Query 007444
Match_columns 603
No_of_seqs 426 out of 2578
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 01:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8p_A Magnesium-chelatase 38 100.0 3.7E-38 1.3E-42 331.3 28.9 313 89-410 18-330 (350)
2 2r44_A Uncharacterized protein 100.0 2.2E-28 7.7E-33 256.0 21.6 259 91-408 23-303 (331)
3 3f8t_A Predicted ATPase involv 100.0 3.8E-28 1.3E-32 261.4 18.5 239 97-404 215-485 (506)
4 3f9v_A Minichromosome maintena 99.9 2.6E-27 8.8E-32 267.1 14.0 259 95-402 295-587 (595)
5 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 1.1E-26 3.7E-31 256.1 17.9 260 95-408 22-291 (500)
6 1ojl_A Transcriptional regulat 99.9 4.3E-24 1.5E-28 221.9 15.1 230 96-396 3-246 (304)
7 2bjv_A PSP operon transcriptio 99.9 4.9E-24 1.7E-28 216.1 15.1 233 92-395 3-250 (265)
8 1ny5_A Transcriptional regulat 99.9 2.7E-23 9.1E-28 222.9 18.7 233 94-397 136-382 (387)
9 3dzd_A Transcriptional regulat 99.9 2.6E-22 8.9E-27 213.8 15.4 217 95-380 129-359 (368)
10 3k1j_A LON protease, ATP-depen 99.9 1.5E-21 5.1E-26 220.9 21.0 286 87-401 33-374 (604)
11 4b4t_J 26S protease regulatory 99.9 1.4E-21 4.7E-26 208.5 16.8 220 86-404 139-391 (405)
12 3pfi_A Holliday junction ATP-d 99.9 1.1E-20 3.8E-25 197.8 19.3 226 83-401 17-253 (338)
13 4b4t_I 26S protease regulatory 99.9 4E-21 1.4E-25 205.6 15.6 220 87-405 174-426 (437)
14 4b4t_H 26S protease regulatory 99.8 9.2E-21 3.2E-25 204.6 15.7 219 88-405 202-453 (467)
15 4b4t_M 26S protease regulatory 99.8 5.6E-21 1.9E-25 206.5 12.4 218 88-404 174-424 (434)
16 4b4t_L 26S protease subunit RP 99.8 1.5E-20 5.2E-25 203.2 15.7 219 88-405 174-425 (437)
17 4b4t_K 26S protease regulatory 99.8 2.9E-20 9.9E-25 200.7 16.4 221 88-406 165-418 (428)
18 1ofh_A ATP-dependent HSL prote 99.8 1.5E-19 5.1E-24 185.8 15.1 244 95-402 15-299 (310)
19 1um8_A ATP-dependent CLP prote 99.8 9.7E-20 3.3E-24 194.0 11.8 246 96-404 22-367 (376)
20 1lv7_A FTSH; alpha/beta domain 99.8 4.8E-19 1.6E-23 178.4 16.1 219 88-405 5-255 (257)
21 3vfd_A Spastin; ATPase, microt 99.8 7.2E-19 2.5E-23 188.3 18.4 223 84-401 104-364 (389)
22 3h4m_A Proteasome-activating n 99.8 1.4E-19 4.7E-24 184.8 12.0 222 89-406 11-262 (285)
23 3hws_A ATP-dependent CLP prote 99.8 1.4E-19 4.9E-24 191.8 9.3 239 97-398 17-345 (363)
24 3uk6_A RUVB-like 2; hexameric 99.8 4.2E-18 1.4E-22 180.0 20.0 144 225-406 190-334 (368)
25 1hqc_A RUVB; extended AAA-ATPa 99.8 2E-18 6.7E-23 179.1 17.1 222 88-402 5-238 (324)
26 3eie_A Vacuolar protein sortin 99.8 4.6E-19 1.6E-23 185.1 12.2 199 88-382 11-235 (322)
27 2qp9_X Vacuolar protein sortin 99.8 2.5E-18 8.5E-23 182.2 16.7 202 87-384 43-270 (355)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.3E-18 4.5E-23 174.8 13.8 220 91-407 2-254 (262)
29 3b9p_A CG5977-PA, isoform A; A 99.8 1.5E-17 5E-22 170.9 19.7 219 88-400 14-270 (297)
30 2r62_A Cell division protease 99.8 1.3E-19 4.3E-24 183.6 3.6 223 89-409 5-260 (268)
31 2c9o_A RUVB-like 1; hexameric 99.8 1E-17 3.5E-22 183.3 19.0 131 226-404 297-439 (456)
32 3syl_A Protein CBBX; photosynt 99.8 1.4E-18 4.7E-23 179.3 11.2 213 96-396 32-280 (309)
33 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.2E-17 1.1E-21 171.4 21.1 159 89-310 6-190 (322)
34 3d8b_A Fidgetin-like protein 1 99.8 1.1E-17 3.9E-22 177.2 17.8 162 87-311 76-263 (357)
35 3pvs_A Replication-associated 99.7 2.7E-18 9.2E-23 187.2 12.0 221 84-400 15-242 (447)
36 4fcw_A Chaperone protein CLPB; 99.7 6.5E-18 2.2E-22 174.2 13.9 214 95-377 17-273 (311)
37 2ce7_A Cell division protein F 99.7 1.4E-17 4.8E-22 182.4 16.1 216 90-404 11-258 (476)
38 2dhr_A FTSH; AAA+ protein, hex 99.7 1.4E-17 5E-22 183.3 13.7 219 90-406 26-275 (499)
39 3cf0_A Transitional endoplasmi 99.7 1.1E-17 3.6E-22 173.2 11.2 158 89-311 9-198 (301)
40 2zan_A Vacuolar protein sortin 99.7 9.2E-17 3.2E-21 175.1 19.2 162 86-310 125-312 (444)
41 3pxi_A Negative regulator of g 99.7 4.2E-17 1.4E-21 189.1 17.4 203 95-370 491-715 (758)
42 3n70_A Transport activator; si 99.7 1.6E-17 5.5E-22 153.2 10.5 135 96-300 2-144 (145)
43 3hu3_A Transitional endoplasmi 99.7 1.3E-17 4.4E-22 183.7 11.6 215 90-403 199-460 (489)
44 1r6b_X CLPA protein; AAA+, N-t 99.7 5.3E-17 1.8E-21 188.2 16.4 221 95-378 458-711 (758)
45 3co5_A Putative two-component 99.7 1.7E-17 5.7E-22 152.9 5.5 132 96-300 5-142 (143)
46 1sxj_D Activator 1 41 kDa subu 99.7 6.8E-16 2.3E-20 161.5 18.5 235 81-400 23-261 (353)
47 3m6a_A ATP-dependent protease 99.7 9.4E-17 3.2E-21 179.3 11.1 234 94-399 80-338 (543)
48 2chg_A Replication factor C sm 99.7 1.8E-15 6.3E-20 146.1 17.7 216 87-400 9-224 (226)
49 1ixz_A ATP-dependent metallopr 99.7 4.1E-16 1.4E-20 156.7 12.4 212 89-399 10-253 (254)
50 3cf2_A TER ATPase, transitiona 99.7 4.4E-17 1.5E-21 187.8 5.7 157 88-309 470-658 (806)
51 1qvr_A CLPB protein; coiled co 99.6 5.3E-16 1.8E-20 182.1 14.5 214 94-376 557-813 (854)
52 1g41_A Heat shock protein HSLU 99.6 3.8E-15 1.3E-19 161.3 19.0 157 221-400 246-431 (444)
53 1iy2_A ATP-dependent metallopr 99.6 7E-16 2.4E-20 157.3 12.6 211 90-399 35-277 (278)
54 3bos_A Putative DNA replicatio 99.6 1E-14 3.4E-19 143.5 19.2 208 91-400 24-241 (242)
55 1in4_A RUVB, holliday junction 99.6 1.8E-14 6.2E-19 151.1 21.8 223 88-403 18-251 (334)
56 3u61_B DNA polymerase accessor 99.6 2.8E-15 9.7E-20 155.8 13.8 219 82-399 13-234 (324)
57 3cf2_A TER ATPase, transitiona 99.6 3.5E-16 1.2E-20 180.3 6.3 157 89-310 198-383 (806)
58 2x8a_A Nuclear valosin-contain 99.6 5.7E-15 2E-19 150.8 13.7 157 89-310 4-189 (274)
59 1iqp_A RFCS; clamp loader, ext 99.6 8E-15 2.7E-19 151.4 12.5 218 83-398 13-230 (327)
60 2z4s_A Chromosomal replication 99.6 1.6E-14 5.4E-19 157.3 15.2 220 90-402 100-332 (440)
61 3pxg_A Negative regulator of g 99.6 1.7E-14 5.8E-19 158.2 15.3 222 87-399 172-403 (468)
62 2v1u_A Cell division control p 99.6 7.6E-14 2.6E-18 147.1 19.3 240 92-402 16-276 (387)
63 1l8q_A Chromosomal replication 99.6 8.2E-15 2.8E-19 152.5 11.2 218 90-402 6-240 (324)
64 1fnn_A CDC6P, cell division co 99.6 1.6E-13 5.3E-18 145.2 20.9 246 92-404 14-276 (389)
65 1njg_A DNA polymerase III subu 99.5 1E-13 3.5E-18 135.2 17.2 235 85-399 13-248 (250)
66 1sxj_A Activator 1 95 kDa subu 99.5 1.2E-13 3.9E-18 153.4 17.4 222 82-403 26-275 (516)
67 2chq_A Replication factor C sm 99.5 3.8E-14 1.3E-18 145.8 11.6 218 84-399 6-223 (319)
68 1jr3_A DNA polymerase III subu 99.5 8.1E-13 2.8E-17 139.1 20.4 235 85-399 6-241 (373)
69 1r6b_X CLPA protein; AAA+, N-t 99.5 2.4E-13 8.1E-18 157.6 17.2 234 89-403 180-434 (758)
70 3pxi_A Negative regulator of g 99.5 1.5E-13 5.3E-18 159.2 15.4 210 88-385 173-388 (758)
71 1sxj_B Activator 1 37 kDa subu 99.5 5.3E-13 1.8E-17 137.4 17.0 221 83-400 9-229 (323)
72 2qby_B CDC6 homolog 3, cell di 99.5 1.7E-13 5.9E-18 144.9 13.4 133 226-403 135-271 (384)
73 3t15_A Ribulose bisphosphate c 99.5 2.9E-14 1E-18 146.9 6.5 137 116-309 36-195 (293)
74 2qby_A CDC6 homolog 1, cell di 99.5 1.1E-12 3.7E-17 138.1 18.4 242 92-403 17-273 (386)
75 1sxj_C Activator 1 40 kDa subu 99.5 4.2E-13 1.4E-17 140.7 15.0 226 81-399 11-236 (340)
76 1d2n_A N-ethylmaleimide-sensit 99.4 1.4E-13 4.8E-18 139.6 7.3 205 94-399 32-261 (272)
77 1sxj_E Activator 1 40 kDa subu 99.4 5.8E-12 2E-16 132.0 18.0 223 84-379 3-241 (354)
78 1qvr_A CLPB protein; coiled co 99.4 1E-12 3.6E-17 154.2 12.2 163 89-310 164-343 (854)
79 1jbk_A CLPB protein; beta barr 99.4 2.4E-13 8.2E-18 128.1 4.7 160 89-307 16-193 (195)
80 1ypw_A Transitional endoplasmi 99.4 7.2E-14 2.5E-18 162.7 0.0 158 88-310 470-659 (806)
81 2p65_A Hypothetical protein PF 99.3 4E-13 1.4E-17 126.5 4.5 155 89-298 16-186 (187)
82 3te6_A Regulatory protein SIR3 99.3 1.2E-11 4.2E-16 128.5 12.6 163 225-403 133-316 (318)
83 1ypw_A Transitional endoplasmi 99.2 9.9E-12 3.4E-16 144.8 9.0 157 89-310 198-383 (806)
84 1w5s_A Origin recognition comp 99.0 1.5E-09 5.1E-14 115.5 13.6 142 225-402 139-293 (412)
85 1a5t_A Delta prime, HOLB; zinc 99.0 7E-09 2.4E-13 108.5 18.0 170 99-308 6-176 (334)
86 4akg_A Glutathione S-transfera 98.9 3.5E-09 1.2E-13 135.2 13.5 85 225-312 1337-1431(2695)
87 4akg_A Glutathione S-transfera 98.9 6E-08 2E-12 124.0 21.5 139 116-314 645-795 (2695)
88 2gno_A DNA polymerase III, gam 98.8 1.8E-08 6.3E-13 104.1 12.7 151 99-311 1-151 (305)
89 3ec2_A DNA replication protein 98.7 1.4E-08 4.9E-13 96.0 4.9 52 89-140 4-62 (180)
90 3vkg_A Dynein heavy chain, cyt 98.6 6.1E-08 2.1E-12 124.7 11.6 146 115-309 1303-1466(3245)
91 2w58_A DNAI, primosome compone 98.5 2.1E-08 7.2E-13 96.4 1.1 52 90-141 20-79 (202)
92 2kjq_A DNAA-related protein; s 98.4 6E-07 2.1E-11 82.8 9.5 61 225-296 84-146 (149)
93 3vkg_A Dynein heavy chain, cyt 98.3 1.5E-06 5.1E-11 112.1 11.5 140 117-314 605-755 (3245)
94 2qgz_A Helicase loader, putati 98.2 2.5E-07 8.7E-12 95.6 2.3 50 91-140 120-176 (308)
95 1tue_A Replication protein E1; 98.0 1.1E-05 3.9E-10 78.2 8.7 29 113-141 55-83 (212)
96 1u0j_A DNA replication protein 97.8 3.4E-05 1.2E-09 77.8 8.5 28 114-141 102-129 (267)
97 2qen_A Walker-type ATPase; unk 97.8 4.3E-05 1.5E-09 78.6 9.3 46 93-140 10-55 (350)
98 2fna_A Conserved hypothetical 97.8 3.4E-05 1.1E-09 79.6 7.3 46 92-141 10-55 (357)
99 2r2a_A Uncharacterized protein 97.6 0.00011 3.7E-09 71.1 8.2 61 224-297 87-152 (199)
100 2orw_A Thymidine kinase; TMTK, 97.6 8E-05 2.7E-09 70.9 7.1 58 225-296 77-137 (184)
101 3upu_A ATP-dependent DNA helic 97.6 4.3E-05 1.5E-09 83.1 5.8 57 83-140 12-69 (459)
102 1jr3_D DNA polymerase III, del 97.6 0.00021 7.3E-09 74.2 10.4 128 224-402 76-209 (343)
103 3rag_A Uncharacterized protein 97.4 7.4E-05 2.5E-09 73.9 3.4 43 558-602 131-177 (242)
104 3e1s_A Exodeoxyribonuclease V, 97.1 0.00049 1.7E-08 76.9 7.0 25 116-140 204-228 (574)
105 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0012 4E-08 68.3 6.3 24 116-139 123-146 (331)
106 1w36_D RECD, exodeoxyribonucle 96.8 0.0029 9.9E-08 71.2 9.9 25 116-140 164-188 (608)
107 3jvv_A Twitching mobility prot 96.7 0.004 1.4E-07 65.4 9.2 26 116-141 123-148 (356)
108 2b8t_A Thymidine kinase; deoxy 96.5 0.0038 1.3E-07 61.2 7.2 27 225-251 90-116 (223)
109 3cmw_A Protein RECA, recombina 96.5 0.0023 7.8E-08 79.2 6.1 22 119-140 1085-1106(1706)
110 1qhx_A CPT, protein (chloramph 95.9 0.0044 1.5E-07 57.3 3.6 25 117-141 4-28 (178)
111 1kag_A SKI, shikimate kinase I 95.6 0.0067 2.3E-07 55.8 3.5 25 117-141 5-29 (173)
112 2fz4_A DNA repair protein RAD2 95.6 0.017 6E-07 56.7 6.7 25 117-141 109-133 (237)
113 2r8r_A Sensor protein; KDPD, P 95.6 0.034 1.2E-06 54.5 8.5 25 116-140 6-30 (228)
114 3trf_A Shikimate kinase, SK; a 95.5 0.0096 3.3E-07 55.4 4.3 25 116-140 5-29 (185)
115 3kb2_A SPBC2 prophage-derived 95.5 0.0067 2.3E-07 55.5 3.0 24 118-141 3-26 (173)
116 2ewv_A Twitching motility prot 95.3 0.032 1.1E-06 58.8 7.9 26 116-141 136-161 (372)
117 3vaa_A Shikimate kinase, SK; s 95.3 0.013 4.4E-07 55.7 4.4 25 116-140 25-49 (199)
118 1via_A Shikimate kinase; struc 95.2 0.0093 3.2E-07 55.2 3.1 24 118-141 6-29 (175)
119 1ly1_A Polynucleotide kinase; 95.2 0.01 3.5E-07 54.7 3.2 21 118-138 4-24 (181)
120 2iyv_A Shikimate kinase, SK; t 95.1 0.014 4.6E-07 54.4 4.0 23 118-140 4-26 (184)
121 1zuh_A Shikimate kinase; alpha 95.0 0.016 5.4E-07 53.2 4.1 24 117-140 8-31 (168)
122 1xx6_A Thymidine kinase; NESG, 95.0 0.035 1.2E-06 52.9 6.5 27 226-252 83-109 (191)
123 3lw7_A Adenylate kinase relate 94.9 0.014 4.8E-07 53.1 3.4 23 118-141 3-25 (179)
124 2ze6_A Isopentenyl transferase 94.9 0.018 6.2E-07 57.2 4.3 24 118-141 3-26 (253)
125 1kht_A Adenylate kinase; phosp 94.8 0.013 4.3E-07 54.6 3.0 25 117-141 4-28 (192)
126 3iij_A Coilin-interacting nucl 94.8 0.016 5.3E-07 53.9 3.5 25 117-141 12-36 (180)
127 1nks_A Adenylate kinase; therm 94.8 0.012 4E-07 54.9 2.6 24 118-141 3-26 (194)
128 3t61_A Gluconokinase; PSI-biol 94.7 0.013 4.6E-07 55.5 2.9 25 117-141 19-43 (202)
129 1e6c_A Shikimate kinase; phosp 94.7 0.016 5.3E-07 53.2 3.1 24 118-141 4-27 (173)
130 3uie_A Adenylyl-sulfate kinase 94.7 0.014 4.9E-07 55.4 2.9 26 116-141 25-50 (200)
131 2rhm_A Putative kinase; P-loop 94.6 0.013 4.6E-07 54.6 2.6 25 117-141 6-30 (193)
132 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.1E-07 55.1 3.5 24 118-141 2-25 (216)
133 3cm0_A Adenylate kinase; ATP-b 94.6 0.016 5.6E-07 53.8 3.1 24 118-141 6-29 (186)
134 1zp6_A Hypothetical protein AT 94.6 0.013 4.4E-07 54.8 2.3 24 117-140 10-33 (191)
135 2vli_A Antibiotic resistance p 94.6 0.014 4.8E-07 54.1 2.5 25 117-141 6-30 (183)
136 4eun_A Thermoresistant glucoki 94.6 0.016 5.5E-07 55.0 3.0 25 117-141 30-54 (200)
137 1tev_A UMP-CMP kinase; ploop, 94.6 0.018 6E-07 53.7 3.1 24 118-141 5-28 (196)
138 3cmu_A Protein RECA, recombina 94.5 0.041 1.4E-06 69.1 7.2 26 115-140 1426-1451(2050)
139 1y63_A LMAJ004144AAA protein; 94.5 0.022 7.5E-07 53.3 3.7 25 116-140 10-34 (184)
140 1knq_A Gluconate kinase; ALFA/ 94.5 0.017 5.8E-07 53.3 2.9 25 117-141 9-33 (175)
141 1ye8_A Protein THEP1, hypothet 94.5 0.017 6E-07 54.2 3.0 24 118-141 2-25 (178)
142 2cdn_A Adenylate kinase; phosp 94.5 0.018 6.2E-07 54.5 3.1 24 118-141 22-45 (201)
143 2plr_A DTMP kinase, probable t 94.5 0.018 6.2E-07 54.5 3.1 24 118-141 6-29 (213)
144 1kgd_A CASK, peripheral plasma 94.5 0.022 7.4E-07 53.2 3.6 25 117-141 6-30 (180)
145 3tr0_A Guanylate kinase, GMP k 94.5 0.021 7.3E-07 53.8 3.5 24 118-141 9-32 (205)
146 3fb4_A Adenylate kinase; psych 94.4 0.019 6.4E-07 54.9 3.1 24 118-141 2-25 (216)
147 2qor_A Guanylate kinase; phosp 94.4 0.022 7.5E-07 54.2 3.5 25 117-141 13-37 (204)
148 2pt5_A Shikimate kinase, SK; a 94.3 0.021 7.2E-07 52.1 3.1 24 118-141 2-25 (168)
149 2j9r_A Thymidine kinase; TK1, 94.3 0.09 3.1E-06 51.0 7.7 27 226-252 103-129 (214)
150 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7.2E-07 53.6 3.1 24 118-141 2-25 (205)
151 2c95_A Adenylate kinase 1; tra 94.3 0.019 6.7E-07 53.6 2.8 25 117-141 10-34 (196)
152 2bwj_A Adenylate kinase 5; pho 94.3 0.019 6.6E-07 53.8 2.7 25 117-141 13-37 (199)
153 3tau_A Guanylate kinase, GMP k 94.2 0.027 9.4E-07 53.9 3.8 27 116-142 8-34 (208)
154 1gvn_B Zeta; postsegregational 94.2 0.023 7.8E-07 57.6 3.2 24 118-141 35-58 (287)
155 1qf9_A UMP/CMP kinase, protein 94.2 0.021 7.2E-07 53.1 2.7 24 118-141 8-31 (194)
156 1aky_A Adenylate kinase; ATP:A 94.2 0.023 8E-07 54.6 3.1 25 117-141 5-29 (220)
157 1zd8_A GTP:AMP phosphotransfer 94.1 0.024 8.4E-07 54.8 3.2 25 117-141 8-32 (227)
158 1ex7_A Guanylate kinase; subst 94.1 0.031 1.1E-06 53.1 3.7 25 117-141 2-26 (186)
159 2j41_A Guanylate kinase; GMP, 94.0 0.026 8.9E-07 53.2 3.0 24 117-140 7-30 (207)
160 1ukz_A Uridylate kinase; trans 94.0 0.031 1.1E-06 52.8 3.5 24 118-141 17-40 (203)
161 1zak_A Adenylate kinase; ATP:A 94.0 0.024 8.1E-07 54.7 2.7 25 117-141 6-30 (222)
162 2p5t_B PEZT; postsegregational 94.0 0.022 7.7E-07 56.3 2.6 24 118-141 34-57 (253)
163 1cke_A CK, MSSA, protein (cyti 93.9 0.026 8.9E-07 54.2 3.0 24 118-141 7-30 (227)
164 3be4_A Adenylate kinase; malar 93.9 0.029 9.8E-07 54.0 3.2 25 117-141 6-30 (217)
165 3e2i_A Thymidine kinase; Zn-bi 93.9 0.15 5.2E-06 49.5 8.2 28 225-252 102-129 (219)
166 3vkw_A Replicase large subunit 93.8 0.03 1E-06 60.3 3.4 25 225-249 235-259 (446)
167 2bdt_A BH3686; alpha-beta prot 93.8 0.031 1.1E-06 52.2 3.2 23 118-140 4-26 (189)
168 1ak2_A Adenylate kinase isoenz 93.7 0.031 1.1E-06 54.4 3.1 25 117-141 17-41 (233)
169 2pbr_A DTMP kinase, thymidylat 93.7 0.03 1E-06 52.1 2.9 22 119-140 3-24 (195)
170 2wwf_A Thymidilate kinase, put 93.7 0.027 9.2E-07 53.4 2.6 25 117-141 11-35 (212)
171 3a00_A Guanylate kinase, GMP k 93.7 0.034 1.2E-06 52.2 3.2 24 118-141 3-26 (186)
172 2yvu_A Probable adenylyl-sulfa 93.7 0.032 1.1E-06 52.1 3.0 25 117-141 14-38 (186)
173 2z0h_A DTMP kinase, thymidylat 93.7 0.031 1.1E-06 52.2 2.9 22 119-140 3-24 (197)
174 1z6t_A APAF-1, apoptotic prote 93.7 0.063 2.1E-06 59.5 5.9 48 91-138 120-169 (591)
175 3c8u_A Fructokinase; YP_612366 93.7 0.028 9.7E-07 53.7 2.6 25 117-141 23-47 (208)
176 2v54_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 52.2 3.3 25 117-141 5-29 (204)
177 2bbw_A Adenylate kinase 4, AK4 93.6 0.035 1.2E-06 54.5 3.1 25 117-141 28-52 (246)
178 3tlx_A Adenylate kinase 2; str 93.5 0.036 1.2E-06 54.6 3.1 25 117-141 30-54 (243)
179 2xb4_A Adenylate kinase; ATP-b 93.5 0.036 1.2E-06 53.7 3.1 24 118-141 2-25 (223)
180 2qt1_A Nicotinamide riboside k 93.5 0.04 1.4E-06 52.4 3.3 28 118-145 23-50 (207)
181 3sr0_A Adenylate kinase; phosp 93.5 0.036 1.2E-06 53.4 3.1 23 119-141 3-25 (206)
182 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.035 1.2E-06 55.2 3.0 23 118-140 6-28 (260)
183 1e4v_A Adenylate kinase; trans 93.5 0.033 1.1E-06 53.4 2.7 24 118-141 2-25 (214)
184 1nn5_A Similar to deoxythymidy 93.4 0.032 1.1E-06 53.0 2.6 25 117-141 10-34 (215)
185 2iut_A DNA translocase FTSK; n 93.3 0.4 1.4E-05 53.1 11.5 59 227-297 346-409 (574)
186 1lvg_A Guanylate kinase, GMP k 93.3 0.043 1.5E-06 52.2 3.3 26 116-141 4-29 (198)
187 3umf_A Adenylate kinase; rossm 93.3 0.04 1.4E-06 53.6 3.1 24 118-141 31-54 (217)
188 1znw_A Guanylate kinase, GMP k 93.3 0.047 1.6E-06 52.1 3.5 25 117-141 21-45 (207)
189 2if2_A Dephospho-COA kinase; a 93.2 0.041 1.4E-06 52.0 2.9 22 118-140 3-24 (204)
190 2pez_A Bifunctional 3'-phospho 93.2 0.043 1.5E-06 50.8 3.0 24 117-140 6-29 (179)
191 2qmh_A HPR kinase/phosphorylas 93.2 0.033 1.1E-06 53.5 2.2 30 112-141 30-59 (205)
192 1w4r_A Thymidine kinase; type 93.2 0.17 6E-06 48.2 7.2 23 118-140 22-45 (195)
193 3zqk_A VON willebrand factor; 93.1 0.046 1.6E-06 51.8 3.2 40 561-601 21-64 (199)
194 3ake_A Cytidylate kinase; CMP 93.1 0.046 1.6E-06 51.5 3.1 24 118-141 4-27 (208)
195 1s96_A Guanylate kinase, GMP k 92.9 0.066 2.3E-06 52.0 4.0 27 116-142 16-42 (219)
196 1svm_A Large T antigen; AAA+ f 92.9 0.057 2E-06 57.0 3.7 26 115-140 168-193 (377)
197 1z6g_A Guanylate kinase; struc 92.9 0.067 2.3E-06 51.6 4.0 26 116-141 23-48 (218)
198 3asz_A Uridine kinase; cytidin 92.9 0.041 1.4E-06 52.3 2.4 24 118-141 8-31 (211)
199 1m7g_A Adenylylsulfate kinase; 92.8 0.049 1.7E-06 52.0 2.9 25 117-141 26-50 (211)
200 2ga8_A Hypothetical 39.9 kDa p 92.8 0.083 2.8E-06 55.2 4.8 25 117-141 25-49 (359)
201 1uj2_A Uridine-cytidine kinase 92.8 0.059 2E-06 53.1 3.5 24 118-141 24-47 (252)
202 3ney_A 55 kDa erythrocyte memb 92.8 0.072 2.4E-06 51.1 4.0 26 116-141 19-44 (197)
203 1ltq_A Polynucleotide kinase; 92.8 0.067 2.3E-06 53.9 4.0 24 118-141 4-27 (301)
204 1htw_A HI0065; nucleotide-bind 92.8 0.062 2.1E-06 49.5 3.4 25 117-141 34-58 (158)
205 1jjv_A Dephospho-COA kinase; P 92.8 0.05 1.7E-06 51.6 2.8 21 118-138 4-24 (206)
206 3crm_A TRNA delta(2)-isopenten 92.7 0.063 2.1E-06 55.4 3.6 25 117-141 6-30 (323)
207 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.059 2E-06 51.4 3.2 24 117-140 24-47 (235)
208 4a74_A DNA repair and recombin 92.6 0.057 2E-06 51.6 3.0 23 118-140 27-49 (231)
209 3r20_A Cytidylate kinase; stru 92.5 0.062 2.1E-06 52.9 3.1 25 117-141 10-34 (233)
210 4e22_A Cytidylate kinase; P-lo 92.5 0.071 2.4E-06 52.7 3.6 25 117-141 28-52 (252)
211 4hqf_A Thrombospondin-related 92.3 0.062 2.1E-06 53.9 3.0 42 559-601 19-65 (281)
212 2krk_A 26S protease regulatory 92.3 0.22 7.4E-06 41.0 5.7 46 360-405 39-84 (86)
213 4gp7_A Metallophosphoesterase; 92.3 0.071 2.4E-06 49.3 3.1 18 118-135 11-28 (171)
214 1uf9_A TT1252 protein; P-loop, 92.2 0.065 2.2E-06 50.2 2.8 23 117-139 9-31 (203)
215 3nwj_A ATSK2; P loop, shikimat 92.2 0.078 2.7E-06 52.7 3.4 26 116-141 48-73 (250)
216 1gtv_A TMK, thymidylate kinase 92.1 0.034 1.2E-06 52.8 0.7 23 119-141 3-25 (214)
217 1p9r_A General secretion pathw 92.1 0.14 4.8E-06 54.8 5.5 27 116-142 167-193 (418)
218 3tqf_A HPR(Ser) kinase; transf 92.0 0.058 2E-06 50.7 2.1 28 112-139 12-39 (181)
219 2cvh_A DNA repair and recombin 91.9 0.095 3.2E-06 49.7 3.6 22 117-138 21-42 (220)
220 2ehv_A Hypothetical protein PH 91.7 0.091 3.1E-06 50.9 3.3 22 117-138 31-52 (251)
221 4fx5_A VON willebrand factor t 91.7 0.1 3.6E-06 56.5 4.1 40 561-601 77-119 (464)
222 3a8t_A Adenylate isopentenyltr 91.7 0.082 2.8E-06 54.9 3.1 24 118-141 42-65 (339)
223 2v9p_A Replication protein E1; 91.7 0.09 3.1E-06 53.8 3.4 26 115-140 125-150 (305)
224 2eyu_A Twitching motility prot 91.6 0.084 2.9E-06 52.7 3.0 26 116-141 25-50 (261)
225 1n0w_A DNA repair protein RAD5 91.6 0.1 3.4E-06 50.4 3.5 23 117-139 25-47 (243)
226 1rz3_A Hypothetical protein rb 91.6 0.078 2.7E-06 50.3 2.6 24 118-141 24-47 (201)
227 2i3b_A HCR-ntpase, human cance 91.6 0.089 3.1E-06 49.9 3.0 24 118-141 3-26 (189)
228 2onk_A Molybdate/tungstate ABC 91.5 0.093 3.2E-06 51.7 3.1 27 117-143 25-51 (240)
229 3tif_A Uncharacterized ABC tra 91.5 0.078 2.7E-06 52.0 2.6 27 117-143 32-58 (235)
230 3lnc_A Guanylate kinase, GMP k 91.5 0.064 2.2E-06 51.9 1.9 26 117-142 28-54 (231)
231 3kta_A Chromosome segregation 91.5 0.11 3.8E-06 48.0 3.5 26 116-141 26-51 (182)
232 4eaq_A DTMP kinase, thymidylat 91.4 0.095 3.2E-06 51.1 3.1 24 118-141 28-51 (229)
233 2b2x_A Integrin alpha-1; compu 91.4 0.1 3.5E-06 50.3 3.2 39 561-602 22-64 (223)
234 2pcj_A ABC transporter, lipopr 91.3 0.075 2.6E-06 51.7 2.2 26 117-142 31-56 (224)
235 2jeo_A Uridine-cytidine kinase 91.3 0.094 3.2E-06 51.4 2.9 24 118-141 27-50 (245)
236 2oap_1 GSPE-2, type II secreti 91.3 0.15 5.2E-06 56.0 4.8 27 116-142 260-286 (511)
237 3d3q_A TRNA delta(2)-isopenten 91.2 0.11 3.9E-06 53.9 3.5 24 118-141 9-32 (340)
238 1vht_A Dephospho-COA kinase; s 91.1 0.11 3.8E-06 49.6 3.2 21 118-138 6-26 (218)
239 4b3f_X DNA-binding protein smu 91.1 0.16 5.5E-06 57.2 5.0 38 101-140 192-230 (646)
240 3foz_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 53.0 3.6 24 118-141 12-35 (316)
241 3aez_A Pantothenate kinase; tr 91.0 0.1 3.5E-06 53.6 3.0 24 118-141 92-115 (312)
242 1sgw_A Putative ABC transporte 91.0 0.098 3.4E-06 50.7 2.6 27 117-143 36-62 (214)
243 3exa_A TRNA delta(2)-isopenten 90.9 0.12 4.2E-06 53.1 3.4 24 118-141 5-28 (322)
244 1b0u_A Histidine permease; ABC 90.9 0.099 3.4E-06 52.2 2.6 27 117-143 33-59 (262)
245 3kw6_A 26S protease regulatory 90.9 0.44 1.5E-05 38.0 6.1 45 360-404 31-75 (78)
246 1g6h_A High-affinity branched- 90.8 0.1 3.5E-06 51.9 2.6 27 117-143 34-60 (257)
247 2grj_A Dephospho-COA kinase; T 90.8 0.13 4.5E-06 48.8 3.3 22 119-140 15-36 (192)
248 3gfo_A Cobalt import ATP-bindi 90.7 0.1 3.6E-06 52.5 2.6 27 117-143 35-61 (275)
249 2h92_A Cytidylate kinase; ross 90.7 0.15 5E-06 48.7 3.6 24 118-141 5-28 (219)
250 1mv5_A LMRA, multidrug resista 90.6 0.11 3.7E-06 51.2 2.6 26 117-142 29-54 (243)
251 1odf_A YGR205W, hypothetical 3 90.6 0.12 4.2E-06 52.4 3.0 23 119-141 34-56 (290)
252 2ff7_A Alpha-hemolysin translo 90.6 0.11 3.7E-06 51.4 2.6 27 117-143 36-62 (247)
253 1ji0_A ABC transporter; ATP bi 90.6 0.11 3.7E-06 51.1 2.6 27 117-143 33-59 (240)
254 2ww8_A RRGA, cell WALL surface 90.5 0.12 4E-06 60.6 3.1 44 558-602 221-273 (893)
255 2olj_A Amino acid ABC transpor 90.5 0.11 3.9E-06 51.9 2.6 27 117-143 51-77 (263)
256 3zvl_A Bifunctional polynucleo 90.4 0.11 3.8E-06 55.4 2.7 24 118-141 260-283 (416)
257 1lw7_A Transcriptional regulat 90.3 0.16 5.6E-06 52.9 3.8 25 117-141 171-195 (365)
258 3hrz_D Complement factor B; se 90.3 0.085 2.9E-06 60.2 1.7 43 559-602 241-287 (741)
259 2qi9_C Vitamin B12 import ATP- 90.3 0.12 4.1E-06 51.2 2.6 26 117-142 27-52 (249)
260 2gza_A Type IV secretion syste 90.3 0.13 4.3E-06 53.9 2.9 27 116-142 175-201 (361)
261 2ihy_A ABC transporter, ATP-bi 90.3 0.12 4.1E-06 52.1 2.6 27 117-143 48-74 (279)
262 1cr0_A DNA primase/helicase; R 90.2 0.12 4E-06 52.1 2.6 25 117-141 36-60 (296)
263 1nlf_A Regulatory protein REPA 90.2 0.13 4.4E-06 51.4 2.8 25 116-140 30-54 (279)
264 2zpa_A Uncharacterized protein 90.2 0.36 1.2E-05 54.5 6.7 25 117-141 193-217 (671)
265 2pze_A Cystic fibrosis transme 90.2 0.14 4.6E-06 50.1 2.9 28 116-143 34-61 (229)
266 4g1u_C Hemin import ATP-bindin 90.2 0.12 4E-06 51.8 2.5 26 117-142 38-63 (266)
267 1vpl_A ABC transporter, ATP-bi 90.2 0.12 4.2E-06 51.4 2.6 27 117-143 42-68 (256)
268 3tqc_A Pantothenate kinase; bi 90.1 0.14 4.8E-06 52.8 3.0 23 119-141 95-117 (321)
269 1q3t_A Cytidylate kinase; nucl 90.1 0.15 5.1E-06 49.6 3.1 25 117-141 17-41 (236)
270 3b85_A Phosphate starvation-in 90.0 0.13 4.4E-06 49.6 2.5 24 116-139 22-45 (208)
271 2yz2_A Putative ABC transporte 90.0 0.13 4.4E-06 51.4 2.6 27 117-143 34-60 (266)
272 2nq2_C Hypothetical ABC transp 90.0 0.13 4.4E-06 51.1 2.6 26 117-142 32-57 (253)
273 3fdi_A Uncharacterized protein 90.0 0.21 7.1E-06 47.7 3.9 24 118-141 8-31 (201)
274 2pt7_A CAG-ALFA; ATPase, prote 89.9 0.13 4.4E-06 53.2 2.6 27 116-142 171-197 (330)
275 2ixe_A Antigen peptide transpo 89.9 0.15 5.1E-06 51.1 3.0 27 117-143 46-72 (271)
276 2dr3_A UPF0273 protein PH0284; 89.9 0.16 5.4E-06 49.0 3.1 23 117-139 24-46 (247)
277 2cbz_A Multidrug resistance-as 89.9 0.12 4.2E-06 50.6 2.3 26 117-142 32-57 (237)
278 3fvq_A Fe(3+) IONS import ATP- 89.8 0.14 4.7E-06 53.7 2.7 26 117-142 31-56 (359)
279 1sq5_A Pantothenate kinase; P- 89.8 0.14 4.8E-06 52.2 2.7 24 118-141 82-105 (308)
280 2f6r_A COA synthase, bifunctio 89.8 0.15 5.2E-06 51.2 2.9 21 118-138 77-97 (281)
281 1z47_A CYSA, putative ABC-tran 89.6 0.16 5.6E-06 53.0 3.1 26 117-142 42-67 (355)
282 1rj9_A FTSY, signal recognitio 89.6 0.16 5.4E-06 51.9 2.9 24 118-141 104-127 (304)
283 3rlf_A Maltose/maltodextrin im 89.5 0.17 5.8E-06 53.4 3.1 26 117-142 30-55 (381)
284 2f1r_A Molybdopterin-guanine d 89.5 0.11 3.8E-06 48.4 1.5 25 117-141 3-27 (171)
285 2ghi_A Transport protein; mult 89.4 0.17 5.7E-06 50.4 2.9 27 116-142 46-72 (260)
286 2a5y_B CED-4; apoptosis; HET: 89.3 0.3 1E-05 53.9 5.1 41 98-138 131-174 (549)
287 3d31_A Sulfate/molybdate ABC t 89.3 0.16 5.6E-06 52.9 2.8 26 117-142 27-52 (348)
288 2it1_A 362AA long hypothetical 89.3 0.18 6.2E-06 52.8 3.1 26 117-142 30-55 (362)
289 2yyz_A Sugar ABC transporter, 89.3 0.18 6.1E-06 52.8 3.1 26 117-142 30-55 (359)
290 1v43_A Sugar-binding transport 89.2 0.19 6.4E-06 53.0 3.1 27 117-143 38-64 (372)
291 3b9q_A Chloroplast SRP recepto 89.1 0.18 6.2E-06 51.4 3.0 23 119-141 103-125 (302)
292 2f9l_A RAB11B, member RAS onco 89.1 0.21 7.1E-06 46.7 3.2 23 118-140 7-29 (199)
293 1xjc_A MOBB protein homolog; s 89.1 0.2 6.9E-06 46.7 3.0 25 117-141 5-29 (169)
294 2dyk_A GTP-binding protein; GT 89.0 0.22 7.7E-06 44.1 3.2 22 118-139 3-24 (161)
295 1g29_1 MALK, maltose transport 89.0 0.19 6.6E-06 52.8 3.1 26 117-142 30-55 (372)
296 1oix_A RAS-related protein RAB 88.9 0.2 6.8E-06 46.7 2.8 23 118-140 31-53 (191)
297 2gk6_A Regulator of nonsense t 88.9 0.37 1.3E-05 54.1 5.5 25 116-140 195-219 (624)
298 3h1t_A Type I site-specific re 88.7 0.88 3E-05 50.3 8.4 26 115-140 197-222 (590)
299 1np6_A Molybdopterin-guanine d 88.6 0.23 7.7E-06 46.5 3.0 25 117-141 7-31 (174)
300 1z2a_A RAS-related protein RAB 88.5 0.25 8.6E-06 44.0 3.2 22 118-139 7-28 (168)
301 3sop_A Neuronal-specific septi 88.4 0.21 7.3E-06 50.0 2.9 24 118-141 4-27 (270)
302 2ocp_A DGK, deoxyguanosine kin 88.3 0.24 8.1E-06 48.2 3.1 24 118-141 4-27 (241)
303 1kao_A RAP2A; GTP-binding prot 88.3 0.27 9.1E-06 43.6 3.2 22 118-139 5-26 (167)
304 1oxx_K GLCV, glucose, ABC tran 88.3 0.17 5.7E-06 52.9 2.1 26 117-142 32-57 (353)
305 3e70_C DPA, signal recognition 88.3 0.22 7.6E-06 51.4 3.0 24 118-141 131-154 (328)
306 3sfz_A APAF-1, apoptotic pepti 88.3 0.33 1.1E-05 58.0 5.0 50 90-139 119-170 (1249)
307 1taf_A TFIID TBP associated fa 88.3 1.4 4.6E-05 34.7 6.8 49 347-402 18-66 (68)
308 2zu0_C Probable ATP-dependent 88.3 0.21 7.1E-06 49.9 2.7 24 117-140 47-70 (267)
309 3hr8_A Protein RECA; alpha and 88.2 0.19 6.6E-06 52.5 2.4 23 118-140 63-85 (356)
310 2d2e_A SUFC protein; ABC-ATPas 88.2 0.21 7.3E-06 49.3 2.6 23 117-139 30-52 (250)
311 1p5z_B DCK, deoxycytidine kina 88.1 0.14 4.8E-06 50.6 1.3 24 118-141 26-49 (263)
312 1vma_A Cell division protein F 88.0 0.24 8.3E-06 50.6 3.0 23 119-141 107-129 (306)
313 3cmu_A Protein RECA, recombina 88.0 0.54 1.9E-05 59.2 6.6 24 117-140 1082-1105(2050)
314 2fwr_A DNA repair protein RAD2 88.0 0.49 1.7E-05 50.6 5.6 25 117-141 109-133 (472)
315 1u8z_A RAS-related protein RAL 88.0 0.29 9.7E-06 43.5 3.2 23 117-139 5-27 (168)
316 3eph_A TRNA isopentenyltransfe 88.0 0.22 7.5E-06 52.9 2.7 24 118-141 4-27 (409)
317 2nzj_A GTP-binding protein REM 88.0 0.27 9.3E-06 44.2 3.1 21 118-138 6-26 (175)
318 2pjz_A Hypothetical protein ST 87.9 0.2 6.9E-06 50.0 2.3 24 117-140 31-54 (263)
319 2ce2_X GTPase HRAS; signaling 87.9 0.25 8.7E-06 43.6 2.8 22 118-139 5-26 (166)
320 1ek0_A Protein (GTP-binding pr 87.9 0.29 9.9E-06 43.6 3.2 22 118-139 5-26 (170)
321 2axn_A 6-phosphofructo-2-kinas 87.9 0.23 8E-06 54.5 3.0 23 118-140 37-59 (520)
322 1z0j_A RAB-22, RAS-related pro 87.8 0.3 1E-05 43.6 3.2 22 118-139 8-29 (170)
323 2zej_A Dardarin, leucine-rich 87.8 0.27 9.1E-06 45.3 2.9 22 118-139 4-25 (184)
324 3nh6_A ATP-binding cassette SU 87.8 0.23 7.9E-06 50.8 2.7 28 116-143 80-107 (306)
325 2wji_A Ferrous iron transport 87.7 0.28 9.6E-06 44.3 3.0 22 118-139 5-26 (165)
326 1pzn_A RAD51, DNA repair and r 87.7 0.25 8.4E-06 51.4 2.9 23 118-140 133-155 (349)
327 2zts_A Putative uncharacterize 87.7 0.29 1E-05 47.1 3.3 21 118-138 32-52 (251)
328 2v6i_A RNA helicase; membrane, 87.7 0.75 2.6E-05 49.0 6.7 18 116-133 2-19 (431)
329 2og2_A Putative signal recogni 87.7 0.25 8.7E-06 51.6 3.0 23 119-141 160-182 (359)
330 4edh_A DTMP kinase, thymidylat 87.6 0.27 9.2E-06 47.4 2.9 24 118-141 8-31 (213)
331 1wms_A RAB-9, RAB9, RAS-relate 87.6 0.31 1.1E-05 44.0 3.2 23 117-139 8-30 (177)
332 1a7j_A Phosphoribulokinase; tr 87.6 0.15 5E-06 51.8 1.0 24 118-141 7-30 (290)
333 2ged_A SR-beta, signal recogni 87.6 0.31 1E-05 45.0 3.2 25 116-140 48-72 (193)
334 1nrj_B SR-beta, signal recogni 87.6 0.29 1E-05 46.2 3.2 25 116-140 12-36 (218)
335 1z08_A RAS-related protein RAB 87.5 0.32 1.1E-05 43.5 3.2 22 118-139 8-29 (170)
336 3t1o_A Gliding protein MGLA; G 87.5 0.33 1.1E-05 44.5 3.4 24 118-141 16-39 (198)
337 3cr8_A Sulfate adenylyltranfer 87.5 0.21 7E-06 55.4 2.2 25 117-141 370-394 (552)
338 3tui_C Methionine import ATP-b 87.4 0.29 9.8E-06 51.4 3.1 26 117-142 55-80 (366)
339 1r2q_A RAS-related protein RAB 87.4 0.33 1.1E-05 43.3 3.2 22 118-139 8-29 (170)
340 2zr9_A Protein RECA, recombina 87.4 0.26 9E-06 51.3 2.8 24 117-140 62-85 (349)
341 1ky3_A GTP-binding protein YPT 87.3 0.33 1.1E-05 43.9 3.2 23 117-139 9-31 (182)
342 2erx_A GTP-binding protein DI- 87.3 0.3 1E-05 43.6 2.9 21 118-138 5-25 (172)
343 1c1y_A RAS-related protein RAP 87.3 0.33 1.1E-05 43.2 3.2 22 118-139 5-26 (167)
344 2px0_A Flagellar biosynthesis 87.3 0.25 8.5E-06 50.2 2.6 25 117-141 106-130 (296)
345 2bbs_A Cystic fibrosis transme 87.2 0.25 8.5E-06 50.1 2.5 26 117-142 65-90 (290)
346 1g16_A RAS-related protein SEC 87.1 0.3 1E-05 43.6 2.8 22 118-139 5-26 (170)
347 3q85_A GTP-binding protein REM 87.1 0.31 1.1E-05 43.6 2.8 21 118-138 4-24 (169)
348 2yhs_A FTSY, cell division pro 87.0 0.29 9.8E-06 53.4 3.0 23 119-141 296-318 (503)
349 3bc1_A RAS-related protein RAB 87.0 0.34 1.2E-05 44.2 3.2 23 117-139 12-34 (195)
350 3dm5_A SRP54, signal recogniti 86.9 0.21 7.3E-06 53.7 1.9 42 118-160 102-143 (443)
351 1tq4_A IIGP1, interferon-induc 86.9 0.44 1.5E-05 50.8 4.4 26 116-141 69-94 (413)
352 3q72_A GTP-binding protein RAD 86.9 0.28 9.6E-06 43.8 2.5 20 118-137 4-23 (166)
353 1z0f_A RAB14, member RAS oncog 86.8 0.36 1.2E-05 43.5 3.2 23 117-139 16-38 (179)
354 3v9p_A DTMP kinase, thymidylat 86.8 0.26 8.8E-06 48.2 2.3 24 118-141 27-50 (227)
355 2hxs_A RAB-26, RAS-related pro 86.8 0.35 1.2E-05 43.7 3.1 22 118-139 8-29 (178)
356 1r8s_A ADP-ribosylation factor 86.7 0.37 1.3E-05 42.9 3.2 22 118-139 2-23 (164)
357 2wjg_A FEOB, ferrous iron tran 86.7 0.33 1.1E-05 44.5 2.8 22 118-139 9-30 (188)
358 3tw8_B RAS-related protein RAB 86.6 0.34 1.1E-05 43.8 2.9 22 117-138 10-31 (181)
359 2z43_A DNA repair and recombin 86.6 0.35 1.2E-05 49.5 3.3 24 117-140 108-131 (324)
360 4dsu_A GTPase KRAS, isoform 2B 86.6 0.38 1.3E-05 43.8 3.2 22 118-139 6-27 (189)
361 3clv_A RAB5 protein, putative; 86.5 0.38 1.3E-05 44.1 3.2 23 117-139 8-30 (208)
362 2lkc_A Translation initiation 86.5 0.36 1.2E-05 43.6 3.0 25 115-139 7-31 (178)
363 1knx_A Probable HPR(Ser) kinas 86.5 0.23 7.9E-06 50.9 1.8 25 114-138 145-169 (312)
364 2wjy_A Regulator of nonsense t 86.4 0.52 1.8E-05 54.5 4.9 24 117-140 372-395 (800)
365 3b0c_W CENP-W, centromere prot 86.4 1 3.6E-05 36.0 5.3 58 341-405 16-73 (76)
366 2oil_A CATX-8, RAS-related pro 86.4 0.38 1.3E-05 44.3 3.2 22 118-139 27-48 (193)
367 2fn4_A P23, RAS-related protei 86.4 0.35 1.2E-05 43.6 2.8 23 117-139 10-32 (181)
368 3con_A GTPase NRAS; structural 86.3 0.39 1.3E-05 44.1 3.2 22 118-139 23-44 (190)
369 1upt_A ARL1, ADP-ribosylation 86.3 0.4 1.4E-05 42.9 3.2 22 117-138 8-29 (171)
370 1bif_A 6-phosphofructo-2-kinas 86.3 0.33 1.1E-05 52.5 3.0 24 117-140 40-63 (469)
371 2y8e_A RAB-protein 6, GH09086P 86.3 0.35 1.2E-05 43.5 2.8 22 118-139 16-37 (179)
372 1c9k_A COBU, adenosylcobinamid 86.3 0.34 1.2E-05 45.6 2.7 21 119-139 2-22 (180)
373 3gd7_A Fusion complex of cysti 86.2 0.29 9.8E-06 51.9 2.4 26 116-141 47-72 (390)
374 2a9k_A RAS-related protein RAL 86.2 0.4 1.4E-05 43.5 3.2 23 117-139 19-41 (187)
375 1u94_A RECA protein, recombina 86.2 0.37 1.3E-05 50.3 3.2 24 117-140 64-87 (356)
376 2npi_A Protein CLP1; CLP1-PCF1 86.2 0.33 1.1E-05 52.6 2.9 26 116-141 138-163 (460)
377 2efe_B Small GTP-binding prote 86.2 0.41 1.4E-05 43.3 3.2 22 118-139 14-35 (181)
378 3v9r_A MHF1, uncharacterized p 86.0 5.7 0.00019 32.9 9.6 49 345-400 30-78 (90)
379 1f2t_A RAD50 ABC-ATPase; DNA d 86.0 0.4 1.4E-05 43.3 3.0 24 117-140 24-47 (149)
380 1v5w_A DMC1, meiotic recombina 86.0 0.4 1.4E-05 49.6 3.4 21 119-139 125-145 (343)
381 2gj8_A MNME, tRNA modification 85.9 0.34 1.2E-05 44.3 2.5 23 117-139 5-27 (172)
382 2wsm_A Hydrogenase expression/ 85.8 0.51 1.7E-05 44.7 3.8 25 116-140 30-54 (221)
383 1m7b_A RND3/RHOE small GTP-bin 85.7 0.39 1.3E-05 44.1 2.8 22 118-139 9-30 (184)
384 1g8f_A Sulfate adenylyltransfe 85.7 0.32 1.1E-05 53.3 2.5 25 117-141 396-420 (511)
385 3lv8_A DTMP kinase, thymidylat 85.7 0.35 1.2E-05 47.5 2.5 25 117-141 28-52 (236)
386 3kkq_A RAS-related protein M-R 85.6 0.45 1.5E-05 43.3 3.2 22 118-139 20-41 (183)
