GppGTGKT~lArala~~l~~~~-----~~~~~~~n~~~~~~-~~~ 161 (603)
|-...++|++..+..|.... + ....+.++|+||||||||++++.+...+.... .+..+++||..... ..+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 44567999998887774322 2 22346799999999999999999987663210 02234455532110 001
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh-cccCceEEecccccCC---
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLD--- 237 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~-~A~~gIL~IDEi~~l~--- 237 (603)
...+...+.. .+ ...+ ..+.+..+++.. .. ..+. .....||+|||++.+.
T Consensus 92 ~~~i~~~l~~--~~------~~~~----~~~~~~~~~~~~-------------l~-~~l~~~~~~~vlvIDE~d~L~~~~ 145 (365)
T TIGR02928 92 LVELANQLRG--SG------EEVP----TTGLSTSEVFRR-------------LY-KELNERGDSLIIVLDEIDYLVGDD 145 (365)
T ss_pred HHHHHHHHhh--cC------CCCC----CCCCCHHHHHHH-------------HH-HHHHhcCCeEEEEECchhhhccCC
Confidence 0000000000 00 0000 000000011000 00 0111 1223589999999993
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhc-ccccccCCCCHHHHHHHHHHHHHH
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA-INLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~-l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.+++..|+...+.... ...++.+|+.+|... ..+.+.+.+||. ..|.+. |++.++..+|+..+...
T Consensus 146 ~~~L~~l~~~~~~~~~----------~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~-p~~~~e~~~il~~r~~~ 214 (365)
T TIGR02928 146 DDLLYQLSRARSNGDL----------DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP-PYDAEELRDILENRAEK 214 (365)
T ss_pred cHHHHhHhccccccCC----------CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC-CCCHHHHHHHHHHHHHh
Confidence 3334444433221110 012567888888432 357788888986 345555 78888888887653210
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eD 394 (603)
.+....++++++++++..+...+. ..|..+.+++.|..+|...+...|+.+|
T Consensus 215 ---------------------------~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~ 266 (365)
T TIGR02928 215 ---------------------------AFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDH 266 (365)
T ss_pred ---------------------------hccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 112335888998888887765433 4799999999999899889999999999
Q ss_pred HHHHHHHH
Q 007444 395 LKKAVELV 402 (603)
Q Consensus 395 v~~A~~lv 402 (603)
|..|+..+
T Consensus 267 v~~a~~~~ 274 (365)
T TIGR02928 267 VEKAQEKI 274 (365)
T ss_pred HHHHHHHH
Confidence 99998876
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=6.4e-12 Score=132.03 Aligned_cols=217 Identities=16% Similarity=0.054 Sum_probs=132.7
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
..+..+++|.+|++++|+++++..+.-..-+....+ +||+||+|+|||+++++++..+.
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~-------------------- 68 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG-------------------- 68 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------------------
Confidence 445567899999999999999998855443333334 55589999999999999998752
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccC-CHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL-DEGI 240 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l-~~~~ 240 (603)
.+++.++... .+ +..+ ...+.. ..... . ..+...+|||||++.+ ..+.
T Consensus 69 ----------------------~~~~~i~~~~--~~-~~~i--~~~l~~-~~~~~-~--~~~~~~vliiDe~d~l~~~~~ 117 (316)
T PHA02544 69 ----------------------AEVLFVNGSD--CR-IDFV--RNRLTR-FASTV-S--LTGGGKVIIIDEFDRLGLADA 117 (316)
T ss_pred ----------------------ccceEeccCc--cc-HHHH--HHHHHH-HHHhh-c--ccCCCeEEEEECcccccCHHH
Confidence 1222222221 11 1100 000000 00000 0 0134679999999999 6777
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.|...++... .++.+|.|+| ....+.++|.+||... .+.. ++.+++.+++......
T Consensus 118 ~~~L~~~le~~~-------------~~~~~Ilt~n-~~~~l~~~l~sR~~~i-~~~~-p~~~~~~~il~~~~~~------ 175 (316)
T PHA02544 118 QRHLRSFMEAYS-------------KNCSFIITAN-NKNGIIEPLRSRCRVI-DFGV-PTKEEQIEMMKQMIVR------ 175 (316)
T ss_pred HHHHHHHHHhcC-------------CCceEEEEcC-ChhhchHHHHhhceEE-EeCC-CCHHHHHHHHHHHHHH------
Confidence 788887787532 3567888888 5567889999999754 6653 4667776665532111
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
+.. ......+.++++++..+++..+. +.|..+..+. .++ ....++.+++...
T Consensus 176 ---------------~~~-~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~---~~~---~~~~i~~~~l~~~ 227 (316)
T PHA02544 176 ---------------CKG-ILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQ---RYA---STGKIDAGILSEV 227 (316)
T ss_pred ---------------HHH-HHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHH---HHH---ccCCCCHHHHHHh
Confidence 100 01123577999999998877653 4576666554 222 2246787776553
No 150
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=8e-12 Score=130.96 Aligned_cols=218 Identities=18% Similarity=0.211 Sum_probs=136.6
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
.+..+++|.+|++++|+++++..|.-..-.....++||+||+|||||++++++++.+.... |
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~----------------~-- 67 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED----------------W-- 67 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc----------------c--
Confidence 3556789999999999999999886655444556799999999999999999998863100 0
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
...++.+.... ..-... +...+..-. .-..+..+...+|+|||++.+....++.
T Consensus 68 -------------------~~~~i~~~~~~--~~~~~~--~~~~i~~~~---~~~~~~~~~~~vviiDe~~~l~~~~~~~ 121 (319)
T PRK00440 68 -------------------RENFLELNASD--ERGIDV--IRNKIKEFA---RTAPVGGAPFKIIFLDEADNLTSDAQQA 121 (319)
T ss_pred -------------------ccceEEecccc--ccchHH--HHHHHHHHH---hcCCCCCCCceEEEEeCcccCCHHHHHH
Confidence 11233332111 000000 000000000 0001112335699999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+..++... .+..+|.++| ....+.+++.+|+.. +.+. |++.++...++...
T Consensus 122 L~~~le~~~-------------~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~l~~~ei~~~l~~~------------ 173 (319)
T PRK00440 122 LRRTMEMYS-------------QNTRFILSCN-YSSKIIDPIQSRCAV-FRFS-PLKKEAVAERLRYI------------ 173 (319)
T ss_pred HHHHHhcCC-------------CCCeEEEEeC-CccccchhHHHHhhe-eeeC-CCCHHHHHHHHHHH------------
Confidence 999987532 1335566666 445566788899875 4776 55555444333311
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
++ ...+.++++++.+|+..+ +. ..|..+..++.+.. . ...||.++|..++
T Consensus 174 ---------------~~--~~~~~i~~~al~~l~~~~---~g-d~r~~~~~l~~~~~----~-~~~it~~~v~~~~ 223 (319)
T PRK00440 174 ---------------AE--NEGIEITDDALEAIYYVS---EG-DMRKAINALQAAAA----T-GKEVTEEAVYKIT 223 (319)
T ss_pred ---------------HH--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH----c-CCCCCHHHHHHHh
Confidence 01 125679999999998764 22 57888888864443 2 3579999998765
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.2e-12 Score=144.39 Aligned_cols=231 Identities=19% Similarity=0.198 Sum_probs=139.0
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC-CCCCCcc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEW 161 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~-~~~~~~~ 161 (603)
.+..+++|..|++|+||+.+++.|.-+.......| +||+||+|+|||++|+.++..+ +|. +......
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L-----------nC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL-----------NCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------cccccCCCCCc
Confidence 34456799999999999999998866555444444 6999999999999999999886 342 1112234
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
|..|..-.. ....++.+.... -.|.-++.. +... ....| ..+...|++|||++.|..+.+
T Consensus 76 C~~C~~~~~-----------~~~Dvieidaas----n~~vd~IRe-Lie~-~~~~P---~~g~~KV~IIDEa~~LT~~A~ 135 (725)
T PRK07133 76 CQECIENVN-----------NSLDIIEMDAAS----NNGVDEIRE-LIEN-VKNLP---TQSKYKIYIIDEVHMLSKSAF 135 (725)
T ss_pred hhHHHHhhc-----------CCCcEEEEeccc----cCCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhCCHHHH
Confidence 544432110 122233332100 011100111 1000 00011 123456999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
+.||..|++.. ..+++|.+++ +...|.+.+++|+. .+.+. |+..++..+.+....
T Consensus 136 NALLKtLEEPP-------------~~tifILaTt-e~~KLl~TI~SRcq-~ieF~-~L~~eeI~~~L~~il--------- 190 (725)
T PRK07133 136 NALLKTLEEPP-------------KHVIFILATT-EVHKIPLTILSRVQ-RFNFR-RISEDEIVSRLEFIL--------- 190 (725)
T ss_pred HHHHHHhhcCC-------------CceEEEEEcC-ChhhhhHHHHhhce-eEEcc-CCCHHHHHHHHHHHH---------
Confidence 99999999742 3455665555 55688889999996 44776 445554443333210
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
. ...+.++++++..|+..+. .++|..+.++..+. .+. ...|+.++|.++
T Consensus 191 ------------------~--kegI~id~eAl~~LA~lS~----GslR~AlslLekl~---~y~-~~~It~e~V~el 239 (725)
T PRK07133 191 ------------------E--KENISYEKNALKLIAKLSS----GSLRDALSIAEQVS---IFG-NNKITLKNVEEL 239 (725)
T ss_pred ------------------H--HcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH---Hhc-cCCCCHHHHHHH
Confidence 0 1146788888888876642 25787777765443 232 344777777654
No 152
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4e-13 Score=134.63 Aligned_cols=224 Identities=21% Similarity=0.261 Sum_probs=138.8
Q ss_pred CCCCCCCCcccccHHHHHHHH----Hhhhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALL----LGAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~----laav~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
+.+.-++.+|-|.+.-+..+. +-...| ...||+|||+||||||+||+++|+..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-------------- 243 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-------------- 243 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc--------------
Confidence 346677999999986655553 322222 24679999999999999999999753
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
...|..+-.+.....++| .|.+ +..-+|.-| ...|+|||
T Consensus 244 ----------------------------SATFlRvvGseLiQkylG---------dGpk-lvRqlF~vA~e~apSIvFiD 285 (440)
T KOG0726|consen 244 ----------------------------SATFLRVVGSELIQKYLG---------DGPK-LVRELFRVAEEHAPSIVFID 285 (440)
T ss_pred ----------------------------chhhhhhhhHHHHHHHhc---------cchH-HHHHHHHHHHhcCCceEEee
Confidence 344544444444444444 2433 222344444 35799999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 232 Ei~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
||+.+. .++|..+|.+++.-. |... ..++-+|.+|| .-..|+|+|++ |++..|+++.|
T Consensus 286 EIdAiGtKRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimATn-rie~LDPaLiRPGrIDrKIef~~p 356 (440)
T KOG0726|consen 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATN-RIETLDPALIRPGRIDRKIEFPLP 356 (440)
T ss_pred hhhhhccccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEecc-cccccCHhhcCCCccccccccCCC
Confidence 999773 478999998887532 3222 23688999999 66778999997 99999999865
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
|...+..|+.....-. .|.+.+..-.-....-.+|..-+. .+..-|
T Consensus 357 -De~TkkkIf~IHTs~M---------------tl~~dVnle~li~~kddlSGAdIk------------------AictEa 402 (440)
T KOG0726|consen 357 -DEKTKKKIFQIHTSRM---------------TLAEDVNLEELIMTKDDLSGADIK------------------AICTEA 402 (440)
T ss_pred -chhhhceeEEEeeccc---------------chhccccHHHHhhcccccccccHH------------------HHHHHH
Confidence 6666666654321100 000000000000001122222222 223334
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
.-+|..+.|..|+.+|+..|.+-|+...
T Consensus 403 GllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 403 GLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 4466667788999999999999998765
No 153
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=3e-12 Score=149.29 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=108.4
Q ss_pred CCCCCCCcccccHHHHHHHHHhhh----c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav----~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.++|++|.|.+..+..+.-... . ....+|||+||||||||++++++++.+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--------------- 236 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--------------- 236 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---------------
Confidence 356899999999999888732221 1 124679999999999999999999986
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+.+|+.+........+.|.. +.. ...++..+ ...||||||
T Consensus 237 ---------------------------~~~~i~i~~~~i~~~~~g~~--~~~--------l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 237 ---------------------------GAYFISINGPEIMSKYYGES--EER--------LREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred ---------------------------CCeEEEEecHHHhcccccHH--HHH--------HHHHHHHHHhcCCcEEEeeh
Confidence 33455554443334444431 000 11233332 347999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.+. ..+++.|+..|+.-. ....+++|+++| ....+++++.+ ||+..+.+..|
T Consensus 280 id~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn-~~~~ld~al~r~gRfd~~i~i~~P- 346 (733)
T TIGR01243 280 IDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATN-RPDALDPALRRPGRFDREIVIRVP- 346 (733)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecC-ChhhcCHHHhCchhccEEEEeCCc-
Confidence 98763 357788888887432 012578999999 56678899887 99999999854
Q ss_pred CHHHHHHHHHH
Q 007444 300 TFEDRVAAVGI 310 (603)
Q Consensus 300 ~~e~r~eI~~~ 310 (603)
+.++|.+|+..
T Consensus 347 ~~~~R~~Il~~ 357 (733)
T TIGR01243 347 DKRARKEILKV 357 (733)
T ss_pred CHHHHHHHHHH
Confidence 88889998873
No 154
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.9e-13 Score=142.90 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=120.1
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCC------------CcEEEECCCCChHHHHHHHHHHhCCCCeeecccccc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIAN 152 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~------------~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n 152 (603)
+....+.+-|++|.|.+.+|+.+...++.|.. +++||+||||||||+|+++||.++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------------ 210 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------------ 210 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------------
Confidence 34445678999999999999999766665533 569999999999999999999886
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEE
Q 007444 153 ADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLY 229 (603)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ 229 (603)
...|+.+..+.....|+|.. ++. -..+|.-| ..+|+|
T Consensus 211 ------------------------------~atff~iSassLtsK~~Ge~--eK~--------vralf~vAr~~qPsvif 250 (428)
T KOG0740|consen 211 ------------------------------GATFFNISASSLTSKYVGES--EKL--------VRALFKVARSLQPSVIF 250 (428)
T ss_pred ------------------------------cceEeeccHHHhhhhccChH--HHH--------HHHHHHHHHhcCCeEEE
Confidence 67899999888889999963 222 22344333 357999
Q ss_pred ecccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCC
Q 007444 230 IDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLP 298 (603)
Q Consensus 230 IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p 298 (603)
||||+.+ ++.+...+|-..+ |....-..+++|||||| -++++++++++||..++.|+.|
T Consensus 251 idEidslls~Rs~~e~e~srr~ktefLiq~~---------~~~s~~~drvlvigaTN-~P~e~Dea~~Rrf~kr~yiplP 320 (428)
T KOG0740|consen 251 IDEIDSLLSKRSDNEHESSRRLKTEFLLQFD---------GKNSAPDDRVLVIGATN-RPWELDEAARRRFVKRLYIPLP 320 (428)
T ss_pred echhHHHHhhcCCcccccchhhhhHHHhhhc---------cccCCCCCeEEEEecCC-CchHHHHHHHHHhhceeeecCC
Confidence 9999876 2222222222221 22222233789999999 8999999999999999999854
Q ss_pred CCHHHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIA 311 (603)
Q Consensus 299 ~~~e~r~eI~~~~ 311 (603)
+.+.|..++...
T Consensus 321 -d~etr~~~~~~l 332 (428)
T KOG0740|consen 321 -DYETRSLLWKQL 332 (428)
T ss_pred -CHHHHHHHHHHH
Confidence 888888776643
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.3e-12 Score=141.26 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=141.3
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC---------
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP--------- 155 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~--------- 155 (603)
..+++|..|++|+||+.++..|.-+..+....| +||+||+|||||++|+.+++.+ +|..
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-----------~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-----------NCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCcCCcccccc
Confidence 346789999999999999998866554444445 9999999999999999999987 4521
Q ss_pred --CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEeccc
Q 007444 156 --TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (603)
Q Consensus 156 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi 233 (603)
..+..-|..|..... . .+..|+.+.... ..|.-++..... .....| ..+...|++|||+
T Consensus 76 ~~~~~Cg~C~sC~~~~~---g-------~~~n~~~~d~~s----~~~vd~Ir~l~e--~~~~~P---~~~~~KVvIIdEa 136 (620)
T PRK14954 76 EVTEPCGECESCRDFDA---G-------TSLNISEFDAAS----NNSVDDIRQLRE--NVRYGP---QKGRYRVYIIDEV 136 (620)
T ss_pred ccCCCCccCHHHHHHhc---c-------CCCCeEEecccc----cCCHHHHHHHHH--HHHhhh---hcCCCEEEEEeCh
Confidence 123334444443211 0 133455443211 111111111100 000111 2335569999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 234 ~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
+.+..+.++.||..|++-. ...++|.+++ +...+-+.+.+|.... .+. +.+.++....+..
T Consensus 137 d~Lt~~a~naLLK~LEePp-------------~~tv~IL~t~-~~~kLl~TI~SRc~~v-ef~-~l~~~ei~~~L~~--- 197 (620)
T PRK14954 137 HMLSTAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQRF-NFK-RIPLDEIQSQLQM--- 197 (620)
T ss_pred hhcCHHHHHHHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhhceEE-ecC-CCCHHHHHHHHHH---
Confidence 9999999999999999742 2345555554 4466777888887554 666 4444432222211
Q ss_pred HHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH-cCCCCCcH
Q 007444 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNV 392 (603)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal-~gr~~Vt~ 392 (603)
+.. ...+.++++++++|+..+ +. ++|..+..+.....++.- .....|+.
T Consensus 198 ----------------------i~~----~egi~I~~eal~~La~~s---~G-dlr~al~eLeKL~~y~~~~~~~~~It~ 247 (620)
T PRK14954 198 ----------------------ICR----AEGIQIDADALQLIARKA---QG-SMRDAQSILDQVIAFSVGSEAEKVIAY 247 (620)
T ss_pred ----------------------HHH----HcCCCCCHHHHHHHHHHh---CC-CHHHHHHHHHHHHHhccccccCCccCH
Confidence 110 124679999999998876 22 578777776543332210 12456888
Q ss_pred HHHHHHH
Q 007444 393 DDLKKAV 399 (603)
Q Consensus 393 eDv~~A~ 399 (603)
++|.+.+
T Consensus 248 ~~V~~lv 254 (620)
T PRK14954 248 QGVAELL 254 (620)
T ss_pred HHHHHHH
Confidence 8776643
No 156
>PRK04195 replication factor C large subunit; Provisional
Probab=99.38 E-value=1.1e-11 Score=137.98 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=128.8
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhh---cc-CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAI---DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav---~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+..+++|..|++|+|++.++..|.-.+- .. ...++||+||||||||++|+++++.+.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~------------------ 64 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG------------------ 64 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC------------------
Confidence 45567899999999999999988843221 11 146799999999999999999999873
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcc-----ccccccccchhccccCcccccccchhcccCceEEecccc
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~-----~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~ 234 (603)
..++.++.+... ..+++.. .....++ .....+|+|||++
T Consensus 65 ------------------------~~~ielnasd~r~~~~i~~~i~~~-----------~~~~sl~-~~~~kvIiIDEaD 108 (482)
T PRK04195 65 ------------------------WEVIELNASDQRTADVIERVAGEA-----------ATSGSLF-GARRKLILLDEVD 108 (482)
T ss_pred ------------------------CCEEEEcccccccHHHHHHHHHHh-----------hccCccc-CCCCeEEEEecCc
Confidence 223333221100 0111110 0000111 0245699999999
Q ss_pred cCCH----HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccH-HHHhhhcccccccCCCCHHHHHHHHH
Q 007444 235 LLDE----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 235 ~l~~----~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~-~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
.+.. ..++.|+..++... ..+|.++| +...+.. .|.+|+ ..|.+. +++.++...++.
T Consensus 109 ~L~~~~d~~~~~aL~~~l~~~~---------------~~iIli~n-~~~~~~~k~Lrsr~-~~I~f~-~~~~~~i~~~L~ 170 (482)
T PRK04195 109 GIHGNEDRGGARAILELIKKAK---------------QPIILTAN-DPYDPSLRELRNAC-LMIEFK-RLSTRSIVPVLK 170 (482)
T ss_pred ccccccchhHHHHHHHHHHcCC---------------CCEEEecc-CccccchhhHhccc-eEEEec-CCCHHHHHHHHH
Confidence 9965 66888999887542 23455666 4455555 555554 455776 456665544443
Q ss_pred HHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCC
Q 007444 310 IATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (603)
Q Consensus 310 ~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~ 389 (603)
.. .. ...+.++++++..|++.+ +. ..|..++.+.. + ..|...
T Consensus 171 ~i-------------------------~~----~egi~i~~eaL~~Ia~~s---~G-DlR~ain~Lq~---~--a~~~~~ 212 (482)
T PRK04195 171 RI-------------------------CR----KEGIECDDEALKEIAERS---GG-DLRSAINDLQA---I--AEGYGK 212 (482)
T ss_pred HH-------------------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---H--hcCCCC
Confidence 21 11 125679999999998764 22 57888887744 2 246678
Q ss_pred CcHHHHHHHH
Q 007444 390 VNVDDLKKAV 399 (603)
Q Consensus 390 Vt~eDv~~A~ 399 (603)
|+.+++....
T Consensus 213 it~~~v~~~~ 222 (482)
T PRK04195 213 LTLEDVKTLG 222 (482)
T ss_pred CcHHHHHHhh
Confidence 9999887653
No 157
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.38 E-value=1.3e-11 Score=143.67 Aligned_cols=229 Identities=18% Similarity=0.245 Sum_probs=137.9
Q ss_pred cccccHHHHHHHH--Hhhh---c-cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 96 AVVGQDAIKTALL--LGAI---D-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 96 ~IvGq~~~k~aL~--laav---~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
++.|++.+|+.++ ++.. + .....++|+||||+|||++++.++..+.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~---------------------------- 374 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG---------------------------- 374 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC----------------------------
Confidence 4899999999884 3321 1 2234599999999999999999999874
Q ss_pred cccccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccccccchh----c--ccCceEEecccccCCHHH-
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLA----E--AHRGVLYIDEINLLDEGI- 240 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~~~Gll~----~--A~~gIL~IDEi~~l~~~~- 240 (603)
.+|+.+..+. .+..+.|+. ..+.|. .+|.+. . ..+.|++||||+.++...
T Consensus 375 --------------~~~~~i~~~~~~d~~~i~g~~----~~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 375 --------------RKYVRMALGGVRDEAEIRGHR----RTYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred --------------CCEEEEEcCCCCCHHHhccch----hccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 3444433222 222344431 001111 233332 1 235699999999998765
Q ss_pred ---HHHHHHHHHcCceeEeeCC-eeeEec-CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 241 ---SNLLLNVLTEGVNIVEREG-ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 241 ---~~~LL~~l~~g~~~v~r~G-~s~~~p-~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
++.|+.+++.+.+....+. ..+.+. .++++|+|+|.. .++++|+|||.++ .+. +++.++..+|.++.+.-
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ii-~~~-~~t~eek~~Ia~~~L~~- 508 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRMEVI-RLS-GYTEDEKLNIAKRHLLP- 508 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhcceeee-ecC-CCCHHHHHHHHHHhhhH-
Confidence 5999999997665433221 111111 368899999965 4999999999765 665 67889988888754311
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHH-HHHHHH---HHcCC---C
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR-VAKCLA---ALEGR---E 388 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr-~Ara~A---al~gr---~ 388 (603)
..+.........+.++++++.+|++.+.+ -.|.|..-+.+. .++..+ .+.+. -
T Consensus 509 ------------------k~~~~~~l~~~~l~i~~~ai~~ii~~yt~--e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v 568 (784)
T PRK10787 509 ------------------KQIERNALKKGELTVDDSAIIGIIRYYTR--EAGVRSLEREISKLCRKAVKQLLLDKSLKHI 568 (784)
T ss_pred ------------------HHHHHhCCCCCeEEECHHHHHHHHHhCCc--ccCCcHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 11111111113578999999999874432 224455443332 222222 22332 2
Q ss_pred CCcHHHHHHH
Q 007444 389 KVNVDDLKKA 398 (603)
Q Consensus 389 ~Vt~eDv~~A 398 (603)
.|+.+++.+.
T Consensus 569 ~v~~~~~~~~ 578 (784)
T PRK10787 569 EINGDNLHDY 578 (784)
T ss_pred eecHHHHHHH
Confidence 4777777643
No 158
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.38 E-value=6.2e-13 Score=123.03 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=89.2
Q ss_pred cccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccc
Q 007444 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (603)
Q Consensus 98 vGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~ 175 (603)
||.+..++.+ .+..+.....+|||+|++||||+++|++||.....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--------------------------------- 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--------------------------------- 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---------------------------------
Confidence 5667666666 34444456789999999999999999999987642
Q ss_pred cccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeE
Q 007444 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (603)
Q Consensus 176 ~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v 255 (603)
...+|+.+.+.... ..++..+.+|+|||+||+.|+.+.|..|+..+....
T Consensus 48 ------~~~~~~~~~~~~~~---------------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--- 97 (138)
T PF14532_consen 48 ------ANGPFIVIDCASLP---------------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--- 97 (138)
T ss_dssp ------CCS-CCCCCHHCTC---------------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT---
T ss_pred ------cCCCeEEechhhCc---------------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC---
Confidence 13344443332211 125566789999999999999999999999998642
Q ss_pred eeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCC
Q 007444 256 EREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPM 299 (603)
Q Consensus 256 ~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~ 299 (603)
..++.+|+++..+ ++.++++|++||+.. .+..|+
T Consensus 98 ---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~-~i~lPp 137 (138)
T PF14532_consen 98 ---------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQL-EIHLPP 137 (138)
T ss_dssp ---------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTC-EEEE--
T ss_pred ---------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCC-EEeCCC
Confidence 1256788888753 267999999999876 565554
No 159
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.38 E-value=6.6e-12 Score=142.35 Aligned_cols=243 Identities=17% Similarity=0.081 Sum_probs=146.8
Q ss_pred CCCCcccccHHHHHHHHH---hhh-ccCCCcE-EEECCCCChHHHHHHHHHHhCCCC------eeeccccccCCCC-CCC
Q 007444 92 FPLAAVVGQDAIKTALLL---GAI-DREIGGI-AISGRRGTAKTVMARGLHAILPPI------EVVVGSIANADPT-CPD 159 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l---aav-~p~~~gV-LL~GppGTGKT~lArala~~l~~~------~~~~~~~~n~~~~-~~~ 159 (603)
+--+.|+|++.-+..|.. .++ ..+.+++ +|+|+||||||++++.+...|... ..+...++||... .+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 334789999987777732 223 2233344 699999999999999998776311 1123345666321 111
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccC--ceEEecccccCC
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHR--GVLYIDEINLLD 237 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~--gIL~IDEi~~l~ 237 (603)
.....+...+ . ...|...++.....+++|.. +....+ -||+||||+.|.
T Consensus 832 sIYqvI~qqL----~-------g~~P~~GlsS~evLerLF~~------------------L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 832 AAYQVLYKQL----F-------NKKPPNALNSFKILDRLFNQ------------------NKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHHH----c-------CCCCCccccHHHHHHHHHhh------------------hhcccccceEEEeehHhhhC
Confidence 1111110000 0 00000000000000011110 001111 389999999998
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC--CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~--eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
...++.|+.+++... . ...+++|||.+|.. ...|.+.+..||+....+..|++.+++.+|+..+...
T Consensus 883 kK~QDVLYnLFR~~~--~--------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~- 951 (1164)
T PTZ00112 883 TKTQKVLFTLFDWPT--K--------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN- 951 (1164)
T ss_pred ccHHHHHHHHHHHhh--c--------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-
Confidence 766777777766322 1 12357899999953 2457788999998753344599999999998754321
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
+ ...+++++++++++.+...+. ..|.++.+++.|..+ .+...|+++||
T Consensus 952 -----------------------A-----~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEi---kegskVT~eHV 999 (1164)
T PTZ00112 952 -----------------------C-----KEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFEN---KRGQKIVPRDI 999 (1164)
T ss_pred -----------------------C-----CCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHH
Confidence 1 235999999999997776554 589999999988875 35568999999
Q ss_pred HHHHHHHcCCC
Q 007444 396 KKAVELVILPR 406 (603)
Q Consensus 396 ~~A~~lvl~hR 406 (603)
.+|...+..-+
T Consensus 1000 rkAleeiE~sr 1010 (1164)
T PTZ00112 1000 TEATNQLFDSP 1010 (1164)
T ss_pred HHHHHHHHhhh
Confidence 99998775554
No 160
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=1.8e-11 Score=130.54 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=139.7
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDE 160 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~ 160 (603)
+..+.+|..|++|+||+.++..|.-...+....+ +||+||+|+|||++|+.+++.+. |... .+..
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~-----------~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN-----------CQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCC
Confidence 4456788999999999999998865554433343 79999999999999999998873 2210 1222
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.|..|..... + ....++.+.... ..+.-++.. +.... ...| ..++..|++|||++.+....
T Consensus 73 ~c~~c~~~~~----~------~~~~~~~~~~~~----~~~~~~~~~-l~~~~-~~~p---~~~~~~vviidea~~l~~~~ 133 (355)
T TIGR02397 73 ECESCKEINS----G------SSLDVIEIDAAS----NNGVDDIRE-ILDNV-KYAP---SSGKYKVYIIDEVHMLSKSA 133 (355)
T ss_pred CCHHHHHHhc----C------CCCCEEEeeccc----cCCHHHHHH-HHHHH-hcCc---ccCCceEEEEeChhhcCHHH
Confidence 2333322110 0 123344443221 001000000 00000 0011 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.|+..+++. |.++++|.++| +...+.+.+..|+.. +.+. |++.++..+++....
T Consensus 134 ~~~Ll~~le~~-------------~~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~~~~~~l~~~l~~~~-------- 189 (355)
T TIGR02397 134 FNALLKTLEEP-------------PEHVVFILATT-EPHKIPATILSRCQR-FDFK-RIPLEDIVERLKKIL-------- 189 (355)
T ss_pred HHHHHHHHhCC-------------ccceeEEEEeC-CHHHHHHHHHhheeE-EEcC-CCCHHHHHHHHHHHH--------
Confidence 99999999763 23456666666 445667788899854 4665 556665554443210
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+. ..+.++++++.+|++.+ +. +.|..+..+..+.. +.+ ..||.+||++++
T Consensus 190 -------------------~~--~g~~i~~~a~~~l~~~~---~g-~~~~a~~~lekl~~---~~~-~~it~~~v~~~~ 239 (355)
T TIGR02397 190 -------------------DK--EGIKIEDEALELIARAA---DG-SLRDALSLLDQLIS---FGN-GNITYEDVNELL 239 (355)
T ss_pred -------------------HH--cCCCCCHHHHHHHHHHc---CC-ChHHHHHHHHHHHh---hcC-CCCCHHHHHHHh
Confidence 11 24679999998888764 22 46777766644333 333 459999998765
No 161
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2.3e-11 Score=133.76 Aligned_cols=232 Identities=21% Similarity=0.223 Sum_probs=138.4
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC-CCC---CC
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTC---PD 159 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~-~~~---~~ 159 (603)
...+++|..|++|+||+.++..|.-........+ +||+||+|+|||++|+.+++.+. |. +.. +.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~-----------c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN-----------CQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc-----------CCCcccCCCCC
Confidence 3456789999999999999998865444333434 89999999999999999999873 32 111 11
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~ 239 (603)
.-|..|.... .. ....|+.+.... ..|.-++.. +.. ...+.+ ..++..|++|||++.+..+
T Consensus 76 ~~c~~C~~i~---~~-------~~~d~~~i~g~~----~~gid~ir~-i~~-~l~~~~---~~~~~kvvIIdead~lt~~ 136 (451)
T PRK06305 76 NQCASCKEIS---SG-------TSLDVLEIDGAS----HRGIEDIRQ-INE-TVLFTP---SKSRYKIYIIDEVHMLTKE 136 (451)
T ss_pred cccHHHHHHh---cC-------CCCceEEeeccc----cCCHHHHHH-HHH-HHHhhh---hcCCCEEEEEecHHhhCHH
Confidence 1222332211 00 122344442211 111111111 000 001111 2245679999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.|+..|++.. ..+++|.++| +...+.+.|.+|+... .+. +.+.++..+.+...
T Consensus 137 ~~n~LLk~lEep~-------------~~~~~Il~t~-~~~kl~~tI~sRc~~v-~f~-~l~~~el~~~L~~~-------- 192 (451)
T PRK06305 137 AFNSLLKTLEEPP-------------QHVKFFLATT-EIHKIPGTILSRCQKM-HLK-RIPEETIIDKLALI-------- 192 (451)
T ss_pred HHHHHHHHhhcCC-------------CCceEEEEeC-ChHhcchHHHHhceEE-eCC-CCCHHHHHHHHHHH--------
Confidence 9999999999742 2456666666 4567888999998764 776 44554433322211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
++ ...+.++++++..|+..+ +. +.|..+..+.... .+.+ ..|+.++|..++
T Consensus 193 -------------------~~--~eg~~i~~~al~~L~~~s---~g-dlr~a~~~Lekl~---~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 193 -------------------AK--QEGIETSREALLPIARAA---QG-SLRDAESLYDYVV---GLFP-KSLDPDSVAKAL 243 (451)
T ss_pred -------------------HH--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hhcc-CCcCHHHHHHHH
Confidence 01 125679999998888775 22 5687777765433 2344 348887776543
No 162
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=1.6e-11 Score=123.91 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=123.2
Q ss_pred CCCCCCccc-c-cHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 90 QFFPLAAVV-G-QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 90 ~~~~f~~Iv-G-q~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
..++|++++ | ...+..++....-.+...+++|+||+|||||+|++++++.+....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~----------------------- 73 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG----------------------- 73 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 356788876 5 445555554333345557899999999999999999987652100
Q ss_pred cccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCC--HHHHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLLL 245 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~--~~~~~~LL 245 (603)
....|+.+... ... .. + + ..+ +.. -.+|+||||+.+. +..+..|.
T Consensus 74 --------------~~v~y~~~~~~--~~~-~~--~----~-------~~~-~~~--~dlliiDdi~~~~~~~~~~~~lf 120 (235)
T PRK08084 74 --------------RAVGYVPLDKR--AWF-VP--E----V-------LEG-MEQ--LSLVCIDNIECIAGDELWEMAIF 120 (235)
T ss_pred --------------CeEEEEEHHHH--hhh-hH--H----H-------HHH-hhh--CCEEEEeChhhhcCCHHHHHHHH
Confidence 01222222110 000 00 0 0 000 111 1489999999985 33344444
Q ss_pred HH----HHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 246 NV----LTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 246 ~~----l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.+ ++.|. ..+|.|++..+. .+.++|..||. +.+.+. |++.+.+.++++..
T Consensus 121 ~l~n~~~e~g~---------------~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~-~~~~~~~~~~l~~~----- 179 (235)
T PRK08084 121 DLYNRILESGR---------------TRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ-PLSDEEKLQALQLR----- 179 (235)
T ss_pred HHHHHHHHcCC---------------CeEEEeCCCChHHcCcccHHHHHHHhCCceeeec-CCCHHHHHHHHHHH-----
Confidence 44 44332 234445542322 35699999995 666777 66778887776531
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
+.. ..+.++++++++|+..+.. +.|..+.++.... .+++.....||.+.++
T Consensus 180 ----------------------a~~--~~~~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~l~~~~~it~~~~k 230 (235)
T PRK08084 180 ----------------------ARL--RGFELPEDVGRFLLKRLDR----EMRTLFMTLDQLD-RASITAQRKLTIPFVK 230 (235)
T ss_pred ----------------------HHH--cCCCCCHHHHHHHHHhhcC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHH
Confidence 111 2488999999999887632 5688888887654 4445544469999999
Q ss_pred HHHH
Q 007444 397 KAVE 400 (603)
Q Consensus 397 ~A~~ 400 (603)
+++.
T Consensus 231 ~~l~ 234 (235)
T PRK08084 231 EILK 234 (235)
T ss_pred HHHc
Confidence 8865
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=1.5e-11 Score=144.61 Aligned_cols=213 Identities=21% Similarity=0.243 Sum_probs=137.1
Q ss_pred CcccccHHHHHHHHHhh-------hccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGA-------IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laa-------v~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||+.++.++.-+. .+|. .+.+||.||+|||||.+|++|+..+-.-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---------------------- 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---------------------- 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----------------------
Confidence 46899999999883322 1332 2348999999999999999999987310
Q ss_pred cccccccccccccccccCCCeEEcCC-----CCccccccccccchhccccCcccccccchhcc----cCceEEecccccC
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPL-----GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLL 236 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~-----~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l 236 (603)
...|+.+.. ..+..+|+|..-- +-|. .+.|.|..+ ..+||+||||+.+
T Consensus 624 -----------------~~~~~~~dmse~~~~~~~~~l~g~~~g----yvg~--~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 624 -----------------EQNLITINMSEFQEAHTVSRLKGSPPG----YVGY--GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred -----------------CcceEEEeHHHhhhhhhhccccCCCCC----cccc--cccchHHHHHHhCCCcEEEEechhhc
Confidence 112333222 1233455553100 0011 122444333 4579999999999
Q ss_pred CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----------------------------CCccHHHHhh
Q 007444 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------------GVVREHLLDR 288 (603)
Q Consensus 237 ~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------------------------g~L~~~LldR 288 (603)
++++++.|++++++|.++ ...|..+.+. +.++|.|+|... ..|+|+|++|
T Consensus 681 ~~~v~~~Llq~ld~g~l~-d~~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR 758 (852)
T TIGR03345 681 HPDVLELFYQVFDKGVME-DGEGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR 758 (852)
T ss_pred CHHHHHHHHHHhhcceee-cCCCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc
Confidence 999999999999999864 3345555544 688999999510 1277999999
Q ss_pred hcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCch
Q 007444 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (603)
Q Consensus 289 f~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~ 368 (603)
++ .|.+. |.+.+...+|+...+.- +..++. ....-.+.++++++++|++.+..... |.
