Query 007450
Match_columns 603
No_of_seqs 414 out of 1773
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 23:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 6.4E-31 1.4E-35 247.1 14.7 144 121-265 15-158 (198)
2 smart00195 DSPc Dual specifici 100.0 1.1E-29 2.5E-34 234.4 17.3 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 1.5E-28 3.2E-33 255.1 18.0 147 120-266 72-220 (285)
4 KOG1717 Dual specificity phosp 100.0 1.4E-28 2.9E-33 245.4 11.9 141 123-264 172-314 (343)
5 cd00127 DSPc Dual specificity 100.0 1.8E-27 3.9E-32 218.7 16.8 138 122-259 1-139 (139)
6 PF00782 DSPc: Dual specificit 99.9 1.3E-27 2.9E-32 218.8 13.9 131 130-261 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 3.6E-23 7.7E-28 232.5 17.0 141 121-262 93-237 (547)
8 KOG0443 Actin regulatory prote 99.9 1.1E-23 2.4E-28 235.1 12.1 149 269-438 513-662 (827)
9 PTZ00242 protein tyrosine phos 99.8 2.7E-19 5.8E-24 172.2 14.8 144 120-265 8-161 (166)
10 KOG1719 Dual specificity phosp 99.8 1.5E-18 3.4E-23 161.8 11.9 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.8 3.5E-18 7.6E-23 171.6 14.9 122 139-263 107-230 (241)
12 KOG0443 Actin regulatory prote 99.7 6.3E-18 1.4E-22 189.3 8.4 169 273-460 139-321 (827)
13 KOG1720 Protein tyrosine phosp 99.6 3.8E-15 8.2E-20 145.7 13.5 118 141-260 87-206 (225)
14 smart00262 GEL Gelsolin homolo 99.6 7.8E-15 1.7E-19 126.5 9.2 76 292-367 13-89 (90)
15 COG2453 CDC14 Predicted protei 99.6 1.9E-14 4.1E-19 140.2 11.9 96 164-262 69-165 (180)
16 PF05706 CDKN3: Cyclin-depende 99.4 6.2E-13 1.4E-17 127.1 8.5 107 128-235 41-168 (168)
17 KOG0444 Cytoskeletal regulator 99.4 5.5E-14 1.2E-18 154.7 0.9 145 270-437 1038-1192(1255)
18 KOG0444 Cytoskeletal regulator 99.4 3.4E-13 7.4E-18 148.6 5.6 142 269-415 618-770 (1255)
19 PF03162 Y_phosphatase2: Tyros 99.3 5.3E-12 1.1E-16 121.5 8.5 119 119-240 3-129 (164)
20 PF00626 Gelsolin: Gelsolin re 99.3 2.3E-12 5.1E-17 107.0 5.3 69 294-362 7-76 (76)
21 TIGR01244 conserved hypothetic 99.2 1.2E-10 2.6E-15 108.6 13.5 117 123-246 2-129 (135)
22 KOG0445 Actin regulatory prote 99.1 1.4E-10 2.9E-15 128.4 9.0 149 271-449 643-797 (919)
23 KOG2836 Protein tyrosine phosp 99.0 3.7E-09 7.9E-14 97.3 12.4 116 140-258 33-152 (173)
24 smart00012 PTPc_DSPc Protein t 98.9 5.9E-09 1.3E-13 90.2 10.2 87 169-255 4-99 (105)
25 smart00404 PTPc_motif Protein 98.9 5.9E-09 1.3E-13 90.2 10.2 87 169-255 4-99 (105)
26 PF04273 DUF442: Putative phos 98.8 1.2E-08 2.7E-13 92.1 9.1 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.7 6.6E-08 1.4E-12 112.3 11.1 99 128-229 261-369 (986)
28 COG5350 Predicted protein tyro 98.7 1.1E-07 2.4E-12 89.4 9.8 113 141-254 25-147 (172)
29 cd00047 PTPc Protein tyrosine 98.6 2.1E-07 4.6E-12 93.3 9.3 82 175-256 138-226 (231)
30 smart00194 PTPc Protein tyrosi 98.5 4.8E-07 1E-11 92.5 9.5 82 175-256 166-253 (258)
31 PF13350 Y_phosphatase3: Tyros 98.4 1.8E-06 4E-11 82.6 9.3 110 126-236 16-158 (164)
32 KOG1572 Predicted protein tyro 98.3 5.9E-06 1.3E-10 83.1 10.9 120 119-241 56-187 (249)
33 KOG0445 Actin regulatory prote 98.2 1.5E-06 3.3E-11 97.1 6.5 101 269-375 220-327 (919)
34 PRK15375 pathogenicity island 98.2 4.7E-06 1E-10 92.1 10.2 89 174-262 430-529 (535)
35 COG3453 Uncharacterized protei 98.2 2.4E-05 5.3E-10 71.2 11.8 112 122-241 2-125 (130)
36 PF04179 Init_tRNA_PT: Initiat 98.1 2.7E-05 5.9E-10 86.1 12.0 135 124-258 290-449 (451)
37 KOG2283 Clathrin coat dissocia 98.0 4.2E-05 9.1E-10 84.2 12.2 112 150-262 55-174 (434)
38 PF00102 Y_phosphatase: Protei 98.0 3.6E-05 7.8E-10 76.3 9.8 69 188-256 153-230 (235)
39 PHA02742 protein tyrosine phos 97.8 0.0001 2.2E-09 77.8 10.1 52 201-252 229-285 (303)
40 PF14566 PTPlike_phytase: Inos 97.8 4.8E-05 1E-09 72.3 6.6 59 165-225 90-148 (149)
41 PHA02747 protein tyrosine phos 97.8 0.00011 2.3E-09 78.0 9.5 54 202-255 230-288 (312)
42 PHA02746 protein tyrosine phos 97.7 0.00013 2.9E-09 77.7 9.7 53 202-254 248-305 (323)
43 PHA02740 protein tyrosine phos 97.7 0.00018 3.9E-09 75.9 10.1 51 201-251 221-276 (298)
44 PHA02738 hypothetical protein; 97.6 0.00026 5.7E-09 75.3 9.7 54 201-254 227-285 (320)
45 COG2365 Protein tyrosine/serin 97.5 0.00014 3E-09 74.8 5.9 123 127-249 52-184 (249)
46 KOG2386 mRNA capping enzyme, g 97.4 0.00041 8.8E-09 75.2 7.6 115 148-262 63-185 (393)
47 KOG0792 Protein tyrosine phosp 97.4 0.00054 1.2E-08 80.8 8.9 80 175-254 1036-1121(1144)
48 COG5599 PTP2 Protein tyrosine 96.8 0.0026 5.6E-08 65.4 6.8 78 175-256 193-287 (302)
49 KOG0790 Protein tyrosine phosp 96.8 0.0018 4E-08 70.4 5.7 78 169-249 416-507 (600)
50 KOG0789 Protein tyrosine phosp 96.5 0.0074 1.6E-07 65.6 8.3 53 200-252 298-356 (415)
51 KOG0791 Protein tyrosine phosp 95.8 0.033 7.1E-07 59.8 8.2 62 201-262 287-353 (374)
52 KOG0793 Protein tyrosine phosp 95.3 0.066 1.4E-06 61.3 8.8 69 194-262 919-995 (1004)
53 KOG1984 Vesicle coat complex C 95.1 0.062 1.3E-06 63.0 8.2 56 272-327 858-913 (1007)
54 PF14671 DSPn: Dual specificit 94.9 0.14 3.1E-06 48.5 8.6 102 125-242 3-111 (141)
55 COG5028 Vesicle coat complex C 91.9 0.41 8.8E-06 55.8 7.3 32 296-327 737-768 (861)
56 KOG4228 Protein tyrosine phosp 91.0 0.28 6.1E-06 59.2 5.2 57 189-245 714-779 (1087)
57 PTZ00395 Sec24-related protein 91.0 0.84 1.8E-05 56.4 9.1 33 294-326 1433-1465(1560)
58 KOG4471 Phosphatidylinositol 3 86.2 1.2 2.6E-05 50.8 5.6 39 187-225 360-399 (717)
59 KOG4228 Protein tyrosine phosp 83.2 1.8 3.9E-05 52.6 5.6 45 201-245 1018-1067(1087)
60 KOG1985 Vesicle coat complex C 82.5 1.2 2.7E-05 52.3 3.9 31 296-326 764-794 (887)
61 PF06602 Myotub-related: Myotu 69.9 9.5 0.0002 41.5 6.2 21 199-219 229-249 (353)
62 KOG1089 Myotubularin-related p 68.8 9.1 0.0002 44.0 5.9 36 190-225 332-369 (573)
63 cd01518 RHOD_YceA Member of th 68.5 14 0.0003 31.9 5.9 29 199-230 59-87 (101)
64 PLN00162 transport protein sec 68.1 16 0.00035 43.8 8.1 70 295-364 635-720 (761)
65 COG0607 PspE Rhodanese-related 62.5 17 0.00037 31.2 5.4 69 143-226 14-84 (110)
66 PLN02160 thiosulfate sulfurtra 55.9 17 0.00036 33.9 4.3 30 198-230 78-107 (136)
67 PRK01415 hypothetical protein; 55.6 23 0.00049 36.8 5.6 30 198-230 168-197 (247)
68 cd01533 4RHOD_Repeat_2 Member 53.8 25 0.00053 30.8 4.9 27 200-229 65-91 (109)
69 PRK11784 tRNA 2-selenouridine 52.9 1.2E+02 0.0026 33.0 10.8 64 302-367 161-236 (345)
70 PF00581 Rhodanese: Rhodanese- 46.8 74 0.0016 27.1 6.8 82 146-230 10-98 (113)
71 PF03861 ANTAR: ANTAR domain; 45.5 30 0.00066 27.2 3.7 27 215-241 14-40 (56)
72 cd01448 TST_Repeat_1 Thiosulfa 44.5 35 0.00076 30.3 4.4 31 198-230 76-106 (122)
73 smart00400 ZnF_CHCC zinc finge 41.6 25 0.00054 27.6 2.6 32 205-238 23-54 (55)
74 cd01528 RHOD_2 Member of the R 41.5 54 0.0012 28.2 5.0 28 200-230 57-84 (101)
75 PRK10886 DnaA initiator-associ 40.3 57 0.0012 32.6 5.5 38 183-223 23-60 (196)
76 cd01523 RHOD_Lact_B Member of 39.7 34 0.00074 29.3 3.5 29 199-230 59-87 (100)
77 PRK00142 putative rhodanese-re 38.9 51 0.0011 35.3 5.3 28 200-230 170-197 (314)
78 PRK05320 rhodanese superfamily 38.9 55 0.0012 34.0 5.4 28 200-230 174-201 (257)
79 PF03668 ATP_bind_2: P-loop AT 38.5 39 0.00084 35.9 4.2 17 203-219 244-260 (284)
80 cd01520 RHOD_YbbB Member of th 37.6 55 0.0012 29.7 4.6 30 198-229 83-112 (128)
81 TIGR03865 PQQ_CXXCW PQQ-depend 37.4 37 0.00081 32.6 3.6 30 199-230 114-143 (162)
82 cd01532 4RHOD_Repeat_1 Member 35.5 51 0.0011 28.0 3.9 30 200-230 49-78 (92)
83 PRK05416 glmZ(sRNA)-inactivati 34.0 44 0.00095 35.4 3.8 35 185-219 222-263 (288)
84 cd01522 RHOD_1 Member of the R 33.7 59 0.0013 29.1 4.1 29 199-230 62-90 (117)
85 PRK14116 gpmA phosphoglyceromu 32.0 1E+02 0.0023 31.0 6.0 49 180-234 149-201 (228)
86 cd01534 4RHOD_Repeat_3 Member 31.0 58 0.0013 27.6 3.5 27 200-229 55-81 (95)
87 PRK05728 DNA polymerase III su 30.3 63 0.0014 30.5 3.9 25 186-210 14-38 (142)
88 COG2927 HolC DNA polymerase II 29.3 67 0.0015 30.8 3.8 21 189-209 17-37 (144)
89 KOG0235 Phosphoglycerate mutas 28.8 1.9E+02 0.0041 29.5 7.2 52 179-236 130-185 (214)
90 PRK13938 phosphoheptose isomer 28.7 1.2E+02 0.0027 30.2 5.8 41 181-224 25-65 (196)
91 PF01807 zf-CHC2: CHC2 zinc fi 28.6 58 0.0013 28.6 3.1 38 205-244 54-91 (97)
92 COG4738 Predicted transcriptio 28.0 48 0.001 30.6 2.4 32 210-242 23-54 (124)
93 PRK14118 gpmA phosphoglyceromu 27.7 1.3E+02 0.0027 30.4 5.8 50 180-235 148-201 (227)
94 COG0279 GmhA Phosphoheptose is 25.9 1E+02 0.0022 30.4 4.4 32 183-217 23-54 (176)
95 cd01447 Polysulfide_ST Polysul 25.8 69 0.0015 27.2 3.0 29 198-229 58-86 (103)
96 cd01519 RHOD_HSP67B2 Member of 25.3 85 0.0018 26.9 3.5 29 199-230 64-92 (106)
97 PF04364 DNA_pol3_chi: DNA pol 25.1 75 0.0016 29.7 3.4 24 187-210 15-38 (137)
98 PRK06646 DNA polymerase III su 24.4 92 0.002 30.0 3.8 27 185-211 13-39 (154)
99 cd01525 RHOD_Kc Member of the 24.2 93 0.002 26.6 3.6 26 201-229 65-90 (105)
100 PRK14119 gpmA phosphoglyceromu 23.8 1.5E+02 0.0033 29.7 5.6 49 180-234 149-201 (228)
101 cd01443 Cdc25_Acr2p Cdc25 enzy 23.0 1.9E+02 0.0042 25.4 5.5 19 200-218 65-83 (113)
102 cd01529 4RHOD_Repeats Member o 23.0 91 0.002 26.4 3.3 28 199-229 54-81 (96)
103 PHA02540 61 DNA primase; Provi 23.0 1.1E+02 0.0023 33.4 4.4 38 203-243 53-91 (337)
104 PRK05772 translation initiatio 22.4 1.1E+02 0.0025 33.5 4.5 16 197-212 163-178 (363)
105 PRK11493 sseA 3-mercaptopyruva 22.4 59 0.0013 33.9 2.3 29 199-230 229-257 (281)
106 cd01526 RHOD_ThiF Member of th 22.1 87 0.0019 28.1 3.1 28 199-229 70-97 (122)
107 PRK01112 phosphoglyceromutase; 21.8 1.9E+02 0.0041 29.3 5.8 52 179-236 147-202 (228)
108 TIGR02981 phageshock_pspE phag 21.7 1.7E+02 0.0037 25.8 4.8 27 200-229 57-83 (101)
109 PTZ00123 phosphoglycerate muta 21.6 1.9E+02 0.0041 29.4 5.7 51 179-235 135-189 (236)
110 cd01444 GlpE_ST GlpE sulfurtra 21.6 1.4E+02 0.0031 24.9 4.1 29 198-229 53-81 (96)
111 PRK14117 gpmA phosphoglyceromu 21.6 1.9E+02 0.0041 29.2 5.7 51 179-235 148-202 (230)
112 PF02673 BacA: Bacitracin resi 21.3 92 0.002 32.5 3.4 27 209-237 159-185 (259)
113 PRK10287 thiosulfate:cyanide s 20.8 1.8E+02 0.0039 25.9 4.7 18 200-218 59-76 (104)