387 2g6b_A RAS-related protein RAB 85.6 0.45 1.5E-05 43.0 3.2 22 118-139 12-33 (180)
388 3thx_A DNA mismatch repair pro 85.5 0.83 2.8E-05 53.7 6.0 20 119-138 665-684 (934)
389 3lda_A DNA repair protein RAD5 85.4 0.36 1.2E-05 51.3 2.6 20 119-138 181-200 (400)
390 1mh1_A RAC1; GTP-binding, GTPa 85.3 0.47 1.6E-05 43.1 3.2 22 118-139 7-28 (186)
391 2gf9_A RAS-related protein RAB 85.3 0.47 1.6E-05 43.7 3.2 22 118-139 24-45 (189)
392 1x6v_B Bifunctional 3'-phospho 85.3 0.38 1.3E-05 54.0 2.9 23 118-140 54-76 (630)
393 2bme_A RAB4A, RAS-related prot 85.3 0.42 1.4E-05 43.6 2.8 23 117-139 11-33 (186)
394 3tmk_A Thymidylate kinase; pho 85.2 0.4 1.4E-05 46.4 2.7 25 117-141 6-30 (216)
395 4dra_A Centromere protein S; D 85.1 2.1 7.2E-05 36.9 6.8 50 344-400 44-93 (113)
396 2bov_A RAla, RAS-related prote 85.1 0.48 1.6E-05 44.0 3.2 22 118-139 16-37 (206)
397 2qm8_A GTPase/ATPase; G protei 85.1 0.42 1.4E-05 49.4 3.0 25 117-141 56-80 (337)
398 1yrb_A ATP(GTP)binding protein 85.1 0.4 1.4E-05 46.8 2.7 24 118-141 16-39 (262)
399 2i1q_A DNA repair and recombin 85.1 0.37 1.3E-05 49.1 2.5 22 118-139 100-121 (322)
400 3ld9_A DTMP kinase, thymidylat 85.0 0.44 1.5E-05 46.4 2.9 24 118-141 23-46 (223)
401 3bwd_D RAC-like GTP-binding pr 85.0 0.5 1.7E-05 42.8 3.2 24 116-139 8-31 (182)
402 1vg8_A RAS-related protein RAB 85.0 0.49 1.7E-05 44.0 3.2 23 117-139 9-31 (207)
403 1svi_A GTP-binding protein YSX 85.0 0.37 1.3E-05 44.4 2.3 24 116-139 23-46 (195)
404 3tkl_A RAS-related protein RAB 85.0 0.49 1.7E-05 43.5 3.2 22 118-139 18-39 (196)
405 3hdt_A Putative kinase; struct 85.0 0.46 1.6E-05 46.2 3.0 24 118-141 16-39 (223)
406 3c5c_A RAS-like protein 12; GD 85.0 0.5 1.7E-05 43.6 3.2 22 118-139 23-44 (187)
407 1z06_A RAS-related protein RAB 84.9 0.52 1.8E-05 43.4 3.2 22 118-139 22-43 (189)
408 3ihw_A Centg3; RAS, centaurin, 84.8 0.51 1.8E-05 43.6 3.2 22 118-139 22-43 (184)
409 2cxx_A Probable GTP-binding pr 84.8 0.4 1.4E-05 43.8 2.4 22 118-139 3-24 (190)
410 2atv_A RERG, RAS-like estrogen 84.8 0.52 1.8E-05 43.7 3.2 23 117-139 29-51 (196)
411 1x3s_A RAS-related protein RAB 84.7 0.52 1.8E-05 43.2 3.2 22 118-139 17-38 (195)
412 2xzl_A ATP-dependent helicase 84.7 0.84 2.9E-05 52.8 5.5 22 117-138 376-397 (802)
413 1m8p_A Sulfate adenylyltransfe 84.7 0.42 1.5E-05 53.1 2.9 23 119-141 399-421 (573)
414 2a5j_A RAS-related protein RAB 84.6 0.53 1.8E-05 43.4 3.2 22 118-139 23-44 (191)
415 3bh0_A DNAB-like replicative h 84.6 0.47 1.6E-05 48.4 3.1 22 118-139 70-91 (315)
416 3dz8_A RAS-related protein RAB 84.6 0.47 1.6E-05 43.8 2.8 23 118-140 25-47 (191)
417 4tmk_A Protein (thymidylate ki 84.5 0.43 1.5E-05 46.0 2.6 24 118-141 5-28 (213)
418 1zd9_A ADP-ribosylation factor 84.5 0.53 1.8E-05 43.3 3.2 22 118-139 24-45 (188)
419 3gmt_A Adenylate kinase; ssgci 84.5 0.42 1.4E-05 46.8 2.5 23 119-141 11-33 (230)
420 2iwr_A Centaurin gamma 1; ANK 84.4 0.43 1.5E-05 43.2 2.4 23 117-139 8-30 (178)
421 2p5s_A RAS and EF-hand domain 84.4 0.54 1.8E-05 43.7 3.2 23 117-139 29-51 (199)
422 3pqc_A Probable GTP-binding pr 84.4 0.4 1.4E-05 43.9 2.3 23 117-139 24-46 (195)
423 1zbd_A Rabphilin-3A; G protein 84.4 0.48 1.7E-05 44.0 2.8 22 118-139 10-31 (203)
424 1pui_A ENGB, probable GTP-bind 84.4 0.26 9E-06 46.2 1.0 23 117-139 27-49 (210)
425 3reg_A RHO-like small GTPase; 84.4 0.54 1.9E-05 43.4 3.2 22 118-139 25-46 (194)
426 2obl_A ESCN; ATPase, hydrolase 84.3 0.54 1.8E-05 48.9 3.4 27 116-142 71-97 (347)
427 1ko7_A HPR kinase/phosphatase; 84.3 0.38 1.3E-05 49.4 2.1 25 115-139 143-167 (314)
428 2fg5_A RAB-22B, RAS-related pr 84.3 0.5 1.7E-05 43.7 2.8 23 117-139 24-46 (192)
429 3t5g_A GTP-binding protein RHE 84.2 0.51 1.7E-05 42.9 2.8 22 117-138 7-28 (181)
430 1m2o_B GTP-binding protein SAR 84.1 0.5 1.7E-05 43.8 2.8 24 116-139 23-46 (190)
431 3vh5_A CENP-S; histone fold, c 84.0 5.2 0.00018 35.7 9.0 50 344-400 36-85 (140)
432 3kl4_A SRP54, signal recogniti 83.9 0.44 1.5E-05 51.1 2.5 24 118-141 99-122 (433)
433 3oes_A GTPase rhebl1; small GT 83.9 0.52 1.8E-05 44.0 2.8 23 117-139 25-47 (201)
434 3cph_A RAS-related protein SEC 83.9 0.58 2E-05 43.7 3.2 23 117-139 21-43 (213)
435 2bcg_Y Protein YP2, GTP-bindin 83.9 0.52 1.8E-05 44.0 2.8 23 117-139 9-31 (206)
436 1ksh_A ARF-like protein 2; sma 83.8 0.54 1.8E-05 43.0 2.8 23 116-138 18-40 (186)
437 2gf0_A GTP-binding protein DI- 83.8 0.54 1.8E-05 43.3 2.8 23 117-139 9-31 (199)
438 1fzq_A ADP-ribosylation factor 83.6 0.49 1.7E-05 43.4 2.5 23 116-138 16-38 (181)
439 2vp4_A Deoxynucleoside kinase; 83.6 0.37 1.3E-05 46.6 1.6 22 118-139 22-43 (230)
440 1yvr_A RO autoantigen, 60-kDa 83.6 0.37 1.3E-05 53.1 1.8 80 516-601 318-412 (538)
441 1zu4_A FTSY; GTPase, signal re 83.5 0.54 1.8E-05 48.3 3.0 23 119-141 108-130 (320)
442 3ice_A Transcription terminati 83.5 0.95 3.2E-05 47.9 4.8 26 115-140 173-198 (422)
443 1u0l_A Probable GTPase ENGC; p 83.5 0.48 1.6E-05 48.0 2.5 24 118-141 171-194 (301)
444 3vlf_B 26S protease regulatory 83.5 2 6.8E-05 35.1 5.9 46 360-405 29-74 (88)
445 3lxx_A GTPase IMAP family memb 83.5 0.55 1.9E-05 45.4 2.9 23 117-139 30-52 (239)
446 2il1_A RAB12; G-protein, GDP, 83.4 0.57 1.9E-05 43.4 2.8 21 118-138 28-48 (192)
447 2hf9_A Probable hydrogenase ni 83.4 0.89 3.1E-05 43.1 4.3 25 116-140 38-62 (226)
448 1gwn_A RHO-related GTP-binding 83.3 0.56 1.9E-05 44.3 2.8 23 117-139 29-51 (205)
449 2dpy_A FLII, flagellum-specifi 83.2 0.68 2.3E-05 49.7 3.7 27 116-142 157-183 (438)
450 3euj_A Chromosome partition pr 83.2 0.6 2.1E-05 50.7 3.3 26 117-142 30-55 (483)
451 3cbq_A GTP-binding protein REM 83.2 0.49 1.7E-05 44.2 2.3 20 118-137 25-44 (195)
452 1moz_A ARL1, ADP-ribosylation 83.1 0.38 1.3E-05 43.7 1.5 22 116-137 18-39 (183)
453 2rcn_A Probable GTPase ENGC; Y 83.0 0.54 1.8E-05 49.1 2.7 25 117-141 216-240 (358)
454 1xp8_A RECA protein, recombina 83.0 0.56 1.9E-05 49.1 2.8 24 117-140 75-98 (366)
455 4ag6_A VIRB4 ATPase, type IV s 83.0 0.66 2.2E-05 48.6 3.4 26 115-140 34-59 (392)
456 2cjw_A GTP-binding protein GEM 83.0 0.67 2.3E-05 43.1 3.2 22 118-139 8-29 (192)
457 4bas_A ADP-ribosylation factor 82.9 0.61 2.1E-05 42.9 2.9 22 117-138 18-39 (199)
458 2fh5_B SR-beta, signal recogni 82.9 0.67 2.3E-05 43.5 3.2 23 117-139 8-30 (214)
459 2ew1_A RAS-related protein RAB 82.9 0.6 2E-05 44.0 2.8 23 117-139 27-49 (201)
460 3llm_A ATP-dependent RNA helic 82.9 1.1 3.6E-05 43.4 4.6 21 116-136 76-96 (235)
461 1yqt_A RNAse L inhibitor; ATP- 82.8 0.6 2.1E-05 51.5 3.1 26 117-142 48-73 (538)
462 2fu5_C RAS-related protein RAB 82.8 0.42 1.4E-05 43.5 1.6 21 118-138 10-30 (183)
463 3qks_A DNA double-strand break 82.8 0.65 2.2E-05 44.2 3.0 25 117-141 24-48 (203)
464 1tf7_A KAIC; homohexamer, hexa 82.7 0.57 2E-05 51.3 3.0 25 117-141 282-306 (525)
465 3io5_A Recombination and repai 82.7 0.58 2E-05 48.2 2.7 22 118-139 30-51 (333)
466 4gzl_A RAS-related C3 botulinu 82.6 0.6 2.1E-05 43.8 2.7 24 116-139 30-53 (204)
467 1tf7_A KAIC; homohexamer, hexa 82.6 0.57 1.9E-05 51.4 2.8 26 116-141 39-66 (525)
468 1zj6_A ADP-ribosylation factor 82.5 0.61 2.1E-05 42.8 2.6 24 115-138 15-38 (187)
469 2q3h_A RAS homolog gene family 82.5 0.68 2.3E-05 42.9 3.0 22 117-138 21-42 (201)
470 2f7s_A C25KG, RAS-related prot 82.4 0.7 2.4E-05 43.5 3.1 21 118-138 27-47 (217)
471 2r6a_A DNAB helicase, replicat 82.4 0.61 2.1E-05 50.1 3.0 23 118-140 205-227 (454)
472 3b0b_B CENP-S, centromere prot 82.3 5.4 0.00019 34.1 8.2 49 345-400 37-85 (107)
473 2fv8_A H6, RHO-related GTP-bin 82.3 0.66 2.3E-05 43.5 2.8 23 117-139 26-48 (207)
474 2qag_B Septin-6, protein NEDD5 82.3 0.51 1.7E-05 50.5 2.2 22 119-140 45-66 (427)
475 2h17_A ADP-ribosylation factor 82.2 0.52 1.8E-05 43.1 2.0 23 117-139 22-44 (181)
476 2atx_A Small GTP binding prote 82.2 0.68 2.3E-05 42.7 2.8 22 118-139 20-41 (194)
477 3k53_A Ferrous iron transport 82.2 0.58 2E-05 46.4 2.5 23 117-139 4-26 (271)
478 1qhl_A Protein (cell division 82.2 0.33 1.1E-05 47.4 0.7 23 120-142 31-53 (227)
479 2o52_A RAS-related protein RAB 82.1 0.6 2.1E-05 43.6 2.5 22 117-138 26-47 (200)
480 2yv5_A YJEQ protein; hydrolase 82.1 0.69 2.4E-05 46.9 3.1 23 118-141 167-189 (302)
481 2www_A Methylmalonic aciduria 82.1 0.66 2.3E-05 48.1 3.0 24 117-140 75-98 (349)
482 3p32_A Probable GTPase RV1496/ 82.0 0.67 2.3E-05 48.1 3.0 24 117-140 80-103 (355)
483 2b6h_A ADP-ribosylation factor 81.9 0.62 2.1E-05 43.3 2.5 21 117-137 30-50 (192)
484 1f6b_A SAR1; gtpases, N-termin 81.9 0.53 1.8E-05 44.0 2.0 23 116-138 25-47 (198)
485 2hup_A RAS-related protein RAB 81.8 0.71 2.4E-05 43.2 2.8 22 118-139 31-52 (201)
486 3b5x_A Lipid A export ATP-bind 81.7 0.76 2.6E-05 51.1 3.4 27 116-142 369-395 (582)
487 2h57_A ADP-ribosylation factor 81.6 0.56 1.9E-05 43.2 2.0 23 117-139 22-44 (190)
488 2v3c_C SRP54, signal recogniti 81.5 0.54 1.8E-05 50.4 2.1 44 117-161 100-143 (432)
489 2gco_A H9, RHO-related GTP-bin 81.4 0.73 2.5E-05 43.0 2.8 22 118-139 27-48 (201)
490 3cpj_B GTP-binding protein YPT 81.3 0.84 2.9E-05 43.4 3.2 22 118-139 15-36 (223)
491 4hlc_A DTMP kinase, thymidylat 81.2 0.79 2.7E-05 43.8 3.0 24 118-141 4-27 (205)
492 2xxa_A Signal recognition part 81.2 0.61 2.1E-05 50.0 2.3 44 117-160 101-144 (433)
493 2j1l_A RHO-related GTP-binding 81.1 0.73 2.5E-05 43.6 2.7 22 117-138 35-56 (214)
494 3llu_A RAS-related GTP-binding 81.1 0.66 2.3E-05 43.1 2.3 24 117-140 21-44 (196)
495 1ls1_A Signal recognition part 81.1 0.79 2.7E-05 46.4 3.1 24 118-141 100-123 (295)
496 2qu8_A Putative nucleolar GTP- 81.0 0.79 2.7E-05 43.8 2.9 23 116-138 29-51 (228)
497 2j0v_A RAC-like GTP-binding pr 80.9 0.78 2.7E-05 43.0 2.8 23 117-139 10-32 (212)
498 2gks_A Bifunctional SAT/APS ki 80.9 0.73 2.5E-05 50.9 2.9 24 118-141 374-397 (546)
499 3ozx_A RNAse L inhibitor; ATP 80.7 0.69 2.3E-05 51.0 2.6 26 117-142 295-320 (538)
500 3q3j_B RHO-related GTP-binding 80.6 0.9 3.1E-05 43.0 3.2 23 117-139 28-50 (214)
No 1
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=100.00 E-value=3.7e-38 Score=331.32 Aligned_cols=313 Identities=37% Similarity=0.571 Sum_probs=276.8
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++++|++|+|++.++.++..+.+.+..++|||+||||||||++|++++..++......++.|||....++..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS- 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC-
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc-
Confidence 3578999999999999998887777777899999999999999999999999877677778899987666666665542
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
+. ....+.+|+.++.+.+.+.++|.+++.+.+..+...+.+|++..+++||||||||+.++...++.|+.++
T Consensus 97 ~~--------~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~l 168 (350)
T 1g8p_A 97 TN--------VIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVA 168 (350)
T ss_dssp CC--------EEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHH
T ss_pred cc--------cccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHH
Confidence 11 1113578899999999999999988888777777788899999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (603)
+++...+.+.|.....+.++++|+|+|+.++.++++|++||++++.+..|.+.+.+.+|+.....+..++..|...|..+
T Consensus 169 e~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T 1g8p_A 169 QSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPK 248 (350)
T ss_dssp HHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccc
Confidence 99988899999999999999999999998889999999999998899877688899999998888777777777778888
Q ss_pred hHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCcc
Q 007444 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 329 ~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (603)
...+..+|..++.....+.++++++++|+.+++.+++.+.|..+.+++.|.++|.+.|+..|+.+||.+|+.+++.||.+
T Consensus 249 ~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 249 DMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 88899999999988888999999999999999999988899999999999999999999999999999999999999987
Q ss_pred CC
Q 007444 409 IN 410 (603)
Q Consensus 409 ~~ 410 (603)
..
T Consensus 329 ~~ 330 (350)
T 1g8p_A 329 RD 330 (350)
T ss_dssp --
T ss_pred cC
Confidence 44
No 2
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=2.2e-28 Score=255.96 Aligned_cols=259 Identities=23% Similarity=0.293 Sum_probs=199.6
Q ss_pred CCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccc
Q 007444 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~ 170 (603)
+.-+..|+|++.+++++..++.. .++|||+||||||||++|++++..++
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~----------------------------- 71 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMD----------------------------- 71 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhC-----------------------------
Confidence 44567899999999999877663 57999999999999999999999874
Q ss_pred ccccccccccccCCCeEEc--CCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 171 YDTAGNLKTQIARSPFVQI--PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l--~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
.+|+.+ ....+...++|...+. ...|...+.+|.+ .++||||||++.++...++.|+..|
T Consensus 72 -------------~~~~~i~~~~~~~~~~l~g~~~~~--~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l 133 (331)
T 2r44_A 72 -------------LDFHRIQFTPDLLPSDLIGTMIYN--QHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECM 133 (331)
T ss_dssp -------------CCEEEEECCTTCCHHHHHEEEEEE--TTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHH
T ss_pred -------------CCeEEEecCCCCChhhcCCceeec--CCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHH
Confidence 223332 2234445566654322 1224444566666 3689999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCC--CC--ccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE--GV--VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKM 324 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~--L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~ 324 (603)
+++.+.+ .|.....|.+|++|+|+||.+ +. ++++|+|||++++.+.. ++.+++.+|+........ ....
T Consensus 134 ~~~~~~~--~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~-p~~~~~~~il~~~~~~~~--~~~~-- 206 (331)
T 2r44_A 134 QEKQVTI--GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY-LDKESELEVMRRVSNMNF--NYQV-- 206 (331)
T ss_dssp HHSEEEE--TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC-CCHHHHHHHHHHHHCTTC--CCCC--
T ss_pred hcCceee--CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCC-CCHHHHHHHHHhccccCc--chhc--
Confidence 9998555 688888999999999999876 33 89999999998889985 589999999876543210 0000
Q ss_pred hhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC----------------CCchhHHHHHHHHHHHHHHHcCCC
Q 007444 325 VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------------CQGHRAELYAARVAKCLAALEGRE 388 (603)
Q Consensus 325 ~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~----------------v~s~Ra~i~llr~Ara~Aal~gr~ 388 (603)
........+..+++...++.+++++++++++++.... ..+.|..+.+++.|+++|.++|++
T Consensus 207 ---~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~ 283 (331)
T 2r44_A 207 ---QKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRD 283 (331)
T ss_dssp ---CCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ---cccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCC
Confidence 0011234566666777789999999999998764211 237999999999999999999999
Q ss_pred CCcHHHHHHHHHHHcCCCcc
Q 007444 389 KVNVDDLKKAVELVILPRSI 408 (603)
Q Consensus 389 ~Vt~eDv~~A~~lvl~hR~~ 408 (603)
.|+++||.+|+..++.||..
T Consensus 284 ~v~~~dv~~~~~~vl~~r~~ 303 (331)
T 2r44_A 284 YVLPEDIKEVAYDILNHRII 303 (331)
T ss_dssp BCCHHHHHHHHHHHHTTTSE
T ss_pred CCCHHHHHHHHHHHhHhhcc
Confidence 99999999999999999975
No 3
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.95 E-value=3.8e-28 Score=261.38 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=180.7
Q ss_pred ccccHHHHHHHHHhhhccCCC-------cEEEECCCCChHHHHHHHH-HHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 97 VVGQDAIKTALLLGAIDREIG-------GIAISGRRGTAKTVMARGL-HAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 97 IvGq~~~k~aL~laav~p~~~-------gVLL~GppGTGKT~lAral-a~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
|+||+.+|++|+++++ +.+ ||||.|+||| ||++++++ +.++|+..
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~------------------------ 267 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV------------------------ 267 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE------------------------
T ss_pred cCCCHHHHHHHHHHHc--CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE------------------------
Confidence 9999999999999887 333 8999999999 99999999 99887421
Q ss_pred ccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
|... .+.+...|.++ +. .. +| ..+++|.+..||+|||||||||++++..+..|+++|
T Consensus 268 -----------------ft~g-~~ss~~gLt~s--~r-~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaM 324 (506)
T 3f8t_A 268 -----------------YVDL-RRTELTDLTAV--LK-ED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAM 324 (506)
T ss_dssp -----------------EEEG-GGCCHHHHSEE--EE-ES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHH
T ss_pred -----------------EecC-CCCCccCceEE--EE-cC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHH
Confidence 1110 01122234443 11 11 57 889999999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCCC----------CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----------GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~e----------g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+++.+++. |. .+|++|.||||+||.+ ..|+++++|||++++.+-..++.+...+
T Consensus 325 Ee~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e------------ 388 (506)
T 3f8t_A 325 DKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEE------------ 388 (506)
T ss_dssp HHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC---------------------
T ss_pred hCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhc------------
Confidence 99998776 76 9999999999999975 3789999999988655442233332111
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc--------------CCCCchhHHHHHHHHHHHHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR--------------GGCQGHRAELYAARVAKCLAAL 384 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~--------------~~v~s~Ra~i~llr~Ara~Aal 384 (603)
. .......+.++..+..+++..-.+.+++++.++|.++... ....+.|+.+.++|+|+|+|.+
T Consensus 389 -~--~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L 465 (506)
T 3f8t_A 389 -Q--DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARM 465 (506)
T ss_dssp --------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred -c--cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 0 0122334678888888884444678999999988876321 1134889999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHcC
Q 007444 385 EGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 385 ~gr~~Vt~eDv~~A~~lvl~ 404 (603)
+|+++|+++|+.+|+.++..
T Consensus 466 ~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 466 RLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp TTCSEECHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999998743
No 4
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.6e-27 Score=267.12 Aligned_cols=259 Identities=20% Similarity=0.202 Sum_probs=195.3
Q ss_pred CcccccHHHHHHHHHhhhccC-----------CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 95 AAVVGQDAIKTALLLGAIDRE-----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p~-----------~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
..|+|++.+|+++++++.... ..+|||+||||||||++|++++..+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~-------------------- 354 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA-------------------- 354 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE--------------------
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc--------------------
Confidence 568999999999977666211 1189999999999999999999988531
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
++....+.+...+.|.+ .....+|....++|.+..|++||||||||+.+++..++.
T Consensus 355 ----------------------~~~~~~~~~~~~l~~~~--~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~ 410 (595)
T 3f9v_A 355 ----------------------VYTTGKGSTAAGLTAAV--VREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVA 410 (595)
T ss_dssp ----------------------ECCCTTCSTTTTSEEEC--SSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHH
T ss_pred ----------------------eecCCCcccccccccee--eeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhh
Confidence 11111122333444432 122345777788999999999999999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC------------CccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg------------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
|+.+|+++.+.+.+.|.....+.++.+|||+||..| .|+++|+|||++.+.+...++.+ ...|.+..
T Consensus 411 Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~i 489 (595)
T 3f9v_A 411 IHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYI 489 (595)
T ss_dssp HHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHH
T ss_pred hHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHH
Confidence 999999999999999999999999999999999764 68899999999766655444555 66665544
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc-----------CCCCchhHHHHHHHHHHH
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-----------GGCQGHRAELYAARVAKC 380 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~-----------~~v~s~Ra~i~llr~Ara 380 (603)
....... .....-..+.+...+..|+..+. ..+++++.+.|.++... ....+.|.+..++++|++
T Consensus 490 l~~~~~~---~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a 565 (595)
T 3f9v_A 490 LDVHSGK---STKNIIDIDTLRKYIAYARKYVT-PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565 (595)
T ss_dssp HTTTCCC---SSSSTTCCTTTHHHHHHHHHHHC-CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHH
T ss_pred HHHhhcc---ccccCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHH
Confidence 3321110 00111223456777777776643 27888888999888653 124588999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHH
Q 007444 381 LAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 381 ~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
+|.+++++.|+.+|+.+|+.++
T Consensus 566 ~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 566 YAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhCcCCCCHHHHHHHHHHH
Confidence 9999999999999999999886
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.94 E-value=1.1e-26 Score=256.13 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=190.9
Q ss_pred CcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccc
Q 007444 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~ 174 (603)
..|+|++++++.+..++. ..++|||+||||||||++|++|+..+..
T Consensus 22 ~~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l~~-------------------------------- 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN-------------------------------- 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGBSS--------------------------------
T ss_pred hhhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHHhh--------------------------------
Confidence 358999999999987776 4589999999999999999999998742
Q ss_pred ccccccccCCCeEEcCCCC-ccccccccccchhccccCcc-cccccchhcccCceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 175 GNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~-~~~~l~G~ldl~~~l~~g~~-~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
..+|..+.... +.+.++|.+++......|.. .+..|.+. ..+|||||||+++++.+++.|+.+|+++.
T Consensus 68 --------~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~--~~~IL~IDEI~r~~~~~q~~LL~~lee~~ 137 (500)
T 3nbx_X 68 --------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERQ 137 (500)
T ss_dssp --------CCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGG--GCSEEEEESGGGCCHHHHHHHHHHHHSSE
T ss_pred --------hhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCC--cceeeeHHhHhhhcHHHHHHHHHHHHHHh
Confidence 33444444332 56788887654433333332 24455543 35799999999999999999999999998
Q ss_pred eeEeeCCeeeEecCCcEEEEEeCC--CCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhH
Q 007444 253 NIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (603)
Q Consensus 253 ~~v~r~G~s~~~p~~~~lIattNp--~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~ 330 (603)
+.+ .|.....|.+| +|+|||+ +.+.++++|+|||.+.+.++.|...+++.+|+.........+.. ....
T Consensus 138 v~i--~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~------~~~~ 208 (500)
T 3nbx_X 138 FRN--GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVP------DALQ 208 (500)
T ss_dssp EEC--SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSC------TTTS
T ss_pred ccC--CCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCC------ccce
Confidence 544 78888888887 4555664 44667899999999999998776667788887643211111100 0111
Q ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHc------CCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 331 LAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 331 ~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~------~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
...+.+..++.....+.+++++++++++++.. ....|.|+.+.+++.|+++|.++|+++|+++||. ++..+|.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 22455667777788899999999999998742 1233889999999999999999999999999999 8999999
Q ss_pred CCcc
Q 007444 405 PRSI 408 (603)
Q Consensus 405 hR~~ 408 (603)
||..
T Consensus 288 hr~~ 291 (500)
T 3nbx_X 288 YDAQ 291 (500)
T ss_dssp SSHH
T ss_pred cCch
Confidence 9864
No 6
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.91 E-value=4.3e-24 Score=221.86 Aligned_cols=230 Identities=24% Similarity=0.302 Sum_probs=175.3
Q ss_pred cccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
+|+|++..++.+ .+..+.+...+|||+||+|||||++|++||..+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------------------------------- 51 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR------------------------------- 51 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC-------------------------------
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc-------------------------------
Confidence 589999888777 33344456789999999999999999999998753
Q ss_pred cccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHH
Q 007444 174 AGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l 248 (603)
.+.||+.++++.. ++.|||+ +++.++|......|++..+++|+||||||+.++...|..|+.++
T Consensus 52 --------~~~~~v~v~~~~~~~~l~~~~lfg~---~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l 120 (304)
T 1ojl_A 52 --------SDRPLVTLNCAALNESLLESELFGH---EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAI 120 (304)
T ss_dssp --------SSSCCCEEECSSCCHHHHHHHHTCC---CSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHH
T ss_pred --------cCCCeEEEeCCCCChHHHHHHhcCc---cccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHH
Confidence 1456666655543 4567776 35666777667889999999999999999999999999999999
Q ss_pred HcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 249 ~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
+++. +.+.|.....+.++.+|+|||.+ .|.++++|++||... .+..|+..++..+|..+..+|....
T Consensus 121 ~~~~--~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~-~i~lPpL~eR~edi~~l~~~~l~~~---- 193 (304)
T 1ojl_A 121 QERE--VQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVV-AIEMPSLRQRREDIPLLADHFLRRF---- 193 (304)
T ss_dssp HSSB--CCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSE-EEECCCSGGGGGGHHHHHHHHHHHH----
T ss_pred hcCE--eeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCee-EEeccCHHHhHhhHHHHHHHHHHHH----
Confidence 9987 67889888888899999999974 367999999999844 6666777777777776665553211
Q ss_pred hhhhHhhHHHHHHHHHHHH-hccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 323 KMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~-~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
... ..+...+++++++.|..+.|++|+ |.+.++++.+.. +.....|+.+|+.
T Consensus 194 ----------------~~~~~~~~~~~s~~a~~~L~~~~wpGnv---ReL~~~l~~~~~---~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 194 ----------------AERNRKVVKGFTPQAMDLLIHYDWPGNI---RELENAIERAVV---LLTGEYISERELP 246 (304)
T ss_dssp ----------------HHHTTCCCCCBCHHHHHHHHHCCCSSHH---HHHHHHHHHHHH---HCCSSSBCGGGSC
T ss_pred ----------------HHHhccCccCCCHHHHHHHHcCCCCCCH---HHHHHHHHHHHH---hCCCCcccHHhhh
Confidence 111 123457999999999999999876 877777765543 4455678888774
No 7
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.91 E-value=4.9e-24 Score=216.05 Aligned_cols=233 Identities=23% Similarity=0.299 Sum_probs=158.0
Q ss_pred CCCCcccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccc
Q 007444 92 FPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i 169 (603)
++|++|+|++..+..+. +..+.....+|||+||+|||||++|++++..++.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--------------------------- 55 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--------------------------- 55 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------------------------
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---------------------------
Confidence 67999999998887763 3333345689999999999999999999998752
Q ss_pred cccccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHH
Q 007444 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (603)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~L 244 (603)
...+|+.++++.. +..++|.. ++.+.|......|++..+++|+||||||+.++...++.|
T Consensus 56 ------------~~~~~~~v~~~~~~~~~~~~~l~g~~---~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~L 120 (265)
T 2bjv_A 56 ------------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 (265)
T ss_dssp ------------TTSCEEEEEGGGSCHHHHHHHHHCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHH
T ss_pred ------------cCCCeEEEecCCCChhHHHHHhcCCc---ccccccccccccchhhhcCCcEEEEechHhcCHHHHHHH
Confidence 1456777665543 34566652 345556655678999999999999999999999999999
Q ss_pred HHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhh
Q 007444 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (603)
Q Consensus 245 L~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~ 318 (603)
+.+++++. +.+.|.....+.++.+|+|+|+. .+.++++|++||... .+..|+..+++.+|..+..+|...
T Consensus 121 l~~l~~~~--~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~-~i~lp~L~~R~~di~~l~~~~l~~- 196 (265)
T 2bjv_A 121 LRVIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFD-VVQLPPLRERESDIMLMAEYFAIQ- 196 (265)
T ss_dssp HHHHHHCE--ECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSE-EEECCCGGGCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCC--eecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCc-EEeCCChhhhhHHHHHHHHHHHHH-
Confidence 99999987 67778877778899999999975 357899999999753 555566666556666554444211
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 319 NEVFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 319 ~~~~~~~~~~~~~l~~~I~~ar~~l~~--v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
+ ++..... ..+++++++.|..+.|++|+ |.+.++++.+...+ ....|+.+|+
T Consensus 197 -----------------~--~~~~~~~~~~~~~~~a~~~L~~~~~~gn~---reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 197 -----------------M--CREIKLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp -----------------H--HHHTTCSSCCCBCHHHHHHHHHSCCTTHH---HHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred -----------------H--HHHhCCCcccCcCHHHHHHHHhCCCCCCH---HHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 0 1111112 37999999999999998876 77777776554333 3446766665
No 8
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.90 E-value=2.7e-23 Score=222.94 Aligned_cols=233 Identities=23% Similarity=0.309 Sum_probs=189.1
Q ss_pred CCcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccc
Q 007444 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (603)
Q Consensus 94 f~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~ 171 (603)
+..++|++...+.+ .+..+.+...+|||+|++||||+++|+++|...++
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r----------------------------- 186 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR----------------------------- 186 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-----------------------------
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-----------------------------
Confidence 55788888766666 34445567788999999999999999999998753
Q ss_pred cccccccccccCCCeEEcCCCCc-----cccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHH
Q 007444 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (603)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~-----~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~ 246 (603)
...||+.++++.. +++|||+ +++.++|....++|++..|++|+||||||+.|+.++|..|+.
T Consensus 187 ----------~~~~fv~v~~~~~~~~~~~~elfg~---~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~ 253 (387)
T 1ny5_A 187 ----------SKEPFVALNVASIPRDIFEAELFGY---EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLR 253 (387)
T ss_dssp ----------TTSCEEEEETTTSCHHHHHHHHHCB---CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHH
T ss_pred ----------CCCCeEEEecCCCCHHHHHHHhcCC---CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHH
Confidence 2568888776654 5678897 577888888889999999999999999999999999999999
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
+++++. +.+.|.....+.++.+|+|||.+ +|.++++|++|+... .+..|+..+++.||..+..+|....
T Consensus 254 ~l~~~~--~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~-- 328 (387)
T 1ny5_A 254 VIESGK--FYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI-EIEIPPLRERKEDIIPLANHFLKKF-- 328 (387)
T ss_dssp HHHHSE--ECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-EEECCCGGGCHHHHHHHHHHHHHHH--
T ss_pred HHhcCc--EEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCC-eecCCcchhccccHHHHHHHHHHHH--
Confidence 999998 77889988899999999999973 588999999999876 6777889999999998887774321
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~-v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~ 397 (603)
++..... ..+++++++.|..+.|++|+ |.+.++++.|.. +.....|+.+|+..
