Query 007451
Match_columns 603
No_of_seqs 311 out of 1533
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1.1E-44 2.5E-49 379.8 23.7 268 71-341 20-290 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2.5E-35 5.4E-40 304.3 18.6 197 96-313 48-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.1E-29 2.3E-34 238.5 9.8 156 145-310 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 7.1E-28 1.5E-32 226.0 14.7 155 144-312 4-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3E-24 6.5E-29 198.5 14.5 144 154-310 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 1.1E-13 2.4E-18 129.7 3.5 139 154-314 7-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 8.5E-08 1.8E-12 75.4 5.3 47 74-121 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 3.4E-05 7.4E-10 82.5 9.3 127 156-303 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 83.3 1.2 2.5E-05 36.7 2.9 24 503-526 12-35 (75)
10 PRK01026 tetrahydromethanopter 80.3 1.7 3.7E-05 36.6 2.9 26 501-526 10-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 78.7 1.7 3.7E-05 35.8 2.4 25 502-526 8-32 (70)
12 KOG3313 Molecular chaperone Pr 77.9 13 0.00029 36.2 8.5 76 518-593 20-109 (187)
13 PF04210 MtrG: Tetrahydrometha 74.2 2.7 5.8E-05 34.8 2.4 24 502-525 8-31 (70)
14 PF10805 DUF2730: Protein of u 60.0 59 0.0013 29.1 8.4 62 507-572 36-98 (106)
15 PF14555 UBA_4: UBA-like domai 54.2 41 0.0009 24.9 5.4 36 75-119 2-37 (43)
16 PF02845 CUE: CUE domain; Int 53.3 38 0.00082 24.9 5.0 38 75-120 3-40 (42)
17 KOG1962 B-cell receptor-associ 49.1 73 0.0016 32.3 7.8 73 506-578 114-191 (216)
18 smart00546 CUE Domain that may 44.4 56 0.0012 24.0 4.8 38 75-120 4-41 (43)
19 TIGR02132 phaR_Bmeg polyhydrox 41.5 65 0.0014 31.6 5.9 72 505-577 71-153 (189)
20 PF05377 FlaC_arch: Flagella a 40.6 64 0.0014 25.7 4.7 35 546-580 1-35 (55)
21 TIGR03752 conj_TIGR03752 integ 40.0 1.3E+02 0.0027 34.1 8.6 74 503-576 56-136 (472)
22 PHA01750 hypothetical protein 40.0 1.2E+02 0.0025 25.1 6.1 42 538-581 30-71 (75)
23 TIGR03185 DNA_S_dndD DNA sulfu 37.9 1.1E+02 0.0024 35.9 8.3 57 506-564 391-447 (650)
24 KOG0612 Rho-associated, coiled 35.7 1.1E+02 0.0024 38.3 7.7 48 507-562 442-492 (1317)
25 COG1340 Uncharacterized archae 33.9 2.2E+02 0.0047 30.3 8.8 65 507-580 108-172 (294)
26 PF11802 CENP-K: Centromere-as 33.2 2.4E+02 0.0053 29.6 8.9 39 505-543 51-89 (268)
27 PHA00687 hypothetical protein 32.8 88 0.0019 23.9 4.1 30 530-559 9-48 (56)
28 PF13080 DUF3926: Protein of u 31.4 48 0.001 24.9 2.4 22 555-579 13-34 (44)
29 PF10212 TTKRSYEDQ: Predicted 29.4 2.3E+02 0.0051 32.4 8.6 56 506-572 441-510 (518)
30 PF08317 Spc7: Spc7 kinetochor 29.0 2E+02 0.0042 30.8 7.8 75 507-581 178-252 (325)
31 KOG0249 LAR-interacting protei 28.8 2.4E+02 0.0052 33.5 8.6 75 504-578 171-249 (916)
32 PRK10884 SH3 domain-containing 27.9 1.6E+02 0.0034 29.7 6.4 73 510-582 90-169 (206)
33 PF14712 Snapin_Pallidin: Snap 27.8 1.1E+02 0.0025 26.0 4.8 34 548-581 10-43 (92)
34 PF01496 V_ATPase_I: V-type AT 27.3 1.9E+02 0.0041 34.7 8.0 61 516-576 204-268 (759)
35 PF12718 Tropomyosin_1: Tropom 27.0 1.1E+02 0.0023 29.0 4.8 67 505-571 34-106 (143)
36 PF05276 SH3BP5: SH3 domain-bi 26.5 3.5E+02 0.0077 27.9 8.7 54 510-565 95-148 (239)