114 TIGR00853 pts-lac PTS system, 20.7 82 0.0018 27.7 2.5 16 201-217 3-18 (95)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=6.4e-31 Score=247.13 Aligned_cols=144 Identities=32% Similarity=0.513 Sum_probs=135.8
Q ss_pred ccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 007450 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (603)
Q Consensus 121 ~~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ 200 (603)
..+++|++.|||++-..|.+...|+++|||+|||.+.+. |+..-.++.|..+|+.|.+...+.++|+.+.+.|+....+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 458999999999987888899999999999999987655 6677788999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhccC
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~~~ 265 (603)
||++||||.+|+|||+++|+||||++.+|++.||+.+||++||+|.||-|||+||..||.++++.
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999764
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.1e-29 Score=234.39 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=128.7
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCC
Q 007450 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (603)
Q Consensus 123 ~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~gg 202 (603)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...+..+++||+.++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999986543 34567899999999998778888999999999999999999
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhh
Q 007450 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (603)
Q Consensus 203 kVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~ 261 (603)
+|||||.+|+|||+++++||||+.+|+++++|+++|+++||.+.||.+|+.||..|+++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.5e-28 Score=255.08 Aligned_cols=147 Identities=41% Similarity=0.642 Sum_probs=135.6
Q ss_pred cccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 007450 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (603)
Q Consensus 120 ~~~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a 197 (603)
...+.+|.|+||+|+...+.+.+.++++||++|||+....... .....+.|+++++.|.+..++..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987544332 23348999999999999999999999999999999
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhccCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~~~~ 266 (603)
+.+|++|||||.+|+|||+|++|||||++++|++++|+++|+.+||.+.||.+|+.||++|++.+....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987653
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=1.4e-28 Score=245.41 Aligned_cols=141 Identities=29% Similarity=0.570 Sum_probs=132.8
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccC--CCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 007450 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFK--GDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (603)
Q Consensus 123 ~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~~~~--~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ 200 (603)
+.+|+|+||||+..++.+.+.|+++||++|||++. ..|+.|+ +++.|+.||+.|+..+++.++|++|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTp-nlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTP-NLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCC-CCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 66899999999999999999999999999999875 4466665 47899999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhcc
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~~ 264 (603)
+..|||||-+|+|||+||++||||++..+++.+||++|+.++..|.||.+||.||..|++.+..
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999988743
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=1.8e-27 Score=218.68 Aligned_cols=138 Identities=42% Similarity=0.676 Sum_probs=128.0
Q ss_pred cceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 007450 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (603)
Q Consensus 122 ~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p-~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ 200 (603)
++++|.|+||+|+.+++.+.+.|+++||++||||+..... .....++.|.++|+.|.+..++...++.+++||+..+++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999865543 334578999999999988888888899999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHh
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~E 259 (603)
|++|||||.+|+|||+++++||||..+++++++|+++||++||.+.||.+|+.||.+||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=1.3e-27 Score=218.77 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=121.6
Q ss_pred eEECChhhhCCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEE
Q 007450 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (603)
Q Consensus 130 LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVH 207 (603)
||||+.+.+. .+.|+++||++||||+.+.... ....++.|+++|+.|....++...++.+++||++++++|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998654331 335689999999999888888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhh
Q 007450 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (603)
Q Consensus 208 C~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~ 261 (603)
|.+|+|||+++++||||++++|++++|+++|+++||.+.||.+|++||.+|+++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999874
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=232.49 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=126.7
Q ss_pred ccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC---CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 007450 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (603)
Q Consensus 121 ~~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p---~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a 197 (603)
+.+++|.|+||||+.+.+.|.+.|+++||++||||+.+... .....++.|+++|+.|...+++ ++|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999865422 2345678999999999877654 7899999999999
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhh
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~-~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l 262 (603)
+++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||.+++++|.+|.+..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999977 589999999999999999999999999999987664
No 8
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.90 E-value=1.1e-23 Score=235.05 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=129.3
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHHHHhhcCCc
Q 007450 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (603)
Q Consensus 269 p~sv~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~~~~~ 348 (603)
+...+|||||+|..+++.+.+ ||++.+++|||.|||||++++.+|+|+|++|+..+|..|...+.-|. .++
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-----~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-----RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----cCC
Confidence 345589999999999888877 99999999999999999999999999999999966666665555444 355
Q ss_pred eEEecCCCChhhhHHhcCCCccCCCCC-ccccccCCceeeEeeeCCccEEEecccCCCcCCCChhhHhhhhcCCCCCCee
Q 007450 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDGGVVPPFS 427 (603)
Q Consensus 349 i~~v~EG~E~~eFW~~LGgk~~y~~~~-~~~~~~~~prLf~~Sd~sG~~v~e~~~~~~Q~DLd~~~v~~a~~gg~~p~~~ 427 (603)
.+.+.||+||++||++|||+.+|+... ........||||.||+.+|.|+.+++..|+|+||+.++| +
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi------------~ 651 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDI------------M 651 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccce------------E
Confidence 677999999999999999999999877 445567889999999999999888888999999999987 4
Q ss_pred ecCCCCceeec
Q 007450 428 VSNAGSETCVP 438 (603)
Q Consensus 428 ~~~~~~e~~l~ 438 (603)
++|++.|||+=
T Consensus 652 lLDt~~evfvW 662 (827)
T KOG0443|consen 652 LLDTWSEVFVW 662 (827)
T ss_pred EEecCceEEEE
Confidence 78999999873
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=2.7e-19 Score=172.22 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=114.7
Q ss_pred cccceeccCCeEECChhhh----CCHHHHHHCCCcEEEEcccCCCC-Ccc-CCCcEEEEEEccCCCCCchHHHHHHHHHH
Q 007450 120 DKECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDY 193 (603)
Q Consensus 120 ~~~~s~I~p~LyLGs~~~a----~d~~~Lk~~GIt~ILNl~~e~~p-~~~-~~~i~yl~ipI~D~~~~dl~~~l~~av~f 193 (603)
++.++-|+.++..=..+.. .+++.|+++||++||+++....+ +.+ ..++.++++|+.|...+.. ..+.+.+++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~ 86 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRL 86 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHH
Confidence 4556667777776665555 34588999999999998754322 122 3588999999988765544 456777788
Q ss_pred HHHHHhc----CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhccC
Q 007450 194 FEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (603)
Q Consensus 194 I~~a~~~----ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~~~ 265 (603)
+++.+.. |++|+|||.+|+|||+++++||||...++++++|+++||++||.+ .+..++.+|.+|.+...+.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 8877654 999999999999999999999999998899999999999999986 4789999999999876543
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.77 E-value=1.5e-18 Score=161.77 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=121.4
Q ss_pred eccCCeEECChhhh-CCHHHHHHCCCcEEEEcccCCCCC-----ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 007450 125 RIADHIYLGSDAVA-KNRGILRQNGITHVLNCVGFVCPE-----YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (603)
Q Consensus 125 ~I~p~LyLGs~~~a-~d~~~Lk~~GIt~ILNl~~e~~p~-----~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~ 198 (603)
+|.+++.+|-.+.. .+.+.++++|+..|+.|....+-. +-.-+++++.+|..|.....-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 78888888876654 578899999999999986432111 113478999999999877666688999999999999
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhcc
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~~ 264 (603)
..|+.|+|||.+|++||+|+|+||||+..+|+.++|+++||++||.|-..+++++.|.+|.+..-.