T Consensus 329 ------------------~~~~~~~~~~~~~~a~~~l~~~~wpGNv---reL~~~i~~~~~---~~~~~~i~~~~l~~ 382 (387)
T 1ny5_A 329 ------------------SRKYAKEVEGFTKSAQELLLSYPWYGNV---RELKNVIERAVL---FSEGKFIDRGELSC 382 (387)
T ss_dssp ------------------HHHTTCCCCEECHHHHHHHHHSCCTTHH---HHHHHHHHHHHH---HCCSSEECHHHHHH
T ss_pred ------------------HHHcCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHHHH---hCCCCcCcHHHCcH
Confidence 1222223 35999999999999999988 777777755543 44456899999864
No 9
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.88 E-value=2.6e-22 Score=213.84 Aligned_cols=217 Identities=27% Similarity=0.373 Sum_probs=175.8
Q ss_pred CcccccHHHHHHH--HHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccc
Q 007444 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (603)
Q Consensus 95 ~~IvGq~~~k~aL--~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~ 172 (603)
..++|++..+..+ .+..+.+...+|||.|++||||+++|+++|...++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r------------------------------ 178 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR------------------------------ 178 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC------------------------------
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc------------------------------
Confidence 4688988777666 34445566788999999999999999999998753
Q ss_pred ccccccccccCCCeEEcC-----CCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHH
Q 007444 173 TAGNLKTQIARSPFVQIP-----LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (603)
Q Consensus 173 ~~~~~~~~~~~~pfv~l~-----~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~ 247 (603)
..+|+.++ ....++.|||+ +++.++|....++|++..|++|+||||||+.|+..+|..||.+
T Consensus 179 ----------~~~fv~vnc~~~~~~~~~~~lfg~---~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~ 245 (368)
T 3dzd_A 179 ----------KGAFVDLNCASIPQELAESELFGH---EKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRV 245 (368)
T ss_dssp ----------CSCEEEEESSSSCTTTHHHHHHEE---CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHH
T ss_pred ----------cCCcEEEEcccCChHHHHHHhcCc---cccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHH
Confidence 22255544 44556788997 5788889888899999999999999999999999999999999
Q ss_pred HHcCceeEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHH
Q 007444 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (603)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~ 321 (603)
++++. +.+.|.....+.++.+|++||.+ +|.|+++|++|+... .+..|+..+++.||..+..+|....
T Consensus 246 l~~~~--~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~--- 319 (368)
T 3dzd_A 246 LETGS--FTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVF-QIYLPPLRERGKDVILLAEYFLKKF--- 319 (368)
T ss_dssp HHHSE--ECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSE-EEECCCGGGSTTHHHHHHHHHHHHH---
T ss_pred HHhCC--cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCe-EEeCCChhhchhhHHHHHHHHHHHH---
Confidence 99998 77889888889999999999964 488999999999876 6667889999999988887774321
Q ss_pred hhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 007444 322 FKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (603)
Q Consensus 322 ~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara 380 (603)
++.. .+.+.+++++++.|..+.|++|+ |.+.++++.|..
T Consensus 320 -----------------~~~~~~~~~~~~~~a~~~L~~~~wpGNv---reL~n~i~~~~~ 359 (368)
T 3dzd_A 320 -----------------AKEYKKNCFELSEETKEYLMKQEWKGNV---RELKNLIERAVI 359 (368)
T ss_dssp -----------------HHHTTCCCCCBCHHHHHHHHTCCCTTHH---HHHHHHHHHHHH
T ss_pred -----------------HHHcCCCCCCcCHHHHHHHHhCCCCcHH---HHHHHHHHHHHH
Confidence 1222 23357999999999999999998 777777755543
No 10
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.87 E-value=1.5e-21 Score=220.90 Aligned_cols=286 Identities=21% Similarity=0.277 Sum_probs=189.6
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc-ccccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE-WEDGL 165 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~-~~~~~ 165 (603)
.+.++..|++++|++.++..+..++. ...+++|+||+|||||++|++|+.+++... ...+.++|++.+... ++..+
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELLPTET-LEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTSCCSS-CEEEEEECCTTCTTSCEEEEE
T ss_pred ccccccccceEECchhhHhhcccccc--CCCEEEEEeCCCCCHHHHHHHHhccCCccc-CCeEEEeCCcccccCCcEEEE
Confidence 35677889999999999999877655 347899999999999999999999997532 122334444433211 11110
Q ss_pred cc-c---c----------------------ccccccc---ccccccCCCeEEcCCCCccccccccccchh----ccccC-
Q 007444 166 DE-K---A----------------------EYDTAGN---LKTQIARSPFVQIPLGVTEDRLIGSVDVEE----SVKTG- 211 (603)
Q Consensus 166 ~~-~---i----------------------~~~~~~~---~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~----~l~~g- 211 (603)
.. . + ..+.... ........+++.. ...+...++|.++... ++.+|
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECCCCC----CCCCG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEechhhcCCccccc
Confidence 00 0 0 0000000 0000123455544 3456677888764332 22333
Q ss_pred cccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeCCe----------eeEecCCcEEEEEeCCCC-CC
Q 007444 212 TTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI----------SFKHPCKPLLIATYNPEE-GV 280 (603)
Q Consensus 212 ~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~----------s~~~p~~~~lIattNp~e-g~ 280 (603)
.....+|.+..|++|+|||||++.|++.+++.|+.+|+++.+.+ .|. ....|.+|.||+|+|++. ..
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~--~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPI--TGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECC--BCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEe--cccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 23457999999999999999999999999999999999998544 454 556788999999999753 46
Q ss_pred ccHHHHhhhc---ccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHH-HHHhccccCCCHHHHHHH
Q 007444 281 VREHLLDRIA---INLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL-AREYLKDVAIGREQLKYL 356 (603)
Q Consensus 281 L~~~LldRf~---l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~-ar~~l~~v~is~~~l~~L 356 (603)
++++|++||. +.+.+. ...+...+.+..... .+.. .........++++++..|
T Consensus 267 l~~~l~~R~~v~~i~i~l~--~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 267 MHPALRSRIRGYGYEVYMR--TTMPDTIENRRKLVQ---------------------FVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp SCHHHHHHHHHHSEEEECC--SEEECCHHHHHHHHH---------------------HHHHHHHHHCSSCCBBHHHHHHH
T ss_pred cCHHHHHHhhccceEeecc--ccccCCHHHHHHHHH---------------------HHHHHHhhccCcccCCHHHHHHH
Confidence 8999999997 344432 211111111111111 1111 111123357999999999
Q ss_pred HHHHHcC-CCC-----chhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007444 357 VMEALRG-GCQ-----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (603)
Q Consensus 357 ~~~a~~~-~v~-----s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (603)
++++++. +.. ..|....+++.|.++|..++++.|+.+||.+|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9998753 322 47999999999999999999999999999999865
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-21 Score=208.55 Aligned_cols=220 Identities=19% Similarity=0.156 Sum_probs=162.9
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhc----c---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeecccccc
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAID----R---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIAN 152 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~----p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n 152 (603)
..+.+.++|++|.|.+++|+.|.-+... | ..+||||+||||||||++|+++|..+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------------ 206 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------------ 206 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------------
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------------
Confidence 3445789999999999999998433322 1 24789999999999999999999986
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEE
Q 007444 153 ADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLY 229 (603)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ 229 (603)
+.+|+.+..+...+.++|.- ++.+ ..+|..| ...|||
T Consensus 207 ------------------------------~~~f~~v~~s~l~sk~vGes--e~~v--------r~lF~~Ar~~aP~IIF 246 (405)
T 4b4t_J 207 ------------------------------DCKFIRVSGAELVQKYIGEG--SRMV--------RELFVMAREHAPSIIF 246 (405)
T ss_dssp ------------------------------TCEEEEEEGGGGSCSSTTHH--HHHH--------HHHHHHHHHTCSEEEE
T ss_pred ------------------------------CCCceEEEhHHhhccccchH--HHHH--------HHHHHHHHHhCCceEe
Confidence 67888888888888888852 1211 1234433 467999
Q ss_pred ecccccCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccc
Q 007444 230 IDEINLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINL 293 (603)
Q Consensus 230 IDEi~~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v 293 (603)
||||+.+.. .+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+..|
T Consensus 247 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATN-rpd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 247 MDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATN-RLDILDPALLRPGRIDRKI 314 (405)
T ss_dssp EESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEES-CSSSSCHHHHSTTSSCCEE
T ss_pred eecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccC-ChhhCCHhHcCCCcCceEE
Confidence 999998731 25677888777422 112578999999 88899999998 999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAEL 372 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i 372 (603)
.++. |+.+.|.+|++... ....++++ .+..|+. .....+....-
T Consensus 315 ~i~l-Pd~~~R~~Il~~~~-------------------------------~~~~l~~dvdl~~lA~---~t~G~SGADi~ 359 (405)
T 4b4t_J 315 EFPP-PSVAARAEILRIHS-------------------------------RKMNLTRGINLRKVAE---KMNGCSGADVK 359 (405)
T ss_dssp ECCC-CCHHHHHHHHHHHH-------------------------------TTSBCCSSCCHHHHHH---HCCSCCHHHHH
T ss_pred EcCC-cCHHHHHHHHHHHh-------------------------------cCCCCCccCCHHHHHH---HCCCCCHHHHH
Confidence 9995 58999999976421 12223222 1344443 34445777778
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 373 YAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 373 ~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
.+++.|...|..+++..|+.+|+..|+.-++.
T Consensus 360 ~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 360 GVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 88888888888899999999999999998764
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.85 E-value=1.1e-20 Score=197.76 Aligned_cols=226 Identities=17% Similarity=0.170 Sum_probs=161.0
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhh-----ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav-----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
..+..+.++.+|++|+|++.++..+..... .....+|||+||||||||++|++++..+
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------------- 79 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------------- 79 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----------------
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----------------
Confidence 445556778899999999999998843222 2345689999999999999999999886
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCC
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD 237 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~ 237 (603)
+.+|+.+...... ..| .+...+...+++++||||||+.++
T Consensus 80 -------------------------~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 80 -------------------------SANIKTTAAPMIE--KSG-------------DLAAILTNLSEGDILFIDEIHRLS 119 (338)
T ss_dssp -------------------------TCCEEEEEGGGCC--SHH-------------HHHHHHHTCCTTCEEEEETGGGCC
T ss_pred -------------------------CCCeEEecchhcc--chh-------------HHHHHHHhccCCCEEEEechhhcC
Confidence 3345544332211 011 111112234678999999999999
Q ss_pred HHHHHHHHHHHHcCceeEeeC------CeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 238 EGISNLLLNVLTEGVNIVERE------GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~------G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
...++.|+.+++++.+.+... ......| ++++|++|| ..+.++++|++||+..+.+. +++.+++.+++...
T Consensus 120 ~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn-~~~~l~~~L~~R~~~~i~l~-~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 120 PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATT-RAGMLSNPLRDRFGMQFRLE-FYKDSELALILQKA 196 (338)
T ss_dssp HHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEES-CGGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCC-CccccCHHHHhhcCEEeeCC-CcCHHHHHHHHHHH
Confidence 999999999999987543211 1122334 689999999 56668999999998888998 56777777665532
Q ss_pred HHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCc
Q 007444 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVN 391 (603)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt 391 (603)
.. . ..+.+++++++.|+. .|.+++ |...++++.+...|.+.+...|+
T Consensus 197 ~~---------------------------~--~~~~~~~~~~~~l~~-~~~G~~---r~l~~~l~~~~~~a~~~~~~~i~ 243 (338)
T 3pfi_A 197 AL---------------------------K--LNKTCEEKAALEIAK-RSRSTP---RIALRLLKRVRDFADVNDEEIIT 243 (338)
T ss_dssp HH---------------------------H--TTCEECHHHHHHHHH-TTTTCH---HHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HH---------------------------h--cCCCCCHHHHHHHHH-HHCcCH---HHHHHHHHHHHHHHHhhcCCccC
Confidence 11 0 135689999998888 666654 99999999998899999999999
Q ss_pred HHHHHHHHHH
Q 007444 392 VDDLKKAVEL 401 (603)
Q Consensus 392 ~eDv~~A~~l 401 (603)
.+++..++..
T Consensus 244 ~~~~~~~~~~ 253 (338)
T 3pfi_A 244 EKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 13
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4e-21 Score=205.64 Aligned_cols=220 Identities=19% Similarity=0.193 Sum_probs=160.7
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhh----cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccC
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~ 153 (603)
.+.+.++|++|.|.+++|..|.-... +| ...|||||||||||||++|+++|..+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------------- 240 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------------- 240 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-------------
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-------------
Confidence 34678999999999999998843322 22 35789999999999999999999986
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEe
Q 007444 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYI 230 (603)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~I 230 (603)
+.+|+.+..+...+.++|.- ++.+ ..+|..| ...||||
T Consensus 241 -----------------------------~~~fi~v~~s~l~sk~vGes--ek~i--------r~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 241 -----------------------------SATFLRIVGSELIQKYLGDG--PRLC--------RQIFKVAGENAPSIVFI 281 (437)
T ss_dssp -----------------------------TCEEEEEESGGGCCSSSSHH--HHHH--------HHHHHHHHHTCSEEEEE
T ss_pred -----------------------------CCCEEEEEHHHhhhccCchH--HHHH--------HHHHHHHHhcCCcEEEE
Confidence 67888888887788888852 1111 1233333 3579999
Q ss_pred cccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccc
Q 007444 231 DEINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLS 294 (603)
Q Consensus 231 DEi~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~ 294 (603)
|||+.+- ..++..||..|+.-. ...+++|||||| .+..|+++|++ ||+..|.
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRfD~~I~ 349 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKVIMATN-KIETLDPALIRPGRIDRKIL 349 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEEEEEES-CSTTCCTTSSCTTTEEEEEC
T ss_pred ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEEEEeCC-ChhhcCHHHhcCCceeEEEE
Confidence 9999762 134566676666322 112578999999 88899999998 9999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHH
Q 007444 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 295 v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
++. |+.+.|.+|++... ....++++ .++.|+.. ....+.+..-.
T Consensus 350 v~l-Pd~~~R~~Il~~~l-------------------------------~~~~l~~dvdl~~LA~~---T~GfSGADI~~ 394 (437)
T 4b4t_I 350 FEN-PDLSTKKKILGIHT-------------------------------SKMNLSEDVNLETLVTT---KDDLSGADIQA 394 (437)
T ss_dssp CCC-CCHHHHHHHHHHHH-------------------------------TTSCBCSCCCHHHHHHH---CCSCCHHHHHH
T ss_pred cCC-cCHHHHHHHHHHHh-------------------------------cCCCCCCcCCHHHHHHh---CCCCCHHHHHH
Confidence 995 58999999976421 12223222 13444443 34446777888
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 374 AARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
+++.|...|..+++..|+.+|+..|++.+...
T Consensus 395 l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 395 MCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 88888888888999999999999999887653
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.2e-21 Score=204.63 Aligned_cols=219 Identities=19% Similarity=0.165 Sum_probs=159.5
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.++|++|.|.+++|..|.-... + +..+||||+||||||||++|++||..+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-------------- 267 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-------------- 267 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--------------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--------------
Confidence 4577999999999999998843221 1 235789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+..+...+.++|.- ++.+ ..++..| ...|||||
T Consensus 268 ----------------------------~~~fi~vs~s~L~sk~vGes--ek~i--------r~lF~~Ar~~aP~IIfiD 309 (467)
T 4b4t_H 268 ----------------------------DATFIRVIGSELVQKYVGEG--ARMV--------RELFEMARTKKACIIFFD 309 (467)
T ss_dssp ----------------------------TCEEEEEEGGGGCCCSSSHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCeEEEEhHHhhcccCCHH--HHHH--------HHHHHHHHhcCCceEeec
Confidence 57888888877778888852 1111 1233333 46799999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
|++.+- ..++..||..|+... ...+++|||||| ....|+++|++ ||+..|.+
T Consensus 310 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~ViVIaATN-rpd~LDpALlRpGRFD~~I~i 377 (467)
T 4b4t_H 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----------PRGNIKVMFATN-RPNTLDPALLRPGRIDRKVEF 377 (467)
T ss_dssp CCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----------CTTTEEEEEECS-CTTSBCHHHHSTTTCCEEECC
T ss_pred ccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----------CCCcEEEEeCCC-CcccCChhhhccccccEEEEe
Confidence 999772 124566677776322 122578999999 78899999998 99999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~l 374 (603)
+. ++.+.|.+|++... ..+.++.+ .++.|+.. ....+.+....+
T Consensus 378 ~l-Pd~~~R~~Ilk~~l-------------------------------~~~~l~~dvdl~~LA~~---T~GfSGADI~~l 422 (467)
T 4b4t_H 378 SL-PDLEGRANIFRIHS-------------------------------KSMSVERGIRWELISRL---CPNSTGAELRSV 422 (467)
T ss_dssp CC-CCHHHHHHHHHHHH-------------------------------TTSCBCSSCCHHHHHHH---CCSCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHh-------------------------------cCCCCCCCCCHHHHHHH---CCCCCHHHHHHH
Confidence 95 59999999976421 11222221 13445444 334466777788
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
++.|...|..+++..|+.+|+..|+.-++..
T Consensus 423 ~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 423 CTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 8888888888999999999999999988754
No 15
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.6e-21 Score=206.46 Aligned_cols=218 Identities=19% Similarity=0.185 Sum_probs=158.2
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhc----c---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAID----R---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~----p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+..+|++|.|.+++|..|.-..+. | ..+|||||||||||||++|+++|..+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-------------- 239 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-------------- 239 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--------------
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--------------
Confidence 45789999999999999998543332 2 35789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+..+...+.++|.- ++.+ ..++..| .+.|||||
T Consensus 240 ----------------------------~~~f~~v~~s~l~~~~vGes--e~~i--------r~lF~~A~~~aP~IifiD 281 (434)
T 4b4t_M 240 ----------------------------NATFLKLAAPQLVQMYIGEG--AKLV--------RDAFALAKEKAPTIIFID 281 (434)
T ss_dssp ----------------------------TCEEEEEEGGGGCSSCSSHH--HHHH--------HHHHHHHHHHCSEEEEEE
T ss_pred ----------------------------CCCEEEEehhhhhhcccchH--HHHH--------HHHHHHHHhcCCeEEeec
Confidence 57888888877778888851 1111 1233333 46799999
Q ss_pred ccccCC-----------H---HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD-----------E---GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~-----------~---~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
||+.+- . .++..||..|+.-. -..+++|||||| .+..|+++|++ ||+..|.+
T Consensus 282 EiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~ViVIaaTN-rp~~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 282 ELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----------SDDRVKVLAATN-RVDVLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp CTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----------SSCSSEEEEECS-SCCCCCTTTCSTTSEEEEEEC
T ss_pred chhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----------CCCCEEEEEeCC-CchhcCHhHhcCCceeEEEEe
Confidence 998761 1 24566777776322 112579999999 78899999998 99999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYA 374 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~l 374 (603)
+. |+.+.|.+|++.... ...+++++ ++.|+. .....+.+..-.+
T Consensus 350 ~l-Pd~~~R~~Il~~~~~-------------------------------~~~~~~dvdl~~lA~---~t~G~sGADi~~l 394 (434)
T 4b4t_M 350 PL-PSEDSRAQILQIHSR-------------------------------KMTTDDDINWQELAR---STDEFNGAQLKAV 394 (434)
T ss_dssp CC-CCHHHHHHHHHHHHH-------------------------------HSCBCSCCCHHHHHH---HCSSCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHhc-------------------------------CCCCCCcCCHHHHHH---hCCCCCHHHHHHH
Confidence 95 599999999864321 11121111 344443 3344467777788
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
++.|...|..+++..|+.+|+.+|+.-+.+
T Consensus 395 ~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 395 TVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 888888888899999999999999987644
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-20 Score=203.20 Aligned_cols=219 Identities=20% Similarity=0.201 Sum_probs=159.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.++|++|.|.+++|..|.-... +| ...|||||||||||||++|++||..+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-------------- 239 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-------------- 239 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--------------
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--------------
Confidence 4678999999999999998843332 22 24789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+..+...+.++|.- ++. ...++..| .+.|||||
T Consensus 240 ----------------------------~~~~~~v~~s~l~sk~~Ges--e~~--------ir~~F~~A~~~~P~IifiD 281 (437)
T 4b4t_L 240 ----------------------------GANFIFSPASGIVDKYIGES--ARI--------IREMFAYAKEHEPCIIFMD 281 (437)
T ss_dssp ----------------------------TCEEEEEEGGGTCCSSSSHH--HHH--------HHHHHHHHHHSCSEEEEEE
T ss_pred ----------------------------CCCEEEEehhhhccccchHH--HHH--------HHHHHHHHHhcCCceeeee
Confidence 57888888777777788741 111 11233333 46899999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
||+.+. ..+++.||..|+.-. ...+++||+||| .+..|+++|++ ||+..|.+
T Consensus 282 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATN-rp~~LDpAllRpGRfD~~I~i 349 (437)
T 4b4t_L 282 EVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATN-RPDTLDPALLRPGRLDRKVEI 349 (437)
T ss_dssp CCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEES-STTSSCTTTTSTTSEEEEECC
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecC-CchhhCHHHhCCCccceeeec
Confidence 999762 134677888887432 112578999999 78889999998 49999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~l 374 (603)
+. |+.+.|.+|++.... ...++++ .+..| +......+.+..-.+
T Consensus 350 ~l-Pd~~~R~~Il~~~~~-------------------------------~~~~~~d~dl~~l---A~~t~G~sGADi~~l 394 (437)
T 4b4t_L 350 PL-PNEAGRLEIFKIHTA-------------------------------KVKKTGEFDFEAA---VKMSDGFNGADIRNC 394 (437)
T ss_dssp CC-CCHHHHHHHHHHHHH-------------------------------TSCBCSCCCHHHH---HHTCCSCCHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHhc-------------------------------CCCCCcccCHHHH---HHhCCCCCHHHHHHH
Confidence 95 489999999764321 1111111 13334 334444567777788
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
++.|...|..+++..|+.+|+..|++-+..-
T Consensus 395 ~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 395 ATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 8888888888999999999999999887543
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.9e-20 Score=200.69 Aligned_cols=221 Identities=17% Similarity=0.191 Sum_probs=160.4
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhh----cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav----~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.++|++|.|.+++|..|.-... +| ..+||||+||||||||++|+++|..+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-------------- 230 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-------------- 230 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--------------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--------------
Confidence 4577999999999999998843222 11 35789999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+..+...+.++|.- ++.+ ..+|..| ...|||||
T Consensus 231 ----------------------------~~~~~~v~~~~l~~~~~Ge~--e~~i--------r~lF~~A~~~aP~IifiD 272 (428)
T 4b4t_K 231 ----------------------------KAAFIRVNGSEFVHKYLGEG--PRMV--------RDVFRLARENAPSIIFID 272 (428)
T ss_dssp ----------------------------TCEEEEEEGGGTCCSSCSHH--HHHH--------HHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCCeEEEecchhhccccchh--HHHH--------HHHHHHHHHcCCCeeech
Confidence 57888888777777888852 1111 1233333 35799999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
|++.+. ..+++.||..|+.-. ...+++|||||| .+..|+++|++ ||+..|.+
T Consensus 273 EiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~vI~aTN-~~~~LD~AllRpGRfd~~I~~ 340 (428)
T 4b4t_K 273 EVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKVIMATN-RADTLDPALLRPGRLDRKIEF 340 (428)
T ss_dssp CTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEEEEEES-CSSSCCHHHHSSSSEEEEEEC
T ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEEEEecC-ChhhcChhhhcCCcceEEEEc
Confidence 998651 235778888887422 112578999999 88899999998 99999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHH
Q 007444 296 DLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYA 374 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~l 374 (603)
+.+++.++|.+|+..... ...+.++ .++.|+.. ....+.+..-.+
T Consensus 341 p~lPd~~~R~~Il~~~~~-------------------------------~~~l~~~~dl~~lA~~---t~G~sgadi~~l 386 (428)
T 4b4t_K 341 PSLRDRRERRLIFGTIAS-------------------------------KMSLAPEADLDSLIIR---NDSLSGAVIAAI 386 (428)
T ss_dssp CSSCCHHHHHHHHHHHHH-------------------------------SSCBCTTCCHHHHHHH---TTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-------------------------------CCCCCcccCHHHHHHH---CCCCCHHHHHHH
Confidence 645699999999764311 1222222 13444443 334467777788
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 375 ARVAKCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 375 lr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
++.|.-.|..+++..|+.+|+.+|+.-++...
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHhhCcc
Confidence 88888888889999999999999998776544
No 18
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=1.5e-19 Score=185.84 Aligned_cols=244 Identities=17% Similarity=0.210 Sum_probs=155.5
Q ss_pred CcccccHHHHHHHHHhhhc--------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 95 AAVVGQDAIKTALLLGAID--------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~--------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
..|+|++.++++|..+... ....+|||+||||||||++|++++..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------------------- 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------------------- 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-------------------
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-------------------
Confidence 3589999999999654432 2357899999999999999999999873
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccc-cccccccchhccccCcccccccchhcc-cCceEEecccccCCH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED-RLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLDE 238 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~-~l~G~ldl~~~l~~g~~~~~~Gll~~A-~~gIL~IDEi~~l~~ 238 (603)
.+|+.+......+ .++|.- ....+. ......+|.+..+ .++|||||||+.+..
T Consensus 76 -----------------------~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 76 -----------------------APFIKVEATKFTEVGYVGKE-VDSIIR-DLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp -----------------------CCEEEEEGGGGSSCCSGGGS-TTHHHH-HHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred -----------------------CCEEEEcchhcccCCccCcc-HHHHHH-HHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 2333332222111 233320 000000 0011124556555 478999999999976
Q ss_pred HH------------HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC---CCCCccHHHHhhhcccccccCCCCHHH
Q 007444 239 GI------------SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDRIAINLSADLPMTFED 303 (603)
Q Consensus 239 ~~------------~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp---~eg~L~~~LldRf~l~v~v~~p~~~e~ 303 (603)
.. ++.|+..++.+.+.. +.| ...+.++++|+++|. ....++++|++||+..|.+. |++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~-~~~~~~ 206 (310)
T 1ofh_A 131 KGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT-ALSAAD 206 (310)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECC-CCCHHH
T ss_pred cccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcC-CcCHHH
Confidence 54 899999999876432 222 223457889999764 34678999999999888887 668888
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC----CCchhHHHHHHHHHH
Q 007444 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----CQGHRAELYAARVAK 379 (603)
Q Consensus 304 r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~----v~s~Ra~i~llr~Ar 379 (603)
+.+|+..... .+...+ ..........+.++++++++|+.++|+.+ ..+.|....+++.+-
T Consensus 207 ~~~il~~~~~------~~~~~~----------~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 207 FERILTEPHA------SLTEQY----------KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHHHSSTT------CHHHHH----------HHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHHHHHhhHH------HHHHHH----------HHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 8888763110 000000 01111222245799999999999999721 124588888887766
Q ss_pred HHHHHcC-----CC-CCcHHHHHHHHHHH
Q 007444 380 CLAALEG-----RE-KVNVDDLKKAVELV 402 (603)
Q Consensus 380 a~Aal~g-----r~-~Vt~eDv~~A~~lv 402 (603)
..+++.. .. .|+.+||.+++...
T Consensus 271 ~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 271 DKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 4444332 21 49999999887643
No 19
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.80 E-value=9.7e-20 Score=194.00 Aligned_cols=246 Identities=20% Similarity=0.217 Sum_probs=144.8
Q ss_pred cccccHHHHHHHHHhhh------------------------------ccCCCcEEEECCCCChHHHHHHHHHHhCCCCee
Q 007444 96 AVVGQDAIKTALLLGAI------------------------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEV 145 (603)
Q Consensus 96 ~IvGq~~~k~aL~laav------------------------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~ 145 (603)
.|+||+.+|++|..+.. .....+|||+||||||||++|++++..+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 48999999999965441 12356899999999999999999999873
Q ss_pred eccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCC-ccccccccccchhccccCcccccccchhccc
Q 007444 146 VVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAH 224 (603)
Q Consensus 146 ~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~ 224 (603)
.+|+.+.... +...++|. +.+..+ .+......|.+..++
T Consensus 98 --------------------------------------~~~~~~~~~~~~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~~ 137 (376)
T 1um8_A 98 --------------------------------------IPIAISDATSLTEAGYVGE-DVENIL-TRLLQASDWNVQKAQ 137 (376)
T ss_dssp --------------------------------------CCEEEEEGGGCC---------CTHHH-HHHHHHTTTCHHHHT
T ss_pred --------------------------------------CCEEEecchhhhhcCcCCc-cHHHHH-HHHHhhccchhhhcC
Confidence 3344433222 11234443 111111 111122346667778
Q ss_pred CceEEecccccCCHH--------------HHHHHHHHHHcCceeEeeCCeeeEecC--------CcEEEEEeCCC-----
Q 007444 225 RGVLYIDEINLLDEG--------------ISNLLLNVLTEGVNIVEREGISFKHPC--------KPLLIATYNPE----- 277 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~--------------~~~~LL~~l~~g~~~v~r~G~s~~~p~--------~~~lIattNp~----- 277 (603)
+||||||||+.+... +++.|+.+|+.+.+.+.+.|.....+. ++++|+++|.+
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~ 217 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHH
Confidence 999999999999887 999999999988766766666554443 45666666621
Q ss_pred -----------------------------------CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 278 -----------------------------------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 278 -----------------------------------eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.+.+.++|++||+..+.+. |.+.++..+|+.....
T Consensus 218 l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~-~l~~~~l~~i~~~~~~--------- 287 (376)
T 1um8_A 218 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLD-SISLEAMVDILQKPKN--------- 287 (376)
T ss_dssp TTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECC-CCCHHHHHHHHHSSTT---------
T ss_pred HHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeecc-CCCHHHHHHHHhhhHH---------
Confidence 1247799999998887776 6677766666541100
Q ss_pred hhhhHhhHHHHHHHH-HHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcC------CCCCcHHHH
Q 007444 323 KMVEEETDLAKTQII-LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG------REKVNVDDL 395 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~-~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~g------r~~Vt~eDv 395 (603)
.+..... ........+.++++++++|++++|..+. +.|...+++..+-..+..+. .-.|+.++|
T Consensus 288 --------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v 358 (376)
T 1um8_A 288 --------ALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 358 (376)
T ss_dssp --------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHH
T ss_pred --------HHHHHHHHHHhhcCceEEECHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHh
Confidence 0000000 1111223467999999999999997332 35777777766555444431 125899999
Q ss_pred HHHHHHHcC
Q 007444 396 KKAVELVIL 404 (603)
Q Consensus 396 ~~A~~lvl~ 404 (603)
..+.+-++.
T Consensus 359 ~~~~~~~~~ 367 (376)
T 1um8_A 359 LKQAEPLII 367 (376)
T ss_dssp TTSSCCEEE
T ss_pred cCCCCceee
Confidence 775544433
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=4.8e-19 Score=178.44 Aligned_cols=219 Identities=18% Similarity=0.209 Sum_probs=149.7
Q ss_pred CCCCCCCCcccccHHHHHHHHHh--hh-cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLG--AI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~la--av-~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
+.++.+|++|+|++.+++.|... .+ .| ...+|||+||||||||++|++++..+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--------------- 69 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--------------- 69 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---------------
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---------------
Confidence 34678999999999999988321 11 11 24679999999999999999999876
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDE 232 (603)
+.+|+.+......+.++|.. ... ...++..+. .+++||||
T Consensus 70 ---------------------------~~~~~~i~~~~~~~~~~~~~---------~~~-~~~~~~~a~~~~~~il~iDe 112 (257)
T 1lv7_A 70 ---------------------------KVPFFTISGSDFVEMFVGVG---------ASR-VRDMFEQAKKAAPCIIFIDE 112 (257)
T ss_dssp ---------------------------TCCEEEECSCSSTTSCCCCC---------HHH-HHHHHHHHHTTCSEEEEETT
T ss_pred ---------------------------CCCEEEEeHHHHHHHhhhhh---------HHH-HHHHHHHHHHcCCeeehhhh
Confidence 34566666555444455431 111 112344332 36999999
Q ss_pred cccCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 233 INLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 233 i~~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
|+.+.. ..++.|+..++.-. .+.++++|+|||. ...+++++++ ||+..+.+.
T Consensus 113 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~~tn~-~~~l~~~l~r~~rf~~~i~i~ 180 (257)
T 1lv7_A 113 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATNR-PDVLDPALLRPGRFDRQVVVG 180 (257)
T ss_dssp HHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSCEEEEEEESC-TTTSCGGGGSTTSSCEEEECC
T ss_pred hhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCCEEEEEeeCC-chhCCHHHcCCCcCCeEEEeC
Confidence 987642 46677777776421 1236789999994 5678888887 999998888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHH
Q 007444 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAA 375 (603)
Q Consensus 297 ~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~ll 375 (603)
. ++.++|.+|++... ....+++++ +..+ ...|. ..+.|....++
T Consensus 181 ~-P~~~~r~~il~~~~-------------------------------~~~~l~~~~~~~~l-a~~~~--G~~~~dl~~l~ 225 (257)
T 1lv7_A 181 L-PDVRGREQILKVHM-------------------------------RRVPLAPDIDAAII-ARGTP--GFSGADLANLV 225 (257)
T ss_dssp C-CCHHHHHHHHHHHH-------------------------------TTSCBCTTCCHHHH-HHTCT--TCCHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHH-------------------------------hcCCCCccccHHHH-HHHcC--CCCHHHHHHHH
Confidence 4 57888888765321 112233222 2222 22333 23568888999
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 376 RVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
+.|...|...+...|+.+|+.+|+..++.+
T Consensus 226 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 226 NEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 999999999999999999999999987643
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=188.33 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=147.3
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhc------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIA 151 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~ 151 (603)
.+..+.+++.|++|+|++.+++.|...... ....+|||+||||||||++|++|+..+
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~----------- 172 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES----------- 172 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----------
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----------
Confidence 344456788999999999999998544421 224789999999999999999999876
Q ss_pred cCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceE
Q 007444 152 NADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVL 228 (603)
Q Consensus 152 n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL 228 (603)
+.+|+.+.+......++|... .....++.. ...+||
T Consensus 173 -------------------------------~~~~~~v~~~~l~~~~~g~~~----------~~~~~~~~~a~~~~~~il 211 (389)
T 3vfd_A 173 -------------------------------NATFFNISAASLTSKYVGEGE----------KLVRALFAVARELQPSII 211 (389)
T ss_dssp -------------------------------TCEEEEECSCCC-------CH----------HHHHHHHHHHHHSSSEEE
T ss_pred -------------------------------cCcEEEeeHHHhhccccchHH----------HHHHHHHHHHHhcCCeEE
Confidence 457777777666566665421 111123332 245899
Q ss_pred EecccccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccC
Q 007444 229 YIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADL 297 (603)
Q Consensus 229 ~IDEi~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~ 297 (603)
|||||+.+ ...+++.|+..++... ...+.+++||+||| ....+++++++||...+.+..
T Consensus 212 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~atn-~~~~l~~~l~~R~~~~i~i~~ 281 (389)
T 3vfd_A 212 FIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVMGATN-RPQELDEAVLRRFIKRVYVSL 281 (389)
T ss_dssp EEETGGGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEEEEES-CGGGCCHHHHTTCCEEEECCC
T ss_pred EEECchhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEEEecC-CchhcCHHHHcCcceEEEcCC
Confidence 99999988 4567788888887432 11234789999999 567889999999998888884
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 298 p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|+..... .....++++.+..|+..+. ..+.+....+++.
T Consensus 282 -p~~~~r~~il~~~~~-----------------------------~~~~~l~~~~~~~la~~~~---g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 282 -PNEETRLLLLKNLLC-----------------------------KQGSPLTQKELAQLARMTD---GYSGSDLTALAKD 328 (389)
T ss_dssp -CCHHHHHHHHHHHHT-----------------------------TSCCCSCHHHHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHH-----------------------------hcCCCCCHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence 588888888763211 0134567776666655542 2234445555555
Q ss_pred HHHHHHHc------------CCCCCcHHHHHHHHHH
Q 007444 378 AKCLAALE------------GREKVNVDDLKKAVEL 401 (603)
Q Consensus 378 Ara~Aal~------------gr~~Vt~eDv~~A~~l 401 (603)
|...+..+ +...|+.+|+..++.-
T Consensus 329 a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 329 AALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 55444433 3457999999998874
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=1.4e-19 Score=184.78 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=151.8
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhc-------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.+.|++|+|++.++..|...... ....+|||+||||||||++|++++..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--------------- 75 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--------------- 75 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---------------
Confidence 4578999999999999988543322 245789999999999999999999886
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDE 232 (603)
+.+|+.+........++|.. + .....++.. ...+||||||
T Consensus 76 ---------------------------~~~~~~v~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~vl~iDE 118 (285)
T 3h4m_A 76 ---------------------------NATFIRVVGSELVKKFIGEG--A--------SLVKDIFKLAKEKAPSIIFIDE 118 (285)
T ss_dssp ---------------------------TCEEEEEEGGGGCCCSTTHH--H--------HHHHHHHHHHHHTCSEEEEEET
T ss_pred ---------------------------CCCEEEEehHHHHHhccchH--H--------HHHHHHHHHHHHcCCeEEEEEC
Confidence 33455544433333344421 0 001112222 2457999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l-----------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.+ +...+..|+.+++... +. ....++++|+||| ....+++++++ ||+..+.+. ++
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vI~ttn-~~~~l~~~l~~~~Rf~~~i~~~-~p 188 (285)
T 3h4m_A 119 IDAIAAKRTDALTGGDREVQRTLMQLLAEMD------GF--DARGDVKIIGATN-RPDILDPAILRPGRFDRIIEVP-AP 188 (285)
T ss_dssp THHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------TT--CSSSSEEEEEECS-CGGGBCHHHHSTTSEEEEEECC-CC
T ss_pred HHHhcccCccccCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEeCC-CchhcCHHHcCCCcCCeEEEEC-CC
Confidence 9997 5566667766665421 00 0123688999999 56778999998 999988998 56
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 300 ~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is-~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
+.++|.+|++.... ...+. +..+..|+.. ....+.|....+++.|
T Consensus 189 ~~~~r~~il~~~~~-------------------------------~~~~~~~~~~~~l~~~---~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 189 DEKGRLEILKIHTR-------------------------------KMNLAEDVNLEEIAKM---TEGCVGAELKAICTEA 234 (285)
T ss_dssp CHHHHHHHHHHHHT-------------------------------TSCBCTTCCHHHHHHH---CTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-------------------------------cCCCCCcCCHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 88888888763211 11111 1123344333 3333678888899999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
...|...++..|+.+|+.+|+..++..+
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987654
No 23
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=1.4e-19 Score=191.84 Aligned_cols=239 Identities=19% Similarity=0.222 Sum_probs=146.4
Q ss_pred ccccHHHHHHHHHhhh---------------ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 97 VVGQDAIKTALLLGAI---------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 97 IvGq~~~k~aL~laav---------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
|+||+.+++.+..+.. .....+|||+||||||||++|++|+..+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~--------------------- 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL--------------------- 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---------------------
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---------------------
Confidence 7999999999865441 1245789999999999999999999987
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcc-ccccccccchhccccCcccccccchhcccCceEEecccccCCHH-
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE-DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG- 239 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~-~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~- 239 (603)
+.+|+.+.++... ..++|.- .. ....+.....++.+..+++||||||||+.++..
T Consensus 76 ---------------------~~~~~~~~~~~l~~~~~~g~~-~~-~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 76 ---------------------DVPFTMADATTLTEAGYVGED-VE-NIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132 (363)
T ss_dssp ---------------------TCCEEEEEHHHHTTCHHHHHH-HT-HHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCS
T ss_pred ---------------------CCCEEEechHHhccccccccc-HH-HHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccc
Confidence 3466665443222 3356641 11 111111122356667778999999999998876
Q ss_pred -------------HHHHHHHHHHcCceeEeeCCeeeE--------ecCCcEEEEEeCCCC---------CC---------
Q 007444 240 -------------ISNLLLNVLTEGVNIVEREGISFK--------HPCKPLLIATYNPEE---------GV--------- 280 (603)
Q Consensus 240 -------------~~~~LL~~l~~g~~~v~r~G~s~~--------~p~~~~lIattNp~e---------g~--------- 280 (603)
+++.||.+|+.....+...|.... ...+.++|+++|.+. +.
T Consensus 133 ~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~ 212 (363)
T 3hws_A 133 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGAT 212 (363)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-------
T ss_pred cccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccc
Confidence 999999999943333333333222 223556666666430 11
Q ss_pred --------------------------ccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHH
Q 007444 281 --------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKT 334 (603)
Q Consensus 281 --------------------------L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~ 334 (603)
|+++|++||+..+.+. |++.+++.+|+...... +..
T Consensus 213 ~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~-pl~~~~~~~I~~~~~~~-----------------l~~ 274 (363)
T 3hws_A 213 VKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLN-ELSEEALIQILKEPKNA-----------------LTK 274 (363)
T ss_dssp -----CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECC-CCCHHHHHHHHHSSTTC-----------------HHH
T ss_pred ccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecC-CCCHHHHHHHHHHHHHH-----------------HHH
Confidence 7999999999987665 78999998887741100 000
Q ss_pred HHH-HHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHc--CCC-----CCcHHHHHHH
Q 007444 335 QII-LAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE--GRE-----KVNVDDLKKA 398 (603)
Q Consensus 335 ~I~-~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~--gr~-----~Vt~eDv~~A 398 (603)
.+. ........+.++++++++|++++|..+. +.|.+.++++.+-..+..+ ..+ .|+.++|++.
T Consensus 275 ~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 275 QYQALFNLEGVDLEFRDEALDAIAKKAMARKT-GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHhhcCCcc-CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCc
Confidence 111 1111223467999999999987665444 4577767666554444333 222 3667776543
No 24
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=4.2e-18 Score=179.96 Aligned_cols=144 Identities=23% Similarity=0.258 Sum_probs=106.5
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC-CCCCccHHHHhhhcccccccCCCCHHH
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIAINLSADLPMTFED 303 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp-~eg~L~~~LldRf~l~v~v~~p~~~e~ 303 (603)
++|||||||+.++...++.|+..+++....+- -......+.+|++++. ....++++|++||.. +.+. |++.++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~-~~~~~e 263 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTT-PYSEKD 263 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEEC-CCCHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCCCcccCCHHHHhhccE-EEec-CCCHHH
Confidence 46999999999999999999999987542110 0000001222222221 246788999999988 5777 668888
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH
Q 007444 304 RVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (603)
Q Consensus 304 r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aa 383 (603)
+.+|+..... ...+.++++++++|+.+++.+ +.|..+.+++.|...|.
T Consensus 264 ~~~il~~~~~-----------------------------~~~~~~~~~~l~~l~~~~~~G---~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 264 TKQILRIRCE-----------------------------EEDVEMSEDAYTVLTRIGLET---SLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHHH-----------------------------HTTCCBCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------------HcCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence 8777664211 124679999999999999874 45999999999999999
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCC
Q 007444 384 LEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 384 l~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
..++..|+.+||.+|+...+..+
T Consensus 312 ~~~~~~It~~~v~~a~~~~~~~~ 334 (368)
T 3uk6_A 312 KRKGTEVQVDDIKRVYSLFLDES 334 (368)
T ss_dssp HTTCSSBCHHHHHHHHHHSBCHH
T ss_pred HhCCCCCCHHHHHHHHHHhcCHH
Confidence 99999999999999999866544
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.78 E-value=2e-18 Score=179.11 Aligned_cols=222 Identities=19% Similarity=0.181 Sum_probs=155.3
Q ss_pred CCCCCCCCcccccHHHHHHHHHhh--h---ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGA--I---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laa--v---~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
+.++.+|++|+|++.++..+.... + .....+|||+||+|||||++|+++++.+.
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--------------------- 63 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--------------------- 63 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---------------------
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---------------------
Confidence 456789999999999888873322 1 12347899999999999999999998763
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCc--cccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~--~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.+|+.+..... ...+++.+ . + ..+++++||||||+.++...
T Consensus 64 ---------------------~~~~~~~~~~~~~~~~l~~~l------~-~---------~~~~~~~l~lDEi~~l~~~~ 106 (324)
T 1hqc_A 64 ---------------------VNLRVTSGPAIEKPGDLAAIL------A-N---------SLEEGDILFIDEIHRLSRQA 106 (324)
T ss_dssp ---------------------CCEEEECTTTCCSHHHHHHHH------T-T---------TCCTTCEEEETTTTSCCHHH
T ss_pred ---------------------CCEEEEeccccCChHHHHHHH------H-H---------hccCCCEEEEECCcccccch
Confidence 23333332221 12222211 0 0 12578999999999999999
Q ss_pred HHHHHHHHHcCceeEeeCC----eeeE-ecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHH
Q 007444 241 SNLLLNVLTEGVNIVEREG----ISFK-HPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G----~s~~-~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~ 315 (603)
++.|+.+++++.+.+--.. .... .+.++++|+++| ..+.++++|++||+..+.+. +++.+++.+++....
