BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007451
(603 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 146/262 (55%), Gaps = 4/262 (1%)
Query: 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENG 129
D+A+EKA+ R L + R DD T+LRFL+ARKFD+ +M+ WRK+ G
Sbjct: 27 DSAQEKALAELRKLLEDAGFI-ERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 130 VDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYH 189
DTI+QDF Y+E + YP YH DK+GRPVY E LG ++ ++ T+ ER LK
Sbjct: 85 TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144
Query: 190 VQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYP 249
V +E + PACS AA ++++ TI+D++G++ +S V I + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS-ISSAYSVMSYVREASYISQNYYP 203
Query: 250 EILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGG 309
E + + +I+NA GF + K FLDP T +KI +LG + +LL+ I + LP GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263
Query: 310 TCSC-PNEGGCLKSNKGPWSDP 330
++GG S+ GPW DP
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDP 285
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 153/270 (56%), Gaps = 20/270 (7%)
Query: 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDT 132
+E+A+ FR+ L+ ++ R DD T+LRFL+ARKFDI+ + +M+VE WR+E G +T
Sbjct: 39 QEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANT 96
Query: 133 IMQDFVYEEYDEVQ--------SCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVER 184
I++D YE E + YP YH VDK+GRP+Y E LG I+ K+ TT ++
Sbjct: 97 IIED--YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQ 154
Query: 185 FLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDL--VMRIQK 242
L+ V+ +E + + PACS A I+++ T+LD++G+ S H L + +
Sbjct: 155 MLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI---SLSNAYHVLSYIKDVAD 211
Query: 243 IDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQ 302
I + YPE + + +I+++ GF ++ K FLDP T +KI +LG + +LL+ I
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271
Query: 303 LPDFLGGTCSC--PNEGGCLKSNKGPWSDP 330
LP GGT PN+ S+ GPW DP
Sbjct: 272 LPVKYGGTSVLHNPND-KFYYSDIGPWRDP 300
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDT 132
+E+A+ FR+ L+ ++ R DD T+LRFL+ARKFDI+ + +M+VE WR+E G +T
Sbjct: 39 QEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANT 96
Query: 133 IMQDFVYEEYDEVQ--------SCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVER 184
I++D YE E + YP YH VDK+GRP+Y LG I+ K+ TT ++
Sbjct: 97 IIED--YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQ 154
Query: 185 FLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDL--VMRIQK 242
L+ V+ +E + + PACS A I+++ T+LD++G+ S H L + +
Sbjct: 155 MLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI---SLSNAYHVLSYIKDVAD 211
Query: 243 IDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQ 302
I + YPE + + +I+++ GF ++ K FLDP T +KI +LG + +LL+ I
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271
Query: 303 LPDFLGGTCSC--PNEGGCLKSNKGPWSDP 330
LP GGT PN+ S+ GPW DP
Sbjct: 272 LPVKYGGTSVLHNPND-KFYYSDIGPWRDP 300
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 124/248 (50%), Gaps = 15/248 (6%)
Query: 73 EEKAVNGFRNALIARDMLPS--RHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGV 130
+++A+ FR + +D+LP+ DDY +LR+L+AR FD+ K+ M + + +RK+ +
Sbjct: 12 QKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEFRKQKDI 68
Query: 131 DTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHV 190
D I+ ++ + +Q G G D +G PV+ + +G +D L+ + + L+ +
Sbjct: 69 DNIIS---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM 125
Query: 191 QGFEKTFSEKFPAC---SIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDN 247
+ E E C + R +++ I D +G+ K A + + +N
Sbjct: 126 RECELLLQE----CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEEN 181
Query: 248 YPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFL 307
YPE L ++F+V A F + +N K FL T KI VLG + + LL+ I Q+P
Sbjct: 182 YPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY 241
Query: 308 GGTCSCPN 315
GGT + P+
Sbjct: 242 GGTMTDPD 249
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 124/248 (50%), Gaps = 15/248 (6%)
Query: 73 EEKAVNGFRNALIARDMLPS--RHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGV 130
+++A+ FR + +D+LP+ DDY +LR+L+AR FD+ K+ M + + +RK+ +
Sbjct: 12 QKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEFRKQKDI 68
Query: 131 DTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHV 190
D I+ ++ + +Q G G D +G PV+ + +G +D L+ + + L+ +
Sbjct: 69 DNIIS---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM 125
Query: 191 QGFEKTFSEKFPAC---SIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDN 247
+ E E C + R +++ I D +G+ K A + + +N
Sbjct: 126 RECELLLQE----CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEEN 181
Query: 248 YPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFL 307
YPE L ++F+V A F + +N K FL T KI VLG + + LL+ I Q+P
Sbjct: 182 YPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY 241
Query: 308 GGTCSCPN 315
GGT + P+
Sbjct: 242 GGTMTDPD 249
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 73 EEKAVNGFRNALIARDMLPS--RHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGV 130
