Query 007451
Match_columns 603
No_of_seqs 311 out of 1533
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 02:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 4.2E-55 1.4E-59 459.2 19.1 274 59-336 26-306 (320)
2 1aua_A Phosphatidylinositol tr 100.0 2.6E-54 8.8E-59 446.9 21.2 270 61-334 19-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 5.8E-46 2E-50 400.4 22.6 248 61-315 1-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 3.2E-44 1.1E-48 375.8 19.0 234 65-314 48-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 7E-44 2.4E-48 361.2 17.7 228 70-313 5-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 1.5E-10 5E-15 117.6 8.2 128 154-303 16-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 3.1E-09 1E-13 109.6 6.0 128 154-303 35-163 (290)
8 2hy6_A General control protein 72.3 0.96 3.3E-05 31.0 0.5 16 513-528 1-16 (34)
9 3c3f_A Alpha/beta peptide with 71.6 5.4 0.00018 27.3 4.0 15 513-527 1-15 (34)
10 2bni_A General control protein 71.0 3.6 0.00012 28.2 3.1 16 513-528 1-16 (34)
11 1uo4_A General control protein 70.4 4.3 0.00015 27.9 3.3 15 513-527 1-15 (34)
12 2wq1_A General control protein 70.3 6 0.00021 26.9 4.0 14 514-527 1-14 (33)
13 3c3g_A Alpha/beta peptide with 69.6 1.3 4.4E-05 30.2 0.7 14 514-527 1-14 (33)
14 2oxj_A Hybrid alpha/beta pepti 68.1 5.3 0.00018 27.4 3.4 15 513-527 1-15 (34)
15 3m48_A General control protein 66.3 5.4 0.00018 27.2 3.2 13 514-526 1-13 (33)
16 1kd8_A GABH AIV, GCN4 acid bas 63.3 8.6 0.0003 26.7 3.8 14 513-526 1-14 (36)
17 1nkp_A C-MYC, MYC proto-oncoge 63.1 41 0.0014 27.9 8.9 67 513-579 16-86 (88)
18 1nkp_B MAX protein, MYC proto- 61.1 37 0.0013 27.6 8.2 65 513-577 12-79 (83)
19 1kd8_B GABH BLL, GCN4 acid bas 57.8 18 0.0006 25.1 4.5 16 513-528 1-16 (36)
20 3a8y_C BAG family molecular ch 56.0 23 0.00078 32.2 6.4 67 507-580 35-110 (142)
21 2r2v_A GCN4 leucine zipper; co 53.2 19 0.00064 24.7 4.0 16 513-528 1-16 (34)
22 1wgl_A TOLL-interacting protei 52.7 14 0.00048 28.5 3.9 39 74-120 10-48 (59)
23 1m62_A BAG-family molecular ch 48.8 38 0.0013 28.3 6.2 65 507-578 12-85 (87)
24 2dhy_A CUE domain-containing p 44.6 24 0.00082 28.0 4.2 42 72-121 17-58 (67)
25 2dam_A ETEA protein; KIAA0887, 41.6 73 0.0025 25.0 6.6 44 69-120 14-57 (67)
26 1ugo_A BCL2-associated athanog 41.6 39 0.0014 28.9 5.3 65 507-578 19-92 (99)
27 3htk_A Structural maintenance 41.0 97 0.0033 23.3 7.1 45 536-580 10-54 (60)
28 3rrk_A V-type ATPase 116 kDa s 39.6 67 0.0023 32.8 8.0 65 515-579 198-268 (357)
29 1uk5_A BAG-family molecular ch 38.0 61 0.0021 28.2 6.1 67 506-579 30-105 (111)