T Consensus 107 ~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~-~~~~~~~~l~~R~~~~i~l~-~~~~~e~~~~l~~~~--- 181 (324)
T 1hqc_A 107 EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT-RPGLITAPLLSRFGIVEHLE-YYTPEELAQGVMRDA--- 181 (324)
T ss_dssp HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES-CCSSCSCSTTTTCSCEEECC-CCCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC-CcccCCHHHHhcccEEEecC-CCCHHHHHHHHHHHH---
Confidence 9999999998874331100 0111 224789999999 55788999999998777887 456666555543211
Q ss_pred hhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHH
Q 007444 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv 395 (603)
. ...+.+++++++.|+.++ .+ ..|....+++.+...|...+...|+.+++
T Consensus 182 ------------------------~--~~~~~~~~~~~~~l~~~~-~G---~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 231 (324)
T 1hqc_A 182 ------------------------R--LLGVRITEEAALEIGRRS-RG---TMRVAKRLFRRVRDFAQVAGEEVITRERA 231 (324)
T ss_dssp ------------------------H--TTTCCCCHHHHHHHHHHS-CS---CHHHHHHHHHHHTTTSTTTSCSCCCHHHH
T ss_pred ------------------------H--hcCCCCCHHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 0 113579999999998874 33 35888888888877777778889999999
Q ss_pred HHHHHHH
Q 007444 396 KKAVELV 402 (603)
Q Consensus 396 ~~A~~lv 402 (603)
..++...
T Consensus 232 ~~~~~~~ 238 (324)
T 1hqc_A 232 LEALAAL 238 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.78 E-value=4.6e-19 Score=185.09 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=134.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhc----c--------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAID----R--------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~----p--------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
..+++.|++|+|++.+|+.|...... | ...+|||+||||||||++|++++..+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--------------- 75 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--------------- 75 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---------------
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---------------
Confidence 45678999999999999999554421 1 23579999999999999999999876
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDE 232 (603)
+.+|+.+........++|.. ++. ...++.. ...+||||||
T Consensus 76 ---------------------------~~~~~~v~~~~l~~~~~g~~--~~~--------~~~~f~~a~~~~~~vl~iDE 118 (322)
T 3eie_A 76 ---------------------------NSTFFSVSSSDLVSKWMGES--EKL--------VKQLFAMARENKPSIIFIDQ 118 (322)
T ss_dssp ---------------------------TCEEEEEEHHHHHTTTGGGH--HHH--------HHHHHHHHHHTSSEEEEEEC
T ss_pred ---------------------------CCCEEEEchHHHhhcccchH--HHH--------HHHHHHHHHhcCCeEEEech
Confidence 45666665544444455531 111 1122332 2458999999
Q ss_pred cccCCH-----------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCH
Q 007444 233 INLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 233 i~~l~~-----------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~ 301 (603)
|+.+.. .+++.|+..|+.-.. ...+++||+||| ....|+++|++||+..+.+.. ++.
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vi~atn-~~~~ld~al~~Rf~~~i~~~~-p~~ 186 (322)
T 3eie_A 119 VDALTGTRGEGESEASRRIKTELLVQMNGVGN----------DSQGVLVLGATN-IPWQLDSAIRRRFERRIYIPL-PDL 186 (322)
T ss_dssp GGGGSCC------CCTHHHHHHHHHHHGGGGT----------SCCCEEEEEEES-CGGGSCHHHHHHCCEEEECCC-CCH
T ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhccccc----------cCCceEEEEecC-ChhhCCHHHHcccCeEEEeCC-CCH
Confidence 998853 567888888874321 123678999999 667799999999999988984 588
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
++|.+|++.... .....+++..+..|+..+. ..+.+....+++.|...
T Consensus 187 ~~r~~il~~~~~-----------------------------~~~~~~~~~~l~~la~~t~---g~sg~di~~l~~~a~~~ 234 (322)
T 3eie_A 187 AARTTMFEINVG-----------------------------DTPCVLTKEDYRTLGAMTE---GYSGSDIAVVVKDALMQ 234 (322)
T ss_dssp HHHHHHHHHHHT-----------------------------TCCCCCCHHHHHHHHHTTT---TCCHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhc-----------------------------cCCCCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 989888764211 1123466776666655543 23455555666555444
Q ss_pred H
Q 007444 382 A 382 (603)
Q Consensus 382 A 382 (603)
|
T Consensus 235 a 235 (322)
T 3eie_A 235 P 235 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.77 E-value=2.5e-18 Score=182.20 Aligned_cols=202 Identities=18% Similarity=0.169 Sum_probs=133.5
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
...+++.|++|+|++.+++.|..+...| ...+|||+||||||||++|++++..+
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-------------- 108 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-------------- 108 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--------------
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--------------
Confidence 3456789999999999999996544221 23579999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+........++|.. + .....++..+ ..+|||||
T Consensus 109 ----------------------------~~~~~~v~~~~l~~~~~g~~--~--------~~~~~~f~~a~~~~~~vl~iD 150 (355)
T 2qp9_X 109 ----------------------------NSTFFSVSSSDLVSKWMGES--E--------KLVKQLFAMARENKPSIIFID 150 (355)
T ss_dssp ----------------------------TCEEEEEEHHHHHSCC---C--H--------HHHHHHHHHHHHTSSEEEEEE
T ss_pred ----------------------------CCCEEEeeHHHHhhhhcchH--H--------HHHHHHHHHHHHcCCeEEEEe
Confidence 34555554333333344431 1 1111233333 56899999
Q ss_pred ccccCCH-----------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCC
Q 007444 232 EINLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (603)
Q Consensus 232 Ei~~l~~-----------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~ 300 (603)
||+.+.. .+++.|+..|+.-.. .+.+++||+||| .+..++++|++||+..+.+.. ++
T Consensus 151 Eid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~ 218 (355)
T 2qp9_X 151 QVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------DSQGVLVLGATN-IPWQLDSAIRRRFERRIYIPL-PD 218 (355)
T ss_dssp CGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEES-CGGGSCHHHHHTCCEEEECCC-CC
T ss_pred chHhhcccCCCCcchHHHHHHHHHHHHhhcccc----------cCCCeEEEeecC-CcccCCHHHHcccCEEEEeCC-cC
Confidence 9999863 467888888874320 123688999999 567889999999999989984 58
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 007444 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (603)
Q Consensus 301 ~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara 380 (603)
.++|.+|+..... .....+++..+..|+..+. ..+.|....+++.|..
T Consensus 219 ~~~r~~il~~~l~-----------------------------~~~~~~~~~~l~~la~~t~---G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 219 LAARTTMFEINVG-----------------------------DTPSVLTKEDYRTLGAMTE---GYSGSDIAVVVKDALM 266 (355)
T ss_dssp HHHHHHHHHHHHT-----------------------------TSCBCCCHHHHHHHHHHTT---TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------------------------hCCCCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 8888888764211 0123467777777776653 2355666677766665
Q ss_pred HHHH
Q 007444 381 LAAL 384 (603)
Q Consensus 381 ~Aal 384 (603)
.|..
T Consensus 267 ~a~~ 270 (355)
T 2qp9_X 267 QPIR 270 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=174.75 Aligned_cols=220 Identities=20% Similarity=0.180 Sum_probs=134.3
Q ss_pred CCCCCcccccHHHHHHHHH--hhh-c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC
Q 007444 91 FFPLAAVVGQDAIKTALLL--GAI-D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l--aav-~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~ 158 (603)
...|++|+|++.+|..|.- ..+ . +...+|||+||||||||++|++++..+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------------------ 63 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------------------ 63 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------------------
Confidence 4789999999999998832 111 1 234679999999999999999999876
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEeccccc
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~~ 235 (603)
..+|+.+......+.+.|.. . ....+++..+ .++||||||++.
T Consensus 64 ------------------------~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 64 ------------------------QVPFLAMAGAEFVEVIGGLG---------A-ARVRSLFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp ------------------------TCCEEEEETTTTSSSSTTHH---------H-HHHHHHHHHHHHTCSEEEEEECC--
T ss_pred ------------------------CCCEEEechHHHHhhccChh---------H-HHHHHHHHHHHhcCCeEEEEeCcch
Confidence 34555555444333333320 0 0111334333 267999999999
Q ss_pred CC------------HH---HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 236 LD------------EG---ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 236 l~------------~~---~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
+. .. .++.|+..++... .+.++++|+|+| ....+++++++ ||+..+.+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------~~~~~~vi~~tn-~~~~ld~~l~~~~R~~~~i~i~~- 176 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------TTDHVIVLASTN-RADILDGALMRPGRLDRHVFIDL- 176 (262)
T ss_dssp -----------------CHHHHHHHHHHHTCC-----------TTCCEEEEEEES-CGGGGGSGGGSTTSCCEEEECCS-
T ss_pred hhccccccccCccchhHHHHHHHHHHHhhCcC-----------CCCCEEEEecCC-ChhhcCHHHhcCCcCCeEEEeCC-
Confidence 83 22 3445555554321 123678999999 56678889998 9999989884
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|++....- . ....+.+. ...+ +......+.|....+++.
T Consensus 177 p~~~~r~~il~~~~~~---------------------------~--~~~~~~~~~~~~l---~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 177 PTLQERREIFEQHLKS---------------------------L--KLTQSSTFYSQRL---AELTPGFSGADIANICNE 224 (262)
T ss_dssp CCHHHHHHHHHHHHHH---------------------------T--TCCBTHHHHHHHH---HHTCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh---------------------------C--CCCcchhhHHHHH---HHHCCCCCHHHHHHHHHH
Confidence 5888888887643211 0 12233332 2333 333333356777788888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCc
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (603)
|...|..++...|+.+|+..|+.-+...+.
T Consensus 225 a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 225 AALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 888888888899999999999998876543
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=1.5e-17 Score=170.88 Aligned_cols=219 Identities=18% Similarity=0.178 Sum_probs=143.1
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhc------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
+.++..|++|+|++.+++.|...... ....+|||+||||||||++|++++..+
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--------------- 78 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--------------- 78 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---------------
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---------------
Confidence 34678999999999999998543322 135789999999999999999999986
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccch---hcccCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL---AEAHRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll---~~A~~gIL~IDE 232 (603)
..+|+.+........++|.. . .....++ .....+||||||
T Consensus 79 ---------------------------~~~~~~i~~~~l~~~~~~~~---------~-~~~~~~~~~~~~~~~~vl~iDE 121 (297)
T 3b9p_A 79 ---------------------------SATFLNISAASLTSKYVGDG---------E-KLVRALFAVARHMQPSIIFIDE 121 (297)
T ss_dssp ---------------------------TCEEEEEESTTTSSSSCSCH---------H-HHHHHHHHHHHHTCSEEEEEET
T ss_pred ---------------------------CCCeEEeeHHHHhhcccchH---------H-HHHHHHHHHHHHcCCcEEEecc
Confidence 34555555444334444421 0 0011122 233568999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCH
Q 007444 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 233 i~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~ 301 (603)
++.+. ..+++.|+..++..... . ...++++|++|| ....+++++++||...+.+.. ++.
T Consensus 122 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~------~~~~v~vi~~tn-~~~~l~~~l~~R~~~~i~~~~-p~~ 191 (297)
T 3b9p_A 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--P------DGDRIVVLAATN-RPQELDEAALRRFTKRVYVSL-PDE 191 (297)
T ss_dssp GGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEES-CGGGBCHHHHHHCCEEEECCC-CCH
T ss_pred HHHhccccccCcchHHHHHHHHHHHHHhccccc--C------CCCcEEEEeecC-ChhhCCHHHHhhCCeEEEeCC-cCH
Confidence 98873 46777888888754311 0 112578999999 667899999999998888884 578
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
+.|.+|+...... ....++++.+..|+..+. ..+.+....+++.|...
T Consensus 192 ~~r~~il~~~~~~-----------------------------~~~~~~~~~~~~la~~~~---g~~~~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 192 QTRELLLNRLLQK-----------------------------QGSPLDTEALRRLAKITD---GYSGSDLTALAKDAALE 239 (297)
T ss_dssp HHHHHHHHHHHGG-----------------------------GSCCSCHHHHHHHHHHTT---TCCHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHh-----------------------------cCCCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 8888876542110 123467777776666542 22334444566655544
Q ss_pred HHHcC------------CCCCcHHHHHHHHH
Q 007444 382 AALEG------------REKVNVDDLKKAVE 400 (603)
Q Consensus 382 Aal~g------------r~~Vt~eDv~~A~~ 400 (603)
|..+. ...|+.+|+..|+.
T Consensus 240 a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 240 PIRELNVEQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp HHHTCC--------CCCCCCCCHHHHHHHTT
T ss_pred HHHHHhhhhcccccccccCCcCHHHHHHHHH
Confidence 44332 35799999988765
No 30
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.76 E-value=1.3e-19 Score=183.56 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=145.8
Q ss_pred CCCCCCCcccccHHHHHHHHHhhh---c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAI---D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav---~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
.+.+.|++|+|++.++..|..... . ....+|||+||||||||++|++++..+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--------------- 69 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--------------- 69 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------------
Confidence 457889999999999888843211 1 1246799999999999999999998762
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi 233 (603)
.+|+.+......+.+.|. +.. ...+++..+. .+||||||+
T Consensus 70 ---------------------------~~~~~v~~~~~~~~~~~~---------~~~-~~~~~~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 70 ---------------------------VPFFSMGGSSFIEMFVGL---------GAS-RVRDLFETAKKQAPSIIFIDEI 112 (268)
T ss_dssp ---------------------------CCCCCCCSCTTTTSCSSS---------CSS-SSSTTHHHHHHSCSCEEEESCG
T ss_pred ---------------------------CCEEEechHHHHHhhcch---------HHH-HHHHHHHHHHhcCCeEEEEeCh
Confidence 344444444434444442 111 1224554443 489999999
Q ss_pred ccCCHH---------------HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 234 NLLDEG---------------ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 234 ~~l~~~---------------~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
+.+... .++.|+..++... ....++++|+|+| ....+++++++ ||+..+.+.
T Consensus 113 d~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn-~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------SENAPVIVLAATN-RPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp GGTTC----------CCCSCSSTTTTTTTTTCSS----------CSCSCCEEEECBS-CCTTSCGGGGSSSSSCCCCBCC
T ss_pred hhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------cCCCCEEEEEecC-CchhcCHhHcCCCCCCeEEEec
Confidence 998653 3455555554311 0123588999999 44668899998 999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCH-HHHHHHHHHHHcCCCCchhHHHHHH
Q 007444 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAA 375 (603)
Q Consensus 297 ~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~-~~l~~L~~~a~~~~v~s~Ra~i~ll 375 (603)
. ++.++|.+|++... ....+.+ ..+..|+.. ....+.|....++
T Consensus 182 ~-p~~~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la~~---~~g~~g~dl~~l~ 226 (268)
T 2r62_A 182 K-PDFNGRVEILKVHI-------------------------------KGVKLANDVNLQEVAKL---TAGLAGADLANII 226 (268)
T ss_dssp C-CCTTTHHHHHHHHT-------------------------------SSSCCCSSCCTTTTTSS---SCSSCHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHH-------------------------------hcCCCCCccCHHHHHHH---cCCCCHHHHHHHH
Confidence 5 57788888865321 1111111 112233222 2223457777888
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCccC
Q 007444 376 RVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (603)
Q Consensus 376 r~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (603)
+.|...|...+...|+.+|+.+|+..+.+++.++
T Consensus 227 ~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 227 NEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp HHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC--
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHhhcchhh
Confidence 8888888777888999999999999888887653
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=1e-17 Score=183.27 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=106.6
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC------------CCCCccHHHHhhhcccc
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------------EEGVVREHLLDRIAINL 293 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------------~eg~L~~~LldRf~l~v 293 (603)
+|+||||++.|+.+.++.|+..|++.. .++++++| |+ .+..+.+.+++||...
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-------------CCEEEEec-CCccccccccccccccccCChhHHhhccee-
Confidence 799999999999999999999999764 23334454 43 2567899999999985
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
.+. |++.++..+++..+... ..+.++++++.+++.++..+ ++|..+.
T Consensus 362 ~~~-~~~~~e~~~iL~~~~~~-----------------------------~~~~~~~~~~~~i~~~a~~g---~~r~a~~ 408 (456)
T 2c9o_A 362 RTM-LYTPQEMKQIIKIRAQT-----------------------------EGINISEEALNHLGEIGTKT---TLRYSVQ 408 (456)
T ss_dssp ECC-CCCHHHHHHHHHHHHHH-----------------------------HTCCBCHHHHHHHHHHHHHS---CHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHHHHH-----------------------------hCCCCCHHHHHHHHHHccCC---CHHHHHH
Confidence 776 77888888887654221 13679999999999988443 6899999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
+++.|..+|.++|+..|+.+||.+|+.+++-
T Consensus 409 ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 409 LLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp THHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 9999999999999999999999999998764
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.4e-18 Score=179.28 Aligned_cols=213 Identities=18% Similarity=0.177 Sum_probs=148.1
Q ss_pred cccccHHHHHHHHHhh--h-------------ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 96 AVVGQDAIKTALLLGA--I-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 96 ~IvGq~~~k~aL~laa--v-------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
+|+|++.+|..|.-.. . .+...+|||+||||||||++|+++++.+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~--------------- 96 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY--------------- 96 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---------------
Confidence 6999999999884211 1 234557999999999999999999988631000
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccC----
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l---- 236 (603)
....+|+.+........++|.. .....+++..++++||||||++.+
T Consensus 97 --------------------~~~~~~~~~~~~~l~~~~~g~~----------~~~~~~~~~~~~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 97 --------------------VRKGHLVSVTRDDLVGQYIGHT----------APKTKEVLKRAMGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp --------------------SSSCCEEEECGGGTCCSSTTCH----------HHHHHHHHHHHTTSEEEEETGGGSCCCC
T ss_pred --------------------cCCCcEEEEcHHHhhhhccccc----------HHHHHHHHHhcCCCEEEEEChhhhccCC
Confidence 0145777777666666666642 112246677788899999999988
Q ss_pred -----CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 237 -----~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
+...++.|+..|+++. .++++|+++|+... .++++|.+||+..|.+. |++.+++.+|
T Consensus 147 ~~~~~~~~~~~~Ll~~l~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~~~~~~~~~i 212 (309)
T 3syl_A 147 NERDYGQEAIEILLQVMENNR-------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP-DYSDEELFEI 212 (309)
T ss_dssp ---CCTHHHHHHHHHHHHHCT-------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC-CCCHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhcCC-------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC-CcCHHHHHHH
Confidence 8899999999999763 36789999986432 24689999999998998 6688888888
Q ss_pred HHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHHHHH
Q 007444 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----GGCQGHRAELYAARVAKCLAA 383 (603)
Q Consensus 308 ~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~----~~v~s~Ra~i~llr~Ara~Aa 383 (603)
+.....- ..+.++++++..+..++.. ......|....+++.|...+.
T Consensus 213 l~~~l~~-----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 213 AGHMLDD-----------------------------QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HHHHHHH-----------------------------TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------------------cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 6643210 1357899999999887431 111236888888776665433
Q ss_pred Hc----CCCCCcHHHHH
Q 007444 384 LE----GREKVNVDDLK 396 (603)
Q Consensus 384 l~----gr~~Vt~eDv~ 396 (603)
.. +...++.+|+.
T Consensus 264 ~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 264 NRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHC---CEEHHHHH
T ss_pred HHHHhccCCCCCHHHHh
Confidence 22 44567777765
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.2e-17 Score=171.41 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=113.9
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhcc------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
.+...|++|+|++.+|+.|.-....| ...+|||+||||||||++|++++..+.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------------- 70 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------------- 70 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---------------
Confidence 45789999999999999985433211 236799999999999999999999873
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh---cccCceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~---~A~~gIL~IDEi 233 (603)
..+|+.+........++|.. ++.+ ..++. ....+|||||||
T Consensus 71 --------------------------~~~~~~i~~~~l~~~~~g~~--~~~~--------~~lf~~a~~~~~~vl~iDEi 114 (322)
T 1xwi_A 71 --------------------------NSTFFSISSSDLVSKWLGES--EKLV--------KNLFQLARENKPSIIFIDEI 114 (322)
T ss_dssp --------------------------SCEEEEEECCSSCCSSCCSC--HHHH--------HHHHHHHHHTSSEEEEEETT
T ss_pred --------------------------CCcEEEEEhHHHHhhhhhHH--HHHH--------HHHHHHHHhcCCcEEEeecH
Confidence 34566655554445555531 1111 11222 234679999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHH
Q 007444 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFE 302 (603)
Q Consensus 234 ~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e 302 (603)
+.+. ..+++.|+..|+.-.. .+.+++||+||| .+..++++|++||+..+.+.. ++.+
T Consensus 115 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P~~~ 182 (322)
T 1xwi_A 115 DSLCGSRSENESEAARRIKTEFLVQMQGVGV----------DNDGILVLGATN-IPWVLDSAIRRRFEKRIYIPL-PEPH 182 (322)
T ss_dssp TGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----------CCTTEEEEEEES-CTTTSCHHHHHTCCEEEECCC-CCHH
T ss_pred HHhccccccccchHHHHHHHHHHHHHhcccc----------cCCCEEEEEecC-CcccCCHHHHhhcCeEEEeCC-cCHH
Confidence 9882 3567788888874320 123689999999 567899999999999989985 5888
Q ss_pred HHHHHHHH
Q 007444 303 DRVAAVGI 310 (603)
Q Consensus 303 ~r~eI~~~ 310 (603)
.|.+|++.
T Consensus 183 ~r~~il~~ 190 (322)
T 1xwi_A 183 ARAAMFKL 190 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=177.18 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=113.6
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhh------------ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAI------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
.+.++..|++|+|++.+++.|..... .....+|||+||||||||++|++++..+
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-------------- 141 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-------------- 141 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--------------
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--------------
Confidence 34578899999999999999854332 2235789999999999999999999886
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~ID 231 (603)
+.+|+.+........++|.. +. ....++.. ...+|||||
T Consensus 142 ----------------------------~~~~~~i~~~~l~~~~~g~~--~~--------~~~~~~~~a~~~~~~vl~iD 183 (357)
T 3d8b_A 142 ----------------------------GATFFSISASSLTSKWVGEG--EK--------MVRALFAVARCQQPAVIFID 183 (357)
T ss_dssp ----------------------------TCEEEEEEGGGGCCSSTTHH--HH--------HHHHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------CCeEEEEehHHhhccccchH--HH--------HHHHHHHHHHhcCCeEEEEe
Confidence 34566555544444444431 00 01122322 346899999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCC
Q 007444 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (603)
Q Consensus 232 Ei~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~ 300 (603)
||+.+. ..+++.|+..++... ...+.+++||+||| ....+++++++||...+.+.. ++
T Consensus 184 Eid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~vI~atn-~~~~l~~~l~~Rf~~~i~i~~-p~ 252 (357)
T 3d8b_A 184 EIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILVVGATN-RPQEIDEAARRRLVKRLYIPL-PE 252 (357)
T ss_dssp THHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEES-CGGGBCHHHHTTCCEEEECCC-CC
T ss_pred CchhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEEEEecC-ChhhCCHHHHhhCceEEEeCC-cC
Confidence 998873 256778888887432 11234789999999 567889999999998888885 57
Q ss_pred HHHHHHHHHHH
Q 007444 301 FEDRVAAVGIA 311 (603)
Q Consensus 301 ~e~r~eI~~~~ 311 (603)
.++|.+|+...
T Consensus 253 ~~~r~~il~~~ 263 (357)
T 3d8b_A 253 ASARKQIVINL 263 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887643
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=2.7e-18 Score=187.24 Aligned_cols=221 Identities=17% Similarity=0.228 Sum_probs=145.3
Q ss_pred ccccCCCCCCCCcccccHHHH---HHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIK---TALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k---~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
+...+.++.+|++|+||++++ ..|..........+|||+||||||||++|++|++.+.
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~------------------- 75 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN------------------- 75 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT-------------------
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC-------------------
Confidence 455567889999999999998 5564433333446899999999999999999999873
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
.+|+.+..... |.-++...+ +... .....++++|||||||+.++...
T Consensus 76 -----------------------~~f~~l~a~~~-----~~~~ir~~~-~~a~----~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 76 -----------------------ADVERISAVTS-----GVKEIREAI-ERAR----QNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp -----------------------CEEEEEETTTC-----CHHHHHHHH-HHHH----HHHHTTCCEEEEEETTTCC----
T ss_pred -----------------------CCeEEEEeccC-----CHHHHHHHH-HHHH----HhhhcCCCcEEEEeChhhhCHHH
Confidence 34544432211 111111111 0000 01123467899999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-CCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
++.|+..++++. +++|++|+.. ...+.++|++||... .+. |++.+++.+++.....-.
T Consensus 123 q~~LL~~le~~~---------------v~lI~att~n~~~~l~~aL~sR~~v~-~l~-~l~~edi~~il~~~l~~~---- 181 (447)
T 3pvs_A 123 QDAFLPHIEDGT---------------ITFIGATTENPSFELNSALLSRARVY-LLK-SLSTEDIEQVLTQAMEDK---- 181 (447)
T ss_dssp --CCHHHHHTTS---------------CEEEEEESSCGGGSSCHHHHTTEEEE-ECC-CCCHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHhcCc---------------eEEEecCCCCcccccCHHHhCceeEE-eeC-CcCHHHHHHHHHHHHHHH----
Confidence 999999999865 4567766533 357899999999855 566 567777766665432110
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHc--CCCCCcHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE--GREKVNVDDLK 396 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~--gr~~Vt~eDv~ 396 (603)
.+.. ...+.+++++++.|+.+ |.++ .|..+++++.+...+... |...||.+||.
T Consensus 182 -------------------~~~~~~~~~~i~~~al~~L~~~-~~Gd---~R~lln~Le~a~~~a~~~~~~~~~It~e~v~ 238 (447)
T 3pvs_A 182 -------------------TRGYGGQDIVLPDETRRAIAEL-VNGD---ARRALNTLEMMADMAEVDDSGKRVLKPELLT 238 (447)
T ss_dssp -------------------TTSSTTSSEECCHHHHHHHHHH-HCSC---HHHHHHHHHHHHHHSCBCTTSCEECCHHHHH
T ss_pred -------------------hhhhccccCcCCHHHHHHHHHH-CCCC---HHHHHHHHHHHHHhcccccCCCCccCHHHHH
Confidence 0000 13467999999999998 5554 599999998877665433 55689999999
Q ss_pred HHHH
Q 007444 397 KAVE 400 (603)
Q Consensus 397 ~A~~ 400 (603)
+++.
T Consensus 239 ~~l~ 242 (447)
T 3pvs_A 239 EIAG 242 (447)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8865
No 36
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.75 E-value=6.5e-18 Score=174.16 Aligned_cols=214 Identities=21% Similarity=0.237 Sum_probs=137.0
Q ss_pred CcccccHHHHHHHHHhhhc-------c--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAID-------R--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav~-------p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+|++.++..+..+... | ..+++||+||||||||++|++++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---------------------- 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---------------------- 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----------------------
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----------------------
Confidence 3589999998888433221 1 13579999999999999999999987421
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CccccccccccchhccccCcc--cccccchhcccCceEEecccccCCH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTT--VFQPGLLAEAHRGVLYIDEINLLDE 238 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~~~~l~G~ldl~~~l~~g~~--~~~~Gll~~A~~gIL~IDEi~~l~~ 238 (603)
..+|+.+.++ .....++|...- ..|.. ..-.+.+..+.++|||||||+.++.
T Consensus 75 -----------------~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 75 -----------------EEAMIRIDMTEYMEKHAVSRLIGAPPG----YVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP 133 (311)
T ss_dssp -----------------GGGEEEEEGGGCCSTTHHHHHHCCCTT----STTTTTCCHHHHHHHHCSSEEEEEETGGGSCH
T ss_pred -----------------CcceEEeecccccccccHHHhcCCCCc----cccccccchHHHHHHhCCCeEEEEeChhhcCH
Confidence 2233332222 123344543210 00100 0111233445678999999999999
Q ss_pred HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCC-------------------------CCCccHHHHhhhcccc
Q 007444 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-------------------------EGVVREHLLDRIAINL 293 (603)
Q Consensus 239 ~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~-------------------------eg~L~~~LldRf~l~v 293 (603)
.+++.|+.+|+++.+.. ..|..... .++++|+|+|.. .+.++++|++||+..+
T Consensus 134 ~~~~~Ll~~le~~~~~~-~~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~ 211 (311)
T 4fcw_A 134 DVFNILLQMLDDGRLTD-SHGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV 211 (311)
T ss_dssp HHHHHHHHHHHHSEEEC-TTSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEE
T ss_pred HHHHHHHHHHhcCEEEc-CCCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEE
Confidence 99999999999987542 12333332 256799999972 4578899999998887
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH--cCCCCchhHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHRAE 371 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~--~~~v~s~Ra~ 371 (603)
.+. |++.+++.+|+...... +... .......+.++++++++|+.++| ++|+ |..
T Consensus 212 ~~~-p~~~~~~~~i~~~~l~~-----------------~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~gn~---R~L 267 (311)
T 4fcw_A 212 VFR-PLTKEQIRQIVEIQMSY-----------------LRAR---LAEKRISLELTEAAKDFLAERGYDPVFGA---RPL 267 (311)
T ss_dssp ECC-CCCHHHHHHHHHHHTHH-----------------HHHH---HHTTTCEEEECHHHHHHHHHHSCBTTTBT---TTH
T ss_pred EeC-CCCHHHHHHHHHHHHHH-----------------HHHH---HHhCCcEEEeCHHHHHHHHHhCCCccCCc---hhH
Confidence 776 67877777776643211 0000 11112246799999999999999 5665 555
Q ss_pred HHHHHH
Q 007444 372 LYAARV 377 (603)
Q Consensus 372 i~llr~ 377 (603)
.++++.
T Consensus 268 ~~~i~~ 273 (311)
T 4fcw_A 268 RRVIQR 273 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 37
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.74 E-value=1.4e-17 Score=182.37 Aligned_cols=216 Identities=24% Similarity=0.287 Sum_probs=151.0
Q ss_pred CCCCCCcccccHHHHHHHHHh--h-hcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLG--A-IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~la--a-v~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
..++|++|+|++++|..|.-. . .+| ...||||+||||||||++|++++..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------------- 73 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------------- 73 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----------------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 457899999999999888321 1 111 23679999999999999999999875
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi~ 234 (603)
+.+|+.+......+.++|. |.. ...++|..|. .+|||||||+
T Consensus 74 -------------------------~~~f~~is~~~~~~~~~g~---------~~~-~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 74 -------------------------NVPFFHISGSDFVELFVGV---------GAA-RVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp -------------------------TCCEEEEEGGGTTTCCTTH---------HHH-HHHHHHHHHHHTCSEEEEEETGG
T ss_pred -------------------------CCCeeeCCHHHHHHHHhcc---------cHH-HHHHHHHHHHhcCCCEEEEechh
Confidence 4567776655555555553 111 1234566553 4699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 235 ~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
.+.. .+++.|+..|+.-. .+.+++||++|| ....+++++++ ||+..|.+. +
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTn-~~~~Ld~allR~gRFd~~i~i~-~ 185 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGIIVMAATN-RPDILDPALLRPGRFDKKIVVD-P 185 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTEEEEEEES-CGGGSCGGGGSTTSSCEEEECC-C
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCEEEEEecC-ChhhhchhhcccCcceeEeecC-C
Confidence 8743 46788888887321 123678999999 46678889887 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|++.... ...+.+++ +..|+. .|+++ +.|...++++.
T Consensus 186 Pd~~~R~~Il~~~~~-------------------------------~~~l~~~v~l~~la~-~t~G~--sgadL~~lv~~ 231 (476)
T 2ce7_A 186 PDMLGRKKILEIHTR-------------------------------NKPLAEDVNLEIIAK-RTPGF--VGADLENLVNE 231 (476)
T ss_dssp CCHHHHHHHHHHHHT-------------------------------TSCBCTTCCHHHHHH-TCTTC--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-------------------------------hCCCcchhhHHHHHH-hcCCC--cHHHHHHHHHH
Confidence 588888888753211 11222221 333322 23333 45778888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
|..+|...+...|+.+|+.+|+..++.
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 888888889899999999999998875
No 38
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.73 E-value=1.4e-17 Score=183.27 Aligned_cols=219 Identities=21% Similarity=0.229 Sum_probs=149.6
Q ss_pred CCCCCCcccccHHHHHHHHHh---hhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLG---AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~la---av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
+.++|++|+|++++|..+.-. ..+| -..||||+||||||||+|+++|+..+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------------- 88 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------------- 88 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-----------------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----------------
Confidence 578999999999999988321 1122 13569999999999999999999986
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhccc---CceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~---~gIL~IDEi~ 234 (603)
..+|+.+......+.++|.. .. ....++..+. .+|+|||||+
T Consensus 89 -------------------------~~~~i~i~g~~~~~~~~g~~---------~~-~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 89 -------------------------RVPFITASGSDFVEMFVGVG---------AA-RVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp -------------------------TCCEEEEEGGGGTSSCTTHH---------HH-HHHHHTTTSSSSSSCEEEEECGG
T ss_pred -------------------------CCCEEEEehhHHHHhhhhhH---------HH-HHHHHHHHHHhcCCCEEEEehHH
Confidence 34566655443334444421 00 0112334443 4799999998
Q ss_pred cCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 235 ~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
.+.. ..++.|+..|+.+. ....+++|+++| .+..|+++|++ ||+..|.++.
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn-~p~~LD~aLlr~gRfdr~i~i~~- 200 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA- 200 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCS-CGGGSCTTTSSTTSSCCEEECCC-
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecC-ChhhcCcccccccccceEEecCC-
Confidence 8742 45677777776543 122578999999 45568999987 8999999985
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
++.++|.+|++.. ...+.+++++...+....|.++ +.|...++++.|
T Consensus 201 Pd~~~R~~IL~~~-------------------------------~~~~~l~~dv~l~~lA~~t~G~--~gadL~~lv~~A 247 (499)
T 2dhr_A 201 PDVKGREQILRIH-------------------------------ARGKPLAEDVDLALLAKRTPGF--VGADLENLLNEA 247 (499)
T ss_dssp CCHHHHHHHHHHT-------------------------------TSSSCCCCSSTTHHHHTTSCSC--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-------------------------------HhcCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 5888888886521 1123444443222233345544 357888888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCC
Q 007444 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (603)
Q Consensus 379 ra~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (603)
..+|...+...|+.+|+.+|+..++...
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCS
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhccc
Confidence 8888888888999999999999988753
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=173.20 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=113.9
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhc-------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~-------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.+.|++|+|++.+++.|.-.... +...+|||+||||||||++|++++..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--------------- 73 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--------------- 73 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---------------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---------------
Confidence 4678999999999999988543322 235679999999999999999999986
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
..+|+.+........++|.. .....+++..+ ..+||||||
T Consensus 74 ---------------------------~~~~i~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~p~il~iDE 116 (301)
T 3cf0_A 74 ---------------------------QANFISIKGPELLTMWFGES----------EANVREIFDKARQAAPCVLFFDE 116 (301)
T ss_dssp ---------------------------TCEEEEECHHHHHHHHHTTC----------TTHHHHHHHHHHHTCSEEEEECS
T ss_pred ---------------------------CCCEEEEEhHHHHhhhcCch----------HHHHHHHHHHHHhcCCeEEEEEC
Confidence 34566655443334455531 11112445444 347999999
Q ss_pred cccCCH--------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhccccccc
Q 007444 233 INLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (603)
Q Consensus 233 i~~l~~--------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~ 296 (603)
|+.+.. .+++.||..|+.-. ...+++||+||| ....+++++++ ||+..+.+.
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn-~~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEES-CGGGSCGGGGSTTSSCEEEECC
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecC-CccccChHHhcCCccceEEecC
Confidence 997643 35788999887421 123689999999 56678899998 999998998
Q ss_pred CCCCHHHHHHHHHHH
Q 007444 297 LPMTFEDRVAAVGIA 311 (603)
Q Consensus 297 ~p~~~e~r~eI~~~~ 311 (603)
. ++.++|.+|++..
T Consensus 185 ~-p~~~~r~~il~~~ 198 (301)
T 3cf0_A 185 L-PDEKSRVAILKAN 198 (301)
T ss_dssp C-CCHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHH
Confidence 4 5888898887643
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.72 E-value=9.2e-17 Score=175.12 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=111.0
Q ss_pred ccCCCCCCCCcccccHHHHHHHHHhhhc------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccC
Q 007444 86 SYGRQFFPLAAVVGQDAIKTALLLGAID------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (603)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~laav~------------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~ 153 (603)
....+++.|++|+|++.++..|...... ....+|||+||||||||++|++++..+.
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------------ 192 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------------ 192 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------------
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------------
Confidence 3445788999999999999999654321 1246899999999999999999999873
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh---cccCceEEe
Q 007444 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYI 230 (603)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~---~A~~gIL~I 230 (603)
..+|+.+........++|.. . .....++. ....+||||
T Consensus 193 -----------------------------~~~~~~v~~~~l~~~~~g~~---------~-~~~~~~f~~a~~~~~~vl~i 233 (444)
T 2zan_A 193 -----------------------------NSTFFSISSSDLVSKWLGES---------E-KLVKNLFQLARENKPSIIFI 233 (444)
T ss_dssp -----------------------------SSEEEEECCC---------C---------C-CTHHHHHHHHHHSCSEEEEE
T ss_pred -----------------------------CCCEEEEeHHHHHhhhcchH---------H-HHHHHHHHHHHHcCCeEEEE
Confidence 34566666555445555531 0 01112222 234689999
Q ss_pred cccccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCC
Q 007444 231 DEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPM 299 (603)
Q Consensus 231 DEi~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~ 299 (603)
|||+.+. ..+++.||..|+.-.. .+.+++||+||| .+..++++|++||+..+.++. +
T Consensus 234 DEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~----------~~~~v~vI~atn-~~~~ld~al~rRf~~~i~i~~-P 301 (444)
T 2zan_A 234 DEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----------DNDGILVLGATN-IPWVLDSAIRRRFEKRIYIPL-P 301 (444)
T ss_dssp SCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC----------CCSSCEEEEEES-CGGGSCHHHHTTCCEEEECCC-C
T ss_pred echHhhccCCCCccccHHHHHHHHHHHHHhCccc----------CCCCEEEEecCC-CccccCHHHHhhcceEEEeCC-c
Confidence 9999882 3567777777664220 124689999999 567899999999999888884 5
Q ss_pred CHHHHHHHHHH
Q 007444 300 TFEDRVAAVGI 310 (603)
Q Consensus 300 ~~e~r~eI~~~ 310 (603)
+.+.|.+|+..
T Consensus 302 ~~~~r~~il~~ 312 (444)
T 2zan_A 302 EAHARAAMFRL 312 (444)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888888764
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=4.2e-17 Score=189.09 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=137.0
Q ss_pred CcccccHHHHHHHHHhhh-------cc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||+.++..+..+.. +| ..+++||+||||||||++|++++..+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~----------------------- 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG----------------------- 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-----------------------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 568999999887733221 11 1236999999999999999999998631
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
...+|+.++++...+.+... .|. -.+.+....++|||||||+.+++++++.|+
T Consensus 548 ----------------~~~~~i~i~~s~~~~~~~~~--------~~~---l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 548 ----------------DEESMIRIDMSEYMEKHSTS--------GGQ---LTEKVRRKPYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp ----------------CTTCEEEEEGGGGCSSCCCC--------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHH
T ss_pred ----------------CCcceEEEechhcccccccc--------cch---hhHHHHhCCCeEEEEeCccccCHHHHHHHH
Confidence 14567776665544443332 011 012344456789999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC-----------CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-----------VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg-----------~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.+|++|.++ +.++....+.++++|+|||.... .|+++|++||+..|.+. |++.+++.+|+......
T Consensus 601 ~~le~g~~~--~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~-~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 601 QVLEDGRLT--DSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH-SLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHhccCeEE--cCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999843 44555555678999999995332 28999999998888887 67888888887754322
Q ss_pred HhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHH--HHHcCCCCchhH
Q 007444 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVM--EALRGGCQGHRA 370 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~--~a~~~~v~s~Ra 370 (603)
. ..+ .......+.++++++++|++ +.|++|+..++.
T Consensus 678 ~-----------------~~~---~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 715 (758)
T 3pxi_A 678 L-----------------TKR---LKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR 715 (758)
T ss_dssp H-----------------HHH---HHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred H-----------------HHH---HHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence 1 111 11123356899999999977 567777744443
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.72 E-value=1.6e-17 Score=153.24 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=101.7
Q ss_pred cccccHHHHHHHH--HhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL~--laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
+|+|++..++.+. +..+.....+|||+||||||||++|+++|....+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~------------------------------- 50 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN------------------------------- 50 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-------------------------------
Confidence 5889998887773 3333456789999999999999999999987642
Q ss_pred cccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCce
Q 007444 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~ 253 (603)
.+.+|+ +.+....+. ....|++..+++|+||||||+.++...|..|+.+|...
T Consensus 51 --------~~~~~v-~~~~~~~~~----------------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-- 103 (145)
T 3n70_A 51 --------AQGEFV-YRELTPDNA----------------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-- 103 (145)
T ss_dssp --------TTSCCE-EEECCTTTS----------------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS--
T ss_pred --------cCCCEE-EECCCCCcc----------------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc--
Confidence 245676 655443322 12346788899999999999999999999999999433
Q ss_pred eEeeCCeeeEecCCcEEEEEeCCC------CCCccHHHHhhhcccccccCCCC
Q 007444 254 IVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMT 300 (603)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~------eg~L~~~LldRf~l~v~v~~p~~ 300 (603)
+.++.+|+|||.+ ++.++++|++||... .+..|+.
T Consensus 104 -----------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~-~i~lPpL 144 (145)
T 3n70_A 104 -----------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT-QIACLPL 144 (145)
T ss_dssp -----------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHH-EEECCCC
T ss_pred -----------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCC-EEeCCCC
Confidence 2367899999964 468999999999865 5665654
No 43
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.72 E-value=1.3e-17 Score=183.74 Aligned_cols=215 Identities=17% Similarity=0.177 Sum_probs=147.0
Q ss_pred CCCCCCcccccHHHHHHHHHhhh-------------ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLGAI-------------DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laav-------------~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
....|++|+|++..++.|.-... .+...+|||+||||||||++|++++..+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---------------- 262 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---------------- 262 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------------
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------------
Confidence 46789999999999998843222 2345789999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccC---ceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHR---GVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~---gIL~IDEi 233 (603)
+.+|+.+.+....+.++|... ....+++..|.. +|||||||
T Consensus 263 --------------------------~~~fv~vn~~~l~~~~~g~~~----------~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 263 --------------------------GAFFFLINGPEIMSKLAGESE----------SNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp --------------------------SSEEEEEEHHHHHTSCTTHHH----------HHHHHHHHHHHHTCSEEEEEESH
T ss_pred --------------------------CCCEEEEEchHhhhhhcchhH----------HHHHHHHHHHHhcCCcEEEecch
Confidence 456777766666666666421 111345555543 59999999
Q ss_pred ccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCC
Q 007444 234 NLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (603)
Q Consensus 234 ~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~ 300 (603)
+.+. ..+++.|+..|+... .+.+++||+||| .+..|+++|.+ ||+..+.+.. ++
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn-~~~~Ld~al~r~gRf~~~i~i~~-P~ 373 (489)
T 3hu3_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-PD 373 (489)
T ss_dssp HHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEES-CGGGBCGGGGSTTSSCEEEECCC-CC
T ss_pred hhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecC-CccccCHHHhCCCcCceEEEeCC-CC
Confidence 7664 378899999998543 234689999999 45678899988 9999989984 58
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHH-HHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 301 ~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~-~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
.++|.+|++.... ...+..+ .+..+ +......+.+....+++.|.
T Consensus 374 ~~eR~~IL~~~~~-------------------------------~~~l~~~~~l~~l---a~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 374 ATGRLEILQIHTK-------------------------------NMKLADDVDLEQV---ANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp HHHHHHHHHHHTT-------------------------------TSCBCTTCCHHHH---HHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------------------------------cCCCcchhhHHHH---HHHccCCcHHHHHHHHHHHH
Confidence 8889888764311 1111111 12233 32333335566666667666
Q ss_pred HHHHHcCCC-----------------CCcHHHHHHHHHHHc
Q 007444 380 CLAALEGRE-----------------KVNVDDLKKAVELVI 403 (603)
Q Consensus 380 a~Aal~gr~-----------------~Vt~eDv~~A~~lvl 403 (603)
..|..++.. .|+.+|+..|+.-+-
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp HHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred HHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCC
Confidence 666555433 488999999877554
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=5.3e-17 Score=188.23 Aligned_cols=221 Identities=19% Similarity=0.183 Sum_probs=144.6
Q ss_pred CcccccHHHHHHHHHhhh-------cc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 95 ~~IvGq~~~k~aL~laav-------~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
..|+||++++..+..+.. +| ..+++||+||||||||++|++++..+.. .. ..++|..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-~~---~~i~~s~---------- 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-EL---LRFDMSE---------- 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-EE---EEEEGGG----------
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-CE---EEEechh----------
Confidence 458999999877733221 11 1347999999999999999999998731 11 1122200
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL 245 (603)
+....+..+++|...-..+...+. .-.+.+..+.++|||||||+.+++++++.|+
T Consensus 524 -----------------------~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 578 (758)
T 1r6b_X 524 -----------------------YMERHTVSRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAHPDVFNILL 578 (758)
T ss_dssp -----------------------CSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSCHHHHHHHH
T ss_pred -----------------------hcchhhHhhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCccccCHHHHHHHH
Confidence 011123345555311000000010 1124455677899999999999999999999
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC------------------------CCccHHHHhhhcccccccCCCCH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e------------------------g~L~~~LldRf~l~v~v~~p~~~ 301 (603)
++|++|.++. ..|..+.+ .++++|+|+|+.. +.++++|++||+..|.+. |++.