37 COG1579 Zn-ribbon protein, pos 25.6 3.2E+02 0.007 28.2 8.2 54 537-590 123-204 (239)
38 PRK14136 recX recombination re 25.3 54 0.0012 35.0 2.6 24 97-120 278-301 (309)
39 PF13234 rRNA_proc-arch: rRNA- 25.0 2E+02 0.0042 29.7 6.8 70 508-580 182-263 (268)
40 PF10368 YkyA: Putative cell-w 23.5 1.9E+02 0.0042 28.9 6.1 76 505-580 31-110 (204)
41 PF04880 NUDE_C: NUDE protein, 23.2 1E+02 0.0022 30.1 3.8 32 535-567 4-35 (166)
42 KOG1838 Alpha/beta hydrolase [ 23.2 5.2E+02 0.011 28.9 9.7 89 158-271 122-216 (409)
43 PF03961 DUF342: Protein of un 23.1 2.9E+02 0.0063 30.9 8.1 55 507-561 342-398 (451)
44 PF05335 DUF745: Protein of un 22.3 1.3E+02 0.0029 29.8 4.6 31 534-564 140-177 (188)
45 PF05529 Bap31: B-cell recepto 21.5 2.2E+02 0.0047 27.8 6.0 64 506-570 118-185 (192)
46 PF10158 LOH1CR12: Tumour supp 21.4 2.3E+02 0.0049 26.6 5.7 58 509-567 52-109 (131)
47 PF11221 Med21: Subunit 21 of 21.4 2.2E+02 0.0047 26.8 5.7 59 511-578 78-137 (144)
48 smart00353 HLH helix loop heli 20.6 2.7E+02 0.0058 20.8 5.1 24 532-555 29-52 (53)
49 PHA02562 46 endonuclease subun 20.4 2E+02 0.0043 32.7 6.2 75 505-580 298-372 (562)
50 COG1842 PspA Phage shock prote 20.3 6.8E+02 0.015 25.6 9.3 51 505-561 58-108 (225)
51 COG2137 OraA Uncharacterized p 20.3 1.7E+02 0.0037 28.7 4.9 32 90-121 133-164 (174)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=379.81 Aligned_cols=268 Identities=44% Similarity=0.727 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccchhhhHhhhhcccc
Q 007451 71 AAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYP 150 (603)
Q Consensus 71 ~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~I~~d~~~~el~~v~~~~p 150 (603)
+.+++.++.+| |+..+++++..++|+.+|||||||++||+++|+++|.+++.||++++.+.|..+ ......+.+++|
T Consensus 20 ~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~--~~~~~~~~~~~~ 96 (317)
T KOG1471|consen 20 ESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED--FEEDDELLKYYP 96 (317)
T ss_pred HHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc--cccchhhhhhcc
Confidence 55677777777 999999999756666899999999999999999999999999999999999876 233345556899
Q ss_pred cccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcc
Q 007451 151 HGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFG 230 (603)
Q Consensus 151 ~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~ 230 (603)
++++|+|++|+||++.+.|..|...++..+...++.++++..+|+.+...++.|....+++++|+++|+|++|+++.++.
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999998898888778899999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCCCccCCCC
Q 007451 231 KVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT 310 (603)
Q Consensus 231 ~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~LP~eyGGt 310 (603)
......+++++.++++|||++++++||||+|++|+++|++|||||+++|++||++++.++.+.|+++|+++.||++|||+
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~ 256 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGT 256 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999977677889999999999999999999
Q ss_pred CCCCC---CCCcccCCCCCCCChhhhhhhhcccc
Q 007451 311 CSCPN---EGGCLKSNKGPWSDPGIMKLVHAGNA 341 (603)
Q Consensus 311 ~~~~~---~~gcl~~~~gpw~dp~i~k~v~~~~~ 341 (603)
|++.+ .++|..++.+||.++.+.+.......