30 1m7k_A Silencer of death domai 36.7 69 0.0024 27.3 6.1 65 506-577 24-97 (99)
31 1ic2_A Tropomyosin alpha chain 35.6 80 0.0027 25.5 6.2 59 508-570 15-73 (81)
32 1yke_B RNA polymerase II holoe 33.2 2E+02 0.007 26.1 9.2 68 504-579 51-126 (151)
33 2oqq_A Transcription factor HY 33.0 17 0.00057 26.2 1.3 15 512-526 16-30 (42)
34 2dal_A Protein KIAA0794; FAS a 32.6 92 0.0032 23.9 5.8 40 70-118 12-51 (62)
35 1ykh_B RNA polymerase II holoe 31.3 2.6E+02 0.0088 24.8 9.3 67 504-578 51-125 (132)
36 1ufz_A Hypothetical protein BA 31.0 71 0.0024 26.4 5.0 41 74-121 35-75 (83)
37 1v92_A NSFL1 cofactor P47; 3-h 29.7 81 0.0028 22.2 4.7 37 73-118 5-41 (46)
38 1otr_A Protein CUE2; protein-p 26.6 1E+02 0.0035 22.8 4.8 39 75-121 6-44 (49)
39 1pl5_A Regulatory protein SIR4 26.1 87 0.003 27.0 4.9 40 545-584 95-134 (142)
40 3hf0_A GCN4-PLI SIDE chain seq 25.2 1.3E+02 0.0044 19.9 4.4 28 536-563 6-33 (34)
41 1hlo_A Protein (transcription 24.0 93 0.0032 25.0 4.6 47 513-559 22-71 (80)
42 2ql2_B Neurod1, neurogenic dif 23.9 95 0.0032 23.8 4.4 43 513-555 12-58 (60)
43 1z96_A DNA-damage, UBA-domain 23.9 97 0.0033 21.0 4.1 21 98-118 19-39 (40)
44 2ke4_A CDC42-interacting prote 23.8 90 0.0031 26.5 4.6 46 518-564 41-88 (98)
45 1nyh_A Regulatory protein SIR4 23.6 1E+02 0.0035 27.2 5.0 40 545-584 119-158 (166)
46 2q9q_C DNA replication complex 22.7 1.8E+02 0.0063 27.3 7.2 32 527-558 16-47 (196)
47 1wr1_B Ubiquitin-like protein 22.1 1.4E+02 0.0049 22.7 5.0 38 74-120 18-55 (58)
48 2di0_A Activating signal coint 22.0 2E+02 0.0069 23.0 6.0 43 70-120 10-52 (71)
49 2l5g_B Putative uncharacterize 21.8 1.5E+02 0.005 21.4 4.5 36 535-574 3-38 (42)
50 3u1c_A Tropomyosin alpha-1 cha 21.7 1.5E+02 0.0052 25.0 5.7 56 511-570 21-76 (101)
51 3etw_A Adhesin A; antiparallel 21.6 1.5E+02 0.005 26.1 5.6 73 509-581 5-107 (119)
52 2z5i_I TM, tropomyosin alpha-1 21.2 62 0.0021 23.1 2.5 20 541-560 20-39 (40)
53 4aya_A DNA-binding protein inh 21.0 1.3E+02 0.0044 25.6 4.9 45 512-556 34-82 (97)
54 1nlw_A MAD protein, MAX dimeri 20.8 3.3E+02 0.011 21.9 8.5 64 513-576 11-78 (80)
55 1vej_A Riken cDNA 4931431F19; 20.3 1.6E+02 0.0054 23.7 5.2 38 74-120 30-67 (74)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4.2e-55 Score=459.15 Aligned_cols=274 Identities=34% Similarity=0.606 Sum_probs=247.5
Q ss_pred cccccccccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccch
Q 007451 59 RCAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFV 138 (603)
Q Consensus 59 ~~~~~~ied~~d~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~I~~d~~ 138 (603)
..+++...++ +++|+++|++||+||.++++ +...|| .+||||||||+||+++|.+||.++++||+++++|.+..++.
