Query 007445
Match_columns 603
No_of_seqs 209 out of 796
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 23:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 2.1E-85 4.5E-90 694.5 25.7 349 1-379 155-505 (589)
2 PF07944 DUF1680: Putative gly 100.0 1.2E-83 2.7E-88 716.5 35.1 357 1-375 149-520 (520)
3 PF05270 AbfB: Alpha-L-arabino 99.7 6.2E-18 1.3E-22 158.1 10.1 111 467-587 2-117 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.4 9.4E-13 2E-17 123.4 10.0 125 418-561 13-142 (142)
5 cd00249 AGE AGE domain; N-acyl 97.6 0.00042 9.2E-09 74.4 11.6 158 34-198 118-289 (384)
6 cd00249 AGE AGE domain; N-acyl 97.2 0.0042 9.1E-08 66.7 13.4 175 37-222 179-374 (384)
7 PF03663 Glyco_hydro_76: Glyco 97.2 0.00059 1.3E-08 74.0 6.2 128 38-178 95-251 (370)
8 PF03663 Glyco_hydro_76: Glyco 97.0 0.00049 1.1E-08 74.6 3.9 145 24-183 34-189 (370)
9 PF07944 DUF1680: Putative gly 96.9 0.0022 4.8E-08 72.6 7.8 137 34-181 128-267 (520)
10 COG1331 Highly conserved prote 96.3 0.025 5.5E-07 65.0 10.9 144 33-184 413-573 (667)
11 PF07470 Glyco_hydro_88: Glyco 96.3 0.013 2.8E-07 62.4 8.2 140 33-193 27-168 (336)
12 COG4225 Predicted unsaturated 95.1 0.095 2.1E-06 55.8 9.0 143 31-193 36-179 (357)
13 PF06662 C5-epim_C: D-glucuron 95.1 0.077 1.7E-06 52.5 7.9 135 34-175 33-186 (189)
14 cd04791 LanC_SerThrkinase Lant 94.3 0.27 5.9E-06 51.4 10.1 127 34-184 142-276 (321)
15 PF07221 GlcNAc_2-epim: N-acyl 93.8 0.071 1.5E-06 56.9 4.7 157 38-198 88-262 (346)
16 cd04791 LanC_SerThrkinase Lant 93.8 0.41 8.8E-06 50.1 10.3 133 34-178 86-227 (321)
17 COG3533 Uncharacterized protei 93.3 0.087 1.9E-06 58.6 4.4 122 34-180 134-260 (589)
18 PF07221 GlcNAc_2-epim: N-acyl 80.3 1.6 3.4E-05 46.6 3.6 131 36-177 26-168 (346)
19 PF15095 IL33: Interleukin 33; 78.1 36 0.00079 34.6 11.9 89 439-531 156-246 (268)
20 PF01532 Glyco_hydro_47: Glyco 77.0 5.7 0.00012 44.5 6.8 143 31-179 144-310 (452)
21 cd04792 LanM-like LanM-like pr 75.7 12 0.00027 44.8 9.6 127 34-177 544-672 (825)
22 COG1331 Highly conserved prote 74.7 8 0.00017 45.1 7.3 78 34-112 471-566 (667)
23 PTZ00470 glycoside hydrolase f 70.3 32 0.0007 39.4 10.8 80 38-117 162-258 (522)
24 cd04792 LanM-like LanM-like pr 65.7 21 0.00046 42.8 8.6 118 34-179 494-618 (825)
25 PF07470 Glyco_hydro_88: Glyco 63.9 12 0.00026 39.8 5.5 84 86-195 30-113 (336)
26 PTZ00470 glycoside hydrolase f 62.3 22 0.00048 40.7 7.5 94 82-177 156-251 (522)
27 TIGR02474 pec_lyase pectate ly 61.7 8.2 0.00018 40.8 3.6 51 148-201 44-94 (290)
28 COG4225 Predicted unsaturated 59.0 10 0.00022 40.9 3.7 72 81-176 36-107 (357)
29 cd04434 LanC_like LanC-like pr 58.9 71 0.0015 33.0 10.2 128 34-183 162-300 (343)
30 cd04794 euk_LANCL eukaryotic L 56.7 69 0.0015 34.1 9.8 125 35-180 169-302 (343)
31 PF01532 Glyco_hydro_47: Glyco 55.7 42 0.00092 37.6 8.2 126 38-177 84-240 (452)
32 cd04794 euk_LANCL eukaryotic L 55.7 27 0.00059 37.2 6.5 77 34-116 227-305 (343)
33 PF09492 Pec_lyase: Pectic aci 55.3 32 0.00069 36.5 6.7 89 90-185 48-145 (289)
34 TIGR02474 pec_lyase pectate ly 50.7 61 0.0013 34.4 7.9 90 90-186 53-151 (290)
35 cd04793 LanC LanC is the cycla 49.9 26 0.00056 37.9 5.3 79 34-115 247-327 (382)
36 PF06917 Pectate_lyase_2: Peri 49.9 21 0.00046 40.3 4.5 84 38-124 391-479 (557)
37 PHA02651 IL-1 receptor antagon 45.2 15 0.00034 35.6 2.3 39 502-543 105-143 (165)
38 cd04434 LanC_like LanC-like pr 43.5 40 0.00087 34.9 5.3 76 34-114 222-299 (343)
39 KOG2244 Highly conserved prote 43.2 92 0.002 35.9 8.1 138 34-177 508-672 (786)
40 COG4403 LcnDR2 Lantibiotic mod 42.7 28 0.00061 41.9 4.3 71 36-108 747-820 (963)
41 PF00759 Glyco_hydro_9: Glycos 41.5 58 0.0013 36.0 6.5 24 38-61 222-245 (444)
42 KOG2787 Lanthionine synthetase 41.2 41 0.00088 36.2 4.8 73 34-116 283-361 (403)
43 cd04793 LanC LanC is the cycla 40.8 2.2E+02 0.0047 30.7 10.7 129 35-181 176-326 (382)
44 COG2942 N-acyl-D-glucosamine 2 38.8 1.6E+02 0.0036 32.5 9.1 116 79-197 172-288 (388)
45 TIGR03000 plancto_dom_1 Planct 38.3 1.8E+02 0.004 24.7 7.3 22 296-322 3-24 (75)
46 PF09586 YfhO: Bacterial membr 38.3 81 0.0018 37.8 7.5 58 282-345 773-831 (843)
47 COG1188 Ribosome-associated he 37.5 67 0.0014 28.8 4.9 48 298-354 7-68 (100)
48 PF05726 Pirin_C: Pirin C-term 33.3 63 0.0014 28.5 4.2 54 312-375 30-86 (104)
49 cd00100 IL1 Interleukin-1 homo 32.6 27 0.00059 33.3 1.8 28 514-543 103-130 (144)
50 PF00340 IL1: Interleukin-1 / 32.2 36 0.00078 31.3 2.5 28 515-544 80-107 (120)
51 smart00125 IL1 Interleukin-1 h 29.8 32 0.00069 32.9 1.7 28 514-543 106-133 (147)
52 TIGR00187 ribE riboflavin synt 29.6 1.5E+02 0.0033 29.7 6.6 54 295-349 21-90 (200)
53 PRK09289 riboflavin synthase s 29.4 1.7E+02 0.0037 29.2 6.9 53 296-349 22-89 (194)
54 PF08547 CIA30: Complex I inte 28.8 3.2E+02 0.0069 25.8 8.4 53 549-601 47-103 (157)
55 PF14200 RicinB_lectin_2: Rici 27.8 3.5E+02 0.0077 23.3 8.0 43 497-543 48-91 (105)
56 PLN00119 endoglucanase 27.5 1.2E+02 0.0026 34.6 6.1 63 101-176 203-265 (489)
57 PHA02811 putative host range p 26.1 92 0.002 30.9 4.2 40 282-323 32-74 (197)
58 PF03287 Pox_C7_F8A: Poxvirus 26.0 1E+02 0.0022 29.6 4.3 40 282-323 32-74 (149)
59 PRK13020 riboflavin synthase s 25.2 1.9E+02 0.0041 29.2 6.4 55 295-349 21-90 (206)
60 KOG2787 Lanthionine synthetase 25.1 49 0.0011 35.7 2.2 24 38-61 333-356 (403)
61 PF06662 C5-epim_C: D-glucuron 25.0 67 0.0014 32.0 3.1 76 90-174 39-121 (189)
62 PF11020 DUF2610: Domain of un 24.4 63 0.0014 27.8 2.4 21 29-49 38-63 (82)
63 COG2942 N-acyl-D-glucosamine 2 23.5 2.9E+02 0.0063 30.6 7.8 129 38-177 181-332 (388)
64 COG3603 Uncharacterized conser 23.3 1.5E+02 0.0032 27.6 4.7 32 297-348 20-51 (128)
65 PF09492 Pec_lyase: Pectic aci 22.6 54 0.0012 34.8 2.1 50 148-200 39-88 (289)
66 KOG2431 1, 2-alpha-mannosidase 20.6 1.3E+02 0.0029 33.6 4.5 113 82-199 176-292 (546)
67 PF05147 LANC_like: Lanthionin 20.4 1E+02 0.0022 32.3 3.6 121 35-177 171-303 (355)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.1e-85 Score=694.49 Aligned_cols=349 Identities=26% Similarity=0.457 Sum_probs=320.6
Q ss_pred ChHHHHHHHHHHHHhhhhhccHHHHHHHhhhcccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCccc
Q 007445 1 MTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHS 80 (603)
Q Consensus 1 ~~~~m~~~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~ha 80 (603)
|+.++|||+.+ ++....+ |.++-+++++|+++|++||++|||+|||+||++|.++...+|++.+.|.+.+.||
T Consensus 155 V~~rlADhi~t----vfgp~~~---q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA 227 (589)
T COG3533 155 VVCRLADHIAT----VFGPEED---QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA 227 (589)
T ss_pred HHHHHHHhhhh----hcCcccc---ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence 46678888865 6666665 4557899999999999999999999999999999999999999999999999999
Q ss_pred ccccceehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCC-CCCCCCCcccccCCCCCccccchhHHHHHHHHH
Q 007445 81 NTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRH 159 (603)
Q Consensus 81 nthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~-~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~ 159 (603)
++.||+.+|+|++|+++||+.+++++.+||++|+++|+|+|||+|+ .|+|+.+|+|++ .+.|+|||+|||||||++|
T Consensus 228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~R 305 (589)
T COG3533 228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARR 305 (589)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 599999999998 6799999999999999999
Q ss_pred HHhhcCCCchHHHHHHHHhccccccCCCCCCCcEEEecCCCCCCCCccCcCCCCCCCCCccccCCCCCCcccccccceEE
Q 007445 160 LFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYF 239 (603)
Q Consensus 160 Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~g~~~Y~~Pl~~g~~k~~~~~~~~t~~~~f~CC~gtg~e~~~kl~~~iY~ 239 (603)
||.+++|.+|||+|||+|||++|++|++ |+|+|+|+|||..+.. +...++.+||||.||+.|.++++++|||.
T Consensus 306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~ 378 (589)
T COG3533 306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYT 378 (589)
T ss_pred HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEc
Confidence 9999999999999999999999999997 9999999999975542 22456788999999999999999999999
Q ss_pred eecCCCCcEEEEEeeCcEEEEEeCceEEEEEeCCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCee
Q 007445 240 EEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQD 319 (603)
Q Consensus 240 ~~~~~~~~LyVnLYipS~~~~~~~gv~v~q~t~~~yp~~~~~~V~l~v~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~ 319 (603)
..+ ++||||||+.|+++.+..++.|+|+|+ |||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.
T Consensus 379 ~~~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~ 448 (589)
T COG3533 379 RAD---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKE 448 (589)
T ss_pred cCC---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcc
Confidence 976 689999999999999988899999988 99999 999999986 7899999999999999 7999999988
Q ss_pred cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeE-EEeecceeeeeecc
Q 007445 320 LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQ-AILYGPYVLAGHSI 379 (603)
Q Consensus 320 ~~~~~~ggy~~I~R~W~~GD~I~L~Lpm~lr~~~~~d~~~~~~~~v-Av~rGPlVlA~~~~ 379 (603)
+.....+||++|+|.|++||+|+|.|||++|+...|+++.. + ||+|||||||++..
T Consensus 449 ~~~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~----~GAi~rGPlVyc~e~~ 505 (589)
T COG3533 449 VIQTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD----VGAIMRGPLVYCAEAG 505 (589)
T ss_pred hhhccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh----hhhhhcCCeEEEEecC
Confidence 87777899999999999999999999999999888887654 4 99999999998654
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.2e-83 Score=716.51 Aligned_cols=357 Identities=35% Similarity=0.629 Sum_probs=326.8
Q ss_pred ChHHHHHHHHHHHHhhhhhccHHHHHHHhhhcccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchh--hhhcCCCCCCc
Q 007445 1 MTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGF 78 (603)
Q Consensus 1 ~~~~m~~~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~--l~~~~D~l~g~ 78 (603)
|+.+|+||+.+++. .++.++++.++..|+||||++|++||++|||++||+||++|++..++++ +....|.+++.