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887644
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=3.5e-18 Score=171.57 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=105.8
Q ss_pred CCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHH
Q 007450 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (603)
Q Consensus 139 ~d~~~Lk~~GIt~ILNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSa 216 (603)
..++.|+++||++||++++...+. ....++.++++|+.|...+.. ..+.+.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 566899999999999987644321 234589999999999877764 67788889999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhhc
Q 007450 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (603)
Q Consensus 217 aVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l~ 263 (603)
++++||||. .|+++++|+++||.+||.+ +|..++..|.+|++...
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 999999997 6999999999999999987 58899999999998764
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.72 E-value=6.3e-18 Score=189.35 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=131.1
Q ss_pred ceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHHHHhh-cCCceEE
Q 007450 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITS 351 (603)
Q Consensus 273 ~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~-~~~~i~~ 351 (603)
.||||++|.. .|+..+|++.++|||.+||||||+++.||+|+|++++..||.+|++.+++|++.++ +.++|.+
T Consensus 139 ~rL~~~KGkr------~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGKR------NVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccce------eEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 4999999964 47888999999999999999999999999999999999999999999999999988 7789999
Q ss_pred ecCCC-----ChhhhHHhcCCCcc-CCCCCc----cccccCCceeeEeeeCCccEEEe--cccCCCcCCCChhhHhhhhc
Q 007450 352 IKEGE-----EPLEFWDALVRGQF-FADGCN----KEEVKNEQVSFSGSNKIATLMQD--GAGEIDEYDLDFELFHKALD 419 (603)
Q Consensus 352 v~EG~-----E~~eFW~~LGgk~~-y~~~~~----~~~~~~~prLf~~Sd~sG~~v~e--~~~~~~Q~DLd~~~v~~a~~ 419 (603)
|++|+ +..+||..+||..+ .+.... +.......+||+|||++|.+... ..++++|+.||.+..|
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCY---- 288 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCY---- 288 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeE----
Confidence 99876 34689999998554 433221 22245789999999999999333 3345999999998765
Q ss_pred CCCCCCeeecCCC-CceeecCcccchhhhhhhhcccchhhhh
Q 007450 420 GGVVPPFSVSNAG-SETCVPARESGWCRLRRKFVNGLMREFV 460 (603)
Q Consensus 420 gg~~p~~~~~~~~-~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 460 (603)
++|+| .|+|+=---. =+.=-||-|...-.+|+
T Consensus 289 --------ILD~g~~~IfVW~Gr~-as~~ERkaAm~~AeeFl 321 (827)
T KOG0443|consen 289 --------ILDCGGGEIFVWKGRQ-ASLDERKAAMSSAEEFL 321 (827)
T ss_pred --------EEecCCceEEEEeCCC-CCHHHHHHHHHHHHHHH
Confidence 55555 6666521100 01223677777778888
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.62 E-value=3.8e-15 Score=145.68 Aligned_cols=118 Identities=18% Similarity=0.331 Sum_probs=98.3
Q ss_pred HHHHHHCCCcEEEEcccCCCC-C-ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHH
Q 007450 141 RGILRQNGITHVLNCVGFVCP-E-YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSL 218 (603)
Q Consensus 141 ~~~Lk~~GIt~ILNl~~e~~p-~-~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaV 218 (603)
...++.++++.|+.+.+...+ . +...+|.++++++.|...++. ..+.+.++.++.+.+ ||+|.|||++|+|||+++
T Consensus 87 ~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~l 164 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTL 164 (225)
T ss_pred HHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHH
Confidence 356778999999998764432 2 335579999999999888876 567778888888888 999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhh
Q 007450 219 VIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (603)
Q Consensus 219 viAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek 260 (603)
++||||+.+|++..||+++||..||.+-..+.+...|.++..
T Consensus 165 iAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 165 IACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999977777776666665544
No 14
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.57 E-value=7.8e-15 Score=126.52 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=69.5
Q ss_pred cccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHHHHhh-cCCceEEecCCCChhhhHHhcCC
Q 007450 292 KLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (603)
Q Consensus 292 k~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~-~~~~i~~v~EG~E~~eFW~~LGg 367 (603)
..++++..++|+++||||||++..||+|+|++|+..||..|+++|..+.+..+ +..+|.+|+||.|+.+||..|||
T Consensus 13 ~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 13 VPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 34678889999999999999999999999999999999999999988887665 55789999999999999999987
No 15
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.56 E-value=1.9e-14 Score=140.19 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=80.5
Q ss_pred cCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHhc
Q 007450 164 FKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAAR 242 (603)
Q Consensus 164 ~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~-g~sl~eA~~~Vr~~R 242 (603)
...++.+.++|+.|+..+++ ..+++++++|++++.+|++|+|||.+|+||||||++||||.++ ++..++|+..++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 35678899999999999988 8899999999999999999999999999999999999999995 567777788888888
Q ss_pred CccccCchhHHHHHHHhhhh
Q 007450 243 GVTNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 243 P~i~PN~~F~~QL~~~Ek~l 262 (603)
+. ++....+++..++...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 76 5555555555555443
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.40 E-value=6.2e-13 Score=127.10 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCeEECChhh----------hCCHHHHHHCCCcEEEEcccCC------CCC----ccCCCcEEEEEEccCCCCCchHHHH
Q 007450 128 DHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFV------CPE----YFKGDLVYKTLWLQDSPSEDITSIL 187 (603)
Q Consensus 128 p~LyLGs~~~----------a~d~~~Lk~~GIt~ILNl~~e~------~p~----~~~~~i~yl~ipI~D~~~~dl~~~l 187 (603)
..|.+...+- ..|++.|+..||+.||.++... .+. +-..++.++|+||.|...+++.. +
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-A 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-H
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-H
Confidence 4566655554 4677899999999999986421 121 12358999999999999888754 4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHH
Q 007450 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (603)
Q Consensus 188 ~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~-g~sl~eA~ 235 (603)
.++++.|...+++|++|+|||++|+|||++|++++|+... ++++++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4678889999999999999999999999999999988764 58999986
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=5.5e-14 Score=154.69 Aligned_cols=145 Identities=17% Similarity=0.286 Sum_probs=113.3
Q ss_pred CccceeeeecCC-CCCCCccccccccCCCcccccCCCCeEEEecCC-------eeEEEeCCCCChhhhHHHHHHHHHHHH
Q 007450 270 NSMLRIYRIAPH-SSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS-------AIYVWIGKNCSVMMSNRAREAANQVIR 341 (603)
Q Consensus 270 ~sv~RLYRV~g~-s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~-------~IYvW~Gk~~s~~Er~~A~~~A~~l~~ 341 (603)
...+.+|+++.+ +...++.| ++.+.+..|||..||||..|. .+|+|.|+.|++.|+. +|..+..
T Consensus 1038 ~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~----~a~d~~~ 1109 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHE----FASDLVV 1109 (1255)
T ss_pred CCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHH----HHHHhcC
Confidence 455679999876 44556666 999999999999999998663 4999999999995444 4433332
Q ss_pred H-hhcCCceEEecCCCChhhhHHhcCCCccCCCCCccccccCCceeeEeeeCCccE-EEecccCCCcCCCChhhHhhhhc
Q 007450 342 Y-EKAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATL-MQDGAGEIDEYDLDFELFHKALD 419 (603)
Q Consensus 342 ~-~~~~~~i~~v~EG~E~~eFW~~LGgk~~y~~~~~~~~~~~~prLf~~Sd~sG~~-v~e~~~~~~Q~DLd~~~v~~a~~ 419 (603)
. ......++++.||+|+.+||..+||+++|..+.. .....|||+|+|.+|+| +.+...+|+||||++++++-
T Consensus 1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~--- 1183 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMI--- 1183 (1255)
T ss_pred ccccchhhhhccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhh---
Confidence 2 1233457789999999999999999999987543 23478999999999999 77888899999999998874
Q ss_pred CCCCCCeeecCCCCceee
Q 007450 420 GGVVPPFSVSNAGSETCV 437 (603)
Q Consensus 420 gg~~p~~~~~~~~~e~~l 437 (603)
.||+.+|++
T Consensus 1184 ---------ldng~~v~~ 1192 (1255)
T KOG0444|consen 1184 ---------LDNGDAVFL 1192 (1255)
T ss_pred ---------hcccceeee
Confidence 466666655
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=3.4e-13 Score=148.56 Aligned_cols=142 Identities=22% Similarity=0.341 Sum_probs=113.2
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHHHHhh-cCC
Q 007450 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQG 347 (603)
Q Consensus 269 p~sv~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~-~~~ 347 (603)
+..++||||+.++... |.---|+++..||++|.||+||.|..||+|.|.++......+|+.+|++|.+.++ +++
T Consensus 618 ~~h~TRlYrv~~~g~~-----i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~ 692 (1255)
T KOG0444|consen 618 PAHLTRLYRVGVNGTA-----IELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKS 692 (1255)
T ss_pred hHHhhhhheeccccce-----eEeeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCce
Confidence 4467999999876422 1112456788999999999999999999999999998888999999999998877 788
Q ss_pred ceEEecCCCChhhhHHhcCCCccCCCCC-----ccccccCCceeeEeeeCCccE----EEe-cccCCCcCCCChhhHh
Q 007450 348 QITSIKEGEEPLEFWDALVRGQFFADGC-----NKEEVKNEQVSFSGSNKIATL----MQD-GAGEIDEYDLDFELFH 415 (603)
Q Consensus 348 ~i~~v~EG~E~~eFW~~LGgk~~y~~~~-----~~~~~~~~prLf~~Sd~sG~~----v~e-~~~~~~Q~DLd~~~v~ 415 (603)
+|+.+.+|+|+.|||++|||.+..++.. .++-....||||++.-.-|++ |+. -.+.+.|+.|+.-.||
T Consensus 693 EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~Vy 770 (1255)
T KOG0444|consen 693 EIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVY 770 (1255)
T ss_pred eeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEE
Confidence 9999999999999999999987765533 122356799999999989998 322 2356778877776554
No 19
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.30 E-value=5.3e-12 Score=121.53 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=77.1
Q ss_pred ccccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCc---c--CCCcEEEEEEccCCCCC--c-hHHHHHHH
Q 007450 119 FDKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY---F--KGDLVYKTLWLQDSPSE--D-ITSILYDV 190 (603)
Q Consensus 119 ~~~~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~~---~--~~~i~yl~ipI~D~~~~--d-l~~~l~~a 190 (603)
.+.+..+|.++||-|+++.+.++.+|+++||+.||+|..+..+.. + ..++.+.++++...... . ....+.++
T Consensus 3 pP~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~a 82 (164)
T PF03162_consen 3 PPLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEA 82 (164)
T ss_dssp --TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHH
T ss_pred CCccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHH
Confidence 356678899999999999999999999999999999987643322 1 46899999998754331 1 12345556
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 007450 191 FDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (603)
Q Consensus 191 v~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~ 240 (603)
++.|.+. .+.+|||||..|..||++|+++|- +.+||++..|++..+.