T Consensus 26 ~~~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~ 102 (320)
T 3q8g_A 26 NALPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYE 102 (320)
T ss_dssp TSCTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 4455555555 78899999999999999884 556666 69999999999999999999999999999999998887655
Q ss_pred hh------hHhhhhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCcc
Q 007451 139 YE------EYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHI 212 (603)
Q Consensus 139 ~~------el~~v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i 212 (603)
++ +...+.++++++++|+|++||||+|+++|++|+.++++.++.+++++++++.+|.++...+|.|+...+..+
T Consensus 103 ~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~v 182 (320)
T 3q8g_A 103 NNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLI 182 (320)
T ss_dssp HTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCC
T ss_pred cccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCc
Confidence 44 344577889999999999999999999999999988777789999999999999998877788888777889
Q ss_pred CcEEEEEeCCCCCcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchH
Q 007451 213 DSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHD 292 (603)
Q Consensus 213 ~g~tvIiDl~Gvsl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~ 292 (603)
+++++|+|++|+++++++.. +.+++.+++++|+|||+||+++||||+|++|+++|++|+|||+++|++||+|+++++.+
T Consensus 183 e~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~ 261 (320)
T 3q8g_A 183 ETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKK 261 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHH
T ss_pred ceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHH
Confidence 99999999999999998753 78899999999999999999999999999999999999999999999999999988889
Q ss_pred HHHccCCCCCCCccCCCCCCCCC-CCCcccCCCCCCCChhhhhhh
Q 007451 293 KLLEVIDSSQLPDFLGGTCSCPN-EGGCLKSNKGPWSDPGIMKLV 336 (603)
Q Consensus 293 ~Lle~Id~d~LP~eyGGt~~~~~-~~gcl~~~~gpw~dp~i~k~v 336 (603)
.|.++||+++||++|||+++|++ +|||+.+|.|||+||+|++.-
T Consensus 262 ~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~~ 306 (320)
T 3q8g_A 262 ELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPE 306 (320)
T ss_dssp HHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCTT
T ss_pred HHHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCCC
Confidence 99999999999999999999987 799999999999999998643
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.6e-54 Score=446.90 Aligned_cols=270 Identities=38% Similarity=0.645 Sum_probs=243.6
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccchhh
Q 007451 61 APISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYE 140 (603)
Q Consensus 61 ~~~~ied~~d~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~I~~d~~~~ 140 (603)
+++...++ +++|+++|++||+||.+++ ++...|| .+|+|||||++||+++|.+||.++++||++++++.+..++...
T Consensus 19 ~~~~~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGNL-DSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccC
Confidence 33444444 6778999999999999887 4666666 6999999999999999999999999999999998887665544
Q ss_pred hHhhhhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEe
Q 007451 141 EYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILD 220 (603)
Q Consensus 141 el~~v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiD 220 (603)
+...+.++++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.++...+|+|+...+.+++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred cHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 44456678898899999999999999999999998888889999999999999999988778888877788999999999
Q ss_pred CCCCCcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCC
Q 007451 221 VQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDS 300 (603)
Q Consensus 221 l~Gvsl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~ 300 (603)
++|++++|++.. +.+++.+++++|+|||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+
T Consensus 176 ~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 254 (296)
T 1aua_A 176 LKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPA 254 (296)
T ss_dssp CTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCS
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCH
Confidence 999999998754 7889999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCCccCCCCCCCCC-CCCcccCCCCCCCChhhhh
Q 007451 301 SQLPDFLGGTCSCPN-EGGCLKSNKGPWSDPGIMK 334 (603)
Q Consensus 301 d~LP~eyGGt~~~~~-~~gcl~~~~gpw~dp~i~k 334 (603)
++||++|||+++|++ ++||+.++.|||++|++++
T Consensus 255 ~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 255 ENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 999999999999986 7899999999999999975
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=5.8e-46 Score=400.41 Aligned_cols=248 Identities=27% Similarity=0.440 Sum_probs=218.1
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccchh
Q 007451 61 APISIEDVRDAAEEKAVNGFRNALIARD-MLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVY 139 (603)
Q Consensus 61 ~~~~ied~~d~~E~~~V~~LRe~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~I~~d~~~ 139 (603)
|++...++ +++|+++|++||++|.... ++| ..+| .+|||||||++||+++|.+||.++++||++++++.+.....