T Consensus 759 i~-iI~F~-pLs~e~l~~Iv~~~L~~-----------------l~~rl~--~~~gi~l~i~d~a~~~La~~g~~~~~-GA 816 (852)
T TIGR03345 759 MT-VIPYL-PLDDDVLAAIVRLKLDR-----------------IARRLK--ENHGAELVYSEALVEHIVARCTEVES-GA 816 (852)
T ss_pred ee-EEEeC-CCCHHHHHHHHHHHHHH-----------------HHHHHH--HhcCceEEECHHHHHHHHHHcCCCCC-Ch
Confidence 98 44554 88999888888754321 111211 11122478999999999998765322 56
Q ss_pred hHHHHHHH
Q 007444 369 RAELYAAR 376 (603)
Q Consensus 369 Ra~i~llr 376 (603)
|...++++
T Consensus 817 R~L~r~Ie 824 (852)
T TIGR03345 817 RNIDAILN 824 (852)
T ss_pred HHHHHHHH
Confidence 76666654
No 164
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.1e-12 Score=134.44 Aligned_cols=237 Identities=19% Similarity=0.143 Sum_probs=153.4
Q ss_pred CcccccHHHHHHHHHh---hh-ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeec-cccccCCCCCCCcccccccccc
Q 007444 95 AAVVGQDAIKTALLLG---AI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVV-GSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 95 ~~IvGq~~~k~aL~la---av-~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~-~~~~n~~~~~~~~~~~~~~~~i 169 (603)
+.+.+.+.-+..|... ++ +....+++|+|+||||||++++.+.+.+....... .+++||....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~------------ 84 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR------------ 84 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC------------
Confidence 3488999888777432 22 22334599999999999999999999886543222 5778883321
Q ss_pred ccccccccccccc---CCCeEEcCCCCccccccccccchhccccCcccccccchh-cccCceEEecccccCCHH---HHH
Q 007444 170 EYDTAGNLKTQIA---RSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEG---ISN 242 (603)
Q Consensus 170 ~~~~~~~~~~~~~---~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~-~A~~gIL~IDEi~~l~~~---~~~ 242 (603)
+.......+.. ..| ..+....+++..+ . ..+. ....-|++|||+|.|-.. ++.
T Consensus 85 --t~~~i~~~i~~~~~~~p----~~g~~~~~~~~~l-------------~-~~~~~~~~~~IvvLDEid~L~~~~~~~LY 144 (366)
T COG1474 85 --TPYQVLSKILNKLGKVP----LTGDSSLEILKRL-------------Y-DNLSKKGKTVIVILDEVDALVDKDGEVLY 144 (366)
T ss_pred --CHHHHHHHHHHHcCCCC----CCCCchHHHHHHH-------------H-HHHHhcCCeEEEEEcchhhhccccchHHH
Confidence 11111101000 111 1112222222111 0 0111 112238889999999666 444
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC--CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~--eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
.|+.+.+.. ..++.+|+.+|.. ...|++-+.++|+..-.+..|++.++..+|+..+..
T Consensus 145 ~L~r~~~~~-------------~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~------- 204 (366)
T COG1474 145 SLLRAPGEN-------------KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE------- 204 (366)
T ss_pred HHHhhcccc-------------ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH-------
Confidence 444444333 1257899999943 245778888888887434458999999999875422
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
..+..-.++++++++++..+...+. ..|..+.+++.|..+|..+++..|+.+|+..|..
T Consensus 205 --------------------~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 205 --------------------EGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred --------------------hhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 2345567999999999988776665 7899999999999999999999999999999955
Q ss_pred HHcC
Q 007444 401 LVIL 404 (603)
Q Consensus 401 lvl~ 404 (603)
.+-.
T Consensus 264 ~~~~ 267 (366)
T COG1474 264 EIER 267 (366)
T ss_pred HhhH
Confidence 5433
No 165
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-11 Score=137.59 Aligned_cols=238 Identities=22% Similarity=0.291 Sum_probs=147.7
Q ss_pred cccccHHHHHHHH-Hhhh---ccCCC-c-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 96 AVVGQDAIKTALL-LGAI---DREIG-G-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 96 ~IvGq~~~k~aL~-laav---~p~~~-g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
+..|.+++|..++ ..+| .+... + ++|+||||+|||+|++.||..+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------------------------- 374 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------------------------- 374 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----------------------------
Confidence 4578888888772 2222 33333 3 8899999999999999999987
Q ss_pred cccccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccccccchhcc------cCceEEecccccCCHH--
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEG-- 239 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A------~~gIL~IDEi~~l~~~-- 239 (603)
+..||.+.++- .+.++-|+- + -+-| .-||.+-++ .+.+++||||+.++.+
T Consensus 375 -------------~RkfvR~sLGGvrDEAEIRGHR---R-TYIG---amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 375 -------------GRKFVRISLGGVRDEAEIRGHR---R-TYIG---AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred -------------CCCEEEEecCccccHHHhcccc---c-cccc---cCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 56788876553 344444430 1 0111 136666544 5679999999999653
Q ss_pred --HHHHHHHHHHcCceeEeeC-CeeeEec-CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 240 --ISNLLLNVLTEGVNIVERE-GISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 240 --~~~~LL~~l~~g~~~v~r~-G~s~~~p-~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
-..+||.+||-..|+-.++ =..+.+. .++++|+|.| .-..++.+|+||..++ .+. -+..++..+|.+..+-
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN-sl~tIP~PLlDRMEiI-~ls-gYt~~EKl~IAk~~Li-- 509 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN-SLDTIPAPLLDRMEVI-RLS-GYTEDEKLEIAKRHLI-- 509 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC-ccccCChHHhcceeee-eec-CCChHHHHHHHHHhcc--
Confidence 3589999998655432111 1111111 3689999999 6677899999999987 777 4788999888775321
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHH-HHcCCCCchhHHHH-HHHHHHHHHHHcCCC---CC
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME-ALRGGCQGHRAELY-AARVAKCLAALEGRE---KV 390 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~-a~~~~v~s~Ra~i~-llr~Ara~Aal~gr~---~V 390 (603)
...+...----..+.++++++..|+++ +.+.|+.++...+. ++|-+..--...... .|
T Consensus 510 -----------------Pk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i 572 (782)
T COG0466 510 -----------------PKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKI 572 (782)
T ss_pred -----------------hHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceee
Confidence 111221111124688999999888775 66788866654443 332222111122222 36
Q ss_pred cHHHHHHHHHHHcCCCc
Q 007444 391 NVDDLKKAVELVILPRS 407 (603)
Q Consensus 391 t~eDv~~A~~lvl~hR~ 407 (603)
+..++.+ |.-.++-
T Consensus 573 ~~~~l~~---yLG~~~f 586 (782)
T COG0466 573 DEKNLKK---YLGVPVF 586 (782)
T ss_pred CHHHHHH---HhCCccc
Confidence 6666764 4444543
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=6.2e-12 Score=135.81 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=110.2
Q ss_pred CCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 94 f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
++++++.+.....+..+.. ..++|+|+|+||||||++|+.++..+.....
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~---------------------------- 223 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKA---------------------------- 223 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcc----------------------------
Confidence 6778887877777755544 4689999999999999999999987631000
Q ss_pred cccccccccCCCeEEcCCCCccccccccccchhccccCcccccccch----hcc-----cCceEEecccccCCHH-HHHH
Q 007444 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL----AEA-----HRGVLYIDEINLLDEG-ISNL 243 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll----~~A-----~~gIL~IDEi~~l~~~-~~~~ 243 (603)
.....+++.+...+...+++++... .....+.+|.+ ..| ++.+|||||||+.+.+ +...
T Consensus 224 -------~~~v~~VtFHpsySYeDFI~G~rP~----~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGe 292 (459)
T PRK11331 224 -------PQRVNMVQFHQSYSYEDFIQGYRPN----GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGE 292 (459)
T ss_pred -------cceeeEEeecccccHHHHhcccCCC----CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhh
Confidence 0123456666666666777543211 11234456654 222 3569999999999854 5778
Q ss_pred HHHHHHcCc------eeE---eeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhccccccc
Q 007444 244 LLNVLTEGV------NIV---EREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSAD 296 (603)
Q Consensus 244 LL~~l~~g~------~~v---~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~l~v~v~ 296 (603)
|+.+|+.+. +.+ +.++..+..|.++.+|||||..+. .++.+|++||.++ ++.
T Consensus 293 l~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi-~i~ 356 (459)
T PRK11331 293 VMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFI-DIE 356 (459)
T ss_pred hhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheE-Eec
Confidence 888887531 111 222456788999999999997653 5899999999875 776
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=1.5e-11 Score=144.93 Aligned_cols=212 Identities=23% Similarity=0.259 Sum_probs=133.8
Q ss_pred CcccccHHHHHHHHHhhh-------ccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||++++..+..+.. +|. .+.+||.||+|||||++|++|++.+-..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~---------------------- 566 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS---------------------- 566 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----------------------
Confidence 568999999998843322 222 2458999999999999999999987310
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcccccccchh----cccCceEEecccccC
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLA----EAHRGVLYIDEINLL 236 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~~~~~Gll~----~A~~gIL~IDEi~~l 236 (603)
..+|+.+..+ .+..+|+|.-.- +-|. .+.|.|. .....||+||||+.+
T Consensus 567 -----------------~~~~~~~d~s~~~~~~~~~~l~g~~~g----yvg~--~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 567 -----------------EDAMIRLDMSEYMEKHTVSKLIGSPPG----YVGY--NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -----------------ccceEEEEchhccccccHHHhcCCCCc----ccCc--CccchHHHHHHhCCCeEEEECChhhC
Confidence 1122222111 122333432100 0010 0112222 222379999999999
Q ss_pred CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----------C--------------------------C
Q 007444 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------G--------------------------V 280 (603)
Q Consensus 237 ~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------g--------------------------~ 280 (603)
++++++.|++++++|.++.. .|..+.+ .+.++|.|+|... | .
T Consensus 624 ~~~v~~~Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred CHHHHHHHHHHhccCceecC-CCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999986543 3555544 3789999999521 0 1
Q ss_pred ccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Q 007444 281 VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (603)
Q Consensus 281 L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a 360 (603)
|+|+|+.|++-+|.+. |.+.+...+|++..+. .+..++ ....-.+.++++++++|++.+
T Consensus 702 f~peflnRid~ii~F~-pL~~~~l~~Iv~~~l~-----------------~l~~rl---~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 702 FRPEFLNRLDEIIVFR-QLTKNDVWEIAEIMLK-----------------NLFKRL---NEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred cCHHHhccCCeEEEeC-CCCHHHHHHHHHHHHH-----------------HHHHHH---HHCCcEEEECHHHHHHHHHhc
Confidence 5688999998876666 8889988888875432 112222 222234789999999999986
Q ss_pred HcCCCCchhHHHHHH
Q 007444 361 LRGGCQGHRAELYAA 375 (603)
Q Consensus 361 ~~~~v~s~Ra~i~ll 375 (603)
.... .|.|..-.++
T Consensus 761 ~~~~-~GAR~l~r~i 774 (821)
T CHL00095 761 YNPL-YGARPLRRAI 774 (821)
T ss_pred CCCC-CChhhHHHHH
Confidence 5433 3566555444
No 168
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.3e-11 Score=136.02 Aligned_cols=229 Identities=18% Similarity=0.231 Sum_probs=138.9
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC-CCCCccc--
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWE-- 162 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~-~~~~~~~-- 162 (603)
.+++|..|++|+||++++..|.-+.-+....| +||+||+|+|||++|+.++..+ +|.. ......|
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l-----------~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI-----------NCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCCCCCCCCCCc
Confidence 46789999999999999998876555444555 8999999999999999999986 3432 1112233
Q ss_pred -ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 163 -DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 163 -~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
..|...- .. ....++.+..... .+.-|+...+. .....| ..+...|++|||++.|+.+.+
T Consensus 78 C~sC~~~~---~~-------~~~n~~~ld~~~~----~~vd~Ir~li~--~~~~~P---~~~~~KVvIIdea~~Ls~~a~ 138 (614)
T PRK14971 78 CESCVAFN---EQ-------RSYNIHELDAASN----NSVDDIRNLIE--QVRIPP---QIGKYKIYIIDEVHMLSQAAF 138 (614)
T ss_pred chHHHHHh---cC-------CCCceEEeccccc----CCHHHHHHHHH--HHhhCc---ccCCcEEEEEECcccCCHHHH
Confidence 3333311 00 1334555533210 11111111110 000011 123456999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
+.|+..|++- |...++|.+++ ....+-+.|.+|+.+. .+. +.+.++....+..
T Consensus 139 naLLK~LEep-------------p~~tifIL~tt-~~~kIl~tI~SRc~iv-~f~-~ls~~ei~~~L~~----------- 191 (614)
T PRK14971 139 NAFLKTLEEP-------------PSYAIFILATT-EKHKILPTILSRCQIF-DFN-RIQVADIVNHLQY----------- 191 (614)
T ss_pred HHHHHHHhCC-------------CCCeEEEEEeC-CchhchHHHHhhhhee-ecC-CCCHHHHHHHHHH-----------
Confidence 9999999974 22456666665 4567888999998664 776 4444433222221
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
+. . ...+.++++++.+|++.+ +. +.|..+..+.... .+.|.. |+.++|.+.
T Consensus 192 --------------ia--~--~egi~i~~~al~~La~~s---~g-dlr~al~~Lekl~---~y~~~~-It~~~V~~~ 242 (614)
T PRK14971 192 --------------VA--S--KEGITAEPEALNVIAQKA---DG-GMRDALSIFDQVV---SFTGGN-ITYKSVIEN 242 (614)
T ss_pred --------------HH--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---HhccCC-ccHHHHHHH
Confidence 10 1 125789999988888775 22 5687777764332 344443 666665443
No 169
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.8e-12 Score=136.98 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=116.3
Q ss_pred CCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
..-|.+|-|..++|.+|.-....| ...|||||||||||||.||.+++...
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------------- 725 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------------- 725 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----------------
Confidence 377899999999999994333222 35779999999999999999999865
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~ 234 (603)
+..|+.+-.....+.++|.- |.+ ...++.+| ..+|||+||++
T Consensus 726 -------------------------~~~fisvKGPElL~KyIGaS--Eq~--------vR~lF~rA~~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 726 -------------------------NLRFISVKGPELLSKYIGAS--EQN--------VRDLFERAQSAKPCILFFDEFD 770 (952)
T ss_pred -------------------------CeeEEEecCHHHHHHHhccc--HHH--------HHHHHHHhhccCCeEEEecccc
Confidence 56788887777778888852 121 22355544 67899999999
Q ss_pred cCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCH
Q 007444 235 LLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (603)
Q Consensus 235 ~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~ 301 (603)
.+. +.++|.||.-|+.-. |.. .+.++|+|. .+.-++++||+ ||+..|.-+. ++.
T Consensus 771 SiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl~-----GV~i~aaTs-RpdliDpALLRpGRlD~~v~C~~-P~~ 837 (952)
T KOG0735|consen 771 SIAPKRGHDSTGVTDRVVNQLLTELDGAE------GLD-----GVYILAATS-RPDLIDPALLRPGRLDKLVYCPL-PDE 837 (952)
T ss_pred ccCcccCCCCCCchHHHHHHHHHhhcccc------ccc-----eEEEEEecC-CccccCHhhcCCCccceeeeCCC-CCc
Confidence 873 578999999998433 221 345666666 56678889987 9999988874 588
Q ss_pred HHHHHHHHH
Q 007444 302 EDRVAAVGI 310 (603)
Q Consensus 302 e~r~eI~~~ 310 (603)
.+|.+|++.
T Consensus 838 ~eRl~il~~ 846 (952)
T KOG0735|consen 838 PERLEILQV 846 (952)
T ss_pred HHHHHHHHH
Confidence 899999874
No 170
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4e-11 Score=136.31 Aligned_cols=174 Identities=22% Similarity=0.183 Sum_probs=105.3
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
.+...++++..|++|+||+.++..|.-+..... ..++||+||+|||||++|+++++.+.-....... ..+..-
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~------~~~Cg~ 77 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT------PEPCGK 77 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC------CCCCcc
Confidence 455667889999999999999998865444332 3569999999999999999999987311000000 112223
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~ 241 (603)
|+.|...... ....++.+.... -.|.-++...+ ... .+.| ..+...|+||||++.|+.+.+
T Consensus 78 C~~C~~i~~g----------~h~D~~ei~~~~----~~~vd~IReii-~~a-~~~p---~~~~~KViIIDEad~Lt~~a~ 138 (620)
T PRK14948 78 CELCRAIAAG----------NALDVIEIDAAS----NTGVDNIRELI-ERA-QFAP---VQARWKVYVIDECHMLSTAAF 138 (620)
T ss_pred cHHHHHHhcC----------CCccEEEEeccc----cCCHHHHHHHH-HHH-hhCh---hcCCceEEEEECccccCHHHH
Confidence 5555442110 122344442210 11110111111 000 0111 123456999999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccccc
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~ 296 (603)
+.||..|++-. ..+++|.+++ +...+.+.|.+|+... .+.
T Consensus 139 naLLK~LEePp-------------~~tvfIL~t~-~~~~llpTIrSRc~~~-~f~ 178 (620)
T PRK14948 139 NALLKTLEEPP-------------PRVVFVLATT-DPQRVLPTIISRCQRF-DFR 178 (620)
T ss_pred HHHHHHHhcCC-------------cCeEEEEEeC-ChhhhhHHHHhheeEE-Eec
Confidence 99999999642 2456666666 4556778899998665 665
No 171
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=3.8e-11 Score=121.04 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=128.9
Q ss_pred CCCCCCcccccHHH-HHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 90 QFFPLAAVVGQDAI-KTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 90 ~~~~f~~IvGq~~~-k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
..++|+.+++...- ...+...+.......++|+|++|||||.|+.+++..+..
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~-------------------------- 67 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ-------------------------- 67 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--------------------------
Confidence 35678887665533 222222223333456999999999999999999876521
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCC--HHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISNLLL 245 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~--~~~~~~LL 245 (603)
.+...+.++.. ++.+.+ . ..+.. .+..+|+|||++.+. +..+..|+
T Consensus 68 -------------~~~~~~y~~~~----~~~~~~--~------------~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 68 -------------AGRSSAYLPLQ----AAAGRL--R------------DALEALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred -------------cCCcEEEEeHH----HhhhhH--H------------HHHHHHhcCCEEEEeCcccccCChHHHHHHH
Confidence 01112222211 111111 0 01111 123489999999885 45566777
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhh--cccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf--~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
..++.... ....+|.|+|..+. .+.++|.+|| ++.+.+. |++.+.+.+|++...
T Consensus 117 ~l~n~~~~------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~-~~~~e~~~~iL~~~a-------- 175 (233)
T PRK08727 117 DFHNRARA------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP-VLDDVARAAVLRERA-------- 175 (233)
T ss_pred HHHHHHHH------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec-CCCHHHHHHHHHHHH--------
Confidence 77665321 02346777774443 3469999998 5566776 668888888876421
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
.. ..+.++++++.+|++.+. .+.|..+.++...-+.+...++ .||.+.+++++.
T Consensus 176 -------------------~~--~~l~l~~e~~~~La~~~~----rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 176 -------------------QR--RGLALDEAAIDWLLTHGE----RELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred -------------------HH--cCCCCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 11 257899999999988753 3678898888877655555565 699999988764
No 172
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.1e-12 Score=130.67 Aligned_cols=218 Identities=21% Similarity=0.227 Sum_probs=146.4
Q ss_pred CCCCCCCcccccHHHHHHHHH----hhhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLL----GAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l----aav~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.++|++|-|.-...+++.- -.++| -..+++||||||||||.+|++++..+
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m--------------- 190 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM--------------- 190 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc---------------
Confidence 467899999999988888732 12233 13569999999999999999999876
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+..|+.+..+..++..+|.. .+.+++ .+..| ..+|||+||
T Consensus 191 ---------------------------g~nfl~v~ss~lv~kyiGEs--aRlIRe--------mf~yA~~~~pciifmde 233 (388)
T KOG0651|consen 191 ---------------------------GVNFLKVVSSALVDKYIGES--ARLIRD--------MFRYAREVIPCIIFMDE 233 (388)
T ss_pred ---------------------------CCceEEeeHhhhhhhhcccH--HHHHHH--------HHHHHhhhCceEEeehh
Confidence 67788888999999999962 111111 11222 348999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.. +..+|..|..+++.-. |... -.++-+|.|+| ++..|+++|++ |++..+.++.|
T Consensus 234 iDAigGRr~se~Ts~dreiqrTLMeLlnqmd------gfd~--l~rVk~ImatN-rpdtLdpaLlRpGRldrk~~iPlp- 303 (388)
T KOG0651|consen 234 IDAIGGRRFSEGTSSDREIQRTLMELLNQMD------GFDT--LHRVKTIMATN-RPDTLDPALLRPGRLDRKVEIPLP- 303 (388)
T ss_pred hhhhccEEeccccchhHHHHHHHHHHHHhhc------cchh--cccccEEEecC-CccccchhhcCCccccceeccCCc-
Confidence 9865 5678888888887432 2211 12677999999 88999999997 89999998865
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 300 ~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
+...|.+|++... +..-..-.+.++++-.+ ...+|+.. ..+..+-|-
T Consensus 304 ne~~r~~I~Kih~---------------------------~~i~~~Geid~eaivK~---~d~f~gad---~rn~~tEag 350 (388)
T KOG0651|consen 304 NEQARLGILKIHV---------------------------QPIDFHGEIDDEAILKL---VDGFNGAD---LRNVCTEAG 350 (388)
T ss_pred chhhceeeEeecc---------------------------ccccccccccHHHHHHH---HhccChHH---Hhhhccccc
Confidence 7777777654321 11112234555544333 33344432 224444455
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH
Q 007444 380 CLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~l 401 (603)
-.|.-+.+.+|..||...++.-
T Consensus 351 ~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 351 MFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred ccccchhhHHHhHHHHHHHHHH
Confidence 5666677778888887766553
No 173
>PRK06893 DNA replication initiation factor; Validated
Probab=99.32 E-value=5.3e-11 Score=119.69 Aligned_cols=207 Identities=13% Similarity=0.160 Sum_probs=123.3
Q ss_pred CCCCCCcccccHHHHHHHHH--hhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 90 QFFPLAAVVGQDAIKTALLL--GAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l--aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
+..+|++++|++....+..+ .........++|+||+|||||+|++++++.+-..
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~------------------------ 66 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN------------------------ 66 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc------------------------
Confidence 46889999977754433211 1111122347999999999999999999875210
Q ss_pred cccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCC--HHHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISNLL 244 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~--~~~~~~L 244 (603)
+ ....|+.+. ... .+.. ..+.. .+..+|+||||+.+. ...+..|
T Consensus 67 -------~------~~~~y~~~~--~~~--~~~~----------------~~~~~~~~~dlLilDDi~~~~~~~~~~~~l 113 (229)
T PRK06893 67 -------Q------RTAIYIPLS--KSQ--YFSP----------------AVLENLEQQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred -------C------CCeEEeeHH--Hhh--hhhH----------------HHHhhcccCCEEEEeChhhhcCChHHHHHH
Confidence 0 022233221 100 0000 01111 123599999999874 3444556
Q ss_pred HHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCC---ccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 245 L~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~---L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
+..++.... .| ..++|.|+|..+.. ..+.|..|+. ..+.+. +++.+.+.+|++....
T Consensus 114 ~~l~n~~~~----~~-------~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~-~pd~e~~~~iL~~~a~------ 175 (229)
T PRK06893 114 FDLFNRIKE----QG-------KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN-DLTDEQKIIVLQRNAY------ 175 (229)
T ss_pred HHHHHHHHH----cC-------CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC-CCCHHHHHHHHHHHHH------
Confidence 666654320 01 22344555533333 3389999875 566777 6688888888764211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHc-CCCCCcHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE-GREKVNVDDLKKA 398 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~-gr~~Vt~eDv~~A 398 (603)
...+.++++++.+|+..+. . +.|..+.++...- .+.+. ++ .||...++++
T Consensus 176 -----------------------~~~l~l~~~v~~~L~~~~~---~-d~r~l~~~l~~l~-~~~~~~~~-~it~~~v~~~ 226 (229)
T PRK06893 176 -----------------------QRGIELSDEVANFLLKRLD---R-DMHTLFDALDLLD-KASLQAQR-KLTIPFVKEI 226 (229)
T ss_pred -----------------------HcCCCCCHHHHHHHHHhcc---C-CHHHHHHHHHHHH-HHHHhcCC-CCCHHHHHHH
Confidence 1258899999999987753 2 5688888776554 34444 55 6999999887
Q ss_pred HH
Q 007444 399 VE 400 (603)
Q Consensus 399 ~~ 400 (603)
+.
T Consensus 227 L~ 228 (229)
T PRK06893 227 LG 228 (229)
T ss_pred hc
Confidence 63
No 174
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=8.8e-11 Score=127.13 Aligned_cols=242 Identities=19% Similarity=0.172 Sum_probs=142.9
Q ss_pred CCCCcccccHHHHHHHHHhh---hc-cCCCcEEEECCCCChHHHHHHHHHHhCCCCe-eeccccccCCCCCC-Ccccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGA---ID-REIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCP-DEWEDGL 165 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laa---v~-p~~~gVLL~GppGTGKT~lArala~~l~~~~-~~~~~~~n~~~~~~-~~~~~~~ 165 (603)
+....++|++.....|.... +. .....++|+|+||||||++++.+.+.+.... .+...++||..... ..+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 34567899998877774322 22 2235699999999999999999998764321 12233445532110 0000000
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCC----HHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD----EGI 240 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~----~~~ 240 (603)
...+. + ...+ ..+.+.+.++..+ ...+.. ...-||+|||++.+. .+.
T Consensus 107 ~~~l~----~------~~~~----~~~~~~~~~~~~~--------------~~~l~~~~~~~viviDE~d~l~~~~~~~~ 158 (394)
T PRK00411 107 ARQLF----G------HPPP----SSGLSFDELFDKI--------------AEYLDERDRVLIVALDDINYLFEKEGNDV 158 (394)
T ss_pred HHHhc----C------CCCC----CCCCCHHHHHHHH--------------HHHHHhcCCEEEEEECCHhHhhccCCchH
Confidence 00000 0 0000 0000001111100 001111 122488999999985 456
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhcc-cccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l-~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
+..|+..++... + .++.+|+++|... ..+.+.+..||.. .|.+. |++.++..+|+..+..
T Consensus 159 l~~l~~~~~~~~------~------~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~-py~~~e~~~il~~r~~---- 221 (394)
T PRK00411 159 LYSLLRAHEEYP------G------ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP-PYTADEIFDILKDRVE---- 221 (394)
T ss_pred HHHHHHhhhccC------C------CeEEEEEEECCcchhhhcCHHHHhcCCcceeecC-CCCHHHHHHHHHHHHH----
Confidence 666666655321 1 1467788887532 3467788888864 44554 7788888888664321
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
.......+++++++.+++.+..... ..|..+.+++.|..+|...|...|+.+||..
T Consensus 222 -----------------------~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~ 277 (394)
T PRK00411 222 -----------------------EGFYPGVVDDEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRK 277 (394)
T ss_pred -----------------------hhcccCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 1122345899999999988765322 5799999999999899889999999999999
Q ss_pred HHHHH
Q 007444 398 AVELV 402 (603)
Q Consensus 398 A~~lv 402 (603)
|+..+
T Consensus 278 a~~~~ 282 (394)
T PRK00411 278 AYEKS 282 (394)
T ss_pred HHHHH
Confidence 99876
No 175
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.31 E-value=2.7e-12 Score=116.21 Aligned_cols=115 Identities=30% Similarity=0.387 Sum_probs=81.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccc
Q 007444 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l 198 (603)
|||+||||||||++++.+++.+ +.+|+.+......+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------------------------------------------~~~~~~i~~~~~~~~~ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------------------------------------------GFPFIEIDGSELISSY 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------------------------------------------TSEEEEEETTHHHTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhc------------------------------------------cccccccccccccccc
Confidence 7999999999999999999987 3455555544433333
Q ss_pred cccccchhccccCcccccccchhcc----cCceEEecccccCCHHH-----------HHHHHHHHHcCceeEeeCCeeeE
Q 007444 199 IGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGI-----------SNLLLNVLTEGVNIVEREGISFK 263 (603)
Q Consensus 199 ~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l~~~~-----------~~~LL~~l~~g~~~v~r~G~s~~ 263 (603)
.+.. ++.+ ...+..+ ..+||||||++.+.... ++.|+..++.....
T Consensus 39 ~~~~--~~~i--------~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------- 99 (132)
T PF00004_consen 39 AGDS--EQKI--------RDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------- 99 (132)
T ss_dssp TTHH--HHHH--------HHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT---------
T ss_pred cccc--cccc--------ccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccc---------
Confidence 3320 1111 1122222 25899999999996664 88999999876521
Q ss_pred ecCCcEEEEEeCCCCCCccHHHH-hhhccccccc
Q 007444 264 HPCKPLLIATYNPEEGVVREHLL-DRIAINLSAD 296 (603)
Q Consensus 264 ~p~~~~lIattNp~eg~L~~~Ll-dRf~l~v~v~ 296 (603)
..++++|+|+| ....+++.|+ +||+..+.++
T Consensus 100 -~~~~~vI~ttn-~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 100 -NSRVIVIATTN-SPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSEEEEEEES-SGGGSCHHHHSTTSEEEEEE-
T ss_pred -cccceeEEeeC-ChhhCCHhHHhCCCcEEEEcC
Confidence 23589999999 5889999999 9999998764
No 176
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.4e-11 Score=127.25 Aligned_cols=225 Identities=18% Similarity=0.230 Sum_probs=135.3
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
....+++|..|++|+||+.++..+.-..-+... .++||+||+|+|||++|+++++.+.....- .+ +
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-------~~------~ 72 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD-------DP------N 72 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CC------C
Confidence 345578999999999999999988665544333 469999999999999999999886310000 00 0
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
.. ....++.+.... ..+.-++...+.. . ...| ..++..|++|||++.+....++
T Consensus 73 ~~-----------------~~~~~~~l~~~~----~~~~~~i~~l~~~-~-~~~p---~~~~~kiviIDE~~~l~~~~~~ 126 (367)
T PRK14970 73 ED-----------------FSFNIFELDAAS----NNSVDDIRNLIDQ-V-RIPP---QTGKYKIYIIDEVHMLSSAAFN 126 (367)
T ss_pred CC-----------------CCcceEEecccc----CCCHHHHHHHHHH-H-hhcc---ccCCcEEEEEeChhhcCHHHHH
Confidence 00 011222221110 0010011100000 0 0001 1234569999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|+..+++.. ...++|.++| ....+.+.+.+|+.. +.+. +++.++...++...
T Consensus 127 ~ll~~le~~~-------------~~~~~Il~~~-~~~kl~~~l~sr~~~-v~~~-~~~~~~l~~~l~~~----------- 179 (367)
T PRK14970 127 AFLKTLEEPP-------------AHAIFILATT-EKHKIIPTILSRCQI-FDFK-RITIKDIKEHLAGI----------- 179 (367)
T ss_pred HHHHHHhCCC-------------CceEEEEEeC-CcccCCHHHHhccee-EecC-CccHHHHHHHHHHH-----------
Confidence 9999887532 2345666666 456777889999865 4766 44444433332211
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
++ ...+.++++++++|+..+ +. +.|..+..+.... .+.+.. ||.+++++++.
T Consensus 180 ----------------~~--~~g~~i~~~al~~l~~~~---~g-dlr~~~~~lekl~---~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 180 ----------------AV--KEGIKFEDDALHIIAQKA---DG-ALRDALSIFDRVV---TFCGKN-ITRQAVTENLN 231 (367)
T ss_pred ----------------HH--HcCCCCCHHHHHHHHHhC---CC-CHHHHHHHHHHHH---HhcCCC-CCHHHHHHHhC
Confidence 11 125679999999998764 22 5687777765433 344554 99999886654
No 177
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.29 E-value=4.2e-11 Score=125.27 Aligned_cols=107 Identities=26% Similarity=0.349 Sum_probs=75.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-----------CCccHHHHhhhcccc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-----------GVVREHLLDRIAINL 293 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-----------g~L~~~LldRf~l~v 293 (603)
.|||||||+|.|+-+....|..+|+... -.++|.+||... .-++.+||||+-+.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII- 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLII- 343 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEE-
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEE-
Confidence 6899999999999999999999999765 347888888531 24678999999665
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
... |++.++..+|+..+.. -..|.++++++++|..++... |+|..++
T Consensus 344 ~t~-py~~~ei~~Il~iR~~-----------------------------~E~v~i~~~al~~L~~ig~~~---SLRYAiq 390 (398)
T PF06068_consen 344 RTK-PYSEEEIKQILKIRAK-----------------------------EEDVEISEDALDLLTKIGVET---SLRYAIQ 390 (398)
T ss_dssp EE-----HHHHHHHHHHHHH-----------------------------HCT--B-HHHHHHHHHHHHHS----HHHHHH
T ss_pred ECC-CCCHHHHHHHHHhhhh-----------------------------hhcCcCCHHHHHHHHHHhhhc---cHHHHHH
Confidence 555 8888888888775422 236899999999999998775 6799999
Q ss_pred HHHHHH
Q 007444 374 AARVAK 379 (603)
Q Consensus 374 llr~Ar 379 (603)
++..|.
T Consensus 391 Li~~a~ 396 (398)
T PF06068_consen 391 LITPAS 396 (398)
T ss_dssp CHHHHH
T ss_pred hhhhhh
Confidence 886664
No 178
>PRK06620 hypothetical protein; Validated
Probab=99.27 E-value=2.2e-10 Score=114.03 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=80.5
Q ss_pred ceEEecccccCCHHHHHHHHH-HHHcCceeEeeCCeeeEecCCcEEEEEeC-CCCCCccHHHHhhhc--ccccccCCCCH
Q 007444 226 GVLYIDEINLLDEGISNLLLN-VLTEGVNIVEREGISFKHPCKPLLIATYN-PEEGVVREHLLDRIA--INLSADLPMTF 301 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~-~l~~g~~~v~r~G~s~~~p~~~~lIattN-p~eg~L~~~LldRf~--l~v~v~~p~~~ 301 (603)
.+|+||||+.+....+-.++. +.+.|. .+||+++. |..-.+ ++|..||. +.+.+. |++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~---------------~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~-~pd~ 149 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK---------------YLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN-SPDD 149 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC---------------EEEEEcCCCccccch-HHHHHHHhCCceEeeC-CCCH
Confidence 589999999875433333333 334443 34555554 233346 89999997 345676 5677
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
+.+..++.... .. ..+.++++++++|+..+. .+.|..+.++....+.
T Consensus 150 ~~~~~~l~k~~---------------------------~~--~~l~l~~ev~~~L~~~~~----~d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 150 ELIKILIFKHF---------------------------SI--SSVTISRQIIDFLLVNLP----REYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHHH---------------------------HH--cCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHHH
Confidence 77766655321 11 257899999999988763 2578888888876655
Q ss_pred HHHcCCCCCcHHHHHHHH
Q 007444 382 AALEGREKVNVDDLKKAV 399 (603)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~ 399 (603)
+...++ .||.+.+++++
T Consensus 197 ~~~~~~-~it~~~~~~~l 213 (214)
T PRK06620 197 ALISKR-KITISLVKEVL 213 (214)
T ss_pred HHHcCC-CCCHHHHHHHh
Confidence 555554 69999988875
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2e-12 Score=138.35 Aligned_cols=132 Identities=29% Similarity=0.466 Sum_probs=92.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
-+|||||||||||||++||-|...|...+ ...| +.....
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNAre---------------------------------------PKIV--NGPeIL 294 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNARE---------------------------------------PKIV--NGPEIL 294 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCC---------------------------------------Cccc--CcHHHH
Confidence 46799999999999999999999985311 1111 222344
Q ss_pred ccccccccchhccccCcccccccchhcc-----------cCceEEecccccC-------------CHHHHHHHHHHHHcC
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA-----------HRGVLYIDEINLL-------------DEGISNLLLNVLTEG 251 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A-----------~~gIL~IDEi~~l-------------~~~~~~~LL~~l~~g 251 (603)
+.++|.- |..+ .-|++.| .-.|+++|||+.+ .+.++|+||.-|+ |
T Consensus 295 ~KYVGeS--E~Nv--------R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmD-G 363 (744)
T KOG0741|consen 295 NKYVGES--EENV--------RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMD-G 363 (744)
T ss_pred HHhhccc--HHHH--------HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcc-c
Confidence 5667742 1111 1233332 1239999999865 5789999999987 4
Q ss_pred ceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHHHHHHHHHHH
Q 007444 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
+-.+. +++|||-|| ...-++++||+ ||.+.+++.+| |...|.+|++..