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (317)
T KOG1471|consen 257 CGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEIEE 290 (317)
T ss_pred ccccccccCCcCcccccccccccccccccccccc
Confidence 99963 56799999999999888765544443
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=304.25 Aligned_cols=197 Identities=30% Similarity=0.446 Sum_probs=171.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCc-ccccchhhhHhhhhcccccccccCCCCCCeEEEEEcCcCCcC
Q 007451 96 DYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDT-IMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPS 174 (603)
Q Consensus 96 D~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~-I~~d~~~~el~~v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~ 174 (603)
.+.+++|||||+|||+++|.+||.++|.||+.+++.. +..+....+++.... +++|+|++||||+|+++....++
T Consensus 48 ~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~----yi~G~D~~gRPVl~~~~~~~~qn 123 (324)
T KOG1470|consen 48 SDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKA----YILGHDKDGRPVLYLRPRPHRQN 123 (324)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcE----EEecccCCCCeEEEEecCCCCCC
Confidence 3369999999999999999999999999999999877 544433344433332 35789999999999977665554
Q ss_pred CccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhHHHHHHHHHHhhcccccccccE
Q 007451 175 KLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQ 254 (603)
Q Consensus 175 kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~~~llk~i~kilq~~YPerL~~ 254 (603)
. .+.+++.++.++++|.++..+ ...++++++|+|++|+|++|++ +...+.+++++|+||||||+.
T Consensus 124 ~----~t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg~ 188 (324)
T KOG1470|consen 124 T----KTQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLGK 188 (324)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhhh
Confidence 4 388999999999999998764 3467889999999999999988 889999999999999999999
Q ss_pred EEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCCCccCCCCCCC
Q 007451 255 MFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSC 313 (603)
Q Consensus 255 I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~LP~eyGGt~~~ 313 (603)
.+|+|+||+|..+|+++||||||+|++||.|..+ ...|.+|||+++||..+||+...
T Consensus 189 a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 189 ALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred hhhcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhhCCCccc
Confidence 9999999999999999999999999999999976 35599999999999999997655
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=1.1e-29 Score=238.52 Aligned_cols=156 Identities=33% Similarity=0.559 Sum_probs=129.7
Q ss_pred hhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCC
Q 007451 145 VQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGV 224 (603)
Q Consensus 145 v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gv 224 (603)
+.+.++++++|+|++||||++++++++|+... +.+++++++++.+|.+++...+ +.+++|+++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~----~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKF----SPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-----HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCcC----CHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCCc
Confidence 45677888999999999999999999999864 6889999999999999865321 2578999999999999
Q ss_pred CcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCC-cchHHHHccCCCCCC
Q 007451 225 NWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGY-KFHDKLLEVIDSSQL 303 (603)
Q Consensus 225 sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~-~~~~~Lle~Id~d~L 303 (603)
++++++......++.++++++++||++++++||||+|++|+++|+++++||+++|++||+++++ ++.+.|.++||+++|
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 9999876558999999999999999999999999999999999999999999999999999965 555799999999999
Q ss_pred CccCCCC
Q 007451 304 PDFLGGT 310 (603)
Q Consensus 304 P~eyGGt 310 (603)
|.+|||+
T Consensus 153 P~~~GG~ 159 (159)
T PF00650_consen 153 PVEYGGT 159 (159)
T ss_dssp BGGGTSS
T ss_pred chhcCCC
Confidence 9999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=7.1e-28 Score=225.97 Aligned_cols=155 Identities=37% Similarity=0.580 Sum_probs=140.6
Q ss_pred hhhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCC
Q 007451 144 EVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQG 223 (603)
Q Consensus 144 ~v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~G 223 (603)
....++++++ |.|++||||++++++++++... +.+++++++++.+|.++.... ...++.++++|+|++|
T Consensus 4 ~~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~i~D~~~ 72 (158)
T smart00516 4 LGKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSV----TLEELLRYLVYVLEKILQREK------KTGGIEGFTVIFDLKG 72 (158)
T ss_pred hHHHhcCCCC-CCCCCcCEEEEEeccccccCcC----CHHHHHHHHHHHHHHHHHHHh------cCCCeeeEEEEEECCC
Confidence 3456778777 9999999999999999987664 899999999999999887521 2457899999999999
Q ss_pred CCcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCC
Q 007451 224 VNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL 303 (603)
Q Consensus 224 vsl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~L 303 (603)
+++++++ .+.++.++++++++||++++++||+|+|++++++|+++++|+++++++||+++++++.+.|.++||+++|
T Consensus 73 ~~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 73 LSMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred CCccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 9999976 7889999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred CccCCCCCC
Q 007451 304 PDFLGGTCS 312 (603)
Q Consensus 304 P~eyGGt~~ 312 (603)
|.+|||++.