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~- 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQP- 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCC-
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCC-
Confidence 44555555 7889999999999998874 455 3455 69999999999999999999999999999999988765322
Q ss_pred hhHhhhhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEE
Q 007451 140 EEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITIL 219 (603)
Q Consensus 140 ~el~~v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIi 219 (603)
+ +.+..+++++++|+|++||||+|+++|++|+.++++..+.+++++++++.+|.++... +.++...+.++.++++|+
T Consensus 77 ~--~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 P--EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIY 153 (403)
T ss_dssp C--HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEE
T ss_pred H--HHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEE
Confidence 2 2355678888999999999999999999999987777799999999999999998864 334444556799999999
Q ss_pred eCCCCCcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCC
Q 007451 220 DVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVID 299 (603)
Q Consensus 220 Dl~Gvsl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id 299 (603)
|++|++++++++..+.+++.+++++|+|||+||+++||||+|++|.++|++|||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998878899999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCccCCCCCCCCC
Q 007451 300 SSQLPDFLGGTCSCPN 315 (603)
Q Consensus 300 ~d~LP~eyGGt~~~~~ 315 (603)
+++||++|||++++++
T Consensus 234 ~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGGSBGGGTSSBCCTT
T ss_pred hhhCchhhCCCcCCCC
Confidence 9999999999998853
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.2e-44 Score=375.76 Aligned_cols=234 Identities=20% Similarity=0.341 Sum_probs=196.9
Q ss_pred cccCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCC
Q 007451 65 IEDVRDAAE--EKAVNGFRNALIARDMLP-----------SRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVD 131 (603)
Q Consensus 65 ied~~d~~E--~~~V~~LRe~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d 131 (603)
.+++++..+ +++|++||+||.++++++ .++|| .+|+|||||++||+++|.+||.+|++||++++.
T Consensus 48 ~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~- 125 (316)
T 3hx3_A 48 KDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE- 125 (316)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch-
Confidence 455554333 689999999999999874 34455 699999999999999999999999999999983
Q ss_pred cccccchhhhHhh-hhcccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcC
Q 007451 132 TIMQDFVYEEYDE-VQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKR 210 (603)
Q Consensus 132 ~I~~d~~~~el~~-v~~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~ 210 (603)
+..+..++++.. +...++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++... ..
T Consensus 126 -~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~~--------~~ 192 (316)
T 3hx3_A 126 -LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLENE--------ET 192 (316)
T ss_dssp -GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTSH--------HH
T ss_pred -hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhcc--------cC
Confidence 223333344433 33456667889999999999999999999886 78999999999999988642 34
Q ss_pred ccCcEEEEEeCCCCCcCCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcc
Q 007451 211 HIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKF 290 (603)
Q Consensus 211 ~i~g~tvIiDl~Gvsl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~ 290 (603)
++.|+++|+|++|++++|++......++.+++++|+|||++|+++||||+|++|.++|++|||||+++|++||+|+++++
T Consensus 193 ~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~ 272 (316)
T 3hx3_A 193 QINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL 272 (316)
T ss_dssp HHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC
T ss_pred CcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH
Confidence 68899999999999999986555778999999999999999999999999999999999999999999999999998765
Q ss_pred hHHHHccCCCCCCCccCCCCCCCC
Q 007451 291 HDKLLEVIDSSQLPDFLGGTCSCP 314 (603)
Q Consensus 291 ~~~Lle~Id~d~LP~eyGGt~~~~ 314 (603)
+.|.++||+++||++|||++++.
T Consensus 273 -~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 273 -SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp -HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred -HHHHhhCCHhhCcHhhCCCCCCc
Confidence 79999999999999999999864
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=7e-44 Score=361.18 Aligned_cols=228 Identities=21% Similarity=0.340 Sum_probs=192.6
Q ss_pred CHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccchhhhHhhh-h
Q 007451 70 DAAEEKAVNGFRNALIARD--MLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEV-Q 146 (603)
Q Consensus 70 d~~E~~~V~~LRe~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~l~WRk~~~~d~I~~d~~~~el~~v-~ 146 (603)
++.|+++|++||+++.+.+ ++|...+| .+|+|||||++||+++|.+||.++++||++++. +..+..++++... .
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 5678889999999999875 45666666 699999999999999999999999999999862 2222222333222 2
Q ss_pred cccccccccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCc
Q 007451 147 SCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNW 226 (603)
Q Consensus 147 ~~~p~~~~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl 226 (603)
..+..+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++... ..++.|+++|+|++|+++
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCCH
Confidence 334455789999999999999999999875 77899999999999887642 224679999999999999
Q ss_pred CCcchhHHHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHHHhhcCChhhhcceEEcCCcchHHHHccCCCCCCCcc
Q 007451 227 MSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDF 306 (603)
Q Consensus 227 ~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~LP~e 306 (603)
+|+++.....++.+++++|+|||++|+++||||+|++|+++|++|+|||+++|++||+|+++++.+.|.++|| ++||++
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~ 228 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 228 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHh
Confidence 9987666789999999999999999999999999999999999999999999999999999888899999999 999999
Q ss_pred CCCCCCC
Q 007451 307 LGGTCSC 313 (603)
Q Consensus 307 yGGt~~~ 313 (603)
|||++..