T Consensus 83 L~~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 83 LEIILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHHHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHHHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 6655443 457999999999999999999998 7789999999998886
No 20
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.30 E-value=2.3e-12 Score=107.01 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=63.1
Q ss_pred cCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHH-HHhhcCCceEEecCCCChhhhH
Q 007450 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (603)
Q Consensus 294 ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~-~~~~~~~~i~~v~EG~E~~eFW 362 (603)
+++.+..+|+++||||||++..||+|+|++|+..|+..|...|+.+. ......+.+.++.||+|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 67889999999999999999999999999999999999999999998 5445677888889999999998
No 21
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.24 E-value=1.2e-10 Score=108.58 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=85.6
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 007450 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (603)
Q Consensus 123 ~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~----p~~-------~~~~i~yl~ipI~D~~~~dl~~~l~~av 191 (603)
+.+|.+.+|+++.....+++.|+++||+.|||+....+ |.. ...++.|+++|+..... +. ..+....
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HHHHHHH
Confidence 45799999999999999999999999999999975321 211 12588999999875322 11 1122222
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccc
Q 007450 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (603)
Q Consensus 192 ~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~ 246 (603)
++++ ...++||+||++|. |++++.+.++.. .|++.+++++..+..--.+.
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 2232 34689999999999 998877666655 79999999999988765443
No 22
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.12 E-value=1.4e-10 Score=128.40 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=118.5
Q ss_pred ccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCC--eeEEEeCCCCChhhhHHHHHHHHHHHHHhh---c
Q 007450 271 SMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYEK---A 345 (603)
Q Consensus 271 sv~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~--~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~---~ 345 (603)
...|+|.|.|..+..+... +|.+..++|.|+-.||+..++ .+|+|+|.++-...+..+..+|+.+++..- .
T Consensus 643 ~~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~ 718 (919)
T KOG0445|consen 643 EEERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSS 718 (919)
T ss_pred chhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccc
Confidence 4568999999876655544 899999999999999998775 599999999999999999999988887643 3
Q ss_pred CCceEEecCCCChhhhHHhcCCCccCCCCCccccccCCceeeEeeeCCccEEEeccc-CCCcCCCChhhHhhhhcCCCCC
Q 007450 346 QGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAG-EIDEYDLDFELFHKALDGGVVP 424 (603)
Q Consensus 346 ~~~i~~v~EG~E~~eFW~~LGgk~~y~~~~~~~~~~~~prLf~~Sd~sG~~v~e~~~-~~~Q~DLd~~~v~~a~~gg~~p 424 (603)
...++.|+||.++..||++||.|. ..+.+|||..|... +.+-.+ .-++ ++|.|+.||.+
T Consensus 719 ~~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~q---a~els~p~rc~----~pFsQ~~Ly~a--- 778 (919)
T KOG0445|consen 719 KVTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQ---ATELSYPARCP----MPFSQEDLYSA--- 778 (919)
T ss_pred cceeEeecCCCCchhhhhhccccc----------ccccceeeeccchh---hhhccCcccCC----CcccHHHHhhh---
Confidence 356789999999999999999765 45689999987654 112121 1233 77777777777
Q ss_pred CeeecCCCCceeecCcccchhhhhh
Q 007450 425 PFSVSNAGSETCVPARESGWCRLRR 449 (603)
Q Consensus 425 ~~~~~~~~~e~~l~~~~~~~~~~~~ 449 (603)
||.|||+|+||=- |..-|+
T Consensus 779 --fLvD~gdelwLW~----w~s~r~ 797 (919)
T KOG0445|consen 779 --FLVDNGDELWLWQ----WASDRK 797 (919)
T ss_pred --eeeccCCeeEeeh----hhhHHH
Confidence 9999999999965 877765
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.02 E-value=3.7e-09 Score=97.34 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=83.0
Q ss_pred CHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH--HhcCCeEEEEcCCCCchH
Q 007450 140 NRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV--REQGGRVFVHCCQGVSRS 215 (603)
Q Consensus 140 d~~~Lk~~GIt~ILNl~~e~~p~--~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a--~~~ggkVLVHC~aGiSRS 215 (603)
-.+.|+++|++.||-+|+..... .-..+|..+..++.|...+.- +..++-+..+... ..-|..|.|||.+|+||.
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra 111 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA 111 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc
Confidence 35789999999999998644322 124678888888887654432 3333333333222 235789999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHH
Q 007450 216 TSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLC 258 (603)
Q Consensus 216 aaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~ 258 (603)
+.+++.-|+.. ||.+++|+++||++|..+ .|..++..|..|
T Consensus 112 pvlvalalie~-gmkyedave~ir~krrga-~n~kql~~leky 152 (173)
T KOG2836|consen 112 PVLVALALIEA-GMKYEDAVEMIRQKRRGA-INSKQLLYLEKY 152 (173)
T ss_pred hHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHHHHHHHHHh
Confidence 99998888865 999999999999999875 565555555544
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.94 E-value=5.9e-09 Score=90.22 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.9
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 007450 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (603)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~---~ggkVLVHC~aGiSRSaaVviAYLM~~~------g~sl~eA~~~Vr 239 (603)
.++...+.|...++....+.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444455556666655543 3689999999999999999999998763 268889999999
Q ss_pred HhcCccccCchhHHHH
Q 007450 240 AARGVTNPNMGFACQL 255 (603)
Q Consensus 240 ~~RP~i~PN~~F~~QL 255 (603)
..|+....+......+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00012 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999877766555444
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.94 E-value=5.9e-09 Score=90.22 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.9
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 007450 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (603)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~---~ggkVLVHC~aGiSRSaaVviAYLM~~~------g~sl~eA~~~Vr 239 (603)
.++...+.|...++....+.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444455556666655543 3689999999999999999999998763 268889999999
Q ss_pred HhcCccccCchhHHHH
Q 007450 240 AARGVTNPNMGFACQL 255 (603)
Q Consensus 240 ~~RP~i~PN~~F~~QL 255 (603)
..|+....+......+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00404 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999877766555444
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.84 E-value=1.2e-08 Score=92.09 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=54.0
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC-C---Cc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 007450 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (603)
Q Consensus 123 ~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~-p---~~-------~~~~i~yl~ipI~D~~~~dl~~~l~~av 191 (603)
+.+|.+.+|+++++...+++.|++.||++|||+....+ + .. -..++.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 57899999999999999999999999999999974321 1 11 1358999999997432 21 12233
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 007450 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (603)
Q Consensus 192 ~fI~~a~~~ggkVLVHC~aGiSRSaaVvi 220 (603)
.|.+......++||+||+.|. |+.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 333333334689999999999 9866543
No 27
>PLN02727 NAD kinase
Probab=98.70 E-value=6.6e-08 Score=112.29 Aligned_cols=99 Identities=11% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC--Ccc--------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 007450 128 DHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (603)
Q Consensus 128 p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p--~~~--------~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a 197 (603)
-.+|+++++.+.+++.|.++||++|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 261 ~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~- 338 (986)
T PLN02727 261 AAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD- 338 (986)
T ss_pred eeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh-
Confidence 3589999999999999999999999999765431 121 2579999999976554443 445555555533
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
...++||+||+.|..|+++++++||....+.
T Consensus 339 -slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 339 -SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred -hcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 3468999999999999999999999977654
No 28
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=89.44 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=81.7
Q ss_pred HHHHHHCCCcEEEEcccCCCCCccCCCc---EEEEEEccCCCC------CchHHHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 007450 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSPS------EDITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (603)
Q Consensus 141 ~~~Lk~~GIt~ILNl~~e~~p~~~~~~i---~yl~ipI~D~~~------~dl~~~l~~av~fI~~a~~~ggkVLVHC~aG 211 (603)
.++..+.|-+++|++.........+..+ .++.+.+.|... ..-..+...+++|+++.-+. .++||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 4556778999999987532111112111 345555554322 22236788999999988765 8999999999
Q ss_pred CchHHHHH-HHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHH
Q 007450 212 VSRSTSLV-IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (603)
Q Consensus 212 iSRSaaVv-iAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~Q 254 (603)
+|||.+++ +|-|.....++-.++.+.+|..+|.+.||+..+.-
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 99997765 44566777999999999999999999999986644
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.57 E-value=2.1e-07 Score=93.30 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=59.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHh--cCCeEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHhcCcccc
Q 007450 175 LQDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNP 247 (603)
Q Consensus 175 I~D~~~~dl~~~l~~av~fI~~a~~--~ggkVLVHC~aGiSRSaaVviAYLM~~~-----g~sl~eA~~~Vr~~RP~i~P 247 (603)
+.|...++-...+.+.+..+++... .+++|+|||.+|+||||++++++++... .+++.+|+..||+.|+.+-.
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 3454444433344444444544432 3689999999999999999999987553 58999999999999998877
Q ss_pred CchhHHHHH
Q 007450 248 NMGFACQLL 256 (603)
Q Consensus 248 N~~F~~QL~ 256 (603)
+..+...+.
T Consensus 218 ~~~Qy~f~~ 226 (231)
T cd00047 218 TEEQYIFLY 226 (231)
T ss_pred CHHHHHHHH
Confidence 766555543
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.49 E-value=4.8e-07 Score=92.46 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=58.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccC
Q 007450 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (603)
Q Consensus 175 I~D~~~~dl~~~l~~av~fI~~a~~~-ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN 248 (603)
+.|...+.-...+-+.+..++..... +++|+|||.+|+||||++++++++.. ...++.++++.||..|+.+-.+
T Consensus 166 W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~ 245 (258)
T smart00194 166 WPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQT 245 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCC
Confidence 34544442223333444444444332 68999999999999999999987743 3689999999999999988877
Q ss_pred chhHHHHH
Q 007450 249 MGFACQLL 256 (603)
Q Consensus 249 ~~F~~QL~ 256 (603)
..+...+.