T Consensus 364 VeqLN----------NILVIGMTN-R~DlIDEALLRPGRlEVqmEIsLP-DE~gRlQIl~IH 413 (744)
T KOG0741|consen 364 VEQLN----------NILVIGMTN-RKDLIDEALLRPGRLEVQMEISLP-DEKGRLQILKIH 413 (744)
T ss_pred HHhhh----------cEEEEeccC-chhhHHHHhcCCCceEEEEEEeCC-CccCceEEEEhh
Confidence 43222 789999999 55566777776 99999999976 889999998754
No 180
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=3.1e-11 Score=142.23 Aligned_cols=208 Identities=17% Similarity=0.189 Sum_probs=130.5
Q ss_pred CCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
.-.|+.|+|++..++.+.-........+++|+||||||||++|++|+..+....
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~-------------------------- 228 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRD-------------------------- 228 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCC--------------------------
Confidence 345788999999888885544444567899999999999999999998763210
Q ss_pred ccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhc---ccCceEEecccccCCH-------
Q 007444 171 YDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLLDE------- 238 (603)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDEi~~l~~------- 238 (603)
.+....+.+|+.+..+... ..+.|.+ +. .. ..++.. ..+.|||||||+.+-.
T Consensus 229 ------vp~~l~~~~i~~l~~~~l~ag~~~~ge~--e~-------rl-~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~ 292 (821)
T CHL00095 229 ------VPDILEDKLVITLDIGLLLAGTKYRGEF--EE-------RL-KRIFDEIQENNNIILVIDEVHTLIGAGAAEGA 292 (821)
T ss_pred ------CChhhcCCeEEEeeHHHHhccCCCccHH--HH-------HH-HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc
Confidence 0001124556665443211 1222211 10 00 123322 2346999999997632
Q ss_pred -HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 239 -~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
++.+.|...+..|. +.+||+||+++. +.+++|..||... .+.. ++.++...|++....
T Consensus 293 ~~~a~lLkp~l~rg~---------------l~~IgaTt~~ey~~~ie~D~aL~rRf~~I-~v~e-p~~~e~~aILr~l~~ 355 (821)
T CHL00095 293 IDAANILKPALARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQPV-YVGE-PSVEETIEILFGLRS 355 (821)
T ss_pred ccHHHHhHHHHhCCC---------------cEEEEeCCHHHHHHHHhcCHHHHhcceEE-ecCC-CCHHHHHHHHHHHHH
Confidence 35677777877764 578999998774 4679999999874 7774 477777777764432
Q ss_pred -HHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc
Q 007444 314 -FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR 362 (603)
Q Consensus 314 -f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~ 362 (603)
|+... . ..-..+.+..-+..+..+.+.-.+++.+++.|-+.|..
T Consensus 356 ~~e~~~----~-v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 356 RYEKHH----N-LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHc----C-CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 22111 1 11223344444555666777777888888877776654
No 181
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-10 Score=121.38 Aligned_cols=240 Identities=18% Similarity=0.150 Sum_probs=134.5
Q ss_pred CCCCCCcccccHHHHHHHHHhhh---cc-----CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 90 QFFPLAAVVGQDAIKTALLLGAI---DR-----EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laav---~p-----~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
..-||.+||-+..+.+-+.-.++ |- -.++||+|||||||||++||-|+...+
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG-------------------- 409 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG-------------------- 409 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC--------------------
Confidence 45779999999999888832222 21 135699999999999999999998653
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCc-eEEecccccC-
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRG-VLYIDEINLL- 236 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~g-IL~IDEi~~l- 236 (603)
+....+.|+ |+.---..+.... .-+|..| ++| +|||||.+.+
T Consensus 410 -------------------------------lDYA~mTGG-DVAPlG~qaVTki-H~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 410 -------------------------------LDYAIMTGG-DVAPLGAQAVTKI-HKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred -------------------------------CceehhcCC-CccccchHHHHHH-HHHHHHHhhcccceEEEehhhHHHH
Confidence 111111121 0000000000000 1122222 233 6899999754
Q ss_pred --------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 237 --------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 237 --------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
+...-..|..+|= |.|. ...+|+|+.+|| .+|.|+.++-|||+-.|++++| -.++|..++
T Consensus 457 ceRnktymSEaqRsaLNAlLf-------RTGd---qSrdivLvlAtN-rpgdlDsAV~DRide~veFpLP-GeEERfkll 524 (630)
T KOG0742|consen 457 CERNKTYMSEAQRSALNALLF-------RTGD---QSRDIVLVLATN-RPGDLDSAVNDRIDEVVEFPLP-GEEERFKLL 524 (630)
T ss_pred HHhchhhhcHHHHHHHHHHHH-------Hhcc---cccceEEEeccC-CccchhHHHHhhhhheeecCCC-ChHHHHHHH
Confidence 4444444433331 2222 123789999999 8999999999999999999976 788899888
Q ss_pred HHHHH-HHhhhHHH--hhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH
Q 007444 309 GIATQ-FQERSNEV--FKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (603)
Q Consensus 309 ~~~~~-f~~~~~~~--~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal 384 (603)
.+.+. |...++.. ...|. .... .....+.|.... -..+.+.+......|.|..-.++--..+.+.-
T Consensus 525 ~lYlnkyi~~~~~~~~~~~~~-------~lfk---k~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYg 594 (630)
T KOG0742|consen 525 NLYLNKYILKPATSGKPGKWS-------HLFK---KESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYG 594 (630)
T ss_pred HHHHHHHhcCcCCCCCCchhh-------HHHh---hhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc
Confidence 76432 21111100 01111 1111 111234555533 33455566667777889877766333333222
Q ss_pred cCCCCCcHHHHHHHHHHHcC
Q 007444 385 EGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 385 ~gr~~Vt~eDv~~A~~lvl~ 404 (603)
.....++..-+++.+.+...
T Consensus 595 sedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 595 SEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 22334555566777776654
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=4.9e-11 Score=140.61 Aligned_cols=213 Identities=18% Similarity=0.200 Sum_probs=133.7
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++-.++.|+|+++..+.+.-........+++|+||||||||+++++|+..+..-.
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~------------------------ 227 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGE------------------------ 227 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCC------------------------
Confidence 45667899999998877775433334567899999999999999999998864210
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhc---c-cCceEEecccccCCH----
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---A-HRGVLYIDEINLLDE---- 238 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~---A-~~gIL~IDEi~~l~~---- 238 (603)
.+....+.+++.+..+... ..+.|.+ +..+ ..++.. . ...|||||||+.+..
T Consensus 228 --------vp~~l~~~~~~~l~l~~l~ag~~~~g~~--e~~l--------k~~~~~~~~~~~~~ILfIDEih~l~~~~~~ 289 (857)
T PRK10865 228 --------VPEGLKGRRVLALDMGALVAGAKYRGEF--EERL--------KGVLNDLAKQEGNVILFIDELHTMVGAGKA 289 (857)
T ss_pred --------CchhhCCCEEEEEehhhhhhccchhhhh--HHHH--------HHHHHHHHHcCCCeEEEEecHHHhccCCCC
Confidence 0001124455554443321 2233321 1111 112222 1 245999999999852
Q ss_pred ----HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 239 ----~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
+.++.|...++.|. +.+||+|++++. +++++|.+||.. |.+..| +.+++..|++.
T Consensus 290 ~~~~d~~~~lkp~l~~g~---------------l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP-~~~~~~~iL~~ 352 (857)
T PRK10865 290 DGAMDAGNMLKPALARGE---------------LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEP-SVEDTIAILRG 352 (857)
T ss_pred ccchhHHHHhcchhhcCC---------------CeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCC-CHHHHHHHHHH
Confidence 36788888887764 679999998885 579999999985 467755 78888888764
Q ss_pred HHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC
Q 007444 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG 364 (603)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~ 364 (603)
.... .+.+. ......+.+...+..+..+...-.+++.++..+-..|....
T Consensus 353 l~~~---~e~~~-~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~r 402 (857)
T PRK10865 353 LKER---YELHH-HVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIR 402 (857)
T ss_pred Hhhh---hccCC-CCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccc
Confidence 3221 11110 11112234444445556666777899999887777665443
No 183
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.25 E-value=1e-11 Score=119.28 Aligned_cols=116 Identities=27% Similarity=0.387 Sum_probs=77.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC-CCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP-PIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~-~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
.+.+||.||+|+|||.+|++|+..+. . ...+++.+..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~---------------------------------------~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVG---------------------------------------SERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-S---------------------------------------SCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccC---------------------------------------CccchHHHhhhcc
Confidence 35799999999999999999999984 1 1334444433221
Q ss_pred cccccccccchhccccCcccccccchhcccCceEEecccccCCH-----------HHHHHHHHHHHcCceeEeeCCeeeE
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFK 263 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~-----------~~~~~LL~~l~~g~~~v~r~G~s~~ 263 (603)
.+ .-|.+..+. ......+|....+++||||||||+++.+ .+++.||.++++|.+.- ..|..+.
T Consensus 44 ~~----~~~~~~~~~-~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d-~~g~~vd 117 (171)
T PF07724_consen 44 SE----GDDVESSVS-KLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTD-SYGRTVD 117 (171)
T ss_dssp CS----HHHCSCHCH-HHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEE-TTCCEEE
T ss_pred cc----cchHHhhhh-hhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceec-ccceEEE
Confidence 11 001011000 0011234566666778999999999999 99999999999998653 3343333
Q ss_pred ecCCcEEEEEeCCC
Q 007444 264 HPCKPLLIATYNPE 277 (603)
Q Consensus 264 ~p~~~~lIattNp~ 277 (603)
. .+.++|+|+|-.
T Consensus 118 ~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 118 T-SNIIFIMTSNFG 130 (171)
T ss_dssp G-TTEEEEEEESSS
T ss_pred e-CCceEEEecccc
Confidence 3 379999999963
No 184
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.6e-11 Score=131.35 Aligned_cols=199 Identities=22% Similarity=0.311 Sum_probs=128.4
Q ss_pred cccccHHHHHHHH-Hhhh---ccCCCc--EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 96 AVVGQDAIKTALL-LGAI---DREIGG--IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 96 ~IvGq~~~k~aL~-laav---~p~~~g--VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
+..|.+++|..++ ..+| .....| +.|+||||+|||+++|.||..|.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn---------------------------- 463 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN---------------------------- 463 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC----------------------------
Confidence 4678888888773 3343 222222 88999999999999999999984
Q ss_pred cccccccccccccCCCeEEcCCC--CccccccccccchhccccCcccccccchhcc------cCceEEecccccCCHH--
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEG-- 239 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~--~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A------~~gIL~IDEi~~l~~~-- 239 (603)
..|+.++.+ ....++-|+- --+-| .-||.+.++ ++.+++||||+.+...
T Consensus 464 --------------RkFfRfSvGG~tDvAeIkGHR----RTYVG---AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~q 522 (906)
T KOG2004|consen 464 --------------RKFFRFSVGGMTDVAEIKGHR----RTYVG---AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQ 522 (906)
T ss_pred --------------CceEEEeccccccHHhhcccc----eeeec---cCChHHHHHHHhhCCCCceEEeehhhhhCCCCC
Confidence 456665443 2333444431 00111 236776655 5679999999999652
Q ss_pred --HHHHHHHHHHcCcee-EeeCCeeeEec---CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 240 --ISNLLLNVLTEGVNI-VEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 240 --~~~~LL~~l~~g~~~-v~r~G~s~~~p---~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
-..+||.+|+-..|. +... ...+| .++++|+|.| .-..++++|+||+.++ ++.. +..++...|.+..+-
T Consensus 523 GDPasALLElLDPEQNanFlDH--YLdVp~DLSkVLFicTAN-~idtIP~pLlDRMEvI-elsG-Yv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 523 GDPASALLELLDPEQNANFLDH--YLDVPVDLSKVLFICTAN-VIDTIPPPLLDRMEVI-ELSG-YVAEEKVKIAERYLI 597 (906)
T ss_pred CChHHHHHHhcChhhccchhhh--ccccccchhheEEEEecc-ccccCChhhhhhhhee-eccC-ccHHHHHHHHHHhhh
Confidence 357899988754432 1100 01122 2678999999 7888999999999988 8873 788888888765321
Q ss_pred HHhhhHHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHH-HHHHcCCCCch
Q 007444 314 FQERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLV-MEALRGGCQGH 368 (603)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~-~~a~~~~v~s~ 368 (603)
- +......+ -.+|.|+++++..|+ .||.+.|+.++
T Consensus 598 p--------------------~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnL 634 (906)
T KOG2004|consen 598 P--------------------QALKDCGLKPEQVKISDDALLALIERYCREAGVRNL 634 (906)
T ss_pred h--------------------HHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHH
Confidence 1 11111111 235789998886554 57888887443
No 185
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.24 E-value=6.4e-11 Score=130.69 Aligned_cols=221 Identities=17% Similarity=0.254 Sum_probs=134.4
Q ss_pred CCCCCCccc-ccHH--HHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 90 QFFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 90 ~~~~f~~Iv-Gq~~--~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
+.++|+.++ |... +..++...+-+|+ ..+++|+|++|||||+|+++++..+....
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-------------------- 176 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-------------------- 176 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC--------------------
Confidence 567899854 5432 3333333233443 35699999999999999999998763100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCCH--HHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~--~~~ 241 (603)
....++.++.......+++.+ ..+.. .+. ..+. +..+|+||||+.+.. ..+
T Consensus 177 -----------------~~~~v~yi~~~~~~~~~~~~~------~~~~~~~~~-~~~~--~~dlLiiDDi~~l~~~~~~~ 230 (450)
T PRK00149 177 -----------------PNAKVVYVTSEKFTNDFVNAL------RNNTMEEFK-EKYR--SVDVLLIDDIQFLAGKERTQ 230 (450)
T ss_pred -----------------CCCeEEEEEHHHHHHHHHHHH------HcCcHHHHH-HHHh--cCCEEEEehhhhhcCCHHHH
Confidence 012233333322222333322 11100 011 0111 235999999998843 345
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
..|+..++.-. + .| ..++|+ +|..+. .+.+.|.+||. +.+.+. |++.+.|.+|++....
T Consensus 231 ~~l~~~~n~l~---~-~~-------~~iiit-s~~~p~~l~~l~~~l~SRl~~gl~v~i~-~pd~~~r~~il~~~~~--- 294 (450)
T PRK00149 231 EEFFHTFNALH---E-AG-------KQIVLT-SDRPPKELPGLEERLRSRFEWGLTVDIE-PPDLETRIAILKKKAE--- 294 (450)
T ss_pred HHHHHHHHHHH---H-CC-------CcEEEE-CCCCHHHHHHHHHHHHhHhcCCeeEEec-CCCHHHHHHHHHHHHH---
Confidence 56666554321 0 01 123444 443332 37789999995 677887 6799999988774311
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
...+.++++++++|++.+ . .+.|.++.++....+.|...++ .||.+.++
T Consensus 295 --------------------------~~~~~l~~e~l~~ia~~~---~-~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~ 343 (450)
T PRK00149 295 --------------------------EEGIDLPDEVLEFIAKNI---T-SNVRELEGALNRLIAYASLTGK-PITLELAK 343 (450)
T ss_pred --------------------------HcCCCCCHHHHHHHHcCc---C-CCHHHHHHHHHHHHHHHHhhCC-CCCHHHHH
Confidence 125789999999987754 2 2579888888888888877776 49999999
Q ss_pred HHHHHHc
Q 007444 397 KAVELVI 403 (603)
Q Consensus 397 ~A~~lvl 403 (603)
+++...+
T Consensus 344 ~~l~~~~ 350 (450)
T PRK00149 344 EALKDLL 350 (450)
T ss_pred HHHHHhh
Confidence 9988654
No 186
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.24 E-value=5.3e-11 Score=140.64 Aligned_cols=211 Identities=21% Similarity=0.240 Sum_probs=131.5
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++-.++.++|+++..+.+..........+++|+||||||||+++++|+..+..-.+ |
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~------------p---------- 224 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDV------------P---------- 224 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCC------------c----------
Confidence 356678899999998887765444456788999999999999999999987642100 0
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcc----cCceEEecccccCCH----
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDE---- 238 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l~~---- 238 (603)
....+.+++.+..+... ..+.|.+ ++.+ ..++... .+.|||||||+.+..
T Consensus 225 ----------~~l~~~~~~~l~~~~l~a~~~~~g~~--e~~l--------~~~l~~~~~~~~~~ILfIDEih~l~~~g~~ 284 (852)
T TIGR03346 225 ----------ESLKNKRLLALDMGALIAGAKYRGEF--EERL--------KAVLNEVTKSEGQIILFIDELHTLVGAGKA 284 (852)
T ss_pred ----------hhhcCCeEEEeeHHHHhhcchhhhhH--HHHH--------HHHHHHHHhcCCCeEEEeccHHHhhcCCCC
Confidence 00113445544332211 1222211 1111 1233222 246999999998842
Q ss_pred ----HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 239 ----~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
+..+.|...++.|. +.+||+||+++. +++++|.+||.. |.+..| +.+++..|++.
T Consensus 285 ~~~~d~~~~Lk~~l~~g~---------------i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p-~~~~~~~iL~~ 347 (852)
T TIGR03346 285 EGAMDAGNMLKPALARGE---------------LHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEP-TVEDTISILRG 347 (852)
T ss_pred cchhHHHHHhchhhhcCc---------------eEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCC-CHHHHHHHHHH
Confidence 35666766666553 578999997764 579999999986 478755 78888888764
Q ss_pred HHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc
Q 007444 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR 362 (603)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~ 362 (603)
...... .+ .........+..-+..+..+...-.+++.+++.|-+.|..
T Consensus 348 ~~~~~e---~~-~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 348 LKERYE---VH-HGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HHHHhc---cc-cCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 322111 00 0111223455555666666777777888888877776654
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.23 E-value=6.1e-11 Score=107.81 Aligned_cols=149 Identities=26% Similarity=0.241 Sum_probs=93.9
Q ss_pred cccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 007444 98 VGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (603)
Q Consensus 98 vGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (603)
+|++..+..+......+...+++|+|++|||||++++.++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~----------------------------------- 45 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR----------------------------------- 45 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-----------------------------------
Confidence 367777787866665555678999999999999999999988731
Q ss_pred cccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEee
Q 007444 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (603)
Q Consensus 178 ~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r 257 (603)
.+.+++.+................. .............+.++|+|||++.++......++..+.......
T Consensus 46 ----~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-- 115 (151)
T cd00009 46 ----PGAPFLYLNASDLLEGLVVAELFGH----FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-- 115 (151)
T ss_pred ----CCCCeEEEehhhhhhhhHHHHHhhh----hhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee--
Confidence 0223333322221111111100000 000011122233456899999999998888889999888765321
Q ss_pred CCeeeEecCCcEEEEEeCCCCC-CccHHHHhhhccccccc
Q 007444 258 EGISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSAD 296 (603)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg-~L~~~LldRf~l~v~v~ 296 (603)
..+.++.+|+++|+... .+...+.+||+..+.+.
T Consensus 116 -----~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 116 -----IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred -----ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 12346788999986654 77889999998766553
No 188
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-10 Score=122.11 Aligned_cols=206 Identities=19% Similarity=0.267 Sum_probs=131.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC-Ccc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTE 195 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-~~~ 195 (603)
.+|||.||+|+|||.||+.||..+ +.||+.-.+. +|.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------------------------------------------dVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------------------------------------------DVPFAICDCTTLTQ 264 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------------------------------------------CCCeEEecccchhh
Confidence 349999999999999999999987 6777766544 566
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCC--------------HHHHHHHHHHHHcCceeEeeCCe-
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--------------EGISNLLLNVLTEGVNIVEREGI- 260 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~- 260 (603)
..++|. |+|..+..= .....+-+++|..||+||||++.+. ..+|..||.+++.-.+.|..-|.
T Consensus 265 AGYVGe-DVEsvi~KL-l~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~ 342 (564)
T KOG0745|consen 265 AGYVGE-DVESVIQKL-LQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSR 342 (564)
T ss_pred cccccc-cHHHHHHHH-HHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCC
Confidence 778885 555443211 1112345677889999999999873 47899999999987777732232
Q ss_pred ------eeEecC-CcEEEEEeCC---C--------C---------------------------------------C----
Q 007444 261 ------SFKHPC-KPLLIATYNP---E--------E---------------------------------------G---- 279 (603)
Q Consensus 261 ------s~~~p~-~~~lIattNp---~--------e---------------------------------------g---- 279 (603)
.+.+.. ++++|+.--. + + +
T Consensus 343 ~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLis 422 (564)
T KOG0745|consen 343 RKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLIS 422 (564)
T ss_pred CCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhh
Confidence 222222 3333332110 0 0 0
Q ss_pred -CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHH
Q 007444 280 -VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLV 357 (603)
Q Consensus 280 -~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~ 357 (603)
-+-|.|.-||.+.|.+. +.+.+....|+- .|. ..|..+....... .-...+++++++.++
T Consensus 423 fGmIPEfVGRfPVlVplh-~L~~~~Lv~VLt-------EPk----------naL~~Qyk~lf~~~nV~L~fTe~Al~~IA 484 (564)
T KOG0745|consen 423 FGMIPEFVGRFPVLVPLH-SLDEDQLVRVLT-------EPK----------NALGKQYKKLFGMDNVELHFTEKALEAIA 484 (564)
T ss_pred hcCcHHHhcccceEeecc-ccCHHHHHHHHh-------cch----------hhHHHHHHHHhccCCeeEEecHHHHHHHH
Confidence 13367777888888777 566666555542 111 1222222221111 113469999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHHc
Q 007444 358 MEALRGGCQGHRAELYAARVAKCLAALE 385 (603)
Q Consensus 358 ~~a~~~~v~s~Ra~i~llr~Ara~Aal~ 385 (603)
+++...+. +.|++..+++.+-.-|.++
T Consensus 485 q~Al~r~T-GARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 485 QLALKRKT-GARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHhhcc-chHHHHHHHHHHHhhhccc
Confidence 99998877 7888888887666555544
No 189
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=7.7e-11 Score=127.22 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=101.9
Q ss_pred CCCcccccHHHHHHHHHhhhccC----------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC--CCCc
Q 007444 93 PLAAVVGQDAIKTALLLGAIDRE----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--CPDE 160 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav~p~----------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~--~~~~ 160 (603)
.|++|+||+.++..|.-+...+. .+.+||+||+|+|||++|+.++..+ +|... .+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l-----------~c~~~~~~~Cg 71 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL-----------QCTDPDEPGCG 71 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------CCCCCCCCCCC
Confidence 58899999999999865554432 3449999999999999999999876 45321 1222
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
-|..|...... .+..+..+.... .-++.-++. .+.... ...| ..++..|+||||+++++...
T Consensus 72 ~C~~C~~~~~~----------~hpD~~~i~~~~---~~i~i~~iR-~l~~~~-~~~p---~~~~~kViiIDead~m~~~a 133 (394)
T PRK07940 72 ECRACRTVLAG----------THPDVRVVAPEG---LSIGVDEVR-ELVTIA-ARRP---STGRWRIVVIEDADRLTERA 133 (394)
T ss_pred CCHHHHHHhcC----------CCCCEEEecccc---ccCCHHHHH-HHHHHH-HhCc---ccCCcEEEEEechhhcCHHH
Confidence 34444432210 122232222211 111111111 111000 0111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
+|.||..|++.. +..++|++|+| ...+.+.+++|+-. +.+. |++.++..+.+
T Consensus 134 anaLLk~LEep~------------~~~~fIL~a~~--~~~llpTIrSRc~~-i~f~-~~~~~~i~~~L 185 (394)
T PRK07940 134 ANALLKAVEEPP------------PRTVWLLCAPS--PEDVLPTIRSRCRH-VALR-TPSVEAVAEVL 185 (394)
T ss_pred HHHHHHHhhcCC------------CCCeEEEEECC--hHHChHHHHhhCeE-EECC-CCCHHHHHHHH
Confidence 999999998743 11234555555 56788999999854 4776 45666544443
No 190
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.20 E-value=1.4e-10 Score=126.20 Aligned_cols=221 Identities=18% Similarity=0.252 Sum_probs=132.2
Q ss_pred CCCCCCc-ccccHH--HHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 90 QFFPLAA-VVGQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 90 ~~~~f~~-IvGq~~--~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
..++|+. ++|.+. +..++...+-+|+ ..+++|+|++|||||+|+++++..+....
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-------------------- 164 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-------------------- 164 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC--------------------
Confidence 4688999 557553 2323322223443 24699999999999999999998763100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCCH--HHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~--~~~ 241 (603)
....++.++.......++..+ ..+.. .+. ..+. +..+|+||||+.+.. ..+
T Consensus 165 -----------------~~~~v~yi~~~~~~~~~~~~~------~~~~~~~~~-~~~~--~~dlLiiDDi~~l~~~~~~~ 218 (405)
T TIGR00362 165 -----------------PNAKVVYVSSEKFTNDFVNAL------RNNKMEEFK-EKYR--SVDLLLIDDIQFLAGKERTQ 218 (405)
T ss_pred -----------------CCCcEEEEEHHHHHHHHHHHH------HcCCHHHHH-HHHH--hCCEEEEehhhhhcCCHHHH
Confidence 022333333222222222221 11110 011 1111 235999999998753 355
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---CCccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
..|+..++.-. + .| ..+|.|+|..+ ..+.+.|.+||. +.|.+. |++.+.|.+|+.....
T Consensus 219 ~~l~~~~n~~~---~-~~--------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~-~pd~~~r~~il~~~~~--- 282 (405)
T TIGR00362 219 EEFFHTFNALH---E-NG--------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE-PPDLETRLAILQKKAE--- 282 (405)
T ss_pred HHHHHHHHHHH---H-CC--------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC-CCCHHHHHHHHHHHHH---
Confidence 66666665321 0 01 12344444332 346788999995 567777 6799999888764211
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
. ..+.++++++++|++.. .. +.|.+..++....+.|...++ .||.+.++
T Consensus 283 ------------------------~--~~~~l~~e~l~~ia~~~-~~---~~r~l~~~l~~l~~~a~~~~~-~it~~~~~ 331 (405)
T TIGR00362 283 ------------------------E--EGLELPDEVLEFIAKNI-RS---NVRELEGALNRLLAYASLTGK-PITLELAK 331 (405)
T ss_pred ------------------------H--cCCCCCHHHHHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 1 25789999999998654 22 458888777777777777775 59999999
Q ss_pred HHHHHHc
Q 007444 397 KAVELVI 403 (603)
Q Consensus 397 ~A~~lvl 403 (603)
+++...+
T Consensus 332 ~~L~~~~ 338 (405)
T TIGR00362 332 EALKDLL 338 (405)
T ss_pred HHHHHhc
Confidence 9887643
No 191
>PRK09087 hypothetical protein; Validated
Probab=99.19 E-value=1.2e-09 Score=109.55 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=85.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC-CCCCC-ccHHHHhhhc--ccccccCCCC
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN-PEEGV-VREHLLDRIA--INLSADLPMT 300 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN-p~eg~-L~~~LldRf~--l~v~v~~p~~ 300 (603)
.++|+||+++.++. .+..|+..++.-. + .| ..+||+++. |.+.. ..++|..||. +.+++. |++
T Consensus 88 ~~~l~iDDi~~~~~-~~~~lf~l~n~~~---~-~g-------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~-~pd 154 (226)
T PRK09087 88 EGPVLIEDIDAGGF-DETGLFHLINSVR---Q-AG-------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG-EPD 154 (226)
T ss_pred cCeEEEECCCCCCC-CHHHHHHHHHHHH---h-CC-------CeEEEECCCChHHhccccccHHHHHhCCceeecC-CCC
Confidence 36899999998742 2344555443211 0 01 124444433 22233 3688999994 666777 668
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 007444 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (603)
Q Consensus 301 ~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara 380 (603)
.+.+.+|+..... . ..+.++++++++|+..+. .+.|..+.++.....
T Consensus 155 ~e~~~~iL~~~~~---------------------------~--~~~~l~~ev~~~La~~~~----r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 155 DALLSQVIFKLFA---------------------------D--RQLYVDPHVVYYLVSRME----RSLFAAQTIVDRLDR 201 (226)
T ss_pred HHHHHHHHHHHHH---------------------------H--cCCCCCHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Confidence 8888888764311 1 257899999999998865 257888877766665
Q ss_pred HHHHcCCCCCcHHHHHHHHHHH
Q 007444 381 LAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 381 ~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
.+...++ .||...+++++..+
T Consensus 202 ~~~~~~~-~it~~~~~~~l~~~ 222 (226)
T PRK09087 202 LALERKS-RITRALAAEVLNEM 222 (226)
T ss_pred HHHHhCC-CCCHHHHHHHHHhh
Confidence 6666665 59999999988753
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=1.3e-10 Score=113.68 Aligned_cols=219 Identities=18% Similarity=0.167 Sum_probs=140.2
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
+.++..+++|.-+.+|||.++.+..|.+-+-.....+++|.|||||||||-+.+|++.|-.-.+
T Consensus 14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~---------------- 77 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY---------------- 77 (333)
T ss_pred cchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh----------------
Confidence 3457778999999999999999999976666555678999999999999999999988632000
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccch-hccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVE-ESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~-~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.- -.+.+++++++-+..+-=. +.....+....||- ..|+++||.+.+....
T Consensus 78 ---------------------ke--~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~gr-----hKIiILDEADSMT~gA 129 (333)
T KOG0991|consen 78 ---------------------KE--AVLELNASDERGIDVVRNKIKMFAQKKVTLPPGR-----HKIIILDEADSMTAGA 129 (333)
T ss_pred ---------------------hh--HhhhccCccccccHHHHHHHHHHHHhhccCCCCc-----eeEEEeeccchhhhHH
Confidence 00 0134556666644432000 01111111222333 3599999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
|.+|.+.|+-..+ .++| +.++| ....+-+++-+|+++. ...--.+ .+|+.+...
T Consensus 130 QQAlRRtMEiyS~-----------ttRF--alaCN-~s~KIiEPIQSRCAiL-Rysklsd----~qiL~Rl~~------- 183 (333)
T KOG0991|consen 130 QQALRRTMEIYSN-----------TTRF--ALACN-QSEKIIEPIQSRCAIL-RYSKLSD----QQILKRLLE------- 183 (333)
T ss_pred HHHHHHHHHHHcc-----------cchh--hhhhc-chhhhhhhHHhhhHhh-hhcccCH----HHHHHHHHH-------
Confidence 9999999986542 1244 44566 4445567788887765 2221111 123332211
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
.-+ ...|.++++.++.++..+. . .+|..++.++ +-.+|-..|+.|.|-.+
T Consensus 184 ------------------v~k-~Ekv~yt~dgLeaiifta~---G-DMRQalNnLQ-----st~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 184 ------------------VAK-AEKVNYTDDGLEAIIFTAQ---G-DMRQALNNLQ-----STVNGFGLVNQENVFKV 233 (333)
T ss_pred ------------------HHH-HhCCCCCcchHHHhhhhcc---c-hHHHHHHHHH-----HHhccccccchhhhhhc
Confidence 111 2258899999998877653 2 4799988873 34567788888877654
No 193
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.8e-10 Score=125.02 Aligned_cols=266 Identities=23% Similarity=0.244 Sum_probs=174.4
Q ss_pred CCCCCCCcccccHHHHHHHHHh------hhccCCCcEEEEC----CCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG------AIDREIGGIAISG----RRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la------av~p~~~gVLL~G----ppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
..+-+|.++.++.....+.... .+.+-.-++.+++ .+|.+++..++.+-....-..... + ..+
T Consensus 98 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~---~----~~~ 170 (647)
T COG1067 98 GRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSA---V----SVP 170 (647)
T ss_pred cCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchh---h----hhh
Confidence 3567788899988766665433 3333345688888 999999999876655432110000 0 000
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccC------cccccccchhcccCceEEecc
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTG------TTVFQPGLLAEAHRGVLYIDE 232 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g------~~~~~~Gll~~A~~gIL~IDE 232 (603)
+.+.+. ......||+. ..+...+.|+|.+ +...+.| ....+||.+.+||+|||||||
T Consensus 171 ~~~~~~--------------~~~~~~p~v~-a~~~~~~~LlG~V--r~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIde 233 (647)
T COG1067 171 KNFVEL--------------SPLDGAPVVF-ATGAIADQLLGSV--RHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDE 233 (647)
T ss_pred hhhhhh--------------ccccCCcEEe-cCCCChhhcceeE--EEcCCCCccCCCCcccccCcccccccCcEEEEEh
Confidence 000000 0012455554 5567788999975 4555544 567789999999999999999
Q ss_pred cccCCHHHHHHHHHHHHcCceeEe-----eCCee---eEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccC--C
Q 007444 233 INLLDEGISNLLLNVLTEGVNIVE-----REGIS---FKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADL--P 298 (603)
Q Consensus 233 i~~l~~~~~~~LL~~l~~g~~~v~-----r~G~s---~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~--p 298 (603)
++.|....++.+|..|.+++..+. ..|.. -.+|++|.+|+..|++. +.+.+.+++=|+..+++.. |
T Consensus 234 i~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~ 313 (647)
T COG1067 234 IGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMP 313 (647)
T ss_pred hhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCC
Confidence 999999999999999988743221 01222 23689999999999754 4455666666666566663 3
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC------CCchhHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG------CQGHRAEL 372 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~------v~s~Ra~i 372 (603)
...+.|...+...... + .+...-..++.+++..|+.++.+.. ....|...
T Consensus 314 ~~~~nr~k~~~~~~q~---------------------v---~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~ 369 (647)
T COG1067 314 ITDANRSKLVQFYVQE---------------------L---ARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLG 369 (647)
T ss_pred CChHHHHHHHHHHHHH---------------------H---HhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHH
Confidence 3455555444322111 1 1111224688999998888876532 23679999
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 373 YAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
.+++.|..+|..+|+..|+.+||++|+...
T Consensus 370 ~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 370 NLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 999999999999999999999999998873
No 194
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.5e-10 Score=117.91 Aligned_cols=213 Identities=20% Similarity=0.182 Sum_probs=129.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~ 197 (603)
=||+.||||||||+|.++|++.|.= . | ..+. ....+++++.+..-+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSI-R--------~------------~~~y------------~~~~liEinshsLFSK 225 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSI-R--------T------------NDRY------------YKGQLIEINSHSLFSK 225 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhee-e--------e------------cCcc------------ccceEEEEehhHHHHH
Confidence 3999999999999999999998741 0 1 0011 2567888999999999
Q ss_pred ccccccchhccccCcccc---cc-cchhcccCc--eEEecccccCC---------------HHHHHHHHHHHHcCceeEe
Q 007444 198 LIGSVDVEESVKTGTTVF---QP-GLLAEAHRG--VLYIDEINLLD---------------EGISNLLLNVLTEGVNIVE 256 (603)
Q Consensus 198 l~G~ldl~~~l~~g~~~~---~~-Gll~~A~~g--IL~IDEi~~l~---------------~~~~~~LL~~l~~g~~~v~ 256 (603)
||+.- |+.+. +. .-|.+-.+. .++|||++.|. -.++|+||.-|+.-+
T Consensus 226 WFsES--------gKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---- 293 (423)
T KOG0744|consen 226 WFSES--------GKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---- 293 (423)
T ss_pred HHhhh--------hhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc----
Confidence 99963 43221 10 011111222 45599998772 147899999998643
Q ss_pred eCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHH
Q 007444 257 REGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (603)
Q Consensus 257 r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I 336 (603)
++| +|++++|+| -...++-+|.||-++...|. ||..+.+.+|++-...- .+..-|
T Consensus 294 ------~~~-NvliL~TSN-l~~siD~AfVDRADi~~yVG-~Pt~~ai~~IlkscieE----------------L~~~gI 348 (423)
T KOG0744|consen 294 ------RYP-NVLILATSN-LTDSIDVAFVDRADIVFYVG-PPTAEAIYEILKSCIEE----------------LISSGI 348 (423)
T ss_pred ------cCC-CEEEEeccc-hHHHHHHHhhhHhhheeecC-CccHHHHHHHHHHHHHH----------------HHhcCe
Confidence 122 788999999 67778999999999999998 66888888887743221 111111
Q ss_pred HHHHH----hccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 337 ILARE----YLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 337 ~~ar~----~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
..-++ +...+...+..+..+..+. ..|. |.|....+=- -++|.+-..-.|+.+++-.|+.++..