T Consensus 229 yGG~~~~ 235 (262)
T 1r5l_A 229 YGGEEFS 235 (262)
T ss_dssp GTCSSCC
T ss_pred hCCCCCC
Confidence 9999854
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.08 E-value=1.5e-10 Score=117.58 Aligned_cols=128 Identities=12% Similarity=0.126 Sum_probs=107.3
Q ss_pred ccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhH
Q 007451 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (603)
Q Consensus 154 ~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~ 233 (603)
.|.|++||||+++...+++...+ +.+.++.|++..++.... ....+|+|+.|++..+.+ .
T Consensus 16 ~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~~~n~p--~ 75 (256)
T 3pg7_A 16 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF--K 75 (256)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC--C
T ss_pred cCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCCcccCC--c
Confidence 48999999999999999987664 788888777776665432 468999999999987765 3
Q ss_pred HHHHHHHHHhhcccccccccEEEEEeCChhHHHHHHH-HhhcCChhhhcceEEcCCcchHHHHccCCCCCC
Q 007451 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNT-AKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL 303 (603)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW~l-VKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~L 303 (603)
..+++.+..++...|...|+++||+|++++|+..|.. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 7889999999999999999999999999999977665 456666688889999976 6899999987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.81 E-value=3.1e-09 Score=109.64 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=97.2
Q ss_pred ccCCCCCCeEEEEEcCcCCcCCccccccHHHHHHHHHHHHHHHHhhhcccchhhhcCccCcEEEEEeCCCCCcCCcchhH
Q 007451 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (603)
Q Consensus 154 ~G~Dk~GRPV~i~rlgk~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~p~cs~~~~~~i~g~tvIiDl~Gvsl~~~~~~~ 233 (603)
.|.|++||||+++.+++++...+ +.+.++-|++..++.... ....+|+|+.|++..+-+ .
T Consensus 35 ~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~p--~ 94 (290)
T 3peg_A 35 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF--K 94 (290)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC--C
T ss_pred eccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCCC--h
Confidence 48899999999999999987665 777777666666654432 478999999999987654 3
Q ss_pred HHHHHHHHHhhcccccccccEEEEEeCChhHHHHH-HHHhhcCChhhhcceEEcCCcchHHHHccCCCCCC
Q 007451 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVW-NTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL 303 (603)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lW-~lVKpFLdpkT~~KI~~l~~~~~~~Lle~Id~d~L 303 (603)
.++++.+..++...|+..++++||+|++++|+..+ ...++|...+...|+.+++. ...|..+++++++
T Consensus 95 ~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 95 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 78899999999999999999999999999998754 56678888888899999876 3558899987654
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.28 E-value=0.96 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 007451 513 ERLQRLEELVTDLVNK 528 (603)
Q Consensus 513 kRl~eLEekv~~L~~K 528 (603)
+||..||+||.+|-++
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 5888999999887643
No 9
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=71.58 E-value=5.4 Score=27.29 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 007451 513 ERLQRLEELVTDLVN 527 (603)
Q Consensus 513 kRl~eLEekv~~L~~ 527 (603)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999988754
No 10
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.95 E-value=3.6 Score=28.22 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 007451 513 ERLQRLEELVTDLVNK 528 (603)
Q Consensus 513 kRl~eLEekv~~L~~K 528 (603)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 11
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.43 E-value=4.3 Score=27.88 Aligned_cols=15 Identities=13% Similarity=0.508 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcC
Q 007451 513 ERLQRLEELVTDLVN 527 (603)
Q Consensus 513 kRl~eLEekv~~L~~ 527 (603)
.||..||+||.+|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388999999987743
No 12
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=70.33 E-value=6 Score=26.93 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 007451 514 RLQRLEELVTDLVN 527 (603)
Q Consensus 514 Rl~eLEekv~~L~~ 527 (603)
||..||+||.+|-+
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 78899999987754
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=69.59 E-value=1.3 Score=30.16 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcC
Q 007451 514 RLQRLEELVTDLVN 527 (603)