T Consensus 246 ~~Qy~f~~ 253 (258)
T smart00194 246 EEQYIFLY 253 (258)
T ss_pred HHHHHHHH
Confidence 76665553
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.35 E-value=1.8e-06 Score=82.61 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred ccC-CeEECChhh---hCCHHHHHHCCCcEEEEcccCC----CCCccCCCcEEEEEEccCCCCCc---hHH---------
Q 007450 126 IAD-HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---ITS--------- 185 (603)
Q Consensus 126 I~p-~LyLGs~~~---a~d~~~Lk~~GIt~ILNl~~e~----~p~~~~~~i~yl~ipI~D~~~~d---l~~--------- 185 (603)
|.+ .||-++... ..+.+.|.++||++||+|.... .|.....++.++++|+.+..... +..
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 434 488887544 4678899999999999996422 24445568999999997544331 110
Q ss_pred -HH------------HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 007450 186 -IL------------YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (603)
Q Consensus 186 -~l------------~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~ 236 (603)
.+ ....++++-.....++|||||.+|..|+|.+++ .|+...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~a-lll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAA-LLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHH-HHHHHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHH-HHHHHcCCCHHHHHH
Confidence 00 111112222333447999999999999977554 445566999877665
No 32
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.27 E-value=5.9e-06 Score=83.12 Aligned_cols=120 Identities=13% Similarity=0.190 Sum_probs=90.6
Q ss_pred ccccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCC------CCCch-HHH
Q 007450 119 FDKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDS------PSEDI-TSI 186 (603)
Q Consensus 119 ~~~~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~----~~-~~~i~yl~ipI~D~------~~~dl-~~~ 186 (603)
.+.+.+.|.++||-++++...++.+|+.++++.||.++.+..|+ ++ ..+|.+.++.+.-. +..++ ...
T Consensus 56 pPlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~ 135 (249)
T KOG1572|consen 56 PPLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHS 135 (249)
T ss_pred CCccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHH
Confidence 45667889999999999999999999999999999998775443 12 35788999988632 22333 334
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 007450 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (603)
Q Consensus 187 l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~ 241 (603)
+..+++++-+ +.+.++||||..|..|+++|+.+.- +.++|++.-.++.-+..
T Consensus 136 i~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 136 IRKALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 5566666332 4568999999999999999887765 77799988877755443
No 33
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.24 E-value=1.5e-06 Score=97.06 Aligned_cols=101 Identities=16% Similarity=0.330 Sum_probs=79.8
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhhHHHHHHHHHHHHHhhcCC-
Q 007450 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQG- 347 (603)
Q Consensus 269 p~sv~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~~~~- 347 (603)
|-....|.+|+|....+ ...|.+..++||++|||||..+..+|.|.|.-+|..|+.+|.+++..|+....-.|
T Consensus 220 Pyk~vMLlqVkGr~hVq------tRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRHVQ------TRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEcccccce------eEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 34456789999976543 34788999999999999999999999999999999999999999988886544333
Q ss_pred --ceEEecCCC----ChhhhHHhcCCCccCCCCC
Q 007450 348 --QITSIKEGE----EPLEFWDALVRGQFFADGC 375 (603)
Q Consensus 348 --~i~~v~EG~----E~~eFW~~LGgk~~y~~~~ 375 (603)
.|+.|.+-. ....||+.|||...|+...
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~~g 327 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQSAG 327 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhhcC
Confidence 344555533 1468999999988887654
No 34
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.23 E-value=4.7e-06 Score=92.08 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=64.1
Q ss_pred EccCCCCCchHHHHHHHHHHHHHHHhcC---------CeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHhcC
Q 007450 174 WLQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARG 243 (603)
Q Consensus 174 pI~D~~~~dl~~~l~~av~fI~~a~~~g---------gkVLVHC~aGiSRSaaVviAYLM~~~-g~sl~eA~~~Vr~~RP 243 (603)
.+.|+..++-...+.+.++.++.....+ ..++|||.+|+||||+++++|+|+.. ..++++.+..+|..|+
T Consensus 430 nWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRn 509 (535)
T PRK15375 430 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRN 509 (535)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCC
Confidence 3466654443333445555555442221 23479999999999999999999865 4799999999999999
Q ss_pred c-cccCchhHHHHHHHhhhh
Q 007450 244 V-TNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 244 ~-i~PN~~F~~QL~~~Ek~l 262 (603)
. +--...++..|.+.+..+
T Consensus 510 g~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 510 NRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 7 667777788887777665
No 35
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=2.4e-05 Score=71.18 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=76.3
Q ss_pred cceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHH
Q 007450 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDV 190 (603)
Q Consensus 122 ~~s~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~----p~~-------~~~~i~yl~ipI~D~~~~dl~~~l~~a 190 (603)
.+.+|.+.|+|+++....|+..++.+|++.|||.....+ |.. -..++.|.++|+.-..... +.
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~------~d 75 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE------AD 75 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH------HH
Confidence 467899999999999999999999999999999753211 111 0247889999997432221 12
Q ss_pred HHHHHHH-HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 007450 191 FDYFEDV-REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (603)
Q Consensus 191 v~fI~~a-~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~ 241 (603)
++-+.++ -+.+++||.||+.|- ||.++=.--. ...||+.+++.++-+.+
T Consensus 76 V~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 76 VEAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 2223333 345799999999997 7744322222 34589999888776543
No 36
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.07 E-value=2.7e-05 Score=86.09 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=99.3
Q ss_pred eeccCCeEECChhhhCCH----HHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCC--CCCchHHHHHHHHHHHHH
Q 007450 124 SRIADHIYLGSDAVAKNR----GILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDS--PSEDITSILYDVFDYFED 196 (603)
Q Consensus 124 s~I~p~LyLGs~~~a~d~----~~Lk~~GIt~ILNl~~e~~p-~~~~~~i~yl~ipI~D~--~~~dl~~~l~~av~fI~~ 196 (603)
..++++||+|........ ..-....+..||+|...... ........++++++... ...++...|++++.|+..
T Consensus 290 ~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~ 369 (451)
T PF04179_consen 290 DPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRS 369 (451)
T ss_pred ccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 346789999986652111 11234568899998654322 33456778899998753 445788899999999999
Q ss_pred HHhc--CCeEEEEcCCCCchHHHHHHHHHHhhcCC--C--------------HHHHHHHHHHhcCccccCchhHHHHHHH
Q 007450 197 VREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQ--S--------------FEDAFQYVKAARGVTNPNMGFACQLLLC 258 (603)
Q Consensus 197 a~~~--ggkVLVHC~aGiSRSaaVviAYLM~~~g~--s--------------l~eA~~~Vr~~RP~i~PN~~F~~QL~~~ 258 (603)
.+.+ +.+|||||..|...|++|++|.|++.++. . ..+-+.+|-+.+|.++|..+.+++...|
T Consensus 370 ~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 370 HLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9888 89999999999999999999999998643 1 2244566666778888888887776554
No 37
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.02 E-value=4.2e-05 Score=84.21 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=78.4
Q ss_pred cEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc--CCeEEEEcCCCCchHHHHHHHHHHhhc
Q 007450 150 THVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWRE 227 (603)
Q Consensus 150 t~ILNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~--ggkVLVHC~aGiSRSaaVviAYLM~~~ 227 (603)
=.|.||+++.....-.-.-....+++.|...+.+ +.+..+++-++..+.+ ..-|.|||.+|++|+|++++||||...
T Consensus 55 y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~ 133 (434)
T KOG2283|consen 55 YKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPL-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSG 133 (434)
T ss_pred eEEEecCccccCCccccccceeecCCCCCCCCcH-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhh
Confidence 3477877532211111122345678888888887 6677788888887764 478899999999999999999999987
Q ss_pred CCC-HHHHHHHHHHhc---C--ccccCchhHHHHHHHhhhh
Q 007450 228 GQS-FEDAFQYVKAAR---G--VTNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 228 g~s-l~eA~~~Vr~~R---P--~i~PN~~F~~QL~~~Ek~l 262 (603)
-.. +++|+++.-.+| . ...--+...+.+.-|+..+
T Consensus 134 ~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 134 ISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred hcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHh
Confidence 654 999999999999 2 1223345566666665533
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.97 E-value=3.6e-05 Score=76.26 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchhHHHHH
Q 007450 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (603)
Q Consensus 188 ~~av~fI~~a~~----~ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~ 256 (603)
..++++++...+ .+++|+|||..|.|||++++++.+|.. ...++.++++.||+.|+.+-.+..+...+.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 344455554443 349999999999999999999987764 247999999999999998888776655554
No 39
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.80 E-value=0.0001 Score=77.84 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchhH
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFA 252 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F~ 252 (603)
.++|+|||.+|+||||++++...+.. ...++.+++..+|+.|+..-.+..+.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 37999999999999999988775543 24688999999999999766655433
No 40
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.78 E-value=4.8e-05 Score=72.27 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=44.1
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHh
Q 007450 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (603)
Q Consensus 165 ~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM~ 225 (603)
..++.|++||+.|...++ ...|+..++++... .++.-+.+||.+|.||+.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999986655 37788889999888 668999999999999999988888764
No 41
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.75 E-value=0.00011 Score=77.97 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=43.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchhHHHH
Q 007450 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (603)
Q Consensus 202 gkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL 255 (603)
++|+|||.+|+||||++++..++.. ...+..+++..+|..|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 6999999999999999998875433 35899999999999999877765544443
No 42
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.72 E-value=0.00013 Score=77.66 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=42.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchhHHH
Q 007450 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (603)
Q Consensus 202 gkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F~~Q 254 (603)
++|+|||.+|+||||++|+...+.. ..+++.+++..+|..|+..-.+..+...
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F 305 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAF 305 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHH
Confidence 7999999999999999998655432 3589999999999999987666544433
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.70 E-value=0.00018 Score=75.85 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchh
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F 251 (603)
.++|+|||.+|+||||++++...+.. ...++.+++..+|+.|+..-.+..+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~Q 276 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDD 276 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHH
Confidence 47999999999999999988775543 3579999999999999976665543
No 44
>PHA02738 hypothetical protein; Provisional
Probab=97.60 E-value=0.00026 Score=75.34 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCchhHHH
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN~~F~~Q 254 (603)
.++|+|||.+|+||||++++.-++.. ...++.+++..||+.|+..-.+..+...