T Consensus 579 ~~le~~~~~~-~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~-~l~~ 655 (758)
T 1r6b_X 579 QVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD-HLST 655 (758)
T ss_dssp HHHHHSEEEE-TTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC-CCCH
T ss_pred HHhcCcEEEc-CCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeC-CCCH
Confidence 9999998653 34555544 5799999999732 268899999999888887 6788
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~A 378 (603)
+++..|+.....- +..++ ....-.+.++++++++|++++|+.+. +.|...++++.+
T Consensus 656 ~~~~~i~~~~l~~-----------------~~~~~---~~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~l~~~i~~~ 711 (758)
T 1r6b_X 656 DVIHQVVDKFIVE-----------------LQVQL---DQKGVSLEVSQEARNWLAEKGYDRAM-GARPMARVIQDN 711 (758)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHH---HHTTEEEEECHHHHHHHHHHHCBTTT-BTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHH---HHCCcEEEeCHHHHHHHHHhCCCcCC-CchHHHHHHHHH
Confidence 8777777643221 01111 11111367999999999999999876 678777776543
No 45
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.68 E-value=1.7e-17 Score=152.89 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=97.2
Q ss_pred cccccHHHHHHHHH--hhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccc
Q 007444 96 AVVGQDAIKTALLL--GAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (603)
Q Consensus 96 ~IvGq~~~k~aL~l--aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~ 173 (603)
+++|+++.++.+.. ..+.....+|||+||||||||++|++++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~--------------------------------- 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG--------------------------------- 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT---------------------------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 47899988877732 2333456789999999999999999998754
Q ss_pred cccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCce
Q 007444 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (603)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~ 253 (603)
. +|+.+++....+.+ ..|++..+++|+||||||+.++.+.|..|+.+++++.
T Consensus 52 ---------~-~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~- 103 (143)
T 3co5_A 52 ---------T-PWVSPARVEYLIDM-----------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE- 103 (143)
T ss_dssp ---------S-CEECCSSTTHHHHC-----------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT-
T ss_pred ---------C-CeEEechhhCChHh-----------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC-
Confidence 2 56666655432222 3467888899999999999999999999999999763
Q ss_pred eEeeCCeeeEecCCcEEEEEeCCCCCC----ccHHHHhhhcccccccCCCC
Q 007444 254 IVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRIAINLSADLPMT 300 (603)
Q Consensus 254 ~v~r~G~s~~~p~~~~lIattNp~eg~----L~~~LldRf~l~v~v~~p~~ 300 (603)
+.++.+|+|+|..... ++++|++||... .+..|+.
T Consensus 104 -----------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~-~i~lPpL 142 (143)
T 3co5_A 104 -----------RCRVRVIASCSYAAGSDGISCEEKLAGLFSES-VVRIPPL 142 (143)
T ss_dssp -----------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSE-EEEECCC
T ss_pred -----------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCc-EEeCCCC
Confidence 3467899999964322 889999998765 4555553
No 46
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=6.8e-16 Score=161.55 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=148.6
Q ss_pred CccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
.+.++..+++|..|++|+|+++++..|..........++||+||||||||+++++++..+.....
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~--------------- 87 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL--------------- 87 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH---------------
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc---------------
Confidence 34566777899999999999999999977665444467999999999999999999988631000
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCc--ccccccccc-chhccccCcccccccchhcccCceEEecccccCC
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVD-VEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD 237 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~--~~~l~G~ld-l~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~ 237 (603)
....++.+..... .+.+...+. +......+......+.....+.+||||||++.++
T Consensus 88 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~ 146 (353)
T 1sxj_D 88 ---------------------MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146 (353)
T ss_dssp ---------------------HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC
T ss_pred ---------------------cccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC
Confidence 0122333322110 000000000 0000000000000001112345799999999999
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
...++.|+..|++.. .+..+|.++| ....+.+++.+||. .+.+. |++.++..+++....
T Consensus 147 ~~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~l~sR~~-~i~~~-~~~~~~~~~~l~~~~----- 205 (353)
T 1sxj_D 147 ADAQSALRRTMETYS-------------GVTRFCLICN-YVTRIIDPLASQCS-KFRFK-ALDASNAIDRLRFIS----- 205 (353)
T ss_dssp HHHHHHHHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHHHSE-EEECC-CCCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcC-------------CCceEEEEeC-chhhCcchhhccCc-eEEeC-CCCHHHHHHHHHHHH-----
Confidence 999999999999754 1345666777 45568899999997 44676 556665555543210
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCC-CCcHHHHH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGRE-KVNVDDLK 396 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~-~Vt~eDv~ 396 (603)
....+.++++++++|+++++ ...|..+.+++.+..++.-.+.. .|+.+||.
T Consensus 206 ------------------------~~~~~~i~~~~l~~l~~~~~----G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~ 257 (353)
T 1sxj_D 206 ------------------------EQENVKCDDGVLERILDISA----GDLRRGITLLQSASKGAQYLGDGKNITSTQVE 257 (353)
T ss_dssp ------------------------HTTTCCCCHHHHHHHHHHTS----SCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHH
T ss_pred ------------------------HHhCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHhcCCCccCccccHHHHH
Confidence 11346799999999998875 25799898887777665433333 79999999
Q ss_pred HHHH
Q 007444 397 KAVE 400 (603)
Q Consensus 397 ~A~~ 400 (603)
+++.
T Consensus 258 ~~~~ 261 (353)
T 1sxj_D 258 ELAG 261 (353)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8765
No 47
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.67 E-value=9.4e-17 Score=179.30 Aligned_cols=234 Identities=21% Similarity=0.210 Sum_probs=136.4
Q ss_pred CCcccccHHHHHHHH----Hhhhcc--CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 94 LAAVVGQDAIKTALL----LGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 94 f~~IvGq~~~k~aL~----laav~p--~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
..+++|++.++..+. +..++. ...++||+||||||||++|++|+..+.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~-------------------------- 133 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG-------------------------- 133 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT--------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC--------------------------
Confidence 356899999998872 222222 244699999999999999999999874
Q ss_pred cccccccccccccccCCCeEEcCCCC--ccccccccccchhccccCcccc-cccchhcc--cCceEEecccccCCHH---
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVF-QPGLLAEA--HRGVLYIDEINLLDEG--- 239 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~--~~~~l~G~ldl~~~l~~g~~~~-~~Gll~~A--~~gIL~IDEi~~l~~~--- 239 (603)
.+|+.+..+. ....++|... -+.|...- ....+..+ +++|||||||+.++..
T Consensus 134 ----------------~~~~~i~~~~~~~~~~~~g~~~----~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~ 193 (543)
T 3m6a_A 134 ----------------RKFVRISLGGVRDESEIRGHRR----TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG 193 (543)
T ss_dssp ----------------CEEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC-----
T ss_pred ----------------CCeEEEEecccchhhhhhhHHH----HHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc
Confidence 2233332221 1222333210 00011000 00122333 6789999999999887
Q ss_pred -HHHHHHHHHHcCcee-EeeCCeeeEec-CCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 240 -ISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 240 -~~~~LL~~l~~g~~~-v~r~G~s~~~p-~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.++.||.+|+.+.+. +...+....++ .++++|+|+| ....++++|++||.+ |.+. +++.+++.+|+.....
T Consensus 194 ~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN-~~~~l~~aL~~R~~v-i~~~-~~~~~e~~~Il~~~l~--- 267 (543)
T 3m6a_A 194 DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN-NLATIPGPLRDRMEI-INIA-GYTEIEKLEIVKDHLL--- 267 (543)
T ss_dssp ----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS-STTTSCHHHHHHEEE-EECC-CCCHHHHHHHHHHTHH---
T ss_pred CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC-ccccCCHHHHhhcce-eeeC-CCCHHHHHHHHHHHHH---
Confidence 569999999876532 23333333333 4789999999 567889999999975 5887 5688888888764321
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHh-ccccCCCHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHHHHHH---c---CCC
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVM-EALRGGCQGHRAELYAARVAKCLAAL---E---GRE 388 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~-l~~v~is~~~l~~L~~-~a~~~~v~s~Ra~i~llr~Ara~Aal---~---gr~ 388 (603)
......... ...+.++++++..|+. +.|++|+ |.+.+.++.+...|+. . +..
T Consensus 268 -----------------~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v---R~L~~~i~~~~~~aa~~~~~~~~~~~ 327 (543)
T 3m6a_A 268 -----------------PKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV---RSLERQLAAICRKAAKAIVAEERKRI 327 (543)
T ss_dssp -----------------HHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS---HHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred -----------------HHHHHHcCCCcccccCCHHHHHHHHHhCChhhch---hHHHHHHHHHHHHHHHHHHhcCCcce
Confidence 011111111 2256789999998776 6677776 5444443333333322 2 344
Q ss_pred CCcHHHHHHHH
Q 007444 389 KVNVDDLKKAV 399 (603)
Q Consensus 389 ~Vt~eDv~~A~ 399 (603)
.|+.+|+.+++
T Consensus 328 ~It~~~l~~~L 338 (543)
T 3m6a_A 328 TVTEKNLQDFI 338 (543)
T ss_dssp EECTTTTHHHH
T ss_pred ecCHHHHHHHh
Confidence 68999998765
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.8e-15 Score=146.15 Aligned_cols=216 Identities=21% Similarity=0.181 Sum_probs=140.2
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
.+.++..|.+++|++..+..|..........++||+||+|||||++++.++..+....
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~---------------------- 66 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN---------------------- 66 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG----------------------
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc----------------------
Confidence 3456788999999999999886555544556799999999999999999998752100
Q ss_pred ccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~ 246 (603)
....++.+...... +.-.+...+.. ......+...++++|||||++.++...++.|+.
T Consensus 67 ---------------~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 124 (226)
T 2chg_A 67 ---------------WRDNFIEMNASDER----GIDVVRHKIKE---FARTAPIGGAPFKIIFLDEADALTADAQAALRR 124 (226)
T ss_dssp ---------------GGGGEEEEETTCTT----CHHHHHHHHHH---HHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred ---------------cccceEEecccccc----ChHHHHHHHHH---HhcccCCCccCceEEEEeChhhcCHHHHHHHHH
Confidence 01233333222110 00000000000 000011223456899999999999999999999
Q ss_pred HHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhh
Q 007444 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVE 326 (603)
Q Consensus 247 ~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~ 326 (603)
.++... .++.+|+++| ....+.+.+.+||. .+.+. |++.++..+++....
T Consensus 125 ~l~~~~-------------~~~~~i~~~~-~~~~~~~~l~~r~~-~i~~~-~~~~~~~~~~l~~~~-------------- 174 (226)
T 2chg_A 125 TMEMYS-------------KSCRFILSCN-YVSRIIEPIQSRCA-VFRFK-PVPKEAMKKRLLEIC-------------- 174 (226)
T ss_dssp HHHHTT-------------TTEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHH--------------
T ss_pred HHHhcC-------------CCCeEEEEeC-ChhhcCHHHHHhCc-eeecC-CCCHHHHHHHHHHHH--------------
Confidence 998642 2567888888 45678899999998 55776 566666655544211
Q ss_pred HhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 327 EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 327 ~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
. ...+.+++++++.|...+ .+ ..|..+.+++.+... . ..|+.+||++++.
T Consensus 175 -------------~--~~~~~~~~~~~~~l~~~~-~g---~~r~l~~~l~~~~~~---~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 175 -------------E--KEGVKITEDGLEALIYIS-GG---DFRKAINALQGAAAI---G--EVVDADTIYQITA 224 (226)
T ss_dssp -------------H--HHTCCBCHHHHHHHHHHH-TT---CHHHHHHHHHHHHHT---C--SCBCHHHHHHHHH
T ss_pred -------------H--HcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHHHHhc---C--ceecHHHHHHHhc
Confidence 0 013568899988888654 44 357777776554432 2 6899999999875
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=4.1e-16 Score=156.67 Aligned_cols=212 Identities=22% Similarity=0.253 Sum_probs=135.8
Q ss_pred CCCCCCCcccccHHHHHHHHHhh--h-cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGA--I-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laa--v-~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~ 156 (603)
.+.++|++|+|+++++..+.-.. . ++ -..|++|+||+|||||+++++++..+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--------------- 74 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--------------- 74 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---------------
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---------------
Confidence 45789999999999888772111 1 11 134699999999999999999999863
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEeccc
Q 007444 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (603)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi 233 (603)
.+++.+........++|.. .+. ...++..+ ...++|+|||
T Consensus 75 ---------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 75 ---------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp ---------------------------CCEEEEEHHHHHHSCTTHH--HHH--------HHHHHHHHTTSSSEEEEEETH
T ss_pred ---------------------------CCEEEeeHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCeEEEehhh
Confidence 2333332111111112210 000 01122222 2369999999
Q ss_pred ccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccC
Q 007444 234 NLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (603)
Q Consensus 234 ~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~ 297 (603)
+.+. ...++.|+..|+.+.. ...+++++++| .+..+++++++ ||+..+.+..
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-----------~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~~ 185 (254)
T 1ixz_A 118 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA 185 (254)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHTCCT-----------TCCEEEEEEES-CGGGSCGGGGSTTSSCEEEECCS
T ss_pred hhhhcccCccccccchHHHHHHHHHHHHHhCCCC-----------CCCEEEEEccC-CchhCCHHHcCCCcCCeEEeeCC
Confidence 7662 2346777777775531 11367888888 66778999998 8999999984
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHH
Q 007444 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAAR 376 (603)
Q Consensus 298 p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr 376 (603)
++.++|.+|++... ....++++. +..++. .|.+ .+.|....+++
T Consensus 186 -p~~~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la~-~~~G--~~~~dl~~~~~ 230 (254)
T 1ixz_A 186 -PDVKGREQILRIHA-------------------------------RGKPLAEDVDLALLAK-RTPG--FVGADLENLLN 230 (254)
T ss_dssp -CCHHHHHHHHHHHH-------------------------------TTSCBCTTCCHHHHHH-TCTT--CCHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHH-------------------------------cCCCCCcccCHHHHHH-HcCC--CCHHHHHHHHH
Confidence 58888888875321 112333332 333332 2333 34588888888
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHH
Q 007444 377 VAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 377 ~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
.|...|...++..|+.+|+++|+
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 88888888888899999999875
No 50
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=4.4e-17 Score=187.79 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=117.0
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.+.|++|.|.+++|+.|.-+...| ...||||+||||||||++|++++..+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-------------- 535 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-------------- 535 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--------------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--------------
Confidence 346788999999999999995444332 23579999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+......+.++|.- ++.+ .-+|..| .++|||||
T Consensus 536 ----------------------------~~~f~~v~~~~l~s~~vGes--e~~v--------r~lF~~Ar~~~P~IifiD 577 (806)
T 3cf2_A 536 ----------------------------QANFISIKGPELLTMWFGES--EANV--------REIFDKARQAAPCVLFFD 577 (806)
T ss_dssp ----------------------------TCEEEECCHHHHHTTTCSSC--HHHH--------HHHHHHHHTTCSEEEECS
T ss_pred ----------------------------CCceEEeccchhhccccchH--HHHH--------HHHHHHHHHcCCceeech
Confidence 67888888777778888852 2221 2345544 46899999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
||+.+- ..+++.||..|+.-. -..+++|||||| .+..|+++|++ ||+.+|++
T Consensus 578 EiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi~aTN-~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp CGGGCC--------------CHHHHHHHHHHHSSC-----------SSSSEEEECC-C-CSSSSCHHHHSTTTSCCEEEC
T ss_pred hhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEeCC-CchhCCHhHcCCCcceEEEEE
Confidence 999872 136888999998432 112578999999 78899999999 99999999
Q ss_pred cCCCCHHHHHHHHH
Q 007444 296 DLPMTFEDRVAAVG 309 (603)
Q Consensus 296 ~~p~~~e~r~eI~~ 309 (603)
+.| +.+.|.+|++
T Consensus 646 ~lP-d~~~R~~il~ 658 (806)
T 3cf2_A 646 PLP-DEKSRVAILK 658 (806)
T ss_dssp ------CHHHHTTT
T ss_pred CCc-CHHHHHHHHH
Confidence 965 8898988865
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=5.3e-16 Score=182.13 Aligned_cols=214 Identities=23% Similarity=0.285 Sum_probs=134.9
Q ss_pred CCcccccHHHHHHHHHhhh-------ccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 94 LAAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 94 f~~IvGq~~~k~aL~laav-------~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
+..|+|++.++..+..+.. +|. .++|||+||+|||||++|++|+..+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---------------------- 614 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---------------------- 614 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS----------------------
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC----------------------
Confidence 3568999998888733221 121 257999999999999999999998742
Q ss_pred ccccccccccccccccccCCCeEEcCCCC-----ccccccccccchhccccCccc--ccccchhcccCceEEecccccCC
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTV--FQPGLLAEAHRGVLYIDEINLLD 237 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-----~~~~l~G~ldl~~~l~~g~~~--~~~Gll~~A~~gIL~IDEi~~l~ 237 (603)
...+|+.++++. ...+++|... + +.|... .-.+.+....++|||||||+.++
T Consensus 615 -----------------~~~~~i~i~~~~~~~~~~~s~l~g~~~---~-~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~ 673 (854)
T 1qvr_A 615 -----------------TEEAMIRIDMTEYMEKHAVSRLIGAPP---G-YVGYEEGGQLTEAVRRRPYSVILFDEIEKAH 673 (854)
T ss_dssp -----------------SGGGEEEECTTTCCSSGGGGGC------------------CHHHHHHHCSSEEEEESSGGGSC
T ss_pred -----------------CCCcEEEEechhccchhHHHHHcCCCC---C-CcCccccchHHHHHHhCCCeEEEEecccccC
Confidence 123444444332 2334444210 0 001000 00122334457899999999999
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC------C-------------------CCCccHHHHhhhccc
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------E-------------------EGVVREHLLDRIAIN 292 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp------~-------------------eg~L~~~LldRf~l~ 292 (603)
+++++.|+++|++|.++ ...|..+.+ .++++|+|||. + .+.|+++|++||+..
T Consensus 674 ~~~~~~Ll~~l~~~~~~-~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~ 751 (854)
T 1qvr_A 674 PDVFNILLQILDDGRLT-DSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI 751 (854)
T ss_dssp HHHHHHHHHHHTTTEEC-CSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBC
T ss_pred HHHHHHHHHHhccCceE-CCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeE
Confidence 99999999999999854 223333333 25779999996 1 456899999999988
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH--cCCCCchhH
Q 007444 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHRA 370 (603)
Q Consensus 293 v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~--~~~v~s~Ra 370 (603)
+.+. |++.++...|+...+.. +..++ ......+.++++++++|+.++| ++|+ |.
T Consensus 752 i~~~-pl~~edi~~i~~~~l~~-----------------~~~~~---~~~~~~~~~~~~a~~~L~~~~~~~~gn~---R~ 807 (854)
T 1qvr_A 752 VVFR-PLTKEQIRQIVEIQLSY-----------------LRARL---AEKRISLELTEAAKDFLAERGYDPVFGA---RP 807 (854)
T ss_dssp CBCC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HTTTCEEEECHHHHHHHHHHHCBTTTBT---ST
T ss_pred EeCC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCceEEECHHHHHHHHHcCCCCCCCh---HH
Confidence 7765 67777766666543221 00011 1111135799999999999999 6766 55
Q ss_pred HHHHHH
Q 007444 371 ELYAAR 376 (603)
Q Consensus 371 ~i~llr 376 (603)
+.++++
T Consensus 808 L~~~i~ 813 (854)
T 1qvr_A 808 LRRVIQ 813 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=3.8e-15 Score=161.27 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=100.2
Q ss_pred hcc-cCceEEecccccCCH------------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEe-----CCCCCCcc
Q 007444 221 AEA-HRGVLYIDEINLLDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATY-----NPEEGVVR 282 (603)
Q Consensus 221 ~~A-~~gIL~IDEi~~l~~------------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIatt-----Np~eg~L~ 282 (603)
..| .+||||+|||+.+.. .+|+.||.+|+...+.. . ...+. -.++++|+|. ||. .+.
T Consensus 246 ~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~-~~~~d-~~~ilfI~~gaf~~~~~~--dli 320 (444)
T 1g41_A 246 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-K-HGMVK-TDHILFIASGAFQVARPS--DLI 320 (444)
T ss_dssp HHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-T-TEEEE-CTTCEEEEEECCSSCCGG--GSC
T ss_pred HHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-c-cceec-CCcEEEEeccccccCChh--hcc
Confidence 344 678999999998853 38899999999776554 1 12222 2367888887 543 366
Q ss_pred HHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHc
Q 007444 283 EHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR 362 (603)
Q Consensus 283 ~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~ 362 (603)
|+|++||.++|.++ +++.++...|+..-.. ..+..+...-......+.++++++..|++.+..
T Consensus 321 pel~~R~~i~i~l~-~lt~~e~~~Il~~~~~----------------~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~ 383 (444)
T 1g41_A 321 PELQGRLPIRVELT-ALSAADFERILTEPHA----------------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 383 (444)
T ss_dssp HHHHTTCCEEEECC-CCCHHHHHHHHHSSTT----------------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred hHHhcccceeeeCC-CCCHHHHHHHHHHHHH----------------hHHHHHHHHhcccCceEEECHHHHHHHHHHHHH
Confidence 99999999999998 7899988888741000 001111111111223567999999999998764
Q ss_pred -----CCCCchhHHHHHHHHHHHHHHHc-----C-CCCCcHHHHHHHHH
Q 007444 363 -----GGCQGHRAELYAARVAKCLAALE-----G-REKVNVDDLKKAVE 400 (603)
Q Consensus 363 -----~~v~s~Ra~i~llr~Ara~Aal~-----g-r~~Vt~eDv~~A~~ 400 (603)
.+ .|.|.+..++...-.-+.++ + .-.|+.++|.+.+.
T Consensus 384 ~~~~t~~-~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 384 VNEKTEN-IGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHHSCC-CGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred hccCCcc-CCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 23 36787766665433333332 1 12478888887554
No 53
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.64 E-value=7e-16 Score=157.33 Aligned_cols=211 Identities=22% Similarity=0.255 Sum_probs=133.3
Q ss_pred CCCCCCcccccHHHHHHHHHhh--h-cc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCC
Q 007444 90 QFFPLAAVVGQDAIKTALLLGA--I-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laa--v-~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~ 157 (603)
+.+.|++|+|+++++..+.-.. . ++ -..||+|+||+|||||+++++|+..+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---------------- 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---------------- 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----------------
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----------------
Confidence 6789999999999988773111 1 10 124699999999999999999999873
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecccc
Q 007444 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (603)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDEi~ 234 (603)
.+++.+........+.|.. .+. ...++..+ ...++|+|||+
T Consensus 99 --------------------------~~~i~~~~~~~~~~~~~~~--~~~--------i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 99 --------------------------VPFITASGSDFVEMFVGVG--AAR--------VRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp --------------------------CCEEEEEHHHHHHSTTTHH--HHH--------HHHHHHHHHTSCSEEEEEETHH
T ss_pred --------------------------CCEEEecHHHHHHHHhhHH--HHH--------HHHHHHHHHhcCCcEEehhhhH
Confidence 2333332111111111110 000 00122222 24699999998
Q ss_pred cCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCC
Q 007444 235 LLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (603)
Q Consensus 235 ~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p 298 (603)
.+. ...++.++..|+.+. ....+++++++| .+..+++++++ ||+..|.+..
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-----------~~~~~i~~a~t~-~p~~ld~~l~r~~rf~~~i~i~~- 209 (278)
T 1iy2_A 143 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATN-RPDILDPALLRPGRFDRQIAIDA- 209 (278)
T ss_dssp HHHCC--------CHHHHHHHHHHHHHHTTCC-----------TTCCEEEEEEES-CTTSSCHHHHSTTSSCCEEECCC-
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEecC-CchhCCHhHcCCCcCCeEEEeCC-
Confidence 652 234456666665443 112467888888 56779999997 8999999984
Q ss_pred CCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHH-HHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 299 ~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~-l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
++.++|.+|++... ....+++++ +..++ ..|.++ +.|....+++.
T Consensus 210 p~~~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la-~~~~G~--~~~dl~~l~~~ 255 (278)
T 1iy2_A 210 PDVKGREQILRIHA-------------------------------RGKPLAEDVDLALLA-KRTPGF--VGADLENLLNE 255 (278)
T ss_dssp CCHHHHHHHHHHHH-------------------------------TTSCBCTTCCHHHHH-HTCTTC--CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-------------------------------ccCCCCcccCHHHHH-HHcCCC--CHHHHHHHHHH
Confidence 58888888875311 112333333 33332 234433 45777788888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHH
Q 007444 378 AKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
|...|...+...|+.+|+++|+
T Consensus 256 a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 256 AALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHh
Confidence 8888888888899999999875
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=1e-14 Score=143.51 Aligned_cols=208 Identities=13% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCCCCccccc---HHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 91 FFPLAAVVGQ---DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 91 ~~~f~~IvGq---~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
.++|++++|. ..+...|......+...+++|+||+|||||+++++++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~------------------------- 78 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE------------------------- 78 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH-------------------------
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------------------------
Confidence 3789999972 456666644444445688999999999999999999987631
Q ss_pred cccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH--HHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLL 245 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~--~~~LL 245 (603)
...+++.+......+.+...+ -.....++|||||++.++... ++.|+
T Consensus 79 --------------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~vliiDe~~~~~~~~~~~~~l~ 127 (242)
T 3bos_A 79 --------------LERRSFYIPLGIHASISTALL-----------------EGLEQFDLICIDDVDAVAGHPLWEEAIF 127 (242)
T ss_dssp --------------TTCCEEEEEGGGGGGSCGGGG-----------------TTGGGSSEEEEETGGGGTTCHHHHHHHH
T ss_pred --------------cCCeEEEEEHHHHHHHHHHHH-----------------HhccCCCEEEEeccccccCCHHHHHHHH
Confidence 012233332221111111100 011346799999999997755 78888
Q ss_pred HHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 246 ~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
..++.... ...+.+|.++|.... .+.+.+.+||. ..+.+. |++.+++.+++.....
T Consensus 128 ~~l~~~~~-----------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~-~~~~~~~~~~l~~~~~------- 188 (242)
T 3bos_A 128 DLYNRVAE-----------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ-PMMDDEKLAALQRRAA------- 188 (242)
T ss_dssp HHHHHHHH-----------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC-CCCGGGHHHHHHHHHH-------
T ss_pred HHHHHHHH-----------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC-CCCHHHHHHHHHHHHH-------
Confidence 88764320 012335555553332 34589999996 667887 5677877777653211
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
...+.++++++++|+..+ .+ ..|..+.+++.+...|...++ .|+.+||++++.
T Consensus 189 ----------------------~~~~~~~~~~~~~l~~~~-~g---~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 189 ----------------------MRGLQLPEDVGRFLLNRM-AR---DLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp ----------------------HTTCCCCHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred ----------------------HcCCCCCHHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 113579999999888764 33 468999999888877765664 699999998864
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=1.8e-14 Score=151.09 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=151.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhc-----cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAID-----REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~-----p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
..++..|+.++|++.++..+....-. ....+++|+|||||||||++++++..+.
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--------------------- 76 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--------------------- 76 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT---------------------
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC---------------------
Confidence 34667899999999998888553321 1236799999999999999999999873
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh-cccCceEEecccccCCHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEGIS 241 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~-~A~~gIL~IDEi~~l~~~~~ 241 (603)
.++........ ...-|+.. ++. ...+.|+||||++.+...++
T Consensus 77 ---------------------~~~~~~sg~~~----~~~~~l~~------------~~~~~~~~~v~~iDE~~~l~~~~~ 119 (334)
T 1in4_A 77 ---------------------TNIHVTSGPVL----VKQGDMAA------------ILTSLERGDVLFIDEIHRLNKAVE 119 (334)
T ss_dssp ---------------------CCEEEEETTTC----CSHHHHHH------------HHHHCCTTCEEEEETGGGCCHHHH
T ss_pred ---------------------CCEEEEechHh----cCHHHHHH------------HHHHccCCCEEEEcchhhcCHHHH
Confidence 11111110000 01111110 111 12457999999999999889
Q ss_pred HHHHHHHHcCceeEe-eCCe---ee-EecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 242 NLLLNVLTEGVNIVE-REGI---SF-KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~-r~G~---s~-~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
+.|+..++.....+- ..+. .. .....|.+++++| ..+.|++.+.+||++.+.++ |++.+++.+|+....
T Consensus 120 e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~-~~~~Ls~~l~sR~~l~~~Ld-~~~~~~l~~iL~~~~---- 193 (334)
T 1in4_A 120 ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT-RSGLLSSPLRSRFGIILELD-FYTVKELKEIIKRAA---- 193 (334)
T ss_dssp HHHHHHHHTSCCCC---------------CCCEEEEEES-CGGGSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC-CcccCCHHHHHhcCceeeCC-CCCHHHHHHHHHHHH----
Confidence 999888876532110 0010 01 0123578888887 67889999999999887887 678888777765321
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
+ . ..+.++++++.+|+..+ +. +.|..+.+++.+...|...|...|+.++++
T Consensus 194 -----------------------~-~-~~~~~~~~~~~~ia~~~---~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~ 244 (334)
T 1in4_A 194 -----------------------S-L-MDVEIEDAAAEMIAKRS---RG-TPRIAIRLTKRVRDMLTVVKADRINTDIVL 244 (334)
T ss_dssp -----------------------H-H-TTCCBCHHHHHHHHHTS---TT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred -----------------------H-H-cCCCcCHHHHHHHHHhc---CC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1 1 14678999888776543 33 679999999999999999999899999999
Q ss_pred HHHHHHc
Q 007444 397 KAVELVI 403 (603)
Q Consensus 397 ~A~~lvl 403 (603)
+|+....
T Consensus 245 ~al~~~~ 251 (334)
T 1in4_A 245 KTMEVLN 251 (334)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9998753
No 56
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.61 E-value=2.8e-15 Score=155.78 Aligned_cols=219 Identities=16% Similarity=0.075 Sum_probs=138.6
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
...+..+++|..|++|+|+++++..|.-....... ..+|++||||||||++++++++.+.
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------------------- 73 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------------------- 73 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-------------------
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-------------------
Confidence 34566678899999999999999988554433222 3467788899999999999998873
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCC-HH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EG 239 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~-~~ 239 (603)
.+|+.++.+... .. ++...+.. +....-.....+||||||++.++ .+
T Consensus 74 -----------------------~~~~~i~~~~~~---~~--~i~~~~~~----~~~~~~~~~~~~vliiDEi~~l~~~~ 121 (324)
T 3u61_B 74 -----------------------ADMMFVNGSDCK---ID--FVRGPLTN----FASAASFDGRQKVIVIDEFDRSGLAE 121 (324)
T ss_dssp -----------------------EEEEEEETTTCC---HH--HHHTHHHH----HHHBCCCSSCEEEEEEESCCCGGGHH
T ss_pred -----------------------CCEEEEcccccC---HH--HHHHHHHH----HHhhcccCCCCeEEEEECCcccCcHH
Confidence 234444322211 00 00110000 00000011256799999999999 99
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
.++.|+..++... .++.+|+++| ....+.++|++||.. +.+. +++.+++.+|+........
T Consensus 122 ~~~~L~~~le~~~-------------~~~~iI~~~n-~~~~l~~~l~sR~~~-i~~~-~~~~~e~~~il~~~~~~l~--- 182 (324)
T 3u61_B 122 SQRHLRSFMEAYS-------------SNCSIIITAN-NIDGIIKPLQSRCRV-ITFG-QPTDEDKIEMMKQMIRRLT--- 182 (324)
T ss_dssp HHHHHHHHHHHHG-------------GGCEEEEEES-SGGGSCTTHHHHSEE-EECC-CCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCC-------------CCcEEEEEeC-CccccCHHHHhhCcE-EEeC-CCCHHHHHHHHHHHHHHHH---
Confidence 9999999998642 3568899999 455788999999974 5777 5688888887764432211
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~-~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
.+. ....+.+++ +++++|+.. +.++ .|..++.++.+. ....|+.+++.++
T Consensus 183 ---------------~~~----~~~~~~~~~~~~~~~l~~~-~~gd---~R~a~~~L~~~~------~~~~i~~~~v~~~ 233 (324)
T 3u61_B 183 ---------------EIC----KHEGIAIADMKVVAALVKK-NFPD---FRKTIGELDSYS------SKGVLDAGILSLV 233 (324)
T ss_dssp ---------------HHH----HHHTCCBSCHHHHHHHHHH-TCSC---TTHHHHHHHHHG------GGTCBCC------
T ss_pred ---------------HHH----HHcCCCCCcHHHHHHHHHh-CCCC---HHHHHHHHHHHh------ccCCCCHHHHHHH
Confidence 111 112467887 888888876 3443 488877775443 3345898888766
Q ss_pred H
Q 007444 399 V 399 (603)
Q Consensus 399 ~ 399 (603)
+
T Consensus 234 ~ 234 (324)
T 3u61_B 234 T 234 (324)
T ss_dssp -
T ss_pred h
Confidence 4
No 57
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.60 E-value=3.5e-16 Score=180.32 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=115.9
Q ss_pred CCCCCCCcccccHHHHHHHHHh----hhcc---------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLG----AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~la----av~p---------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.++|++|.|.++.|..|.-. ..+| ..+||||+||||||||++||+++..+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--------------- 262 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--------------- 262 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---------------
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---------------
Confidence 4568899999999888877322 2233 24679999999999999999999876
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
+.+|+.+......+.++|.. ++.+ ..++..| .++||||||
T Consensus 263 ---------------------------g~~~~~v~~~~l~sk~~ges--e~~l--------r~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 263 ---------------------------GAFFFLINGPEIMSKLAGES--ESNL--------RKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp ---------------------------TCEEEEEEHHHHHSSCTTHH--HHHH--------HHHHHHHTTSCSEEEEEES
T ss_pred ---------------------------CCeEEEEEhHHhhcccchHH--HHHH--------HHHHHHHHHcCCeEEEEeh
Confidence 45677776655555666631 1111 1244444 357999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.+- ..+++.||..|+.-.. ..+++||+||| ....|+++|++ ||+..|++.. |
T Consensus 306 iDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-----------~~~V~VIaaTN-~~d~LD~ALrR~GRFd~~I~i~~-P 372 (806)
T 3cf2_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------RAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-P 372 (806)
T ss_dssp GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-----------GGCEEEEEECS-STTTSCTTTTSTTSSCEEEECCC-C
T ss_pred hcccccccCCCCChHHHHHHHHHHHHHhcccc-----------cCCEEEEEecC-ChhhcCHHHhCCcccceEEecCC-C
Confidence 99873 3577888888875321 12578999999 77889999998 9999999985 5
Q ss_pred CHHHHHHHHHH
Q 007444 300 TFEDRVAAVGI 310 (603)
Q Consensus 300 ~~e~r~eI~~~ 310 (603)
+.+.|.+|++.
T Consensus 373 d~~~R~~IL~~ 383 (806)
T 3cf2_A 373 DATGRLEILQI 383 (806)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999764
No 58
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=150.84 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=101.2
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
.+.+.|++|.|.+++|+.|....+.| -..|++|+||||||||+|+++|+..+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-------------- 69 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-------------- 69 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--------------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--------------
Confidence 35688999999999999885332211 135699999999999999999999874
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
.+++.+........++|.. ++.+ .-++..+ ...++|+||
T Consensus 70 ----------------------------~~~i~i~g~~l~~~~~~~~--~~~i--------~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 70 ----------------------------LNFISVKGPELLNMYVGES--ERAV--------RQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp ----------------------------CEEEEEETTTTCSSTTHHH--HHHH--------HHHHHHHHHTCSEEEEEET
T ss_pred ----------------------------CCEEEEEcHHHHhhhhhHH--HHHH--------HHHHHHHHhcCCCeEeeeh
Confidence 2344443322222333321 1110 0112222 356999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.+. ..+++.++..|+.+.. ...+++++++| .+..|++++++ ||+..|.++. +
T Consensus 112 id~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-----------~~~~i~ia~tn-~p~~LD~al~r~gRfd~~i~~~~-P 178 (274)
T 2x8a_A 112 VDALCPRRSDRETGASVRVVNQLLTEMDGLEA-----------RQQVFIMAATN-RPDIIDPAILRPGRLDKTLFVGL-P 178 (274)
T ss_dssp CTTTCC---------CTTHHHHHHHHHHTCCS-----------TTCEEEEEEES-CGGGSCHHHHSTTSSCEEEECCS-C
T ss_pred hhhhhcccCCCcchHHHHHHHHHHHhhhcccc-----------cCCEEEEeecC-ChhhCCHhhcCcccCCeEEEeCC-c
Confidence 98752 2456778888876541 11467889999 77889999998 9999999985 5
Q ss_pred CHHHHHHHHHH
Q 007444 300 TFEDRVAAVGI 310 (603)
Q Consensus 300 ~~e~r~eI~~~ 310 (603)
+.++|.+|++.
T Consensus 179 ~~~~r~~il~~ 189 (274)
T 2x8a_A 179 PPADRLAILKT 189 (274)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 89999999874
No 59
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=8e-15 Score=151.42 Aligned_cols=218 Identities=18% Similarity=0.158 Sum_probs=138.4
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
.++..+++|..|++++|++.++..|..........++||+||+|||||++|+++++.+....
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~------------------ 74 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN------------------ 74 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG------------------
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc------------------
Confidence 45666788999999999999999886544444455799999999999999999998752100
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
....++.+..... .|.-.+...+.. ....+.+..++.++|||||++.++...++
T Consensus 75 -------------------~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~vliiDe~~~l~~~~~~ 128 (327)
T 1iqp_A 75 -------------------WRHNFLELNASDE----RGINVIREKVKE---FARTKPIGGASFKIIFLDEADALTQDAQQ 128 (327)
T ss_dssp -------------------HHHHEEEEETTCH----HHHHTTHHHHHH---HHHSCCGGGCSCEEEEEETGGGSCHHHHH
T ss_pred -------------------ccCceEEeecccc----CchHHHHHHHHH---HHhhCCcCCCCCeEEEEeCCCcCCHHHHH
Confidence 0112333322110 010000000000 00112233356789999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|+..+++.. .++.+|.++| ....+.+.+.+|+. .+.+. |++.++..+++....
T Consensus 129 ~L~~~le~~~-------------~~~~~i~~~~-~~~~l~~~l~sr~~-~~~~~-~l~~~~~~~~l~~~~---------- 182 (327)
T 1iqp_A 129 ALRRTMEMFS-------------SNVRFILSCN-YSSKIIEPIQSRCA-IFRFR-PLRDEDIAKRLRYIA---------- 182 (327)
T ss_dssp HHHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHHTEE-EEECC-CCCHHHHHHHHHHHH----------
T ss_pred HHHHHHHhcC-------------CCCeEEEEeC-CccccCHHHHhhCc-EEEec-CCCHHHHHHHHHHHH----------
Confidence 9999998743 2456777888 45567899999998 44776 556665544433210
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (603)
....+.++++++++|+..+ .+ +.|..+.+++.+.. ....|+.+++..+
T Consensus 183 -------------------~~~~~~~~~~~~~~l~~~~-~g---~~r~~~~~l~~~~~-----~~~~i~~~~v~~~ 230 (327)
T 1iqp_A 183 -------------------ENEGLELTEEGLQAILYIA-EG---DMRRAINILQAAAA-----LDKKITDENVFMV 230 (327)
T ss_dssp -------------------HTTTCEECHHHHHHHHHHH-TT---CHHHHHHHHHHHHT-----TCSEECHHHHHHH
T ss_pred -------------------HhcCCCCCHHHHHHHHHHC-CC---CHHHHHHHHHHHHh-----cCCCCCHHHHHHH
Confidence 1124568999999998875 23 46888887754432 1224666665543
No 60
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=1.6e-14 Score=157.31 Aligned_cols=220 Identities=17% Similarity=0.188 Sum_probs=141.8
Q ss_pred CCCCCCccc-ccH--HHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccc
Q 007444 90 QFFPLAAVV-GQD--AIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (603)
Q Consensus 90 ~~~~f~~Iv-Gq~--~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~ 165 (603)
+.++|++++ |++ .+..++...+-+|+ ..+++|+||+|||||+|++++++.+...
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~---------------------- 157 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN---------------------- 157 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH----------------------
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh----------------------
Confidence 457899987 644 33444433333454 5689999999999999999999876210
Q ss_pred cccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc--c-cCceEEecccccCCH--HH
Q 007444 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE--A-HRGVLYIDEINLLDE--GI 240 (603)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~--A-~~gIL~IDEi~~l~~--~~ 240 (603)
..+.+++.++.......+++.+ ..+.. ..+.. . ...||||||++.+.. ..
T Consensus 158 ---------------~~~~~v~~v~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~ 212 (440)
T 2z4s_A 158 ---------------EPDLRVMYITSEKFLNDLVDSM------KEGKL----NEFREKYRKKVDILLIDDVQFLIGKTGV 212 (440)
T ss_dssp ---------------CCSSCEEEEEHHHHHHHHHHHH------HTTCH----HHHHHHHTTTCSEEEEECGGGGSSCHHH
T ss_pred ---------------CCCCeEEEeeHHHHHHHHHHHH------HcccH----HHHHHHhcCCCCEEEEeCcccccCChHH
Confidence 0023444443332222233221 11110 01111 2 467999999999976 77
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHh
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
++.|+..++... ..| ..++|+|.++.. ..+.+.|++||. ..+.+. |++.+++.+|+.....
T Consensus 213 q~~l~~~l~~l~----~~~-------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~-~p~~e~r~~iL~~~~~--- 277 (440)
T 2z4s_A 213 QTELFHTFNELH----DSG-------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKSIARKMLE--- 277 (440)
T ss_dssp HHHHHHHHHHHH----TTT-------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC-CCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHH----HCC-------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC-CCCHHHHHHHHHHHHH---
Confidence 888888876422 001 234555444321 248899999996 677887 6688888888764211
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
...+.++++++.+|+..+ .+ ..|....+++.+.+.|...|+ .|+.+++.
T Consensus 278 --------------------------~~~~~i~~e~l~~la~~~-~g---n~R~l~~~L~~~~~~a~~~~~-~It~~~~~ 326 (440)
T 2z4s_A 278 --------------------------IEHGELPEEVLNFVAENV-DD---NLRRLRGAIIKLLVYKETTGK-EVDLKEAI 326 (440)
T ss_dssp --------------------------HHTCCCCTTHHHHHHHHC-CS---CHHHHHHHHHHHHHHHHHSSS-CCCHHHHH
T ss_pred --------------------------HcCCCCCHHHHHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 114678999998887654 33 569999999999999988886 69999999
Q ss_pred HHHHHH
Q 007444 397 KAVELV 402 (603)
Q Consensus 397 ~A~~lv 402 (603)
+++.-.
T Consensus 327 ~~l~~~ 332 (440)
T 2z4s_A 327 LLLKDF 332 (440)
T ss_dssp HHTSTT
T ss_pred HHHHHH
Confidence 887643
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.57 E-value=1.7e-14 Score=158.24 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=138.3
Q ss_pred cCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccc
Q 007444 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (603)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~ 166 (603)
.+.++-.|+.|+|++..++.+..........++||+||||||||++|++|+..+....
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~---------------------- 229 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE---------------------- 229 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC----------------------
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCC----------------------
Confidence 3456778999999999999886555445678999999999999999999999863200
Q ss_pred ccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchh---cccCceEEecccccCCHHHHHH
Q 007444 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~---~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.+....+.+|+.++.+ ..+.|.. + .. ..+++. ...++||||| ...+.++.