T Consensus 349 i~~~~~s~~~~~~i~~~~~~~~~~~~~~-~~gL-SGRtlrkLP~--Laha~y~~~~~v~~~~fl~al~ea~~ 416 (423)
T KOG0744|consen 349 ILFHQRSTGVKEFIKYQKALRNILIELS-TVGL-SGRTLRKLPL--LAHAEYFRTFTVDLSNFLLALLEAAK 416 (423)
T ss_pred eeeeccchhhhHHhHhhHhHHHHHHHHh-hcCC-ccchHhhhhH--HHHHhccCCCccChHHHHHHHHHHHH
Confidence 11111 0001112222222333322 2333 5564444332 23666666668999988777665543
No 195
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.14 E-value=1.6e-09 Score=109.42 Aligned_cols=136 Identities=26% Similarity=0.333 Sum_probs=108.0
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-----------CCCccHHHHhhhccc
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAIN 292 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-----------eg~L~~~LldRf~l~ 292 (603)
-+|+|||||++.|+-+....|..++++.. -.++|.+||.- +.-++-+|+||.-++
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~--------------~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII 353 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDM--------------APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLII 353 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhcc--------------CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhhee
Confidence 47999999999999999999999998764 23566677752 235778999998665
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHH
Q 007444 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (603)
Q Consensus 293 v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i 372 (603)
... |+..++..+|++.+.. -..|.+.++++.+|..+.... |+|..+
T Consensus 354 -~t~-py~~~d~~~IL~iRc~-----------------------------EEdv~m~~~A~d~Lt~i~~~t---sLRYai 399 (454)
T KOG2680|consen 354 -STQ-PYTEEDIKKILRIRCQ-----------------------------EEDVEMNPDALDLLTKIGEAT---SLRYAI 399 (454)
T ss_pred -ecc-cCcHHHHHHHHHhhhh-----------------------------hhccccCHHHHHHHHHhhhhh---hHHHHH
Confidence 443 7888888888775422 226889999999998886543 789999
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCc
Q 007444 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (603)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (603)
.++.+|...+.-.....|+.+||+.|.+|-|-..+
T Consensus 400 ~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 400 HLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 99988888888888889999999999999876543
No 196
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.14 E-value=5.4e-10 Score=130.58 Aligned_cols=210 Identities=21% Similarity=0.164 Sum_probs=153.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEc--CCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI--PLG 192 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l--~~~ 192 (603)
..-+|||.||+.+|||+++..++... ...||.+ +.+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~t------------------------------------------ghkfVRINNHEH 924 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARET------------------------------------------GHKFVRINNHEH 924 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHh------------------------------------------CccEEEecCccc
Confidence 45689999999999999999999876 4467776 455
Q ss_pred CccccccccccchhccccCcccccccchhcc--cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecC-CcE
Q 007444 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC-KPL 269 (603)
Q Consensus 193 ~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A--~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~-~~~ 269 (603)
+...+++|+. .+-..|.-.|+.|.|.+| +|-++++||+|+.+.+++.+|.+++++.+-.+..+...+.+|. +|+
T Consensus 925 TdlqeYiGTy---vTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~ 1001 (4600)
T COG5271 925 TDLQEYIGTY---VTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR 1001 (4600)
T ss_pred chHHHHhhce---eecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee
Confidence 6667889974 234568888999999888 6679999999999999999999999998877777888777775 699
Q ss_pred EEEEeCCCCC-----CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhcc
Q 007444 270 LIATYNPEEG-----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLK 344 (603)
Q Consensus 270 lIattNp~eg-----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~ 344 (603)
++||.||-.+ .|+.++..||--. .++.. ..++..+|+.-
T Consensus 1002 lFATQNppg~YgGRK~LSrAFRNRFlE~-hFddi-pedEle~ILh~---------------------------------- 1045 (4600)
T COG5271 1002 LFATQNPPGGYGGRKGLSRAFRNRFLEM-HFDDI-PEDELEEILHG---------------------------------- 1045 (4600)
T ss_pred EEeecCCCccccchHHHHHHHHhhhHhh-hcccC-cHHHHHHHHhc----------------------------------
Confidence 9999997543 4889999998544 33321 23444444432
Q ss_pred ccCCCHHHHHHHHHHHHcCCCCchhHHHH-------HHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcc
Q 007444 345 DVAIGREQLKYLVMEALRGGCQGHRAELY-------AARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 345 ~v~is~~~l~~L~~~a~~~~v~s~Ra~i~-------llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (603)
...|.+.....+++...... .|..+. ..-+-|.+-.|.||..|..+.+..---+.|..|.+
T Consensus 1046 rc~iapSyakKiVeVyr~Ls---~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~GymllaER~R 1113 (4600)
T COG5271 1046 RCEIAPSYAKKIVEVYRGLS---SRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYMLLAERQR 1113 (4600)
T ss_pred cCccCHHHHHHHHHHHHHhh---hhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHHHHHHhc
Confidence 23455555555555544332 233222 33455777789999999999998877777778876
No 197
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=1.3e-09 Score=122.22 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=132.2
Q ss_pred CCCCCCccc-ccHH--HHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 90 QFFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 90 ~~~~f~~Iv-Gq~~--~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
..++|++++ |... +..++...+-+++ ..+++|+|++|+|||.|+.+|++.+....
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-------------------- 342 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-------------------- 342 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC--------------------
Confidence 568899986 4332 2222222222332 24599999999999999999998762100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCCH--HHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~--~~~ 241 (603)
.+..++.++.......++.. +..+.. .++ ..+. +-.+|+||||+.+.. ..+
T Consensus 343 -----------------~g~~V~Yitaeef~~el~~a------l~~~~~~~f~-~~y~--~~DLLlIDDIq~l~gke~tq 396 (617)
T PRK14086 343 -----------------PGTRVRYVSSEEFTNEFINS------IRDGKGDSFR-RRYR--EMDILLVDDIQFLEDKESTQ 396 (617)
T ss_pred -----------------CCCeEEEeeHHHHHHHHHHH------HHhccHHHHH-HHhh--cCCEEEEehhccccCCHHHH
Confidence 01223333332222222221 111211 111 0111 235999999998843 345
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---CCccHHHHhhh--cccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~L~~~LldRf--~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
..|+.+++.-.. . +-.+|.|+|..+ ..+.+.|..|| ++.+.|. +++.+.|.+|+....
T Consensus 397 eeLF~l~N~l~e----~--------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~-~PD~EtR~aIL~kka---- 459 (617)
T PRK14086 397 EEFFHTFNTLHN----A--------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ-PPELETRIAILRKKA---- 459 (617)
T ss_pred HHHHHHHHHHHh----c--------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC-CCCHHHHHHHHHHHH----
Confidence 666666654321 0 112445666433 34678999999 6777777 568999988876421
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
....+.++++++++|+..... +.|.+..++....+.|.+.++ .||.+.++
T Consensus 460 -------------------------~~r~l~l~~eVi~yLa~r~~r----nvR~LegaL~rL~a~a~~~~~-~itl~la~ 509 (617)
T PRK14086 460 -------------------------VQEQLNAPPEVLEFIASRISR----NIRELEGALIRVTAFASLNRQ-PVDLGLTE 509 (617)
T ss_pred -------------------------HhcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHhhCC-CCCHHHHH
Confidence 123578999999999876422 457777777666667777775 59999998
Q ss_pred HHHHHH
Q 007444 397 KAVELV 402 (603)
Q Consensus 397 ~A~~lv 402 (603)
++++-.
T Consensus 510 ~vL~~~ 515 (617)
T PRK14086 510 IVLRDL 515 (617)
T ss_pred HHHHHh
Confidence 888654
No 198
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=7.9e-10 Score=121.36 Aligned_cols=220 Identities=16% Similarity=0.256 Sum_probs=130.7
Q ss_pred CCCCCCCccc-ccHHH--HHHHHHhhhcc----C--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCC
Q 007444 89 RQFFPLAAVV-GQDAI--KTALLLGAIDR----E--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (603)
Q Consensus 89 ~~~~~f~~Iv-Gq~~~--k~aL~laav~p----~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~ 159 (603)
.+.++|+.++ |.... ..++.-.+-++ + ..+++|+|++|+|||+|+++++..+..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~----------------- 167 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE----------------- 167 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-----------------
Confidence 3568899876 54422 22222111111 1 257999999999999999999987631
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCCH
Q 007444 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE 238 (603)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~ 238 (603)
.+..++.++.......+... +..+.. .++ ..+ ....+|+||||+.+..
T Consensus 168 ----------------------~~~~v~yi~~~~f~~~~~~~------l~~~~~~~f~-~~~--~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 168 ----------------------SGGKILYVRSELFTEHLVSA------IRSGEMQRFR-QFY--RNVDALFIEDIEVFSG 216 (445)
T ss_pred ----------------------cCCCEEEeeHHHHHHHHHHH------HhcchHHHHH-HHc--ccCCEEEEcchhhhcC
Confidence 02233333322211222221 111111 111 011 1346999999999853
Q ss_pred --HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---CCccHHHHhhh--cccccccCCCCHHHHHHHHHHH
Q 007444 239 --GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 239 --~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~L~~~LldRf--~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
..+..|+..++.-. . .| . .+|.|+|..+ ..+.+.|.+|| ++.+.+. |++.+.|..|++..
T Consensus 217 k~~~qeelf~l~N~l~---~-~~-------k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~-~pd~e~r~~iL~~k 283 (445)
T PRK12422 217 KGATQEEFFHTFNSLH---T-EG-------K-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLH-PLTKEGLRSFLERK 283 (445)
T ss_pred ChhhHHHHHHHHHHHH---H-CC-------C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC-CCCHHHHHHHHHHH
Confidence 45666666654321 0 11 1 2444444332 34778999999 4777887 66888888887642
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---HHHHHcCCC
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK---CLAALEGRE 388 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar---a~Aal~gr~ 388 (603)
.. ...+.++++++.+|+.... . +.|.++.++.... +.+.+.|+
T Consensus 284 ~~-----------------------------~~~~~l~~evl~~la~~~~-~---dir~L~g~l~~l~~~~a~~~~~~~- 329 (445)
T PRK12422 284 AE-----------------------------ALSIRIEETALDFLIEALS-S---NVKSLLHALTLLAKRVAYKKLSHQ- 329 (445)
T ss_pred HH-----------------------------HcCCCCCHHHHHHHHHhcC-C---CHHHHHHHHHHHHHHHHHHHhhCC-
Confidence 11 1247899999999987543 2 4578777776553 56667775
Q ss_pred CCcHHHHHHHHHHHc
Q 007444 389 KVNVDDLKKAVELVI 403 (603)
Q Consensus 389 ~Vt~eDv~~A~~lvl 403 (603)
.||.+++++++.-.+
T Consensus 330 ~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 330 LLYVDDIKALLHDVL 344 (445)
T ss_pred CCCHHHHHHHHHHhh
Confidence 599999999987543
No 199
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.09 E-value=3.3e-09 Score=106.08 Aligned_cols=187 Identities=21% Similarity=0.236 Sum_probs=118.3
Q ss_pred CCCCCCCcccccHHHHHHHHHh---hhc-cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG---AID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la---av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
..++++++++|-+.-|..|.-+ .+. -...+|||+|++|||||++++++......
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~---------------------- 78 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 78 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh----------------------
Confidence 3578899999999999998432 221 13467999999999999999999987642
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcccCceEEecccccCCH-HHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-GIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~-~~~ 241 (603)
.+..+|+++..... ..++..+ + . ....=|||+|++.-=.. .-.
T Consensus 79 -----------------~GLRlIev~k~~L~~l~~l~~~l------~-----~------~~~kFIlf~DDLsFe~~d~~y 124 (249)
T PF05673_consen 79 -----------------QGLRLIEVSKEDLGDLPELLDLL------R-----D------RPYKFILFCDDLSFEEGDTEY 124 (249)
T ss_pred -----------------cCceEEEECHHHhccHHHHHHHH------h-----c------CCCCEEEEecCCCCCCCcHHH
Confidence 13455555433211 1122111 0 0 11234999999864333 334
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC----------C----CCcc--------HHHHhhhcccccccCCC
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E----GVVR--------EHLLDRIAINLSADLPM 299 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~----------e----g~L~--------~~LldRf~l~v~v~~p~ 299 (603)
..|-.+|+.+. ...|.++++.||+|.- + +++. -.|.|||++.|.+. |+
T Consensus 125 k~LKs~LeGgl---------e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~-~~ 194 (249)
T PF05673_consen 125 KALKSVLEGGL---------EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY-PP 194 (249)
T ss_pred HHHHHHhcCcc---------ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec-CC
Confidence 55555665332 2358899999999961 1 2332 26889999999887 67
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCH-HHHHHHHHHHHcCCCCchhH
Q 007444 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRA 370 (603)
Q Consensus 300 ~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~-~~l~~L~~~a~~~~v~s~Ra 370 (603)
+.++-.+|++... ....+.++. +......+.+...|..|.|.
T Consensus 195 ~q~~YL~IV~~~~-----------------------------~~~g~~~~~e~l~~~Al~wa~~rg~RSGRt 237 (249)
T PF05673_consen 195 DQEEYLAIVRHYA-----------------------------ERYGLELDEEELRQEALQWALRRGGRSGRT 237 (249)
T ss_pred CHHHHHHHHHHHH-----------------------------HHcCCCCCHHHHHHHHHHHHHHcCCCCHHH
Confidence 8888777766321 111466774 44455666666667667773
No 200
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=1.4e-09 Score=119.81 Aligned_cols=223 Identities=9% Similarity=0.119 Sum_probs=132.6
Q ss_pred CCCCCccc-ccHH--HHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 91 FFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 91 ~~~f~~Iv-Gq~~--~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
.++|+.++ |.+. +..++...+-+|+ ..+++|+|++|+|||.|++++++.+....
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--------------------- 169 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF--------------------- 169 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC---------------------
Confidence 58898876 5432 2333322233443 35799999999999999999998653100
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCC--HHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISN 242 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~--~~~~~ 242 (603)
.+..++.++.......+...+ ..+..... -.... .+..+|+||||+.+. ...++
T Consensus 170 ----------------~~~~v~yv~~~~f~~~~~~~l------~~~~~~~~-~~~~~~~~~dvLiIDDiq~l~~k~~~~e 226 (450)
T PRK14087 170 ----------------SDLKVSYMSGDEFARKAVDIL------QKTHKEIE-QFKNEICQNDVLIIDDVQFLSYKEKTNE 226 (450)
T ss_pred ----------------CCCeEEEEEHHHHHHHHHHHH------HHhhhHHH-HHHHHhccCCEEEEeccccccCCHHHHH
Confidence 022333333322222222221 10000000 00010 123599999999886 56677
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---CCccHHHHhhh--cccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~L~~~LldRf--~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
.|+..++.... . +-.+|.|+|..+ ..+.+.|.+|| ++.+.+. |++.+.|.+|+......
T Consensus 227 ~lf~l~N~~~~----~--------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~-~pd~e~r~~iL~~~~~~--- 290 (450)
T PRK14087 227 IFFTIFNNFIE----N--------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ-KLDNKTATAIIKKEIKN--- 290 (450)
T ss_pred HHHHHHHHHHH----c--------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccC-CcCHHHHHHHHHHHHHh---
Confidence 77777664321 0 113556655333 34678999999 5677777 67999999998753221
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcC-CCCCcHHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG-REKVNVDDLK 396 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~g-r~~Vt~eDv~ 396 (603)
+ .+ .+.++++++.+|++.+. . ..|..+.++..+...+.... ...||.+.++
T Consensus 291 ----------------------~-gl-~~~l~~evl~~Ia~~~~---g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~ 342 (450)
T PRK14087 291 ----------------------Q-NI-KQEVTEEAINFISNYYS---D-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVS 342 (450)
T ss_pred ----------------------c-CC-CCCCCHHHHHHHHHccC---C-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 0 11 23799999999977653 2 56999988877765555552 2469999999
Q ss_pred HHHHH
Q 007444 397 KAVEL 401 (603)
Q Consensus 397 ~A~~l 401 (603)
+++.-
T Consensus 343 ~~l~~ 347 (450)
T PRK14087 343 DLFRD 347 (450)
T ss_pred HHHhh
Confidence 88764
No 201
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.7e-09 Score=112.66 Aligned_cols=190 Identities=15% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
..|..|++|+||++++..|..+.-.....| +||+||+|+|||++|+.+++.+.....-...+.. -..+..-|..|..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~--~~~~~~~c~~c~~ 94 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET--LADPDPASPVWRQ 94 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc--cCCCCCCCHHHHH
Confidence 467789999999999999977655433333 9999999999999999999887320000000000 0001112222221
Q ss_pred cccccccccccccccCCCeEEc--CCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQI--PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l--~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
.. . + .+..++.+ +......+.-..|.++. ++.-...+.. .-.....-|++|||++.|+...++.||
T Consensus 95 i~-~---~------~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~-~~~~g~~rVviIDeAd~l~~~aanaLL 162 (351)
T PRK09112 95 IA-Q---G------AHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQ-TSGDGNWRIVIIDPADDMNRNAANAIL 162 (351)
T ss_pred HH-c---C------CCCCEEEeecccccccccccccCCHHH-HHHHHHHhhh-ccccCCceEEEEEchhhcCHHHHHHHH
Confidence 10 0 0 01222222 11110000000110000 0000000000 001112349999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
..+++.. .+.++|..++ .++.+.+.+.+|+. .+.+. |++.++..+++
T Consensus 163 k~LEEpp-------------~~~~fiLit~-~~~~llptIrSRc~-~i~l~-pl~~~~~~~~L 209 (351)
T PRK09112 163 KTLEEPP-------------ARALFILISH-SSGRLLPTIRSRCQ-PISLK-PLDDDELKKAL 209 (351)
T ss_pred HHHhcCC-------------CCceEEEEEC-ChhhccHHHHhhcc-EEEec-CCCHHHHHHHH
Confidence 9998743 2333333344 45677799999984 55776 66666554443
No 202
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7e-10 Score=128.76 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=115.2
Q ss_pred CCCCCCcccccHHHHHHHHHhh----hcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laa----v~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
....|++|-|.+.++..|.-.. .+| ...|||+.||||||||++||+++..+...+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~------------ 327 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN------------ 327 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc------------
Confidence 5688999999999888883222 222 247799999999999999999998765211
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi 233 (603)
.+.-|+.-....-.+.|+|.. ++.++ -++.+|. ..|+|+|||
T Consensus 328 -------------------------~kisffmrkgaD~lskwvgEa--ERqlr--------llFeeA~k~qPSIIffdeI 372 (1080)
T KOG0732|consen 328 -------------------------RKISFFMRKGADCLSKWVGEA--ERQLR--------LLFEEAQKTQPSIIFFDEI 372 (1080)
T ss_pred -------------------------cccchhhhcCchhhccccCcH--HHHHH--------HHHHHHhccCceEEecccc
Confidence 134455455556677888863 22221 2344443 369999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCC
Q 007444 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (603)
Q Consensus 234 ~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~ 300 (603)
+-|. ..++..||.+|+.-. -...++|||+|| -+..++++|.+ ||+..+.+.+| +
T Consensus 373 dGlapvrSskqEqih~SIvSTLLaLmdGld-----------sRgqVvvigATn-Rpda~dpaLRRPgrfdref~f~lp-~ 439 (1080)
T KOG0732|consen 373 DGLAPVRSSKQEQIHASIVSTLLALMDGLD-----------SRGQVVVIGATN-RPDAIDPALRRPGRFDREFYFPLP-D 439 (1080)
T ss_pred ccccccccchHHHhhhhHHHHHHHhccCCC-----------CCCceEEEcccC-CccccchhhcCCcccceeEeeeCC-c
Confidence 9553 357888888887422 112579999999 77778899865 89999898876 7
Q ss_pred HHHHHHHHHHH
Q 007444 301 FEDRVAAVGIA 311 (603)
Q Consensus 301 ~e~r~eI~~~~ 311 (603)
.+.|..|+.+.
T Consensus 440 ~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 440 VDARAKILDIH 450 (1080)
T ss_pred hHHHHHHHHHh
Confidence 88888887753
No 203
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.06 E-value=1.9e-09 Score=118.43 Aligned_cols=223 Identities=18% Similarity=0.203 Sum_probs=129.8
Q ss_pred CCCCCCCccc-ccHHH--HHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 89 RQFFPLAAVV-GQDAI--KTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 89 ~~~~~f~~Iv-Gq~~~--k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
.+.++|+.++ |.+.. ..++...+-+|+ ..+++|+|++|+|||.|+.++++.+....
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-------------------- 158 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-------------------- 158 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC--------------------
Confidence 3568899976 64422 122221122343 35799999999999999999998752100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCC--HHHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLD--EGIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~--~~~~ 241 (603)
.+..++.++.......+... +..+.. .+.. .+ .....+|+|||++.+. ...+
T Consensus 159 -----------------~~~~v~yi~~~~f~~~~~~~------~~~~~~~~f~~-~~-~~~~dvLlIDDi~~l~~~~~~q 213 (440)
T PRK14088 159 -----------------PDLRVMYITSEKFLNDLVDS------MKEGKLNEFRE-KY-RKKVDVLLIDDVQFLIGKTGVQ 213 (440)
T ss_pred -----------------CCCeEEEEEHHHHHHHHHHH------HhcccHHHHHH-HH-HhcCCEEEEechhhhcCcHHHH
Confidence 01122333222111222221 111110 0110 00 0124599999999773 2345
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
..|+..++.-.. .| ..+|| |+|..+. .+.+.|.+||. +.+.+. |++.+.|.+|++....
T Consensus 214 ~elf~~~n~l~~----~~-------k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl~v~i~-~pd~e~r~~IL~~~~~--- 277 (440)
T PRK14088 214 TELFHTFNELHD----SG-------KQIVI-CSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKKIARKMLE--- 277 (440)
T ss_pred HHHHHHHHHHHH----cC-------CeEEE-ECCCCHHHHHHHHHHHhhHHhcCceEeeC-CCCHHHHHHHHHHHHH---
Confidence 556665543210 01 12344 4443333 35678889984 555676 6799999888764211
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
...+.++++++.+|++... + +.|.+..++....+.+.+.|+ .||.+.+.
T Consensus 278 --------------------------~~~~~l~~ev~~~Ia~~~~-~---~~R~L~g~l~~l~~~~~~~~~-~it~~~a~ 326 (440)
T PRK14088 278 --------------------------IEHGELPEEVLNFVAENVD-D---NLRRLRGAIIKLLVYKETTGE-EVDLKEAI 326 (440)
T ss_pred --------------------------hcCCCCCHHHHHHHHhccc-c---CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 1257899999999977642 2 568888887777777777776 59999999
Q ss_pred HHHHHHc
Q 007444 397 KAVELVI 403 (603)
Q Consensus 397 ~A~~lvl 403 (603)
+++.-.+
T Consensus 327 ~~L~~~~ 333 (440)
T PRK14088 327 LLLKDFI 333 (440)
T ss_pred HHHHHHh
Confidence 9887653
No 204
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-09 Score=112.41 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=83.0
Q ss_pred cCceEEecccccCC------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCCccHHHHhh
Q 007444 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDR 288 (603)
Q Consensus 224 ~~gIL~IDEi~~l~------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~L~~~LldR 288 (603)
+.||+|||||+.+. ..+|.-||..++... ....-|...+ .++++||+--. .+..|-|.|--|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGst-V~TKyG~VkT--dHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGST-VSTKYGPVKT--DHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCce-eecccccccc--ceEEEEecCceecCChhhcChhhcCC
Confidence 47999999998761 256777777766333 2233333222 14566666432 457788999999
Q ss_pred hcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC---
Q 007444 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--- 365 (603)
Q Consensus 289 f~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v--- 365 (603)
|.++|++. +.+.+....|+- .|+. ..+..+........-.+.+++++++.|++++|..|-
T Consensus 327 fPIRVEL~-~Lt~~Df~rILt-------ep~~---------sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~E 389 (444)
T COG1220 327 FPIRVELD-ALTKEDFERILT-------EPKA---------SLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTE 389 (444)
T ss_pred CceEEEcc-cCCHHHHHHHHc-------Ccch---------HHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccccc
Confidence 99999998 567776665643 1111 112222222222333467999999999999998763
Q ss_pred -CchhHHHHHHH
Q 007444 366 -QGHRAELYAAR 376 (603)
Q Consensus 366 -~s~Ra~i~llr 376 (603)
.|.|.+-.++.
T Consensus 390 NIGARRLhTvlE 401 (444)
T COG1220 390 NIGARRLHTVLE 401 (444)
T ss_pred chhHHHHHHHHH
Confidence 36676665553
No 205
>PRK05642 DNA replication initiation factor; Validated
Probab=99.02 E-value=6e-09 Score=105.19 Aligned_cols=129 Identities=18% Similarity=0.300 Sum_probs=82.8
Q ss_pred ceEEecccccCC--HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC-CCCCC-ccHHHHhhh--cccccccCCC
Q 007444 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN-PEEGV-VREHLLDRI--AINLSADLPM 299 (603)
Q Consensus 226 gIL~IDEi~~l~--~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN-p~eg~-L~~~LldRf--~l~v~v~~p~ 299 (603)
-+|+||+|+.+. +..+..|+..++.-. ++ | ..+||+++. |.+.. +.+.|.+|| ++.+.+. |+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~-g-------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~ 166 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLR---DS-G-------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GL 166 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHH---hc-C-------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CC
Confidence 489999999874 344566777775421 00 1 224555543 22333 468999999 4666776 55
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 300 ~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
+.+.+..+++.. +.. ..+.++++++++|++.+.. +.|..+.++..--
T Consensus 167 ~~e~~~~il~~k---------------------------a~~--~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~ 213 (234)
T PRK05642 167 SDEDKLRALQLR---------------------------ASR--RGLHLTDEVGHFILTRGTR----SMSALFDLLERLD 213 (234)
T ss_pred CHHHHHHHHHHH---------------------------HHH--cCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 788887776531 111 1478999999999876432 5788888887665
Q ss_pred HHHHHcCCCCCcHHHHHHHHH
Q 007444 380 CLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~ 400 (603)
. +++.....||..-+++++.
T Consensus 214 ~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 214 Q-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred H-HHHHcCCcCCHHHHHHHhc
Confidence 4 5555334599888887753
No 206
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2.8e-09 Score=114.24 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=104.3
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeec-c-ccccCCCCCCCcccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVV-G-SIANADPTCPDEWEDGL 165 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~-~-~~~n~~~~~~~~~~~~~ 165 (603)
.+|..|++|+||+.+++.|.-+.......| +||+||+|+||+++|.++++.+--..... + |..+++.-+...-|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 467889999999999999977665544555 99999999999999999998862100000 0 00000000001123333
Q ss_pred cccccccccccccccccCCCeEEcCCCCccc--cccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTED--RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~--~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.. +.. + ....|+.+.....+. ++-..|.++. ++.-...+.- .......-|++|||++.++...+|.
T Consensus 93 ~~-i~~---~------~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~-~~~~~~~kVviIDead~m~~~aana 160 (365)
T PRK07471 93 RR-IAA---G------AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGL-TAAEGGWRVVIVDTADEMNANAANA 160 (365)
T ss_pred HH-HHc---c------CCCCeEEEecccccccccccccccHHH-HHHHHHHhCc-CcccCCCEEEEEechHhcCHHHHHH
Confidence 22 100 0 122343332211111 1111111111 0000000000 0011223499999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
||..+++-. .+.++|.+++ ..+.+.+.+.+|+... .+. |++.++..+++
T Consensus 161 LLK~LEepp-------------~~~~~IL~t~-~~~~llpti~SRc~~i-~l~-~l~~~~i~~~L 209 (365)
T PRK07471 161 LLKVLEEPP-------------ARSLFLLVSH-APARLLPTIRSRCRKL-RLR-PLAPEDVIDAL 209 (365)
T ss_pred HHHHHhcCC-------------CCeEEEEEEC-CchhchHHhhccceEE-ECC-CCCHHHHHHHH
Confidence 999999742 2334555555 4456778888887655 666 55666554443
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=1.1e-08 Score=104.84 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=85.2
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC-CCc----cHHHHhhhcccccccCC
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVV----REHLLDRIAINLSADLP 298 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e-g~L----~~~LldRf~l~v~v~~p 298 (603)
...+|+|||++.++...++.|....+... ++. ..+.++.+.+++- ..+ ...+.+|+...+.+. |
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~-~ 191 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQT-----DNA-----KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG-P 191 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCccc-----CCC-----CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC-C
Confidence 34589999999999888776654433210 110 1223344433321 111 235777887777776 5
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
.+.++..+++..... .+ .......+++++++.|.+.+ .|. .|....+...+
T Consensus 192 l~~~e~~~~l~~~l~------------------------~~-g~~~~~~~~~~~~~~i~~~s--~G~--p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLE------------------------RA-GNRDAPVFSEGAFDAIHRFS--RGI--PRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHH------------------------Hc-CCCCCCCcCHHHHHHHHHHc--CCc--ccHHHHHHHHH
Confidence 666654444332211 01 11223468999999887765 233 57777888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH
Q 007444 379 KCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~l 401 (603)
...|...|...|+.++|++++..
T Consensus 243 ~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 243 LLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 88888889999999999999875
No 208
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.97 E-value=6.4e-09 Score=103.92 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=109.7
Q ss_pred CCCCCCccc-ccH--HHHHHHHHhhhccCC--CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 90 QFFPLAAVV-GQD--AIKTALLLGAIDREI--GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 90 ~~~~f~~Iv-Gq~--~~k~aL~laav~p~~--~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
+.|+|+.+| |.. .+..++..-+-+|+. .+++|+|++|+|||.|..++++.+....
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-------------------- 62 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-------------------- 62 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC--------------------
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc--------------------
Confidence 468999985 642 333444322333433 5699999999999999999988652100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc-cccccchhcccCceEEecccccCCHH--HH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEG--IS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~~--~~ 241 (603)
.+..++.++.......+... +..+.. .+.. .+. .--+|+||+|+.+... .+
T Consensus 63 -----------------~~~~v~y~~~~~f~~~~~~~------~~~~~~~~~~~-~~~--~~DlL~iDDi~~l~~~~~~q 116 (219)
T PF00308_consen 63 -----------------PGKRVVYLSAEEFIREFADA------LRDGEIEEFKD-RLR--SADLLIIDDIQFLAGKQRTQ 116 (219)
T ss_dssp -----------------TTS-EEEEEHHHHHHHHHHH------HHTTSHHHHHH-HHC--TSSEEEEETGGGGTTHHHHH
T ss_pred -----------------ccccceeecHHHHHHHHHHH------HHcccchhhhh-hhh--cCCEEEEecchhhcCchHHH
Confidence 02233333322222222221 111111 1111 111 2359999999999664 47
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC---CCccHHHHhhhcc--cccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIAI--NLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e---g~L~~~LldRf~l--~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
..|...++.-.. . .-.+|.|++..+ ..+.+.|.+||.- .+.+. |++.+.|.+|+....
T Consensus 117 ~~lf~l~n~~~~----~--------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~-~pd~~~r~~il~~~a---- 179 (219)
T PF00308_consen 117 EELFHLFNRLIE----S--------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ-PPDDEDRRRILQKKA---- 179 (219)
T ss_dssp HHHHHHHHHHHH----T--------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-----HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHh----h--------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcC-CCCHHHHHHHHHHHH----
Confidence 777777765321 0 113455554333 3478899999954 66666 668888888876421
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aa 383 (603)
....+.++++++++|++.+.. +.|....++..-.+.+.
T Consensus 180 -------------------------~~~~~~l~~~v~~~l~~~~~~----~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 180 -------------------------KERGIELPEEVIEYLARRFRR----DVRELEGALNRLDAYAQ 217 (219)
T ss_dssp -------------------------HHTT--S-HHHHHHHHHHTTS----SHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhCCCCcHHHHHHHHHhhcC----CHHHHHHHHHHHHHHhh
Confidence 123567999999999877422 56777777766555554
No 209
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7e-09 Score=110.75 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=96.5
Q ss_pred CCCCCCcccccHHHHHHHH---Hhhhc----------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALL---LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~---laav~----------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
++-+|+-++=....|+.+. ...+. |=.+|-|||||||||||+++.|+|+.|.-
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------------- 261 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------------- 261 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC--------------
Confidence 4577889988888888883 22221 22577999999999999999999999841
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccC
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l 236 (603)
.+..+.+ ++-..-. | .+.=|+...+..||+|-+|+.-
T Consensus 262 ----------------------------dIydLeL--t~v~~n~--d-----------Lr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 262 ----------------------------DIYDLEL--TEVKLDS--D-----------LRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred ----------------------------ceEEeee--ccccCcH--H-----------HHHHHHhCCCCcEEEEeecccc
Confidence 1111111 1111101 1 1222445556789999888753
Q ss_pred ------------------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 237 ------------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 237 ------------------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
..-.+..||.+++.= ....-..-++|.||| ....|+|+|++ |.+++|.+.
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl---------wSscg~ERIivFTTN-h~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL---------WSSCGDERIIVFTTN-HKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhccc---------cccCCCceEEEEecC-ChhhcCHhhcCCCcceeEEEcC
Confidence 112456788888732 111111347889999 78889999999 999999988
Q ss_pred CCCCHHHHHHHH
Q 007444 297 LPMTFEDRVAAV 308 (603)
Q Consensus 297 ~p~~~e~r~eI~ 308 (603)
.- +.+.-..+.
T Consensus 369 yC-tf~~fK~La 379 (457)
T KOG0743|consen 369 YC-TFEAFKTLA 379 (457)
T ss_pred CC-CHHHHHHHH
Confidence 53 455444333
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.8e-09 Score=114.30 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=93.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
..++|++||||||||.+++++++.. ...++.++.....
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~------------------------------------------~a~~~~i~~peli 255 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEY------------------------------------------GAFLFLINGPELI 255 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHh------------------------------------------CceeEecccHHHH
Confidence 4679999999999999999999874 3345555555444
Q ss_pred ccccccccchhccccCcccccccchhcc---c-CceEEecccccCC----------HHHHHHHHHHHHcCceeEeeCCee
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---H-RGVLYIDEINLLD----------EGISNLLLNVLTEGVNIVEREGIS 261 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~-~gIL~IDEi~~l~----------~~~~~~LL~~l~~g~~~v~r~G~s 261 (603)
..+.|.- ++.+ + -.+++| . +.|+||||++.+- ..+...|+.+|+...
T Consensus 256 ~k~~gEt--e~~L-------R-~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~--------- 316 (693)
T KOG0730|consen 256 SKFPGET--ESNL-------R-KAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK--------- 316 (693)
T ss_pred Hhcccch--HHHH-------H-HHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc---------
Confidence 5555531 1111 0 112222 1 6799999999874 357788888887533
Q ss_pred eEecCCcEEEEEeCCCCCCccHHHHh-hhcccccccCCCCHHHHHHHHHHH
Q 007444 262 FKHPCKPLLIATYNPEEGVVREHLLD-RIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 262 ~~~p~~~~lIattNp~eg~L~~~Lld-Rf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
-..++++|+++| .+..|++++.+ ||+.-|.|..| +...|.+|++..
T Consensus 317 --~~~~vivl~atn-rp~sld~alRRgRfd~ev~IgiP-~~~~RldIl~~l 363 (693)
T KOG0730|consen 317 --PDAKVIVLAATN-RPDSLDPALRRGRFDREVEIGIP-GSDGRLDILRVL 363 (693)
T ss_pred --CcCcEEEEEecC-CccccChhhhcCCCcceeeecCC-CchhHHHHHHHH
Confidence 113678999999 88888999887 99999999865 888899998753
No 211
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=3.6e-08 Score=111.96 Aligned_cols=61 Identities=10% Similarity=-0.073 Sum_probs=47.0
Q ss_pred CccccccCCCCCCCCcccccHHHHHHHHHhhhc---cC-C-CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAID---RE-I-GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~---p~-~-~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...++..+++|..|++|+||++.+..+.....+ +. . .-++|+||+|||||++++.++..+.
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345677789999999999999887776432211 11 1 2299999999999999999999874
No 212
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.9e-08 Score=115.01 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=136.6
Q ss_pred CCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
+.-.++-|+|.++.++.+.-...-....+-+|.|+||+|||.++..||...-.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~--------------------------- 217 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN--------------------------- 217 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc---------------------------
Confidence 45668889999987777644444445677888999999999999999987632
Q ss_pred cccccccccccccCCCeEEcCCCCccccccccccchhccccCccccc-ccch---hcccCceEEecccccC-----C---
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQ-PGLL---AEAHRGVLYIDEINLL-----D--- 237 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~-~Gll---~~A~~gIL~IDEi~~l-----~--- 237 (603)
+..+....+..++.+..+.. +.+ +-+.|....+ .+++ .++.+-||||||||.+ .
T Consensus 218 -----g~VP~~L~~~~i~sLD~g~L----vAG-----akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~ 283 (786)
T COG0542 218 -----GDVPESLKDKRIYSLDLGSL----VAG-----AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG 283 (786)
T ss_pred -----CCCCHHHcCCEEEEecHHHH----hcc-----ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc
Confidence 11111123444444443321 110 0111111000 1222 2234569999999987 1
Q ss_pred -HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHH-H
Q 007444 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGI-A 311 (603)
Q Consensus 238 -~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~-~ 311 (603)
-+..|.|..+|..|.+ .+||+|+.+|+ +=+++|-+||... .|.. |+.++-..|++- .
T Consensus 284 a~DAaNiLKPaLARGeL---------------~~IGATT~~EYRk~iEKD~AL~RRFQ~V-~V~E-Ps~e~ti~ILrGlk 346 (786)
T COG0542 284 AMDAANLLKPALARGEL---------------RCIGATTLDEYRKYIEKDAALERRFQKV-LVDE-PSVEDTIAILRGLK 346 (786)
T ss_pred ccchhhhhHHHHhcCCe---------------EEEEeccHHHHHHHhhhchHHHhcCcee-eCCC-CCHHHHHHHHHHHH
Confidence 3477888888988873 57888887775 3478999999987 7874 488888888773 3
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC 365 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v 365 (603)
..|+.+.. +.-..+.+...+.....+.+.-.++|.+++.+-+.|.....
T Consensus 347 ~~yE~hH~-----V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 347 ERYEAHHG-----VRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHccC-----ceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 33332221 22234566667777777888888999999988887765433
No 213
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.84 E-value=9.7e-09 Score=107.58 Aligned_cols=211 Identities=20% Similarity=0.189 Sum_probs=137.0
Q ss_pred CC-cccccHHHHHHHH----Hhhh--ccCCCcEEEECCCCChHHHHHHHHHHhCCCC--eeeccccccCCCCC-------
Q 007444 94 LA-AVVGQDAIKTALL----LGAI--DREIGGIAISGRRGTAKTVMARGLHAILPPI--EVVVGSIANADPTC------- 157 (603)
Q Consensus 94 f~-~IvGq~~~k~aL~----laav--~p~~~gVLL~GppGTGKT~lArala~~l~~~--~~~~~~~~n~~~~~------- 157 (603)
|. ++.|.++.+..+. .|+. .....=+||.||+|+|||++++.|...+..- -.+.+|+.+-+|-.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r 138 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELR 138 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHH
Confidence 45 8999999888773 2222 2223339999999999999999999988643 34678887777642
Q ss_pred -----------CCccccccccccccccccccccc---------ccCCCeEEc----CCCCccccccccccchhccccCc-
Q 007444 158 -----------PDEWEDGLDEKAEYDTAGNLKTQ---------IARSPFVQI----PLGVTEDRLIGSVDVEESVKTGT- 212 (603)
Q Consensus 158 -----------~~~~~~~~~~~i~~~~~~~~~~~---------~~~~pfv~l----~~~~~~~~l~G~ldl~~~l~~g~- 212 (603)
....|..|+.++.....+.+... ..+.-.... +.+.....|+|.+|+.+-..-+.