Q Consensus 514 Rl~eLEekv~~L~~ 527 (603)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78899999988754
No 14
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.10 E-value=5.3 Score=27.40 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcC
Q 007451 513 ERLQRLEELVTDLVN 527 (603)
Q Consensus 513 kRl~eLEekv~~L~~ 527 (603)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~kVEeLl~ 15 (34)
T 2oxj_A 1 XRMXQLEXKVXELLX 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 589999999988854
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.34 E-value=5.4 Score=27.24 Aligned_cols=13 Identities=38% Similarity=0.670 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhc
Q 007451 514 RLQRLEELVTDLV 526 (603)
Q Consensus 514 Rl~eLEekv~~L~ 526 (603)
||..||+||.+|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 7888999998774
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.34 E-value=8.6 Score=26.67 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhc
Q 007451 513 ERLQRLEELVTDLV 526 (603)
Q Consensus 513 kRl~eLEekv~~L~ 526 (603)
+||..||.||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 57888888887764
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.08 E-value=41 Score=27.88 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 007451 513 ERLQRLEELVTDLVNKPKRIP----PEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLK 579 (603)
Q Consensus 513 kRl~eLEekv~~L~~KP~~mP----~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k 579 (603)
+|-..|=+.+..|..==|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.++
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677788888888877666565 5899999999999999998877665555555567777777776654
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.13 E-value=37 Score=27.56 Aligned_cols=65 Identities=8% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007451 513 ERLQRLEELVTDLVNKPKRIP---PEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQ 577 (603)
Q Consensus 513 kRl~eLEekv~~L~~KP~~mP---~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~ 577 (603)
+|...|=+.+..|..=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|..
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888876544332 48999999999999999988877666665555555555555543
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.82 E-value=18 Score=25.13 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 007451 513 ERLQRLEELVTDLVNK 528 (603)
Q Consensus 513 kRl~eLEekv~~L~~K 528 (603)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5889999999887543
No 20
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=56.01 E-value=23 Score=32.21 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKE-----DMLLESLSRIKSIEHD----LQRTKKALLATASKQVELAESLEQ 577 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~lE~e----L~~TKKaL~~tl~kQ~El~ayie~ 577 (603)
.+..+..++++|+.+|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++||.
T Consensus 35 aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD~ 107 (142)
T 3a8y_C 35 AVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLDL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 5778899999999999999777 57785 7899999999999887 4455554 44444567788877
Q ss_pred hhh
Q 007451 578 LKE 580 (603)
Q Consensus 578 ~k~ 580 (603)
++.
T Consensus 108 k~~ 110 (142)
T 3a8y_C 108 KSD 110 (142)
T ss_dssp HHC
T ss_pred hhH
Confidence 553
No 21
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.18 E-value=19 Score=24.73 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 007451 513 ERLQRLEELVTDLVNK 528 (603)
Q Consensus 513 kRl~eLEekv~~L~~K 528 (603)
+||..||.||.+|.+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4889999999888654
No 22
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.73 E-value=14 Score=28.54 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 74 ~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
++.|+.|++.. |. .+. ..+-.-|++++.|++.|+.+|.+
T Consensus 10 ee~l~~L~emF------P~-ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------PN-MDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------SS-SCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 35677777765 43 244 58999999999999999999875
No 23
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=48.78 E-value=38 Score=28.28 Aligned_cols=65 Identities=28% Similarity=0.416 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEKE-----DMLLESLSRIKSIEHD----LQRTKKALLATASKQVELAESLEQ 577 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~lE~e----L~~TKKaL~~tl~kQ~El~ayie~ 577 (603)
-+..+...+.+|+..|+....| +.||| |||.--+=.+|+||.| +-..+|+. +-+=.-++++||.