T Consensus 150 P~~~GG~~~ 158 (158)
T smart00516 150 PEELGGTLD 158 (158)
T ss_pred cHhhCCCCC
Confidence 999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=3e-24 Score=198.48 Aligned_cols=144 Identities=40% Similarity=0.611 Sum_probs=129.0
Q ss_pred ccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhH
Q 007451 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (603)
Q Consensus 154 ~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~ 233 (603)
.|.|++||||++++++..+.... .+.+++++++++.+|..+..... ...|+++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccc-hh
Confidence 35699999999999997666544 24489999999999999876422 23799999999999999986 56
Q ss_pred HHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCCCccCCCC
Q 007451 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT 310 (603)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~LP~eyGGt 310 (603)
.+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 88999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.40 E-value=1.1e-13 Score=129.74 Aligned_cols=139 Identities=24% Similarity=0.349 Sum_probs=95.1
Q ss_pred ccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhH
Q 007451 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (603)
Q Consensus 154 ~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~ 233 (603)
.|+|++||||+++..... ++. .+.+.++.|++..+.... ...++++|+|++|.+..+-+ .
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~~--~ 66 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSEP--S 66 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG-----
T ss_pred cccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccCC--c
Confidence 489999999999997777 332 266777777766552111 12469999999999885543 3
Q ss_pred HHHHHHHHHhhcccccccccEEEEEeCChhHHHHH-HHHhhcCChhh-hcceEEcCCcchHHHHccCCCCCCCccCCCCC
Q 007451 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVW-NTAKGFLDPKT-TAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTC 311 (603)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW-~lVKpFLdpkT-~~KI~~l~~~~~~~Lle~Id~d~LP~eyGGt~ 311 (603)
...++.+.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||+.+||+.
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGVL 144 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HHH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCEE
Confidence 67889999999999999999999999999999999 55567778888 899999876 789999999999999999987
Q ss_pred CCC
Q 007451 312 SCP 314 (603)
Q Consensus 312 ~~~ 314 (603)
...
T Consensus 145 ~~d 147 (149)
T PF13716_consen 145 QYD 147 (149)
T ss_dssp ---
T ss_pred ecC
Confidence 653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.58 E-value=8.5e-08 Score=75.42 Aligned_cols=47 Identities=38% Similarity=0.646 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007451 74 EKAVNGFRNALIAR--------DMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (603)
Q Consensus 74 ~~~V~~LRe~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 121 (603)
+++|++|++.|... +.....++| .+||||||||+||+++|..||.++
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 46889999999873 345566666 699999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=3.4e-05 Score=82.54 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhHHH
Q 007451 156 VDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHD 235 (603)
Q Consensus 156 ~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~~~ 235 (603)
.|+.||+|+++-..++-...- .+-.++++|.++.++..++.. .|.+.=-.|+...+.+ .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~D--------------Yt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEND--------------YTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhcc--------------ceeeehhcCCcccccc--hHH
Confidence 699999999998777654431 133348999999999988642 5666667777777654 366
Q ss_pred HHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCC
Q 007451 236 LVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL 303 (603)
Q Consensus 236 llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~L 303 (603)
++....+-+..+|--.++.+|+|.+-|+.+++|+++|||++.+...||+-+.. .++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~--lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS--LSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh--HHHHHHhhhhhhh
Confidence 66666666677899999999999999999999999999999999999999864 7889888875443
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=83.28 E-value=1.2 Score=36.74 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHhc
Q 007451 503 VENQSFHPCWERLQRLEELVTDLV 526 (603)
Q Consensus 503 ~~~~~~~~~~kRl~eLEekv~~L~ 526 (603)
++.|+|..+.+||.++|+||+.-.
T Consensus 12 v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhH
Confidence 888999999999999999997543
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=80.33 E-value=1.7 Score=36.64 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhc
Q 007451 501 QAVENQSFHPCWERLQRLEELVTDLV 526 (603)
Q Consensus 501 ~~~~~~~~~~~~kRl~eLEekv~~L~ 526 (603)
..++.++|..+++||.++||||+.-+
T Consensus 10 viv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 10 VVVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33889999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=78.73 E-value=1.7 Score=35.83 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhc
Q 007451 502 AVENQSFHPCWERLQRLEELVTDLV 526 (603)
Q Consensus 502 ~~~~~~~~~~~kRl~eLEekv~~L~ 526 (603)
.++.++|..+++||.++||||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999998643
No 12
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=77.88 E-value=13 Score=36.20 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHhHHHHHHHHHHhhhcc--cc--------
Q 007451 518 LEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLA---TASKQVELAESLEQLKENS--IP-------- 584 (603)
Q Consensus 518 LEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~---tl~kQ~El~ayie~~k~~k--~~-------- 584 (603)
+=|-|+...+||.--+.++..++++...--+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+- +.