T Consensus 139 ~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~s~~ 218 (358)
T PF08298_consen 139 REFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEYSES 218 (358)
T ss_pred HHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhhccC
Confidence 12234455544422222221110 000111111 12334568999998766433222
Q ss_pred --cccc-ccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------CccH
Q 007444 213 --TVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------VVRE 283 (603)
Q Consensus 213 --~~~~-~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------~L~~ 283 (603)
..+. -|.|..|++||+=+=|+-..+.+.+..||.+.++|.+.+. |.-...+.+-++||.||+.+. +--+
T Consensus 219 dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~~~~e 296 (358)
T PF08298_consen 219 DPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNNKNNE 296 (358)
T ss_pred CCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhccccch
Confidence 2222 4899999999998889999999999999999999997663 222235678899999997553 2348
Q ss_pred HHHhhhcccccccCCCCHHHHHHH
Q 007444 284 HLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 284 ~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
+|.||+.++ .|++..+.....+|
T Consensus 297 Af~DRi~~I-~VPY~L~~s~E~kI 319 (358)
T PF08298_consen 297 AFKDRIEVI-KVPYCLRVSEEVKI 319 (358)
T ss_pred hhhhheEEE-eccccCCHHHHHHH
Confidence 999999555 88765555554444
No 214
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.82 E-value=1.6e-08 Score=111.84 Aligned_cols=207 Identities=19% Similarity=0.224 Sum_probs=132.9
Q ss_pred CCcccccHHHHHHHHH----hhh--ccCCCcEEEECCCCChHHHHHHHHHHhCCCC--eeecc----ccccCCCCC---C
Q 007444 94 LAAVVGQDAIKTALLL----GAI--DREIGGIAISGRRGTAKTVMARGLHAILPPI--EVVVG----SIANADPTC---P 158 (603)
Q Consensus 94 f~~IvGq~~~k~aL~l----aav--~p~~~gVLL~GppGTGKT~lArala~~l~~~--~~~~~----~~~n~~~~~---~ 158 (603)
|.++.|+++++..+.- ++. .....-++|.||||+|||+||+.|+..+... -.+.+ |+.+-+|-. |
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p~ 154 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFDP 154 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCCh
Confidence 8899999999998832 222 2233349999999999999999999887543 23444 766666542 1
Q ss_pred C-------------------cccccccccccccccccccccccCCCeEE-------------c----CCCCccccccccc
Q 007444 159 D-------------------EWEDGLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRLIGSV 202 (603)
Q Consensus 159 ~-------------------~~~~~~~~~i~~~~~~~~~~~~~~~pfv~-------------l----~~~~~~~~l~G~l 202 (603)
+ .+|..|..++. .-+|.+. ..+++. . +-+.....|+|.+
T Consensus 155 ~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~-e~~Gd~~----~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~v 229 (644)
T PRK15455 155 DEDGPILEEEYGIPRRYLGTIMSPWAVKRLH-EFGGDIS----KFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKV 229 (644)
T ss_pred hhhHHHHHHHhCCCccccCCCCCHHHHHHHH-HhCCCch----heEEEEEeeccccceEEEecCCCCCCCCChhHhccce
Confidence 1 12333333321 1122211 122222 1 1224566899999
Q ss_pred cchhccccCcc---cc-cccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC
Q 007444 203 DVEESVKTGTT---VF-QPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE 278 (603)
Q Consensus 203 dl~~~l~~g~~---~~-~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e 278 (603)
|+.+...-+.. .+ -.|-|..|++|++=+=|+-..+.+.+..||.+.++|.+... +.--.+|.+-++||.||--+
T Consensus 230 di~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E 307 (644)
T PRK15455 230 DIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESE 307 (644)
T ss_pred eHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHH
Confidence 98875433222 11 15999999999887779999999999999999999985321 22224667889999999533
Q ss_pred ------CCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 279 ------GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 279 ------g~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
..--++|+||+-++ .|++-....+-..|-
T Consensus 308 ~~~F~~nk~nEA~~DRi~~V-~VPY~lr~~eE~kIY 342 (644)
T PRK15455 308 WQTFRNNKNNEAFLDRIYIV-KVPYCLRVSEEIKIY 342 (644)
T ss_pred HHHHhcCccchhhhceEEEE-eCCccCChhHHHHHH
Confidence 34568999998763 665443334444443
No 215
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=6.9e-08 Score=103.68 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=137.7
Q ss_pred CCCCCCCcccccHHHHHHH---HHhhhcc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 89 RQFFPLAAVVGQDAIKTAL---LLGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL---~laav~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
.+.|+|+.+|.-+.-..|. ...+-+| .-.+++|+|+.|.|||.|+.++.+..-...
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~------------------- 141 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG------------------- 141 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-------------------
Confidence 3568999876655433333 2222234 256799999999999999999998763100
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCc-ccccccchhcccCceEEecccccCCH--HH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~-~~~~~Gll~~A~~gIL~IDEi~~l~~--~~ 240 (603)
.+..++.+........++- +++.+. ..|+.-. +--+|+||+|+.+.. ..
T Consensus 142 ------------------~~a~v~y~~se~f~~~~v~------a~~~~~~~~Fk~~y----~~dlllIDDiq~l~gk~~~ 193 (408)
T COG0593 142 ------------------PNARVVYLTSEDFTNDFVK------ALRDNEMEKFKEKY----SLDLLLIDDIQFLAGKERT 193 (408)
T ss_pred ------------------CCceEEeccHHHHHHHHHH------HHHhhhHHHHHHhh----ccCeeeechHhHhcCChhH
Confidence 1223444332222112221 122211 1222211 234899999998743 34
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
+..+....+.-.. .| . .+|.|+..-+. .+.+.|..||. +.+.+. |++.+.|..|+..
T Consensus 194 qeefFh~FN~l~~----~~-------k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~-~Pd~e~r~aiL~k----- 255 (408)
T COG0593 194 QEEFFHTFNALLE----NG-------K-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE-PPDDETRLAILRK----- 255 (408)
T ss_pred HHHHHHHHHHHHh----cC-------C-EEEEEcCCCchhhccccHHHHHHHhceeEEeeC-CCCHHHHHHHHHH-----
Confidence 5555555443210 01 1 45566553333 35689999994 555665 7788988888764
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
+.....+.++++++.+++..-. .+.|.+.-++...-+.|...++ .||.+-+
T Consensus 256 ------------------------ka~~~~~~i~~ev~~~la~~~~----~nvReLegaL~~l~~~a~~~~~-~iTi~~v 306 (408)
T COG0593 256 ------------------------KAEDRGIEIPDEVLEFLAKRLD----RNVRELEGALNRLDAFALFTKR-AITIDLV 306 (408)
T ss_pred ------------------------HHHhcCCCCCHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhcCc-cCcHHHH
Confidence 2233468999999999977532 2568888888888888888888 7999999
Q ss_pred HHHHHHHcC
Q 007444 396 KKAVELVIL 404 (603)
Q Consensus 396 ~~A~~lvl~ 404 (603)
.++++..+.
T Consensus 307 ~e~L~~~~~ 315 (408)
T COG0593 307 KEILKDLLR 315 (408)
T ss_pred HHHHHHhhc
Confidence 999887644
No 216
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=5.6e-08 Score=103.08 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCcccc-cHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc---cccccc
Q 007444 94 LAAVVG-QDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---DGLDEK 168 (603)
Q Consensus 94 f~~IvG-q~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~---~~~~~~ 168 (603)
|..|+| |+.++..|.-+.......| .||+||+|+||+++|+.+++.+ +|.....+..| ..|...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l-----------~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL-----------FCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH-----------CCCCCCCCCCCCcCHHHHHH
Confidence 677899 8888888865544334455 5999999999999999999876 34321222233 333321
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
.. + ....+..+... ..-++.-++..... .....| ..+...|++|||++.++...+|.||..|
T Consensus 73 ~~----~------~hpD~~~i~~~---~~~i~id~ir~l~~--~~~~~~---~~~~~kvviI~~a~~~~~~a~NaLLK~L 134 (329)
T PRK08058 73 DS----G------NHPDVHLVAPD---GQSIKKDQIRYLKE--EFSKSG---VESNKKVYIIEHADKMTASAANSLLKFL 134 (329)
T ss_pred hc----C------CCCCEEEeccc---cccCCHHHHHHHHH--HHhhCC---cccCceEEEeehHhhhCHHHHHHHHHHh
Confidence 10 0 01223222211 01111101110000 000001 1234569999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
++-- .+.++|.+++ ....+.+.+.+|.... .+. |++.++..+.+
T Consensus 135 EEPp-------------~~~~~Il~t~-~~~~ll~TIrSRc~~i-~~~-~~~~~~~~~~L 178 (329)
T PRK08058 135 EEPS-------------GGTTAILLTE-NKHQILPTILSRCQVV-EFR-PLPPESLIQRL 178 (329)
T ss_pred cCCC-------------CCceEEEEeC-ChHhCcHHHHhhceee-eCC-CCCHHHHHHHH
Confidence 9742 3455666666 5568889999998766 666 44555544444
No 217
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.1e-06 Score=92.42 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=101.6
Q ss_pred CCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 93 PLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
.|++|+||+.++..|.-+.-... ....||+||.|+||+++|.+++..+- |...+ .-|..|. +.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll-----------c~~~c--~~c~~~~--~~- 65 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL-----------SQGSP--SKNIRRR--LE- 65 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc-----------CCCCC--CCcHhcc--cc-
Confidence 58899999999998866554333 35699999999999999999998863 32211 1122222 10
Q ss_pred cccccccccccCCCeEEcCCC-Cccccc--------cc-------cccch--hccccCcccccccchhcccCceEEeccc
Q 007444 172 DTAGNLKTQIARSPFVQIPLG-VTEDRL--------IG-------SVDVE--ESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~-~~~~~l--------~G-------~ldl~--~~l~~g~~~~~~Gll~~A~~gIL~IDEi 233 (603)
.+ ....+..+.+. ...... .| .|-++ +.+.. ...... ..+...|++||++
T Consensus 66 --~~------~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~--~l~~~p--~~~~~kVvII~~a 133 (314)
T PRK07399 66 --EG------NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKR--FLSRPP--LEAPRKVVVIEDA 133 (314)
T ss_pred --cC------CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHH--HHccCc--ccCCceEEEEEch
Confidence 00 01122222111 001110 00 00000 00000 000000 1234569999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 234 ~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
+.|+...+|.||..|++-- +.++|..++ ....|-+.+.+|.... .+. |.+.++..+++...
T Consensus 134 e~m~~~aaNaLLK~LEEPp--------------~~~fILi~~-~~~~Ll~TI~SRcq~i-~f~-~l~~~~~~~~L~~~ 194 (314)
T PRK07399 134 ETMNEAAANALLKTLEEPG--------------NGTLILIAP-SPESLLPTIVSRCQII-PFY-RLSDEQLEQVLKRL 194 (314)
T ss_pred hhcCHHHHHHHHHHHhCCC--------------CCeEEEEEC-ChHhCcHHHHhhceEE-ecC-CCCHHHHHHHHHHh
Confidence 9999999999999998742 444555555 5678889999998655 676 55667666666543
No 218
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2e-07 Score=108.02 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=90.7
Q ss_pred CcccccHHHHHHHHHhhh-------cc-CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p-~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
..|+||+++..|+-.+.. +| ....+||.||.|+|||-||++|+..+-.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg------------------------ 617 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG------------------------ 617 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC------------------------
Confidence 368999999998844322 22 3455999999999999999999998732
Q ss_pred ccccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCccccc-ccchhcc----cCceEEecccccCCHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQ-PGLLAEA----HRGVLYIDEINLLDEG 239 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~-~Gll~~A----~~gIL~IDEi~~l~~~ 239 (603)
....|+.+..+... .++.|+-+ |-.-.. -|.|.++ -..||+||||+.....
T Consensus 618 ---------------se~~~IriDmse~~evskligsp~-------gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 618 ---------------SEENFIRLDMSEFQEVSKLIGSPP-------GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred ---------------CccceEEechhhhhhhhhccCCCc-------ccccchhHHHHHHHHhcCCceEEEEechhhcCHH
Confidence 13456665544321 23333211 000011 1344444 2369999999999999
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp 276 (603)
+++.|++++++|+++ ...|..+.+. +.+||+|+|-
T Consensus 676 v~n~llq~lD~Grlt-Ds~Gr~Vd~k-N~I~IMTsn~ 710 (898)
T KOG1051|consen 676 VLNILLQLLDRGRLT-DSHGREVDFK-NAIFIMTSNV 710 (898)
T ss_pred HHHHHHHHHhcCccc-cCCCcEeecc-ceEEEEeccc
Confidence 999999999999954 3345555554 7899999885
No 219
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.70 E-value=3e-07 Score=89.37 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=50.3
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHH
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~ 303 (603)
...|++|||++.+....++.||..|++.. .+..+|.++| ....+.+.+.+|+. .+.+. |++.++
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~i~sr~~-~~~~~-~~~~~~ 159 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPP-------------PNTLFILITP-SPEKLLPTIRSRCQ-VLPFP-PLSEEA 159 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEEC-ChHhChHHHHhhcE-EeeCC-CCCHHH
Confidence 45699999999999999999999998642 2445666666 44678899999986 44776 556665
Q ss_pred HHHH
Q 007444 304 RVAA 307 (603)
Q Consensus 304 r~eI 307 (603)
..++
T Consensus 160 ~~~~ 163 (188)
T TIGR00678 160 LLQW 163 (188)
T ss_pred HHHH
Confidence 4444
No 220
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.8e-07 Score=98.45 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCcccccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 93 PLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
.|++|+||+.++..|..........| .||+||+|+|||++|+.+++.+- |.....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~-----------c~~~~~------------- 57 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL-----------GKSQQR------------- 57 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc-----------CCCCCC-------------
Confidence 58999999999999876554444445 58999999999999999998762 311000
Q ss_pred cccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcC
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g 251 (603)
....|..+... +..-++.-++..... .....| ..+..-|++||+++.++...+|.||..+++-
T Consensus 58 ----------~h~D~~~~~~~--~~~~i~v~~ir~~~~--~~~~~p---~~~~~kv~iI~~ad~m~~~a~naLLK~LEep 120 (313)
T PRK05564 58 ----------EYVDIIEFKPI--NKKSIGVDDIRNIIE--EVNKKP---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred ----------CCCCeEEeccc--cCCCCCHHHHHHHHH--HHhcCc---ccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 01122222110 111111101111000 000011 1234569999999999999999999999974
Q ss_pred ceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 252 ~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
. .+.++|.+++ +...+.+.+..|.... .+. +++.++....
T Consensus 121 p-------------~~t~~il~~~-~~~~ll~TI~SRc~~~-~~~-~~~~~~~~~~ 160 (313)
T PRK05564 121 P-------------KGVFIILLCE-NLEQILDTIKSRCQIY-KLN-RLSKEEIEKF 160 (313)
T ss_pred C-------------CCeEEEEEeC-ChHhCcHHHHhhceee-eCC-CcCHHHHHHH
Confidence 2 2334444443 3457888999998644 666 4455544333
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.67 E-value=5.1e-07 Score=89.31 Aligned_cols=155 Identities=24% Similarity=0.293 Sum_probs=100.6
Q ss_pred CCCCCCCcccccHHHHHHHHHh---hhc-cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG---AID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la---av~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
..++.+.+|+|-|..+.+|.-+ .+. -.-.+|||+|-.|||||++++++......
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~---------------------- 111 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 111 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh----------------------
Confidence 4568899999999999999422 221 12467999999999999999999988642
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcccCceEEecccccCCHHH-H
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI-S 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~-~ 241 (603)
....+|+++..-.. -.+++.+ =....+=|||+|++.-=..+. .
T Consensus 112 -----------------~glrLVEV~k~dl~~Lp~l~~~L-----------------r~~~~kFIlFcDDLSFe~gd~~y 157 (287)
T COG2607 112 -----------------EGLRLVEVDKEDLATLPDLVELL-----------------RARPEKFILFCDDLSFEEGDDAY 157 (287)
T ss_pred -----------------cCCeEEEEcHHHHhhHHHHHHHH-----------------hcCCceEEEEecCCCCCCCchHH
Confidence 13446665433211 1222211 012234599999997654444 4
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC----------CC---Ccc--------HHHHhhhcccccccCCCC
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------EG---VVR--------EHLLDRIAINLSADLPMT 300 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~----------eg---~L~--------~~LldRf~l~v~v~~p~~ 300 (603)
..|-.+|+.|. ...|.++++.||+|.. ++ ++- -.|-|||++.+.+. |.+
T Consensus 158 K~LKs~LeG~v---------e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~-~~~ 227 (287)
T COG2607 158 KALKSALEGGV---------EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFY-PCD 227 (287)
T ss_pred HHHHHHhcCCc---------ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeeccc-CCC
Confidence 45555565432 2358899999999962 11 222 24778999998876 778
Q ss_pred HHHHHHHHH
Q 007444 301 FEDRVAAVG 309 (603)
Q Consensus 301 ~e~r~eI~~ 309 (603)
.++-..|++
T Consensus 228 Q~~YL~~V~ 236 (287)
T COG2607 228 QDEYLKIVD 236 (287)
T ss_pred HHHHHHHHH
Confidence 776666654
No 222
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.67 E-value=2.3e-07 Score=109.53 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (603)
....+.+|+.+ .+|+||.|.||+|||+++.+||+..+
T Consensus 1532 Nl~rVlRAmqv------~kpilLEGsPGVGKTSlItaLAr~tG------------------------------------- 1568 (4600)
T COG5271 1532 NLRRVLRAMQV------GKPILLEGSPGVGKTSLITALARKTG------------------------------------- 1568 (4600)
T ss_pred hHHHHHHHHhc------CCceeecCCCCccHHHHHHHHHHHhc-------------------------------------
Confidence 33445555544 57999999999999999999999864
Q ss_pred ccccCCCeEEc--CCCCccccccccc-cchhccccCcccccccch--hcccCceEEecccccCCHHHHHHHHHHHHcCc-
Q 007444 179 TQIARSPFVQI--PLGVTEDRLIGSV-DVEESVKTGTTVFQPGLL--AEAHRGVLYIDEINLLDEGISNLLLNVLTEGV- 252 (603)
Q Consensus 179 ~~~~~~pfv~l--~~~~~~~~l~G~l-dl~~~l~~g~~~~~~Gll--~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~- 252 (603)
..++.+ +..+..-.|||+- -++ ..|...+....+ +.-+||++++||+|+.+..++..|..+++.+.
T Consensus 1569 -----~kliRINLSeQTdL~DLfGsd~Pve---~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~e 1640 (4600)
T COG5271 1569 -----KKLIRINLSEQTDLCDLFGSDLPVE---EGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRRE 1640 (4600)
T ss_pred -----CceEEeeccccchHHHHhCCCCCcc---cCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccc
Confidence 234443 3334445788862 111 335555543333 34489999999999999999999999998643
Q ss_pred eeEeeCCeeeEecCCcEEEEEeCCCCC-----CccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 253 NIVEREGISFKHPCKPLLIATYNPEEG-----VVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp~eg-----~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
..|..-..++....+|.|+||.||... -|+..+++||... .++. ...+....|.
T Consensus 1641 ayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV-~~d~-lt~dDi~~Ia 1699 (4600)
T COG5271 1641 AYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVV-KMDG-LTTDDITHIA 1699 (4600)
T ss_pred cccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheE-Eecc-cccchHHHHH
Confidence 334444556666669999999999652 4889999999876 6663 3445444443
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=3.5e-08 Score=88.50 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..+++|+||+|||||++++.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 367999999999999999999998853
No 224
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.61 E-value=4.4e-07 Score=93.09 Aligned_cols=160 Identities=15% Similarity=0.060 Sum_probs=103.1
Q ss_pred CCCccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 79 AASEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 79 ~~~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
+..+.++..++++-.+.+++++++++.-+.--.-.++..|+|+|||||||||+...+.+..+.. .+
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~-----------~~--- 90 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYS-----------PH--- 90 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcC-----------CC---
Confidence 3456778888999999999999999998854344456779999999999999999999988741 00
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCC
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD 237 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~ 237 (603)
+.....+-.+++.++-.+.+ ......-....++-+++. +.-..+++||.+.+.
T Consensus 91 ------------------------~~~~m~lelnaSd~rgid~v--r~qi~~fast~~~~~fst~~~fKlvILDEADaMT 144 (360)
T KOG0990|consen 91 ------------------------PTTSMLLELNASDDRGIDPV--RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT 144 (360)
T ss_pred ------------------------CchhHHHHhhccCccCCcch--HHHHHHHHhhccceeccccCceeEEEecchhHhh
Confidence 01111123334444444421 000000111112223333 223588999999999
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccc
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~ 292 (603)
.+.|++|-++++.... +++++--.| -...+.+++..||...
T Consensus 145 ~~AQnALRRviek~t~-------------n~rF~ii~n-~~~ki~pa~qsRctrf 185 (360)
T KOG0990|consen 145 RDAQNALRRVIEKYTA-------------NTRFATISN-PPQKIHPAQQSRCTRF 185 (360)
T ss_pred HHHHHHHHHHHHHhcc-------------ceEEEEecc-ChhhcCchhhcccccC
Confidence 9999999998776542 334443445 5567788999987655
No 225
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.59 E-value=4.6e-07 Score=97.34 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=128.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
...++++.||+|||||.++.+|..... | ..+ .-.+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a-----------~----------------------------~sG------~f~T 242 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVI-----------L----------------------------ISG------GTIT 242 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHH-----------H----------------------------HcC------CcCc
Confidence 357899999999999999998875510 0 011 1234
Q ss_pred cccccccccchhccccCcccccccchhcccCceEEecccccCC----HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEE
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~----~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~l 270 (603)
...|+..+ .+ -+.|.+... -+|+|||+..++ .+.+..|.+.|++|. ++|.+.+..-.+.+++
T Consensus 243 ~a~Lf~~L------~~----~~lg~v~~~--DlLI~DEvgylp~~~~~~~v~imK~yMesg~--fsRG~~~~~a~as~vf 308 (449)
T TIGR02688 243 VAKLFYNI------ST----RQIGLVGRW--DVVAFDEVATLKFAKPKELIGILKNYMESGS--FTRGDETKSSDASFVF 308 (449)
T ss_pred HHHHHHHH------HH----HHHhhhccC--CEEEEEcCCCCcCCchHHHHHHHHHHHHhCc--eeccceeeeeeeEEEE
Confidence 45566542 11 233455444 499999999863 457889999999998 7887766666677888
Q ss_pred EEEeCCC-C-------------CCc-cHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHH
Q 007444 271 IATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (603)
Q Consensus 271 IattNp~-e-------------g~L-~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~ 335 (603)
+|-.|.. + ..+ +.+|+|||...+ +.. + |.+.. ++-|...|.-..+-+.+.
T Consensus 309 vGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~yi--PGW---e----ipk~~------~e~~t~~yGl~~DylsE~ 373 (449)
T TIGR02688 309 LGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGYL--PGW---E----IPKIR------KEMFSNGYGFVVDYFAEA 373 (449)
T ss_pred EcccCCcchhhcCcccccccCChhhhhhHHHHhhhccC--CCC---c----CccCC------HHHcccCCcchHHHHHHH
Confidence 8876631 1 112 358999987653 221 1 11111 111222222222222333
Q ss_pred HHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCcc
Q 007444 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 336 I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (603)
+...| ....++. +..+..-++..+.|....+-++..++..+ .-...++.+|+++.+++++.-|++
T Consensus 374 l~~lR----~~~~~~~----~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rrr 439 (449)
T TIGR02688 374 LRELR----EREYADI----VDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQR 439 (449)
T ss_pred HHHHH----hhHHHHh----hhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 32222 1122222 22222223344789999999888888876 556679999999999999998865
No 226
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.58 E-value=5.4e-07 Score=85.84 Aligned_cols=153 Identities=19% Similarity=0.183 Sum_probs=85.6
Q ss_pred ccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC--CCcccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC--PDEWEDGLDEKAEYDTAG 175 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~--~~~~~~~~~~~i~~~~~~ 175 (603)
||+.++..|.-..-+-...| +||+||+|+||+++|++++..+- |.... +..-|..|.. +.. .
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll-----------~~~~~~~~c~~c~~c~~-~~~--~- 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL-----------CSNPNEDPCGECRSCRR-IEE--G- 65 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC------------TT-CTT--SSSHHHHH-HHT--T-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc-----------CCCCCCCCCCCCHHHHH-HHh--c-
Confidence 78989988865554444455 79999999999999999998863 33322 2223333332 110 0
Q ss_pred cccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeE
Q 007444 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (603)
Q Consensus 176 ~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v 255 (603)
....|+.+...-. .+-++--++. .+.. .+.-.. ..+..-|++|||++.|..+.+++||..||+.-
T Consensus 66 ------~~~d~~~~~~~~~-~~~i~i~~ir-~i~~---~~~~~~-~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp--- 130 (162)
T PF13177_consen 66 ------NHPDFIIIKPDKK-KKSIKIDQIR-EIIE---FLSLSP-SEGKYKVIIIDEADKLTEEAQNALLKTLEEPP--- 130 (162)
T ss_dssp -------CTTEEEEETTTS-SSSBSHHHHH-HHHH---HCTSS--TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT---
T ss_pred ------cCcceEEEecccc-cchhhHHHHH-HHHH---HHHHHH-hcCCceEEEeehHhhhhHHHHHHHHHHhcCCC---
Confidence 1333444322111 0011111111 0000 000000 11234599999999999999999999999853
Q ss_pred eeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccc
Q 007444 256 EREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (603)
Q Consensus 256 ~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~ 292 (603)
.++.+|.+++ ....+.+.+.+|.-..
T Consensus 131 ----------~~~~fiL~t~-~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 131 ----------ENTYFILITN-NPSKILPTIRSRCQVI 156 (162)
T ss_dssp ----------TTEEEEEEES--GGGS-HHHHTTSEEE
T ss_pred ----------CCEEEEEEEC-ChHHChHHHHhhceEE
Confidence 3566677776 7788889999997554
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.57 E-value=3.9e-07 Score=95.58 Aligned_cols=163 Identities=20% Similarity=0.107 Sum_probs=94.7
Q ss_pred cccccHHHHHHHHHhhh-ccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTALLLGAI-DREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav-~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
+++|++.+...+..... .....| +||+||||||||++|.++++.+....... +. +..-|..|.....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~-----~~---~~~~~~~~~~~~~--- 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTG-----LL---PCGHCRSCKLIPA--- 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCccc-----CC---cccchhhhhHHhh---
Confidence 57788877777765555 334667 99999999999999999999874211100 00 0000011111000
Q ss_pred cccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCce
Q 007444 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~ 253 (603)
.....|+.+..+.....-+..-.+........ ..+. ....-|++|||++.|..+.++.|+..+++..
T Consensus 71 -------~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~---~~~~--~~~~kviiidead~mt~~A~nallk~lEep~- 137 (325)
T COG0470 71 -------GNHPDFLELNPSDLRKIDIIVEQVRELAEFLS---ESPL--EGGYKVVIIDEADKLTEDAANALLKTLEEPP- 137 (325)
T ss_pred -------cCCCceEEecccccCCCcchHHHHHHHHHHhc---cCCC--CCCceEEEeCcHHHHhHHHHHHHHHHhccCC-
Confidence 01234555443322211011100111111000 0000 2233599999999999999999999999754
Q ss_pred eEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccccc
Q 007444 254 IVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~ 296 (603)
.+..+|.++| ....+.+.+.+|.... .+.
T Consensus 138 ------------~~~~~il~~n-~~~~il~tI~SRc~~i-~f~ 166 (325)
T COG0470 138 ------------KNTRFILITN-DPSKILPTIRSRCQRI-RFK 166 (325)
T ss_pred ------------CCeEEEEEcC-Chhhccchhhhcceee-ecC
Confidence 3567788888 7888888999998766 554
No 228
>PRK04132 replication factor C small subunit; Provisional
Probab=98.52 E-value=1.2e-06 Score=102.18 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=84.3
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHH
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r 304 (603)
..|+||||++.|+.+.|+.|+..|++-. .++.+|.++| ....+.++|.+|+... .+. |++.++.
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~-------------~~~~FILi~N-~~~kIi~tIrSRC~~i-~F~-~ls~~~i 694 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFS-------------SNVRFILSCN-YSSKIIEPIQSRCAIF-RFR-PLRDEDI 694 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCC-------------CCeEEEEEeC-ChhhCchHHhhhceEE-eCC-CCCHHHH
Confidence 3599999999999999999999999732 2456778888 5567779999997655 676 4455544
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH
Q 007444 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (603)
Q Consensus 305 ~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal 384 (603)
.+.+... .. + ..+.++++++..|+..+ +. +.|..+++++.+.. .
T Consensus 695 ~~~L~~I-------------------------~~-~---Egi~i~~e~L~~Ia~~s---~G-DlR~AIn~Lq~~~~---~ 738 (846)
T PRK04132 695 AKRLRYI-------------------------AE-N---EGLELTEEGLQAILYIA---EG-DMRRAINILQAAAA---L 738 (846)
T ss_pred HHHHHHH-------------------------HH-h---cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---h
Confidence 4333321 11 1 14678999888887664 33 57999999876543 2
Q ss_pred cCCCCCcHHHHHHHH
Q 007444 385 EGREKVNVDDLKKAV 399 (603)
Q Consensus 385 ~gr~~Vt~eDv~~A~ 399 (603)
. ..|+.++|..++
T Consensus 739 ~--~~It~~~V~~~~ 751 (846)
T PRK04132 739 D--DKITDENVFLVA 751 (846)
T ss_pred c--CCCCHHHHHHHh
Confidence 2 468888877553
No 229
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.3e-06 Score=90.66 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=87.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC---CCCcccccccccccccccccccccccCCCeEEcCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV 193 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~ 193 (603)
+.+||.||+|+||+++|+.+++.+ +|.-. .+..-|..|..... + .+..+..+...-
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~----g------~HPD~~~i~~~~ 81 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAAL-----------LCEAPQGGGACGSCKGCQLLRA----G------SHPDNFVLEPEE 81 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhc----C------CCCCEEEEeccC
Confidence 459999999999999999999986 45321 22233444433110 0 123344332210
Q ss_pred ccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEE
Q 007444 194 TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIAT 273 (603)
Q Consensus 194 ~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIat 273 (603)
. ..-++.-++.. +.+ .....| ..+..-|++||+++.|+...+|.||..|++- |.++++|.+
T Consensus 82 ~-~~~i~id~iR~-l~~-~~~~~~---~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~ 142 (328)
T PRK05707 82 A-DKTIKVDQVRE-LVS-FVVQTA---QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLI 142 (328)
T ss_pred C-CCCCCHHHHHH-HHH-HHhhcc---ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEE
Confidence 0 01122111111 100 000001 1223459999999999999999999999974 234566666
Q ss_pred eCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 274 YNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 274 tNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
|+ ....+.+.+++|+... .+. |++.++..+.+
T Consensus 143 t~-~~~~ll~TI~SRc~~~-~~~-~~~~~~~~~~L 174 (328)
T PRK05707 143 SH-QPSRLLPTIKSRCQQQ-ACP-LPSNEESLQWL 174 (328)
T ss_pred EC-ChhhCcHHHHhhceee-eCC-CcCHHHHHHHH
Confidence 66 5666889999999875 776 55666544443
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=3.2e-06 Score=89.79 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHH
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r 304 (603)
.-|++||++++|.....|.||..||+- |.+.++|.+++ ....|.+.+++|+-.. .+. |++.++.
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-~~~~LLpTI~SRcq~i-~~~-~~~~~~~ 196 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSA-RIDRLLPTILSRCRQF-PMT-VPAPEAA 196 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEEC-ChhhCcHHHHhcCEEE-Eec-CCCHHHH
Confidence 359999999999999999999999974 33556666666 6788889999999544 776 5566655
Q ss_pred HHHH
Q 007444 305 VAAV 308 (603)
Q Consensus 305 ~eI~ 308 (603)
.+.+
T Consensus 197 ~~~L 200 (342)
T PRK06964 197 AAWL 200 (342)
T ss_pred HHHH
Confidence 5444
No 231
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.41 E-value=4.8e-06 Score=83.86 Aligned_cols=138 Identities=22% Similarity=0.202 Sum_probs=81.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
..+..++||.|||||.+++.++..+++.-+ .|||++.- .+ ...
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~----vfnc~~~~---------------------------~~------~~l 74 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVV----VFNCSEQM---------------------------DY------QSL 74 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EE----EEETTSSS----------------------------H------HHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEE----Eecccccc---------------------------cH------HHH
Confidence 345678999999999999999999864222 25553210 00 011
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHH-------HHHHHcCceeEeeCCeeeEecCCc
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPCKP 268 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~L-------L~~l~~g~~~v~r~G~s~~~p~~~ 268 (603)
.+++- |+.. .|.++++||+|+++.+++..+ .+++.++...+.-+|..+....++
T Consensus 75 ~ril~-----------------G~~~--~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~ 135 (231)
T PF12774_consen 75 SRILK-----------------GLAQ--SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNC 135 (231)
T ss_dssp HHHHH-----------------HHHH--HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-
T ss_pred HHHHH-----------------HHhh--cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccce
Confidence 12221 2222 366999999999998876555 445556666677789999988889
Q ss_pred EEEEEeCCCC---CCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 269 LLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 269 ~lIattNp~e---g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
.++.|+||.- .+|++.|..-|--. .+.. ||.....|++-..
T Consensus 136 ~iFiT~np~y~gr~~LP~nLk~lFRpv-am~~-PD~~~I~ei~L~s 179 (231)
T PF12774_consen 136 GIFITMNPGYAGRSELPENLKALFRPV-AMMV-PDLSLIAEILLLS 179 (231)
T ss_dssp EEEEEE-B-CCCC--S-HHHCTTEEEE-E--S---HHHHHHHHHHC
T ss_pred eEEEeeccccCCcccCCHhHHHHhhee-EEeC-CCHHHHHHHHHHH
Confidence 9999999853 36777776666544 5553 4777666665433
No 232
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.41 E-value=3.6e-06 Score=86.93 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=53.5
Q ss_pred cCceEEecccccCCH------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCC--ccHHHHhhhcccccc
Q 007444 224 HRGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VREHLLDRIAINLSA 295 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~--L~~~LldRf~l~v~v 295 (603)
+.-|+|||++|.-.. ...+.|.+.++.|-. ..++......=.++.+||+|||..|. +++-|++.|.+. .+
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~-yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~-~~ 177 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGF-YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNIL-NI 177 (272)
T ss_dssp SEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEE-ECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEE-E-
T ss_pred cEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCc-ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEE-Ee
Confidence 345999999998643 356778888887652 34444454444578999999986653 778888888866 67
Q ss_pred cCCCCHHHHHHHHHH
Q 007444 296 DLPMTFEDRVAAVGI 310 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~ 310 (603)
+.| +.+....|..-
T Consensus 178 ~~p-~~~sl~~If~~ 191 (272)
T PF12775_consen 178 PYP-SDESLNTIFSS 191 (272)
T ss_dssp ----TCCHHHHHHHH
T ss_pred cCC-ChHHHHHHHHH
Confidence 644 56666666543
No 233
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3.8e-06 Score=88.45 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=90.7
Q ss_pred cHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 007444 100 QDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (603)
Q Consensus 100 q~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (603)
++.++..|.-+.-.....| +||+||+|+||+++|.+++..+ .|....+..-|..|.-.. .+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L-----------lC~~~~~~~~c~~c~~~~----~g--- 70 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV-----------LASGPDPAAAQRTRQLIA----AG--- 70 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH-----------hCCCCCCCCcchHHHHHh----cC---
Confidence 3455555544333223344 9999999999999999999876 343222222344443211 00
Q ss_pred ccccCCCeEEc--CCCCccc---cccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCce
Q 007444 179 TQIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (603)
Q Consensus 179 ~~~~~~pfv~l--~~~~~~~---~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~ 253 (603)
.+..|..+ .+.-... .-++ +|--+.+.+ .....| ..+..-|++||+++.|+...+|.||..||+--
T Consensus 71 ---~HPD~~~i~~~p~~~~~k~~~~I~-idqIR~l~~-~~~~~p---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp- 141 (319)
T PRK08769 71 ---THPDLQLVSFIPNRTGDKLRTEIV-IEQVREISQ-KLALTP---QYGIAQVVIVDPADAINRAACNALLKTLEEPS- 141 (319)
T ss_pred ---CCCCEEEEecCCCccccccccccc-HHHHHHHHH-HHhhCc---ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-
Confidence 12234333 1111000 0111 110000000 000000 01123599999999999999999999999852
Q ss_pred eEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 254 IVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
.+..+|-+++ ....+.+.+.+|+... .+. +++.++-.+.