T Consensus 12 ~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~LD~ 84 (87)
T 1m62_A 12 KIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKLEK 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 5778889999999999999987 56774 7899999999999887 55555543 3333456666665
Q ss_pred h
Q 007451 578 L 578 (603)
Q Consensus 578 ~ 578 (603)
+
T Consensus 85 k 85 (87)
T 1m62_A 85 K 85 (87)
T ss_dssp H
T ss_pred c
Confidence 3
No 24
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.56 E-value=24 Score=28.00 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007451 72 AEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (603)
Q Consensus 72 ~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 121 (603)
+..++++.|++.. |. -|...+..-|+++++|++.|++.|.++
T Consensus 17 ~~~~~v~~L~~MF------P~--lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMF------PN--MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHC------SS--SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC------CC--CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3467788888875 43 233578899999999999999988765
No 25
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.59 E-value=73 Score=24.98 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 69 RDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 69 ~d~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
+...+...|.+|...-. ..|......||...+||++.|+..+-+
T Consensus 14 Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 14 LTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35667778888887762 123457899999999999999987643
No 26
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=41.56 E-value=39 Score=28.86 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCchH-----HHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Q 007451 507 SFHPCWERLQRLEELVTDLVNKPKRIPPEK-----EDMLLESLSRIKSIEHD----LQRTKKALLATASKQVELAESLEQ 577 (603)
Q Consensus 507 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EK-----Ee~L~aa~~Rv~~lE~e----L~~TKKaL~~tl~kQ~El~ayie~ 577 (603)
.+..+...+.+|+..|.....|+ .|| +|||.--+=.+|+||.| +-..+|+ ++-+=.-++++||+
T Consensus 19 kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD~ 91 (99)
T 1ugo_A 19 RLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELEQ 91 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 57788889999999999998887 466 48888888999999876 3334443 33333456666666
Q ss_pred h
Q 007451 578 L 578 (603)
Q Consensus 578 ~ 578 (603)
+
T Consensus 92 k 92 (99)
T 1ugo_A 92 N 92 (99)
T ss_dssp H
T ss_pred c
Confidence 4
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.03 E-value=97 Score=23.25 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007451 536 KEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLEQLKE 580 (603)
Q Consensus 536 KEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~ 580 (603)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555688889999999999999999999999999988864
No 28
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=39.55 E-value=67 Score=32.80 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCCCCCch-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-HHHHHHHHHHhh
Q 007451 515 LQRLEELVTDLVNKPKRIPPE-----KEDMLLESLSRIKSIEHDLQRTKKALLATASK-QVELAESLEQLK 579 (603)
Q Consensus 515 l~eLEekv~~L~~KP~~mP~E-----KEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~k-Q~El~ayie~~k 579 (603)
.+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+...
T Consensus 198 ~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~ 268 (357)
T 3rrk_A 198 LEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAK 268 (357)
T ss_dssp HHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888889853 35888888899999999999999999998888 666766665554
No 29
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=37.99 E-value=61 Score=28.24 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=49.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 007451 506 QSFHPCWERLQRLEELVTDLVNKPKRIPPEKE-----DMLLESLSRIKSIEHD----LQRTKKALLATASKQVELAESLE 576 (603)
Q Consensus 506 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~lE~e----L~~TKKaL~~tl~kQ~El~ayie 576 (603)
..+..+...+.+|+..|+....|+ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++||
T Consensus 30 ~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~LD 102 (111)
T 1uk5_A 30 LKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKLE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 456777888899999999998875 6774 7899999999999887 5455554 3334455777777
Q ss_pred Hhh
Q 007451 577 QLK 579 (603)
Q Consensus 577 ~~k 579 (603)
.+.
T Consensus 103 ~k~ 105 (111)
T 1uk5_A 103 QKA 105 (111)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 30
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=36.70 E-value=69 Score=27.35 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 007451 506 QSFHPCWERLQRLEELVTDLVNKPKRIPPEKE-----DMLLESLSRIKSIEHD----LQRTKKALLATASKQVELAESLE 576 (603)
Q Consensus 506 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~Rv~~lE~e----L~~TKKaL~~tl~kQ~El~ayie 576 (603)
.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|+||.| +-..+|++ +-+=.-++++||
T Consensus 24 ~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~~LD 96 (99)
T 1m7k_A 24 KKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKLE 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHHh
Confidence 347888999999999999999874 6674 7899999999999887 55555543 333345666666
Q ss_pred H
Q 007451 577 Q 577 (603)
Q Consensus 577 ~ 577 (603)
.