T Consensus 230 ----------~p~~l~~~~~~~l~~~---~~~~g~~--e-----~~---~~~~~~~~~~~~~~iLfiD----~~~~a~~~ 282 (468)
T 3pxg_A 230 ----------VPEILRDKRVMTLDMG---TKYRGEF--E-----DR---LKKVMDEIRQAGNIILFID----AAIDASNI 282 (468)
T ss_dssp ----------SCTTTSSCCEECC---------------C-----TT---HHHHHHHHHTCCCCEEEEC----C-------
T ss_pred ----------CChhhcCCeEEEeeCC---ccccchH--H-----HH---HHHHHHHHHhcCCeEEEEe----CchhHHHH
Confidence 0011125567776655 3333321 0 00 012222 2357899999 55567788
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~ 319 (603)
|+.+|+.+ ++.+|++||+.+. .++++|.+||.. |.+.. ++.+++.+|++.... .
T Consensus 283 L~~~L~~g---------------~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~-p~~e~~~~iL~~~~~---~-- 340 (468)
T 3pxg_A 283 LKPSLARG---------------ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQ-PSVDESIQILQGLRD---R-- 340 (468)
T ss_dssp -CCCTTSS---------------SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCC-CCHHHHHHHHHHTTT---T--
T ss_pred HHHhhcCC---------------CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCC-CCHHHHHHHHHHHHH---H--
Confidence 88877755 4679999998773 688999999996 68884 588888888763211 0
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHHHHHHcCCCC-CcHHHHH
Q 007444 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--QGHRAELYAARVAKCLAALEGREK-VNVDDLK 396 (603)
Q Consensus 320 ~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v--~s~Ra~i~llr~Ara~Aal~gr~~-Vt~eDv~ 396 (603)
+ .....+.++++++.+++.++...-. .-.+..+.++..|.+.+.+.+... ....+++
T Consensus 341 -----~---------------~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~ 400 (468)
T 3pxg_A 341 -----Y---------------EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELE 400 (468)
T ss_dssp -----S---------------GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHH
T ss_pred -----H---------------HHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 0 1123577999999999988765432 235678888888888877766432 2334444
Q ss_pred HHH
Q 007444 397 KAV 399 (603)
Q Consensus 397 ~A~ 399 (603)
..+
T Consensus 401 ~~i 403 (468)
T 3pxg_A 401 QKL 403 (468)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=7.6e-14 Score=147.12 Aligned_cols=240 Identities=18% Similarity=0.118 Sum_probs=148.2
Q ss_pred CCCCcccccHHHHHHHHHhh--h--ccCCCcEEEECCCCChHHHHHHHHHHhCCCCe-----eeccccccCCCCCCC-cc
Q 007444 92 FPLAAVVGQDAIKTALLLGA--I--DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCPD-EW 161 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laa--v--~p~~~gVLL~GppGTGKT~lArala~~l~~~~-----~~~~~~~n~~~~~~~-~~ 161 (603)
+.++.++|++..+..|.... . .....+++|+||+|||||++++.++..+.... ......+||...... .+
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 44588999999998885433 1 23456799999999999999999998763110 011112333211000 00
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcc--cccccc---hhcc-cCceEEeccccc
Q 007444 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT--VFQPGL---LAEA-HRGVLYIDEINL 235 (603)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~--~~~~Gl---l~~A-~~gIL~IDEi~~ 235 (603)
. ..++..+... ....|.. .....+ +... ...+|||||++.
T Consensus 96 ~---------------------------------~~l~~~l~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 96 A---------------------------------SAIAEAVGVR-VPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp H---------------------------------HHHHHHHSCC-CCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred H---------------------------------HHHHHHhCCC-CCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 0 0000000000 0000000 000001 1111 123999999999
Q ss_pred CCHH--HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhcc-cccccCCCCHHHHHHHHHH
Q 007444 236 LDEG--ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 236 l~~~--~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l-~v~v~~p~~~e~r~eI~~~ 310 (603)
+... .++.|..++...... ..+.++.+|+++|..+ ..+.+.+.+||.. .+.+. |++.++..+|+..
T Consensus 142 l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~-~l~~~~~~~il~~ 212 (387)
T 2v1u_A 142 LPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP-PYTAPQLRDILET 212 (387)
T ss_dssp HHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC-CCCHHHHHHHHHH
T ss_pred hcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC-CCCHHHHHHHHHH
Confidence 9876 677777776643210 0033678999998543 6789999999986 66776 6788877777653
Q ss_pred HHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCC
Q 007444 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKV 390 (603)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~V 390 (603)
.. ...+....+++++++.++.+++.... ..|..+.+++.|..+|...+...|
T Consensus 213 ~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i 264 (387)
T 2v1u_A 213 RA---------------------------EEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERV 264 (387)
T ss_dssp HH---------------------------HHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred HH---------------------------HhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCc
Confidence 21 11223467889999999999885322 469999999999988888899999
Q ss_pred cHHHHHHHHHHH
Q 007444 391 NVDDLKKAVELV 402 (603)
Q Consensus 391 t~eDv~~A~~lv 402 (603)
+.+|+..|+...
T Consensus 265 ~~~~v~~a~~~~ 276 (387)
T 2v1u_A 265 RREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=8.2e-15 Score=152.52 Aligned_cols=218 Identities=13% Similarity=0.148 Sum_probs=134.4
Q ss_pred CCCCCCccc-cc--HHHHHHHHHhhhccC--CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccc
Q 007444 90 QFFPLAAVV-GQ--DAIKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (603)
Q Consensus 90 ~~~~f~~Iv-Gq--~~~k~aL~laav~p~--~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~ 164 (603)
+.++|++++ |+ ..+..++...+-.|+ ..+++|+||||||||++++++++.+..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~---------------------- 63 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK---------------------- 63 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH----------------------
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH----------------------
Confidence 458899997 54 344555444344443 468999999999999999999987631
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCc-ccccccchhcccCceEEecccccCCH--HHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDE--GIS 241 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~-~~~~~Gll~~A~~gIL~IDEi~~l~~--~~~ 241 (603)
.+.+++.++.......+.+.+. .+. ..+.. ...+.++||||||+.++. ..+
T Consensus 64 -----------------~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~vL~iDEi~~l~~~~~~~ 117 (324)
T 1l8q_A 64 -----------------RGYRVIYSSADDFAQAMVEHLK------KGTINEFRN---MYKSVDLLLLDDVQFLSGKERTQ 117 (324)
T ss_dssp -----------------TTCCEEEEEHHHHHHHHHHHHH------HTCHHHHHH---HHHTCSEEEEECGGGGTTCHHHH
T ss_pred -----------------CCCEEEEEEHHHHHHHHHHHHH------cCcHHHHHH---HhcCCCEEEEcCcccccCChHHH
Confidence 1234555443332233333211 010 00100 112468999999999986 677
Q ss_pred HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhc--ccccccCCCCHHHHHHHHHHHHHHHhh
Q 007444 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQER 317 (603)
Q Consensus 242 ~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~--l~v~v~~p~~~e~r~eI~~~~~~f~~~ 317 (603)
..|+..++... ..| ..++++++|+-. ..+.++|++||. ..+.+. | +.+++.+|+.....
T Consensus 118 ~~l~~~l~~~~----~~~-------~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~-~-~~~e~~~il~~~~~---- 180 (324)
T 1l8q_A 118 IEFFHIFNTLY----LLE-------KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-L-DNKTRFKIIKEKLK---- 180 (324)
T ss_dssp HHHHHHHHHHH----HTT-------CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-C-CHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----HCC-------CeEEEEecCChHHHHHhhhHhhhcccCceEEEeC-C-CHHHHHHHHHHHHH----
Confidence 77777765421 001 124555554322 368999999996 556676 6 88888887664211
Q ss_pred hHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH--HH--HcCCCCC-cH
Q 007444 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL--AA--LEGREKV-NV 392 (603)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~--Aa--l~gr~~V-t~ 392 (603)
...+.++++++++|+..+ ++ .|....++..+.+. .+ +.+...| +.
T Consensus 181 -------------------------~~~~~l~~~~l~~l~~~~--g~---~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~ 230 (324)
T 1l8q_A 181 -------------------------EFNLELRKEVIDYLLENT--KN---VREIEGKIKLIKLKGFEGLERKERKERDKL 230 (324)
T ss_dssp -------------------------HTTCCCCHHHHHHHHHHC--SS---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -------------------------hcCCCCCHHHHHHHHHhC--CC---HHHHHHHHHHHHHcCHHHhccccccCCCCH
Confidence 124679999999998886 44 47777777655543 00 1333468 88
Q ss_pred HHHHHHHHHH
Q 007444 393 DDLKKAVELV 402 (603)
Q Consensus 393 eDv~~A~~lv 402 (603)
++|.+++.-.
T Consensus 231 ~~i~~~~~~~ 240 (324)
T 1l8q_A 231 MQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=1.6e-13 Score=145.19 Aligned_cols=246 Identities=14% Similarity=0.098 Sum_probs=148.8
Q ss_pred CCCCcccccHHHHHHHHHhhh----ccCCC--cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCC-Cccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAI----DREIG--GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP-DEWEDG 164 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav----~p~~~--gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~-~~~~~~ 164 (603)
+.++.++|++..+..|..... ..... .++|+||+|||||++++.++..+..........+||.+... ..+...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 445889999988887743222 12234 79999999999999999999987532101112233322110 000000
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc-ccCceEEecccccCCHHHHHH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~-A~~gIL~IDEi~~l~~~~~~~ 243 (603)
+...+ .... ...+.....++..+ . ..+.. ...-||||||++.++...++.
T Consensus 94 l~~~l-------------~~~~--~~~~~~~~~~~~~l-------------~-~~l~~~~~~~vlilDE~~~l~~~~~~~ 144 (389)
T 1fnn_A 94 IARSL-------------NIPF--PRRGLSRDEFLALL-------------V-EHLRERDLYMFLVLDDAFNLAPDILST 144 (389)
T ss_dssp HHHHT-------------TCCC--CSSCCCHHHHHHHH-------------H-HHHHHTTCCEEEEEETGGGSCHHHHHH
T ss_pred HHHHh-------------CccC--CCCCCCHHHHHHHH-------------H-HHHhhcCCeEEEEEECccccchHHHHH
Confidence 00000 0000 00000000000000 0 01111 123499999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhcc-cccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l-~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
|+..++.... .+ ..++.+|+++|..+ ..+.+.+.+||.. .+.+. |++.++..+++....
T Consensus 145 L~~~~~~~~~----~~-----~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~-pl~~~~~~~~l~~~~-------- 206 (389)
T 1fnn_A 145 FIRLGQEADK----LG-----AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFS-PYTKDQIFDILLDRA-------- 206 (389)
T ss_dssp HHHHTTCHHH----HS-----SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECC-CCBHHHHHHHHHHHH--------
T ss_pred HHHHHHhCCC----CC-----cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeC-CCCHHHHHHHHHHHH--------
Confidence 9998864310 00 02567888888432 4578899999986 55665 667776666654321
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcC------CCCchhHHHHHHHHHHHHHHHcCCCCCcHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~------~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eD 394 (603)
........+++++++.+++.+|.. +. ..|..+.+++.|..+|...+...|+.+|
T Consensus 207 -------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 266 (389)
T 1fnn_A 207 -------------------KAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPED 266 (389)
T ss_dssp -------------------HHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred -------------------HhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 111223478999999999998743 22 5799999999999999888999999999
Q ss_pred HHHHHHHHcC
Q 007444 395 LKKAVELVIL 404 (603)
Q Consensus 395 v~~A~~lvl~ 404 (603)
+..++..+..
T Consensus 267 v~~~~~~~~~ 276 (389)
T 1fnn_A 267 VRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=1e-13 Score=135.21 Aligned_cols=235 Identities=21% Similarity=0.192 Sum_probs=138.8
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccC-CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~-~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
+..+.++..|.+++|++.++..|........ .+.++|+||+|||||++++.+++.+...... ....| .+|.
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~--~~~~~------~~~~ 84 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPC------GVCD 84 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS--CSSCC------SCSH
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCC------cccH
Confidence 3445677889999999999998855443322 2469999999999999999999876421100 00001 0111
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.|.... .. ....++.+..... .... ++...+. . .. .........+|||||++.++...++.
T Consensus 85 ~~~~~~---~~-------~~~~~~~~~~~~~--~~~~--~~~~~~~-~---~~-~~~~~~~~~vlviDe~~~l~~~~~~~ 145 (250)
T 1njg_A 85 NCREIE---QG-------RFVDLIEIDAASR--TKVE--DTRDLLD-N---VQ-YAPARGRFKVYLIDEVHMLSRHSFNA 145 (250)
T ss_dssp HHHHHH---TT-------CCSSEEEEETTCG--GGHH--HHHHHHH-S---CC-CSCSSSSSEEEEEETGGGSCHHHHHH
T ss_pred HHHHHh---cc-------CCcceEEecCccc--ccHH--HHHHHHH-H---hh-hchhcCCceEEEEECcccccHHHHHH
Confidence 111000 00 0111222211100 0000 0000000 0 00 00012245799999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+..++.. +.++.+|+++| ....+.+.+++|+ ..+.+. |++.++..+++.....
T Consensus 146 l~~~l~~~-------------~~~~~~i~~t~-~~~~~~~~l~~r~-~~i~l~-~l~~~e~~~~l~~~~~---------- 199 (250)
T 1njg_A 146 LLKTLEEP-------------PEHVKFLLATT-DPQKLPVTILSRC-LQFHLK-ALDVEQIRHQLEHILN---------- 199 (250)
T ss_dssp HHHHHHSC-------------CTTEEEEEEES-CGGGSCHHHHTTS-EEEECC-CCCHHHHHHHHHHHHH----------
T ss_pred HHHHHhcC-------------CCceEEEEEeC-ChHhCCHHHHHHh-hhccCC-CCCHHHHHHHHHHHHH----------
Confidence 99999753 23567888888 4557788999996 445776 5677766665442210
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
...+.+++++++.|++.+ .+ ..|..+.+++.+ ...+...|+.+||++++
T Consensus 200 -------------------~~~~~~~~~~~~~l~~~~-~G---~~~~~~~~~~~~----~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 200 -------------------EEHIAHEPRALQLLARAA-EG---SLRDALSLTDQA----IASGDGQVSTQAVSAML 248 (250)
T ss_dssp -------------------HTTCCBCHHHHHHHHHHH-TT---CHHHHHHHHHHH----HTTTTSSBCHHHHHHHS
T ss_pred -------------------hcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHHH----HhccCceecHHHHHHHh
Confidence 023578899999898887 22 467777776544 23455689999999875
No 66
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.2e-13 Score=153.42 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=131.7
Q ss_pred ccccccCCCCCCCCcccccHHHHHHHHHhhhc-----------------cCCCcEEEECCCCChHHHHHHHHHHhCCCCe
Q 007444 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAID-----------------REIGGIAISGRRGTAKTVMARGLHAILPPIE 144 (603)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~-----------------p~~~gVLL~GppGTGKT~lArala~~l~~~~ 144 (603)
...+..+++|..|++|+|++..+..|...+.. +...++||+||||||||++|+++++.+.
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--- 102 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--- 102 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT---
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC---
Confidence 34556678899999999999998888432221 1236899999999999999999999873
Q ss_pred eeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccc-----
Q 007444 145 VVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGL----- 219 (603)
Q Consensus 145 ~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gl----- 219 (603)
.+++.+.........++.-.+....... ...++
T Consensus 103 ---------------------------------------~~~i~in~s~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~ 140 (516)
T 1sxj_A 103 ---------------------------------------YDILEQNASDVRSKTLLNAGVKNALDNM---SVVGYFKHNE 140 (516)
T ss_dssp ---------------------------------------CEEEEECTTSCCCHHHHHHTGGGGTTBC---CSTTTTTC--
T ss_pred ---------------------------------------CCEEEEeCCCcchHHHHHHHHHHHhccc---cHHHHHhhhh
Confidence 2222222221111100000000000000 00111
Q ss_pred ---hhcccCceEEecccccCCHH---HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccc
Q 007444 220 ---LAEAHRGVLYIDEINLLDEG---ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINL 293 (603)
Q Consensus 220 ---l~~A~~gIL~IDEi~~l~~~---~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v 293 (603)
.....++||||||++.+... .++.|+..++.... .+++|++.. ....+++ ++|+...+
T Consensus 141 ~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~-------------~iIli~~~~-~~~~l~~--l~~r~~~i 204 (516)
T 1sxj_A 141 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTST-------------PLILICNER-NLPKMRP--FDRVCLDI 204 (516)
T ss_dssp --CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSS-------------CEEEEESCT-TSSTTGG--GTTTSEEE
T ss_pred hhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCC-------------CEEEEEcCC-CCccchh--hHhceEEE
Confidence 12245679999999999764 34788888876431 233433322 3344543 45566677
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~ 373 (603)
.+. +++.+++.+++..... ...+.++++++..|++.+ .+ ..|..++
T Consensus 205 ~f~-~~~~~~~~~~L~~i~~-----------------------------~~~~~i~~~~l~~la~~s-~G---diR~~i~ 250 (516)
T 1sxj_A 205 QFR-RPDANSIKSRLMTIAI-----------------------------REKFKLDPNVIDRLIQTT-RG---DIRQVIN 250 (516)
T ss_dssp ECC-CCCHHHHHHHHHHHHH-----------------------------HHTCCCCTTHHHHHHHHT-TT---CHHHHHH
T ss_pred EeC-CCCHHHHHHHHHHHHH-----------------------------HcCCCCCHHHHHHHHHHc-CC---cHHHHHH
Confidence 887 5677776666542210 113568899988888765 22 4688888
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHc
Q 007444 374 AARVAKCLAALEGREKVNVDDLKKAVELVI 403 (603)
Q Consensus 374 llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (603)
+++.+. . +...|+.+++.+++....
T Consensus 251 ~L~~~~----~-~~~~It~~~v~~~~~~~~ 275 (516)
T 1sxj_A 251 LLSTIS----T-TTKTINHENINEISKAWE 275 (516)
T ss_dssp HHTHHH----H-HSSCCCTTHHHHHHHHHH
T ss_pred HHHHHH----h-cCCCCchHHHHHHHHhhc
Confidence 875442 2 445799999988776443
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=3.8e-14 Score=145.78 Aligned_cols=218 Identities=21% Similarity=0.151 Sum_probs=138.6
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
++..+++|..|++|+|++.++..|.-..-.....++||+||+|||||++|+++++.+....
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~------------------- 66 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN------------------- 66 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-------------------
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-------------------
Confidence 4556678899999999999999886655444455799999999999999999998752100
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
...+|+.+..... .|.-++...+..-. ....+.....+||+|||++.++...++.
T Consensus 67 ------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~~~l~~~~~~~ 121 (319)
T 2chq_A 67 ------------------WRDNFIEMNASDE----RGIDVVRHKIKEFA---RTAPIGGAPFKIIFLDEADALTADAQAA 121 (319)
T ss_dssp ------------------HHHHCEEEETTST----TCTTTSSHHHHHHH---HSCCSSSCCCEEEEEETGGGSCHHHHHT
T ss_pred ------------------ccCCeEEEeCccc----cChHHHHHHHHHHH---hcCCCCCCCceEEEEeCCCcCCHHHHHH
Confidence 0112222222110 01000000000000 0001222456799999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+..+++. +.++.+|+++| ....+.+.|.+|+. .+.+. |++.++..+++....
T Consensus 122 L~~~le~~-------------~~~~~~i~~~~-~~~~l~~~l~sr~~-~i~~~-~~~~~~~~~~l~~~~----------- 174 (319)
T 2chq_A 122 LRRTMEMY-------------SKSCRFILSCN-YVSRIIEPIQSRCA-VFRFK-PVPKEAMKKRLLEIC----------- 174 (319)
T ss_dssp TGGGTSSS-------------SSSEEEEEEES-CGGGSCHHHHTTCE-EEECC-CCCHHHHHHHHHHHH-----------
T ss_pred HHHHHHhc-------------CCCCeEEEEeC-ChhhcchHHHhhCe-EEEec-CCCHHHHHHHHHHHH-----------
Confidence 99888753 23567888888 55678899999997 45776 556665555543210
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
....+.+++++++.|+..+ .+ ..|..+.+++.+. . . ...|+.++|..++
T Consensus 175 ------------------~~~~~~i~~~~l~~l~~~~-~G---~~r~~~~~l~~~~---~-~-~~~i~~~~v~~~~ 223 (319)
T 2chq_A 175 ------------------EKEGVKITEDGLEALIYIS-GG---DFRKAINALQGAA---A-I-GEVVDADTIYQIT 223 (319)
T ss_dssp ------------------HTTCCCBCHHHHHHHHHTT-TT---CHHHHHHHHHHHH---H-S-SSCBCHHHHHHHT
T ss_pred ------------------HHcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHHHH---H-c-CCCCCHHHHHHHH
Confidence 1124678999998887543 33 4577777764432 2 2 3469999998763
No 68
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=8.1e-13 Score=139.14 Aligned_cols=235 Identities=22% Similarity=0.224 Sum_probs=139.0
Q ss_pred cccCCCCCCCCcccccHHHHHHHHHhhhccCC-CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~-~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
...++++..|++++|++.++..|......... +.+||+||+|||||++++++++.+....... ..+...|.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--------~~~~~~~~ 77 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--------ATPCGVCD 77 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--------SSCCSSSH
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--------CCCCcccH
Confidence 34457788999999999999988654433322 3489999999999999999998764211000 00111222
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHH
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~ 243 (603)
.|..... . ....++.+..... .+.-++...+. .. ...+ ......||+|||++.++...++.
T Consensus 78 ~~~~~~~---~-------~~~~~~~~~~~~~----~~~~~~~~l~~-~~-~~~~---~~~~~~vliiDe~~~l~~~~~~~ 138 (373)
T 1jr3_A 78 NCREIEQ---G-------RFVDLIEIDAASR----TKVEDTRDLLD-NV-QYAP---ARGRFKVYLIDEVHMLSRHSFNA 138 (373)
T ss_dssp HHHHHHT---S-------CCSSCEEEETTCS----CCSSCHHHHHH-HT-TSCC---SSSSSEEEEEECGGGSCHHHHHH
T ss_pred HHHHHhc---c-------CCCceEEeccccc----CCHHHHHHHHH-HH-hhcc---ccCCeEEEEEECcchhcHHHHHH
Confidence 2221100 0 0112222221100 00000000000 00 0000 12235699999999999999999
Q ss_pred HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 244 LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+..+++. |.++++|.++| ....+.+.+.+|+ ..+.+. |++.++..+++....
T Consensus 139 Ll~~le~~-------------~~~~~~Il~~~-~~~~l~~~l~sr~-~~i~~~-~l~~~~~~~~l~~~~----------- 191 (373)
T 1jr3_A 139 LLKTLEEP-------------PEHVKFLLATT-DPQKLPVTILSRC-LQFHLK-ALDVEQIRHQLEHIL----------- 191 (373)
T ss_dssp HHHHHHSC-------------CSSEEEEEEES-CGGGSCHHHHTTS-EEEECC-CCCHHHHHHHHHHHH-----------
T ss_pred HHHHHhcC-------------CCceEEEEEeC-ChHhCcHHHHhhe-eEeeCC-CCCHHHHHHHHHHHH-----------
Confidence 99999863 33567888887 5567889999998 444776 556666555544211
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
+ ...+.++++++..|++.+ .+ ..|..+.+++.+. .. +...|+.++|.+++
T Consensus 192 ----------------~--~~~~~~~~~a~~~l~~~~-~G---~~r~~~~~l~~~~---~~-~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 192 ----------------N--EEHIAHEPRALQLLARAA-EG---SLRDALSLTDQAI---AS-GDGQVSTQAVSAML 241 (373)
T ss_dssp ----------------H--HHTCCBCHHHHHHHHHHS-SS---CHHHHHHHHHHHH---HH-TTTCBCHHHHHHHT
T ss_pred ----------------H--HcCCCCCHHHHHHHHHHC-CC---CHHHHHHHHHHHH---Hh-cCCcccHHHHHHHh
Confidence 0 014678999988887765 22 4687777765443 22 34579999998764
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=2.4e-13 Score=157.58 Aligned_cols=234 Identities=19% Similarity=0.213 Sum_probs=145.9
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++-.|+.|+|++..++.+.-........++||+||||||||++|++++..+....+
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v----------------------- 236 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV----------------------- 236 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCS-----------------------
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 356679999999998888865555456788999999999999999999987631000
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcccCceEEecccccC---------C
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---------D 237 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l---------~ 237 (603)
+.......++.+..+... ..+.|.+ +..+.. . -..+..+.++||||||++.+ .
T Consensus 237 ---------~~~~~~~~~~~~~~~~l~~~~~~~g~~--e~~l~~---~--~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~ 300 (758)
T 1r6b_X 237 ---------PEVMADCTIYSLDIGSLLAGTKYRGDF--EKRFKA---L--LKQLEQDTNSILFIDEIHTIIGAGAASGGQ 300 (758)
T ss_dssp ---------CGGGTTCEEEECCCC---CCCCCSSCH--HHHHHH---H--HHHHSSSSCEEEEETTTTTTTTSCCSSSCH
T ss_pred ---------ChhhcCCEEEEEcHHHHhccccccchH--HHHHHH---H--HHHHHhcCCeEEEEechHHHhhcCCCCcch
Confidence 000013334444333221 1222211 110000 0 01112234689999999998 2
Q ss_pred HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHH
Q 007444 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (603)
Q Consensus 238 ~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~ 313 (603)
.+.++.|..+++.+ ++.+|++||+.+ -.++++|.+||.. |.+. +++.+++.+|+.....
T Consensus 301 ~~~~~~L~~~l~~~---------------~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~-~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 301 VDAANLIKPLLSSG---------------KIRVIGSTTYQEFSNIFEKDRALARRFQK-IDIT-EPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHHHHHSSCSSSC---------------CCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---------------CeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcC-CCCHHHHHHHHHHHHH
Confidence 34455555544433 467899999643 2457889999994 6887 5588888888764321
Q ss_pred HHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHH----cCC
Q 007444 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG--CQGHRAELYAARVAKCLAAL----EGR 387 (603)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~--v~s~Ra~i~llr~Ara~Aal----~gr 387 (603)
. . .....+.++++++..++.++...- ..-....+.++..|.+.+.+ .+.
T Consensus 364 ~---------------------~----~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~ 418 (758)
T 1r6b_X 364 K---------------------Y----EAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRK 418 (758)
T ss_dssp H---------------------H----HHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred H---------------------H----HHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccC
Confidence 1 0 012257789999888888765431 11234567777777777666 356
Q ss_pred CCCcHHHHHHHHHHHc
Q 007444 388 EKVNVDDLKKAVELVI 403 (603)
Q Consensus 388 ~~Vt~eDv~~A~~lvl 403 (603)
..|+.+|+.+++....
T Consensus 419 ~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 419 KTVNVADIESVVARIA 434 (758)
T ss_dssp CSCCHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHhc
Confidence 7899999999987653
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.49 E-value=1.5e-13 Score=159.19 Aligned_cols=210 Identities=17% Similarity=0.119 Sum_probs=122.6
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccc
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~ 167 (603)
+.++..|+.|+|+++.++.+......+...+|||+||||||||++|++|+..+....
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~----------------------- 229 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE----------------------- 229 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC-----------------------
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCC-----------------------
Confidence 456778999999999999886655556678899999999999999999999863210
Q ss_pred cccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHH
Q 007444 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (603)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~ 247 (603)
.+....+.+|+.+.. ...+.|.. + ......-+.+....++||||| ...+.++.|+..
T Consensus 230 ---------~p~~l~~~~~~~~~~---g~~~~G~~--e-----~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~ 286 (758)
T 3pxi_A 230 ---------VPEILRDKRVMTLDM---GTKYRGEF--E-----DRLKKVMDEIRQAGNIILFID----AAIDASNILKPS 286 (758)
T ss_dssp ---------SCTTTSSCCEECC---------------C-----TTHHHHHHHHHTCCCCEEEEC----C--------CCC
T ss_pred ---------CChhhcCCeEEEecc---cccccchH--H-----HHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHH
Confidence 000112445555554 11222321 0 000000111223457899999 455677888877
Q ss_pred HHcCceeEeeCCeeeEecCCcEEEEEeCCCCC----CccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHhh
Q 007444 248 LTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (603)
Q Consensus 248 l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg----~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~ 323 (603)
|+.+ .+.+|++||+.+. .++++|.+||.. |.+. +++.+++.+|++.... ..
T Consensus 287 l~~~---------------~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~il~~~~~---~~----- 341 (758)
T 3pxi_A 287 LARG---------------ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVD-QPSVDESIQILQGLRD---RY----- 341 (758)
T ss_dssp TTSS---------------SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECC-CCCHHHHHHHHHHTTT---TS-----
T ss_pred HhcC---------------CEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeC-CCCHHHHHHHHHHHHH---HH-----
Confidence 7755 4679999998774 789999999965 6888 4588888888763211 10
Q ss_pred hhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHHc
Q 007444 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG--CQGHRAELYAARVAKCLAALE 385 (603)
Q Consensus 324 ~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~--v~s~Ra~i~llr~Ara~Aal~ 385 (603)
.....+.++++++..++.++...- ....+..+.++..|.+.+.+.
T Consensus 342 -----------------~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 342 -----------------EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp -----------------GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 011245566666666666654431 112344555555555555444
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=5.3e-13 Score=137.43 Aligned_cols=221 Identities=19% Similarity=0.146 Sum_probs=140.8
Q ss_pred cccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccc
Q 007444 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (603)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~ 162 (603)
.++..+.+|..|++++|++.++..|.-........++||+||+|||||++|+.+++.+....
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~------------------ 70 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS------------------ 70 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG------------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc------------------
Confidence 45556678899999999999999886554444445699999999999999999998752100
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHH
Q 007444 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (603)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~ 242 (603)
...+++.+....... ++. +...+. ..... ...+......+|+|||++.++...++
T Consensus 71 -------------------~~~~~~~~~~~~~~~--~~~--i~~~~~-~~~~~-~~~~~~~~~~viiiDe~~~l~~~~~~ 125 (323)
T 1sxj_B 71 -------------------YADGVLELNASDDRG--IDV--VRNQIK-HFAQK-KLHLPPGKHKIVILDEADSMTAGAQQ 125 (323)
T ss_dssp -------------------HHHHEEEECTTSCCS--HHH--HHTHHH-HHHHB-CCCCCTTCCEEEEEESGGGSCHHHHH
T ss_pred -------------------ccCCEEEecCccccC--hHH--HHHHHH-HHHhc-cccCCCCCceEEEEECcccCCHHHHH
Confidence 011233332221100 010 000000 00000 00111223579999999999999999
Q ss_pred HHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHHHh
Q 007444 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (603)
Q Consensus 243 ~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~~~ 322 (603)
.|+..+++.. .++.+|.++| ....+.+.+.+|+. .+.+. |++.++..+++.....
T Consensus 126 ~L~~~le~~~-------------~~~~~il~~~-~~~~l~~~l~sr~~-~i~~~-~~~~~~~~~~l~~~~~--------- 180 (323)
T 1sxj_B 126 ALRRTMELYS-------------NSTRFAFACN-QSNKIIEPLQSQCA-ILRYS-KLSDEDVLKRLLQIIK--------- 180 (323)
T ss_dssp TTHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHTTSE-EEECC-CCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHhccC-------------CCceEEEEeC-ChhhchhHHHhhce-EEeec-CCCHHHHHHHHHHHHH---------
Confidence 9999998742 2456777888 45677899999987 45776 5677766665542210
Q ss_pred hhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 323 ~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
...+.+++++++.|++++ .+ ..|..+.+++.+.. . ...|+.++|.+++.
T Consensus 181 --------------------~~~~~~~~~~~~~l~~~~-~G---~~r~a~~~l~~~~~---~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 181 --------------------LEDVKYTNDGLEAIIFTA-EG---DMRQAINNLQSTVA---G--HGLVNADNVFKIVD 229 (323)
T ss_dssp --------------------HHTCCBCHHHHHHHHHHH-TT---CHHHHHHHHHHHHH---H--HSSBCHHHHHHHHT
T ss_pred --------------------HcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHHHHh---c--CCCcCHHHHHHHHC
Confidence 014568999999998876 22 46777777754431 1 24699999987753
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.7e-13 Score=144.88 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=96.0
Q ss_pred ceEEecccccCCHHH-HHH-HHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhcccccccCCCCH
Q 007444 226 GVLYIDEINLLDEGI-SNL-LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTF 301 (603)
Q Consensus 226 gIL~IDEi~~l~~~~-~~~-LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l~v~v~~p~~~ 301 (603)
.+|||||++.+.... ++. |..++... .++.+|+++|..+ ..+.+.+++||+..+.+. |++.
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~-~l~~ 199 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFK-PYDA 199 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC-CCCH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHHhcCCCeEEEC-CCCH
Confidence 399999999986542 344 33333321 2678899998543 568899999998887887 6788
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 007444 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (603)
Q Consensus 302 e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~ 381 (603)
++..+|+.... ...+....+++++++.++++++.... ..|..+.+++.|..+
T Consensus 200 ~~~~~il~~~~---------------------------~~~~~~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 200 EQLKFILSKYA---------------------------EYGLIKGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQL 251 (384)
T ss_dssp HHHHHHHHHHH---------------------------HHTSCTTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------------HhhcccCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 87777765321 11233467899999999999874322 579999999888877
Q ss_pred HHHcCCCCCcHHHHHHHHHHHc
Q 007444 382 AALEGREKVNVDDLKKAVELVI 403 (603)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~~lvl 403 (603)
|. +...|+.+||..++..+.
T Consensus 252 a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 252 AS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TT--SSSCCCHHHHHHHHHHHH
T ss_pred hc--CCCccCHHHHHHHHHHHh
Confidence 75 677899999999987763
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.47 E-value=2.9e-14 Score=146.85 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=87.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~ 195 (603)
..++||+||||||||++|+++++.+ +.+|+.+..+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l------------------------------------------~~~~i~v~~~~l~ 73 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM------------------------------------------GINPIMMSAGELE 73 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH------------------------------------------TCCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------------------------------------------CCCEEEEeHHHhh
Confidence 4579999999999999999999987 4566666655555
Q ss_pred ccccccccchhccccCcccccccchhcc-------cCceEEecccccCCH-------------HHHHHHHHHHHcCceeE
Q 007444 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA-------HRGVLYIDEINLLDE-------------GISNLLLNVLTEGVNIV 255 (603)
Q Consensus 196 ~~l~G~ldl~~~l~~g~~~~~~Gll~~A-------~~gIL~IDEi~~l~~-------------~~~~~LL~~l~~g~~~v 255 (603)
+.++|.. +..+ ..++..| .++|||||||+.+.. .+++.|+..|+......
T Consensus 74 ~~~~g~~--~~~i--------~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 143 (293)
T 3t15_A 74 SGNAGEP--AKLI--------RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 143 (293)
T ss_dssp CC---HH--HHHH--------HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC---
T ss_pred hccCchh--HHHH--------HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccc
Confidence 5566531 1111 1233333 578999999987743 46799999998554221
Q ss_pred eeCCe-eeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCCCHHHHHHHHH
Q 007444 256 EREGI-SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 256 ~r~G~-s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~~~e~r~eI~~ 309 (603)
. +|. ......++++|+||| ....++++|++ ||+..+.+ | +.++|.+|++
T Consensus 144 ~-~~~~~~~~~~~v~vI~ttN-~~~~ld~al~R~~R~d~~i~~--P-~~~~r~~Il~ 195 (293)
T 3t15_A 144 L-PGMYNKQENARVPIIVTGN-DFSTLYAPLIRDGRMEKFYWA--P-TREDRIGVCT 195 (293)
T ss_dssp ---------CCCCCCEEEECS-SCCC--CHHHHHHHEEEEEEC--C-CHHHHHHHHH
T ss_pred c-ccccccccCCCcEEEEecC-CcccCCHHHhCCCCCceeEeC--c-CHHHHHHHHH
Confidence 1 111 112234789999999 66778899995 89887653 4 8999999976
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.1e-12 Score=138.09 Aligned_cols=242 Identities=16% Similarity=0.077 Sum_probs=145.1
Q ss_pred CCCCcccccHHHHHHHHHhhh----ccCCCcEEEECCCCChHHHHHHHHHHhCCCCe--eeccccccCCCCC-CCccccc
Q 007444 92 FPLAAVVGQDAIKTALLLGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTC-PDEWEDG 164 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav----~p~~~gVLL~GppGTGKT~lArala~~l~~~~--~~~~~~~n~~~~~-~~~~~~~ 164 (603)
+.++.++|++..+..|.-... ......++|+||+|||||++++.++..+.... ......++|.... +......
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 455889999999888854332 23356799999999999999999998763100 0011112221000 0000000
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc-cCceEEecccccCC----HH
Q 007444 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD----EG 239 (603)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A-~~gIL~IDEi~~l~----~~ 239 (603)
+...+ ..++ ...+.+...++.. . ...+... ...+|+|||++.+. ..
T Consensus 97 i~~~l-------------~~~~--~~~~~~~~~~~~~-------------l-~~~l~~~~~~~vlilDE~~~l~~~~~~~ 147 (386)
T 2qby_A 97 LLESL-------------DVKV--PFTGLSIAELYRR-------------L-VKAVRDYGSQVVIVLDEIDAFVKKYNDD 147 (386)
T ss_dssp HTTTT-------------SCCC--CSSSCCHHHHHHH-------------H-HHHHHTCCSCEEEEEETHHHHHHSSCST
T ss_pred HHHHh-------------CCCC--CCCCCCHHHHHHH-------------H-HHHHhccCCeEEEEEcChhhhhccCcCH
Confidence 00000 0000 0000000000000 0 0011111 14589999999885 56
Q ss_pred HHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCccHHHHhhhcc-cccccCCCCHHHHHHHHHHHHHHHh
Q 007444 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQE 316 (603)
Q Consensus 240 ~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~~~LldRf~l-~v~v~~p~~~e~r~eI~~~~~~f~~ 316 (603)
.+..|+..++... ..++.+|+++|..+ ..+.+.+.+||.. .+.+. |++.++..+++....
T Consensus 148 ~l~~l~~~~~~~~------------~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~-~l~~~~~~~il~~~~---- 210 (386)
T 2qby_A 148 ILYKLSRINSEVN------------KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP-PYNAEELEDILTKRA---- 210 (386)
T ss_dssp HHHHHHHHHHSCC------------C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC-CCCHHHHHHHHHHHH----
T ss_pred HHHHHhhchhhcC------------CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC-CCCHHHHHHHHHHHH----
Confidence 7778888776421 12567888888433 4577889999965 56676 677777777665321
Q ss_pred hhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 007444 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (603)
........+++++++++..+++.... ..|..+.+++.+..+|...|...|+.+|+.
T Consensus 211 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 211 -----------------------QMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp -----------------------HHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred -----------------------HhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 11233467999999999999875322 468899999999888888899999999999
Q ss_pred HHHHHHc
Q 007444 397 KAVELVI 403 (603)
Q Consensus 397 ~A~~lvl 403 (603)
.|+..+.
T Consensus 267 ~a~~~~~ 273 (386)
T 2qby_A 267 MAKEEIE 273 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987664
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=4.2e-13 Score=140.69 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=138.9
Q ss_pred CccccccCCCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
.+.++..+++|..|++++|++.++..|....-.....++||+||+|||||++++++++.+....
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~---------------- 74 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN---------------- 74 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS----------------
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC----------------
Confidence 3566777889999999999999999886654433445699999999999999999999863100
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHH
Q 007444 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (603)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~ 240 (603)
+ ...+..+.... . .|.-++...+. . ..+.+........|++|||++.+....
T Consensus 75 ~---------------------~~~~~~~~~~~--~--~~~~~ir~~i~--~-~~~~~~~~~~~~~viiiDe~~~l~~~~ 126 (340)
T 1sxj_C 75 Y---------------------SNMVLELNASD--D--RGIDVVRNQIK--D-FASTRQIFSKGFKLIILDEADAMTNAA 126 (340)
T ss_dssp H---------------------HHHEEEECTTS--C--CSHHHHHTHHH--H-HHHBCCSSSCSCEEEEETTGGGSCHHH
T ss_pred c---------------------cceEEEEcCcc--c--ccHHHHHHHHH--H-HHhhcccCCCCceEEEEeCCCCCCHHH
Confidence 0 01122222111 0 01000000000 0 000000111235699999999999999
Q ss_pred HHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHHHhhhHH
Q 007444 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (603)
Q Consensus 241 ~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f~~~~~~ 320 (603)
++.|+..+++.. ....+|.++| ....+.+.+..|+.. +.+. |.+.++..+++....
T Consensus 127 ~~~L~~~le~~~-------------~~~~~il~~n-~~~~i~~~i~sR~~~-~~~~-~l~~~~~~~~l~~~~-------- 182 (340)
T 1sxj_C 127 QNALRRVIERYT-------------KNTRFCVLAN-YAHKLTPALLSQCTR-FRFQ-PLPQEAIERRIANVL-------- 182 (340)
T ss_dssp HHHHHHHHHHTT-------------TTEEEEEEES-CGGGSCHHHHTTSEE-EECC-CCCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhcCC-------------CCeEEEEEec-CccccchhHHhhcee-Eecc-CCCHHHHHHHHHHHH--------
Confidence 999999998753 2445677778 456778999999874 4665 455554444332110
Q ss_pred HhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007444 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (603)
Q Consensus 321 ~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~ 399 (603)
....+.+++++++.++.++ +. ..|..+.+++.+...+.-.|...|+.+++.+++
T Consensus 183 ---------------------~~~~~~i~~~~~~~i~~~s---~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 183 ---------------------VHEKLKLSPNAEKALIELS---NG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp ---------------------HTTTCCBCHHHHHHHHHHH---TT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred ---------------------HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHh
Confidence 0124679999999888776 22 467777776544322111123469999987763
No 76
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.42 E-value=1.4e-13 Score=139.62 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=116.5
Q ss_pred CCcccccHHHHHHHH------Hhhh----ccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccc
Q 007444 94 LAAVVGQDAIKTALL------LGAI----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (603)
Q Consensus 94 f~~IvGq~~~k~aL~------laav----~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~ 163 (603)
...++|+++....+. ...+ .+...+|||+||||||||++|++++..+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------------------- 88 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------------------- 88 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----------------------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------------------
Confidence 445777766544332 1122 3345679999999999999999999875
Q ss_pred cccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhc---ccCceEEecccccC----
Q 007444 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLL---- 236 (603)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~---A~~gIL~IDEi~~l---- 236 (603)
+.+|+.+... +.++|...... .+ ....++.. ...+|||||||+.+
T Consensus 89 -------------------~~~~~~i~~~---~~~~g~~~~~~---~~---~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 89 -------------------NFPFIKICSP---DKMIGFSETAK---CQ---AMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp -------------------TCSEEEEECG---GGCTTCCHHHH---HH---HHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred -------------------CCCEEEEeCH---HHhcCCchHHH---HH---HHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 3455555322 24455311000 00 00112222 34689999999987
Q ss_pred ------CHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccH-HHHhhhcccccccCCCCHHHHHHHHH
Q 007444 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 237 ------~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~-~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
...+++.|+..++... ..+.++++|+|+|. ...+++ .+.+||...+.++ ....|.+|..
T Consensus 141 ~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn~-~~~l~~~~l~~rf~~~i~~p---~l~~r~~i~~ 206 (272)
T 1d2n_A 141 PIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSR-KDVLQEMEMLNAFSTTIHVP---NIATGEQLLE 206 (272)
T ss_dssp TTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESC-HHHHHHTTCTTTSSEEEECC---CEEEHHHHHH
T ss_pred CCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecCC-hhhcchhhhhcccceEEcCC---CccHHHHHHH
Confidence 4555666666554211 01235789999994 334444 5778998887764 2333444433
Q ss_pred HHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHHcCCC
Q 007444 310 IATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG-CQGHRAELYAARVAKCLAALEGRE 388 (603)
Q Consensus 310 ~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~-v~s~Ra~i~llr~Ara~Aal~gr~ 388 (603)
.... ...++++.+..+++.+.... ..+.|..+++++.|...+ .