T Consensus 142 ------------~~~~fiL~~~-~~~~lLpTIrSRCq~i-~~~-~~~~~~~~~~ 180 (319)
T PRK08769 142 ------------PGRYLWLISA-QPARLPATIRSRCQRL-EFK-LPPAHEALAW 180 (319)
T ss_pred ------------CCCeEEEEEC-ChhhCchHHHhhheEe-eCC-CcCHHHHHHH
Confidence 3455666666 5667889999999776 666 3455544333
No 234
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=4.3e-06 Score=88.18 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC---CCccccccccccccccccc
Q 007444 101 DAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDEWEDGLDEKAEYDTAGN 176 (603)
Q Consensus 101 ~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~---~~~~~~~~~~~i~~~~~~~ 176 (603)
...+..|.-+.-... .+.+||.||.|+||+++|+.+++.+ +|.... +..-|..|..... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~----g- 71 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL-----------MCQTPQGDQPCGQCHSCHLFQA----G- 71 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhc----C-
Confidence 344444443332222 3458899999999999999999876 463322 2233444443211 1
Q ss_pred ccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEe
Q 007444 177 LKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (603)
Q Consensus 177 ~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~ 256 (603)
.+..|..+... +..-+|.-++. .+... ....| ......|++||+++.|+...+|+||..||+--
T Consensus 72 -----~HPD~~~i~p~--~~~~I~id~iR-~l~~~-~~~~~---~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp---- 135 (325)
T PRK06871 72 -----NHPDFHILEPI--DNKDIGVDQVR-EINEK-VSQHA---QQGGNKVVYIQGAERLTEAAANALLKTLEEPR---- 135 (325)
T ss_pred -----CCCCEEEEccc--cCCCCCHHHHH-HHHHH-Hhhcc---ccCCceEEEEechhhhCHHHHHHHHHHhcCCC----
Confidence 13334444221 11112211111 11000 00000 11234599999999999999999999999853
Q ss_pred eCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 257 REGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 257 r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
.+.++|-+++ ....+.+.+++|.-.. .+. |+..++..+.+
T Consensus 136 ---------~~~~fiL~t~-~~~~llpTI~SRC~~~-~~~-~~~~~~~~~~L 175 (325)
T PRK06871 136 ---------PNTYFLLQAD-LSAALLPTIYSRCQTW-LIH-PPEEQQALDWL 175 (325)
T ss_pred ---------CCeEEEEEEC-ChHhCchHHHhhceEE-eCC-CCCHHHHHHHH
Confidence 3555666665 5677888999998766 665 44555444443
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=8.3e-06 Score=91.51 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHH----------h----hh----------------ccC----CCcEEEECCCCChH
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLL----------G----AI----------------DRE----IGGIAISGRRGTAK 129 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l----------a----av----------------~p~----~~gVLL~GppGTGK 129 (603)
=+..++++..|.+++|.+..-++++. . .. +|. .+=+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 34556899999999999987776631 0 00 111 12299999999999
Q ss_pred HHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccccccccc--chhc
Q 007444 130 TVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD--VEES 207 (603)
Q Consensus 130 T~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ld--l~~~ 207 (603)
||||+.+|+..+ ..+++++ +++++=.-.+. ++.+
T Consensus 340 TTLAHViAkqaG------------------------------------------YsVvEIN--ASDeRt~~~v~~kI~~a 375 (877)
T KOG1969|consen 340 TTLAHVIAKQAG------------------------------------------YSVVEIN--ASDERTAPMVKEKIENA 375 (877)
T ss_pred hHHHHHHHHhcC------------------------------------------ceEEEec--ccccccHHHHHHHHHHH
Confidence 999999998753 2233332 33332211110 0111
Q ss_pred cccCcccccccch-hcccCceEEecccccCCHHHHHHHHHHHHcCc-eeEeeCCeee--EecCC-----cEEEEEeCCCC
Q 007444 208 VKTGTTVFQPGLL-AEAHRGVLYIDEINLLDEGISNLLLNVLTEGV-NIVEREGISF--KHPCK-----PLLIATYNPEE 278 (603)
Q Consensus 208 l~~g~~~~~~Gll-~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~-~~v~r~G~s~--~~p~~-----~~lIattNp~e 278 (603)
++. ...+ +..+...|+||||+-.+...++.|+..+.... ......+... +-..+ -=+|+-+| +-
T Consensus 376 vq~------~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN-dL 448 (877)
T KOG1969|consen 376 VQN------HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN-DL 448 (877)
T ss_pred Hhh------ccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec-Cc
Confidence 111 1122 22345689999999999999999999887321 1111111000 00000 01677777 32
Q ss_pred CCccHHHH--hhhcccccccCCCCHHHHH
Q 007444 279 GVVREHLL--DRIAINLSADLPMTFEDRV 305 (603)
Q Consensus 279 g~L~~~Ll--dRf~l~v~v~~p~~~e~r~ 305 (603)
+-|+|. .-|+.+|.+. |+.....+
T Consensus 449 --YaPaLR~Lr~~A~ii~f~-~p~~s~Lv 474 (877)
T KOG1969|consen 449 --YAPALRPLRPFAEIIAFV-PPSQSRLV 474 (877)
T ss_pred --cchhhhhcccceEEEEec-CCChhHHH
Confidence 234444 3577777776 45555444
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=1.2e-05 Score=81.12 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=128.0
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..++++..|+.+.++++....|.........-|+|+|||.|+||-|.+.+|-+.+-+..+..--. +-..|...-
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki------~~~t~~tpS 77 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI------ETRTFTTPS 77 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee------eeEEEecCC
Confidence 34678899999999998888776544433467999999999999999998887775422110000 000010000
Q ss_pred cccccccccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccccccchhccc--CceEEecccccCCHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEAH--RGVLYIDEINLLDEGIS 241 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~--~gIL~IDEi~~l~~~~~ 241 (603)
..+++ +.+. .....+++.++- ..|+.+=. ++-+.+.... -+..... -.+++|.|+|.|..+.|
T Consensus 78 ~kklE------istv-sS~yHlEitPSDaG~~DRvViQ-ellKevAQt~-----qie~~~qr~fKvvvi~ead~LT~dAQ 144 (351)
T KOG2035|consen 78 KKKLE------ISTV-SSNYHLEITPSDAGNYDRVVIQ-ELLKEVAQTQ-----QIETQGQRPFKVVVINEADELTRDAQ 144 (351)
T ss_pred CceEE------EEEe-cccceEEeChhhcCcccHHHHH-HHHHHHHhhc-----chhhccccceEEEEEechHhhhHHHH
Confidence 00000 0000 111222222211 11111110 0111111111 0111111 24899999999999999
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
.+|.+.|+.-. .++.+|..+| .-..+-+++..|.-+. .++.| +.++...++..+..
T Consensus 145 ~aLRRTMEkYs-------------~~~RlIl~cn-s~SriIepIrSRCl~i-Rvpap-s~eeI~~vl~~v~~-------- 200 (351)
T KOG2035|consen 145 HALRRTMEKYS-------------SNCRLILVCN-STSRIIEPIRSRCLFI-RVPAP-SDEEITSVLSKVLK-------- 200 (351)
T ss_pred HHHHHHHHHHh-------------cCceEEEEec-CcccchhHHhhheeEE-eCCCC-CHHHHHHHHHHHHH--------
Confidence 99999999654 2567888888 6677789999996444 67766 45555445443221
Q ss_pred hhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara 380 (603)
++ ...++.+.+..+++- .+. .+|..+.++++++.
T Consensus 201 ------------------kE---~l~lp~~~l~rIa~k---S~~-nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 201 ------------------KE---GLQLPKELLKRIAEK---SNR-NLRRALLMLEAVRV 234 (351)
T ss_pred ------------------Hh---cccCcHHHHHHHHHH---hcc-cHHHHHHHHHHHHh
Confidence 11 356777776666554 343 57888888766653
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.27 E-value=1.1e-05 Score=83.29 Aligned_cols=227 Identities=21% Similarity=0.160 Sum_probs=122.8
Q ss_pred cccccHHHHHHHH-H-h-hhcc---CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 96 AVVGQDAIKTALL-L-G-AIDR---EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 96 ~IvGq~~~k~aL~-l-a-av~p---~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
.-||...++.+|. + . ...| ...++||+|++|.|||++++.+...-|.. .+++
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---------~d~~------------- 92 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ---------SDED------------- 92 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC---------CCCC-------------
Confidence 3588888888882 1 1 2234 33559999999999999999999876531 0000
Q ss_pred cccccccccccccCCC--eEEcCCCCccccccccccchhccccCccc----------c-cccchhcccCceEEecccccC
Q 007444 170 EYDTAGNLKTQIARSP--FVQIPLGVTEDRLIGSVDVEESVKTGTTV----------F-QPGLLAEAHRGVLYIDEINLL 236 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~p--fv~l~~~~~~~~l~G~ldl~~~l~~g~~~----------~-~~Gll~~A~~gIL~IDEi~~l 236 (603)
. ...| +++.|...++.++...+= ..+ |... . .-.+|..-.-.+|+|||++.+
T Consensus 93 -----~------~~~PVv~vq~P~~p~~~~~Y~~IL--~~l--gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 93 -----A------ERIPVVYVQMPPEPDERRFYSAIL--EAL--GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred -----C------ccccEEEEecCCCCChHHHHHHHH--HHh--CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 0 1234 566788888887776531 111 1110 0 013444444569999999986
Q ss_pred ---CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHH
Q 007444 237 ---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (603)
Q Consensus 237 ---~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~ 312 (603)
+..-|..+++++..=-+ . ....++.+||..-. .-.-+++|-+||... .++.....++- ..+..
T Consensus 158 LaGs~~~qr~~Ln~LK~L~N-------e--L~ipiV~vGt~~A~~al~~D~QLa~RF~~~-~Lp~W~~d~ef---~~LL~ 224 (302)
T PF05621_consen 158 LAGSYRKQREFLNALKFLGN-------E--LQIPIVGVGTREAYRALRTDPQLASRFEPF-ELPRWELDEEF---RRLLA 224 (302)
T ss_pred hcccHHHHHHHHHHHHHHhh-------c--cCCCeEEeccHHHHHHhccCHHHHhccCCc-cCCCCCCCcHH---HHHHH
Confidence 22233344443322110 0 11134566652211 113468999999887 55522111111 11111
Q ss_pred HHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCc
Q 007444 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVN 391 (603)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~-~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt 391 (603)
.|+ ..--.-..-.+.+ +...+|.+.+. +.+ =....++..|...|...|.+.||
T Consensus 225 s~e----------------------~~LPLr~~S~l~~~~la~~i~~~s~-G~i---G~l~~ll~~aA~~AI~sG~E~It 278 (302)
T PF05621_consen 225 SFE----------------------RALPLRKPSNLASPELARRIHERSE-GLI---GELSRLLNAAAIAAIRSGEERIT 278 (302)
T ss_pred HHH----------------------HhCCCCCCCCCCCHHHHHHHHHHcC-Cch---HHHHHHHHHHHHHHHhcCCceec
Confidence 121 1111111122443 44455554432 223 34567777888899999999999
Q ss_pred HHHHHHH
Q 007444 392 VDDLKKA 398 (603)
Q Consensus 392 ~eDv~~A 398 (603)
.+.+...
T Consensus 279 ~~~l~~~ 285 (302)
T PF05621_consen 279 REILDKI 285 (302)
T ss_pred HHHHhhC
Confidence 9999764
No 238
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.8e-05 Score=83.29 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC--CCCcccccccccccccccccc
Q 007444 101 DAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--CPDEWEDGLDEKAEYDTAGNL 177 (603)
Q Consensus 101 ~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~--~~~~~~~~~~~~i~~~~~~~~ 177 (603)
.+.+..|.-+.-... .+.+||.||.|+||+++|+.+++.+ +|.-. .+...|..|..... +
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l-----------lC~~~~~~~Cg~C~sC~~~~~----g-- 71 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL-----------LCQNYQSEACGFCHSCELMQS----G-- 71 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCHHHHHHHc----C--
Confidence 445555543322222 3449999999999999999999876 34321 22223444432111 1
Q ss_pred cccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEee
Q 007444 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (603)
Q Consensus 178 ~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r 257 (603)
.+..|..+.... ...-++.-.+. .+..- ....+ ..+..-|++||+++.|+...+|+||..+|+--
T Consensus 72 ----~HPD~~~i~p~~-~~~~I~vdqiR-~l~~~-~~~~~---~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp----- 136 (319)
T PRK06090 72 ----NHPDLHVIKPEK-EGKSITVEQIR-QCNRL-AQESS---QLNGYRLFVIEPADAMNESASNALLKTLEEPA----- 136 (319)
T ss_pred ----CCCCEEEEecCc-CCCcCCHHHHH-HHHHH-HhhCc---ccCCceEEEecchhhhCHHHHHHHHHHhcCCC-----
Confidence 133444443211 01112210110 01000 00000 11233599999999999999999999999853
Q ss_pred CCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHH
Q 007444 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVA 306 (603)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~e 306 (603)
.+.++|-.++ ....+-+.+.+|.... .+. |++.+...+
T Consensus 137 --------~~t~fiL~t~-~~~~lLpTI~SRCq~~-~~~-~~~~~~~~~ 174 (319)
T PRK06090 137 --------PNCLFLLVTH-NQKRLLPTIVSRCQQW-VVT-PPSTAQAMQ 174 (319)
T ss_pred --------CCeEEEEEEC-ChhhChHHHHhcceeE-eCC-CCCHHHHHH
Confidence 3455666666 6777888999998766 666 445554333
No 239
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.9e-05 Score=83.98 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhhc-cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc---cccccccccccccc
Q 007444 101 DAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---DGLDEKAEYDTAGN 176 (603)
Q Consensus 101 ~~~k~aL~laav~-p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~---~~~~~~i~~~~~~~ 176 (603)
+.....|.-+.-. .-.+.+||.||+|+||+++|+++++.+ .|........| ..|..... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L-----------lC~~~~~~~~Cg~C~sC~~~~~----g- 71 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL-----------MCQQPQGHKSCGHCRGCQLMQA----G- 71 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHHc----C-
Confidence 3444545333222 223458899999999999999999886 46322222234 44433110 1
Q ss_pred ccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEe
Q 007444 177 LKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVE 256 (603)
Q Consensus 177 ~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~ 256 (603)
.+..|..+.+... ..-++.-.+. .+.. .....| .++...|++||+++.|.....|.||..||+--
T Consensus 72 -----~HPD~~~i~p~~~-~~~I~idqiR-~l~~-~~~~~~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp---- 136 (334)
T PRK07993 72 -----THPDYYTLTPEKG-KSSLGVDAVR-EVTE-KLYEHA---RLGGAKVVWLPDAALLTDAAANALLKTLEEPP---- 136 (334)
T ss_pred -----CCCCEEEEecccc-cccCCHHHHH-HHHH-HHhhcc---ccCCceEEEEcchHhhCHHHHHHHHHHhcCCC----
Confidence 1233433322110 0112210000 1100 000011 12234599999999999999999999999853
Q ss_pred eCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHH
Q 007444 257 REGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVA 306 (603)
Q Consensus 257 r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~e 306 (603)
.+.++|-+++ ....|.+-+++|.... .+. |+..+...+
T Consensus 137 ---------~~t~fiL~t~-~~~~lLpTIrSRCq~~-~~~-~~~~~~~~~ 174 (334)
T PRK07993 137 ---------ENTWFFLACR-EPARLLATLRSRCRLH-YLA-PPPEQYALT 174 (334)
T ss_pred ---------CCeEEEEEEC-ChhhChHHHHhccccc-cCC-CCCHHHHHH
Confidence 3445555555 6778889999999865 666 445554333
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=2.1e-05 Score=83.29 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=90.4
Q ss_pred cHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC-C---CCcccccccccccccccc
Q 007444 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-C---PDEWEDGLDEKAEYDTAG 175 (603)
Q Consensus 100 q~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~-~---~~~~~~~~~~~i~~~~~~ 175 (603)
++.....+... ...-.+.+||+||+|+|||++|+.+++.+ +|... . +..-|..|.... ..
T Consensus 6 ~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~l-----------lC~~~~~~~~~Cg~C~~C~~~~---~~- 69 (325)
T PRK08699 6 HQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQAL-----------LCETPAPGHKPCGECMSCHLFG---QG- 69 (325)
T ss_pred cHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCcCHHHHHHh---cC-
Confidence 34445555433 22223449999999999999999999876 45322 1 222333343311 01
Q ss_pred cccccccCCCeEEcCCCCc-c--c---cccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH
Q 007444 176 NLKTQIARSPFVQIPLGVT-E--D---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 176 ~~~~~~~~~pfv~l~~~~~-~--~---~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
.+..|+.+..... + . .-++.-++ +.+.+.. ...| ..+...|++||+++.|+...++.|+..++
T Consensus 70 ------~HpD~~~~~p~~~~~~~g~~~~~I~id~i-R~l~~~~-~~~p---~~~~~kV~iiEp~~~Ld~~a~naLLk~LE 138 (325)
T PRK08699 70 ------SHPDFYEITPLSDEPENGRKLLQIKIDAV-REIIDNV-YLTS---VRGGLRVILIHPAESMNLQAANSLLKVLE 138 (325)
T ss_pred ------CCCCEEEEecccccccccccCCCcCHHHH-HHHHHHH-hhCc---ccCCceEEEEechhhCCHHHHHHHHHHHH
Confidence 1344655543211 0 0 00111011 1111000 0011 11335699999999999999999999999
Q ss_pred cCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 250 EGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 250 ~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
+.. ....+|.+++ ....+.+.+.+|+-.. .+. |++.++..+.
T Consensus 139 ep~-------------~~~~~Ilvth-~~~~ll~ti~SRc~~~-~~~-~~~~~~~~~~ 180 (325)
T PRK08699 139 EPP-------------PQVVFLLVSH-AADKVLPTIKSRCRKM-VLP-APSHEEALAY 180 (325)
T ss_pred hCc-------------CCCEEEEEeC-ChHhChHHHHHHhhhh-cCC-CCCHHHHHHH
Confidence 753 1234555555 4557778888888665 665 4455543333
No 241
>PRK08116 hypothetical protein; Validated
Probab=98.18 E-value=2.8e-06 Score=87.51 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=38.3
Q ss_pred cCceEEeccc--ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCC----ccHHHHhhh
Q 007444 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRI 289 (603)
Q Consensus 224 ~~gIL~IDEi--~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~----L~~~LldRf 289 (603)
+..+|+|||+ +...+..+..|+.+++.... . ...+|.|||....+ +...+++|+
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~----~--------~~~~IiTsN~~~~eL~~~~~~ri~sRl 237 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYR----K--------GLPTIVTTNLSLEELKNQYGKRIYDRI 237 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHH----C--------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 3469999999 55678888889998886531 1 22478888865544 456788886
No 242
>PRK12377 putative replication protein; Provisional
Probab=98.12 E-value=3.7e-06 Score=85.48 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=37.9
Q ss_pred cCceEEeccc--ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhc
Q 007444 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIA 290 (603)
Q Consensus 224 ~~gIL~IDEi--~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~ 290 (603)
+--+|+|||+ ...+...++.|..+++..... .--+|.|||.... .+...++||+-
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~------------~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTAS------------MRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhc------------CCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 3469999999 556777888999999876411 1235778886433 35567888874
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-05 Score=88.15 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=78.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
..++|||+|++|+|||.|++++.+++..-. ...+..++++..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--------------------------------------~~hv~~v~Cs~l 471 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL--------------------------------------IAHVEIVSCSTL 471 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc--------------------------------------ceEEEEEechhc
Confidence 457899999999999999999999874210 111222333332
Q ss_pred cccccccccchhccccCcccccccchhcccCceEEecccccCCH----------HHHHHHHHHHHcCceeEeeCCeeeEe
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE----------GISNLLLNVLTEGVNIVEREGISFKH 264 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~----------~~~~~LL~~l~~g~~~v~r~G~s~~~ 264 (603)
..+=+-.+ .+.+ ..++..++.. ...|++||+++.+-. ...+.|..++.+-...+. +.
T Consensus 472 ~~~~~e~i--Qk~l---~~vfse~~~~--~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------~~ 538 (952)
T KOG0735|consen 472 DGSSLEKI--QKFL---NNVFSEALWY--APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------KR 538 (952)
T ss_pred cchhHHHH--HHHH---HHHHHHHHhh--CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------cc
Confidence 22111111 0111 0011111111 357999999988722 122333333322111111 11
Q ss_pred cCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHHHHHHHHHH
Q 007444 265 PCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 265 p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
...+.+|||.+ +-..|.+-|.+ +|...+.+. +++..+|.+|+..
T Consensus 539 ~~~ia~Iat~q-e~qtl~~~L~s~~~Fq~~~~L~-ap~~~~R~~IL~~ 584 (952)
T KOG0735|consen 539 NRKIAVIATGQ-ELQTLNPLLVSPLLFQIVIALP-APAVTRRKEILTT 584 (952)
T ss_pred CcEEEEEEech-hhhhcChhhcCccceEEEEecC-CcchhHHHHHHHH
Confidence 12467899988 44445444443 899998888 5689999999874
No 244
>PRK06526 transposase; Provisional
Probab=98.04 E-value=4.1e-06 Score=85.62 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCCCCcccccHHHH-HHHH-HhhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQDAIK-TALL-LGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq~~~k-~aL~-laav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|+...+.+... ..|. +.-+ ....+|+|+||+|||||.|+.+|+..+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi-~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFV-TGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchh-hcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 35566655544322 2221 1112 245689999999999999999998765
No 245
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=98.03 E-value=4.7e-05 Score=85.00 Aligned_cols=187 Identities=19% Similarity=0.121 Sum_probs=106.3
Q ss_pred CCCCccccccccccchh---ccccCcccccccchhcccCceEEecccccCC-HHHHHHHHHHHHcCceeEeeCC---e--
Q 007444 190 PLGVTEDRLIGSVDVEE---SVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EGISNLLLNVLTEGVNIVEREG---I-- 260 (603)
Q Consensus 190 ~~~~~~~~l~G~ldl~~---~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~-~~~~~~LL~~l~~g~~~v~r~G---~-- 260 (603)
..+.+...|||.+.... .+.+.....+||.|.+||||+|+||--+.|. +.....|..+|..|.+.++..+ .
T Consensus 295 e~~Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~ 374 (509)
T PF13654_consen 295 EDNPTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSS 374 (509)
T ss_dssp -TT--HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSG
T ss_pred eCCCCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCC
Confidence 34456678999875433 1222334568999999999999999999997 5778999999999998887653 1
Q ss_pred -----eeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCC--CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhh
Q 007444 261 -----SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLP--MTFEDRVAAVGIATQFQERSNEVFKMVEEET 329 (603)
Q Consensus 261 -----s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p--~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~ 329 (603)
.-.+|.++-||..-+++. ..++++|..-|.+.++++.- .+.+.......
T Consensus 375 ~~~l~PepIpl~vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~-------------------- 434 (509)
T PF13654_consen 375 TVSLEPEPIPLDVKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRTEENIRQYAR-------------------- 434 (509)
T ss_dssp GGG-B-S-EE---EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE--HHHHHHHHH--------------------
T ss_pred CCCCCCCCcceEEEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCCHHHHHHHHH--------------------
Confidence 112455555544444443 35678899999888877632 12222111111
Q ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 330 DLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC----QGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 330 ~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v----~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
.|...-+...-..++.+++..|++++.+..- ........+++-|...|...|...|+.+||..|+..
T Consensus 435 -----~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 435 -----FIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp -----HHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred -----HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 1111111112236899999999999877521 122456788889999999999999999999999875
No 246
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=8.6e-05 Score=83.96 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=82.0
Q ss_pred EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC------
Q 007444 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG------ 192 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~------ 192 (603)
|||.|+||||||+++++++.++. .+++++++.
T Consensus 434 vLLhG~~g~GK~t~V~~vas~lg------------------------------------------~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTVVRAVASELG------------------------------------------LHLLEVDCYELVAES 471 (953)
T ss_pred EEEeCCCCCChHHHHHHHHHHhC------------------------------------------CceEeccHHHHhhcc
Confidence 99999999999999999999984 333333322
Q ss_pred --CccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEE
Q 007444 193 --VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (603)
Q Consensus 193 --~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~l 270 (603)
.++..|.-. +......+|-.|...|--++-||--+-.+-.++..+...+.... ..++.| ..++
T Consensus 472 ~~~~etkl~~~-------f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~-------~~~~~~-~~iv 536 (953)
T KOG0736|consen 472 ASHTETKLQAI-------FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNED-------FKFSCP-PVIV 536 (953)
T ss_pred cchhHHHHHHH-------HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhccc-------ccCCCC-ceEE
Confidence 233333221 11223334444444444444444444334445555554444111 111111 5789
Q ss_pred EEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 271 IATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 271 IattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
|+|++ ....+++.+..-|-..+.++. ++.++|.+|++....+
T Consensus 537 v~t~~-s~~~lp~~i~~~f~~ei~~~~-lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 537 VATTS-SIEDLPADIQSLFLHEIEVPA-LSEEQRLEILQWYLNH 578 (953)
T ss_pred EEecc-ccccCCHHHHHhhhhhccCCC-CCHHHHHHHHHHHHhc
Confidence 99998 555678888888877778875 4889999999876544
No 247
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.01 E-value=5.9e-05 Score=81.80 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=126.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
..-+++=.||+|||||.+=+-+... -+..-....|
T Consensus 207 ~N~NliELgPrGTGKS~vy~eiSp~---------------------------------------------~~liSGG~~T 241 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEISPY---------------------------------------------GILISGGQVT 241 (457)
T ss_pred cccceEEEcCCCCCceeehhhcCcc---------------------------------------------cEEEECCCcc
Confidence 3467999999999999985543211 1111223366
Q ss_pred cccccccccchhccccCcccccccchhcccCceEEecccccCC---HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEE
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~---~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lI 271 (603)
...||.. ...-+.|++..-+ ++.+|||..+. ++.+..|-+.|++|. +.|.+.+..-.+.++++
T Consensus 242 ~A~LFyn----------~~~~~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~--fsRG~~~i~a~as~vf~ 307 (457)
T PF13337_consen 242 VAKLFYN----------MSTGQIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGS--FSRGKEEINADASMVFV 307 (457)
T ss_pred hHHheee----------ccCCcceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccc--eeecccccccceeEEEE
Confidence 6777773 2233667776543 89999998773 666699999999998 77777666666666666
Q ss_pred EEeCCC-C-------------CCc-cHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHH
Q 007444 272 ATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (603)
Q Consensus 272 attNp~-e-------------g~L-~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I 336 (603)
|-.|.. + ..+ +.+|+|||...+. ...-+.-+.++ |...|.-..+-+.+.+
T Consensus 308 GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iP--GWeiPk~~~e~-------------~t~~~gl~~Dy~aE~l 372 (457)
T PF13337_consen 308 GNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIP--GWEIPKIRPEM-------------FTNGYGLIVDYFAEIL 372 (457)
T ss_pred cCcCCcchhccccchhhhhcCHHHHHHHHHhHhheecc--CccccccCHHH-------------ccCCceeeHHHHHHHH
Confidence 665521 1 112 4689999977642 11111111111 1122222222222222
Q ss_pred HHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCccC
Q 007444 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (603)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (603)
...|. ...++ .+..+..-++..+.|....+-+++.++..| .-...++.+|+++.+++++.-|.+.
T Consensus 373 ~~LR~----~~~~~----~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 373 HELRK----QSYSD----AVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred HHHHH----HHHHH----HHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 22222 11211 122222223444678888888888887765 3467899999999999999988764
No 248
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.98 E-value=6.7e-06 Score=101.12 Aligned_cols=132 Identities=21% Similarity=0.262 Sum_probs=100.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEE--cCCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQ--IPLGV 193 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~--l~~~~ 193 (603)
.-++||.||+|+|||.++..++.... ..++. .+..+
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g------------------------------------------~~~vrinnheht 477 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARATG------------------------------------------KNIVRINNHEHT 477 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHhc------------------------------------------cCceehhccccc
Confidence 35899999999999999999998863 23333 35556
Q ss_pred ccccccccccchhccccCcccccccchhcc--cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecC-CcEE
Q 007444 194 TEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC-KPLL 270 (603)
Q Consensus 194 ~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A--~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~-~~~l 270 (603)
....++|+. .+...|...++-|.+..| +|.++|+||+|+.+.+++++|.+++++.+-....++....++. +|++
T Consensus 478 d~qeyig~y---~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~l 554 (1856)
T KOG1808|consen 478 DLQEYIGTY---VADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFML 554 (1856)
T ss_pred hHHHHHHhh---hcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhh
Confidence 777889942 345568889999999888 6789999999999999999999999984333334444444433 6999
Q ss_pred EEEeCCCC-----CCccHHHHhhhccc
Q 007444 271 IATYNPEE-----GVVREHLLDRIAIN 292 (603)
Q Consensus 271 IattNp~e-----g~L~~~LldRf~l~ 292 (603)
++|-||.. ..+..+|.+||...
T Consensus 555 fatqn~~~~y~grk~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 555 FATQNPPGTYGGRKILSRALRNRFIEL 581 (1856)
T ss_pred hhhccCccccchhhhhhhcccccchhh
Confidence 99999742 34778888888665
No 249
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.91 E-value=8.8e-05 Score=83.55 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=110.9
Q ss_pred CCccccccccccchhccccCcccccccchhcccCceEEecccccC---CHHHHHHHHHHHHcCceeEeeCCeeeEecCCc
Q 007444 192 GVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKP 268 (603)
Q Consensus 192 ~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l---~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~ 268 (603)
.+|...||.. ...-++|++..-+ ++.+|||..+ +++.++.|-+.|++|. +.|.+.+..-.+.+
T Consensus 247 ~~T~A~LFyn----------~~~~~~GlVg~~D--~VaFDEva~i~f~d~d~v~imK~YM~sG~--FsRG~~~~~a~as~ 312 (675)
T TIGR02653 247 QTTVANLFYN----------MSTRQIGLVGMWD--VVAFDEVAGIEFKDKDGVQIMKDYMASGS--FARGKESIEGKASI 312 (675)
T ss_pred ccchhHeeEE----------cCCCceeEEeecc--EEEEeeccccccCCHHHHHHHHHHhhcCc--ccccccccccceeE
Confidence 3556666663 2233567765433 8899999875 5678889999999999 77877766666778
Q ss_pred EEEEEeCCC--------------CCCc--cHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHH
Q 007444 269 LLIATYNPE--------------EGVV--REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLA 332 (603)
Q Consensus 269 ~lIattNp~--------------eg~L--~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l 332 (603)
+++|-.|.. +..+ +.+|+|||...+ +. ++ |.+.+ ++-|...|.-..+-+
T Consensus 313 vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yi--PG---We----iPk~~------~e~~t~~yGl~~Dyl 377 (675)
T TIGR02653 313 VFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYI--PG---WE----IPKMR------PEYFTNRYGFIVDYL 377 (675)
T ss_pred EEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccC--cC---Cc----CccCC------HHHcccCCcchHHHH
Confidence 888877731 1233 458999997653 22 21 22111 111222232222233
Q ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCccC
Q 007444 333 KTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (603)
Q Consensus 333 ~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (603)
.+.+...| ...+++.+ ..+..-++..+.|....+.++...+..| .-...++.+|+++.+++++.-|++.
T Consensus 378 sE~l~~lR----~~~~~~~~----~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~RrrV 447 (675)
T TIGR02653 378 AEYMREMR----KRSFADAI----DRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRRRV 447 (675)
T ss_pred HHHHHHHH----hhhHHHHH----HhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33333322 22233222 2222223445789999998888888877 5567899999999999999988763
No 250
>PRK08181 transposase; Validated
Probab=97.88 E-value=1.9e-05 Score=81.30 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCCCCcccccHH-HHHHHHHh--hhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQDA-IKTALLLG--AIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq~~-~k~aL~la--av~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.|.|+...+.+. ...+|..+ -+. ...+|+|+||+|||||.|+.+++..+
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~-~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA-KGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh-cCceEEEEecCCCcHHHHHHHHHHHH
Confidence 355555554332 33334222 222 45679999999999999999999765
No 251
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.84 E-value=9.5e-05 Score=64.17 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=49.9
Q ss_pred ccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 345 ~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
.+.++++....|-..+..+++ |.|....++++|+++|.|+|.+.|+.+||.+|+.|
T Consensus 40 ~~~l~~~~~~~l~~~~~~~~l-S~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 40 YCPLSSEAKKLLEQAAEKLNL-SARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred HcCCCHHHHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 357888888877777777776 89999999999999999999999999999999876
No 252
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.4e-05 Score=83.01 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=82.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
...|||.||||+|||+||--++... +.|||.+ .+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S------------------------------------------~FPFvKi---iSp 572 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS------------------------------------------DFPFVKI---ISP 572 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc------------------------------------------CCCeEEE---eCh
Confidence 4559999999999999999988653 7889886 345
Q ss_pred ccccccccchhccccCcccccccchhcc---cCceEEecccccC----------CHHHHHHHHHHHHcCceeEeeCCeee
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL----------DEGISNLLLNVLTEGVNIVEREGISF 262 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~~l----------~~~~~~~LL~~l~~g~~~v~r~G~s~ 262 (603)
+.++|--.-++.. .-.+.+..| .-.||+||+|++| +.-++.+|+-++...- +-|.
T Consensus 573 e~miG~sEsaKc~------~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p----pkg~-- 640 (744)
T KOG0741|consen 573 EDMIGLSESAKCA------HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP----PKGR-- 640 (744)
T ss_pred HHccCccHHHHHH------HHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC----CCCc--
Confidence 5666643222211 112233333 2359999999987 2234445554444321 1111
Q ss_pred EecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 263 KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 263 ~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
+..+++||...+---.-.+++-|+-.+.|+.-...++..+++...-.|
T Consensus 641 ----kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~f 688 (744)
T KOG0741|consen 641 ----KLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIF 688 (744)
T ss_pred ----eEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCC
Confidence 466777776211111225677888888887555667777777654334
No 253
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.70 E-value=1.1e-05 Score=72.99 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+.++|+|++|+|||++++.+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 46799999999999999999998763
No 254
>PF13173 AAA_14: AAA domain
Probab=97.70 E-value=8.2e-05 Score=67.76 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|.|++|+||||+++.+++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998765
No 255
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.00017 Score=77.84 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=71.3
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccc----------c
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLS----------A 295 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~----------v 295 (603)
-++|+||+|.|...-+..|+.+.+=-. ....++++||-.| .-+|-|||-..+. +
T Consensus 258 ~llVlDEmD~L~tr~~~vLy~lFewp~----------lp~sr~iLiGiAN------slDlTdR~LprL~~~~~~~P~~l~ 321 (529)
T KOG2227|consen 258 LLLVLDEMDHLITRSQTVLYTLFEWPK----------LPNSRIILIGIAN------SLDLTDRFLPRLNLDLTIKPKLLV 321 (529)
T ss_pred EEEEechhhHHhhcccceeeeehhccc----------CCcceeeeeeehh------hhhHHHHHhhhhhhccCCCCceee
Confidence 488999999886555555544433221 1123688999888 3445555533222 2
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ll 375 (603)
..|++.++.++|+...+.- .+...+-+.+++.++.-+. +.-..+|.++.+.
T Consensus 322 F~PYTk~qI~~Il~~rl~~----------------------------~~t~~~~~~Aie~~ArKva-a~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 322 FPPYTKDQIVEILQQRLSE----------------------------ESTSIFLNAAIELCARKVA-APSGDLRKALDVC 372 (529)
T ss_pred ecCCCHHHHHHHHHHHHhc----------------------------ccccccchHHHHHHHHHhc-cCchhHHHHHHHH
Confidence 3488889888887654321 1122333355555554433 3334689999999
Q ss_pred HHHHHHHHHcCCC
Q 007444 376 RVAKCLAALEGRE 388 (603)
Q Consensus 376 r~Ara~Aal~gr~ 388 (603)
|-|-.+|..+++.
T Consensus 373 R~aiEI~E~e~r~ 385 (529)
T KOG2227|consen 373 RRAIEIAEIEKRK 385 (529)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888887765
No 256
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.63 E-value=0.00012 Score=64.74 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=33.5
Q ss_pred ceEEecccccCCHH----HHHHHHHHHHcCceeEeeCCeeeE---ecCCcEEEEEeC
Q 007444 226 GVLYIDEINLLDEG----ISNLLLNVLTEGVNIVEREGISFK---HPCKPLLIATYN 275 (603)
Q Consensus 226 gIL~IDEi~~l~~~----~~~~LL~~l~~g~~~v~r~G~s~~---~p~~~~lIattN 275 (603)
.++++||+...... ....|+++++.....+...+.... .. .-+||+|+|
T Consensus 51 ~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~-s~~vi~tsN 106 (107)
T PF00910_consen 51 PVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFN-SKLVIITSN 106 (107)
T ss_pred cEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccC-CCEEEEcCC
Confidence 58999999888754 677888888887766654443321 22 246777877
No 257
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.63 E-value=2.9e-05 Score=75.13 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
...+++|+|++|||||.||-+++..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 45789999999999999999999765
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=97.62 E-value=6.4e-05 Score=77.11 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCCCcccccHH-HHHHHH-HhhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQDA-IKTALL-LGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq~~-~k~aL~-laav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.|.|+...+.+. ....|. +..+ ....+|+|+||+|||||+|+.+|+..+
T Consensus 76 ~fd~~~~~~~~~~~i~~L~~~~~i-~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 76 EYDFTFATGAPQKQLQSLRSLSFI-ERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hcccccCCCCCHHHHHHHhcCCch-hcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 366666666543 333342 1122 235679999999999999999998764
No 259
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00078 Score=70.06 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHhhhccCCC-cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC---CCccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDEWEDGLDEKAEYDTA 174 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~-gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~---~~~~~~~~~~~i~~~~~ 174 (603)
.|..++..|.-+.-..... ..||+|+ +||+++|+.++..+ +|.... +..-|..|.....