T Consensus 20 fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~ 99 (187)
T KOG3313|consen 20 FIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDG 99 (187)
T ss_pred HHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEeccc
Confidence 3356788899999999999999999999999999999999999986 4677789999998886554 31
Q ss_pred -cccccccCC
Q 007451 585 -VASACWPRN 593 (603)
Q Consensus 585 -~c~~~~~~~ 593 (603)
||++|+|..
T Consensus 100 vy~ka~V~~~ 109 (187)
T KOG3313|consen 100 VYTKASVPPT 109 (187)
T ss_pred ceeeeecCCc
Confidence 999999864
No 13
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=74.17 E-value=2.7 Score=34.78 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHh
Q 007451 502 AVENQSFHPCWERLQRLEELVTDL 525 (603)
Q Consensus 502 ~~~~~~~~~~~kRl~eLEekv~~L 525 (603)
.++.++|..+++||.++||||+.-
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~ 31 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFT 31 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhH
Confidence 378899999999999999999754
No 14
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.02 E-value=59 Score=29.08 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKE-DMLLESLSRIKSIEHDLQRTKKALLATASKQVELA 572 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-e~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ 572 (603)
++..+-+|+++.+..++.|..+=..||-.++ .-|+-+ +..++-++.++...| +.+.+|.+||
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~---l~el~G~~~~l~~~l-~~v~~~~~lL 98 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLE---LAELRGELKELSARL-QGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4444534444444444444444444554433 112222 222333333333333 3456666654
No 15
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=54.24 E-value=41 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 007451 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWV 119 (603)
Q Consensus 75 ~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~ 119 (603)
+.|.+|...... ++ .....||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg~--------~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGA--------DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-S--------SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 467777766521 23 4789999999999999998764
No 16
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=53.30 E-value=38 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 75 ~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
+.|+.|++.. |.. +. ..+..-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF------P~~-~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PDL-DR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SSS--H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CCC-CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666665 432 33 47889999999999999998864
No 17
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.10 E-value=73 Score=32.31 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHHHHH-----HHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 007451 506 QSFHPCWERLQRLEEL-----VTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQL 578 (603)
Q Consensus 506 ~~~~~~~kRl~eLEek-----v~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~ 578 (603)
+.++..+.||..|++- -+....|+.+=+-.+|+=........+-||.||+++++.|+.+-.+=.+|--+.|.+
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888888872 333333444444445666677778899999999999999987665555555555543
No 18
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=44.39 E-value=56 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 75 ~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
+.++.|++.. |.. ++ ..+.+.|+++++|++.|++.|.+
T Consensus 4 ~~v~~L~~mF------P~l-~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PNL-DE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CCC-CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666664 433 33 47889999999999999988753
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.50 E-value=65 Score=31.64 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHHHHHHHHh-------cCC----CCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 007451 505 NQSFHPCWERLQRLEELVTDL-------VNK----PKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAE 573 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L-------~~K----P~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~a 573 (603)
.+++..+-.|+-.||+||+.| -.. --.=|.+|++ ++.-=.||.+||.-+.+-=.+|+-----|.||-+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~-v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~ 149 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD-VTKLKQDIKSLDKKLDKILELLEGQQKTQDELKE 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH-HHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHH
Confidence 345555555555555554443 222 2256777776 3556678888888777766666633333444444
Q ss_pred HHHH
Q 007451 574 SLEQ 577 (603)
Q Consensus 574 yie~ 577 (603)
.|.+
T Consensus 150 ~~~~ 153 (189)
T TIGR02132 150 TIQK 153 (189)
T ss_pred HHHH
Confidence 4433
No 20
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.57 E-value=64 Score=25.71 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007451 546 RIKSIEHDLQRTKKALLATASKQVELAESLEQLKE 580 (603)
Q Consensus 546 Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~ 580 (603)
||+.||.+|.+-+-.+...=.-.++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444433333333444455544443
No 21
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.03 E-value=1.3e+02 Score=34.10 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=51.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHH--HHH-----HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007451 503 VENQSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLL--ESL-----SRIKSIEHDLQRTKKALLATASKQVELAESL 575 (603)
Q Consensus 503 ~~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~--aa~-----~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayi 575 (603)
+..|-+..++-++.+|+.++..|...-...=.|.|+|-+ .++ .+|.+-..||+.....|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999998776666666666643 111 2344556677777777776666555555555
Q ss_pred H
Q 007451 576 E 576 (603)
Q Consensus 576 e 576 (603)
.