T Consensus 149 v~~k~ad~~~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~ 224 (520)
T PF07944_consen 149 VATKLADWVYRRLS----RLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGR 224 (520)
T ss_pred HHHHHHHHHHHHhc----cCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCc
Confidence 47899999976544 5666677677779999999999999999999999999999999999998 88999999999
Q ss_pred ccccccceeh-------hHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCC---CCCCCCcccccCCCCCccccc
Q 007445 79 HSNTHIPIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESC 148 (603)
Q Consensus 79 hanthip~~~-------G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~---E~f~~p~~l~~~l~~~~~ETC 148 (603)
|+|+|+|.++ |++++|++|||+.|++++++||++|+++|||+|||+|++ |+|++++++++ ...++|||
T Consensus 225 ~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtC 302 (520)
T PF07944_consen 225 HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETC 302 (520)
T ss_pred cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCcccc
Confidence 9999999988 999999999999999999999999999999999999999 99999999987 45569999
Q ss_pred hhHHHHHHHHHHHhhcCCCchHHHHHHHHhccccccCCCCCCCcEEEecCCCCCCCCccCcCCCCCCCCCccccCCCCCC
Q 007445 149 TTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIE 228 (603)
Q Consensus 149 as~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~g~~~Y~~Pl~~g~~k~~~~~~~~t~~~~f~CC~gtg~e 228 (603)
++||||||+++||++|||++|+|+|||++||++||++++ |++.++|++||+++..|... ..+.+++++||||+||++|
T Consensus 303 as~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r 380 (520)
T PF07944_consen 303 ASVNMMKLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGAR 380 (520)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHH
Confidence 999999999999999999999999999999999999997 99999999999887655322 3566788899999999999
Q ss_pred cccccccceEEeecCCCCcEEEEEeeCcEEEEEeCc--eEEEEEeCCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCc
Q 007445 229 SFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWT 306 (603)
Q Consensus 229 ~~~kl~~~iY~~~~~~~~~LyVnLYipS~~~~~~~g--v~v~q~t~~~yp~~~~~~V~l~v~~~~~~~~ftL~LRIP~Wa 306 (603)
+++||+++||++++ ++||||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+||
T Consensus 381 ~~~~~~~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa 452 (520)
T PF07944_consen 381 GWAKLPDYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWA 452 (520)
T ss_pred HHHHHhhhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCC
Confidence 99999999999985 6999999999999999988 77777776 99999 899999774 689999999999999
Q ss_pred cCCCcEEEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeee
Q 007445 307 SSNGAKATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 375 (603)
Q Consensus 307 ~~~~~~v~VNG~~-~~~~~~ggy~~I~R~W~~GD~I~L~Lpm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 375 (603)
+ +++|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.++.+.+.+||+|||||||
T Consensus 453 ~--~~~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 453 K--GATIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred C--CcEEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 8 7999999999 55667999999999999999999999999999999777777789999999999997
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.74 E-value=6.2e-18 Score=158.06 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=89.7
Q ss_pred eeeecCCCCCCceEEeecCceeEEEecCCCCC-----CCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEE
Q 007445 467 SVMLEPFDSPGMLVIQHETDDELVVTDSFIAQ-----GSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTK 541 (603)
Q Consensus 467 ~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~-----~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~ 541 (603)
+++++++++|++||||.|..++| ++..++. .|++|+|||||++ +++|||||+++||.||||. +..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~--~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh~-----~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRL--DPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRHS-----NFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEE--EES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEEE-----TTEEE
T ss_pred eEEEECCCCCCeEEEEcCceEEE--eeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEEE-----CCEEE
Confidence 47899999999999999977666 4444444 4899999999998 6899999999999999996 99999
Q ss_pred EEeecCCCccccccccceeeccCCCccCCceEEEecCCCceeeccc
Q 007445 542 LGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPL 587 (603)
Q Consensus 542 l~~~~~~~~~~f~~~asF~~~~gl~~y~piSf~a~g~~~~~ll~pl 587 (603)
|+ + +++++.|.++|+|...+||+...-+||+...-+..||.+=-
T Consensus 74 l~-~-~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~ 117 (142)
T PF05270_consen 74 LE-K-NDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYN 117 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEET
T ss_pred Ee-e-cCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEEC
Confidence 99 4 48889999999999999999955579999999999997543
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.41 E-value=9.4e-13 Score=123.35 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=87.3
Q ss_pred EEEecCCCceEeeecCCC-CCccccceEEEEEecCCCCCccccccCCCCceeeecCCCCCCceEEeecCceeEEEecCCC
Q 007445 418 FVLTNSNQSITMEKFPKS-GTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFI 496 (603)
Q Consensus 418 ~~~~~~~~~~~~~~~p~~-g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~ 496 (603)
-.+.+.+..+.+.+.... ++-....++||++.+-.+ ...|.+|+-|.||.||||.+ .+|.++.+..
T Consensus 13 ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~~--~~v~l~~~d~ 79 (142)
T PF05270_consen 13 RYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHSN--FRVRLEKNDG 79 (142)
T ss_dssp EEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEET--TEEEEEE--S
T ss_pred eEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEEC--CEEEEeecCC
Confidence 345666777777774433 333455799999865322 23789999999999999987 4455455443
Q ss_pred C---CCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeec-CCCccccccccceee
Q 007445 497 A---QGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCIS-ESTEAGFNNAASFVI 561 (603)
Q Consensus 497 ~---~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~~~~-~~~~~~f~~~asF~~ 561 (603)
+ ..|+.|..+|||.+ +|.|||||.++||+||||. +..++|.-.+ .+.++.|+++|||+.
T Consensus 80 s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 80 SALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLAPIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEEESSSGG-SHHHHHHT-EEE
T ss_pred CccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEecCCCcCcchhhccccEEeC
Confidence 3 37889999999999 7999999999999999997 8899999311 134677999999974
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.61 E-value=0.00042 Score=74.39 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=95.3
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhccc---CCc-------chhhhhcCCCCCCcccccccceehhHhHHHHHhCChhHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDK---PCF-------LGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHK 103 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~---~~~-------~~~l~~~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~ 103 (603)
.=+..+|.+||++|||++||++|+...+ ..+ +.....+....++ .|.|.-.+.+...++++|||+.|+
T Consensus 118 a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tgd~~~~ 195 (384)
T cd00249 118 AFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATGEQKYL 195 (384)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhCCHHHH
Confidence 3344788899999999999999976521 111 1111000111222 344554567788889999999999
Q ss_pred HHHHHHHHHHhhcceee--ecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 007445 104 TISMFFMDIVNSSHTYA--TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGV 181 (603)
Q Consensus 104 ~aa~~fwd~v~~~h~y~--tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~v 181 (603)
+.++..++.+.+ +++- .|+.- |++..+..+.........+---..+++++.-+|.++++|.+|.+.+++. ++.+
T Consensus 196 ~~A~~l~~~~~~-~~~~~~~G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~-~~~~ 271 (384)
T cd00249 196 DRADEIADLILD-RFIDAESGVVR--EHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL-FDLA 271 (384)
T ss_pred HHHHHHHHHHHH-HhcCcccCeEE--EEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHHH
Confidence 999999998875 4442 45542 5543221111100111122222345667777888899999999999774 5666
Q ss_pred ccc-CCCCCCCcEEE-ecC
Q 007445 182 LGI-QRGTEPGVMIY-LLP 198 (603)
Q Consensus 182 la~-q~~~~~g~~~Y-~~P 198 (603)
+.. .++ +.|.++| ..+
T Consensus 272 ~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 272 LALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHhCcCc-cCCCEEEeeEC
Confidence 653 344 5566766 544
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.22 E-value=0.0042 Score=66.73 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=99.2
Q ss_pred hHHHHHHHhHcCCHHHHHHHhhccc---CCcchh----hhhc-CCCCCCccc--cccc-c-----eehhHhHHHHHhCCh
Q 007445 37 NDVLYKLFCITQDPKHLMLAHLFDK---PCFLGL----LALQ-ADDISGFHS--NTHI-P-----IVIGSQMRYEVTGDQ 100 (603)
Q Consensus 37 ne~L~~LY~iTGd~~yL~lA~~F~~---~~~~~~----l~~~-~D~l~g~ha--nthi-p-----~~~G~a~~Y~~Tgd~ 100 (603)
.++|.+||++|||++|++.|+.+.+ +.+.++ +... .+...-... ...+ | .+.....+++++||+
T Consensus 179 ~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~ 258 (384)
T cd00249 179 LEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQA 258 (384)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCH
Confidence 4789999999999999999976532 111110 0000 111000000 0111 2 123456779999999
Q ss_pred hHHHHHHHHHHHHhhccee-e-ecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHH--
Q 007445 101 LHKTISMFFMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS-- 176 (603)
Q Consensus 101 ~y~~aa~~fwd~v~~~h~y-~-tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERa-- 176 (603)
.|++.++..|+.+.+ +.. . .||+-. .+.++...+ ...+.-.....++++....|++++||++|.+.+++.
T Consensus 259 ~~~~~a~~~~~~~~~-~~~d~~~G~~~~--~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~ 332 (384)
T cd00249 259 WLIEKARRLFDLALA-LGWDPERGGLYY--SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWA 332 (384)
T ss_pred HHHHHHHHHHHHHHH-hCcCccCCCEEE--eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999998875 333 2 232211 011111111 123444555778888899999999999999999887
Q ss_pred -HhccccccCCCCCCCcEEEecCCCCCCCCccCcCCCCCCCCCcccc
Q 007445 177 -LTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCC 222 (603)
Q Consensus 177 -lyN~vla~q~~~~~g~~~Y~~Pl~~g~~k~~~~~~~~t~~~~f~CC 222 (603)
+++..+... .++.+.+..+-+.-.... . .+|.+.++.+-||
T Consensus 333 ~~~~~~~d~~---~G~w~~~~~~~g~~~~~~-~-~~~~~~yH~~~a~ 374 (384)
T cd00249 333 YLWRHFIDPE---YGLWFGYLDADGKVLLTP-K-GPAKTFYHVVRAL 374 (384)
T ss_pred HHHHhcCCCC---CCcceeeECCCCCCcCCC-C-CCCCCCccHHhHH
Confidence 455444333 235556665543211111 0 3565666666665
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.16 E-value=0.00059 Score=73.99 Aligned_cols=128 Identities=25% Similarity=0.199 Sum_probs=72.7
Q ss_pred HHHHHHHhHcCCH-----HHHHHHhhcccCCcchhhhhcCCC-C--CCccc--------------ccccceehhHhHHHH
Q 007445 38 DVLYKLFCITQDP-----KHLMLAHLFDKPCFLGLLALQADD-I--SGFHS--------------NTHIPIVIGSQMRYE 95 (603)
Q Consensus 38 e~L~~LY~iTGd~-----~yL~lA~~F~~~~~~~~l~~~~D~-l--~g~ha--------------nthip~~~G~a~~Y~ 95 (603)
.++.++|++||++ +||++|+...+. +..+-|. . .|+.. .+.-|.++.++++|+
T Consensus 95 la~l~aye~t~~~~~~~~~yL~~A~~i~~~-----~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~ 169 (370)
T PF03663_consen 95 LALLRAYELTGDQPSDNPKYLDLAKEIFDF-----LISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR 169 (370)
T ss_dssp HHHHHHHHHH--H-----HHHHHHHHHHHH-----HHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHH-----HHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence 7899999999999 999999987321 1011111 1 12221 222333466889999
Q ss_pred HhCChhHHHHHHHHHHHHhhccee-e-ecCCCCCCCCCCCcccccCC-CCCccccchhHH---HHHHHHHHHhhcCCC-c
Q 007445 96 VTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNL-DSNTEESCTTYN---MLKVSRHLFRWTKEI-A 168 (603)
Q Consensus 96 ~Tgd~~y~~aa~~fwd~v~~~h~y-~-tGG~g~~E~f~~p~~l~~~l-~~~~~ETCas~n---mlkl~~~Lf~~tgD~-~ 168 (603)
+|||+.|++.|+..|+.+.+.+++ . +|-+-.+ +...- -....++--||| +|.-+..|++.|++. .