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 36899999999999999887664332 3578999999999999977666554433
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.51 E-value=0.00014 Score=74.80 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=74.4
Q ss_pred cCCeEECChhhhCCHH--HHHHCCCcEEEEcccCCC--CCccCCCc----EEEEEEccCCCCCchH-HHHHHHHHHHHHH
Q 007450 127 ADHIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVC--PEYFKGDL----VYKTLWLQDSPSEDIT-SILYDVFDYFEDV 197 (603)
Q Consensus 127 ~p~LyLGs~~~a~d~~--~Lk~~GIt~ILNl~~e~~--p~~~~~~i----~yl~ipI~D~~~~dl~-~~l~~av~fI~~a 197 (603)
...+|.++.+...+.. .....+|..++++.++.. -..+.... ....+...+....... ...+....++.-.
T Consensus 52 ~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~ 131 (249)
T COG2365 52 PIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLL 131 (249)
T ss_pred ceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHH
Confidence 3446777766665544 667788888888764111 01111111 1111222222211111 1233444455555
Q ss_pred HhcC-CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCc
Q 007450 198 REQG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (603)
Q Consensus 198 ~~~g-gkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~ 249 (603)
+.++ ++||+||.+|..|+|.+++.|++...+..-..+-++++..++......
T Consensus 132 ~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 132 ADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 5554 999999999999999999999999977777788888888877654444
No 46
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.37 E-value=0.00041 Score=75.16 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=78.5
Q ss_pred CCcEEEEcccCC----CCCccCCCcEEEEEEccC---CCCCchHHH-HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHH
Q 007450 148 GITHVLNCVGFV----CPEYFKGDLVYKTLWLQD---SPSEDITSI-LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (603)
Q Consensus 148 GIt~ILNl~~e~----~p~~~~~~i~yl~ipI~D---~~~~dl~~~-l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVv 219 (603)
.|.-+|+++... .+.....++.|+.+...- .+....... ...+-.|+.+....+.=|+|||.+|++|++-++
T Consensus 63 ~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI 142 (393)
T KOG2386|consen 63 KVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLI 142 (393)
T ss_pred eEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceee
Confidence 355677765421 122334566676665532 222222233 444555667677788999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhcCccccCchhHHHHHHHhhhh
Q 007450 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 220 iAYLM~~~g~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l 262 (603)
++|||...+++..+|++.+...|+-..-.......|...+...
T Consensus 143 ~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 143 CAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred eeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 9999999999999999999999985544455555665444433
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.00054 Score=80.80 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=58.1
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccC
Q 007450 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (603)
Q Consensus 175 I~D~~~~dl~~~l~~av~fI~~a~~~-ggkVLVHC~aGiSRSaaVviAYLM~~-----~g~sl~eA~~~Vr~~RP~i~PN 248 (603)
+.|++.++-.+.|-+-++.|..+++. +-+|+|||.+|+||||+++++=+|.. +.+..-+.++.+|.+|-.+-+.
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 34655555445555555666666665 56999999999999999886654443 3678889999999999987777
Q ss_pred chhHHH
Q 007450 249 MGFACQ 254 (603)
Q Consensus 249 ~~F~~Q 254 (603)
..+...
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 664443
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.83 E-value=0.0026 Score=65.44 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=49.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHH---hcCCeEEEEcCCCCchHHHHHHHH-HHhhcCCC-------------HHHHHHH
Q 007450 175 LQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAY-LMWREGQS-------------FEDAFQY 237 (603)
Q Consensus 175 I~D~~~~dl~~~l~~av~fI~~a~---~~ggkVLVHC~aGiSRSaaVviAY-LM~~~g~s-------------l~eA~~~ 237 (603)
+.|...+++. +..++++-.. -++++++|||.||+||+|++++.- ||....-+ ..+.+..
T Consensus 193 W~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 4576666553 3445555444 256999999999999999988766 44432221 2355667
Q ss_pred HHHhcCccccCchhHHHHH
Q 007450 238 VKAARGVTNPNMGFACQLL 256 (603)
Q Consensus 238 Vr~~RP~i~PN~~F~~QL~ 256 (603)
+|++|-...-|..++..|.
T Consensus 269 LRsQRmkmVQn~~Qf~flY 287 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFLY 287 (302)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 7888765555544444443
No 49
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.79 E-value=0.0018 Score=70.35 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=50.0
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHH------hcCCeEEEEcCCCCchHHHHH-HHHHHh---hc----CCCHHHH
Q 007450 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVR------EQGGRVFVHCCQGVSRSTSLV-IAYLMW---RE----GQSFEDA 234 (603)
Q Consensus 169 ~yl~ipI~D~~~~dl~~~l~~av~fI~~a~------~~ggkVLVHC~aGiSRSaaVv-iAYLM~---~~----g~sl~eA 234 (603)
.|+.+-+.|++.+.-. ..+++|+++.- ..-|+|.|||.+|+||+++++ |-.||- +. .++....
T Consensus 416 ~yh~~tWPDHGvP~dP---g~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~kt 492 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDP---GGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKT 492 (600)
T ss_pred hhheeecccCCCcCCc---cHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHH
Confidence 4555556666543210 12445555432 234799999999999999975 334443 22 4688999
Q ss_pred HHHHHHhcCccccCc
Q 007450 235 FQYVKAARGVTNPNM 249 (603)
Q Consensus 235 ~~~Vr~~RP~i~PN~ 249 (603)
+++||..|....-..
T Consensus 493 IqmVRsqRSGmVQTE 507 (600)
T KOG0790|consen 493 IQMVRSQRSGMVQTE 507 (600)
T ss_pred HHHHHHHhcchhhhH
Confidence 999999998554333
No 50
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.52 E-value=0.0074 Score=65.57 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=39.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH-HHhh--c---CCCHHHHHHHHHHhcCccccCchhH
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAY-LMWR--E---GQSFEDAFQYVKAARGVTNPNMGFA 252 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAY-LM~~--~---g~sl~eA~~~Vr~~RP~i~PN~~F~ 252 (603)
..+++.|||.+|+||++++++.. .|.. . .....+.+..+|..|+.+..+..+.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 45899999999999999999655 2222 2 2458888889999998766555544
No 51
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.76 E-value=0.033 Score=59.77 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-cC----CCHHHHHHHHHHhcCccccCchhHHHHHHHhhhh
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-EG----QSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~-~g----~sl~eA~~~Vr~~RP~i~PN~~F~~QL~~~Ek~l 262 (603)
.+.++|||.+|+||++|+++.--+.+ .+ .+.-..+-.+|..|+...++..+.-.|.++-...
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 68999999999999999887664433 22 3455667778888899889988887777654443
No 52
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.27 E-value=0.066 Score=61.35 Aligned_cols=69 Identities=13% Similarity=0.301 Sum_probs=47.7
Q ss_pred HHHHHh-cCCeEEEEcCCCCchHHHHHHHHHHh----h--cCCCHHHHHHHHHHhcCc-cccCchhHHHHHHHhhhh
Q 007450 194 FEDVRE-QGGRVFVHCCQGVSRSTSLVIAYLMW----R--EGQSFEDAFQYVKAARGV-TNPNMGFACQLLLCQKRV 262 (603)
Q Consensus 194 I~~a~~-~ggkVLVHC~aGiSRSaaVviAYLM~----~--~g~sl~eA~~~Vr~~RP~-i~PN~~F~~QL~~~Ek~l 262 (603)
++++.+ +..+|+|||..|-||+++-++-=|+. + ..++....++++|..||. +.-...|...|...-++.
T Consensus 919 VNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEV 995 (1004)
T KOG0793|consen 919 VNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEV 995 (1004)
T ss_pred hhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHH
Confidence 334433 34799999999999999865443322 1 246888889999999994 455666776676555544
No 53
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.062 Score=62.96 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=40.9
Q ss_pred cceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChh
Q 007450 272 MLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (603)
Q Consensus 272 v~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~ 327 (603)
.+||+-++.-...+....+...-|.++...|+.++||+|+.|.++|+|+|..++..
T Consensus 858 YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~ 913 (1007)
T KOG1984|consen 858 YPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPD 913 (1007)
T ss_pred ccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHH
Confidence 35566655443333332233336778888999999999999999999999999874
No 54
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.87 E-value=0.14 Score=48.46 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=54.3
Q ss_pred eccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc---C
Q 007450 125 RIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---G 201 (603)
Q Consensus 125 ~I~p~LyLGs~~~a~d~~~Lk~~GIt~ILNl~~e~~p~~~~~~i~yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~---g 201 (603)
-|.++||.+..... -++..=+|-+++-+ .+.|..+ ..|.+.-++ .++..-+..+++.++. .
T Consensus 3 ~i~drLyf~~~~~~-----p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 3 IIPDRLYFASLRNK-----PKSTPNTHYFSIDD---------ELVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp -SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------H-HHHHHHHHHHHHHHH-GGGT
T ss_pred CCCCcEEEEEeCCC-----CCCCCCcEEEEeCC---------eEEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhc
Confidence 36678888875542 22223345555322 2233322 357777777 4455555666666654 5
Q ss_pred CeEEEEcCCCCc--h--HHHHHHHHHHhhcCCCHHHHHHHHHHhc
Q 007450 202 GRVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (603)
Q Consensus 202 gkVLVHC~aGiS--R--SaaVviAYLM~~~g~sl~eA~~~Vr~~R 242 (603)
++.+|||...-. | ++.++.||+|..+||++++|++-+...-
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 788899877544 3 4788899999999999999999998774
No 55
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=91.85 E-value=0.41 Score=55.79 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=29.0
Q ss_pred CCcccccCCCCeEEEecCCeeEEEeCCCCChh
Q 007450 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (603)
Q Consensus 296 ~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~~ 327 (603)
..+.+.|+++++|+||++.+||+|+|+.|++.
T Consensus 737 NaT~s~le~~GlYLidtg~~iflw~g~d~~p~ 768 (861)
T COG5028 737 NATSSLLESGGLYLIDTGQKIFLWFGKDAVPS 768 (861)
T ss_pred hhhHHHHhcCCeEEEEcCCEEEEEecCCCCHH
Confidence 35677899999999999999999999999973
No 56
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.04 E-value=0.28 Score=59.17 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhc----CCeEEEEcCCCCchHHHHHHH-----HHHhhcCCCHHHHHHHHHHhcCcc
Q 007450 189 DVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIA-----YLMWREGQSFEDAFQYVKAARGVT 245 (603)
Q Consensus 189 ~av~fI~~a~~~----ggkVLVHC~aGiSRSaaVviA-----YLM~~~g~sl~eA~~~Vr~~RP~i 245 (603)
..+.|+.+...- .|+|+|||.+|+||+|+.++- .++.....+.-.-...+|.+|...