T Consensus 136 ~ 136 (472)
T TIGR03752 136 Q 136 (472)
T ss_pred H
Confidence 3
No 22
>PHA01750 hypothetical protein
Probab=40.02 E-value=1.2e+02 Score=25.14 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 007451 538 DMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKEN 581 (603)
Q Consensus 538 e~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~ 581 (603)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777654 56778888888888889999999888777654
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.87 E-value=1.1e+02 Score=35.94 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007451 506 QSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLAT 564 (603)
Q Consensus 506 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~t 564 (603)
..+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+...
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~ 447 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEEL 447 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998888864 234444455555555555554444433
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.71 E-value=1.1e+02 Score=38.28 Aligned_cols=48 Identities=38% Similarity=0.512 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHH---HHHHHHHHHhhHHHHHHHHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKEDM---LLESLSRIKSIEHDLQRTKKALL 562 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~---L~aa~~Rv~~lE~eL~~TKKaL~ 562 (603)
....-++.++.|+++...++ |+|+| |+.++.+.+.-|++|..+.+||.
T Consensus 442 ~l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~ 492 (1317)
T KOG0612|consen 442 SLVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL 492 (1317)
T ss_pred chhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677899999999999998 78887 89999999999999999877764
No 25
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.89 E-value=2.2e+02 Score=30.31 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKE 580 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~ 580 (603)
.+.+.=+.+++||.+..+. ..||++|.=| |.+|.-|+.+|+..+|++....--| ||.+-|+..+.
T Consensus 108 ~~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~ 172 (294)
T COG1340 108 SIKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKK 172 (294)
T ss_pred CHHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3566778899999998874 4788899766 6677779999999999999988775 45555555553
No 26
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=33.17 E-value=2.4e+02 Score=29.55 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=33.4
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 007451 505 NQSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLES 543 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa 543 (603)
...++-.|-|+..|+..++..+.+-+++.+.+++.|-+.
T Consensus 51 ~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 51 DAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 345678899999999999999999999999998887643
No 27
>PHA00687 hypothetical protein
Probab=32.75 E-value=88 Score=23.90 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHH----------HHHHHhhHHHHHHHHH
Q 007451 530 KRIPPEKEDMLLES----------LSRIKSIEHDLQRTKK 559 (603)
Q Consensus 530 ~~mP~EKEe~L~aa----------~~Rv~~lE~eL~~TKK 559 (603)
..+|||--.+|+.| +.||++||.--++.|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 45889999999876 5789999876666554
No 28
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=31.41 E-value=48 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhh
Q 007451 555 QRTKKALLATASKQVELAESLEQLK 579 (603)
Q Consensus 555 ~~TKKaL~~tl~kQ~El~ayie~~k 579 (603)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788886 67999999997665
No 29
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.36 E-value=2.3e+02 Score=32.38 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHhHHHH
Q 007451 506 QSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKK--------------ALLATASKQVEL 571 (603)
Q Consensus 506 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKK--------------aL~~tl~kQ~El 571 (603)
++...+.+||...|+.-.. .++=|..+-.+|..||.||..|++ .|.+.|++|.|=
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888776554 345589999999999999999998 466667777654
Q ss_pred H
Q 007451 572 A 572 (603)
Q Consensus 572 ~ 572 (603)
.
T Consensus 510 I 510 (518)
T PF10212_consen 510 I 510 (518)
T ss_pred H
Confidence 3
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.99 E-value=2e+02 Score=30.83 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKEN 581 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~ 581 (603)
.+..+..|.+.|++.+..|...+.++=..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..++.