T Consensus 207 i~~~-------------------------------~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~ 250 (272)
T 1d2n_A 207 ALEL-------------------------------LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----P 250 (272)
T ss_dssp HHHH-------------------------------HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----G
T ss_pred HHHh-------------------------------cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----h
Confidence 2110 12468888888887764321 113688888887665432 2
Q ss_pred CCcHHHHHHHH
Q 007444 389 KVNVDDLKKAV 399 (603)
Q Consensus 389 ~Vt~eDv~~A~ 399 (603)
....+++..++
T Consensus 251 ~~~~~~~~~~l 261 (272)
T 1d2n_A 251 EYRVRKFLALL 261 (272)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=5.8e-12 Score=131.99 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=128.1
Q ss_pred ccccCCCCCCCCcccccHHHHHHHHHhh-hccCCCcEEEECCCCChHHHHHHHHHHh-CCCCe-e--eccccccCCCCCC
Q 007444 84 QDSYGRQFFPLAAVVGQDAIKTALLLGA-IDREIGGIAISGRRGTAKTVMARGLHAI-LPPIE-V--VVGSIANADPTCP 158 (603)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~laa-v~p~~~gVLL~GppGTGKT~lArala~~-l~~~~-~--~~~~~~n~~~~~~ 158 (603)
.+..+++|..|++++|++.++..|.-.. ......+++|+||+||||||+++++++. +.+-. . +.+..++. +
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~----~ 78 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT----A 78 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc----c
Confidence 4566789999999999999999886654 3333445999999999999999999994 43210 0 00000000 0
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccccccccc---chhcccc--Cccccc-----ccchhcccCceE
Q 007444 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD---VEESVKT--GTTVFQ-----PGLLAEAHRGVL 228 (603)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ld---l~~~l~~--g~~~~~-----~Gll~~A~~gIL 228 (603)
...|..|.. .....++.+..... |..+ +...+.. ....+. +|+ ..+..||
T Consensus 79 ~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l--~~~~~vl 138 (354)
T 1sxj_E 79 SNRKLELNV-------------VSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGL--AHRYKCV 138 (354)
T ss_dssp -------CC-------------EECSSEEEECCC---------CCHHHHHHHHHHHTTTTC--------------CCEEE
T ss_pred ccccceeee-------------ecccceEEecHhhc-----CCcchHHHHHHHHHHHHhcccccccccccc--CCCCeEE
Confidence 000000000 00122333322110 1000 0000000 000000 110 2245699
Q ss_pred EecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 229 YIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 229 ~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
+|||++.++...++.|+..+++.. .+..+|.++| ....+.+.+.+|+ ..+.+. |++.++..+++
T Consensus 139 ilDE~~~L~~~~~~~L~~~le~~~-------------~~~~~Il~t~-~~~~l~~~l~sR~-~~~~~~-~~~~~~~~~~l 202 (354)
T 1sxj_E 139 IINEANSLTKDAQAALRRTMEKYS-------------KNIRLIMVCD-SMSPIIAPIKSQC-LLIRCP-APSDSEISTIL 202 (354)
T ss_dssp EEECTTSSCHHHHHHHHHHHHHST-------------TTEEEEEEES-CSCSSCHHHHTTS-EEEECC-CCCHHHHHHHH
T ss_pred EEeCccccCHHHHHHHHHHHHhhc-------------CCCEEEEEeC-CHHHHHHHHHhhc-eEEecC-CcCHHHHHHHH
Confidence 999999999999999999998642 2456777777 5556889999999 555776 56777666655
Q ss_pred HHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007444 309 GIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAARVAK 379 (603)
Q Consensus 309 ~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is-~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ar 379 (603)
..... + ..+.++ +++++.|+..+ .+ +.|..+.++..+.
T Consensus 203 ~~~~~--------------------------~---~~~~~~~~~~l~~i~~~~-~G---~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 203 SDVVT--------------------------N---ERIQLETKDILKRIAQAS-NG---NLRVSLLMLESMA 241 (354)
T ss_dssp HHHHH--------------------------H---HTCEECCSHHHHHHHHHH-TT---CHHHHHHHHTHHH
T ss_pred HHHHH--------------------------H---cCCCCCcHHHHHHHHHHc-CC---CHHHHHHHHHHHH
Confidence 43211 0 135688 88888888776 22 5688888886544
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1e-12 Score=154.16 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=98.3
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++..|+.|+|+++.++.+.-........++||+||||||||++|++++..+....
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~------------------------ 219 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGD------------------------ 219 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTC------------------------
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCC------------------------
Confidence 45778999999999888886555555567899999999999999999998763100
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcc----cCceEEecccccCC-----
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD----- 237 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A----~~gIL~IDEi~~l~----- 237 (603)
.+....+.+++.++.+... ..+.|.. +..+ ..++..+ ...||||||++.+.
T Consensus 220 --------~p~~l~~~~~~~l~~~~l~~g~~~~g~~--~~~l--------~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 281 (854)
T 1qvr_A 220 --------VPEGLKGKRIVSLQMGSLLAGAKYRGEF--EERL--------KAVIQEVVQSQGEVILFIDELHTVVGAGKA 281 (854)
T ss_dssp --------SCTTSTTCEEEEECC-----------CH--HHHH--------HHHHHHHHTTCSSEEEEECCC---------
T ss_pred --------CchhhcCCeEEEeehHHhhccCccchHH--HHHH--------HHHHHHHHhcCCCeEEEEecHHHHhccCCc
Confidence 0000124556666554322 1222211 0000 1222222 23599999999996
Q ss_pred ---HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhcccccccCCCCHHHHHHHHHH
Q 007444 238 ---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (603)
Q Consensus 238 ---~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~ 310 (603)
.+..+.|..+++.+. +.+|+++|+.+. .++++|.+||.. |.++ +++.+++.+|++.
T Consensus 282 ~g~~~~~~~L~~~l~~~~---------------i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~-~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 282 EGAVDAGNMLKPALARGE---------------LRLIGATTLDEYREIEKDPALERRFQP-VYVD-EPTVEETISILRG 343 (854)
T ss_dssp ----------HHHHHTTC---------------CCEEEEECHHHHHHHTTCTTTCSCCCC-EEEC-CCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCC---------------eEEEEecCchHHhhhccCHHHHhCCce-EEeC-CCCHHHHHHHHHh
Confidence 566778888887653 568888886553 578999999997 6888 5578888888764
No 79
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.37 E-value=2.4e-13 Score=128.08 Aligned_cols=160 Identities=22% Similarity=0.280 Sum_probs=98.9
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++..|+.++|+++.+..+.-........++||+||+|||||+++++++..+..... +
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~------------~---------- 73 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV------------P---------- 73 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS------------C----------
T ss_pred HhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCC------------c----------
Confidence 346779999999998888866555445678999999999999999999987631000 0
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccch---hccc-CceEEecccccCC-----
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLL---AEAH-RGVLYIDEINLLD----- 237 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll---~~A~-~gIL~IDEi~~l~----- 237 (603)
......+++.+...... ....|.. ...+ ..++ ...+ +.||||||++.+.
T Consensus 74 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~ 133 (195)
T 1jbk_A 74 ----------EGLKGRRVLALDMGALVAGAKYRGEF--EERL--------KGVLNDLAKQEGNVILFIDELHTMVGAGKA 133 (195)
T ss_dssp ----------GGGTTCEEEEECHHHHHTTTCSHHHH--HHHH--------HHHHHHHHHSTTTEEEEEETGGGGTT----
T ss_pred ----------hhhcCCcEEEeeHHHHhccCCccccH--HHHH--------HHHHHHHhhcCCCeEEEEeCHHHHhccCcc
Confidence 00012333333321110 1111110 0000 0111 1223 3489999999995
Q ss_pred ---HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHH
Q 007444 238 ---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (603)
Q Consensus 238 ---~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI 307 (603)
..+++.|...++.+ ++.+|+++|..+ ..++++|++||.. +.+. +++.+++.+|
T Consensus 134 ~~~~~~~~~l~~~~~~~---------------~~~~i~~~~~~~~~~~~~~~~~l~~r~~~-i~~~-~p~~~~~~~i 193 (195)
T 1jbk_A 134 DGAMDAGNMLKPALARG---------------ELHCVGATTLDEYRQYIEKDAALERRFQK-VFVA-EPSVEDTIAI 193 (195)
T ss_dssp --CCCCHHHHHHHHHTT---------------SCCEEEEECHHHHHHHTTTCHHHHTTEEE-EECC-CCCHHHHHTT
T ss_pred cchHHHHHHHHHhhccC---------------CeEEEEeCCHHHHHHHHhcCHHHHHHhce-eecC-CCCHHHHHHH
Confidence 44577777777654 456788888543 2578999999984 5787 5577777665
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.35 E-value=7.2e-14 Score=162.72 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=110.9
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhcc-------------CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCC
Q 007444 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (603)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~laav~p-------------~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~ 154 (603)
..+.+.|++|+|++.+|..|.-....| ...++||+||||||||++|++|+..+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~-------------- 535 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-------------- 535 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH--------------
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh--------------
Confidence 346788999999999999986543321 34679999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEec
Q 007444 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (603)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~ID 231 (603)
+.+|+.+......+.++|.. ++.+ ..++..+ ..+|||||
T Consensus 536 ----------------------------~~~~i~v~~~~l~~~~~g~~--~~~i--------~~~f~~a~~~~p~vl~iD 577 (806)
T 1ypw_A 536 ----------------------------QANFISIKGPELLTMWFGES--EANV--------REIFDKARQAAPCVLFFD 577 (806)
T ss_dssp ----------------------------TCCCCCCCCSSSTTCCTTTS--SHHH--------HHHHHHHHHHCSBCCCCS
T ss_pred ----------------------------CCCEEEEechHhhhhhcCcc--HHHH--------HHHHHHHHhcCCeEEEEE
Confidence 34555666555556666642 1111 1223333 34799999
Q ss_pred ccccCC--------------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccc
Q 007444 232 EINLLD--------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSA 295 (603)
Q Consensus 232 Ei~~l~--------------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v 295 (603)
||+.+. ..+++.||..|+... ...+++||+||| ....|+++|++ ||+..|.+
T Consensus 578 Eid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~vI~tTN-~~~~ld~allrpgRf~~~i~~ 645 (806)
T 1ypw_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATN-RPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp SHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCB-SCGGGSCTTSSGGGTTSCCCC
T ss_pred ChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCeEEEEecC-CcccCCHHHhCccccCceeec
Confidence 999862 345667776665332 113688999999 66778999999 99999999
Q ss_pred cCCCCHHHHHHHHHH
Q 007444 296 DLPMTFEDRVAAVGI 310 (603)
Q Consensus 296 ~~p~~~e~r~eI~~~ 310 (603)
+. ++.++|.+|++.
T Consensus 646 ~~-p~~~~r~~Il~~ 659 (806)
T 1ypw_A 646 PL-PDEKSRVAILKA 659 (806)
T ss_dssp CC-CCCSHHHHHTTT
T ss_pred CC-CCHHHHHHHHHH
Confidence 85 588888888663
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.34 E-value=4e-13 Score=126.49 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=96.0
Q ss_pred CCCCCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccc
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 168 (603)
.++..|++++|++..+..+.-........+|||+||+|||||++++.++..+..... +.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~------------~~--------- 74 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDV------------PD--------- 74 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCS------------CT---------
T ss_pred HhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCC------------cc---------
Confidence 456789999999998888866555555678999999999999999999987632000 00
Q ss_pred ccccccccccccccCCCeEEcCCCCcc--ccccccccchhccccCcccccccchhcc-cCceEEecccccCC--------
Q 007444 169 AEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD-------- 237 (603)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~~--~~l~G~ldl~~~l~~g~~~~~~Gll~~A-~~gIL~IDEi~~l~-------- 237 (603)
.....+++.+...... ....|.. ...+. . .-..+... .+.+|||||++.+.
T Consensus 75 -----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~-~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~ 136 (187)
T 2p65_A 75 -----------SLKGRKLVSLDLSSLIAGAKYRGDF--EERLK----S-ILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG 136 (187)
T ss_dssp -----------TTTTCEEEEECHHHHHHHCCSHHHH--HHHHH----H-HHHHHHHTTTSEEEEETTGGGGSSSSSSCTT
T ss_pred -----------hhcCCeEEEEeHHHhhcCCCchhHH--HHHHH----H-HHHHHHhcCCceEEEEeCHHHhccccccccc
Confidence 0012233333211100 0011110 00000 0 00111222 23599999999997
Q ss_pred -HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCC
Q 007444 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLP 298 (603)
Q Consensus 238 -~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p 298 (603)
..+++.|+..++.+ ++.+|+++|..+ ..++++|++||.. +.+..|
T Consensus 137 ~~~~~~~l~~~~~~~---------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p 186 (187)
T 2p65_A 137 ALDAGNILKPMLARG---------------ELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQP 186 (187)
T ss_dssp SCCTHHHHHHHHHTT---------------CSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSC
T ss_pred chHHHHHHHHHHhcC---------------CeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCC
Confidence 56778888877654 467899999654 3578999999996 577644
No 82
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.2e-11 Score=128.49 Aligned_cols=163 Identities=7% Similarity=-0.024 Sum_probs=95.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhcc-cccccCCCC
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAI-NLSADLPMT 300 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~l-~v~v~~p~~ 300 (603)
..|+||||++.+. .++.|+.+++-.. . ...++++|+.+|.-+. .|.+.+.+||.. .|.+. |++
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~--~--------~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~-pYt 199 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWIS--S--------KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLN-KVD 199 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHH--C--------SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC-CCC
T ss_pred ceEEEEecHHHhh--cchHHHHHHhccc--c--------cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeC-CCC
Confidence 3599999999996 3455555543111 0 0126789999985432 356677899985 45555 899
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHhh-HHHHHHHH-HHHH-h---c--cccCCCHHHHHHHHHHHHcCCCCchhHHH
Q 007444 301 FEDRVAAVGIATQFQERSNEVFKMVEEET-DLAKTQII-LARE-Y---L--KDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (603)
Q Consensus 301 ~e~r~eI~~~~~~f~~~~~~~~~~~~~~~-~~l~~~I~-~ar~-~---l--~~v~is~~~l~~L~~~a~~~~v~s~Ra~i 372 (603)
.++..+|++.++...... .| ..+.... ..+...+. ...+ . + -.+.++++++++++..+...+. ..|..+
T Consensus 200 ~~el~~Il~~Rl~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al 276 (318)
T 3te6_A 200 KNELQQMIITRLKSLLKP-FH-VKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAF 276 (318)
T ss_dssp HHHHHHHHHHHHHHHCCC-EE-EEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHH
T ss_pred HHHHHHHHHHHHHhhhcc-cc-ccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHH
Confidence 999999998765432110 00 0000000 00000000 0000 0 0 1236899999999987655444 579999
Q ss_pred HHHHHHHHHHHHc---------CCCCCcHHHHHHHHHHHc
Q 007444 373 YAARVAKCLAALE---------GREKVNVDDLKKAVELVI 403 (603)
Q Consensus 373 ~llr~Ara~Aal~---------gr~~Vt~eDv~~A~~lvl 403 (603)
.+++.|-.+|..+ |...||.+++..+..-++
T Consensus 277 ~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 277 KICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 9999999998652 334577777766655443
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.23 E-value=9.9e-12 Score=144.75 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=105.2
Q ss_pred CCCCCCCcccccHHHHHHHHHhhh----c---------cCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCC
Q 007444 89 RQFFPLAAVVGQDAIKTALLLGAI----D---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (603)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~laav----~---------p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~ 155 (603)
...+.|++|+|++.+++.|.-... . +...+|||+||||||||++|++|+..++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-------------- 263 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-------------- 263 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--------------
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------------
Confidence 456889999999988887732221 1 2345799999999999999999999863
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcc---cCceEEecc
Q 007444 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (603)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A---~~gIL~IDE 232 (603)
.+|+.+........+.|.. +.. ...++..+ ..++|||||
T Consensus 264 ----------------------------~~~i~v~~~~l~~~~~g~~--~~~--------l~~vf~~a~~~~p~il~iDE 305 (806)
T 1ypw_A 264 ----------------------------AFFFLINGPEIMSKLAGES--ESN--------LRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp ----------------------------CEEEEEEHHHHSSSSTTHH--HHH--------HHHHHHHHHHHCSEEEEEES
T ss_pred ----------------------------CcEEEEEchHhhhhhhhhH--HHH--------HHHHHHHHHhcCCcEEEecc
Confidence 3444443322222233321 000 01122222 357999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHh--hhcccccccCCC
Q 007444 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (603)
Q Consensus 233 i~~l~-----------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~Lld--Rf~l~v~v~~p~ 299 (603)
|+.+. ..+++.|+..++... ...++++|++|| ....+++.+.. ||+..+.+.. +
T Consensus 306 id~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn-~~~~ld~al~r~gRf~~~i~i~~-p 372 (806)
T 1ypw_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATN-RPNSIDPALRRFGRFDREVDIGI-P 372 (806)
T ss_dssp GGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECS-CTTTSCTTTTSTTSSCEEECCCC-C
T ss_pred HHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccC-CchhcCHHHhcccccccccccCC-C
Confidence 98763 346788888887432 123688999999 55667888877 9988888884 5
Q ss_pred CHHHHHHHHHH
Q 007444 300 TFEDRVAAVGI 310 (603)
Q Consensus 300 ~~e~r~eI~~~ 310 (603)
+.++|.+|+..
T Consensus 373 ~~~~r~~il~~ 383 (806)
T 1ypw_A 373 DATGRLEILQI 383 (806)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888888763
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.02 E-value=1.5e-09 Score=115.54 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=92.9
Q ss_pred CceEEecccccCC------HHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC--CCcc---HHHHhhhcccc
Q 007444 225 RGVLYIDEINLLD------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVR---EHLLDRIAINL 293 (603)
Q Consensus 225 ~gIL~IDEi~~l~------~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e--g~L~---~~LldRf~l~v 293 (603)
.-+|+|||++.+. .+.+..|+..+.... .++ ...++.+|+++|..+ ..+. +.+.++|...+
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~----~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i 210 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP----SRD----GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKL 210 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC----CTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEE
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc----cCC----CCceEEEEEEeccccHHHHHhhhcchhhhhcCCee
Confidence 3489999999985 367777777776421 001 012567887776221 1234 56667777666
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC--CCchhHH
Q 007444 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG--CQGHRAE 371 (603)
Q Consensus 294 ~v~~p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~--v~s~Ra~ 371 (603)
.+. |.+.++..+++..... .......++++++..+...+.... ....|..
T Consensus 211 ~l~-~l~~~e~~~ll~~~~~---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~ 262 (412)
T 1w5s_A 211 HLP-AYKSRELYTILEQRAE---------------------------LGLRDTVWEPRHLELISDVYGEDKGGDGSARRA 262 (412)
T ss_dssp ECC-CCCHHHHHHHHHHHHH---------------------------HHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHH
T ss_pred eeC-CCCHHHHHHHHHHHHH---------------------------hcCCCCCCChHHHHHHHHHHHHhccCCCcHHHH
Confidence 666 6777766666543211 112234588999999988876421 0146888
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 372 LYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 372 i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
+.+++.+...|...+...|+.+++..++...
T Consensus 263 ~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 263 IVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 8888888888888888899999999887654
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.01 E-value=7e-09 Score=108.45 Aligned_cols=170 Identities=13% Similarity=0.042 Sum_probs=96.0
Q ss_pred ccHHHHHHHHHhhhccCCCc-EEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~g-VLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~ 177 (603)
-++++++.|.-+..+....| +||+||+|||||++|+++++.+....... ..+...|..|......
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~--------~~~c~~c~~c~~~~~~------ 71 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG--------HKSCGHCRGCQLMQAG------ 71 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT--------TBCCSCSHHHHHHHHT------
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC--------CCCCCCCHHHHHHhcC------
Confidence 45666666655443333344 99999999999999999998763111000 1122234444321100
Q ss_pred cccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEee
Q 007444 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (603)
Q Consensus 178 ~~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r 257 (603)
....+..+..... ..-.|.-++. .+.... ...| ..+...|++|||++.|+.+.++.|+..+++..
T Consensus 72 ----~~~d~~~~~~~~~-~~~~~i~~ir-~l~~~~-~~~~---~~~~~kvviIdead~l~~~a~naLLk~lEep~----- 136 (334)
T 1a5t_A 72 ----THPDYYTLAPEKG-KNTLGVDAVR-EVTEKL-NEHA---RLGGAKVVWVTDAALLTDAAANALLKTLEEPP----- 136 (334)
T ss_dssp ----CCTTEEEECCCTT-CSSBCHHHHH-HHHHHT-TSCC---TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-----
T ss_pred ----CCCCEEEEecccc-CCCCCHHHHH-HHHHHH-hhcc---ccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-----
Confidence 1233444432200 0011110010 010000 0001 12345699999999999999999999998642
Q ss_pred CCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHH
Q 007444 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (603)
Q Consensus 258 ~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~ 308 (603)
.++++|.++| ....+.+.+.+|+.. +.+. |++.++..+++
T Consensus 137 --------~~~~~Il~t~-~~~~l~~ti~SRc~~-~~~~-~~~~~~~~~~L 176 (334)
T 1a5t_A 137 --------AETWFFLATR-EPERLLATLRSRCRL-HYLA-PPPEQYAVTWL 176 (334)
T ss_dssp --------TTEEEEEEES-CGGGSCHHHHTTSEE-EECC-CCCHHHHHHHH
T ss_pred --------CCeEEEEEeC-ChHhCcHHHhhccee-eeCC-CCCHHHHHHHH
Confidence 3566777777 566788999999864 4776 56666555443
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.92 E-value=3.5e-09 Score=135.22 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=65.3
Q ss_pred CceEEecccccCCH------HHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCC----CCccHHHHhhhccccc
Q 007444 225 RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLS 294 (603)
Q Consensus 225 ~gIL~IDEi~~l~~------~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~ 294 (603)
..||||||||.... ..++.|.+.++.|.....+.+....+ .++.+||||||.. ..+++.|++||.+ +.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~v-i~ 1414 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAI-LY 1414 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEE-EE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeE-EE
Confidence 46999999998643 37888888999877655555555555 6899999999874 3689999999955 48
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 007444 295 ADLPMTFEDRVAAVGIAT 312 (603)
Q Consensus 295 v~~p~~~e~r~eI~~~~~ 312 (603)
++. ++.+.+..|+....
T Consensus 1415 i~~-P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGY-PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCC-CTTTHHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHHH
Confidence 885 47888888887554
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.86 E-value=6e-08 Score=124.05 Aligned_cols=139 Identities=19% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC--C
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG--V 193 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~--~ 193 (603)
..|+++.||+|||||++++.+++.++. +++.++++ +
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~------------------------------------------~~v~~nc~e~l 682 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR------------------------------------------VVVVFNCDDSF 682 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC------------------------------------------CCEEEETTSSC
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC------------------------------------------cEEEEECCCCC
Confidence 468999999999999999999999853 23333222 2
Q ss_pred ccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHH-------HHHHHcCceeEeeCCeeeEecC
Q 007444 194 TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPC 266 (603)
Q Consensus 194 ~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~L-------L~~l~~g~~~v~r~G~s~~~p~ 266 (603)
....+ |.+ -.|+. ..|.++++||+|+++.+++..| +.++.++...+.-+|..+..+.
T Consensus 683 d~~~l-g~~-------------~~g~~--~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~ 746 (2695)
T 4akg_A 683 DYQVL-SRL-------------LVGIT--QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSP 746 (2695)
T ss_dssp CHHHH-HHH-------------HHHHH--HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCT
T ss_pred ChhHh-hHH-------------HHHHH--hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCC
Confidence 11111 210 01111 1367999999999999998888 6677777777777898899888
Q ss_pred CcEEEEEeCCCC---CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 267 KPLLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 267 ~~~lIattNp~e---g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.|.+++||||.- .+|++.|.+||-. |.+..| +.+...+|+-....|
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~-v~m~~P-d~~~i~ei~l~s~Gf 795 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKKSFRE-FSMKSP-QSGTIAEMILQIMGF 795 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHTTEEE-EECCCC-CHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCccCcccccHHHHhheEE-EEeeCC-CHHHHHHHHHHhcCC
Confidence 999999999853 3689999999964 477754 888777776544443
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.8e-08 Score=104.14 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCccccccccccccccccccc
Q 007444 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (603)
Q Consensus 99 Gq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 178 (603)
||+++...|.-..-+....++||+||+|+|||++|+++++.+. .|..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~----------~~~~----------------------- 47 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE----------KFPP----------------------- 47 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH----------TSCC-----------------------
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc----------hhhc-----------------------
Confidence 6788888776544433344699999999999999999997421 1210
Q ss_pred ccccCCCeEEcCCCCccccccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHHcCceeEeeC
Q 007444 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (603)
Q Consensus 179 ~~~~~~pfv~l~~~~~~~~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~ 258 (603)
....|+.+...- .-.|.-++.. +.... ...| ..+...|+||||++.|....++.||..|++..
T Consensus 48 ---~~~d~~~l~~~~---~~~~id~ir~-li~~~-~~~p---~~~~~kvviIdead~lt~~a~naLLk~LEep~------ 110 (305)
T 2gno_A 48 ---KASDVLEIDPEG---ENIGIDDIRT-IKDFL-NYSP---ELYTRKYVIVHDCERMTQQAANAFLKALEEPP------ 110 (305)
T ss_dssp ---CTTTEEEECCSS---SCBCHHHHHH-HHHHH-TSCC---SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC------
T ss_pred ---cCCCEEEEcCCc---CCCCHHHHHH-HHHHH-hhcc---ccCCceEEEeccHHHhCHHHHHHHHHHHhCCC------
Confidence 023444444321 0111101111 11000 0111 11235699999999999999999999999752
Q ss_pred CeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccCCCCHHHHHHHHHHH
Q 007444 259 GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (603)
Q Consensus 259 G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~ 311 (603)
.+.++|.++| ....+.+.+.+| .+.+. |++.++..+.+...
T Consensus 111 -------~~t~fIl~t~-~~~kl~~tI~SR---~~~f~-~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 111 -------EYAVIVLNTR-RWHYLLPTIKSR---VFRVV-VNVPKEFRDLVKEK 151 (305)
T ss_dssp -------TTEEEEEEES-CGGGSCHHHHTT---SEEEE-CCCCHHHHHHHHHH
T ss_pred -------CCeEEEEEEC-ChHhChHHHHce---eEeCC-CCCHHHHHHHHHHH
Confidence 3456666666 556889999999 55777 55666666665543
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.65 E-value=1.4e-08 Score=95.96 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=36.1
Q ss_pred CCCCCCCccccc----HHHHHHHHHhh--h-ccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 89 RQFFPLAAVVGQ----DAIKTALLLGA--I-DREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 89 ~~~~~f~~IvGq----~~~k~aL~laa--v-~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.++.+|+++++. ..++..+...+ . .+...+++|+||+|||||+|+++++..+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789888863 33333332111 1 1245679999999999999999999886
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.64 E-value=6.1e-08 Score=124.65 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=96.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEE--cCCC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQ--IPLG 192 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~--l~~~ 192 (603)
...+|||.||+|||||+++..+...++. .+++. .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~-----------------------------------------~~~~~infS~~ 1341 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD-----------------------------------------FEVVSLNFSSA 1341 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT-----------------------------------------EEEEEECCCTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC-----------------------------------------CceEEEEeeCC
Confidence 4679999999999999887665444431 12222 3444
Q ss_pred CccccccccccchhccccCcccccc--cchhccc----CceEEecccccCCH------HHHHHHHHHHHcCceeEeeCCe
Q 007444 193 VTEDRLIGSVDVEESVKTGTTVFQP--GLLAEAH----RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGI 260 (603)
Q Consensus 193 ~~~~~l~G~ldl~~~l~~g~~~~~~--Gll~~A~----~gIL~IDEi~~l~~------~~~~~LL~~l~~g~~~v~r~G~ 260 (603)
++...+.|.++ ..+ ..+... |.+..+. ..|+||||+|.-.. ..+..|.++|+.|.... +.+.
T Consensus 1342 Tta~~l~~~~e--~~~---e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd-~~~~ 1415 (3245)
T 3vkg_A 1342 TTPELLLKTFD--HHC---EYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWR-TSDH 1415 (3245)
T ss_dssp CCHHHHHHHHH--HHE---EEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEE-TTTT
T ss_pred CCHHHHHHHHh--hcc---eEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEE-CCCC
Confidence 55556666542 111 111111 4444332 24999999998764 48899999999887544 3333
Q ss_pred eeEecCCcEEEEEeCCCC----CCccHHHHhhhcccccccCCCCHHHHHHHHH
Q 007444 261 SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (603)
Q Consensus 261 s~~~p~~~~lIattNp~e----g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~ 309 (603)
....-.+|.+||||||.. ..+++.|++||.+. .++.| +.+....|..
T Consensus 1416 ~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi-~i~~p-s~esL~~If~ 1466 (3245)
T 3vkg_A 1416 TWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPIL-LVDFP-STSSLTQIYG 1466 (3245)
T ss_dssp EEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEE-ECCCC-CHHHHHHHHH
T ss_pred eEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEE-EeCCC-CHHHHHHHHH
Confidence 433336899999999863 35899999999985 88855 7777777755
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=2.1e-08 Score=96.40 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=35.2
Q ss_pred CCCCCCcccccHH----HHHHHHHhhh-ccC---CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 90 QFFPLAAVVGQDA----IKTALLLGAI-DRE---IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 90 ~~~~f~~IvGq~~----~k~aL~laav-~p~---~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...+|+++++.+. ++..+.-.+- .+. ..+|+|+||+|||||+++++++..+.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567888887552 3333222111 111 17899999999999999999998763
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=6e-07 Score=82.80 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=39.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCC--CCCCccHHHHhhhccccccc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSAD 296 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp--~eg~L~~~LldRf~l~v~v~ 296 (603)
..+|+|||+..++...+..|+..++... + .| ..++|.|+|. .+....+.|.+||.-.+.+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~---~-~g-------~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFR---N-SG-------KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHH---H-HT-------CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHH---H-cC-------CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 4699999999998777888888876432 0 01 1224456663 33333399999996554443
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.30 E-value=1.5e-06 Score=112.12 Aligned_cols=140 Identities=20% Similarity=0.122 Sum_probs=94.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~~~ 196 (603)
.|..+.||+|||||.+++.|++.++..- ..|||+.. .+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~----~vfnC~~~------------------------------------~d~- 643 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFV----LVFCCDEG------------------------------------FDL- 643 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCE----EEEECSSC------------------------------------CCH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeE----EEEeCCCC------------------------------------CCH-
Confidence 4567999999999999999999996422 12555211 111
Q ss_pred cccccccchhccccCcccccccchhcccCceEEecccccCCHHHHHHHHHHHH-------cCceeEeeC-CeeeEecCCc
Q 007444 197 RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT-------EGVNIVERE-GISFKHPCKP 268 (603)
Q Consensus 197 ~l~G~ldl~~~l~~g~~~~~~Gll~~A~~gIL~IDEi~~l~~~~~~~LL~~l~-------~g~~~v~r~-G~s~~~p~~~ 268 (603)
..+|. +-.|+.. .|.+.++||+|+++.+++..+.+.+. ++...+.=+ |..+.....+
T Consensus 644 ~~~g~-------------i~~G~~~--~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~ 708 (3245)
T 3vkg_A 644 QAMSR-------------IFVGLCQ--CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDM 708 (3245)
T ss_dssp HHHHH-------------HHHHHHH--HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTC
T ss_pred HHHHH-------------HHhhHhh--cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCe
Confidence 11221 1123322 46789999999999999888766554 344445555 7788888899
Q ss_pred EEEEEeCCCC---CCccHHHHhhhcccccccCCCCHHHHHHHHHHHHHH
Q 007444 269 LLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (603)
Q Consensus 269 ~lIattNp~e---g~L~~~LldRf~l~v~v~~p~~~e~r~eI~~~~~~f 314 (603)
.++.||||.- .+|++.|.+||--+ .+..| |.+...+|+-....|
T Consensus 709 ~vfiTmNpgY~gr~eLP~nLk~lFr~v-~m~~P-d~~~i~ei~L~s~Gf 755 (3245)
T 3vkg_A 709 GIFVTMNPGYAGRSNLPDNLKKLFRSM-AMIKP-DREMIAQVMLYSQGF 755 (3245)
T ss_dssp EEEECBCCCGGGCCCSCHHHHTTEEEE-ECCSC-CHHHHHHHHHHTTTC
T ss_pred EEEEEeCCCccCcccChHHHHhhcEEE-EEeCC-CHHHHHHHHHHHccc
Confidence 9999999842 47999999999774 77755 888777776543333
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.25 E-value=2.5e-07 Score=95.65 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCCCCcccccH-H---HHHHHH-Hhhhcc--CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 91 FFPLAAVVGQD-A---IKTALL-LGAIDR--EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 91 ~~~f~~IvGq~-~---~k~aL~-laav~p--~~~gVLL~GppGTGKT~lArala~~l 140 (603)
..+|+++++.+ . +..++. ...-.+ ...+|+|+||+|||||+||++++..+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46788888643 2 222221 111111 14789999999999999999999876
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.03 E-value=1.1e-05 Score=78.15 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=24.9
Q ss_pred ccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 113 DREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 113 ~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|...++||+||||||||++|.+|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556799999999999999999999873
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=3.4e-05 Score=77.84 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.2
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
|...+|+|+||||||||+++.+|+..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3456799999999999999999998753
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.82 E-value=4.3e-05 Score=78.61 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=36.8
Q ss_pred CCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 93 ~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.-..++|.+.....|.-.... .+.++|+|++|+|||+|++.+.+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~--~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN--YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ChHhcCChHHHHHHHHHHHhc--CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 345689999988888543322 2689999999999999999999876
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.76 E-value=3.4e-05 Score=79.58 Aligned_cols=46 Identities=13% Similarity=-0.061 Sum_probs=37.5
Q ss_pred CCCCcccccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 92 ~~f~~IvGq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.....++|.+.....|.- +.. +.++|+|++|+|||+|++.+.+.+.
T Consensus 10 ~~~~~~~gR~~el~~L~~--l~~--~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG--LRA--PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH--TCS--SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCHHHhcChHHHHHHHHH--hcC--CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 344668999988888766 332 6899999999999999999988764
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.63 E-value=0.00011 Score=71.06 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=41.4
Q ss_pred cCceEEecccccC--CH-HHH--HHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCCCccHHHHhhhcccccccC
Q 007444 224 HRGVLYIDEINLL--DE-GIS--NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADL 297 (603)
Q Consensus 224 ~~gIL~IDEi~~l--~~-~~~--~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg~L~~~LldRf~l~v~v~~ 297 (603)
.+.||+|||++.+ +. ... ..++..++...- ..+.+|.++++ ...|+.+|.+|+..++.+..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~------------~~~~iil~tq~-~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRH------------QGIDIFVLTQG-PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTT------------TTCEEEEEESC-GGGBCHHHHTTEEEEEEEEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCc------------CCeEEEEECCC-HHHHhHHHHHHhheEEEEcC
Confidence 3789999999998 32 111 134455544331 13566777775 78899999999999988773
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.62 E-value=8e-05 Score=70.90 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=38.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeEeeCCeeeEecCCcEEEEEeCCCCC---CccHHHHhhhccccccc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSAD 296 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~~lIattNp~eg---~L~~~LldRf~l~v~v~ 296 (603)
..+|+|||++.++++.++.|...++.+. .+++.|......+ ...+.|+.+.+...++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~--------------~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI--------------DVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC--------------EEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC--------------CEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3599999999998888888888888754 2344455443222 34467777766554544
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.62 E-value=4.3e-05 Score=83.08 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=38.4
Q ss_pred cccccCCCCCCCCccc-ccHHHHHHHHHhhhccCCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 83 DQDSYGRQFFPLAAVV-GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 83 ~~~~~~~~~~~f~~Iv-Gq~~~k~aL~laav~p~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.++..+++|.+|+.+- +|..+...++-.... +.+.++|.|++|||||+++..+...+
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555668899999986 777777776543332 33589999999999999999998776
No 102
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.58 E-value=0.00021 Score=74.21 Aligned_cols=128 Identities=14% Similarity=0.020 Sum_probs=80.9
Q ss_pred cCceEEeccccc-CCHHHHHHHHHHHHcCceeEeeCCeeeEecCCc-EEEEEeCCCC----CCccHHHHhhhcccccccC
Q 007444 224 HRGVLYIDEINL-LDEGISNLLLNVLTEGVNIVEREGISFKHPCKP-LLIATYNPEE----GVVREHLLDRIAINLSADL 297 (603)
Q Consensus 224 ~~gIL~IDEi~~-l~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~-~lIattNp~e----g~L~~~LldRf~l~v~v~~ 297 (603)
..-|++|||++. ++...++.|+..+++-. .+. +++.+++.+. ..+-+.+..|... +.+.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~-------------~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~- 140 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLH-------------DDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQ- 140 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCB-------------TTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEEC-
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCC-------------CCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEee-
Confidence 356999999999 99999999999998632 233 3444444333 3456777777643 3665
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhhHhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007444 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (603)
Q Consensus 298 p~~~e~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~I~~ar~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~ 377 (603)
|.+..+....+... ++ ...+.++++++.+|++.+ +. +.|..++.+..
T Consensus 141 ~l~~~~l~~~l~~~---------------------------~~--~~g~~i~~~a~~~l~~~~---~g-dl~~~~~elek 187 (343)
T 1jr3_D 141 TPEQAQLPRWVAAR---------------------------AK--QLNLELDDAANQVLCYCY---EG-NLLALAQALER 187 (343)
T ss_dssp CCCTTHHHHHHHHH---------------------------HH--HTTCEECHHHHHHHHHSS---TT-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---------------------------HH--HcCCCCCHHHHHHHHHHh---ch-HHHHHHHHHHH
Confidence 44444333222211 01 125789999998887653 33 56777776643
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 378 AKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 378 Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
++.+.+...||.+||.+.+...
T Consensus 188 ---l~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 188 ---LSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp ---HHHHCTTCEECHHHHHHHHHHH
T ss_pred ---HHHhcCCCCCCHHHHHHHHhhh
Confidence 3344455689999999886653
No 103
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.39 E-value=7.4e-05 Score=73.93 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=36.0
Q ss_pred ccCCcEEEEEEeCCchhhhhhhhHHhHHHHHHhhcccc----ccccccC
Q 007444 558 RKAGALVGLMFSVLILQLILLPFQEEKGKRMKLIFPQK----PSCIFYS 602 (603)
Q Consensus 558 ~~~~~l~ifvvDaS~gSma~~Rm~~aKgav~~lL~da~----~~~~~~~ 602 (603)
.....-+|||||+| |||. .||..+|+++..||.+.| +++|+++
T Consensus 131 e~~~~~vvfLVDtS-gSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV 177 (242)
T 3rag_A 131 DEVALHLVVCLDTS-ASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVI 177 (242)
T ss_dssp HHSCEEEEEEEECS-GGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred ccCCCCEEEEEECc-ccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 34678999999999 9997 799999999999999864 3666654
No 104
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.00049 Score=76.94 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+.++|.|+||||||+++.++...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 105
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.85 E-value=0.0012 Score=68.35 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
...++|+||||||||+|+..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 344899999999999999999875
No 106
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.83 E-value=0.0029 Score=71.22 Aligned_cols=25 Identities=40% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+.++|.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988776654
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.70 E-value=0.004 Score=65.36 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-++|.||+|+||||+.+++..+++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34699999999999999999998875
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.0038 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcC
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEG 251 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g 251 (603)
..+|+|||++.++.++++.|..+.+.+
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCC
Confidence 359999999999988877776655544
No 109
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.46 E-value=0.0023 Score=79.20 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
+||+||||||||+||.+++...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 9999999999999999998754
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.0044 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999885
No 111
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.59 E-value=0.0067 Score=55.82 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|++|+||||+++.|+..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999875
No 112
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.59 E-value=0.017 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=21.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+.++|.||+|+|||.++..+...+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999988887663
No 113
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.56 E-value=0.034 Score=54.52 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=21.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
.-.|++.|++|+|||+++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3459999999999999988888765
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.49 E-value=0.0096 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|+||||+++.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999999876
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.46 E-value=0.0067 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.28 E-value=0.032 Score=58.78 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-++|.||+|+||||++++|..+++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44599999999999999999999875
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.013 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|+||||+++.|+..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999887
No 118
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.20 E-value=0.0093 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998874
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.16 E-value=0.01 Score=54.69 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-|+|.|+||+||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999998
No 120
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.12 E-value=0.014 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|+|.|++|+||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.02 E-value=0.016 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
..|+|.|.+|+||||+++.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999876
No 122
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.98 E-value=0.035 Score=52.92 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.5
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
-+|+|||++.++++.++.|..+.+.+.
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~~~~ 109 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAESGR 109 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 599999999998888887766666543
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.91 E-value=0.014 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.| ..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4889999999999999999 6553
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.88 E-value=0.018 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.032 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998763
No 125
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.85 E-value=0.013 Score=54.58 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.83 E-value=0.016 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|++|+||||+++.|+..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.81 E-value=0.012 Score=54.87 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 128
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.75 E-value=0.013 Score=55.46 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998864
No 129
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.71 E-value=0.016 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999764
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.69 E-value=0.014 Score=55.36 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-|.|.|++|+||||+++.|+..++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999873
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.65 E-value=0.013 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 132
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.64 E-value=0.018 Score=55.14 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998774
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.61 E-value=0.016 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|++.+.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998763
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.013 Score=54.83 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|.|++|+||||+++.|+..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 348999999999999999999863
No 135
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.57 E-value=0.014 Score=54.06 Aligned_cols=25 Identities=44% Similarity=0.441 Sum_probs=18.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999998875
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.57 E-value=0.016 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4589999999999999999998874
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=53.70 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 138
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.54 E-value=0.041 Score=69.10 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
...+|+|+||||||||+||.+++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998764
No 139
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.51 E-value=0.022 Score=53.35 Aligned_cols=25 Identities=44% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|+||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999999983
No 140
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.50 E-value=0.017 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3489999999999999999998763
No 141
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.50 E-value=0.017 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+.|.||+|+|||||++.|+.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.49 E-value=0.018 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998764
No 143
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.49 E-value=0.018 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999875
No 144
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.022 Score=53.23 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.||+|+|||||++.|...++
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999875
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.47 E-value=0.021 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.||+|+||||+++.|+.+++
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999876
No 146
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.43 E-value=0.019 Score=54.94 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.42 E-value=0.022 Score=54.23 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4589999999999999999999875
No 148
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.34 E-value=0.021 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999764
No 149
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.33 E-value=0.09 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=21.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 226 GVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 226 gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
.+|+|||++-++++.++.|..+.+.+.
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~~~~~ 129 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLANRGY 129 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CEEEEECcccCCHHHHHHHHHHhhCCC
Confidence 599999999999888877666566553
No 150
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.30 E-value=0.021 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 378999999999999999999875
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.27 E-value=0.019 Score=53.63 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.26 E-value=0.019 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999874
No 153
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.23 E-value=0.027 Score=53.90 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
..-|.|.||+|+||||+++.|+..++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345889999999999999999998763
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.16 E-value=0.023 Score=57.62 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+++.|+..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998774
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.16 E-value=0.021 Score=53.06 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.15 E-value=0.023 Score=54.60 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999874
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.12 E-value=0.024 Score=54.81 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999998874
No 158
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.08 E-value=0.031 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
++|+|.||+|+|||||++.|....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999988876
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.97 E-value=0.026 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=22.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|.|.|++|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999987
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.97 E-value=0.031 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998874
No 161
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.95 E-value=0.024 Score=54.65 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|++|+||||+++.|+..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998875
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.95 E-value=0.022 Score=56.31 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+++.|+..++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999875
No 163
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.94 E-value=0.026 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 164
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.88 E-value=0.029 Score=54.01 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998774
No 165
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.86 E-value=0.15 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=24.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCc
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLTEGV 252 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~~g~ 252 (603)
--+|+|||+.-+++++++.|..+.+.|.