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg--------~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~ 241 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDG--------INIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQT 241 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH-HHB--TTS-B--E--------E-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-H
T ss_pred hcCChHHHHHHHHHHHHhhcceeEECCCcEEEeC--------CccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccH
Confidence 999999999999999999865555 1 1211111 11000 011233333444 677788999999876 9
Q ss_pred hHHHHHHHHh
Q 007445 169 YADYYERSLT 178 (603)
Q Consensus 169 YaD~~ERaly 178 (603)
|.|..++.+-
T Consensus 242 yl~~A~~la~ 251 (370)
T PF03663_consen 242 YLDRAEKLAD 251 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.02 E-value=0.00049 Score=74.60 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=87.8
Q ss_pred HHHHHhhhcccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCC-CCCCc----ccccccc-eehhHhHHHHHh
Q 007445 24 RHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQAD-DISGF----HSNTHIP-IVIGSQMRYEVT 97 (603)
Q Consensus 24 ~~~~~l~~E~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D-~l~g~----hanthip-~~~G~a~~Y~~T 97 (603)
.||. .|.|.++|++.|++|||++|.++......... + ...+ -.... -.+...- +.+++++.|++|
T Consensus 34 ~~W~-----~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~DD~aw~~la~l~aye~t 104 (370)
T PF03663_consen 34 YWWW-----QAVMLSALIDYYRRTGDPTYNDLIQNALLNQR-G---PNYDSYNPSNGSGDRYYDDNAWWALALLRAYELT 104 (370)
T ss_dssp H-HH-----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-H---HTTSSS--S------BHHHHHHHHHHHHHHHHHH
T ss_pred CcCh-----HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHh-c---ccccccccccccccCccChHHHHHHHHHHHHHhh
Confidence 4566 57888999999999999999999886532100 0 0001 00000 0111111 346788889999
Q ss_pred CCh-----hHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHH
Q 007445 98 GDQ-----LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 172 (603)
Q Consensus 98 gd~-----~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~ 172 (603)
|++ +|++.|+..|+.+.. ..-+...|++=+|..... .....+--+|+.--.+.++-+|++.|+|.+|+|.
T Consensus 105 ~~~~~~~~~yL~~A~~i~~~~~~--~wd~~~cgGGi~W~~~~~---~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~ 179 (370)
T PF03663_consen 105 GDQPSDNPKYLDLAKEIFDFLIS--GWDDTSCGGGIWWSIDDT---NSGYDYKNAISNGPAAQLAARLYRITGDQTYLDW 179 (370)
T ss_dssp --H-----HHHHHHHHHHHHHHH--TB-SGG-GS-BEEET-------TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHH--hcCCccCCCCcccccccc---CCCCCcccccchHHHHHHHHHHHHhcCChHHHHH
Confidence 999 999999999998863 333322233333432100 0124577889999999999999999999999999
Q ss_pred HHHHHhccccc
Q 007445 173 YERSLTNGVLG 183 (603)
Q Consensus 173 ~ERalyN~vla 183 (603)
.+++ ||=+..
T Consensus 180 A~~~-~~W~~~ 189 (370)
T PF03663_consen 180 AKKI-YDWMRD 189 (370)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHhhc
Confidence 9987 444444
No 9
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.89 E-value=0.0022 Score=72.62 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=82.6
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhh-hcCCCCCCcccccccceehhHhHHHHHhCChhHHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLA-LQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDI 112 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~-~~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~ 112 (603)
|-|.++|+.-|+.|||++.|+.|.+|-+- +...+. .+.+.+.......|-=+..+.+++|++|||++|++.|+.|.+.
T Consensus 128 ~~ll~gl~~~y~~tG~~~~L~v~~k~ad~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 128 GKLLEGLIDYYEATGNERALDVATKLADW-VYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred hHHHHHHHHHHHHHCcHHHHHHHHHHHHH-HHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44669999999999999999999998541 100000 0000000111123333457899999999999999999999875
Q ss_pred HhhcceeeecCCCCCCCCCCCcccccCCCCCccccchh--HHHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 007445 113 VNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAYADYYERSLTNGV 181 (603)
Q Consensus 113 v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas--~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~v 181 (603)
-...- .+ .+.. .+.++.. .....+..+. ..+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 207 ~~~~~------~~-~~~~--~d~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 207 RGFDP------YD-LAYG--QDHLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred hCCCC------Cc-hhhc--CccCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 32111 11 1111 1112221 1122222222 3455566789999999999999999876644
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.025 Score=64.95 Aligned_cols=144 Identities=19% Similarity=0.097 Sum_probs=88.3
Q ss_pred ccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCccccc----------ccceehhHhHHHHHhCChhH
Q 007445 33 AGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNT----------HIPIVIGSQMRYEVTGDQLH 102 (603)
Q Consensus 33 ~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hant----------hip~~~G~a~~Y~~Tgd~~y 102 (603)
=|=|..+|++.++++||++||+.|++-..- +.+.+ ..|.|...+-.. +.-.+.|...+|++|+|.+|
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~f-i~~~l--~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~y 489 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADF-ILDNL--YVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhh--cccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHH
Confidence 366789999999999999999999985320 00111 112222222222 22234678889999999999
Q ss_pred HHHHHHHHHHHhhccee-eecCC----CCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 007445 103 KTISMFFMDIVNSSHTY-ATGGT----SVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 177 (603)
Q Consensus 103 ~~aa~~fwd~v~~~h~y-~tGG~----g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (603)
++.|+.+++.+.. +.. ..||. +.+|..-.+ +....+.-.++=+++.. .-.-+|-++|+|.+|.|..|++|
T Consensus 490 L~~A~~L~~~~i~-~f~d~~gGf~~t~~~~~~l~ir---~~~~~D~a~~S~na~~~-~~L~~Ls~ltg~~~y~e~A~~~L 564 (667)
T COG1331 490 LEKAIELADEAIA-DFWDDEGGFYDTPSDSEDLLIR---PKEPTDGATPSGNAVAA-QALLRLSLLTGDARYLEAAEDIL 564 (667)
T ss_pred HHHHHHHHHHHHH-HhcCCCCCcccCCCcccccccC---CCCCCCCCCCCHHHHHH-HHHHHHHhhcCchhHHHHHHHHH
Confidence 9999999999874 333 33342 112221000 01111223344444433 34456788999999999999998
Q ss_pred --hcccccc
Q 007445 178 --TNGVLGI 184 (603)
Q Consensus 178 --yN~vla~ 184 (603)
|=+.+..
T Consensus 565 ~a~~~~~~~ 573 (667)
T COG1331 565 QAFAGLAER 573 (667)
T ss_pred HHHHHHHHh
Confidence 6555554
No 11
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.28 E-value=0.013 Score=62.41 Aligned_cols=140 Identities=17% Similarity=0.068 Sum_probs=80.1
Q ss_pred ccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccceehhHhHHHHHhCChhHHHHHHHHHH-
Q 007445 33 AGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD- 111 (603)
Q Consensus 33 ~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd- 111 (603)
.|.+-..|.++|+.|||++|++.|+.+.+..+ +.... ..+.+.| .+.......|+.|+|++|++++....+
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~-~~~~~------~~~~d~~-~~g~~~~~~y~~t~d~~y~~~~~~~a~~ 98 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFI-EEDGS------DYNLDDH-DIGFLLLDLYERTGDEKYKDAAIQAADW 98 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHT------TTSCCGT-THHHHHHHHHHHH-THHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hccCC------ccCCchh-hhHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34466788999999999999999998654221 11111 1122233 334445778999999999999999999
Q ss_pred HHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHH-HHHHHHHHHhhcCCCchHHHHHHHHhccccccCCCCCC
Q 007445 112 IVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYN-MLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEP 190 (603)
Q Consensus 112 ~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~n-mlkl~~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~ 190 (603)
++.+..--..||+...+. ....--|-+.- .+-+.-++...|||++|.|.+.+-+-...--..++ +.
T Consensus 99 ~l~~~~~~~~G~~~~~~~------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~t 165 (336)
T PF07470_consen 99 LLARRPRTSDGGFWHNRP------------YPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ET 165 (336)
T ss_dssp HHHTSCBECTGCBECTTT------------STTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TT
T ss_pred HHHhCCCCCCCccccCCC------------CCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CC
Confidence 554333224566644111 00111122221 22344556889999999998877655443334444 44
Q ss_pred CcE
Q 007445 191 GVM 193 (603)
Q Consensus 191 g~~ 193 (603)
|.+
T Consensus 166 Gl~ 168 (336)
T PF07470_consen 166 GLY 168 (336)
T ss_dssp SSB
T ss_pred Cce
Confidence 444
No 12
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.13 E-value=0.095 Score=55.84 Aligned_cols=143 Identities=16% Similarity=0.025 Sum_probs=86.1
Q ss_pred hcccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccceehhHhHHHHHhCChhHHHHHHHHH
Q 007445 31 EEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFM 110 (603)
Q Consensus 31 ~E~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~~aa~~fw 110 (603)
=|.|-.-..++++|+.|||++||+..+...+..+... -++. ..-.||-.-.=..-+|+.|||++|++++..+-
T Consensus 36 we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~~-~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 36 WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLPP-RNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCCc-cchhhhccCceeeehhhhhCCHHHHHHHHHHH
Confidence 3567777999999999999999999887644333221 0111 11122222222556799999999999999999
Q ss_pred HHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHH-HHHHHHHHhhcCCCchHHHHHHHHhccccccCCCCC
Q 007445 111 DIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNM-LKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTE 189 (603)
Q Consensus 111 d~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nm-lkl~~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~ 189 (603)
+.++. +. -| +.+-+|+... .+ ..==|.+--| .-+.-++=+.+++++|+|.+=+.+-=+.---++| +
T Consensus 109 ~~l~~-~~-Rt---~eG~f~H~~~-~p------~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp-~ 175 (357)
T COG4225 109 SWLVH-EP-RT---KEGGFQHKVK-YP------HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP-E 175 (357)
T ss_pred HHHhh-Cc-cc---CCCccccccC-ch------hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC-C
Confidence 98873 44 22 2233333321 01 1111222111 1233445677899999999888877666555666 5
Q ss_pred CCcE
Q 007445 190 PGVM 193 (603)
Q Consensus 190 ~g~~ 193 (603)
+|.|
T Consensus 176 TGL~ 179 (357)
T COG4225 176 TGLY 179 (357)
T ss_pred cCce
Confidence 5544
No 13
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.13 E-value=0.077 Score=52.54 Aligned_cols=135 Identities=20% Similarity=0.143 Sum_probs=78.0
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhc------CCCCCC--cc--------cccccceehhHhHHHHHh
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ------ADDISG--FH--------SNTHIPIVIGSQMRYEVT 97 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~------~D~l~g--~h--------anthip~~~G~a~~Y~~T 97 (603)
|-...+|+|.|++|||++||+.|++..+. |.-+..++ .+.... ++ -|.||-..+|.-+.+..|
T Consensus 33 G~a~s~l~RAy~~t~d~~Yl~aA~~al~~-f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~ 111 (189)
T PF06662_consen 33 GQAISVLARAYQLTGDEKYLDAAKKALNS-FKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLT 111 (189)
T ss_pred HHHHHHHHHHHHhHCCHHHHHHHHHHHHH-hcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhc
Confidence 44458999999999999999999996432 11111111 010100 11 133333446777778899
Q ss_pred CChhHHHHHHHHHHHHhhc-ceeeecCCCCCC--CCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHH
Q 007445 98 GDQLHKTISMFFMDIVNSS-HTYATGGTSVGE--FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYE 174 (603)
Q Consensus 98 gd~~y~~aa~~fwd~v~~~-h~y~tGG~g~~E--~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~E 174 (603)
+++..++.-+...+.+... ..|-+|+.+--. |+.. +..++.-+..|.. -.+.....|..+|+|+.+.+++|
T Consensus 112 ~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH~-----lHi~qL~~L~~it~d~~f~~~a~ 185 (189)
T PF06662_consen 112 GDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYHR-----LHIQQLKWLYSITGDPIFKEYAE 185 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHHH-----HHHHHHHHHHHhcCCHHHHHHHH
Confidence 9987776666655554321 367777766422 2221 0111110112221 13456678999999999999999
Q ss_pred H
Q 007445 175 R 175 (603)
Q Consensus 175 R 175 (603)
|
T Consensus 186 r 186 (189)
T PF06662_consen 186 R 186 (189)
T ss_pred H
Confidence 7
No 14
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=94.29 E-value=0.27 Score=51.42 Aligned_cols=127 Identities=15% Similarity=-0.040 Sum_probs=79.6
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccC---Ccchhhhh---cCCCCCCcccccccce--ehhHhHHHHHhCChhHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKP---CFLGLLAL---QADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTI 105 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~---~~~~~l~~---~~D~l~g~hanthip~--~~G~a~~Y~~Tgd~~y~~a 105 (603)
.|+..+|.+||+.|||++|++.|+...+. .+...... .++......+--|-.. +......|++|+|+.|++.