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~~C~~i~~---- 68 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSL-----------FCEQKEGVLPCGHCRSCRLIEQ---- 68 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhc----
Confidence 4556666665544333333 4899995 68999999999876 353221 2223444443111
Q ss_pred ccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCcee
Q 007444 175 GNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (603)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~ 254 (603)
+ .+..|..+... ...++--++.. +... ....| ..+..-|++||++++|.....|.||..+++--
T Consensus 69 ~------~HPD~~~i~p~---~~~I~idqIR~-l~~~-~~~~p---~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-- 132 (290)
T PRK07276 69 G------EFSDVTVIEPQ---GQVIKTDTIRE-LVKN-FSQSG---YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-- 132 (290)
T ss_pred C------CCCCeeeecCC---CCcCCHHHHHH-HHHH-HhhCc---ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC--
Confidence 0 12333333221 11122111110 0000 00011 12344699999999999999999999999853
Q ss_pred EeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 255 VEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 255 v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
.+.++|-+++ ....+-+.+.+|.-.. .+. .+.+...+++
T Consensus 133 -----------~~t~~iL~t~-~~~~lLpTI~SRcq~i-~f~--~~~~~~~~~L 171 (290)
T PRK07276 133 -----------SEIYIFLLTN-DENKVLPTIKSRTQIF-HFP--KNEAYLIQLL 171 (290)
T ss_pred -----------CCeEEEEEEC-ChhhCchHHHHcceee-eCC--CcHHHHHHHH
Confidence 3455666665 5677888999998665 553 3444444443
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.57 E-value=9.6e-05 Score=75.08 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..+++|+|++|||||+|+.+|+..+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998873
No 261
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.56 E-value=0.00033 Score=78.85 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=91.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCCccHHHHhhhcccccccCCCCH
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~L~~~LldRf~l~v~v~~p~~~ 301 (603)
..||+|||++.|=..-|+.|..+.+--.. -.++.+||+-.|. -+..|..-.-.|+++.=-...|++.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----------~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth 578 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPTL----------KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTH 578 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCcC----------CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCH
Confidence 35999999999977667777776654321 0125566665552 2233444455688886333458898
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
.+..+|+..++.-. -.+..+++++++...... -...|..+.+++.|..+
T Consensus 579 ~qLq~Ii~~RL~~~------------------------------~~f~~~aielvarkVAav-SGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 579 EQLQEIISARLKGL------------------------------DAFENKAIELVARKVAAV-SGDARRALDICRRAAEI 627 (767)
T ss_pred HHHHHHHHHhhcch------------------------------hhcchhHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888876443210 135667777666543332 23678899999888888
Q ss_pred HHHcCC-------CCCcHHHHHHHHHHHcCC
Q 007444 382 AALEGR-------EKVNVDDLKKAVELVILP 405 (603)
Q Consensus 382 Aal~gr-------~~Vt~eDv~~A~~lvl~h 405 (603)
|.-... ..|++-|+.+|+.-++..
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 876554 568999999999887653
No 262
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.00034 Score=71.18 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=37.8
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHh
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~ 139 (603)
...+.+..|.+.......++.+..+ ..-|++.||+|||||+||.+++..
T Consensus 49 ~~~~~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 49 RDSRDTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hhhcCCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457777888888777766654443 357999999999999999998873
No 263
>PRK06921 hypothetical protein; Provisional
Probab=97.54 E-value=5.1e-05 Score=78.13 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...+++|+|++|||||.|+.+|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 356799999999999999999998763
No 264
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.48 E-value=0.00025 Score=68.00 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=30.4
Q ss_pred cCceEEecccccC---CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-CCCccHHHHhhhcc
Q 007444 224 HRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAI 291 (603)
Q Consensus 224 ~~gIL~IDEi~~l---~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~L~~~LldRf~l 291 (603)
+..+++||||..| .+...+.+..+|+... .+|+|-... ...+-..+..|=+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~----------------~vi~vv~~~~~~~~l~~i~~~~~~ 150 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDSNK----------------PVIGVVHKRSDNPFLEEIKRRPDV 150 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCTTS----------------EEEEE--SS--SCCHHHHHTTTTS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcCCC----------------cEEEEEecCCCcHHHHHHHhCCCc
Confidence 5569999999766 6788899999998554 467776644 33444555555333
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.48 E-value=6.9e-05 Score=79.41 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
...+++|+|++|||||.|+.+++..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999999999876
No 266
>PHA01747 putative ATP-dependent protease
Probab=97.47 E-value=0.00035 Score=73.67 Aligned_cols=87 Identities=23% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
.-+++=.||+|||||++-+-+....| +..-....|.
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp--------------------------------------------~~iSGG~~Tv 225 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFN--------------------------------------------FRYYTEPPTY 225 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCC--------------------------------------------ceeeCCCCch
Confidence 44688899999999999998876554 1112233556
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCC----HHHHHHHHHHHHcCceeEeeCCe
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGI 260 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~----~~~~~~LL~~l~~g~~~v~r~G~ 260 (603)
..||.. ...-+.|++..-+ ++++|||.... .+++..|.+.|++|. +.|.+.
T Consensus 226 A~LFyN----------~~t~~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~--FsRG~~ 280 (425)
T PHA01747 226 ANLVYD----------AKTNALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCV--WTRGAG 280 (425)
T ss_pred HHheEe----------cCCCceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcce--eecCCC
Confidence 666663 2233567776544 88999998863 578999999999998 677665
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.47 E-value=0.006 Score=68.53 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=42.9
Q ss_pred ccccccCCCCCCCCcccccHH----HHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 82 EDQDSYGRQFFPLAAVVGQDA----IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~----~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...+..++.|...++++-+.. ++..|.- ...+. ..-+||+||+||||||+++.|++++.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~-~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEE-MFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHH-HhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667788999999988774 3333332 22221 23478899999999999999999985
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00013 Score=74.64 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
...+++|+|+||||||.||-+|+..+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 67899999999999999999999886
No 269
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.43 E-value=0.00041 Score=68.50 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 97 VVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 97 IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
++|.+.....|.-..-......++|+||.|+|||+|++.+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 467787777775433333357899999999999999999999874
No 270
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.41 E-value=0.00027 Score=69.40 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.5
Q ss_pred CceEEecccccCCHHHHHHHHHHHHc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTE 250 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~ 250 (603)
..+|+|||+..++......|+..+..
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh
Confidence 45999999999999999999988776
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00052 Score=64.53 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
-.|+|.|+||+||||++.-++..|..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 46999999999999999999988753
No 272
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.002 Score=64.95 Aligned_cols=131 Identities=20% Similarity=0.144 Sum_probs=77.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCcc----HHHHhhhcccccccCCCCH
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR----EHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~----~~LldRf~l~v~v~~p~~~ 301 (603)
-++++||.+.+..+....|..+.+--. ++. -+-.+++||=....+ .++ .++-.|+++++++. |.+.
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~-----~~~---~~l~ivL~Gqp~L~~-~lr~~~l~e~~~R~~ir~~l~-P~~~ 202 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE-----DSS---KLLSIVLIGQPKLRP-RLRLPVLRELEQRIDIRIELP-PLTE 202 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc-----ccc---CceeeeecCCcccch-hhchHHHHhhhheEEEEEecC-CcCh
Confidence 488999999999999888776654211 111 112345555322111 112 24556888876765 6555
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
++-..-+. -++..| -.+.--++++++..+... .++ -.|..-.+...|-..
T Consensus 203 ~~t~~yl~------------------------~~Le~a--~~~~~l~~~~a~~~i~~~-sqg---~P~lin~~~~~Al~~ 252 (269)
T COG3267 203 AETGLYLR------------------------HRLEGA--GLPEPLFSDDALLLIHEA-SQG---IPRLINNLATLALDA 252 (269)
T ss_pred HHHHHHHH------------------------HHHhcc--CCCcccCChhHHHHHHHH-hcc---chHHHHHHHHHHHHH
Confidence 53333322 223333 233334777776655433 222 357778888888888
Q ss_pred HHHcCCCCCcHHHHH
Q 007444 382 AALEGREKVNVDDLK 396 (603)
Q Consensus 382 Aal~gr~~Vt~eDv~ 396 (603)
|...|++.|+...+.
T Consensus 253 a~~a~~~~v~~a~~~ 267 (269)
T COG3267 253 AYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHcCCCccchhhcc
Confidence 889999999887764
No 273
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.33 E-value=0.00024 Score=76.24 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...||.|+|+.|+|||+|.-.+...+|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 468999999999999999999999886
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.25 E-value=0.0002 Score=75.18 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...|++|+|++|||||.|+.+|+..+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998873
No 275
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0024 Score=66.33 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=44.4
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccccc
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~ 296 (603)
..-|++||+++.|..+.+|.||..|++-. .+.++|-.++ ....+.+.+++|.-.. .+.
T Consensus 95 ~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------------~~~~fiL~~~-~~~~ll~TI~SRcq~~-~~~ 152 (290)
T PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLEDPP-------------QHGVIILTSA-KPQRLPPTIRSRSLSI-HIP 152 (290)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhhcCC-------------CCeEEEEEeC-ChhhCcHHHHhcceEE-Ecc
Confidence 34599999999999999999999999853 3444555555 5677788999998665 444
No 276
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0013 Score=61.09 Aligned_cols=104 Identities=26% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
.-+|||.|-|||||||++..|+..+ +.+++.+..-+-+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~------------------------------------------~~~~i~isd~vkE 44 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT------------------------------------------GLEYIEISDLVKE 44 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh------------------------------------------CCceEehhhHHhh
Confidence 4579999999999999999999775 4566666665666
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecC---CcEEEE
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC---KPLLIA 272 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~---~~~lIa 272 (603)
..++++.|=+ --..+||| +.+++.|=..|..|-+.|.-.|-.+ +|. +.+++-
T Consensus 45 n~l~~gyDE~-------------------y~c~i~DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~-FperwfdlVvVL 99 (176)
T KOG3347|consen 45 NNLYEGYDEE-------------------YKCHILDE-----DKVLDELEPLMIEGGNIVDYHGCDF-FPERWFDLVVVL 99 (176)
T ss_pred hcchhccccc-------------------ccCccccH-----HHHHHHHHHHHhcCCcEEeecccCc-cchhheeEEEEE
Confidence 6666654411 01456776 3555666666766665554322111 121 123344
Q ss_pred EeCCCCCCccHHHHhhhccc
Q 007444 273 TYNPEEGVVREHLLDRIAIN 292 (603)
Q Consensus 273 ttNp~eg~L~~~LldRf~l~ 292 (603)
++. ..-|++|+--+
T Consensus 100 r~~------~s~LY~RL~sR 113 (176)
T KOG3347|consen 100 RTP------NSVLYDRLKSR 113 (176)
T ss_pred ecC------chHHHHHHHHc
Confidence 433 35688888655
No 277
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=97.14 E-value=0.001 Score=73.18 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=130.8
Q ss_pred CCcccccHHHHHHHHH----hh--hccCCCcEEEECCCCChHHHHHHHHHHhCCCC--eee----ccccccCCCCC---C
Q 007444 94 LAAVVGQDAIKTALLL----GA--IDREIGGIAISGRRGTAKTVMARGLHAILPPI--EVV----VGSIANADPTC---P 158 (603)
Q Consensus 94 f~~IvGq~~~k~aL~l----aa--v~p~~~gVLL~GppGTGKT~lArala~~l~~~--~~~----~~~~~n~~~~~---~ 158 (603)
|+++.|.++.+..+.- ++ ..+....++|.||.|.|||+++..+...+... ... .+|+.+-+|-. |
T Consensus 75 f~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~p 154 (649)
T COG2766 75 FNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFPP 154 (649)
T ss_pred HhhhccHHHHHHHHHHHHhhhhhccchhhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcccCCH
Confidence 6899999988877731 11 23345669999999999999999999887542 222 25777776653 2
Q ss_pred Cccc-------------------ccccccccccccccccccccCCCeEE-------------c----CCCCccccccccc
Q 007444 159 DEWE-------------------DGLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRLIGSV 202 (603)
Q Consensus 159 ~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~pfv~-------------l----~~~~~~~~l~G~l 202 (603)
+..- ..+..++...-.+.+ ....++. . +.+..+..|+|.+
T Consensus 155 d~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi----~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~V 230 (649)
T COG2766 155 DHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDI----EKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKV 230 (649)
T ss_pred HHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCcc----ceeEEEEeecchhccceeeecCCCCCCCcchhHhhccc
Confidence 2111 111111111111111 1111111 1 2234456899999
Q ss_pred cchhccccCcccc----cccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC
Q 007444 203 DVEESVKTGTTVF----QPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE 278 (603)
Q Consensus 203 dl~~~l~~g~~~~----~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e 278 (603)
|+.+--.-|..-- --|.|.++++|++=+=|.-..+..++..||.+-++|.+.-.+.. -.+|.+=++|+-+|--|
T Consensus 231 di~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~~--~~i~~d~lIvahsNesE 308 (649)
T COG2766 231 DISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGI--GAIPFDGLIVAHSNESE 308 (649)
T ss_pred cHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCCCCc--CccccCceEEeecCcHH
Confidence 9877655554322 25999999999999999999999999999999999986543322 23455667888888544
Q ss_pred C------CccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 279 G------VVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 279 g------~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
+ .-.++|+||+-.+ .|++-....+...|.
T Consensus 309 ~q~fk~n~~nEAf~dRi~~v-~vPY~L~vseE~kIY 343 (649)
T COG2766 309 WQTFKNNKNNEAFLDRIYKV-KVPYCLRVSEEAKIY 343 (649)
T ss_pred HHHhhcCCchHHHHhheeee-ecceeeeecHHHHHH
Confidence 3 2348999998665 665443344444443
No 278
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.14 E-value=0.00062 Score=67.05 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=49.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeEeeC--CeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccccc
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVERE--GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~--G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~ 296 (603)
-|+.|||++.+....++.|-..+......+.+- .....+|-++++|||||.++-.-++.=-+||-.. .+.
T Consensus 97 ~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v-~v~ 168 (198)
T PF05272_consen 97 WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPV-EVS 168 (198)
T ss_pred HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEE-EEc
Confidence 588899999999888899999998887766543 3346678889999999954321122223577544 554
No 279
>PHA02624 large T antigen; Provisional
Probab=97.10 E-value=0.0023 Score=71.91 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=25.5
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
|...-+||+||+|||||+++.+|.+.+.+
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45556999999999999999999999853
No 280
>PF05729 NACHT: NACHT domain
Probab=97.01 E-value=0.0026 Score=59.30 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-++|.|++|+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 479999999999999999997764
No 281
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0014 Score=66.80 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=78.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC-CCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
+..||+|+.|+||..+|.+++..+ .|... .+..-|..|..... + ....|..+....
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~l-----------lC~~~~~~Cg~C~sC~~i~~----~------~HPDl~~i~p~~-- 64 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSI-----------VCTKANGFCKTCESCLKILN----G------KYNDFYLIFDQK-- 64 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHH-----------cCCCCCCCCCCCHHHHHHhc----C------CCCCEEEecCCc--
Confidence 569999999999999999999876 35321 12223344433110 0 123333321111
Q ss_pred ccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (603)
.-++.-++. .+. ..+...-+..+..-|++|+++++|.....|+||..+++-- .+.++|-+++
T Consensus 65 -~~I~id~ir-~l~---~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------------~~t~fiLit~ 126 (261)
T PRK05818 65 -NPIKKEDAL-SII---NKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------------KNTYGIFTTR 126 (261)
T ss_pred -ccCCHHHHH-HHH---HHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------------CCeEEEEEEC
Confidence 112211110 000 0000000111234599999999999999999999999853 3556666666
Q ss_pred CCCCCccHHHHhhhccc
Q 007444 276 PEEGVVREHLLDRIAIN 292 (603)
Q Consensus 276 p~eg~L~~~LldRf~l~ 292 (603)
....+.+-+.+|.-..
T Consensus 127 -~~~~lLpTI~SRCq~~ 142 (261)
T PRK05818 127 -NENNILNTILSRCVQY 142 (261)
T ss_pred -ChHhCchHhhhheeee
Confidence 6777889999997654
No 282
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.89 E-value=0.0021 Score=59.52 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|+|++|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988764
No 283
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.88 E-value=0.0023 Score=74.93 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-++|.|+||||||++++++...+.
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999988764
No 284
>PRK13695 putative NTPase; Provisional
Probab=96.84 E-value=0.0041 Score=59.58 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=41.1
Q ss_pred cCceEEeccccc---CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-CCCccHHHHhhhcccccccCCC
Q 007444 224 HRGVLYIDEINL---LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPM 299 (603)
Q Consensus 224 ~~gIL~IDEi~~---l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~L~~~LldRf~l~v~v~~p~ 299 (603)
...+|+|||+.. ++....+.|..+++.+. .+|+++|.. ...+...+..|.+..|. . .
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~----------------~~i~v~h~~~~~~~~~~i~~~~~~~i~-~--~ 156 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK----------------PVIATLHRRSVHPFVQEIKSRPGGRVY-E--L 156 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC----------------eEEEEECchhhHHHHHHHhccCCcEEE-E--E
Confidence 356999999643 45566777777776543 467777732 12344556666666542 2 2
Q ss_pred CHHHHHHHHHHH
Q 007444 300 TFEDRVAAVGIA 311 (603)
Q Consensus 300 ~~e~r~eI~~~~ 311 (603)
+.+.|.++....
T Consensus 157 ~~~~r~~~~~~~ 168 (174)
T PRK13695 157 TPENRDSLPFEI 168 (174)
T ss_pred cchhhhhHHHHH
Confidence 566666665543
No 285
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.83 E-value=0.029 Score=58.84 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=39.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCe-eeEecCCcEEEEEeCCCC--CCccHHHHhhhcc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI-SFKHPCKPLLIATYNPEE--GVVREHLLDRIAI 291 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~-s~~~p~~~~lIattNp~e--g~L~~~LldRf~l 291 (603)
.-++++||++.-...-.+.|-.+.....+.+++-+. .+.....+.+|.++|..+ ..-+.++.+|+-+
T Consensus 129 k~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~v 198 (304)
T TIGR01613 129 KRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRI 198 (304)
T ss_pred CEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEE
Confidence 347889998743222224444444455556665443 233444677888888433 2346788999854
No 286
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.82 E-value=0.0033 Score=71.70 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.5
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcC
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEG 251 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g 251 (603)
..+|+|||+..++..+...|+..+..+
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 359999999999999999999987654
No 287
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.74 E-value=0.0041 Score=71.24 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=29.5
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (603)
.+|+|||...++-.+...|+.++..+. +++++|=.+
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al~~~~--------------rlIlvGD~~ 302 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDALPPHA--------------RVIFLGDRD 302 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhcccCC--------------EEEEecchh
Confidence 599999999999999999999886543 567777544
No 288
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.66 E-value=0.0013 Score=74.19 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+..+||.||+|||||+|.|+|+.+.|-
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 3567999999999999999999999984
No 289
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.60 E-value=0.0019 Score=63.82 Aligned_cols=36 Identities=28% Similarity=0.223 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHh
Q 007444 98 VGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 98 vGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~ 139 (603)
.+|..+..+|. ...-|.+.||.|||||+||-+.+..
T Consensus 7 ~~Q~~~~~al~------~~~~v~~~G~AGTGKT~LA~a~Al~ 42 (205)
T PF02562_consen 7 EEQKFALDALL------NNDLVIVNGPAGTGKTFLALAAALE 42 (205)
T ss_dssp HHHHHHHHHHH------H-SEEEEE--TTSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHH------hCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556666666 2357999999999999999887743
No 290
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.58 E-value=0.0045 Score=63.72 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=42.3
Q ss_pred cchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCcc
Q 007444 218 GLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR 282 (603)
Q Consensus 218 Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~ 282 (603)
|-+...++.++++||+++|++++++.|-..++... ...|..++ +.++|.-+|-...++.
T Consensus 172 ~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp---~v~gv~fr---kaIFIfLSN~gg~eI~ 230 (344)
T KOG2170|consen 172 GTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP---QVSGVDFR---KAIFIFLSNAGGSEIA 230 (344)
T ss_pred HHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc---cccccccc---ceEEEEEcCCcchHHH
Confidence 34455678899999999999999999999998532 22344333 5688999995444443
No 291
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.54 E-value=0.0066 Score=65.44 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 102 AIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 102 ~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+...++-+..+.....++|.|+.|||||++.++|...+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 3333333333334556799999999999999999998875
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.53 E-value=0.012 Score=57.82 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
|-|+|.||+|+||||+++++...++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5699999999999999999888775
No 293
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0089 Score=58.37 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
+|++||+|+||||++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 7899999999999998887665
No 294
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.039 Score=57.85 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=49.0
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHH
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~ 303 (603)
..-|++||+++.+....++.||..|++- |...++|.+++ ....+-+.+..|.... .+. |.+.++
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~-~~~kll~TI~SRc~~~-~f~-~l~~~~ 153 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTK-NINKVLPTIVSRCQVF-NVK-EPDQQK 153 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeC-ChHhChHHHHhCeEEE-ECC-CCCHHH
Confidence 4569999999999999999999999974 33455665555 4467778889998765 666 445554
Q ss_pred HH
Q 007444 304 RV 305 (603)
Q Consensus 304 r~ 305 (603)
..
T Consensus 154 l~ 155 (299)
T PRK07132 154 IL 155 (299)
T ss_pred HH
Confidence 43
No 295
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.37 E-value=0.0022 Score=57.19 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|+||+||||+|+.|++.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999763
No 296
>PHA02774 E1; Provisional
Probab=96.36 E-value=0.0098 Score=66.79 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
|....++|+||||||||.++.+|.+.+.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456799999999999999999999874
No 297
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.33 E-value=0.0039 Score=59.50 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=34.1
Q ss_pred ccccHHHHHHHHHhh--h-ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 97 VVGQDAIKTALLLGA--I-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 97 IvGq~~~k~aL~laa--v-~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
++|.++....|.-.. . ......++|+|++|+|||++++.+...+...... .+.++|++.
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 689999888885433 2 2234569999999999999999888776432212 344455444
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.23 E-value=0.0035 Score=57.47 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|++.|+||+||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998875
No 299
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.074 Score=59.66 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=47.5
Q ss_pred ceEEecccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccc
Q 007444 226 GVLYIDEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAIN 292 (603)
Q Consensus 226 gIL~IDEi~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~ 292 (603)
+++++||++.+. ..+++.|+..++... ... +++++.+| ....+++.+.. ||+..
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-----------~~~-v~~~~~~~-~~~~~~~a~~~~~~~~~~ 144 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-----------RGQ-VIVIGATN-RPDGLDPAKRRPGRFDRE 144 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhccccc-----------CCc-eEEEeecC-CccccChhHhCcccccee
Confidence 799999998763 245667777766433 122 56777777 55555665554 88888
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 007444 293 LSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 293 v~v~~p~~~e~r~eI~~~~ 311 (603)
+.+..| +...+.+|....
T Consensus 145 ~~~~~~-~~~~~~ei~~~~ 162 (494)
T COG0464 145 IEVNLP-DEAGRLEILQIH 162 (494)
T ss_pred eecCCC-CHHHHHHHHHHH
Confidence 888754 666666776543
No 300
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.15 E-value=0.006 Score=61.03 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.1
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala 137 (603)
.-+||||+||+|||++|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 459999999999999999885
No 301
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.13 E-value=0.011 Score=69.45 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+-++|.|++|||||++++++...+.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999987653
No 302
>PRK08118 topology modulation protein; Reviewed
Probab=96.08 E-value=0.0057 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|++|+||||+|+.|+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 303
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.016 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|++.|.||+||||+|+-|+++|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999984
No 304
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=96.01 E-value=0.015 Score=62.72 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=95.6
Q ss_pred CceEEecccccC----CH----HHHHHHHHHHHcCceeEeeCCee-eEec-CCcEEEEEeCCCCC-----------CccH
Q 007444 225 RGVLYIDEINLL----DE----GISNLLLNVLTEGVNIVEREGIS-FKHP-CKPLLIATYNPEEG-----------VVRE 283 (603)
Q Consensus 225 ~gIL~IDEi~~l----~~----~~~~~LL~~l~~g~~~v~r~G~s-~~~p-~~~~lIattNp~eg-----------~L~~ 283 (603)
+..+|.||+..+ .. .....|+...+.+.+.+.|.+.. +.++ ..+.|++++.|+.- ....
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~~~~~~~~ 229 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAEDPEFRGD 229 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhhcccccCC
Confidence 346778998654 22 45678888888888777776543 3333 46778888887421 1234
Q ss_pred HHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh---hHHHhhhhhHhhHHHHHHHH-HHHHhccccCCCHHHHHHHHHH
Q 007444 284 HLLDRIAINLSADLPMTFEDRVAAVGIATQFQER---SNEVFKMVEEETDLAKTQII-LAREYLKDVAIGREQLKYLVME 359 (603)
Q Consensus 284 ~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~---~~~~~~~~~~~~~~l~~~I~-~ar~~l~~v~is~~~l~~L~~~ 359 (603)
-|+.||-+++.-. ....+. .+... .......|......+..... ........+.+++++.+++.++
T Consensus 230 Gll~RfL~~~p~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~ 299 (378)
T PF13148_consen 230 GLLARFLFVIPDS---RKGRRF-------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLELSDEAKELFREW 299 (378)
T ss_pred ChHhheeeeccCc---cccccc-------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHH
Confidence 6888998443211 111110 00000 00001111111111111110 0011234467999988877765
Q ss_pred HHc----C---CC------CchhHHHHHHHHHHHHHHHc-----CCCCCcHHHHHHHHHHHcCCC
Q 007444 360 ALR----G---GC------QGHRAELYAARVAKCLAALE-----GREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 360 a~~----~---~v------~s~Ra~i~llr~Ara~Aal~-----gr~~Vt~eDv~~A~~lvl~hR 406 (603)
... . +. .-.|....++|+|-.++.++ ....|+.+++..|+.++-.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~ 364 (378)
T PF13148_consen 300 YNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFL 364 (378)
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHH
Confidence 421 1 11 12366678899999999888 677899999999999886543
No 305
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.011 Score=56.39 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|.|||||||+++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 44
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.98 E-value=0.049 Score=56.10 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=31.1
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.++.++--.+.....|.- ++....+.|+|.|++|+||||+++++...++
T Consensus 57 ~~l~~lg~~~~~~~~l~~-~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRK-LLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHH-HHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 344444322333334433 2322346699999999999999999877664
No 307
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.96 E-value=0.018 Score=59.25 Aligned_cols=53 Identities=32% Similarity=0.469 Sum_probs=34.9
Q ss_pred CCCCCCcccccHHH---HHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 90 QFFPLAAVVGQDAI---KTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 90 ~~~~f~~IvGq~~~---k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
..+++.++.-.... ...++..++ ...+.|||.|++|+||||+++++...+++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 45677777544322 222222222 246789999999999999999999998753
No 308
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.94 E-value=0.039 Score=59.05 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+.|||.||+|+||||+.+++...++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57799999999999999999988765
No 309
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.013 Score=64.63 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.3
Q ss_pred CCCCccccccCCCCCCCCcccccH----HHHHHHH-HhhhccCCCc--EEEECCCCChHHHHHHHHHHhCC
Q 007444 78 AAASEDQDSYGRQFFPLAAVVGQD----AIKTALL-LGAIDREIGG--IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 78 ~~~~~~~~~~~~~~~~f~~IvGq~----~~k~aL~-laav~p~~~g--VLL~GppGTGKT~lArala~~l~ 141 (603)
+....+.+..+..|-..+++.=+. +++..|. ++...|..++ +||.||+||||||.++.|+.++.
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 344556667778888888876554 4555553 5566777664 99999999999999999999985
No 310
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.91 E-value=0.0094 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|||||++++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 311
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.042 Score=58.57 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=103.4
Q ss_pred ccccchhcccCceEEecccccC---CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-CC---------C-
Q 007444 215 FQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EG---------V- 280 (603)
Q Consensus 215 ~~~Gll~~A~~gIL~IDEi~~l---~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg---------~- 280 (603)
.++|++..- -++.+||+-.+ +++.+..|-+.|++|. ++|...++.-.+..++++--|.- |+ .
T Consensus 269 rqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGs--f~RG~~~v~~~ASlVFvGNvnqs~E~lvktshL~~pf 344 (683)
T COG4930 269 RQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGS--FERGDKKVVSDASLVFVGNVNQSSEGLVKTSHLTYPF 344 (683)
T ss_pred ccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCC--cccccccccccceEEEEecccccccceeehhhccccC
Confidence 456666443 37889999765 5667889999999998 78877777777777778877742 21 1
Q ss_pred ----ccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHH
Q 007444 281 ----VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (603)
Q Consensus 281 ----L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L 356 (603)
.+.++.|||.-.+ + -++ |.+.+ |+.|.+.|--..+-+.+.+...| +-.+++. +...
T Consensus 345 PeaM~DtAFfDR~H~yi--P---GWE----iPK~r------pehft~rYG~isDY~AE~~reMR----KrS~sd~-i~rf 404 (683)
T COG4930 345 PEAMRDTAFFDRIHGYI--P---GWE----IPKIR------PEHFTKRYGVISDYFAEALREMR----KRSLSDL-IGRF 404 (683)
T ss_pred chhhhhhHHHHHHhccC--c---ccc----CccCC------HHHhccccchHHHHHHHHHHHHH----HHHHHHH-HHHH
Confidence 2357788886552 2 222 22211 22233333333333333333333 2344543 3555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHHH-HHcCCCCCcHHHHHHHHHHHcCCCccC
Q 007444 357 VMEALRGGCQGHRAELYAARVAKCLA-ALEGREKVNVDDLKKAVELVILPRSII 409 (603)
Q Consensus 357 ~~~a~~~~v~s~Ra~i~llr~Ara~A-al~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (603)
..+. |....|..+..-|+...+- .|.-....+.++++..++++|.-|++.
T Consensus 405 ~kLg---nNlnqRDviavkrt~SGLlKLL~Pd~t~~kee~k~ileyAle~RrRV 455 (683)
T COG4930 405 VKLG---NNLNQRDVIAVKRTTSGLLKLLFPDKTFDKEELKTILEYALELRRRV 455 (683)
T ss_pred HHhc---cccchhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 5554 3345688887777666554 455677899999999999999988763
No 312
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.049 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.7
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|...++
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999999986
No 313
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.83 E-value=0.0056 Score=54.62 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|+|.|.+|+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 314
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.83 E-value=0.02 Score=57.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHHh
Q 007444 119 IAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (603)
++|.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999998876
No 315
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.038 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
--+.||.|||||||||+.|-|+.++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhh
Confidence 34689999999999999999999874
No 316
>PRK03839 putative kinase; Provisional
Probab=95.73 E-value=0.0098 Score=57.17 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 317
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.70 E-value=0.047 Score=56.72 Aligned_cols=106 Identities=13% Similarity=0.039 Sum_probs=73.6
Q ss_pred CcEEEEEeCCCCC-CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccc
Q 007444 267 KPLLIATYNPEEG-VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKD 345 (603)
Q Consensus 267 ~~~lIattNp~eg-~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~ 345 (603)
.++|||+|.-.+. ++.++|++|.-+. .+. |.+.+....++++.+.... ......
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~-~l~-~L~~~di~~il~ral~~~~-----------------------~~~~~~ 62 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFIL-RLK-RLSLVATQKLIEKALSQDE-----------------------VLAKHK 62 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhhee-eec-CCCHHHHHHHHHHHHHhhh-----------------------ccCCcC
Confidence 3678999886664 7899999999766 676 7788888888776543200 000124
Q ss_pred cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 346 VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 346 v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
+.++++++++|+..| +. ..|..+++++.|-..+.-.+...||.++|++++.-
T Consensus 63 ~~i~~~al~~ia~~a---~G-DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 63 FKIDDGLYNAMHNYN---EG-DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 114 (300)
T ss_pred CCcCHHHHHHHHHhc---CC-HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhH
Confidence 789999999998875 33 47999999988764321122224899999988754
No 318
>PRK13764 ATPase; Provisional
Probab=95.67 E-value=0.038 Score=62.98 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..++|||.|++|+||||+++++...++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998875
No 319
>PF13245 AAA_19: Part of AAA domain
Probab=95.66 E-value=0.012 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.3
Q ss_pred CcEEEECCCCChHH-HHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKT-VMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT-~lArala~~l 140 (603)
+-++|.|||||||| ++++.++.++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556999999999 6666776665
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.58 E-value=0.011 Score=47.76 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|.|.|++|+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.57 E-value=0.037 Score=57.14 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+++|.|++|+||||+.+.++.++.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999998863
No 322
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.56 E-value=0.014 Score=62.68 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=21.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-++|.|.||||||+||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37999999999999999999887
No 323
>PRK07261 topology modulation protein; Provisional
Probab=95.56 E-value=0.014 Score=55.99 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|++|+||||+|+.|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 324
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.56 E-value=0.013 Score=61.65 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
-..|+.|+|+-|.|||.|.-.+...+|
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 457899999999999999999999887
No 325
>PRK13947 shikimate kinase; Provisional
Probab=95.52 E-value=0.015 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
+|+|.|+||+|||++++.|++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 326
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.51 E-value=0.023 Score=68.71 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=37.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC----CCCCccHHHHhhhcc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAI 291 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp----~eg~L~~~LldRf~l 291 (603)
+.+|+|||+..++...+..|+..+.... +++++||=.+. ..|..-..|.++++.
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~~V~aG~~f~~l~~~i~~ 526 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTRAG-------------AKLVLVGDPEQLQPIEAGAAFRAIADRIGY 526 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHhcC-------------CEEEEECCHHHcCCCCCCcHHHHHHhhcCE
Confidence 4699999999999999999999886321 25667774442 224444566666653
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.48 E-value=0.041 Score=50.65 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.3
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+...-|+|.|+.|+||||++|.+++.+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3445699999999999999999999885
No 328
>PHA00729 NTP-binding motif containing protein
Probab=95.42 E-value=0.011 Score=59.28 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
+...|+|+|+||||||++|.+|+..+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999875
No 329
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.39 E-value=0.013 Score=56.36 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.4
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|+||+||||+++.|+..++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999874
No 330
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.36 E-value=0.02 Score=56.36 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhC
Q 007444 104 KTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 104 k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l 140 (603)
+.|+..+.- ..+ .+|.||||||||+++..+...+
T Consensus 7 ~~Ai~~~~~---~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALS---SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCT---SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 445544333 344 9999999999997665555443
No 331
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.03 Score=65.93 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=84.3
Q ss_pred CCccccc--HHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 94 LAAVVGQ--DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 94 f~~IvGq--~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
++-++|. +++++.+.+..-. ...+-+|.|+||+|||.++..+++.....
T Consensus 185 ldPvigr~deeirRvi~iL~Rr-tk~NPvLVG~~gvgktaiv~gla~ri~~G---------------------------- 235 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRK-TKNNPVLVGEPGVGKTAIVEGLAQRIATG---------------------------- 235 (898)
T ss_pred CCCccCCchHHHHHHHHHHhcc-CCCCceEEecCCCCchhHHHHHHHHhhcC----------------------------
Confidence 5667885 7788877543322 23678889999999999999999875321
Q ss_pred cccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccccccchhc---ccCc-eEEecccccCCH-------
Q 007444 172 DTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRG-VLYIDEINLLDE------- 238 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~g-IL~IDEi~~l~~------- 238 (603)
..+.......++.+..+. .-...-|.+ +.- + .+++.+ +.+| ||||||++.+-.
T Consensus 236 ----~vp~~l~~~~l~~l~~g~l~aGa~~rge~--E~r-------l-k~l~k~v~~~~~gvILfigelh~lvg~g~~~~~ 301 (898)
T KOG1051|consen 236 ----DVPETLKDKKLIALDFGSLVAGAKRRGEF--EER-------L-KELLKEVESGGGGVILFLGELHWLVGSGSNYGA 301 (898)
T ss_pred ----CCCccccccceEEEEhhhcccCcccchHH--HHH-------H-HHHHHHHhcCCCcEEEEecceeeeecCCCcchH
Confidence 111111233344443332 111111111 100 0 133332 3233 889999998722
Q ss_pred -HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCC
Q 007444 239 -GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPM 299 (603)
Q Consensus 239 -~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~ 299 (603)
+..+.|-..+..|. +.+||||..+++ +-+|+|-.||.++ .|..|.
T Consensus 302 ~d~~nlLkp~L~rg~---------------l~~IGatT~e~Y~k~iekdPalErrw~l~-~v~~pS 351 (898)
T KOG1051|consen 302 IDAANLLKPLLARGG---------------LWCIGATTLETYRKCIEKDPALERRWQLV-LVPIPS 351 (898)
T ss_pred HHHHHhhHHHHhcCC---------------eEEEecccHHHHHHHHhhCcchhhCccee-EeccCc
Confidence 34555555555443 578888775553 3468899999998 566553
No 332
>PRK06217 hypothetical protein; Validated
Probab=95.35 E-value=0.019 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|.+|+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 333
>PRK04132 replication factor C small subunit; Provisional
Probab=95.32 E-value=0.0095 Score=70.24 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=42.7
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHH
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVM 132 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~l 132 (603)
.++..+.+|..|++|+||+.++..|...+-+....|++|+||||+||++.