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888887765333344566667777777777766666655544444555555544433
No 31
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.75 E-value=2.4e+02 Score=33.55 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=44.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 007451 504 ENQSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDM----LLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQL 578 (603)
Q Consensus 504 ~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~----L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~ 578 (603)
+.++..+-++|.-.+|+.=.+=+-.=+.--+|.+++ +++|+.++..|++||+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344555566666665554332221111111133332 578999999999999999999988765444444444443
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.89 E-value=1.6e+02 Score=29.68 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC-------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 007451 510 PCWERLQRLEELVTDLVNKPKRI-------PPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKENS 582 (603)
Q Consensus 510 ~~~kRl~eLEekv~~L~~KP~~m-------P~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~k 582 (603)
++-.||.+||..+..|..|..++ =.|..+-+.++=.-|..|+.|...-++-|..+-.+=++|-+-++.+++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444433 22333444455555666777777777777666666566666666666543
No 33
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.85 E-value=1.1e+02 Score=26.03 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.6
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 007451 548 KSIEHDLQRTKKALLATASKQVELAESLEQLKEN 581 (603)
Q Consensus 548 ~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~ 581 (603)
..++-.|...+..|.++...|.+|.+.|++...+
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~ 43 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEK 43 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888889999999999999999877643
No 34
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=27.25 E-value=1.9e+02 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCCCchH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH-HHHHHHHH
Q 007451 516 QRLEELVTDLVNKPKRIPPEK---EDMLLESLSRIKSIEHDLQRTKKALLATASKQ-VELAESLE 576 (603)
Q Consensus 516 ~eLEekv~~L~~KP~~mP~EK---Ee~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ-~El~ayie 576 (603)
+++++-+..++-..-.+|... ++++++--.|++.++.+++.|++.|.+.+.+- ++|.++-+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ 268 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYE 268 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888643 68999999999999999999999999766553 34444433
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.00 E-value=1.1e+02 Score=28.95 Aligned_cols=67 Identities=27% Similarity=0.263 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCC---CchHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Q 007451 505 NQSFHPCWERLQRLEELVTDLVNKPKRI---PPEKEDMLL---ESLSRIKSIEHDLQRTKKALLATASKQVEL 571 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L~~KP~~m---P~EKEe~L~---aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El 571 (603)
..++.++=+|++.||..|..+..+=.+. ..+.+.... +.-+||..||.||..+-+.|.+|..|=.+.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888777776553322 223333221 345789999999999999999998775544
No 36
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=26.45 E-value=3.5e+02 Score=27.89 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007451 510 PCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATA 565 (603)
Q Consensus 510 ~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl 565 (603)
.-=+.++-+|+.+..-+. ..+=+..-||||.|..||-.-|++-......-....
T Consensus 95 aAKe~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~ 148 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRA 148 (239)
T ss_pred HHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888776544 568899999999999999988888777766555443
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.62 E-value=3.2e+02 Score=28.20 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----------HH--------HHHHHHHHhhhccc---------ccccc
Q 007451 537 EDMLLESLSRIKSIEHDLQRTKKALLATASK-----------QV--------ELAESLEQLKENSI---------PVASA 588 (603)
Q Consensus 537 Ee~L~aa~~Rv~~lE~eL~~TKKaL~~tl~k-----------Q~--------El~ayie~~k~~k~---------~~c~~ 588 (603)
++-+-+...++..+|.+|...+.++.+.+.. =. +|++..|+..+.++ +.|+.
T Consensus 123 ~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~G 202 (239)
T COG1579 123 EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGG 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccC
Confidence 3334444455566666666666666555432 22 35666777776662 27776
Q ss_pred cc
Q 007451 589 CW 590 (603)
Q Consensus 589 ~~ 590 (603)
|-
T Consensus 203 C~ 204 (239)
T COG1579 203 CH 204 (239)
T ss_pred Ce
Confidence 63
No 38
>PRK14136 recX recombination regulator RecX; Provisional
Probab=25.26 E-value=54 Score=35.00 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 97 YHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 97 ~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
..-+.|||..++|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 356899999999999988877763
No 39
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.05 E-value=2e+02 Score=29.72 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCchH-----HHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHhHHHHHHHH
Q 007451 508 FHPCWERLQRLEELVTDLVNKPKRIPPEK-----EDMLLESLSRIKSIEHDLQRTK-------KALLATASKQVELAESL 575 (603)
Q Consensus 508 ~~~~~kRl~eLEekv~~L~~KP~~mP~EK-----Ee~L~aa~~Rv~~lE~eL~~TK-------KaL~~tl~kQ~El~ayi 575 (603)
-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 45666666666665 233345454533 3445666777777776665544 45666666666676666
Q ss_pred HHhhh
Q 007451 576 EQLKE 580 (603)
Q Consensus 576 e~~k~ 580 (603)
+..|.