T Consensus 142 aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~ 221 (321)
T cd04791 142 AGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDE 221 (321)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 56779999999999999999999976431 11100000 0000000000111111 1224466899999999999
Q ss_pred HHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 007445 106 SMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 184 (603)
Q Consensus 106 a~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~vla~ 184 (603)
++...+.+.+.- +. ..+=.|.+.+.+.+...+.+.++|.+|.+..++.. ..++..
T Consensus 222 a~~~~~~~~~~~------------~~-----------~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (321)
T cd04791 222 ADGIAHAALSSC------------YA-----------NPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIAT 276 (321)
T ss_pred HHHHHHHHhhhh------------cc-----------CccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccc
Confidence 888888775331 11 12334556777778888899999999999999864 666654
No 15
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=93.80 E-value=0.071 Score=56.88 Aligned_cols=157 Identities=16% Similarity=0.072 Sum_probs=86.6
Q ss_pred HHHHHHHhHcCCHHHHHHHhhcc---cCCcchhhhh------cCCCCCCcccccccceehhHhHHHHHhCChhHHHHHHH
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFD---KPCFLGLLAL------QADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMF 108 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~---~~~~~~~l~~------~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~~aa~~ 108 (603)
.+|++ |..||+++++++|+... ...+.++... ..|.......|.|+-++.....+|++|+|+.|++.++.
T Consensus 88 ~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~ 166 (346)
T PF07221_consen 88 LALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEE 166 (346)
T ss_dssp HHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 67888 88999999999997652 1222222111 11111111356666667778889999999999999999
Q ss_pred HHHHHhhcceeeecCCCCCCCCCCCccc-ccC-----CCCCccccchhHHHHHHHHHHH--hhcCCCchHHHHHHHHhcc
Q 007445 109 FMDIVNSSHTYATGGTSVGEFWSDPKRL-ASN-----LDSNTEESCTTYNMLKVSRHLF--RWTKEIAYADYYERSLTNG 180 (603)
Q Consensus 109 fwd~v~~~h~y~tGG~g~~E~f~~p~~l-~~~-----l~~~~~ETCas~nmlkl~~~Lf--~~tgD~~YaD~~ERalyN~ 180 (603)
..+.+.. +.+....-...|+|..+-.. ++. +.....|-==.++++.+.-++- ...+++++.+..+ .|++.
T Consensus 167 l~~~~~~-~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~-~l~~~ 244 (346)
T PF07221_consen 167 LLDLFLD-RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERAR-RLFDF 244 (346)
T ss_dssp HHHHHHT-TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHH-HHHHH
T ss_pred HHHHHHH-HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHH-HHHHH
Confidence 9999874 55443322335666443221 110 0001122222344444444444 3446777875554 45555
Q ss_pred ccc-cCCCCCCCcEEEecC
Q 007445 181 VLG-IQRGTEPGVMIYLLP 198 (603)
Q Consensus 181 vla-~q~~~~~g~~~Y~~P 198 (603)
++. +.+. +.|.++|...
T Consensus 245 ~~~~G~d~-~~gG~~~~~d 262 (346)
T PF07221_consen 245 ALEHGWDR-EGGGLFYSVD 262 (346)
T ss_dssp HHHHHBST-TTSSB-SEEE
T ss_pred HHHheEec-CCCeEEEEEe
Confidence 555 5554 6666666643
No 16
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=93.79 E-value=0.41 Score=50.09 Aligned_cols=133 Identities=16% Similarity=0.028 Sum_probs=75.6
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCc-cc-----ccccc--eehhHhHHHHHhCChhHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGF-HS-----NTHIP--IVIGSQMRYEVTGDQLHKTI 105 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~-ha-----nthip--~~~G~a~~Y~~Tgd~~y~~a 105 (603)
.|+.-+|..||+. +|++|++.|+...+.- ........+..... +. -.|-- ++...+..|+.|+|++|++.
T Consensus 86 aG~~~~ll~l~~~-~~~~~l~~a~~~~~~l-~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~ 163 (321)
T cd04791 86 AGIGLALLYFART-GDPALLEAAAKIAELL-AEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLEL 163 (321)
T ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHH-HHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHH
Confidence 4566899999999 9999999998764310 00000010000000 00 00111 12235667999999999999
Q ss_pred HHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchh-HHHHHHHHHHHhhcCCCchHHHHHHHHh
Q 007445 106 SMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKVSRHLFRWTKEIAYADYYERSLT 178 (603)
Q Consensus 106 a~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas-~nmlkl~~~Lf~~tgD~~YaD~~ERaly 178 (603)
++...+.+.++..-..+|. .|.... . ....-.|.. ..+.....+|.+.++|.+|.+.+|+++-
T Consensus 164 A~~~~~~~~~~~~~~~~g~----~~~~~~---~---~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~ 227 (321)
T cd04791 164 AEEALDKELARAVVDDGGL----LQVDEG---A---RLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAH 227 (321)
T ss_pred HHHHHHHHHHhhccCCCCc----eEcCCC---C---ccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999988764332222221 111100 0 011124443 4455555678899999999999998743
No 17
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=0.087 Score=58.55 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=76.3
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhccc--CCcchhhhhcCCCCCCcccccccceehhHhHHHHHhCChhHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDK--PCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD 111 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~--~~~~~~l~~~~D~l~g~hanthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd 111 (603)
|=+.++++.-|+.||+++.|+.+.+|-+ ...++++..+ ..+ .-.|--+-..++++|++|||++|++.++.|-+
T Consensus 134 ghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~q---~~g--~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 134 GHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEEDQ---VPG--YCGHPEIELALAELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred HHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCccccc---ccc--ccCCCchhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4456899999999999999999999853 2345544321 111 00122233457888999999999999999987
Q ss_pred HHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHH---HHHHHHhhcCCCchHHHHHHHHhcc
Q 007445 112 IVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLK---VSRHLFRWTKEIAYADYYERSLTNG 180 (603)
Q Consensus 112 ~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlk---l~~~Lf~~tgD~~YaD~~ERalyN~ 180 (603)
.-.. .-++-||- |- |.=-++-.|. =.-.|++.+||..+.-.+|+..=|-
T Consensus 209 ~rg~-~P~~~rg~---e~----------------~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~ 260 (589)
T COG3533 209 QRGV-EPLAQRGD---EL----------------EGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNV 260 (589)
T ss_pred Hhcc-ChhhcCch---hh----------------hhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6321 11222222 10 1111111222 2457899999999988888866553
No 18
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=80.34 E-value=1.6 Score=46.61 Aligned_cols=131 Identities=14% Similarity=0.055 Sum_probs=71.2
Q ss_pred hhHHHHHHHhHcCCHHHHHHHhhcc---cCCcchhhhh------cCC-CCC-CcccccccceehhHhHHHHHhCChhHHH
Q 007445 36 MNDVLYKLFCITQDPKHLMLAHLFD---KPCFLGLLAL------QAD-DIS-GFHSNTHIPIVIGSQMRYEVTGDQLHKT 104 (603)
Q Consensus 36 mne~L~~LY~iTGd~~yL~lA~~F~---~~~~~~~l~~------~~D-~l~-g~hanthip~~~G~a~~Y~~Tgd~~y~~ 104 (603)
|.-++..+|+ +|++.||++|+.-. ...+.++... ..+ .+. ..+..++.=++.|.+. |++||++++++
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~ 103 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDPEALE 103 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-TTHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCChhHHH
Confidence 4467899999 89999999998732 2222221100 000 000 0111222223467777 89999999999
Q ss_pred HHHHHHHHHhhcceeee-cCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 007445 105 ISMFFMDIVNSSHTYAT-GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 177 (603)
Q Consensus 105 aa~~fwd~v~~~h~y~t-GG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (603)
.++...+.+.++-.-.- ||.. |.+..+.... .. .-.-.-++.-.-.|++.++|++|.+.+++.+
T Consensus 104 ~A~~~~~~l~~~~~d~~~g~~~--~~~~~~~~~~-----r~--~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~ 168 (346)
T PF07221_consen 104 LAEQTLEFLERRFWDPEGGGYR--ESFDPDWSPP-----RG--QNPHMHLLEAFLALYEATGDPRYLDRAEELL 168 (346)
T ss_dssp HHHHHHHHHHHHTEETTTTEE----EETTTSSCB-----EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcce--eccCCccccC-----CC--CChhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999865333332 3322 2222111100 00 0111122233346888999999999998764
No 19
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=78.06 E-value=36 Score=34.60 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=49.3
Q ss_pred cccceEEEEEecCCCCCccccccCCCCceee--ecCCCCCCceEEeecCceeEEEecCCCCCCCceEEEeeccCCCCCeE
Q 007445 439 AALHATFRLILNDSSGSEFSSLNDFIGKSVM--LEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTV 516 (603)
Q Consensus 439 ~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~--l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~v 516 (603)
.-=-..||.......++.. --+.+|+.+| +.|-..++-.+--...+-.+-+.---.+.+|..|.+.--- .+..|
T Consensus 156 EKDKVLlryYeSq~pS~es--gdgvDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~v 231 (268)
T PF15095_consen 156 EKDKVLLRYYESQCPSSES--GDGVDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECV 231 (268)
T ss_dssp ----EEEEEEE----TTTS------S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-E
T ss_pred ccceEEEEeccCCCCcccC--CCCccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCcee
Confidence 3445678866554333222 2235788777 9999999988877777767766655567888888887433 36899
Q ss_pred EEeecCCcceEEEEe
Q 007445 517 SLESETYKGCFVYTA 531 (603)
Q Consensus 517 sles~~~pg~~l~~~ 531 (603)
|||-.|+||.|+-+-
T Consensus 232 sfeck~~pg~~igvk 246 (268)
T PF15095_consen 232 SFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEESSSTTEEEEES
T ss_pred EEEecCCCceEEeee
Confidence 999999999999864
No 20
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=76.97 E-value=5.7 Score=44.47 Aligned_cols=143 Identities=18% Similarity=0.110 Sum_probs=80.7
Q ss_pred hcccchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhh--hhcCCCCCCcccc--cccc----eehh---------HhHH
Q 007445 31 EEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLL--ALQADDISGFHSN--THIP----IVIG---------SQMR 93 (603)
Q Consensus 31 ~E~GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l--~~~~D~l~g~han--thip----~~~G---------~a~~ 93 (603)
.|.|.+..=+.+|.++|||++|.+.|++..+. ++.. ....+.|-+.+.+ +-.+ +-+| ..+.
T Consensus 144 a~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~--l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~ 221 (452)
T PF01532_consen 144 AEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA--LWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKM 221 (452)
T ss_dssp HHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH--HHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHH
T ss_pred cccccceechhHHHHHhhccHHHHHHHHHHHH--HHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhh
Confidence 56788888899999999999999999987431 1100 0001111111111 1111 1122 5566
Q ss_pred HHHhC--ChhHHHHHHHHHHHHhhcceeeecCCCCCC--CCCCCcc--ccc-CCCCCccccchhHHHHHHHHHHHhhcCC
Q 007445 94 YEVTG--DQLHKTISMFFMDIVNSSHTYATGGTSVGE--FWSDPKR--LAS-NLDSNTEESCTTYNMLKVSRHLFRWTKE 166 (603)
Q Consensus 94 Y~~Tg--d~~y~~aa~~fwd~v~~~h~y~tGG~g~~E--~f~~p~~--l~~-~l~~~~~ETCas~nmlkl~~~Lf~~tgD 166 (603)
|.++| |+.|++.-....+.+. +|+......-..+ .|-.... ... ..+....=+|-.-+|+.+..+++ ++
T Consensus 222 ~lL~g~~d~~~~~~~~~a~~~i~-~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~ 297 (452)
T PF01532_consen 222 YLLLGGTDEQYRDMYDEAVDAIK-KHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---ND 297 (452)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHH-HHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TC
T ss_pred hhhcCccchHHHHHHHHHHHHHH-HHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---Cc
Confidence 88999 9999988888888875 3544442222111 1111100 000 11345678999999999999998 33
Q ss_pred CchHHHHHHHHhc
Q 007445 167 IAYADYYERSLTN 179 (603)
Q Consensus 167 ~~YaD~~ERalyN 179 (603)
.++.+..++.+..
T Consensus 298 ~~~~~~A~~l~~~ 310 (452)
T PF01532_consen 298 EGDLELAEELTET 310 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5566655554433
No 21
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=75.74 E-value=12 Score=44.81 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=73.8
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccc-eehhHhHHHHHhCChhHHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP-IVIGSQMRYEVTGDQLHKTISMFFMDI 112 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip-~~~G~a~~Y~~Tgd~~y~~aa~~fwd~ 112 (603)
+|+.-+|..||+.|++++|++.|+...+. +..... .+...+ .-.-.. ++.....+|+.++++.++++++..-+.