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTTC
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCCC
Confidence 3499999999999999999988887665
No 166
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.80 E-value=0.03 Score=60.31 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHH
Q 007444 225 RGVLYIDEINLLDEGISNLLLNVLT 249 (603)
Q Consensus 225 ~gIL~IDEi~~l~~~~~~~LL~~l~ 249 (603)
..+|+|||+..++...+..|+..+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 4699999999999999988877653
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.79 E-value=0.031 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-++|.|++|+||||+++.|+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 37899999999999999998754
No 168
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.72 E-value=0.031 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|++|+||||+++.|+..+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998874
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.71 E-value=0.03 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|.|.|++|+||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 170
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.71 E-value=0.027 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998763
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.69 E-value=0.034 Score=52.15 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.||.|+||||+++.|..+++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999885
No 172
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.67 E-value=0.032 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998874
No 173
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.67 E-value=0.031 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|.|.|++|+||||+++.|++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 174
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.66 E-value=0.063 Score=59.49 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=36.3
Q ss_pred CCCCCcccccHHHHHHHHHhhh--ccCCCcEEEECCCCChHHHHHHHHHH
Q 007444 91 FFPLAAVVGQDAIKTALLLGAI--DREIGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~laav--~p~~~gVLL~GppGTGKT~lArala~ 138 (603)
|.....+||.+..+..|.-... ....+-|+|+|++|+|||+||+.++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3445679999999888854333 22344599999999999999998864
No 175
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.66 E-value=0.028 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.||+|+|||||++.|+.+++
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999875
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.66 E-value=0.035 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|+..+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 3589999999999999999999873
No 177
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.56 E-value=0.035 Score=54.49 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999996653
No 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.50 E-value=0.036 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|+||+||||+++.|+..++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998764
No 179
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.49 E-value=0.036 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 180
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.49 E-value=0.04 Score=52.37 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=23.5
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCee
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEV 145 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~ 145 (603)
-|.|.|++|+||||+++.|+..++.+.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 3889999999999999999998754433
No 181
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.48 E-value=0.036 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.||||+||+|.|+.|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999998874
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.46 E-value=0.035 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|+|.|+||+||||+++.|+..+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999874
No 183
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.45 E-value=0.033 Score=53.37 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.43 E-value=0.032 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999998763
No 185
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.34 E-value=0.4 Score=53.13 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=41.5
Q ss_pred eEEecccccC----CHHHHHHHHHHHHcCceeEeeCCeeeEecCCc-EEEEEeCCCCCCccHHHHhhhcccccccC
Q 007444 227 VLYIDEINLL----DEGISNLLLNVLTEGVNIVEREGISFKHPCKP-LLIATYNPEEGVVREHLLDRIAINLSADL 297 (603)
Q Consensus 227 IL~IDEi~~l----~~~~~~~LL~~l~~g~~~v~r~G~s~~~p~~~-~lIattNp~eg~L~~~LldRf~l~v~v~~ 297 (603)
+|+|||+..+ +..+.+.|..++..|+- ..+ ++++|..|....++..+.+-|..+|.+..
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa------------~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv 409 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKARA------------AGIHLILATQRPSVDVITGLIKANIPTRIAFQV 409 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCTT------------TTEEEEEEESCCCTTTSCHHHHHTCCEEEEECC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHhh------------CCeEEEEEecCcccccccHHHHhhhccEEEEEc
Confidence 7899999866 55677777777777751 133 44555556656788888888888877664
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.34 E-value=0.043 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...+.|.||+|+|||||++.|..+++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999999999999999998875
No 187
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.32 E-value=0.04 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||||+||+|.|+.|+..+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999998874
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.30 E-value=0.047 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.||.|+|||||++.|+.+++
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999999986
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.22 E-value=0.041 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|.|.|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 5
No 190
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.18 E-value=0.043 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|.|.|++|+||||+++.|+..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999999999976
No 191
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.18 E-value=0.033 Score=53.53 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=25.2
Q ss_pred hccCCCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 112 IDREIGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 112 v~p~~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+.....+|+|.||+|+|||++|..|+....
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 333456799999999999999999998765
No 192
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.16 E-value=0.17 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.2
Q ss_pred cEEEECCCCChHH-HHHHHHHHhC
Q 007444 118 GIAISGRRGTAKT-VMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT-~lArala~~l 140 (603)
=.+|+|+.|+||| .|.+++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 3889999999999 8999988764
No 193
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=93.11 E-value=0.046 Score=51.82 Aligned_cols=40 Identities=10% Similarity=-0.075 Sum_probs=31.3
Q ss_pred CcEEEEEEeCCchhhhhhhhHHhHHHHHHhhccc----ccccccc
Q 007444 561 GALVGLMFSVLILQLILLPFQEEKGKRMKLIFPQ----KPSCIFY 601 (603)
Q Consensus 561 ~~l~ifvvDaS~gSma~~Rm~~aKgav~~lL~da----~~~~~~~ 601 (603)
..-++||||.| |||...++..+|.++..++..- ..+||.+
T Consensus 21 ~~DivfvlD~S-~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~v 64 (199)
T 3zqk_A 21 VLDVAFVLEGS-DKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTV 64 (199)
T ss_dssp CCEEEEEEECC-TTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEE
T ss_pred CcCEEEEEECC-CCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 35689999999 9998888888888888877655 3456554
No 194
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.07 E-value=0.046 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999999764
No 195
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.91 E-value=0.066 Score=52.02 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.||.|+|||||.+.|...+++
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345889999999999999999999873
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.89 E-value=0.057 Score=56.98 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
....++|.||+|+||||+++.|+..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44579999999999999999999875
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.88 E-value=0.067 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-+.|.||.|+|||||++.|..++|
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999885
No 198
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.85 E-value=0.041 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|+.|+||||+++.|+.+++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.85 E-value=0.049 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||+++.|+..++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998874
No 200
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.84 E-value=0.083 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|++|+||||+++.|+..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3599999999999999999998874
No 201
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.82 E-value=0.059 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999774
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.81 E-value=0.072 Score=51.05 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-|.|.||+|+|||||++.|....+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999998875
No 203
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.78 E-value=0.067 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+++.|+..+.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~ 27 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNP 27 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 489999999999999999998643
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.77 E-value=0.062 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.||.|+|||||++.|+..+|
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3488999999999999999999984
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.76 E-value=0.05 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.5
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-|.|.|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 206
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.67 E-value=0.063 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.||+|+|||++++.|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999885
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.65 E-value=0.059 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|.|++|+|||+|++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999654
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.59 E-value=0.057 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-+.|.||+|+|||||++.|+..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999864
No 209
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.48 E-value=0.062 Score=52.89 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|.|.||+|+||||+++.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999998874
No 210
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.47 E-value=0.071 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|+..+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999998774
No 211
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=92.32 E-value=0.062 Score=53.92 Aligned_cols=42 Identities=12% Similarity=-0.052 Sum_probs=32.8
Q ss_pred cCCcEEEEEEeCCchhhhh-hhhHHhHHHHHHhhcccc----cccccc
Q 007444 559 KAGALVGLMFSVLILQLIL-LPFQEEKGKRMKLIFPQK----PSCIFY 601 (603)
Q Consensus 559 ~~~~l~ifvvDaS~gSma~-~Rm~~aKgav~~lL~da~----~~~~~~ 601 (603)
+...-++||||.| |||.. ..+..+|.++..|+..-. .+||.+
T Consensus 19 ~~~~div~vlD~S-gSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvgl 65 (281)
T 4hqf_A 19 NDEVDLYLLMDGS-GSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYA 65 (281)
T ss_dssp CSCEEEEEEEECC-CCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEE
T ss_pred CCceeEEEEEeCC-CCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEE
Confidence 3467799999999 99987 455899999999987654 456654
No 212
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=92.28 E-value=0.22 Score=41.00 Aligned_cols=46 Identities=22% Similarity=0.027 Sum_probs=36.3
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 360 ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 360 a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
+......|......+++.|...|..++...|+.+|+..|+.-+.+.
T Consensus 39 A~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 39 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 3344445677777888888888888888899999999999987654
No 213
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.26 E-value=0.071 Score=49.30 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=16.5
Q ss_pred cEEEECCCCChHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARG 135 (603)
Q Consensus 118 gVLL~GppGTGKT~lAra 135 (603)
-+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999994
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.17 E-value=0.065 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-|.|.|++|+||||+++.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34899999999999999999986
No 215
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.16 E-value=0.078 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
...|.|.|++|+||||+++.|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999774
No 216
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.11 E-value=0.034 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|+..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 217
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.06 E-value=0.14 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.+-++|.||+|+||||+.+++..++++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 445899999999999999999998753
No 218
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.99 E-value=0.058 Score=50.73 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred hccCCCcEEEECCCCChHHHHHHHHHHh
Q 007444 112 IDREIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 112 v~p~~~gVLL~GppGTGKT~lArala~~ 139 (603)
+.-...+|||.|++|+||||+|..+...
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3445678999999999999999998874
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.92 E-value=0.095 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.1
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
.-++|.|++|+|||++++.++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999987
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.72 E-value=0.091 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
.-+.|.||+|+|||||++.|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999983
No 221
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=91.72 E-value=0.1 Score=56.52 Aligned_cols=40 Identities=5% Similarity=-0.132 Sum_probs=32.6
Q ss_pred CcEEEEEEeCCchhhh--hhhhHHhHHHHHHhhccc-ccccccc
Q 007444 561 GALVGLMFSVLILQLI--LLPFQEEKGKRMKLIFPQ-KPSCIFY 601 (603)
Q Consensus 561 ~~l~ifvvDaS~gSma--~~Rm~~aKgav~~lL~da-~~~~~~~ 601 (603)
..-++||||.| |||. -.||..+|.++..++..- -.+|+.+
T Consensus 77 ~~dvv~VLD~S-GSM~~~~~rl~~ak~a~~~ll~~L~~~drv~l 119 (464)
T 4fx5_A 77 ENVEVIIIDCS-GSMDYPRTKMMAAKEATKVAIDTLTDGAFFAV 119 (464)
T ss_dssp CEEEEEEEECC-GGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CceEEEEEEcC-cccCCCCchHHHHHHHHHHHHHhCCCCCEEEE
Confidence 36689999999 9998 689999999999998765 3455544
No 222
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.70 E-value=0.082 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||+|+|||+|+..|++.++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 589999999999999999999885
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.70 E-value=0.09 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+.-+.|.||+|+|||||++.|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34569999999999999999999987
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.64 E-value=0.084 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-++|.||+|+||||+.+.|..+++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34599999999999999999999874
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.63 E-value=0.1 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-++|.||+|+|||+|++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999985
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.60 E-value=0.078 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998763
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.58 E-value=0.089 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.|++|+||||+++.|+.+++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999874
No 228
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.52 E-value=0.093 Score=51.72 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 568899999999999999999998753
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.51 E-value=0.078 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 458899999999999999999998753
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.47 E-value=0.064 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=15.7
Q ss_pred CcEEEECCCCChHHHHHHHHH-HhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLH-AILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala-~~l~~ 142 (603)
.-+.|.||+|+||||+++.|+ .+++.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 348899999999999999999 88753
No 231
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.46 E-value=0.11 Score=47.95 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-.+|+|+.|+|||+++++|..++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34678999999999999999999875
No 232
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.44 E-value=0.095 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||+++.|+..+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999885
No 233
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=91.36 E-value=0.1 Score=50.27 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=30.0
Q ss_pred CcEEEEEEeCCchhhhhhhhHHhHHHHHHhhccc----cccccccC
Q 007444 561 GALVGLMFSVLILQLILLPFQEEKGKRMKLIFPQ----KPSCIFYS 602 (603)
Q Consensus 561 ~~l~ifvvDaS~gSma~~Rm~~aKgav~~lL~da----~~~~~~~~ 602 (603)
..-++||||.| |||. .+..+|.++..++..- ..+||.++
T Consensus 22 ~~div~vlD~S-gSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv 64 (223)
T 2b2x_A 22 QLDIVIVLDGS-NSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIV 64 (223)
T ss_dssp CEEEEEEEECS-TTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEE
T ss_pred cceEEEEEECC-CChh--hHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence 46799999999 9997 3788899888888754 25666543
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.33 E-value=0.075 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34789999999999999999998865
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.32 E-value=0.094 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|-|.||.|+||||+++.|+.+++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 388999999999999999999774
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.30 E-value=0.15 Score=55.96 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...++|.||+|+||||+.++|..++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 456999999999999999999999874
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.20 E-value=0.11 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||+|+|||++++.|+..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 589999999999999999999885
No 238
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.12 E-value=0.11 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-|.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 239
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.11 E-value=0.16 Score=57.23 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhccCCCcEEEECCCCChHHH-HHHHHHHhC
Q 007444 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTV-MARGLHAIL 140 (603)
Q Consensus 101 ~~~k~aL~laav~p~~~gVLL~GppGTGKT~-lArala~~l 140 (603)
+.-+.|+..+... ..-.||.||||||||+ ++..|..++
T Consensus 192 ~~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 192 TSQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566544331 2358999999999995 555555554
No 240
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.11 E-value=0.12 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||+|+|||+|+..|+..++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 488999999999999999999875
No 241
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.04 E-value=0.1 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+|||||++.|+.+++
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 388999999999999999999875
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.97 E-value=0.098 Score=50.66 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999988653
No 243
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.89 E-value=0.12 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||+|+|||+|+..|+..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 478999999999999999999875
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.87 E-value=0.099 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347899999999999999999998753
No 245
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=90.85 E-value=0.44 Score=38.02 Aligned_cols=45 Identities=22% Similarity=0.032 Sum_probs=37.1
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC
Q 007444 360 ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (603)
Q Consensus 360 a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (603)
+......|......+++.|...|..++...|+.+|+..|+.-++.
T Consensus 31 a~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 31 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 334455577888889999998999999999999999999988764
No 246
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.77 E-value=0.1 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 247
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.76 E-value=0.13 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
|.|.|.+|+||||+++.|+..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999875
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.69 E-value=0.1 Score=52.49 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 348899999999999999999998753
No 249
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.67 E-value=0.15 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999874
No 250
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.62 E-value=0.11 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34889999999999999999999864
No 251
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.55 E-value=0.12 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|...+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999999885
No 252
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.55 E-value=0.11 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999998753
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.55 E-value=0.11 Score=51.10 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 358899999999999999999998653
No 254
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=90.53 E-value=0.12 Score=60.57 Aligned_cols=44 Identities=7% Similarity=-0.096 Sum_probs=34.5
Q ss_pred ccCCcEEEEEEeCCchhhhh-h-----hhHHhHHHHHHhhccc---cccccccC
Q 007444 558 RKAGALVGLMFSVLILQLIL-L-----PFQEEKGKRMKLIFPQ---KPSCIFYS 602 (603)
Q Consensus 558 ~~~~~l~ifvvDaS~gSma~-~-----Rm~~aKgav~~lL~da---~~~~~~~~ 602 (603)
.+.+.-++||||.| |||.. . ||..+|.|+..+|..- ..+||.++
T Consensus 221 ~~~~~DIVfVLD~S-GSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV 273 (893)
T 2ww8_A 221 KSVPLDVVILLDNS-NSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALV 273 (893)
T ss_dssp TTCCEEEEEEEECC-GGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEE
T ss_pred cCCCccEEEEEeCC-CCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 45678899999999 99965 3 8999999999988532 35777764
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.45 E-value=0.11 Score=51.85 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 348899999999999999999998753
No 256
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.39 E-value=0.11 Score=55.36 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|+||+||||+++.|+..+.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999987663
No 257
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.34 E-value=0.16 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=23.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..+.|.|++|+|||||++.|+.+++
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999985
No 258
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=90.32 E-value=0.085 Score=60.20 Aligned_cols=43 Identities=12% Similarity=-0.106 Sum_probs=34.1
Q ss_pred cCCcEEEEEEeCCchhhhhhhhHHhHHHHHHhhccc----cccccccC
Q 007444 559 KAGALVGLMFSVLILQLILLPFQEEKGKRMKLIFPQ----KPSCIFYS 602 (603)
Q Consensus 559 ~~~~l~ifvvDaS~gSma~~Rm~~aKgav~~lL~da----~~~~~~~~ 602 (603)
+.+.-++||||.| |||....|..+|.++..|+..- ..+||.++
T Consensus 241 ~~~~div~vlD~S-gSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv 287 (741)
T 3hrz_D 241 SGSMNIYLVLDGS-GSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLV 287 (741)
T ss_dssp TCEEEEEEEEECS-TTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCceeEEEEeccC-CcccccchHHHHHHHHHHHHhhhccCCCceEEEE
Confidence 4456799999999 9998888999999998887763 35666653
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.31 E-value=0.12 Score=51.24 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45889999999999999999999864
No 260
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.29 E-value=0.13 Score=53.89 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...++|.||+|+||||++++|..++++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457999999999999999999998864
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.26 E-value=0.12 Score=52.13 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 348899999999999999999998753
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.25 E-value=0.12 Score=52.06 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-++|.|++|+|||||++.|+..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998763
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.25 E-value=0.13 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
..-++|+|++|+|||||++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4459999999999999999998765
No 264
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=90.23 E-value=0.36 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+..+|.|++|+|||+++..+...+.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~ 217 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA 217 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999998887763
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.21 E-value=0.14 Score=50.05 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
+.-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3458899999999999999999998753
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.21 E-value=0.12 Score=51.84 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45889999999999999999998864
No 267
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.19 E-value=0.12 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 348899999999999999999998653
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.08 E-value=0.14 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|.|.|++|+||||+++.|..++.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 269
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.08 E-value=0.15 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|+..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999998764
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.02 E-value=0.13 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=21.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
..-+.|.||.|+|||||.+.|+.+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999988
No 271
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.98 E-value=0.13 Score=51.43 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=23.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 348899999999999999999998653
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.97 E-value=0.13 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35889999999999999999999865
No 273
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.97 E-value=0.21 Score=47.69 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|+.|+|||++++.|+..|.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999884
No 274
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.93 E-value=0.13 Score=53.18 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
...++|.|++|+||||++++|..++++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 467999999999999999999999864
No 275
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.93 E-value=0.15 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.+.|+.++++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999998653
No 276
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.90 E-value=0.16 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-++|.|+||+|||+++..++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999998877654
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.89 E-value=0.12 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45889999999999999999998753
No 278
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.82 E-value=0.14 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34889999999999999999999864
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.82 E-value=0.14 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|+.|+||||+++.|+.+++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999999875
No 280
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.76 E-value=0.15 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-|.|.|++|+||||+++.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999995
No 281
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.62 E-value=0.16 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44889999999999999999999864
No 282
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.62 E-value=0.16 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.||.|+||||+++.|+.++.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999999999999875
No 283
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.51 E-value=0.17 Score=53.40 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.+.++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 34889999999999999999999864
No 284
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.46 E-value=0.11 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|++|+|||||++.|..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999875
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.40 E-value=0.17 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.||.|+|||||.+.|+.+++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345889999999999999999998864
No 286
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.35 E-value=0.3 Score=53.88 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHhhhcc---CCCcEEEECCCCChHHHHHHHHHH
Q 007444 98 VGQDAIKTALLLGAIDR---EIGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 98 vGq~~~k~aL~laav~p---~~~gVLL~GppGTGKT~lArala~ 138 (603)
+|.+..+..|.-..... ..+-|.|+|..|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59998888774332222 345699999999999999999996
No 287
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.33 E-value=0.16 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.+.++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Confidence 34889999999999999999998864
No 288
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.28 E-value=0.18 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34789999999999999999999864
No 289
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.27 E-value=0.18 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 34789999999999999999999864
No 290
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.19 E-value=0.19 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
.-+.|.||.|+|||||.|.|+.++++-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 347899999999999999999998653
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.12 E-value=0.18 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.5
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
+.|.||.|+||||+++.|+.++.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999874
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.12 E-value=0.21 Score=46.73 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|++|+|||+|.+.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.11 E-value=0.2 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|++|+||||++..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4588999999999999999998764
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.05 E-value=0.22 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 295
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.96 E-value=0.19 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 34889999999999999999999864
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.89 E-value=0.2 Score=46.74 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=21.0
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|.|.|++|+|||||++.+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998765
No 297
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.88 E-value=0.37 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=19.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+.++|.||||||||+++..+...+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999998777665443
No 298
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.72 E-value=0.88 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
+..++||.+++|+|||.++-.++..+
T Consensus 197 ~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 197 GKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCChHHHHHHHHHHH
Confidence 44679999999999999876665443
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.58 E-value=0.23 Score=46.48 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|++|+||||+++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4588999999999999999988764
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.52 E-value=0.25 Score=44.05 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 301
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.44 E-value=0.21 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+.|.||.|+|||||.+.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999875
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.34 E-value=0.24 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|..|+||||+++.|+..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999885
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.34 E-value=0.27 Score=43.63 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988753
No 304
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.32 E-value=0.17 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34789999999999999999999864
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.30 E-value=0.22 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.||.|+||||+++.|+.++.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998874
No 306
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.30 E-value=0.33 Score=58.05 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=37.3
Q ss_pred CCCCCCcccccHHHHHHHHHhhh--ccCCCcEEEECCCCChHHHHHHHHHHh
Q 007444 90 QFFPLAAVVGQDAIKTALLLGAI--DREIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~laav--~p~~~gVLL~GppGTGKT~lArala~~ 139 (603)
.|.+...+||.+..+..|.-... +...+-|.|+|+.|+|||+||+.++..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45556779999998888854332 223445889999999999999887653
No 307
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=88.30 E-value=1.4 Score=34.67 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007444 347 AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (603)
Q Consensus 347 ~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lv 402 (603)
.+++.+...|.++++ |....+++-|..+|...|+.+|+.+||+.|++..
T Consensus 18 ~~~~~v~~~L~e~~~-------ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 18 EYEPRVVNQLLEFTF-------RYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp CBCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 689999999999875 5666889999999999999999999999998764
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.29 E-value=0.21 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-+.|.||.|+|||||.+.|+.++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999974
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.18 E-value=0.19 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-++|+||||+|||+|+..++..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998765
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.18 E-value=0.21 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=21.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-+.|.||.|+|||||.+.|+.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999997
No 311
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.07 E-value=0.14 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|.+|+||||+++.|+..+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999875
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.00 E-value=0.24 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|.|++|+||||++..|+..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999998874
No 313
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.99 E-value=0.54 Score=59.24 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
..+||+|+||||||+|+..+....
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 449999999999999999988653
No 314
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.99 E-value=0.49 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+.++|.+|+|+|||.++-.+...+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~ 133 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4699999999999998877666553
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.98 E-value=0.29 Score=43.49 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 316
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.97 E-value=0.22 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.1
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.||+|+|||+|+..|+..++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 478999999999999999999886
No 317
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.96 E-value=0.27 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999998874
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.95 E-value=0.2 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-+.|.||.|+|||||.+.|+.++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999987
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.94 E-value=0.25 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.88 E-value=0.29 Score=43.62 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 321
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.87 E-value=0.23 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|+|.|.||+||||+++.|+..+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 322
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.84 E-value=0.3 Score=43.63 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999998764
No 323
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.78 E-value=0.27 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 324
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.76 E-value=0.23 Score=50.77 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPPI 143 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~~ 143 (603)
+.-+.|.||.|+|||||++.|..++++-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 4459999999999999999999988653
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.75 E-value=0.28 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|.|.|++|+|||+|.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 326
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.74 E-value=0.25 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-+.|+||+|+|||||++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.73 E-value=0.29 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.4
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
-++|.|+||+|||+++..++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 399999999999999987654
No 328
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.65 E-value=0.75 Score=49.01 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=15.7
Q ss_pred CCcEEEECCCCChHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMA 133 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lA 133 (603)
...+|+.||+|+|||+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999875
No 329
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.65 E-value=0.25 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|.|+.|+||||+++.|+.++.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 88999999999999999999874
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.63 E-value=0.27 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998874
No 331
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.61 E-value=0.31 Score=43.99 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998754
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.60 E-value=0.15 Score=51.76 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.5
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|+..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998764
No 333
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.60 E-value=0.31 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|+|||+|+..+...-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998753
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.59 E-value=0.29 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998754
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.52 E-value=0.32 Score=43.54 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999998754
No 336
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.48 E-value=0.33 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
.|+|.|++|+|||+|++.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 599999999999999999887654
No 337
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.45 E-value=0.21 Score=55.40 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|+|.|++|+||||++++|+..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3589999999999999999999875
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.37 E-value=0.29 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.|.|+.++++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 34889999999999999999998864
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.35 E-value=0.33 Score=43.28 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 340
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.35 E-value=0.26 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|+|+||+|||+|+..++..+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999888654
No 341
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.31 E-value=0.33 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988764
No 342
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.31 E-value=0.3 Score=43.62 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.3
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.31 E-value=0.33 Score=43.19 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
No 344
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.28 E-value=0.25 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-++|.|++|+||||++..|+..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998774
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.20 E-value=0.25 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44889999999999999999998864
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.12 E-value=0.3 Score=43.60 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.06 E-value=0.31 Score=43.63 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.0
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.05 E-value=0.29 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
++|.|+.|+||||+++.|+.++.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhh
Confidence 88999999999999999998874
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.04 E-value=0.34 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998863
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.95 E-value=0.21 Score=53.66 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=30.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
-|+|.|++|+||||++..|+..+... ......+.||+..+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGA 143 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhH
Confidence 48999999999999999999876532 1223456777776654
No 351
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.94 E-value=0.44 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.+-+.|.|++|+|||||.++|..+.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34688999999999999999999765
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.91 E-value=0.28 Score=43.76 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=18.4
Q ss_pred cEEEECCCCChHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala 137 (603)
.|+|.|++|+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999875
No 353
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.84 E-value=0.36 Score=43.49 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.83 E-value=0.26 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=18.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||+++.|++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999998874
No 355
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.79 E-value=0.35 Score=43.68 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999998753
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.73 E-value=0.37 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.5
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998753
No 357
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.70 E-value=0.33 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999763
No 358
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.64 E-value=0.34 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
-.|+|.|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999998854
No 359
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.64 E-value=0.35 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|+|+||+|||+++..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 349999999999999999998754
No 360
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.61 E-value=0.38 Score=43.84 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.50 E-value=0.38 Score=44.14 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998864
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.48 E-value=0.36 Score=43.58 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHh
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (603)
....|+|.|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999998753
No 363
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=86.47 E-value=0.23 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.6
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHH
Q 007444 114 REIGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 114 p~~~gVLL~GppGTGKT~lArala~ 138 (603)
-...+|||.|++|+|||++|-.+..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567799999999999999988765
No 364
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.44 E-value=0.52 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=19.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
+.++|.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999998777665543
No 365
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=86.44 E-value=1 Score=36.00 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=45.6
Q ss_pred HhccccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 341 EYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 341 ~~l~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
+.++++.++.++...+...+..+ ...+...|..+|..+++.+|+.+||..|++.+|.+
T Consensus 16 ~~~p~~~is~~A~~~i~~~~~~F-------i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 16 KHKPHLRLAANTDLLVHLSFLLF-------LHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp HHCTTCEECTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HhCCCCccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34567789999988887776543 33566677888889999999999999999988753
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.43 E-value=0.38 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 367
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.36 E-value=0.35 Score=43.62 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.35 E-value=0.39 Score=44.11 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|.+|+|||+|+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 369
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.33 E-value=0.4 Score=42.90 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.8
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
-.|+|.|++|+|||+|+..+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999865
No 370
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.28 E-value=0.33 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|+|.|.||+||||+++.|+..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999875
No 371
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.27 E-value=0.35 Score=43.53 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998753
No 372
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.26 E-value=0.34 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHHh
Q 007444 119 IAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (603)
+||+|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999865
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.22 E-value=0.29 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..-+.|.||.|+|||||.|.|+.+++
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 34589999999999999999999875
No 374
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.22 E-value=0.4 Score=43.50 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999998753
No 375
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.19 E-value=0.37 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|+|+||+|||+||..++..+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 449999999999999999888654
No 376
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.15 E-value=0.33 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+.-+.|.||.|+|||||+|.|+.++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34599999999999999999999874
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.15 E-value=0.41 Score=43.34 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999998754
No 378
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=85.98 E-value=5.7 Score=32.86 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=41.2
Q ss_pred ccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 345 ~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
++.++++++..|.++.+.. ...+.+-+..+|...||.+|+.+||..+++
T Consensus 30 g~~vs~~~i~aL~e~~~~~-------~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 30 DIKYTPRFINSLLELAYLQ-------LGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CceeCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4889999999999998754 356777888899999999999999987643
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.97 E-value=0.4 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
+-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998665
No 380
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.97 E-value=0.4 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=19.7
Q ss_pred EEEECCCCChHHHHHHHHHHh
Q 007444 119 IAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~ 139 (603)
++|+|+||+|||+++..++..
T Consensus 125 ~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999875
No 381
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.89 E-value=0.34 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
..|+|.|++|+|||+|.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.79 E-value=0.51 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
...|+|.|.+|+||||++..|...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998765
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.73 E-value=0.39 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 384
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.73 E-value=0.32 Score=53.29 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=23.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
..|+|.|.+|+||||++++|+..|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999985
No 385
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.68 E-value=0.35 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|+..+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999998874
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.64 E-value=0.45 Score=43.33 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998854
No 387
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.61 E-value=0.45 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|+..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999998764
No 388
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.48 E-value=0.83 Score=53.68 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHH
Q 007444 119 IAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~ 138 (603)
++|.||.|+||||+.|.++.
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999853
No 389
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.36 E-value=0.36 Score=51.27 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHH
Q 007444 119 IAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~ 138 (603)
++|+||+|+|||+|++.++.
T Consensus 181 ~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHH
Confidence 99999999999999997653
No 390
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.35 E-value=0.47 Score=43.06 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988753
No 391
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.33 E-value=0.47 Score=43.66 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998764
No 392
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.30 E-value=0.38 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-|+|.|.+|+||||+++.|++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999987
No 393
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.25 E-value=0.42 Score=43.55 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998754
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.21 E-value=0.4 Score=46.41 Aligned_cols=25 Identities=32% Similarity=0.158 Sum_probs=22.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-|.|.|++|+||||+++.|+..+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999999886
No 395
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=85.15 E-value=2.1 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=41.7
Q ss_pred cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 344 ~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
.++.++++++..|.++.+.. ...+.+-+..+|...||.+|+.+||..+++
T Consensus 44 r~~~vS~~ai~aL~El~~~~-------~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 44 KEMQFSKQTIAAISELTFRQ-------CENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HTCCBCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 36789999999999998764 346777888899999999999999987643
No 396
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.14 E-value=0.48 Score=43.96 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|+..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999998753
No 397
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.12 E-value=0.42 Score=49.43 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|++|+|||||.+.|..++.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3488999999999999999998763
No 398
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.12 E-value=0.4 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+++.|.+|+||||++..|+..+.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999997764
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.05 E-value=0.37 Score=49.10 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
-++|+|+||+|||+++..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998864
No 400
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.05 E-value=0.44 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|.+|+||||+++.|+..+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388899999999999999998874
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.05 E-value=0.5 Score=42.81 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
.-.|+|.|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999988753
No 402
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.05 E-value=0.49 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 403
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.01 E-value=0.37 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
...|+|.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999998753
No 404
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.00 E-value=0.49 Score=43.48 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999998864
No 405
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.99 E-value=0.46 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.9
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|||||++++.|+..+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999874
No 406
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.98 E-value=0.5 Score=43.61 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999888753
No 407
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.85 E-value=0.52 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998753
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.82 E-value=0.51 Score=43.56 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.1
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999877653
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.77 E-value=0.4 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998753
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.75 E-value=0.52 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.74 E-value=0.52 Score=43.23 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998764
No 412
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.70 E-value=0.84 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=17.6
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
+.+||.||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987665543
No 413
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=84.66 E-value=0.42 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|.+|+||||+++.|+..+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.61 E-value=0.53 Score=43.42 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998764
No 415
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.60 E-value=0.47 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
-++|.|+||+|||+++..++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999999988854
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.60 E-value=0.47 Score=43.82 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
.|+|.|++|+|||+|++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999988653
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.53 E-value=0.43 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.8
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|.|.|++|+||||.++.|+..+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998874
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.53 E-value=0.53 Score=43.35 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.8
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998753
No 419
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.49 E-value=0.42 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
+-|.|+||+||||+++.|+..+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998764
No 420
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.44 E-value=0.43 Score=43.23 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998763
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.44 E-value=0.54 Score=43.75 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998754
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.44 E-value=0.4 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
..|+|.|++|+|||+|++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998754
No 423
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.44 E-value=0.48 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999988753
No 424
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.41 E-value=0.26 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
.-|.|.|++|+|||||.+.|...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999987643
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.39 E-value=0.54 Score=43.40 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|.+|+|||+|++.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.35 E-value=0.54 Score=48.87 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.|+.|+|||||.+.|+....+
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345899999999999999999999753
No 427
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.29 E-value=0.38 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHh
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~ 139 (603)
...+|||.|++|+|||++|..+...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998874
No 428
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.27 E-value=0.5 Score=43.71 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998764
No 429
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.16 E-value=0.51 Score=42.87 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
..|+|.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4599999999999999999874
No 430
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.15 E-value=0.5 Score=43.82 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
...|+|.|++|+|||+|++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998763
No 431
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=84.00 E-value=5.2 Score=35.73 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred cccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 344 KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 344 ~~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
..+.++++++..|.++.+.. ...+.+-+..+|...||.+|+.+||..+++
T Consensus 36 ~~~~vS~~ai~aL~El~~~~-------~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 36 KGVLFSKQTVAAISEITFRQ-------AENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HTCEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 35789999999999998764 346777888899999999999999987754
No 432
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.91 E-value=0.44 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|++|+||||++..|+..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998764
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.88 E-value=0.52 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|.+|+|||+|++.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35999999999999999998864
No 434
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.86 E-value=0.58 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|+..+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998753
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.86 E-value=0.52 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998764
No 436
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.83 E-value=0.54 Score=42.96 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~ 138 (603)
.-.|+|.|++|+|||+|++.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999998864
No 437
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.78 E-value=0.54 Score=43.33 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46999999999999999998763
No 438
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=83.62 E-value=0.49 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~ 138 (603)
...|+|.|++|+|||+|.+.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999998864
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.56 E-value=0.37 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.1
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
-|.|.|+.|+||||+++.|+..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999876
No 440
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=83.55 E-value=0.37 Score=53.11 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=43.8
Q ss_pred CcChHHHHHhhCCchhhhhcccccCCcceeecc-cchh-------HHHhhc--cCCcEEEEEEeCCchhhhh----hhhH
Q 007444 516 RLAVDATLRAAAPYQKLRRERDTQKTRKVFVEK-TDMR-------AKRMAR--KAGALVGLMFSVLILQLIL----LPFQ 581 (603)
Q Consensus 516 ~la~~aTLraAAp~Q~~R~~~~~~~~~~~~i~~-~Dlr-------~k~r~~--~~~~l~ifvvDaS~gSma~----~Rm~ 581 (603)
+++.++++.+..+||.-|.... .+...+ .+++ .+.++. ..+..++||||.| |||.. .||.
T Consensus 318 ~~~P~~~~~a~r~y~~g~~~~~-----~i~w~~~~r~~~al~~~~~~~~~~~~~~~~~v~lvvD~S-gSM~~~~~~~~l~ 391 (538)
T 1yvr_A 318 RIHPFHILVALETYKKGHGNRG-----KLRWIPDTSIVEALDNAFYKSFKLVEPTGKRFLLAIDVS-ASMNQRVLGSILN 391 (538)
T ss_dssp TCCHHHHHHHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHTSCCCCCCCCCEEEEEECS-GGGGSBSTTSSCB
T ss_pred cCCcHHHHHHHHHhhccCCcCC-----CcCCCcchhHHHHHHHHHHHHHhhcCCCCceEEEEEECc-cccCCCCCCCcHH
Confidence 5777888988888886533210 111111 2222 222222 6778899999999 99964 3675
Q ss_pred HhHH-HHHHhhcccccccccc
Q 007444 582 EEKG-KRMKLIFPQKPSCIFY 601 (603)
Q Consensus 582 ~aKg-av~~lL~da~~~~~~~ 601 (603)
..+. +++.++.-.-.|+|.+
T Consensus 392 ~~~~Aa~l~~~~~~~~d~vgl 412 (538)
T 1yvr_A 392 ASVVAAAMCMLVARTEKDSHM 412 (538)
T ss_dssp HHHHHHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHhccCCceEE
Confidence 5333 2333333334566544
No 441
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.55 E-value=0.54 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHHHhCC
Q 007444 119 IAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l~ 141 (603)
|+|.|++|+||||++..|+..+.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998874
No 442
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.52 E-value=0.95 Score=47.87 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
.+..++|+|++|+|||+|++.|+..+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34569999999999999999988764
No 443
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.50 E-value=0.48 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.5
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.|++|+|||||.+.|..+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 388999999999999999998764
No 444
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=83.49 E-value=2 Score=35.15 Aligned_cols=46 Identities=20% Similarity=0.018 Sum_probs=36.5
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC
Q 007444 360 ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (603)
Q Consensus 360 a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (603)
+......|......+++.|...|..++...|+.+|+..|+.-+...
T Consensus 29 A~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 29 SRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 3344445667778888888888888899999999999999988664
No 445
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=83.48 E-value=0.55 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|+..|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 45999999999999999998864
No 446
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.40 E-value=0.57 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.9
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999998864
No 447
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.37 E-value=0.89 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l 140 (603)
..-|+|.|.+|+|||+|+..+...+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999988764
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.33 E-value=0.56 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 449
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.23 E-value=0.68 Score=49.70 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.||.|+|||||.+.|+.....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 345889999999999999999999853
No 450
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=83.22 E-value=0.6 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.++|+.++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56889999999999999999998764
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.20 E-value=0.49 Score=44.19 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=18.3
Q ss_pred cEEEECCCCChHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala 137 (603)
.|+|.|++|+|||+|++.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999875
No 452
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.11 E-value=0.38 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala 137 (603)
.-.|+|.|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4569999999999999998765
No 453
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.02 E-value=0.54 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-+.|.|++|+|||||++.|...+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3489999999999999999997653
No 454
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.99 E-value=0.56 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=20.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-++|+|+||+|||+|+..++..+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHH
Confidence 449999999999999999887654
No 455
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.97 E-value=0.66 Score=48.62 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHhC
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~~l 140 (603)
..++++|.|++|+|||++++.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999988654
No 456
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=82.97 E-value=0.67 Score=43.11 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|.+|+|||+|...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999998754
No 457
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.94 E-value=0.61 Score=42.94 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.3
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
..|+|.|.+|+|||+|+..+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999998764
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.90 E-value=0.67 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999998764
No 459
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.87 E-value=0.6 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999988764
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=82.85 E-value=1.1 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.4
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGL 136 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lAral 136 (603)
...+++.|++|+|||++...+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHH
Confidence 457999999999999876654
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.80 E-value=0.6 Score=51.46 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||.+.|+.++++
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45889999999999999999998753
No 462
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=82.78 E-value=0.42 Score=43.51 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=9.4
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998864
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.76 E-value=0.65 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
+-.+|+||.|+|||++..+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999987663
No 464
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.75 E-value=0.57 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~ 141 (603)
.-++|.|++|+|||||++.++..++
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4489999999999999999998763
No 465
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.68 E-value=0.58 Score=48.16 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=18.6
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
-++|+||||+|||+|+-.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998766554
No 466
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=82.63 E-value=0.6 Score=43.81 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=20.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHh
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~ 139 (603)
.-.|+|.|.+|+|||+|++.+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999988753
No 467
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.60 E-value=0.57 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCcEEEECCCCChHHHHHHH--HHHhCC
Q 007444 116 IGGIAISGRRGTAKTVMARG--LHAILP 141 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lAra--la~~l~ 141 (603)
..-++|.||+|+|||||++. ++.+++
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34599999999999999999 566664
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.50 E-value=0.61 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHH
Q 007444 115 EIGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 115 ~~~gVLL~GppGTGKT~lArala~ 138 (603)
....|+|.|++|+|||+|.+.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999999874
No 469
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=82.49 E-value=0.68 Score=42.90 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=19.7
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
-.|+|.|++|+|||+|++.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998874
No 470
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=82.41 E-value=0.7 Score=43.47 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.3
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q 007444 118 GIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~ 138 (603)
.|+|.|++|+|||+|++.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 599999999999999998875
No 471
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.40 E-value=0.61 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred cEEEECCCCChHHHHHHHHHHhC
Q 007444 118 GIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l 140 (603)
-++|.|+||+|||+|+..++..+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998764
No 472
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=82.31 E-value=5.4 Score=34.08 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred ccCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007444 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (603)
Q Consensus 345 ~v~is~~~l~~L~~~a~~~~v~s~Ra~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~ 400 (603)
.+.++++++..|.++.+.. ...+.+-+..+|...||.+|+.+||..|++
T Consensus 37 ~~~vs~~~i~aL~E~~~~~-------~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 37 GVLFSKQTVAAISEITFRQ-------CENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp TCEECHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CCccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 4689999999999998754 456777888899999999999999987754
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.30 E-value=0.66 Score=43.50 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
..|+|.|++|+|||+|+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999998764
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.27 E-value=0.51 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHHhC
Q 007444 119 IAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 119 VLL~GppGTGKT~lArala~~l 140 (603)
+.|.|++|+|||||++.|....
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7899999999999999998763
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.19 E-value=0.52 Score=43.07 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998753
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.19 E-value=0.68 Score=42.65 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=20.1
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999998864
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=82.16 E-value=0.58 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
..|.|.|++|+|||+|.++|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 478
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=82.16 E-value=0.33 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEECCCCChHHHHHHHHHHhCCC
Q 007444 120 AISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 120 LL~GppGTGKT~lArala~~l~~ 142 (603)
.|.||.|+|||||.++|+.++++
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 35699999999999999998863
No 479
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.11 E-value=0.6 Score=43.59 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.6
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
-.|+|.|++|+|||+|++.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3599999999999999999864
No 480
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=82.10 E-value=0.69 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.|++|+|||||+++|. .+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 48899999999999999999 764
No 481
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.06 E-value=0.66 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|.|.|+||+|||||.+.|...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 448999999999999999999765
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.00 E-value=0.67 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
.-|.|.|.||+||||++..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999998765
No 483
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.93 E-value=0.62 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.0
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLH 137 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala 137 (603)
-.|+|.|++|+|||+|++.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999874
No 484
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=81.88 E-value=0.53 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~ 138 (603)
...|+|.|++|+|||+|++.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999998853
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=81.83 E-value=0.71 Score=43.19 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5999999999999999998753
No 486
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.68 E-value=0.76 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
+.-+.|.||.|+|||||++.|..+.++
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 456999999999999999999998864
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=81.60 E-value=0.56 Score=43.17 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999987643
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.52 E-value=0.54 Score=50.40 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCcc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~~ 161 (603)
..|+|.|++|+||||++..|+..+... -.....+.||+..+..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~~r~~a~ 143 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTYRPAAY 143 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCCCTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccccCchHH
Confidence 359999999999999999999876321 11234567777766554
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=81.43 E-value=0.73 Score=42.96 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|.+|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999998864
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=81.34 E-value=0.84 Score=43.36 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.0
Q ss_pred cEEEECCCCChHHHHHHHHHHh
Q 007444 118 GIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~ 139 (603)
.|+|.|++|+|||+|++.+...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=81.24 E-value=0.79 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
=|.|.|..|+||||.++.|+..|.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 378899999999999999998874
No 492
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.15 E-value=0.61 Score=50.01 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCCCeeeccccccCCCCCCCc
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~~~~~~~~~~n~~~~~~~~ 160 (603)
.-|+|.|+.|+||||++-.|+..+....-.....+.||+..+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH
Confidence 34889999999999999999977643212233457777765543
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=81.13 E-value=0.73 Score=43.56 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.8
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q 007444 117 GGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~ 138 (603)
-.|+|.|++|+|||+|++.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999874
No 494
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=81.10 E-value=0.66 Score=43.09 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAIL 140 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l 140 (603)
-.|+|.|.+|+|||+|++.+....
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 359999999999999999776543
No 495
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=81.08 E-value=0.79 Score=46.38 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.4
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-+.|.|+.|+||||+++.|+..+.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 477889999999999999998874
No 496
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=80.99 E-value=0.79 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q 007444 116 IGGIAISGRRGTAKTVMARGLHA 138 (603)
Q Consensus 116 ~~gVLL~GppGTGKT~lArala~ 138 (603)
...|+|.|++|+|||+|+..+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999998864
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=80.93 E-value=0.78 Score=42.98 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|++|+|||+|++.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999988753
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=80.93 E-value=0.73 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHhCC
Q 007444 118 GIAISGRRGTAKTVMARGLHAILP 141 (603)
Q Consensus 118 gVLL~GppGTGKT~lArala~~l~ 141 (603)
-|+|.|.+|+||||+++.|+..+.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998763
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=80.70 E-value=0.69 Score=51.02 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=23.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHhCCC
Q 007444 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~l~~ 142 (603)
.-+.|.||.|+|||||++.|+.++++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44889999999999999999998864
No 500
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=80.64 E-value=0.9 Score=43.02 Aligned_cols=23 Identities=22% Similarity=0.162 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHh
Q 007444 117 GGIAISGRRGTAKTVMARGLHAI 139 (603)
Q Consensus 117 ~gVLL~GppGTGKT~lArala~~ 139 (603)
-.|+|.|.+|+|||+|++.+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999988753
Done!