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 456677766643 399999999999999986532 223333467777777778877743
No 57
>PTZ00395 Sec24-related protein; Provisional
Probab=91.02 E-value=0.84 Score=56.37 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=30.0
Q ss_pred cCCCcccccCCCCeEEEecCCeeEEEeCCCCCh
Q 007450 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (603)
Q Consensus 294 ev~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~ 326 (603)
.+..+...|.++++|||+.|..||+|+|+.+++
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~P 1465 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDA 1465 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCH
Confidence 456777899999999999999999999999987
No 58
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.20 E-value=1.2 Score=50.77 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHH-HHHHHh
Q 007450 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV-IAYLMW 225 (603)
Q Consensus 187 l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVv-iAYLM~ 225 (603)
|..|+...++....+..|||||..|-.|++-++ +|-||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 444555555555677999999999999998876 455663
No 59
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=83.17 E-value=1.8 Score=52.61 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh----c-CCCHHHHHHHHHHhcCcc
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWR----E-GQSFEDAFQYVKAARGVT 245 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~----~-g~sl~eA~~~Vr~~RP~i 245 (603)
.+++.|||..|.+||++++++-++.. . -++.=+|.+.+|..||..
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 58999999999999998876654432 2 367778888888888864
No 60
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.51 E-value=1.2 Score=52.35 Aligned_cols=31 Identities=19% Similarity=0.550 Sum_probs=28.2
Q ss_pred CCcccccCCCCeEEEecCCeeEEEeCCCCCh
Q 007450 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (603)
Q Consensus 296 ~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~ 326 (603)
..+...|.+++.|++|+|..+|+|+|+.|.+
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 3466789999999999999999999999997
No 61
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=69.94 E-value=9.5 Score=41.48 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=16.6
Q ss_pred hcCCeEEEEcCCCCchHHHHH
Q 007450 199 EQGGRVFVHCCQGVSRSTSLV 219 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVv 219 (603)
.+|..|||||..|-.|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 688999999999999996654
No 62
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=68.84 E-value=9.1 Score=43.97 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=26.6
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCCCchHHHHH-HHHHHh
Q 007450 190 VFDYFEDVRE-QGGRVFVHCCQGVSRSTSLV-IAYLMW 225 (603)
Q Consensus 190 av~fI~~a~~-~ggkVLVHC~aGiSRSaaVv-iAYLM~ 225 (603)
+..+|.+++. +|..|||||..|..|+.-|+ +|=||.
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 3445666666 56999999999999997776 444553
No 63
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=68.55 E-value=14 Score=31.87 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=19.4
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
.++.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 4668999999988 48864 33344 444653
No 64
>PLN00162 transport protein sec23; Provisional
Probab=68.13 E-value=16 Score=43.81 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=47.6
Q ss_pred CCCcccccCCCCeEEEecCCeeEEEeCCCCCh-----------hh-----hHHHHHHHHHHHHHhhcCCceEEecCCCCh
Q 007450 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV-----------MM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (603)
Q Consensus 295 v~~~~sSLnS~DvFILd~g~~IYvW~Gk~~s~-----------~E-----r~~A~~~A~~l~~~~~~~~~i~~v~EG~E~ 358 (603)
+..+..+|.++.+|+||++..|+||.|..... .+ .+..++-|+.|...+.+..++.++++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 45677889999999999999999999953221 11 122233455566544466778889998876
Q ss_pred hhhHHh
Q 007450 359 LEFWDA 364 (603)
Q Consensus 359 ~eFW~~ 364 (603)
.-|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 666443
No 65
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=62.51 E-value=17 Score=31.24 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=38.7
Q ss_pred HHHHCCCcEEEEcccCCCCCccC-CCcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 007450 143 ILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (603)
Q Consensus 143 ~Lk~~GIt~ILNl~~e~~p~~~~-~~i~-yl~ipI~D~~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVvi 220 (603)
.+...+-..||++... .++.. .-.. ..++|+.+....... .. ..++++|+|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~~---------~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAENL---------LE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhcc---------cc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3444556788887543 22211 1122 566666654332110 00 567899999999998 77 4455
Q ss_pred HHHHhh
Q 007450 221 AYLMWR 226 (603)
Q Consensus 221 AYLM~~ 226 (603)
.+|...
T Consensus 79 ~~L~~~ 84 (110)
T COG0607 79 AALKLA 84 (110)
T ss_pred HHHHHc
Confidence 565544
No 66
>PLN02160 thiosulfate sulfurtransferase
Probab=55.94 E-value=17 Score=33.90 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=19.9
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
+..+.+|+|||..|. ||... +.++...|.+
T Consensus 78 ~~~~~~IivyC~sG~-RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHH--HHHHHHcCCC
Confidence 356789999999994 88654 2333444654
No 67
>PRK01415 hypothetical protein; Validated
Probab=55.60 E-value=23 Score=36.80 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=20.7
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
..++++|+|+|+.|+ || ..++++|.. +|..
T Consensus 168 ~~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 168 LLKGKKIAMVCTGGI-RC-EKSTSLLKS-IGYD 197 (247)
T ss_pred hcCCCeEEEECCCCh-HH-HHHHHHHHH-cCCC
Confidence 346789999999996 87 445566643 3543
No 68
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=53.83 E-value=25 Score=30.84 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
++.+|+|||..|. ||.. ++. +++..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~-~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQ-SLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHH-HHHHCCC
Confidence 4579999999997 7733 333 3445565
No 69
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=52.91 E-value=1.2e+02 Score=33.03 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=40.0
Q ss_pred cCCCCeEEEecCC------eeEEEeCCCCChhhhHHHHHHHHHHHHHhhcCCceEEecCCC------ChhhhHHhcCC
Q 007450 302 FDTRGAFIVLVPS------AIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQITSIKEGE------EPLEFWDALVR 367 (603)
Q Consensus 302 LnS~DvFILd~g~------~IYvW~Gk~~s~~Er~~A~~~A~~l~~~~~~~~~i~~v~EG~------E~~eFW~~LGg 367 (603)
|...+.-|||... ..|.+.|- ..+..+..+..++..+.+... ...|.+-+|+. =|..||+.+-.
T Consensus 161 L~~~~~~vlDlE~~aehrGS~fG~~~~-~qpsQ~~Fe~~l~~~l~~~~~-~~~i~vE~Es~~IG~~~lP~~l~~~m~~ 236 (345)
T PRK11784 161 LANAGAQVLDLEGLANHRGSSFGRLGG-PQPSQKDFENLLAEALLKLDP-ARPIVVEDESRRIGRVHLPEALYEAMQQ 236 (345)
T ss_pred HHhcCCeEEECCchhhhccccccCCCC-CCcchHHHHHHHHHHHHcCCC-CCeEEEEeccccccCccCCHHHHHHHhh
Confidence 4444556777543 36777776 345556677777777776443 34565666655 38899998753
No 70
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=46.80 E-value=74 Score=27.06 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=40.7
Q ss_pred HCCCcEEEEcccCCCCCccCCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH-
Q 007450 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (603)
Q Consensus 146 ~~GIt~ILNl~~e~~p~~~~~~i-~yl~ipI~D~---~~~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVvi- 220 (603)
..+=..||++.... ++....+ .-.++|+... ...-....+..........+.++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 34556788875321 1111111 1366776432 2222223344444444444466789999997766 4433332
Q ss_pred --HHHHhhcCCC
Q 007450 221 --AYLMWREGQS 230 (603)
Q Consensus 221 --AYLM~~~g~s 230 (603)
+|++...|++
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3445555654
No 71
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=45.46 E-value=30 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 007450 215 STSLVIAYLMWREGQSFEDAFQYVKAA 241 (603)
Q Consensus 215 SaaVviAYLM~~~g~sl~eA~~~Vr~~ 241 (603)
...-+.+.||..+|++.++|+++++..
T Consensus 14 ~I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 14 VIEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 345577889999999999999999875
No 72
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=44.52 E-value=35 Score=30.33 Aligned_cols=31 Identities=16% Similarity=-0.064 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
+..+.+|+|+|..| ++.++.++.+| +..|++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 34578999999998 55555554444 444654
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=41.64 E-value=25 Score=27.56 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHH
Q 007450 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (603)
Q Consensus 205 LVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~V 238 (603)
..||.+ -++.+- +|.++|+.+|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 58888999999999999875
No 74
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=41.52 E-value=54 Score=28.17 Aligned_cols=28 Identities=29% Similarity=0.601 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
++.+|+|+|..| .||... +.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 478999999998 477443 33444 35654
No 75
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=40.31 E-value=57 Score=32.57 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHH
Q 007450 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYL 223 (603)
Q Consensus 183 l~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYL 223 (603)
+.+.+.++++.|.+++.++++|+|. |.|+|++++..+-
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 3456788889999999999999987 8889988665443
No 76
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=39.67 E-value=34 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=19.0
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
..+++|+|+|..|. ||.. ++..| ...|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCce
Confidence 46789999999995 7743 33333 444653
No 77
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=38.94 E-value=51 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
++++|+|||..|+ ||. .+++||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 5689999999997 874 45566654 4653
No 78
>PRK05320 rhodanese superfamily protein; Provisional
Probab=38.86 E-value=55 Score=34.04 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
++++|+++|+.|+ ||.. ++++|.. .|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCCc
Confidence 5689999999996 7744 5666653 3543
No 79
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=38.54 E-value=39 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=15.4
Q ss_pred eEEEEcCCCCchHHHHH
Q 007450 203 RVFVHCCQGVSRSTSLV 219 (603)
Q Consensus 203 kVLVHC~aGiSRSaaVv 219 (603)
.|-|=|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68899999999999876
No 80
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=37.62 E-value=55 Score=29.74 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
+.++.+|+|+|..|-.||.. ++++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCC
Confidence 45678999999855457654 3377766675
No 81
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=37.43 E-value=37 Score=32.60 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.8
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
.++.+|+|+|..|..||.. ++++++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3678999999998878865 45555555654
No 82
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=35.53 E-value=51 Score=28.00 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
+..+|+|+|..|...++..++..| +..|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCcc
Confidence 367999999998644344444444 444543
No 83
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=33.98 E-value=44 Score=35.40 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHH----hcC---CeEEEEcCCCCchHHHHH
Q 007450 185 SILYDVFDYFEDVR----EQG---GRVFVHCCQGVSRSTSLV 219 (603)
Q Consensus 185 ~~l~~av~fI~~a~----~~g---gkVLVHC~aGiSRSaaVv 219 (603)
.++..+.++++.++ ++| -.|-|=|++|..||++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 44555555555433 333 348899999999999876
No 84
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=33.72 E-value=59 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=18.9
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
....+|+|+|..|. ||..++ .++...|..
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAA--EAAAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHH--HHHHHCCCC
Confidence 56789999999985 776532 333444543
No 85
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=31.97 E-value=1e+02 Score=31.04 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHH
Q 007450 180 SEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDA 234 (603)
Q Consensus 180 ~~dl~~~l~~av~fI~~a~~----~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA 234 (603)
.+++.+....+..++++.+. .+++|||-|++|+-|+ +++|++ |+++++.