T Consensus 544 aGi~~~L~~l~~~~~~~~~~~~a~~~~~~--l~~~~~-~~~~~D--~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~ 618 (825)
T cd04792 544 GGILYALTHLGKLLKDDRLLNLAKEILDL--IDELIE-KDEKLD--FISGAAGLILVLLSLYELFLSERFLDLALKCGDH 618 (825)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHhhc-cccCCC--EeeecHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 56668899999999999999999876432 000000 010000 000001 223355678999999999988887777
Q ss_pred HhhcceeeecCCCCCCCCCCCcccccCCCCCccccc-hhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 007445 113 VNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESC-TTYNMLKVSRHLFRWTKEIAYADYYERSL 177 (603)
Q Consensus 113 v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETC-as~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (603)
+.......-++....+ . ....--| .+.+.+....+|++.++|.+|.+.+++++
T Consensus 619 l~~~~~~~~~~~~~~~---------~---~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l 672 (825)
T cd04792 619 LLENASNEDGGIGPAE---------Q---PNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKAL 672 (825)
T ss_pred HHHhhhhccCCccccc---------c---cccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 6543222212211000 0 0111112 23456667777888899999999988776
No 22
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.66 E-value=8 Score=45.11 Aligned_cols=78 Identities=15% Similarity=-0.081 Sum_probs=46.0
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccC---Ccchhhhhc--------CCCCC--Cccccccccee-----hhHhHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKP---CFLGLLALQ--------ADDIS--GFHSNTHIPIV-----IGSQMRYE 95 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~---~~~~~l~~~--------~D~l~--g~hanthip~~-----~G~a~~Y~ 95 (603)
.-+..+|..||++|+|.+||+.|+.+.+. .|+++. .+ .+-+. ..-.-.-+|-. ....++-+
T Consensus 471 A~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ 549 (667)
T COG1331 471 AFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSL 549 (667)
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 33458999999999999999999998543 222222 11 00000 00011122221 23455679
Q ss_pred HhCChhHHHHHHHHHHH
Q 007445 96 VTGDQLHKTISMFFMDI 112 (603)
Q Consensus 96 ~Tgd~~y~~aa~~fwd~ 112 (603)
+|||..|.++|......
T Consensus 550 ltg~~~y~e~A~~~L~a 566 (667)
T COG1331 550 LTGDARYLEAAEDILQA 566 (667)
T ss_pred hcCchhHHHHHHHHHHH
Confidence 99999999876654443
No 23
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=70.25 E-value=32 Score=39.41 Aligned_cols=80 Identities=21% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHhHcCCHHHHHHHhhccc---CCcchhhhhc------CCCC-CCcc-ccccccee-hh-----HhHHHHHhCCh
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFDK---PCFLGLLALQ------ADDI-SGFH-SNTHIPIV-IG-----SQMRYEVTGDQ 100 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~~---~~~~~~l~~~------~D~l-~g~h-anthip~~-~G-----~a~~Y~~Tgd~ 100 (603)
-.|.-.|.+|||+.||+.|+-+-+ +.|.-+-.-. .... ...+ +.....++ +| ...+.++|||+
T Consensus 162 GGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~ 241 (522)
T PTZ00470 162 GGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDP 241 (522)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCH
Confidence 446678999999999999987632 2221110000 0000 0000 01111111 34 34458999999
Q ss_pred hHHHHHHHHHHHHhhcc
Q 007445 101 LHKTISMFFMDIVNSSH 117 (603)
Q Consensus 101 ~y~~aa~~fwd~v~~~h 117 (603)
+|.++++..++.+.+.+
T Consensus 242 kY~~~a~~i~~~l~~~~ 258 (522)
T PTZ00470 242 KYAEYVDKVMDALFSMK 258 (522)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999988886543
No 24
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=65.66 E-value=21 Score=42.80 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=70.2
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccceehh-------HhHHHHHhCChhHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIG-------SQMRYEVTGDQLHKTIS 106 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip~~~G-------~a~~Y~~Tgd~~y~~aa 106 (603)
+|+.-.|..||++|+|++|.+.|+...+.- ...+..... + ...+-.+.| ...+|+.++++.|++.+
T Consensus 494 aGIal~l~~l~~~t~~~~~~~~a~~~l~~l-~~~~~~~~~-----~-~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a 566 (825)
T cd04792 494 AGIALFLAYLGQLTGDERYTRLARKILDSL-VKSLSELKT-----D-DTGIGAFSGLGGILYALTHLGKLLKDDRLLNLA 566 (825)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHH-HHHHhcccc-----c-ccCceeEechhHHHHHHHHHHHHcCCHHHHHHH
Confidence 678899999999999999999998764321 111110000 0 011112333 44568899999999988
Q ss_pred HHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 007445 107 MFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTN 179 (603)
Q Consensus 107 ~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN 179 (603)
+...+.+... .- ..+. .++ . ...-+.+...-++++.+++.+|.+.+++.+=.
T Consensus 567 ~~~~~~l~~~-~~------~~~~----~D~--------~--~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~ 618 (825)
T cd04792 567 KEILDLIDEL-IE------KDEK----LDF--------I--SGAAGLILVLLSLYELFLSERFLDLALKCGDH 618 (825)
T ss_pred HHHHHHHHHh-hc------cccC----CCE--------e--eecHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 8877766431 10 0000 001 1 11223344455788889999999988776554
No 25
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=63.89 E-value=12 Score=39.80 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=50.5
Q ss_pred eehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcC
Q 007445 86 IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTK 165 (603)
Q Consensus 86 ~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tg 165 (603)
...|....|+.|||++|++.++.+.+.......- +. ...+|....++ -.+++.|+
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~--------~~--------------~~d~~~~g~~~---~~~y~~t~ 84 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGS--------DY--------------NLDDHDIGFLL---LDLYERTG 84 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT--------TT--------------SCCGTTHHHHH---HHHHHHH-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC--------cc--------------CCchhhhHHHH---HHHHHHhC
Confidence 4578888999999999999999988876542211 11 11122222222 33999999
Q ss_pred CCchHHHHHHHHhccccccCCCCCCCcEEE
Q 007445 166 EIAYADYYERSLTNGVLGIQRGTEPGVMIY 195 (603)
Q Consensus 166 D~~YaD~~ERalyN~vla~q~~~~~g~~~Y 195 (603)
|.+|.+.+++++= .++..+.....|.|.+
T Consensus 85 d~~y~~~~~~~a~-~~l~~~~~~~~G~~~~ 113 (336)
T PF07470_consen 85 DEKYKDAAIQAAD-WLLARRPRTSDGGFWH 113 (336)
T ss_dssp THHHHHHHHHHHH-HHHHTSCBECTGCBEC
T ss_pred CHHHHHHHHHHHH-HHHHhCCCCCCCcccc
Confidence 9999999987764 4555433213345554
No 26
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=62.34 E-value=22 Score=40.72 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=54.8
Q ss_pred cccceehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchh-HHHHHH-HHH
Q 007445 82 THIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKV-SRH 159 (603)
Q Consensus 82 thip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas-~nmlkl-~~~ 159 (603)
+.|.++=|..-.|.+|||+.|++.|...=|.+..---..||---..-.+... ....-......+|.+ .+.|.+ -.+
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--~~~~~~~~~~~~~lAe~gSl~LEF~~ 233 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--RKSYPGWAGGCSILSEVGTLQLEFNY 233 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--CCCCcccCCCccchhhhhhHHHHHHH
Confidence 4455556788999999999999988888888753222234432111111100 000000012223322 333333 457
Q ss_pred HHhhcCCCchHHHHHHHH
Q 007445 160 LFRWTKEIAYADYYERSL 177 (603)
Q Consensus 160 Lf~~tgD~~YaD~~ERal 177 (603)
|-++|||++|.|..+|+.
T Consensus 234 LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 234 LSEITGDPKYAEYVDKVM 251 (522)
T ss_pred HHHhhCCHHHHHHHHHHH
Confidence 899999999999999885
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=61.70 E-value=8.2 Score=40.83 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHhhcCCCchHHHHHHHHhccccccCCCCCCCcEEEecCCCC
Q 007445 148 CTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 201 (603)
Q Consensus 148 Cas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~g~~~Y~~Pl~~ 201 (603)
=+|+.-|++.-++++.++|++|-|.++|++ |-+|++|.+ ++|.-+|+ |+..
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQf~-p~~~ 94 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQFY-PLKG 94 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCccc-CCcC
Confidence 456777888889999999999999999987 679999997 66655544 6654
No 28
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=58.99 E-value=10 Score=40.90 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=52.4
Q ss_pred ccccceehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHH
Q 007445 81 NTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHL 160 (603)
Q Consensus 81 nthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~L 160 (603)
..+-...-|.+++|+.|+|++|++....|.+..... || -+|+.+ +.+.+....--|
T Consensus 36 we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~-----~g-------~~~~~i------------d~i~~g~~L~~L 91 (357)
T COG4225 36 WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDE-----GG-------LPPRNI------------DHIAAGLTLLPL 91 (357)
T ss_pred ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhcc-----CC-------CCccch------------hhhccCceeeeh
Confidence 346667799999999999999999999998875432 22 111111 234445566779
Q ss_pred HhhcCCCchHHHHHHH
Q 007445 161 FRWTKEIAYADYYERS 176 (603)
Q Consensus 161 f~~tgD~~YaD~~ERa 176 (603)
++.|+|++|....++.
T Consensus 92 ~e~T~~~~Yl~~a~~~ 107 (357)
T COG4225 92 YEQTGDPRYLEAAIKL 107 (357)
T ss_pred hhhhCCHHHHHHHHHH
Confidence 9999999999988864
No 29
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=58.93 E-value=71 Score=33.05 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=75.1
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccC---------CcchhhhhcCCCCCCcccccccc--eehhHhHHHHHhCChhH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKP---------CFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLH 102 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~---------~~~~~l~~~~D~l~g~hanthip--~~~G~a~~Y~~Tgd~~y 102 (603)
.|+.-+|.++|+.|.++.+.++++....- ..+++. ...+.......--|-. ++......|+.++|+.+
T Consensus 162 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~ 240 (343)
T cd04434 162 AGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPS-RSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKY 240 (343)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCC-CCCCCccccceecCCChhHHHHHHHHHHHcCcHHH
Confidence 57779999999999888888887665321 111100 0000000000111222 22334566899999999
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 007445 103 KTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVL 182 (603)
Q Consensus 103 ~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~vl 182 (603)
++.++...+.+.++... . ....+=.|...+.+.+..+|.+.+++.+|.+..++.. +.++
T Consensus 241 ~~~~~~~~~~~~~~~~~-~-------------------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~ 299 (343)
T cd04434 241 DEAAEKALELAWKRGLL-E-------------------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLI 299 (343)
T ss_pred HHHHHHHHHHHHHhhhc-c-------------------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHH
Confidence 98877766665432210 0 0123334556777888899999999999888776554 4444
Q ss_pred c
Q 007445 183 G 183 (603)
Q Consensus 183 a 183 (603)
.
T Consensus 300 ~ 300 (343)
T cd04434 300 S 300 (343)
T ss_pred H
Confidence 3
No 30
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=56.73 E-value=69 Score=34.14 Aligned_cols=125 Identities=11% Similarity=-0.089 Sum_probs=70.1
Q ss_pred chhHHHHHHHhHcCCHHHHHHHhhcccC-------CcchhhhhcCCCCCCcccccccc--eehhHhHHHHHhCChhHHHH
Q 007445 35 GMNDVLYKLFCITQDPKHLMLAHLFDKP-------CFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTI 105 (603)
Q Consensus 35 Gmne~L~~LY~iTGd~~yL~lA~~F~~~-------~~~~~l~~~~D~l~g~hanthip--~~~G~a~~Y~~Tgd~~y~~a 105 (603)
|+.-+|.+++..++++++++.++...+. .-.|+...+.+.-....+-=|-. ++......|++++|+.+++.
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~ 248 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEA 248 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 6678899999999999999988865321 01111111100000000011222 22234566899999999988
Q ss_pred HHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 007445 106 SMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNG 180 (603)
Q Consensus 106 a~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~ 180 (603)
++..-+.+.++.... ...+=.|...+.+...-+|++.++|.+|.+...+.+=..