T Consensus 7 ~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred ccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 45667789999999999999999987766666677899999999999754
No 334
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.30 E-value=0.025 Score=60.20 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
..++|||.|++|+||||+.++|...+|.-
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 46789999999999999999999998853
No 335
>PRK00625 shikimate kinase; Provisional
Probab=95.26 E-value=0.019 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|.||+||||+++.|++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 336
>PRK13949 shikimate kinase; Provisional
Probab=95.26 E-value=0.02 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
..|+|.|++|+||||+++.|++.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999987
No 337
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.26 E-value=0.25 Score=56.09 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHhhhc-cCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 99 GQDAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 99 Gq~~~k~aL~laav~-p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
|-=-+.+|+.+...+ +...=|.|.|++|+||||+++.|+..++
T Consensus 47 g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 47 GFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred chhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 444566666443332 2223488999999999999999998875
No 338
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.24 E-value=0.032 Score=58.17 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (603)
....+-|+|..++|||++++..+..... |-
T Consensus 192 ~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~------------------------------------------p~-------- 221 (286)
T PF06048_consen 192 EGFGFHLYGQSSSGKTTALQLAASVWGN------------------------------------------PD-------- 221 (286)
T ss_pred CceEEEEEeCCCCCHHHHHHHhhhhCcC------------------------------------------ch--------
Confidence 4566999999999999999998887641 10
Q ss_pred cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 195 ~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
.++.+++-. ...-.+.....++..|+|||+...++..+..+.-.+.+|.
T Consensus 222 --~l~~sw~~T-------~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~ 270 (286)
T PF06048_consen 222 --GLIRSWNST-------DNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ 270 (286)
T ss_pred --hhhhcchhh-------HHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence 222222110 0111123344467799999999998887777777777765
No 339
>PTZ00301 uridine kinase; Provisional
Probab=95.24 E-value=0.15 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|.|.|++|+||||+|+.|...+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 340
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.22 E-value=0.021 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
+|+|.|++|+|||++++.|+..+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998873
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.22 E-value=0.02 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|+|.|++|+||||+|+.|+..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 342
>PRK08233 hypothetical protein; Provisional
Probab=95.21 E-value=0.016 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
=|.|.|++|+||||+++.|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378899999999999999999885
No 343
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.016 Score=56.13 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+|+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999865
No 344
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=95.17 E-value=0.016 Score=57.15 Aligned_cols=44 Identities=5% Similarity=-0.109 Sum_probs=33.8
Q ss_pred hccCCcEEEEEEeCCchhhh------hhhhHHhHHHHHHhhccc-ccccccc
Q 007444 557 ARKAGALVGLMFSVLILQLI------LLPFQEEKGKRMKLIFPQ-KPSCIFY 601 (603)
Q Consensus 557 ~~~~~~l~ifvvDaS~gSma------~~Rm~~aKgav~~lL~da-~~~~~~~ 601 (603)
..+....++||||+| |||. ..||..+|.++..+|..- -.+++.+
T Consensus 16 ~~~~~~~vv~vlD~S-gSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~l 66 (206)
T cd01456 16 EPQLPPNVAIVLDNS-GSMREVDGGGETRLDNAKAALDETANALPDGTRLGL 66 (206)
T ss_pred ccCCCCcEEEEEeCC-CCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEE
Confidence 344557799999999 9997 369999999999998754 2445543
No 345
>PRK06762 hypothetical protein; Provisional
Probab=95.17 E-value=0.016 Score=54.78 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+|+.|+..++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 346
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.16 E-value=0.015 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|++|+||||+++.|+..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 347
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.13 E-value=0.029 Score=67.40 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.7
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHc
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTE 250 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~ 250 (603)
...+|+|||+..++...+..|+.....
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhh
Confidence 346999999999999999999886643
No 348
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.13 E-value=0.069 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.2
Q ss_pred CCcEEEECCCCChHHHHH-HHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMA-RGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lA-rala~~l~ 141 (603)
..-++|.|++|||||+++ +.++..+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 446999999999999997 55555543
No 349
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.07 E-value=0.086 Score=55.36 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=48.8
Q ss_pred eEEecccccCCHH-HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhccc-ccccCCCCHH
Q 007444 227 VLYIDEINLLDEG-ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAIN-LSADLPMTFE 302 (603)
Q Consensus 227 IL~IDEi~~l~~~-~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l~-v~v~~p~~~e 302 (603)
|.++||+|.+-.+ -|-.|....|.-. +.++ .+++||.|.... ..|-.-...||.-+ |.+..+...+
T Consensus 140 iFIldEfDlf~~h~rQtllYnlfDisq--------s~r~--Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~ 209 (408)
T KOG2228|consen 140 IFILDEFDLFAPHSRQTLLYNLFDISQ--------SARA--PICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLG 209 (408)
T ss_pred EEEeehhhccccchhhHHHHHHHHHHh--------hcCC--CeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChH
Confidence 4447799988554 3444444544321 1122 468888776433 23445567799887 4444444566
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhH
Q 007444 303 DRVAAVGIATQFQERSNEVFKMVEE 327 (603)
Q Consensus 303 ~r~eI~~~~~~f~~~~~~~~~~~~~ 327 (603)
+-+++.+-.+.....-..+..+|..
T Consensus 210 ~yv~l~r~ll~v~~e~~~~~~~wn~ 234 (408)
T KOG2228|consen 210 DYVDLYRKLLSVPAEFSDFAEKWNR 234 (408)
T ss_pred HHHHHHHHHhcCCccCccHHHHHHh
Confidence 6777766554332221124455553
No 350
>PRK14532 adenylate kinase; Provisional
Probab=95.06 E-value=0.018 Score=55.64 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+++.|++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998874
No 351
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.05 E-value=0.018 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|.|+||+||||+++.|+..+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999998763
No 352
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.04 E-value=0.018 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999999875
No 353
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.98 E-value=0.093 Score=56.69 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|.|||.||+|+||||+++++...+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357799999999999999999988763
No 354
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.95 E-value=0.11 Score=59.36 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+|.++--.+.....+. .++....|-|||.||+|+||||+..++...+.
T Consensus 293 ~~l~~lg~~~~~~~~l~-~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFL-EAIHKPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHH-HHHHhcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 34555332333333333 23333457799999999999999887776664
No 355
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=94.87 E-value=0.032 Score=55.91 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhccCCcEEEEEEeCCchhhhh
Q 007444 514 IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVGLMFSVLILQLIL 577 (603)
Q Consensus 514 ~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~~~~~l~ifvvDaS~gSma~ 577 (603)
..+|++..|||++.- .. |. +.++..+.++.+...-+|+++|.| |||..
T Consensus 25 ~~~lD~rrTir~~~r-----~~-----g~-----~~~l~~r~~r~~~~~~lvvl~DvS-GSM~~ 72 (222)
T PF05762_consen 25 RGRLDLRRTIRASLR-----TG-----GE-----PLRLVRRRRRPRKPRRLVVLCDVS-GSMAG 72 (222)
T ss_pred CCCCCHHHHHHHHHh-----cC-----CC-----cceeeccccccCCCccEEEEEeCC-CChHH
Confidence 357999999998662 11 11 345555554444445788999999 99964
No 356
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.78 E-value=0.024 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|+||+||||+++.|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998863
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.75 E-value=0.024 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|+||+||||+++.|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998763
No 358
>PRK14530 adenylate kinase; Provisional
Probab=94.67 E-value=0.026 Score=56.09 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998874
No 359
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.65 E-value=0.065 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
..-++|+|+||||||+++..++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 445999999999999999998643
No 360
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.64 E-value=0.032 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.+|+|.|.+|+||||+.+.||+.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 579999999999999999999988
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.60 E-value=0.036 Score=50.41 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred cccccHHHHHHHHHhhh----cc-CCCc--EEEECCCCChHHHHHHHHHHhCC
Q 007444 96 AVVGQDAIKTALLLGAI----DR-EIGG--IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav----~p-~~~g--VLL~GppGTGKT~lArala~~l~ 141 (603)
.|.||.-++..+.-+.. ++ ..++ +-+.|++|||||.+++.||+.+-
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 57899977776633221 22 2334 45899999999999999998863
No 362
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.59 E-value=0.029 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-++|.|++|+||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998875
No 363
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.57 E-value=0.046 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
..|+|.|++|+||||+++.|+..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 569999999999999999999886
No 364
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.56 E-value=0.071 Score=67.47 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=30.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeC
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattN 275 (603)
+.||||||+..++......|+..+.... +++++||=.+
T Consensus 1063 ~~llIVDEaSMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~ 1100 (1747)
T PRK13709 1063 NTLFLLDESSMVGNTDMARAYALIAAGG-------------GRAVSSGDTD 1100 (1747)
T ss_pred CcEEEEEccccccHHHHHHHHHhhhcCC-------------CEEEEecchH
Confidence 4799999999999999999999877421 2567777554
No 365
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.56 E-value=0.056 Score=52.45 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=24.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...++|.|++|+||||++++|..++++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 567999999999999999999998864
No 366
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.53 E-value=0.029 Score=52.96 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHHh
Q 007444 119 IAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (603)
|.|.|.+|||||||++.|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 367
>PRK14531 adenylate kinase; Provisional
Probab=94.52 E-value=0.03 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998864
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.46 E-value=0.036 Score=52.42 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|-|.|+|||||||+++.|+..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999999874
No 369
>PRK13948 shikimate kinase; Provisional
Probab=94.35 E-value=0.061 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
....|+|.|.+|+||||+++.|++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999987
No 370
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=94.33 E-value=0.012 Score=66.06 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCCCcccccHHHHHHHHHhh-hccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGA-IDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laa-v~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|...++||+.+.+||..+. +...+-+|.+.|++||||+++++.+-....
T Consensus 5 ~~~~~~iGQ~RA~~Al~~gl~i~~~GYNIfv~G~~GtGr~t~v~~~l~~~a 55 (509)
T PF13654_consen 5 EPLEGIIGQERAVEALEFGLGIRKPGYNIFVMGPPGTGRRTYVRRFLEERA 55 (509)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35678999999999997654 333456799999999999999998776553
No 371
>PRK02496 adk adenylate kinase; Provisional
Probab=94.28 E-value=0.036 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.++|.|+||+||||+++.|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 372
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.24 E-value=0.062 Score=57.45 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..++|||.|++|+||||++++|...++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 4678999999999999999999998874
No 373
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.23 E-value=0.051 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|+||+||||+++.|++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 374
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=94.22 E-value=0.038 Score=58.80 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=42.6
Q ss_pred CCCcChHHHHHhhCCchhhhhcccccCCcceeecccchhHHHhhc----cCCcEEEEEEeCCchhhhh
Q 007444 514 IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR----KAGALVGLMFSVLILQLIL 577 (603)
Q Consensus 514 ~~~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~~Dlr~k~r~~----~~~~l~ifvvDaS~gSma~ 577 (603)
...|++..|++.|-- |+.. .+....+-|.++|||.+..+. -+.++++++.|.| |||.-
T Consensus 156 ~s~l~~~RT~r~al~----Rria-~~~p~~~Pi~~~DlRYr~~~~~~~P~s~AV~fc~MDvS-GSM~~ 217 (371)
T TIGR02877 156 MPNLDKKRTVIEALK----RNQL-RGRPELYPITKEDLRYKTWKENEKPESNAVVIAMMDTS-GSMGQ 217 (371)
T ss_pred cccchHHHHHHHHHH----HHhh-ccCCCccCCCcccccccccccccCccCcEEEEEEEeCC-CCCCH
Confidence 457999999998763 2221 122335668999999988765 4678888999999 99965
No 375
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.21 E-value=0.057 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
..|+|.|.+|+|||++++.|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 376
>PRK06547 hypothetical protein; Provisional
Probab=94.20 E-value=0.04 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|++.+.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4488889999999999999998763
No 377
>PRK04040 adenylate kinase; Provisional
Probab=94.19 E-value=0.036 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|+|.||+||||+++.++..++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999885
No 378
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.14 E-value=0.037 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|.+|+|||++++.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 379
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.039 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|..++.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999874
No 380
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.11 E-value=0.12 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-++|+||.+|||||+++.+...+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~ 62 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL 62 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC
Confidence 699999999999999998888775
No 381
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.05 E-value=0.039 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..++|.||+|+||||+++.|+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3589999999999999999998764
No 382
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.05 E-value=0.07 Score=55.99 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..+++||.|++|+||||++++|...++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999999875
No 383
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.04 E-value=0.043 Score=54.23 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|+||+||||+++.|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999998764
No 384
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.04 E-value=0.055 Score=58.62 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=30.5
Q ss_pred cHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 100 q~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+.++..|.-.+ .||||.|+||.||||+|.++|..+..
T Consensus 252 ~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 252 SDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred CHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHHHh
Confidence 445666665533 69999999999999999999988753
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.04 E-value=0.054 Score=59.74 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=31.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
.-|+|+|++|+||||++..|+..+.... .....+.||+..+.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g-~kV~lV~~D~~R~aa 138 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG-LKVGLVAADTYRPAA 138 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEecCCCCCHHH
Confidence 3499999999999999999998775322 234456777665543
No 386
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.02 E-value=0.053 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+-|+|+||+|+||||++..|+..+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999987653
No 387
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.039 Score=52.77 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999998874
No 388
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.96 E-value=0.077 Score=58.39 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=26.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC-CCeeeccccccCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP-PIEVVVGSIANADPT 156 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~-~~~~~~~~~~n~~~~ 156 (603)
+-++|.||+|+||||++..|+..+. .......+.++||+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 3589999999999999998886553 111122334556553
No 389
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.93 E-value=0.045 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+|||||++.|...++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999874
No 390
>PRK14527 adenylate kinase; Provisional
Probab=93.91 E-value=0.048 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|+||+||||+++.|+..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999997764
No 391
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.91 E-value=0.039 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|-|.|++|+||||+|+.|+..|.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999986
No 392
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.91 E-value=0.047 Score=54.21 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+++.|+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 393
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.87 E-value=0.046 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|.+|+||||+|++|...|.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998873
No 394
>PTZ00202 tuzin; Provisional
Probab=93.79 E-value=0.11 Score=56.74 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.2
Q ss_pred CCCCCCcccccHHHHHHHHHhh--hccCC-CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLGA--IDREI-GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laa--v~p~~-~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|.+..+++|.+....+|.-.. ++... .-++|.|++|+|||+++|.+...++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3566778999999888884333 22221 2478999999999999999998775
No 395
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.77 E-value=0.048 Score=56.79 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 478899999999999999999874
No 396
>PLN02200 adenylate kinase family protein
Probab=93.77 E-value=0.051 Score=54.92 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+++.|+..++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 397
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.74 E-value=0.05 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|..+++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3477999999999999999999876
No 398
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.73 E-value=0.056 Score=57.35 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.||||||+.|.||.+...
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44999999999999999999998753
No 399
>PRK13946 shikimate kinase; Provisional
Probab=93.71 E-value=0.078 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|.+|+|||++++.|++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999987
No 400
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.70 E-value=0.046 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|.||+||||+|+.|+..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 401
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.055 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-|+|.||+|+|||++++.|+..++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34599999999999999999999875
No 402
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.66 E-value=0.05 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~ 142 (603)
-++|.||+|+||||+++.|+..++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4899999999999999999987753
No 403
>PRK10436 hypothetical protein; Provisional
Probab=93.65 E-value=0.35 Score=53.82 Aligned_cols=49 Identities=22% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+|+++--.+.....+.- ++....|-||+.||+|+||||+..++-..+.
T Consensus 195 ~~L~~LG~~~~~~~~l~~-~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQ-ALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHHH-HHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 455554333333333432 2222456799999999999998877666553
No 404
>PRK14528 adenylate kinase; Provisional
Probab=93.62 E-value=0.057 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998763
No 405
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.62 E-value=0.094 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
..++|||.|++|+||||++++|...+
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999876
No 406
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.61 E-value=0.35 Score=54.19 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+|.++--.++....+.. ++....|-|||.||+|+||||+.+++-..++
T Consensus 219 ~~l~~Lg~~~~~~~~l~~-~~~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 219 LDLETLGMSPELLSRFER-LIRRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHcCCCHHHHHHHHH-HHhcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 455554333444444433 2222334589999999999999998766654
No 407
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.11 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|+.|+|||||.+.|+.+++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999998875
No 408
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.60 E-value=0.06 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.||+|+|||++++.|++.++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999999875
No 409
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=93.58 E-value=0.3 Score=59.79 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCChHHHHH
Q 007444 115 EIGGIAISGRRGTAKTVMA 133 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lA 133 (603)
..+++++.||||+|||++.
T Consensus 1493 t~R~~i~cGppGSgK~mlM 1511 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLM 1511 (3164)
T ss_pred ccceEEEECCCCCccchhc
Confidence 3578999999999999864
No 410
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.55 E-value=0.071 Score=42.37 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-.+|.|+.|+||||+.-++.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 499999999999999999988774
No 411
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.55 E-value=0.063 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|++.|++|+|||+|++.+...-
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999764
No 412
>PRK13685 hypothetical protein; Provisional
Probab=93.54 E-value=0.057 Score=57.30 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=34.4
Q ss_pred cCCcEEEEEEeCCchhhhh-----hhhHHhHHHHHHhhcccc-ccccccC
Q 007444 559 KAGALVGLMFSVLILQLIL-----LPFQEEKGKRMKLIFPQK-PSCIFYS 602 (603)
Q Consensus 559 ~~~~l~ifvvDaS~gSma~-----~Rm~~aKgav~~lL~da~-~~~~~~~ 602 (603)
+.+.-++||||.| |||.. .||..||.++..++..-. .+|+.++
T Consensus 86 ~~~~~vvlvlD~S-~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv 134 (326)
T PRK13685 86 RNRAVVMLVIDVS-QSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLI 134 (326)
T ss_pred CCCceEEEEEECC-ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 3456799999999 99965 599999999999997753 5566543
No 413
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.52 E-value=0.13 Score=64.54 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=23.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTE 250 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~ 250 (603)
+.+|||||...++...+..|+..+..
T Consensus 931 ~~llIVDEASMV~~~~m~~ll~~~~~ 956 (1623)
T PRK14712 931 NTLFLLDESSMVGNTDMARAYALIAA 956 (1623)
T ss_pred CcEEEEEccccccHHHHHHHHHhhhh
Confidence 57999999999999999999998864
No 414
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.50 E-value=0.15 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
..||+||.|..|+||.+++|..+...
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFIC 55 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHh
Confidence 46899999999999999999777664
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.50 E-value=0.055 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|.+|+||||+++.|+..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 416
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.35 E-value=0.065 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHHh
Q 007444 119 IAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (603)
+||.|+||||||+++..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999877654
No 417
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.33 E-value=0.043 Score=55.61 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=23.8
Q ss_pred EECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 121 ISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 121 L~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
+.||+|+||||+++++.+.+.... ...+.+|.||.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~-~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG-RDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCceEEEcchH
Confidence 479999999999999999986432 23445566654
No 418
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.32 E-value=0.095 Score=51.16 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=23.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCCCCeee
Q 007444 119 IAISGRRGTAKTVMARGLHAILPPIEVV 146 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~~ 146 (603)
|.|.|.+|+||||+|+.|+..++....+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998654443
No 419
>PRK04182 cytidylate kinase; Provisional
Probab=93.28 E-value=0.075 Score=50.52 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|.+|+||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998874
No 420
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.22 E-value=0.075 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-++|.|++|+||||+++.|+.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999875
No 421
>PLN02165 adenylate isopentenyltransferase
Probab=93.21 E-value=0.096 Score=55.51 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=25.3
Q ss_pred hccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 112 IDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 112 v~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.++...-|+|.||+|+|||+|+..|+..++
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 344445699999999999999999999875
No 422
>PRK06696 uridine kinase; Validated
Probab=93.20 E-value=0.064 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
=|.|.|++|+||||+|+.|+..++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999999885
No 423
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.16 E-value=0.1 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|+||+|||||.+|-.+++..+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g 26 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTG 26 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-
T ss_pred EEEECCCCCChhHHHHHHHHHhC
Confidence 68999999999999999999873
No 424
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.15 E-value=0.081 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+|||++++.|+..++
T Consensus 3 I~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998774
No 425
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=93.15 E-value=0.21 Score=55.31 Aligned_cols=42 Identities=26% Similarity=0.088 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 100 q~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
|+++..++.-..-. .+..+|.-|+|+|||.++-.+...+...
T Consensus 41 Q~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~ 82 (442)
T COG1061 41 QEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS 82 (442)
T ss_pred HHHHHHHHHhhccc--CCceEEEeCCCCCHHHHHHHHHHHhcCC
Confidence 55566666543222 4567778899999999999888887653
No 426
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=93.05 E-value=0.14 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-|+|+||++||||.|+.+|+..++
T Consensus 113 rNti~~~Gp~~tGKt~la~aI~~~~~ 138 (271)
T PF01057_consen 113 RNTIWFYGPASTGKTNLADAIANAVP 138 (271)
T ss_dssp --EEEEESTTTSSHCHCHHCCCHHSC
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 45599999999999999999999876
No 427
>PRK14526 adenylate kinase; Provisional
Probab=93.04 E-value=0.08 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+++.|+..+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 428
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.02 E-value=0.082 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..++|.||.|+|||+|.+.++.+.++
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 45999999999999999999998764
No 429
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.95 E-value=0.26 Score=54.19 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=33.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
-|+|.|++|+||||++..|+..+.... ...+.+.||+..+.+|..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G-~kV~lV~~D~~R~aA~eQ 146 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG-FKPCLVCADTFRAGAFDQ 146 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEcCcccchhHHHH
Confidence 489999999999999999988764221 234567888887777654
No 430
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.93 E-value=0.076 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|+..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 431
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.90 E-value=0.085 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHh
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (603)
...+|||.|++|+|||+++..+...
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5678999999999999999887764
No 432
>PRK13975 thymidylate kinase; Provisional
Probab=92.86 E-value=0.087 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|++.+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999885
No 433
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.79 E-value=0.19 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-++|.||.|+||||+.+.|+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 45999999999999999999843
No 434
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.75 E-value=0.096 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|.||+||||+++.|+..+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999874
No 435
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.67 E-value=0.13 Score=63.78 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCCCCcccccHHHHHHHHH--hhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQDAIKTALLL--GAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l--aav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
...+.++||.+..++.+.. ..-.....-|-|+|+.|+||||||++++..+
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 4568899999987777732 1112233448999999999999999998765
No 436
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.66 E-value=0.33 Score=47.40 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=30.6
Q ss_pred cCceEEecccccC-CHH-----HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccccc
Q 007444 224 HRGVLYIDEINLL-DEG-----ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 224 ~~gIL~IDEi~~l-~~~-----~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~ 296 (603)
.+++++|||+... +.. -....+..+...+ |- .+-+|.+|. ....++..+.+..+.++.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR-----------h~-g~diiliTQ-~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR-----------HY-GWDIILITQ-SPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCC-----------CT-T-EEEEEES--GGGB-HHHHCCEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhC-----------cC-CcEEEEEeC-CHHHHhHHHHHHHheEEEEE
Confidence 5789999999865 111 1122335555443 11 233444444 66778888877666665443
No 437
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.62 E-value=0.17 Score=53.67 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCCccccc---HHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQ---DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq---~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+++++++.. +.....++..++. ..++++|.|++|+||||++++|...+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~-~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVR-AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHH-cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4556666421 1222233333443 35789999999999999999999764
No 438
>PRK06851 hypothetical protein; Provisional
Probab=92.62 E-value=0.12 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|.|+|||||||+++.++..+.
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 439
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.61 E-value=0.087 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
--|-|.||+|||||||.|.|+.+..+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34999999999999999999999865
No 440
>PRK06761 hypothetical protein; Provisional
Probab=92.60 E-value=0.14 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..+.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999885
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.60 E-value=0.15 Score=53.76 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=25.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
....++|.|++|+||||+++++..++++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 4578999999999999999999998874
No 442
>PRK10867 signal recognition particle protein; Provisional
Probab=92.59 E-value=0.12 Score=56.99 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=30.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
-|++.|++|+||||++..|+..+....-.....+.||+..+.++
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHH
Confidence 38999999999999888888765322112234577887766554
No 443
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.53 E-value=0.089 Score=58.75 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=25.9
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
|.+.++||.||.|||||+|.|.++.+.|
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 4678899999999999999999999987
No 444
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.47 E-value=0.14 Score=52.50 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.7
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHh
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~ 139 (603)
...+-|.|+|.+|+|||+||+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45566999999999999999998865
No 445
>PF13479 AAA_24: AAA domain
Probab=92.42 E-value=0.073 Score=52.90 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=18.1
Q ss_pred CcEEEECCCCChHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGL 136 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lAral 136 (603)
-.+||||+||+|||+++..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35899999999999999887
No 446
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.36 E-value=0.19 Score=45.63 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...-|+|.|+=|+|||+++|++++.+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 334599999999999999999999985
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.33 E-value=0.13 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
..+-|+|.||+|+||||+++++...+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999999876
No 448
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.31 E-value=0.099 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|-|.|++|+||||+++.|...+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999874
No 449
>PTZ00293 thymidine kinase; Provisional
Probab=92.31 E-value=0.52 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.5
Q ss_pred EEEECCCCChHHH-HHHHHHHhC
Q 007444 119 IAISGRRGTAKTV-MARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~-lArala~~l 140 (603)
.+++||.++|||+ |.+.++...
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHH
Confidence 6889999999998 999988764
No 450
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=92.18 E-value=0.72 Score=54.92 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=37.4
Q ss_pred ccccCCCCCCCCcccccHHHHHHH--HHhhh-----------ccCCC---cEEEECCCCChHHHHHHHHHHhCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTAL--LLGAI-----------DREIG---GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL--~laav-----------~p~~~---gVLL~GppGTGKT~lArala~~l~ 141 (603)
-...++.+....+++|......-+ -++.. .|... -+|++|+||+|||+.+..++..+.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g 382 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG 382 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc
Confidence 334456677777888866444333 12111 12111 269999999999999999998875
No 451
>PRK07667 uridine kinase; Provisional
Probab=92.14 E-value=0.11 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.=|.|.|++|+||||+++.|+..+.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999999874
No 452
>PRK01184 hypothetical protein; Provisional
Probab=92.10 E-value=0.12 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|+|.|+||+||||+++ +++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 37899999999999998 45544
No 453
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.09 E-value=0.092 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.2
Q ss_pred EECCCCChHHHHHHHHHHhCC
Q 007444 121 ISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 121 L~GppGTGKT~lArala~~l~ 141 (603)
|.||||+||||+++.|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 679999999999999999874
No 454
>PLN02674 adenylate kinase
Probab=92.08 E-value=0.14 Score=52.06 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=23.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...|+|.|+||+||+|+++.|+..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999764
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.08 E-value=0.092 Score=47.67 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...+.|.|+.|+|||||.++|+...+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45699999999999999999998875
No 456
>PRK12338 hypothetical protein; Provisional
Probab=92.07 E-value=0.13 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|.||+||||+|+.|+..++
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Confidence 489999999999999999999985
No 457
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=91.98 E-value=0.34 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-++|.||.|+|||++.|.++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999753
No 458
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.95 E-value=0.12 Score=49.17 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=27.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
+++.|+||+|||++++.++..+.... .....++||+..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g-~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG-KKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCCCCh
Confidence 68999999999999999987764221 1223456666543
No 459
>PRK14529 adenylate kinase; Provisional
Probab=91.93 E-value=0.13 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+++.|+..+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999998874
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.91 E-value=0.13 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..-+.|.||.|+|||||++.|+.++++
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 345899999999999999999998763
No 461
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.84 E-value=0.12 Score=45.66 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.2
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala 137 (603)
..+.|.||+|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 459999999999999999976
No 462
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.82 E-value=0.13 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-|.|.|.+|+||||+++.|+..+.
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34599999999999999999998764
No 463
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.80 E-value=0.14 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-|+|.||+|+|||+|++.|....|.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 45899999999999999999887654
No 464
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.74 E-value=0.13 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|+.|+||||+++.|++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 465
>PRK10646 ADP-binding protein; Provisional
Probab=91.73 E-value=0.45 Score=44.90 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+=|+||||++|++++.+.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999885
No 466
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.71 E-value=0.27 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.1
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
+.++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999983
No 467
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=91.69 E-value=0.064 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+|+.|||.-|||||+|.-.+...+++
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~ 140 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPP 140 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCc
Confidence 578999999999999999999987764
No 468
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.68 E-value=0.12 Score=59.58 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=72.8
Q ss_pred EEEECCCCChHHHHHHHHHHhCCCC-eeeccccccCCCCCCCcccccccccc---------------ccccccccccc--
Q 007444 119 IAISGRRGTAKTVMARGLHAILPPI-EVVVGSIANADPTCPDEWEDGLDEKA---------------EYDTAGNLKTQ-- 180 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~~-~~~~~~~~n~~~~~~~~~~~~~~~~i---------------~~~~~~~~~~~-- 180 (603)
.-|-||.|+|||||..+|+...+.- ..-..-.+|..+.++..|...+.=-. .+...-.++..
T Consensus 59 ~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~ 138 (613)
T KOG0061|consen 59 LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLS 138 (613)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCC
Confidence 7788999999999999999988763 33333347776776666643222100 00000000000
Q ss_pred ------ccCCCeEEcCCCCccccccccccchhccccCccccc-ccchhcccCceEEeccccc-CCH----HHHHHHHHHH
Q 007444 181 ------IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQ-PGLLAEAHRGVLYIDEINL-LDE----GISNLLLNVL 248 (603)
Q Consensus 181 ------~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~-~Gll~~A~~gIL~IDEi~~-l~~----~~~~~LL~~l 248 (603)
..+.-.-++......+.++|..+. +++..|+++-. -|.--.-+..|||+||--. |+. .++..|-+..
T Consensus 139 ~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~-rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 139 KEEKRERVEEVISELGLEKCADTLIGNPGI-RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred HHHHHHHHHHHHHHcCChhhccceecCCCC-CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 000001113333446678887776 77877776432 2222234678999999853 444 3444444444
Q ss_pred HcCc
Q 007444 249 TEGV 252 (603)
Q Consensus 249 ~~g~ 252 (603)
.+|+
T Consensus 218 ~~gr 221 (613)
T KOG0061|consen 218 RSGR 221 (613)
T ss_pred hCCC
Confidence 5454
No 469
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=91.67 E-value=0.53 Score=50.68 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.6
Q ss_pred ccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 113 DREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 113 ~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|...=++|+|||.||||+++-.|-+.+.
T Consensus 259 ~PKKnClvi~GPPdTGKS~F~~SLi~Fl~ 287 (432)
T PF00519_consen 259 IPKKNCLVIYGPPDTGKSMFCMSLIKFLK 287 (432)
T ss_dssp BTTSSEEEEESSCCCSHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCchhHHHHHHHHHhC
Confidence 35555599999999999999999988874
No 470
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.62 E-value=0.12 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|.|.||.|+|||||.|+|-.+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 348999999999999999998764
No 471
>PRK08356 hypothetical protein; Provisional
Probab=91.61 E-value=0.14 Score=49.92 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-|+|.|+||+||||+++.|..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999964
No 472
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.61 E-value=0.21 Score=49.39 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|.||.|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 449999999999999999987553
No 473
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.59 E-value=0.14 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|++.+.
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.55 E-value=0.16 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+-|.||.|+|||||.|+|+.++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455889999999999999999999875
No 475
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.49 E-value=0.15 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-++|.|++|+||||+++.|...+.
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998874
No 476
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.44 E-value=0.33 Score=51.14 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|.+|+|||++++.|+..+
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999887
No 477
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=91.43 E-value=3.1 Score=42.27 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=46.2
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCC
Q 007444 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLP 298 (603)
Q Consensus 224 ~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p 298 (603)
+.-|++|++++.|..+..|+||..+++.. .+..+|-.++ ....+.+-+++|+-.. .+..|
T Consensus 89 ~~KViII~~ae~mt~~AANALLKtLEEPP-------------~~t~fILit~-~~~~LLpTIrSRCq~i-~~~~p 148 (263)
T PRK06581 89 GYKVAIIYSAELMNLNAANSCLKILEDAP-------------KNSYIFLITS-RAASIISTIRSRCFKI-NVRSS 148 (263)
T ss_pred CcEEEEEechHHhCHHHHHHHHHhhcCCC-------------CCeEEEEEeC-ChhhCchhHhhceEEE-eCCCC
Confidence 44599999999999999999999999853 3444555444 5677788999998766 66644
No 478
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.41 E-value=0.14 Score=45.09 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHH
Q 007444 119 IAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~ 138 (603)
|+|.|.+|+|||||.++|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 479
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.15 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~ 142 (603)
-+.|.|+.|+|||||++.|+.++++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999998763
No 480
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.39 E-value=0.3 Score=51.25 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=27.9
Q ss_pred hhhccCCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 110 GAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 110 aav~p~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
=.++|....|++.|.|-+|||+|++.|...-|.
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE 194 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE 194 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc
Confidence 346777788999999999999999999877653
No 481
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.37 E-value=0.15 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.|+.|+|||||++.|+.++++
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44889999999999999999998753
No 482
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.36 E-value=0.13 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+=|.|+.|||||||+|+|+.+..+
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 34779999999999999999998764
No 483
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.36 E-value=2.2 Score=43.42 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=22.4
Q ss_pred EEEECCCCChHHHHHHHHHHhCCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~~ 142 (603)
|||-|.+|+||||+|.-+|..|.=
T Consensus 92 ILIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 92 ILIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred EEecCCCCCChhHHHHHHHHHcCC
Confidence 899999999999999999999863
No 484
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.35 E-value=0.11 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|+.|+|||||++.|...+.
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999998875
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.24 E-value=0.17 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...+.|.|+.|+|||||++.|+.++++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456999999999999999999998864
No 486
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.51 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
....+-|.|+.|+||||++..|...+++
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 4567999999999999999999999984
No 487
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.23 E-value=0.18 Score=49.70 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+..+.|.|+.|+|||||.+.|+.++++
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998753
No 488
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.20 E-value=0.18 Score=49.38 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+..+.|.|+.|+|||||.+.|+.++++
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345899999999999999999998753
No 489
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.19 E-value=0.42 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|=||+.||+|+||||..-++-.++.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 346699999999999999888888764
No 490
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.18 E-value=0.2 Score=56.62 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=38.6
Q ss_pred ccCceEEeccc-ccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhccccc
Q 007444 223 AHRGVLYIDEI-NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLS 294 (603)
Q Consensus 223 A~~gIL~IDEi-~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~ 294 (603)
....+|++||= |.|+-+....|-.++.+-. | .||..+. +..|+++..-.+-
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~------G---------tvl~VSH------Dr~Fl~~va~~i~ 507 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFE------G---------TVLLVSH------DRYFLDRVATRIW 507 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCC------C---------eEEEEeC------CHHHHHhhcceEE
Confidence 35679999997 8899999999999998753 1 3555566 6788888765543
No 491
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.16 E-value=0.16 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|+|.||+|+||||+++.|....
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcC
Confidence 448899999999999999998654
No 492
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.13 E-value=0.32 Score=63.08 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (603)
+|..+...++...- .-++|.|++|||||++++.+...+..
T Consensus 433 ~Q~~Av~~il~s~~----~v~ii~G~aGTGKTt~l~~l~~~~~~------------------------------------ 472 (1960)
T TIGR02760 433 SNKDAVSTLFTSTK----RFIIINGFGGTGSTEIAQLLLHLASE------------------------------------ 472 (1960)
T ss_pred HHHHHHHHHHhCCC----CeEEEEECCCCCHHHHHHHHHHHHHh------------------------------------
Q ss_pred ccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-----------------ccCceEEecccccCCHHHH
Q 007444 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-----------------AHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 179 ~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-----------------A~~gIL~IDEi~~l~~~~~ 241 (603)
.+..++-+.+......-++. +-+.......-.-+.+.. ..+.+|+|||...++....
T Consensus 473 ---~G~~V~~lAPTgrAA~~L~e---~~g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~ 546 (1960)
T TIGR02760 473 ---QGYEIQIITAGSLSAQELRQ---KIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNEL 546 (1960)
T ss_pred ---cCCeEEEEeCCHHHHHHHHH---HhcchhhhHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHH
Q ss_pred HHHHHHH-HcCceeEeeCCeeeEecCCcEEEE
Q 007444 242 NLLLNVL-TEGVNIVEREGISFKHPCKPLLIA 272 (603)
Q Consensus 242 ~~LL~~l-~~g~~~v~r~G~s~~~p~~~~lIa 272 (603)
..|+... ..+. ++++||
T Consensus 547 ~~Ll~~a~~~ga--------------rvVlvG 564 (1960)
T TIGR02760 547 LKLIDKAEQHNS--------------KLILLN 564 (1960)
T ss_pred HHHHHHHhhcCC--------------EEEEEc
No 493
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.10 E-value=0.18 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.||.|+|||||++.|+.++++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 346999999999999999999998764
No 494
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.10 E-value=0.16 Score=50.19 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..-+.|.|+.|+|||||.+.|+.++++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345899999999999999999998753
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.08 E-value=0.2 Score=48.04 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...+.|.|+.|+|||||++.|+.+.++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456899999999999999999998764
No 496
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=91.05 E-value=0.16 Score=60.08 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=31.5
Q ss_pred cEEEEEEeCCchhhhh-hhhHHhHHHHHHhhcccc--ccccccC
Q 007444 562 ALVGLMFSVLILQLIL-LPFQEEKGKRMKLIFPQK--PSCIFYS 602 (603)
Q Consensus 562 ~l~ifvvDaS~gSma~-~Rm~~aKgav~~lL~da~--~~~~~~~ 602 (603)
+.++||+|.| |||.. .||..+|-|+..+|.+.. .|+|.++
T Consensus 305 r~VVLVLDvS-GSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLV 347 (863)
T TIGR00868 305 RIVCLVLDKS-GSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMV 347 (863)
T ss_pred ceEEEEEECC-ccccccCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 5799999999 99976 799999999888776653 4666543
No 497
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.98 E-value=0.24 Score=47.72 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+.|+|.||+|+|||+|++.|....|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 367999999999999999999998863
No 498
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.94 E-value=0.17 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.|+.|+|||||++.|+.++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45899999999999999999998764
No 499
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.94 E-value=0.17 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|+.|+|||||++.|+.+++
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999999875
No 500
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.89 E-value=0.17 Score=50.62 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.|+.|+|||||++.|+.++++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 346999999999999999999998864
Done!