+++A+ FR + +D+LP+ DDY +LR+L+AR FD+ K+ + + +RK+ +
Sbjct: 12 QKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAXLRKHVEFRKQKDI 68
Query: 131 DTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHV 190
D I+ ++ + +Q G G D +G PV+ + +G +D L+ + + L+
Sbjct: 69 DNIIS---WQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKX 125
Query: 191 QGFEKTFSEKFPAC---SIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDN 247
+ E E C + R +++ I D +G+ K A + +N
Sbjct: 126 RECELLLQE----CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEEN 181
Query: 248 YPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFL 307
YPE L ++F+V A F + +N K FL T KI VLG + + LL+ I Q+P
Sbjct: 182 YPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEY 241
Query: 308 GGTCSCPN 315
GGT + P+
Sbjct: 242 GGTXTDPD 249
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 100 MLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGV--- 156
+LRFL+AR FD+D +++ WR E I D + GYHGV
Sbjct: 52 LLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADL---HPRSIIGLLKAGYHGVLRS 106
Query: 157 -DKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDST 215
D G V I R+ DP K+ + V R + + + +R +
Sbjct: 107 RDPTGSKVLIYRIAHWDP-KVFTAYDVFRV---------SLITSELIVQEVETQR--NGI 154
Query: 216 ITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFL 275
I D++G + ++ + +I + D++P + + ++N F V++ K FL
Sbjct: 155 KAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFL 214
Query: 276 DPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFL 307
K +I + G + LL+ PD L
Sbjct: 215 TEKIKERIHMHGNNYKQSLLQ-----HFPDIL 241
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 26/212 (12%)
Query: 100 MLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYPHGYHGV--- 156
+LRFL+AR FD+D +++ WR E I D + GYHGV
Sbjct: 36 LLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADL---HPRSIIGLLKAGYHGVLRS 90
Query: 157 -DKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDST 215
D G V I R+ DP K+ + V R + + + +R +
Sbjct: 91 RDPTGSKVLIYRIAHWDP-KVFTAYDVFRV---------SLITSELIVQEVETQR--NGI 138
Query: 216 ITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFL 275
I D++G + ++ + +I + D++P + + ++N F V++ K FL
Sbjct: 139 KAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFL 198
Query: 276 DPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFL 307
K +I G + LL+ PD L
Sbjct: 199 TEKIKERIHXHGNNYKQSLLQ-----HFPDIL 225
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/249 (18%), Positives = 103/249 (41%), Gaps = 20/249 (8%)
Query: 64 SIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLN 123
++ ++++ + +A +G A+ + + + + LRF++ARKF++ + +++ +N
Sbjct: 61 AVRELQEMVQAQAASGEELAVAVAERVQEKDSGF--FLRFIRARKFNVGRAYELLRGYVN 118
Query: 124 WRKE--NGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTT 181
+R + D++ + V +++ YP DK GR V + + ++ T
Sbjct: 119 FRLQYPELFDSLSPEAV---RCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----T 171
Query: 182 VERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQ 241
+ L+ + EK + + I+ I + +G + + ++
Sbjct: 172 FDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTMQQAASLRTSDLRKMV 223
Query: 242 KIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSS 301
+ D++P + ++ F +N K FL K ++ V G + ID +
Sbjct: 224 DMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDEN 282
Query: 302 QLPDFLGGT 310
LP GGT
Sbjct: 283 ILPSDFGGT 291
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/250 (18%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 64 SIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLN 123
++ ++++ + +A +G A+ + + + + LRF++ARKF++ + +++ +N
Sbjct: 61 AVRELQEXVQAQAASGEELAVAVAERVQEKDSGF--FLRFIRARKFNVGRAYELLRGYVN 118
Query: 124 WRKE--NGVDTIMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTT 181
+R + D++ + V +++ YP DK GR V + + ++ T
Sbjct: 119 FRLQYPELFDSLSPEAV---RCTIEAGYPGVLSSRDKYGRVVXLFNIENWQSQEI----T 171
Query: 182 VERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKV-AHDLVMRI 240
+ L+ + EK + + I+ I + +G + DL +
Sbjct: 172 FDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTXQQAASLRTSDLRKXV 223
Query: 241 QKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDS 300
+ D++P + ++ F +N K FL K ++ V G + ID
Sbjct: 224 DXLQ-DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDE 281
Query: 301 SQLPDFLGGT 310
+ LP GGT
Sbjct: 282 NILPSDFGGT 291
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 467 WLKGLFVAQHSCKKLENQTKSPLPCTSSQEQSISQAVENQSFHPCWERLQRLEELVTDLV 526
W KGL A K SP P +EQ +E F+P + + L+ D +
Sbjct: 56 WQKGLRHAXEEIXKFPQIKNSPAPVCIKREQREGYRLEKWEFYPLPKCVSTFLVLIPDNI 115
Query: 527 NKP 529
NKP
Sbjct: 116 NKP 118
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
Thiobacillus Denitrificans To 2.15a
Length = 444
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 396 GRMSEPTSTSSVAEQTDVAGVHEAISTNRLPH 427
G SEPT+++ VA+ DV +H A +R+PH
Sbjct: 306 GAGSEPTASAVVADLVDVTRLHTADPHHRVPH 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,199,059
Number of Sequences: 62578
Number of extensions: 639323
Number of successful extensions: 1508
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 17
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)