T Consensus 249 ~~~~~~~~~~~g~~~---------------------~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~ 302 (343)
T cd04794 249 AIKCGELIWKRGLLK---------------------KGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFL 302 (343)
T ss_pred HHHHHHHHHHhCCcc---------------------CCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 777666554321100 001222233444566678889999999988876554433
No 31
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=55.74 E-value=42 Score=37.60 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=68.0
Q ss_pred HHHHHHHhHc--CCHHHHHHHhhccc---CCcchhhhhcCCCCCCccccc------ccc-----ee-hh-----HhHHHH
Q 007445 38 DVLYKLFCIT--QDPKHLMLAHLFDK---PCFLGLLALQADDISGFHSNT------HIP-----IV-IG-----SQMRYE 95 (603)
Q Consensus 38 e~L~~LY~iT--Gd~~yL~lA~~F~~---~~~~~~l~~~~D~l~g~hant------hip-----~~-~G-----~a~~Y~ 95 (603)
-.|.-.|++| +|+.+|+.|+.+-+ +.|..+ ..++..+.|- +.+ ++ +| ..++.+
T Consensus 84 GgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~-----~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~ 158 (452)
T PF01532_consen 84 GGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTP-----TGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQ 158 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSS-----SS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCC-----CccccceeeecccCCCCCCCCcccccccccceechhHHHH
Confidence 4466789999 99999999988743 233211 1111111111 111 11 23 556789
Q ss_pred HhCChhHHHHHHHHHHHHhh--cceeeecCCCC-----CCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcC--C
Q 007445 96 VTGDQLHKTISMFFMDIVNS--SHTYATGGTSV-----GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTK--E 166 (603)
Q Consensus 96 ~Tgd~~y~~aa~~fwd~v~~--~h~y~tGG~g~-----~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tg--D 166 (603)
+|||++|.++++..++.+.+ .+.-..|-.+. ...|... . .+-+...=.-|+.|- .++.+++ |
T Consensus 159 lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~-~-----~~~Ga~~DS~YEYLl---K~~lL~g~~d 229 (452)
T PF01532_consen 159 LTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSS-S-----ISLGAGGDSFYEYLL---KMYLLLGGTD 229 (452)
T ss_dssp HHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSST-E-----E-SSTTTHHHHHHHH---HHHHHTTTTT
T ss_pred HhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCccccc-c-----cccCCCcchHHHhhh---hhhhhcCccc
Confidence 99999999999999999987 34445555543 1111110 0 011222222344431 2223444 8
Q ss_pred CchHHHHHHHH
Q 007445 167 IAYADYYERSL 177 (603)
Q Consensus 167 ~~YaD~~ERal 177 (603)
..|.+.++.++
T Consensus 230 ~~~~~~~~~a~ 240 (452)
T PF01532_consen 230 EQYRDMYDEAV 240 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 89999998875
No 32
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=55.73 E-value=27 Score=37.24 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=51.3
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccc--eehhHhHHHHHhCChhHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMD 111 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip--~~~G~a~~Y~~Tgd~~y~~aa~~fwd 111 (603)
-|+..++.++|++++|+++++.|+.-.+.. + . ...+..-+..=|-- +..+....|+.|+|+.|++.|..+.+
T Consensus 227 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~---~-~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 227 PGIVYLLAKAYLVFKEEQYLEAAIKCGELI--W---K-RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHH--H---H-hCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 466799999999999999999988754311 1 0 00110000111221 23446778999999999999999999
Q ss_pred HHhhc
Q 007445 112 IVNSS 116 (603)
Q Consensus 112 ~v~~~ 116 (603)
.+.++
T Consensus 301 ~~~~~ 305 (343)
T cd04794 301 FLINY 305 (343)
T ss_pred HHhcc
Confidence 88754
No 33
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=55.27 E-value=32 Score=36.48 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=57.0
Q ss_pred HhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCC--
Q 007445 90 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI-- 167 (603)
Q Consensus 90 ~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~-- 167 (603)
+++.|..|+|++|++++.+..+-+. .--|..||.-.. |-......+++ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL-~aQypnGGWPQ~--yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLL-KAQYPNGGWPQF--YPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHH-HHS-TTS--BSE--CS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHH-HhhCCCCCCCcc--CCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 7788999999999999999999998 467899988652 21111111211 111225678888888888888888
Q ss_pred -------chHHHHHHHHhccccccC
Q 007445 168 -------AYADYYERSLTNGVLGIQ 185 (603)
Q Consensus 168 -------~YaD~~ERalyN~vla~q 185 (603)
++.+.++|.+- .||..|
T Consensus 122 v~~~~~~r~~~A~~kgi~-ciL~tQ 145 (289)
T PF09492_consen 122 VDESLRARARAAVDKGID-CILKTQ 145 (289)
T ss_dssp S-HHHHHHHHHHHHHHHH-HHHHHS
T ss_pred cCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 77777887753 445543
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=50.74 E-value=61 Score=34.41 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=57.3
Q ss_pred HhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCC---
Q 007445 90 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKE--- 166 (603)
Q Consensus 90 ~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD--- 166 (603)
.++.|+.|+|+.|++++....+.+. .=.|..||...-+-... ...++++-+- =+.++.|.+.+.+....++
T Consensus 53 La~~y~~t~d~~y~~A~~rgld~LL-~aQypnGGWPQf~p~~~--~Y~~~ITfND---~am~~vl~lL~~i~~~~~~~~~ 126 (290)
T TIGR02474 53 LAQVYQQEKNAKYRDAARKGIEYLL-KAQYPNGGWPQFYPLKG--GYSDAITYND---NAMVNVLTLLDDIANGKDPFDV 126 (290)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH-hhhCCCCCcCcccCCcC--CcccccccCc---HHHHHHHHHHHHHHhccCCccc
Confidence 6788999999999999999999998 47789999987544322 2223222110 1223666666666543332
Q ss_pred ------CchHHHHHHHHhccccccCC
Q 007445 167 ------IAYADYYERSLTNGVLGIQR 186 (603)
Q Consensus 167 ------~~YaD~~ERalyN~vla~q~ 186 (603)
.++...++|++= -||..|-
T Consensus 127 ~~~~~~~r~~~Ai~Rgid-~ILktQ~ 151 (290)
T TIGR02474 127 FPDSTRTRAKTAVTKGIE-CILKTQV 151 (290)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 456666666653 4456554
No 35
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=49.93 E-value=26 Score=37.92 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=49.9
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccc--eehhHhHHHHHhCChhHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMD 111 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip--~~~G~a~~Y~~Tgd~~y~~aa~~fwd 111 (603)
-|+-.++..+++.++|+++++.|....+.......... .. ..+..=|-- +.......|+.|+|+.++++++++.+
T Consensus 247 ~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 247 PGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLS--KL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhc--cC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 46668999999999999999998877432111000000 00 011111222 12335667999999999999999888
Q ss_pred HHhh
Q 007445 112 IVNS 115 (603)
Q Consensus 112 ~v~~ 115 (603)
.+..
T Consensus 324 ~~l~ 327 (382)
T cd04793 324 QIIS 327 (382)
T ss_pred HHHH
Confidence 7764
No 36
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=49.89 E-value=21 Score=40.28 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccc--cc--cc-eehhHhHHHHHhCChhHHHHHHHHHHH
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSN--TH--IP-IVIGSQMRYEVTGDQLHKTISMFFMDI 112 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~han--th--ip-~~~G~a~~Y~~Tgd~~y~~aa~~fwd~ 112 (603)
.++++-|++++|+...++|..+-+.--++.+.. +......-| ++ -| .+.++..+|++|++++|++.|+..=++
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~--~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~ 468 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFGLGDIGN--AAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGEN 468 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TT--BTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCcccccC--ccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 789999999999999999998865433333321 111111111 22 22 346788899999999999998888888
Q ss_pred HhhcceeeecCC
Q 007445 113 VNSSHTYATGGT 124 (603)
Q Consensus 113 v~~~h~y~tGG~ 124 (603)
+.++ .|.-|=+
T Consensus 469 l~~~-~~~~GlF 479 (557)
T PF06917_consen 469 LFEQ-HFHRGLF 479 (557)
T ss_dssp HHHH-HEETTEE
T ss_pred HHHH-HccCcee
Confidence 8754 4444443
No 37
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=45.20 E-value=15 Score=35.59 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=25.1
Q ss_pred eEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 007445 502 VFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLG 543 (603)
Q Consensus 502 ~f~~vpgl~g~~g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 543 (603)
.|..--.=.| .+.+|||+.+||||+-.... .....|.|.
T Consensus 105 RFlFyr~~sG--~tstFESaafPgWfIsTs~~-e~~~PV~Lt 143 (165)
T PHA02651 105 RFAFIRSDNG--HTSTFESVAFPGWFLCTSSG-DGIEPVGLT 143 (165)
T ss_pred eEEEEEccCC--CceEEEecCCCCcEEEeccc-cCCcceEee
Confidence 3443333345 49999999999999986410 112467776
No 38
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=43.47 E-value=40 Score=34.90 Aligned_cols=76 Identities=14% Similarity=-0.026 Sum_probs=48.2
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCcccccccc--eehhHhHHHHHhCChhHHHHHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMD 111 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hanthip--~~~G~a~~Y~~Tgd~~y~~aa~~fwd 111 (603)
-|+..++.++|+.|+|+++++.++...+...-... . + ...+..=|-. +.......|+.++|+.+++.+..+..
T Consensus 222 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~ 296 (343)
T cd04434 222 PGILLALLLAYKALGDDKYDEAAEKALELAWKRGL--L-E--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALAL 296 (343)
T ss_pred hhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh--c-c--CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57779999999999999999998876431110000 0 0 0011112233 22336667999999999998877766
Q ss_pred HHh
Q 007445 112 IVN 114 (603)
Q Consensus 112 ~v~ 114 (603)
.+.
T Consensus 297 ~~~ 299 (343)
T cd04434 297 LLI 299 (343)
T ss_pred HHH
Confidence 554
No 39
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=43.22 E-value=92 Score=35.86 Aligned_cols=138 Identities=20% Similarity=0.145 Sum_probs=71.5
Q ss_pred cchhHHHHHHHhHcCCH-HHHHHHhhccc---CCcchhhhh---c---CCCCCC--ccccc--ccce--------ehhHh
Q 007445 34 GGMNDVLYKLFCITQDP-KHLMLAHLFDK---PCFLGLLAL---Q---ADDISG--FHSNT--HIPI--------VIGSQ 91 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~-~yL~lA~~F~~---~~~~~~l~~---~---~D~l~g--~hant--hip~--------~~G~a 91 (603)
|=|.-.|++++.+++.. +|++.|.-..+ ...++.... . .+.-.| .|.|. .+|- +.|..
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLL 587 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLL 587 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHH
Confidence 55668999999999866 99988876421 112222110 0 011111 35554 2221 37899
Q ss_pred HHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCC-CCCccccchh----HHHHHHHHHHHhhcCC
Q 007445 92 MRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNL-DSNTEESCTT----YNMLKVSRHLFRWTKE 166 (603)
Q Consensus 92 ~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l-~~~~~ETCas----~nmlkl~~~Lf~~tgD 166 (603)
++|+.+|+..|++-|...=++- ++...-.||.=-.|.= +++-..... +..++|-|+. +|+++| ..+.+.
T Consensus 588 DlYea~~~~e~LkwA~~LQdtq-dklFWdgggYF~Se~~-~~~v~vRlkeDhDGAEPs~nSVsahNLvrL----~~~~~~ 661 (786)
T KOG2244|consen 588 DLYEAGGGIEWLKWAIKLQDTQ-DKLFWDGGGYFISEKT-DEDVSVRLKEDHDGAEPSGNSVSAHNLVRL----ASIVAA 661 (786)
T ss_pred HHHHccCchHHHHHHHHHHHHH-HHheecCCceeeeecc-CCCcceeeccccCCCCCCccchhhhhHHHH----HHHhhH
Confidence 9999999998876444432221 1111122332112221 111111111 3557888764 666644 445566
Q ss_pred CchHHHHHHHH
Q 007445 167 IAYADYYERSL 177 (603)
Q Consensus 167 ~~YaD~~ERal 177 (603)
..|++-.-|.|
T Consensus 662 e~yl~ka~~ll 672 (786)
T KOG2244|consen 662 ESYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHHH
Confidence 67777665543
No 40
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=42.72 E-value=28 Score=41.87 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=42.8
Q ss_pred hhHHHHHHHhHcCCHHHHHHHhhcccCCcchhhhhcCCCCC-Ccccccccc--eehhHhHHHHHhCChhHHHHHHH
Q 007445 36 MNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMF 108 (603)
Q Consensus 36 mne~L~~LY~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~-g~hanthip--~~~G~a~~Y~~Tgd~~y~~aa~~ 108 (603)
..-+|+.+|+.|.++|.|++|.-.-+...-. ....|... -.....|.. ++...+.+|++|||+.+++..+.