T Consensus 149 GEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~ 201 (228)
T PRK14116 149 GENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDI 201 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHH
Confidence 46666777788888877542 4689999999999875 344444 6776653
No 86
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=31.01 E-value=58 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
++.+|+|+|..|. ||.. ++.+| +..|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3678999999986 6643 33444 45565
No 87
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=30.28 E-value=63 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCC
Q 007450 186 ILYDVFDYFEDVREQGGRVFVHCCQ 210 (603)
Q Consensus 186 ~l~~av~fI~~a~~~ggkVLVHC~a 210 (603)
.+.-++..++++.++|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4667899999999999999999953
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.29 E-value=67 Score=30.77 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcC
Q 007450 189 DVFDYFEDVREQGGRVFVHCC 209 (603)
Q Consensus 189 ~av~fI~~a~~~ggkVLVHC~ 209 (603)
.++.+++++...|.||||+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 688999999999999999995
No 89
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=28.82 E-value=1.9e+02 Score=29.51 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 007450 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (603)
Q Consensus 179 ~~~dl~~~l~~av~fI~~a~----~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~ 236 (603)
..+.+...+..++.|+++.+ ..|++|+|+|++.. +=+++|+-.|.+.++.+.
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhh
Confidence 34667777888888887655 46899999998733 334566666777655443
No 90
>PRK13938 phosphoheptose isomerase; Provisional
Probab=28.67 E-value=1.2e+02 Score=30.16 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHH
Q 007450 181 EDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (603)
Q Consensus 181 ~dl~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaaVviAYLM 224 (603)
..+.+.+.++.+.+.+++++|++|+|. |.|+|+.++..+-+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~ 65 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAA 65 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHH
Confidence 455667888888888999999999986 88888776654433
No 91
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=28.60 E-value=58 Score=28.64 Aligned_cols=38 Identities=26% Similarity=0.527 Sum_probs=26.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCc
Q 007450 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGV 244 (603)
Q Consensus 205 LVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP~ 244 (603)
..||.+ -+..+- ++.++|..+++++.+|++++.+.-.+
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~i 91 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFGI 91 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT-
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 689984 456654 58888999999999999999876443
No 92
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=27.97 E-value=48 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhc
Q 007450 210 QGVSRSTSLVIAYLMWREGQSFEDAFQYVKAAR 242 (603)
Q Consensus 210 aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~R 242 (603)
.|++|+.|.+++||+.....+- .-+..+-..|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~sS-~~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEASS-REIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchhh-hhhHHhhcCC
Confidence 5899999999999998744432 3344454444
No 93
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=27.74 E-value=1.3e+02 Score=30.39 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 007450 180 SEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (603)
Q Consensus 180 ~~dl~~~l~~av~fI~~a~~----~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~ 235 (603)
.+.+.+....+..++++.+. .+++|||-|++|+-|+ ++++++ |++.++..
T Consensus 148 GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~l---~~~~~~~~ 201 (227)
T PRK14118 148 AENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHIE---GISDADIM 201 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 46666777788888876543 4689999999998775 334433 66666543
No 94
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=25.89 E-value=1e+02 Score=30.45 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHH
Q 007450 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTS 217 (603)
Q Consensus 183 l~~~l~~av~fI~~a~~~ggkVLVHC~aGiSRSaa 217 (603)
+.+.+..+...|-+++.+|+|||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 4456777888888899999999986 6667755
No 95
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.79 E-value=69 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=19.0
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
+..+.+|+|+|..|. ||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH--HHHHHHHcCh
Confidence 356789999998884 7643 3445555554
No 96
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=25.27 E-value=85 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=19.5
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
.++.+|+|+|..|. ||.. +++++...|..
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 35689999999986 6533 34555555653
No 97
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=25.10 E-value=75 Score=29.72 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCC
Q 007450 187 LYDVFDYFEDVREQGGRVFVHCCQ 210 (603)
Q Consensus 187 l~~av~fI~~a~~~ggkVLVHC~a 210 (603)
..-++..++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456889999999999999999963
No 98
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=24.41 E-value=92 Score=30.02 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 007450 185 SILYDVFDYFEDVREQGGRVFVHCCQG 211 (603)
Q Consensus 185 ~~l~~av~fI~~a~~~ggkVLVHC~aG 211 (603)
..+.-++..++++.++|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 345678999999999999999999543
No 99
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.16 E-value=93 Score=26.63 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
+..|+|+|..|. ||..+ |+.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 578999999987 66443 334444455
No 100
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=23.83 E-value=1.5e+02 Score=29.72 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHH
Q 007450 180 SEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDA 234 (603)
Q Consensus 180 ~~dl~~~l~~av~fI~~a~~----~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA 234 (603)
.+.+.+....+..++++.+. .+++|||-|++|+-|. +++|++ |++.++.
T Consensus 149 GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~---l~~~~~---~~~~~~~ 201 (228)
T PRK14119 149 SESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRA---LIKYLE---DVSDEDI 201 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHH---HHHHHh---CCCHHHH
Confidence 46677778888888877543 4678999999999875 344544 5665443
No 101
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=23.04 E-value=1.9e+02 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=13.8
Q ss_pred cCCeEEEEcCCCCchHHHH
Q 007450 200 QGGRVFVHCCQGVSRSTSL 218 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaV 218 (603)
....|+|||..|-.||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3478999999865676543
No 102
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=22.98 E-value=91 Score=26.43 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=18.5
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
..+.+|+|+|..| .||.. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4568999999877 47744 44444 44564
No 103
>PHA02540 61 DNA primase; Provisional
Probab=22.97 E-value=1.1e+02 Score=33.44 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=30.8
Q ss_pred eEEEEcC-CCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcC
Q 007450 203 RVFVHCC-QGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (603)
Q Consensus 203 kVLVHC~-aGiSRSaaVviAYLM~~~g~sl~eA~~~Vr~~RP 243 (603)
....||. .|.+.. ++.|||...++++.||++.+.+...
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 6789995 477765 7899999999999999997666543
No 104
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.40 E-value=1.1e+02 Score=33.49 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.4
Q ss_pred HHhcCCeEEEEcCCCC
Q 007450 197 VREQGGRVFVHCCQGV 212 (603)
Q Consensus 197 a~~~ggkVLVHC~aGi 212 (603)
.+..|..||.||.+|-
T Consensus 163 ~I~dg~~ILThcnsg~ 178 (363)
T PRK05772 163 KLNDGDTVLTQCNAGG 178 (363)
T ss_pred hcCCCCEEEEecCCcc
Confidence 3456789999998873
No 105
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=22.35 E-value=59 Score=33.86 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=18.1
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~s 230 (603)
..+.+|+|+|..|+ |+ +++ ++++...|..
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~-~~~l~~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVV-VLALATLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHH-HHHHHHcCCC
Confidence 45689999999887 55 333 3333444543
No 106
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.10 E-value=87 Score=28.07 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=18.6
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 199 ~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
..+++|+|+|..|. ||...+ ..+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 45789999999995 875322 23444465
No 107
>PRK01112 phosphoglyceromutase; Provisional
Probab=21.85 E-value=1.9e+02 Score=29.27 Aligned_cols=52 Identities=27% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 007450 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (603)
Q Consensus 179 ~~~dl~~~l~~av~fI~~a~----~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~~ 236 (603)
..+.+.+....+..++++.+ ..+++|+|-|++|+-|+ ++++|. +++.+++.+
T Consensus 147 ~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~---l~~~ll---~~~~~~~~~ 202 (228)
T PRK01112 147 QGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRS---LIMDLE---KLSEEEVLS 202 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHhh
Confidence 34666666777777777543 25689999999999875 334443 667665554
No 108
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.71 E-value=1.7e+02 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
.+.+|+|+|..|. ||... +.+ ++..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~-L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDI-LLDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHH-HHHcCC
Confidence 4578999999995 76543 333 334454
No 109
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=21.63 E-value=1.9e+02 Score=29.36 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 007450 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (603)
Q Consensus 179 ~~~dl~~~l~~av~fI~~a~----~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~ 235 (603)
..+...+....+..+|++.+ ..+++|||-|++|+-|. ++++++ +++.++++
T Consensus 135 ~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir~---ll~~l~---~~~~~~~~ 189 (236)
T PTZ00123 135 NTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRA---LVKYLD---KMSEEDIL 189 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 35667777788888877643 34689999999988764 333433 56655543
No 110
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.60 E-value=1.4e+02 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 007450 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (603)
Q Consensus 198 ~~~ggkVLVHC~aGiSRSaaVviAYLM~~~g~ 229 (603)
+..+.+|+|+|..|. ||.. ++.+++..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~--a~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ--LAQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH--HHHHHHHcCC
Confidence 456789999999665 4433 3444445554
No 111
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=21.56 E-value=1.9e+02 Score=29.21 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHHHHHH-h---cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 007450 179 PSEDITSILYDVFDYFEDVR-E---QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (603)
Q Consensus 179 ~~~dl~~~l~~av~fI~~a~-~---~ggkVLVHC~aGiSRSaaVviAYLM~~~g~sl~eA~ 235 (603)
..+++.+....+..++++.+ . .+++|||-|++|+-|. ++++++ |++..+..
T Consensus 148 ~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~---ll~~~l---g~~~~~~~ 202 (230)
T PRK14117 148 DAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRA---LVKHIK---GLSDDEIM 202 (230)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHH---HHHHHh---CcCHHHHh
Confidence 34677777888888888754 2 3578999999999875 334433 66655544
No 112
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=21.31 E-value=92 Score=32.53 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCCCchHHHHHHHHHHhhcCCCHHHHHHH
Q 007450 209 CQGVSRSTSLVIAYLMWREGQSFEDAFQY 237 (603)
Q Consensus 209 ~aGiSRSaaVviAYLM~~~g~sl~eA~~~ 237 (603)
-=|+|||++.+.+-|+ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 3499999998888776 48888888764
No 113
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=20.76 E-value=1.8e+02 Score=25.90 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=13.1
Q ss_pred cCCeEEEEcCCCCchHHHH
Q 007450 200 QGGRVFVHCCQGVSRSTSL 218 (603)
Q Consensus 200 ~ggkVLVHC~aGiSRSaaV 218 (603)
.+.+|+|+|..| .||...
T Consensus 59 ~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH
Confidence 457899999988 365444
No 114
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.68 E-value=82 Score=27.67 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=12.9
Q ss_pred CCeEEEEcCCCCchHHH
Q 007450 201 GGRVFVHCCQGVSRSTS 217 (603)
Q Consensus 201 ggkVLVHC~aGiSRSaa 217 (603)
..+|||-|.+|++ |..
T Consensus 3 ~~~ILl~C~~G~s-SS~ 18 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSL 18 (95)
T ss_pred ccEEEEECCCchh-HHH
Confidence 3689999999998 433
Done!