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 40
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=23.48 E-value=1.9e+02 Score=28.92 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007451 505 NQSFHPCWERLQRLEELVTDLVNKPKRIP----PEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKE 580 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP----~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~ 580 (603)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|..-|+||.++--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988853332 34467788999999999999999999999998888888888887663
No 41
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.20 E-value=1e+02 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 007451 535 EKEDMLLESLSRIKSIEHDLQRTKKALLATASK 567 (603)
Q Consensus 535 EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~k 567 (603)
|=|..||.|+.|-=-||.||+. |..|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999976 8888877754
No 42
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=23.16 E-value=5.2e+02 Score=28.86 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcc------h
Q 007451 158 KEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFG------K 231 (603)
Q Consensus 158 k~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~------~ 231 (603)
.+..|++++-.|-..- +.+.|+++++....+ . .--++|++-.|++-..+. .
T Consensus 122 ~~~~P~vvilpGltg~-------S~~~YVr~lv~~a~~---~-------------G~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTGG-------SHESYVRHLVHEAQR---K-------------GYRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCcEEEEecCCCCC-------ChhHHHHHHHHHHHh---C-------------CcEEEEECCCCCCCCccCCCceeec
Confidence 4567999999988553 457899888743321 1 245788899997665543 1
Q ss_pred hHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHH
Q 007451 232 VAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTA 271 (603)
Q Consensus 232 ~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lV 271 (603)
....-++.+++.+...||.+ ++|.+--+.+-.++||-+
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 22456788899999999998 899999988888888654
No 43
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.13 E-value=2.9e+02 Score=30.86 Aligned_cols=55 Identities=25% Similarity=0.449 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcC--CCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVN--KPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKAL 561 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~--KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL 561 (603)
++..+-++|.+|+..+..|.. ++..+|+++.++++........|..+|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777766665 4667889999888887777777777666555443
No 44
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.28 E-value=1.3e+02 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHH
Q 007451 534 PEKEDMLLESLSRIKSIEHD-------LQRTKKALLAT 564 (603)
Q Consensus 534 ~EKEe~L~aa~~Rv~~lE~e-------L~~TKKaL~~t 564 (603)
.||-+||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999865 56666665544
No 45
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.55 E-value=2.2e+02 Score=27.85 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 007451 506 QSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDML----LESLSRIKSIEHDLQRTKKALLATASKQVE 570 (603)
Q Consensus 506 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L----~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~E 570 (603)
..+..++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-|
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~~ 185 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34678889999999999998887655544444332 222333455555555533332 35555543
No 46
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.44 E-value=2.3e+02 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 007451 509 HPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASK 567 (603)
Q Consensus 509 ~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~k 567 (603)
...-+|+.+.|..+..+...-.+ =..+=....+.+.+|+.|-..|.++...|++++.-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~e-rqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVE-RQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998888765331 13444566789999999999999999999988654
No 47
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.36 E-value=2.2e+02 Score=26.83 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 007451 511 CWERLQRLEELVTDLVNKPKRIP-PEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQL 578 (603)
Q Consensus 511 ~~kRl~eLEekv~~L~~KP~~mP-~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~ 578 (603)
++..-..+|..++.| |.+. .|.+++ .||+.||.|+...-+-|.+++.+=++|++-|+..
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q~-----~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQL-----KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666 3343 343333 8999999999999999999999999999988765
No 48
>smart00353 HLH helix loop helix domain.
Probab=20.65 E-value=2.7e+02 Score=20.83 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHHHHhhHHHHH
Q 007451 532 IPPEKEDMLLESLSRIKSIEHDLQ 555 (603)
Q Consensus 532 mP~EKEe~L~aa~~Rv~~lE~eL~ 555 (603)
-..+|-.+|..|++=|+.|+.+++
T Consensus 29 ~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 29 KKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999988764
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.41 E-value=2e+02 Score=32.69 Aligned_cols=75 Identities=12% Similarity=0.268 Sum_probs=55.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007451 505 NQSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKE 580 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~ 580 (603)
.+.++.....+++|+++...|..+=.+.=...++ ++..-.|+..++.++...+..|++...+..+|-+=|++.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888887765544344444 77788999999999999999988877776777666666553
No 50
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.34 E-value=6.8e+02 Score=25.55 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=39.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007451 505 NQSFHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKAL 561 (603)
Q Consensus 505 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL 561 (603)
...+..+-.+.++||++...--.+-. |++-..++.|+..||..+...+..+
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888999998877666655 9999999999998887766555444
No 51
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=20.25 E-value=1.7e+02 Score=28.65 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007451 90 LPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (603)
Q Consensus 90 Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 121 (603)
+|....+.+-+.|||..++|+.+-+...|...
T Consensus 133 ~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 133 KPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444445789999999999999888777653
Done!