T Consensus 747 ~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e 820 (963)
T COG4403 747 VICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKE 820 (963)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3478999999999999999998764321111 12222211 011122333 22336678999999988765443
No 41
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=41.50 E-value=58 Score=35.98 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=20.6
Q ss_pred HHHHHHHhHcCCHHHHHHHhhccc
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFDK 61 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~~ 61 (603)
-+-++||+.|||++||+.|+.+..
T Consensus 222 wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 222 WAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCcHHHHHHHHHhHH
Confidence 477899999999999999998864
No 42
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=41.17 E-value=41 Score=36.23 Aligned_cols=73 Identities=21% Similarity=0.063 Sum_probs=50.4
Q ss_pred cchhHHHHHHHhHcCCHHHHHHHhhc----ccCCcchhhhhcCCCCCCcccccccce--ehhHhHHHHHhCChhHHHHHH
Q 007445 34 GGMNDVLYKLFCITQDPKHLMLAHLF----DKPCFLGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISM 107 (603)
Q Consensus 34 GGmne~L~~LY~iTGd~~yL~lA~~F----~~~~~~~~l~~~~D~l~g~hanthip~--~~G~a~~Y~~Tgd~~y~~aa~ 107 (603)
-|+.-.|++-|++=++++||+-|..- .+..++.. + .| --|-.- .--...+|++|+|.+|+--|.
T Consensus 283 pGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkk---g----~G---ichGvaGNaYvFLsLyRLT~d~kYlyRA~ 352 (403)
T KOG2787|consen 283 PGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKK---G----VG---ICHGVAGNAYVFLSLYRLTGDMKYLYRAK 352 (403)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhc---C----Cc---ccccccCchhhhHhHHHHcCcHHHHHHHH
Confidence 47889999999999999999987654 23332211 0 01 011111 111667899999999999999
Q ss_pred HHHHHHhhc
Q 007445 108 FFMDIVNSS 116 (603)
Q Consensus 108 ~fwd~v~~~ 116 (603)
.|.....++
T Consensus 353 kFae~lld~ 361 (403)
T KOG2787|consen 353 KFAEWLLDY 361 (403)
T ss_pred HHHHHHHhh
Confidence 999998763
No 43
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=40.77 E-value=2.2e+02 Score=30.75 Aligned_cols=129 Identities=11% Similarity=-0.106 Sum_probs=73.1
Q ss_pred chhHHHHHHHhHc-CCHHHHHHHhhc---------ccCC-cchhhhh----cCCCCC-----Ccccccccceehh--HhH
Q 007445 35 GMNDVLYKLFCIT-QDPKHLMLAHLF---------DKPC-FLGLLAL----QADDIS-----GFHSNTHIPIVIG--SQM 92 (603)
Q Consensus 35 Gmne~L~~LY~iT-Gd~~yL~lA~~F---------~~~~-~~~~l~~----~~D~l~-----g~hanthip~~~G--~a~ 92 (603)
|+.-+|..+|+.+ +++++++.++.. .+.. .+++... ..+... ..++--|-..-++ ...
T Consensus 176 Gi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~ 255 (382)
T cd04793 176 GPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQL 255 (382)
T ss_pred HHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHH
Confidence 5668899999999 899999986653 1111 1111110 000000 0011112221122 334
Q ss_pred HHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHH
Q 007445 93 RYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 172 (603)
Q Consensus 93 ~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~ 172 (603)
.++.++|+.+++.+....+.+.....- .+ . . ...+=.|...+.+.+..+|++.++|.+|.+.
T Consensus 256 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~------~------~-----~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~ 317 (382)
T cd04793 256 AGKALDDQKLQEAAEKILKAALKDKKQ-LS------K------L-----ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSA 317 (382)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhChhh-hc------c------C-----CCCCcCccHHHHHHHHHHHHHHhCCcHHHHH
Confidence 578999999998877776655421100 00 0 0 1122334557778888999999999999998
Q ss_pred HHHHHhccc
Q 007445 173 YERSLTNGV 181 (603)
Q Consensus 173 ~ERalyN~v 181 (603)
+++.+=.-+
T Consensus 318 a~~~~~~~l 326 (382)
T cd04793 318 LEYLLNQII 326 (382)
T ss_pred HHHHHHHHH
Confidence 887665444
No 44
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=38.80 E-value=1.6e+02 Score=32.47 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=81.1
Q ss_pred ccccccceehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCC-CCCCCCCCcccccCCCCCccccchhHHHHHHH
Q 007445 79 HSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTS-VGEFWSDPKRLASNLDSNTEESCTTYNMLKVS 157 (603)
Q Consensus 79 hanthip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g-~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~ 157 (603)
-.|.|.-+++.+...|++||++.|++.+...-+.+.. | ++-+..| ..|+|..+-.-.........|-==-.++++|.
T Consensus 172 ~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~-r-f~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Ll 249 (388)
T COG2942 172 GSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIIS-R-FADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLL 249 (388)
T ss_pred CCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-H-hhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHH
Confidence 5677777888899999999999999877777676652 3 3334444 37887553311111123456666678999999
Q ss_pred HHHHhhcCCCchHHHHHHHHhccccccCCCCCCCcEEEec
Q 007445 158 RHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLL 197 (603)
Q Consensus 158 ~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~g~~~Y~~ 197 (603)
.++-+..++..-.+..=|..-|++--+.++ +.|.++|-.
T Consensus 250 l~~a~~~~~~~l~~~A~~lf~~a~~~g~d~-~~gg~~~sl 288 (388)
T COG2942 250 LDIARRRGRAWLIEAARRLFDIAVADGWDP-ERGGAYYSL 288 (388)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHhccCc-ccCeEEEEe
Confidence 999999999777777777777777667775 677777553
No 45
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=38.31 E-value=1.8e+02 Score=24.75 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.4
Q ss_pred eEEEEeccCCccCCCcEEEECCeecCC
Q 007445 296 TSLNLRIPTWTSSNGAKATLNGQDLPL 322 (603)
Q Consensus 296 ftL~LRIP~Wa~~~~~~v~VNG~~~~~ 322 (603)
-+|.|.+| . +++|+|||++...
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~~ 24 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETNG 24 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEccc
Confidence 36888899 2 6899999998653
No 46
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=38.28 E-value=81 Score=37.85 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCC-CCCCEEEEEeecCCCCEEEEEe
Q 007445 282 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLP-SPGNFLSVTKTWSSDDKLTIQL 345 (603)
Q Consensus 282 ~V~l~v~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~-~~ggy~~I~R~W~~GD~I~L~L 345 (603)
+++.+|+.. ...-.|.+-||-- + |++++||||+++.. ..++|+-|.-. +...+|+++.
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 577777762 2334788889954 3 79999999999875 46889999876 3346677665
No 47
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=37.47 E-value=67 Score=28.83 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=33.0
Q ss_pred EEEeccCCccC--------------CCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEec
Q 007445 298 LNLRIPTWTSS--------------NGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAI 354 (603)
Q Consensus 298 L~LRIP~Wa~~--------------~~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~I~L~Lpm~lr~~~~ 354 (603)
...||=.|... ++=+|.|||+.+.... .=+.||+|+|.|.-......+
T Consensus 7 ~~mRLDKwL~~aR~~KrRslAk~~~~~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 7 DRMRLDKWLWAARFIKRRSLAKEMIEGGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred cceehHHHHHHHHHhhhHHHHHHHHHCCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEE
Confidence 45677777531 2458999999885422 226899999999877666543
No 48
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=33.29 E-value=63 Score=28.50 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=31.2
Q ss_pred EEEECCeecCCCCCCCEEEEEeecCCCCEEEEEec-ceeEEE--ecCCCcccccCeEEEeecceeee
Q 007445 312 KATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP-LTLRTE--AIQDDRPEYASIQAILYGPYVLA 375 (603)
Q Consensus 312 ~v~VNG~~~~~~~~ggy~~I~R~W~~GD~I~L~Lp-m~lr~~--~~~d~~~~~~~~vAv~rGPlVlA 375 (603)
.++|||+... ..++..+.++ +||.|+|+-. -..|+. .-.+-.+ --+.|||+|+-
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E-----pi~~~GpFVmn 86 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE-----PIVQYGPFVMN 86 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S-------EEETTEEES
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC-----CEEEECCcccC
Confidence 3566666411 1246677776 7899999998 666652 2222211 25689999985
No 49
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=32.63 E-value=27 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=21.0
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 007445 514 RTVSLESETYKGCFVYTAVNLQSSESTKLG 543 (603)
Q Consensus 514 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 543 (603)
.+.+|||+.+||||+-.. ......|.|.
T Consensus 103 ~~~~FeSaa~PgWfIsTs--~~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATK--QEEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEec--ccCCeEEEee
Confidence 389999999999999864 1234566665
No 50
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=32.20 E-value=36 Score=31.26 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEEe
Q 007445 515 TVSLESETYKGCFVYTAVNLQSSESTKLGC 544 (603)
Q Consensus 515 ~vsles~~~pg~~l~~~~~~~~g~~~~l~~ 544 (603)
+-+|||+.+|||||... ...+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~--~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATS--PEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBE--SSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEec--ccCCceEEEEe
Confidence 44599999999999865 23455666764
No 51
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=29.80 E-value=32 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.6
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 007445 514 RTVSLESETYKGCFVYTAVNLQSSESTKLG 543 (603)
Q Consensus 514 g~vsles~~~pg~~l~~~~~~~~g~~~~l~ 543 (603)
.+.+|||+.+||||+-... .....|.|.
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4889999999999998641 234446665
No 52
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=29.62 E-value=1.5e+02 Score=29.72 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=35.7
Q ss_pred eeEEEEeccCCc----cCCCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEeccee
Q 007445 295 TTSLNLRIPTWT----SSNGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTL 349 (603)
Q Consensus 295 ~ftL~LRIP~Wa----~~~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~I~L~Lpm~l 349 (603)
...|.++.|.+. .. +-.|.|||....... .++.+.++ ..|+.||.|.|+.+|++
T Consensus 21 ~~~l~i~~~~~~~~~l~~-G~SIAvnGvCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLEral~~ 90 (200)
T TIGR00187 21 FISLVVNLADHMLDDLEL-GDSIAVNGVCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIERALKA 90 (200)
T ss_pred cEEEEEEeChHHhccccc-CCEEEECcEEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEcccCCC
Confidence 445666677332 22 578999998766532 45556666 37888999888877654
No 53
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=29.37 E-value=1.7e+02 Score=29.16 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=33.1
Q ss_pred eEEEEeccCCc---cCCCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEeccee
Q 007445 296 TSLNLRIPTWT---SSNGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTL 349 (603)
Q Consensus 296 ftL~LRIP~Wa---~~~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~I~L~Lpm~l 349 (603)
..|.++.|... .. +-.|.|||....... .++.+.++ ..|+.||.|.|+-+|++
T Consensus 22 ~~~~i~~~~~~~~l~~-g~SIAvnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLEra~~~ 89 (194)
T PRK09289 22 LRLTIEAGKLLSDLKL-GDSIAVNGVCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLERALRL 89 (194)
T ss_pred EEEEEEcCcccccccc-CCEEEEccEEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEeEcccC
Confidence 44555556443 22 678899998766432 34444443 25888998888877655
No 54
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=28.79 E-value=3.2e+02 Score=25.76 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=37.3
Q ss_pred Cccccccccc--eeeccCCCccCCceEEEecCCCceeeccccc--ccccceEEEEec
Q 007445 549 TEAGFNNAAS--FVIEKGLSEYHPISFVAKGANRNFLLAPLLS--LRDESYTVYFDF 601 (603)
Q Consensus 549 ~~~~f~~~as--F~~~~gl~~y~piSf~a~g~~~~~ll~pl~~--~~~~~~~~~~~~ 601 (603)
...+|+..-+ +....-|+.|..|++.++|+.|.|.+.=--. .....|...|..
T Consensus 47 ~~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdGr~Y~~~l~~~~~~~~~~y~~~f~t 103 (157)
T PF08547_consen 47 NNGGFASVRTPSFPSPLDLSGYDGLELRVRGDGRTYKVNLRTDNDEPSDSYQARFQT 103 (157)
T ss_pred CCCceEEEEEccCCCcCCCCCCcEEEEEEEcCCceEEEEEEeCCCCCCceEEEEEec
Confidence 3456766555 6777889999999999999999987642222 344566666654
No 55
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=27.84 E-value=3.5e+02 Score=23.25 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe-eccCCCCcEEEE
Q 007445 497 AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA-VNLQSSESTKLG 543 (603)
Q Consensus 497 ~~~~s~f~~vpgl~g~~g~vsles~~~pg~~l~~~-~~~~~g~~~~l~ 543 (603)
.....+|+|+| .| +|++.|.+. ..|..|-.. .+...|+.|.+-
T Consensus 48 ~~~~Q~W~i~~--~~-~g~y~I~n~-~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 48 GNDNQQWKIEP--VG-DGYYRIRNK-NSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp SSGGGEEEEEE--ST-TSEEEEEET-STTEEEEEGGGSSSTTEBEEEE
T ss_pred CCcCcEEEEEE--ec-CCeEEEEEC-CCCcEEEECCCCCCCCCEEEEE
Confidence 36789999998 45 589999999 668888753 444568888775
No 56
>PLN00119 endoglucanase
Probab=27.50 E-value=1.2e+02 Score=34.59 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHH
Q 007445 101 LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS 176 (603)
Q Consensus 101 ~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERa 176 (603)
+++++|+..|+....++..-....... ...|+++.-.=+++.-+-.||+.|||.+|.++++..
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~-------------~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNA-------------GGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCC-------------CCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 458899999999877653211111100 122444444557888889999999999999998743
No 57
>PHA02811 putative host range protein; Provisional
Probab=26.07 E-value=92 Score=30.93 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.6
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc--C-CCcEEEECCeecCCC
Q 007445 282 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 323 (603)
Q Consensus 282 ~V~l~v~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~~~~~ 323 (603)
.+.|.++. .+...|-+-|| |.|.. . ...++++||..+...
T Consensus 32 ~I~Lk~~~-~Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQ-QKKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCC-ccEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 56666665 35667888889 99943 1 157899999988754
No 58
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=26.05 E-value=1e+02 Score=29.61 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=28.0
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc---CCCcEEEECCeecCCC
Q 007445 282 RVTLTFSSKGSGLTTSLNLRIPTWTS---SNGAKATLNGQDLPLP 323 (603)
Q Consensus 282 ~V~l~v~~~~~~~~ftL~LRIP~Wa~---~~~~~v~VNG~~~~~~ 323 (603)
.+.|.++. .+.-.|-+-|| |.|.. -....+++||..+...
T Consensus 32 ~I~lk~~~-~K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKE-TKKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCC-ccEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 56666654 35667888899 99953 1257889999987653
No 59
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=25.22 E-value=1.9e+02 Score=29.18 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=34.2
Q ss_pred eeEEEEeccCCc-c--CCCcEEEECCeecCCCC-CCCEEEEE-----------eecCCCCEEEEEeccee
Q 007445 295 TTSLNLRIPTWT-S--SNGAKATLNGQDLPLPS-PGNFLSVT-----------KTWSSDDKLTIQLPLTL 349 (603)
Q Consensus 295 ~ftL~LRIP~Wa-~--~~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~I~L~Lpm~l 349 (603)
...+.++.|... + .-+-.|.|||....... .++.+.++ ..|+.||.|.|+.+|++
T Consensus 21 ~~~l~i~~~~~~~~~l~~g~SIavnGVcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~~VNlEral~~ 90 (206)
T PRK13020 21 LNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKF 90 (206)
T ss_pred cEEEEEEeChhHhccCCCCCEEEECCEEEEEEEECCCEEEEEEhHHHHhhCchhhccCCCEEeeEecccC
Confidence 345666666543 1 01567889998766432 34444443 26889999988877765
No 60
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=25.07 E-value=49 Score=35.66 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=22.3
Q ss_pred HHHHHHHhHcCCHHHHHHHhhccc
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFDK 61 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~~ 61 (603)
-++.-||++|||.+||.=|+.|-.
T Consensus 333 YvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 333 YVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred hhhHhHHHHcCcHHHHHHHHHHHH
Confidence 789999999999999999999964
No 61
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=24.97 E-value=67 Score=32.00 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=44.0
Q ss_pred HhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCC----CCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhc-
Q 007445 90 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG----EFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWT- 164 (603)
Q Consensus 90 ~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~----E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~t- 164 (603)
.++.|++|||++|+++|+...+-.. .-.--||+-.. -.|-+.|- ....++.--++|+...-|+.+.
T Consensus 39 l~RAy~~t~d~~Yl~aA~~al~~f~--~~~~~GG~~~~~~~~~~wyeEYp-------~~p~s~VLNGfiysL~GLyd~~~ 109 (189)
T PF06662_consen 39 LARAYQLTGDEKYLDAAKKALNSFK--VPVEEGGVLATFKNKYPWYEEYP-------TTPPSYVLNGFIYSLIGLYDYYR 109 (189)
T ss_pred HHHHHHhHCCHHHHHHHHHHHHHhc--ChHhhCCeeEEecCCcEeEeecC-------CCCCCEEeehHHHHHHHHHHHHH
Confidence 4466999999999999999877652 22234665432 12222221 1234555567777777766655
Q ss_pred --CCCchHHHHH
Q 007445 165 --KEIAYADYYE 174 (603)
Q Consensus 165 --gD~~YaD~~E 174 (603)
++.+..+.++
T Consensus 110 ~~~~~~A~~lf~ 121 (189)
T PF06662_consen 110 LTGDEEAKELFD 121 (189)
T ss_pred hcCCHHHHHHHH
Confidence 3444444333
No 62
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.38 E-value=63 Score=27.77 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.6
Q ss_pred hhhcccchh-----HHHHHHHhHcCC
Q 007445 29 LNEEAGGMN-----DVLYKLFCITQD 49 (603)
Q Consensus 29 l~~E~GGmn-----e~L~~LY~iTGd 49 (603)
|.+|+||-. |+|.+||++..+
T Consensus 38 LskeRgG~IP~~V~~sl~kL~~La~~ 63 (82)
T PF11020_consen 38 LSKERGGQIPEKVMDSLSKLYKLAKE 63 (82)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence 789999976 999999988644
No 63
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=23.48 E-value=2.9e+02 Score=30.61 Aligned_cols=129 Identities=15% Similarity=0.049 Sum_probs=73.6
Q ss_pred HHHHHHHhHcCCHHHHHHHhhcccC---CcchhhhhcCCCCCCccc---cccccee------hh--------HhHHHHHh
Q 007445 38 DVLYKLFCITQDPKHLMLAHLFDKP---CFLGLLALQADDISGFHS---NTHIPIV------IG--------SQMRYEVT 97 (603)
Q Consensus 38 e~L~~LY~iTGd~~yL~lA~~F~~~---~~~~~l~~~~D~l~g~ha---nthip~~------~G--------~a~~Y~~T 97 (603)
|+|.=-|+.||+++||+.|..+.+. .|++.. +-.-++|. =.+.+-+ =| +.+..+..
T Consensus 181 EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~----~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~ 256 (388)
T COG2942 181 EAMLAAYEATGEKTWLDRADRIADLIISRFADAE----SGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRR 256 (388)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcc----cCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHh
Confidence 9999999999999999999887432 222221 11111110 0122222 13 23446777
Q ss_pred CChhHHHHHHHHHHHHhhccee-eecCCCCCCCC-CCCcccccCCCCCccccchhHHHHHHHHHHHhhcC-CCchHHHHH
Q 007445 98 GDQLHKTISMFFMDIVNSSHTY-ATGGTSVGEFW-SDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTK-EIAYADYYE 174 (603)
Q Consensus 98 gd~~y~~aa~~fwd~v~~~h~y-~tGG~g~~E~f-~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tg-D~~YaD~~E 174 (603)
++......|+..+++...+-.= .+||..-.=.+ +.+.+ ...=.=...+.+|-+-.|-..++ +.+|-+.+.
T Consensus 257 ~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d-------~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~ 329 (388)
T COG2942 257 GRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHD-------RQQRLWPQTEALKAAVALAETTGARERYWQWYA 329 (388)
T ss_pred chhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCC-------HHHhhChHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8887888888877776542211 33433211000 01111 11112223445899999999999 999999999
Q ss_pred HHH
Q 007445 175 RSL 177 (603)
Q Consensus 175 Ral 177 (603)
|+.
T Consensus 330 R~~ 332 (388)
T COG2942 330 RAW 332 (388)
T ss_pred HHH
Confidence 875
No 64
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=1.5e+02 Score=27.55 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=22.2
Q ss_pred EEEEeccCCccCCCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecce
Q 007445 297 SLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLT 348 (603)
Q Consensus 297 tL~LRIP~Wa~~~~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~I~L~Lpm~ 348 (603)
+...=||.|+. ++||..|.|+ .|++.|.-+..
T Consensus 20 ~~~~~ip~wa~-----------------~~~F~sIt~t---~eelsivc~~~ 51 (128)
T COG3603 20 DAGSAIPAWAD-----------------GPGFWSITRT---PEELSIVCLAD 51 (128)
T ss_pred ccCCcCccccC-----------------CCceEEEEcC---CceEEEEeecc
Confidence 44556899987 4789999985 56666655443
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=22.65 E-value=54 Score=34.79 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHhhcCCCchHHHHHHHHhccccccCCCCCCCcEEEecCCC
Q 007445 148 CTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLA 200 (603)
Q Consensus 148 Cas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~vla~q~~~~~g~~~Y~~Pl~ 200 (603)
=+|+.-|++.-++++.|+|.+|-+-.+|.+ +-+|.+|.+ .+|.-+|+ |+.
T Consensus 39 ~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl-~ylL~aQyp-nGGWPQ~y-P~~ 88 (289)
T PF09492_consen 39 DATTTEIRFLARVYQATKDPRYREAFLKGL-DYLLKAQYP-NGGWPQFY-PLR 88 (289)
T ss_dssp GTTHHHHHHHHHHHHHCG-HHHHHHHHHHH-HHHHHHS-T-TS--BSEC-S--
T ss_pred hhHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHhhCC-CCCCCccC-CCC
Confidence 466777888899999999999999999986 788999998 66666654 554
No 66
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=20.61 E-value=1.3e+02 Score=33.57 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred cccceehhHhHHHHHhCChhHHHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccC--CCCCccccchhHHHHHH-HH
Q 007445 82 THIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASN--LDSNTEESCTTYNMLKV-SR 158 (603)
Q Consensus 82 thip~~~G~a~~Y~~Tgd~~y~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~--l~~~~~ETCas~nmlkl-~~ 158 (603)
+.|.+.-|....|.++|++.|+..|..+=|.+..--.-.++--=++-..+....-+.. -...++| +..+++ -|
T Consensus 176 tTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaE----vttiQlEfr 251 (546)
T KOG2431|consen 176 TTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAE----VTTIQLEFR 251 (546)
T ss_pred hhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhh----heeeeeeHH
Confidence 5566667899999999999999877777676654333333322111111000000000 0122233 223333 47
Q ss_pred HHHhhcCCCchHHHHHHHHhccccccCCCC-CCCcEEEecCC
Q 007445 159 HLFRWTKEIAYADYYERSLTNGVLGIQRGT-EPGVMIYLLPL 199 (603)
Q Consensus 159 ~Lf~~tgD~~YaD~~ERalyN~vla~q~~~-~~g~~~Y~~Pl 199 (603)
.|-++|||++|-|..|++. -+|...-.-+ ++=+-+|.+|-
T Consensus 252 ~Ls~ltgd~kY~~~a~kv~-ehih~~~~~~~dGLvPi~in~~ 292 (546)
T KOG2431|consen 252 YLSRLTGDPKYEELAEKVT-EHIHGLGKKKHDGLVPIFINPN 292 (546)
T ss_pred HHHhhcCCchHHHHHHHHH-HHHhccCccccCCeeeEEEcCC
Confidence 8999999999999999864 3333321111 22244777774
No 67
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=20.35 E-value=1e+02 Score=32.30 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred chhHHHHHHH-hHcCCHHHHHHHhhcccCCcchhhhhcCCCCCCccccc---------ccc--eehhHhHHHHHhCChhH
Q 007445 35 GMNDVLYKLF-CITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNT---------HIP--IVIGSQMRYEVTGDQLH 102 (603)
Q Consensus 35 Gmne~L~~LY-~iTGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~hant---------hip--~~~G~a~~Y~~Tgd~~y 102 (603)
|+.-+|.++| +.|++++++++++...+...-........ ++....+. |-. +.......++..+|+.+
T Consensus 171 Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~ 249 (355)
T PF05147_consen 171 GILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGG-WPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEY 249 (355)
T ss_dssp HHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT---SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCC-CCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHH
Q ss_pred HHHHHHHHHHHhhcceeeecCCCCCCCCCCCcccccCCCCCccccchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 007445 103 KTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 177 (603)
Q Consensus 103 ~~aa~~fwd~v~~~h~y~tGG~g~~E~f~~p~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (603)
++.++...+.+.++.. .. ...+=.|...+.+.+...|.+.+++..|.+.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~---------~~------------~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 250 DEEAEQALESILQKGL---------FL------------NNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp HHHHHHHHHHHHHH-T---------CT------------TSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc---------cC------------CCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHH
Done!