T Consensus 97 ~ 97 (99)
T 1m7k_A 97 K 97 (99)
T ss_dssp H
T ss_pred c
Confidence 5
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.63 E-value=80 Score=25.55 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 007451 508 FHPCWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVE 570 (603)
Q Consensus 508 ~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~E 570 (603)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||.++.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655332 2456667777788999999999999999988877544
No 32
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.23 E-value=2e+02 Score=26.13 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=51.8
Q ss_pred ccchhhHHHHHH--------HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007451 504 ENQSFHPCWERL--------QRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESL 575 (603)
Q Consensus 504 ~~~~~~~~~kRl--------~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayi 575 (603)
+.+.|..-.++| +..|..++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666 6777777777 3322345444 58999999999999999999999999999988
Q ss_pred HHhh
Q 007451 576 EQLK 579 (603)
Q Consensus 576 e~~k 579 (603)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.00 E-value=17 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhc
Q 007451 512 WERLQRLEELVTDLV 526 (603)
Q Consensus 512 ~kRl~eLEekv~~L~ 526 (603)
=.|.+|||++|..|+
T Consensus 16 e~~naeLEervstLq 30 (42)
T 2oqq_A 16 ENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 34
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.59 E-value=92 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 007451 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMW 118 (603)
Q Consensus 70 d~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L 118 (603)
...+.+.|.+|...-. .+......||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556677888886531 123578999999999999999776
No 35
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.31 E-value=2.6e+02 Score=24.78 Aligned_cols=67 Identities=16% Similarity=0.355 Sum_probs=50.8
Q ss_pred ccchhhHHHHHH--------HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007451 504 ENQSFHPCWERL--------QRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESL 575 (603)
Q Consensus 504 ~~~~~~~~~kRl--------~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayi 575 (603)
+.+.|..-.++| +..|..++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 6777777777 3322345444 58999999999999999999999999999988
Q ss_pred HHh
Q 007451 576 EQL 578 (603)
Q Consensus 576 e~~ 578 (603)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 36
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=31.02 E-value=71 Score=26.41 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007451 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (603)
Q Consensus 74 ~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 121 (603)
...|+++|..|- +...| ..|.+-.-..+||+++|...+.+-
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 457888888873 23345 478888899999999999987643
No 37
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=29.65 E-value=81 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 007451 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMW 118 (603)
Q Consensus 73 E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L 118 (603)
+...|.+|...- + .+......||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iT---g------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT---G------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT---C------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh---C------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445677777543 1 123578999999999999998766
No 38
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=26.63 E-value=1e+02 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007451 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (603)
Q Consensus 75 ~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~~ 121 (603)
..++.|.+.. |.. |...+.+-|+++++|+++|+++|.+.
T Consensus 6 ~~v~~L~EMF------P~~--~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMF------PAI--SKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHC------SSS--CHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHC------CCC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4455555443 433 33578899999999999999998765
No 39
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=26.12 E-value=87 Score=26.97 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=31.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccc
Q 007451 545 SRIKSIEHDLQRTKKALLATASKQVELAESLEQLKENSIP 584 (603)
Q Consensus 545 ~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~k~~ 584 (603)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|.
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988878888888777766553
No 40
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=25.23 E-value=1.3e+02 Score=19.95 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 007451 536 KEDMLLESLSRIKSIEHDLQRTKKALLA 563 (603)
Q Consensus 536 KEe~L~aa~~Rv~~lE~eL~~TKKaL~~ 563 (603)
.|.-|.+.+....-.|.||.+.|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4666788889999999999999988865
No 41
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.96 E-value=93 Score=24.97 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHHHHhhHHHHHHHHH
Q 007451 513 ERLQRLEELVTDLVNKPKRIP---PEKEDMLLESLSRIKSIEHDLQRTKK 559 (603)
Q Consensus 513 kRl~eLEekv~~L~~KP~~mP---~EKEe~L~aa~~Rv~~lE~eL~~TKK 559 (603)
+|...|=+.+..|..--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655433333 47999999999999999988765543
No 42
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.87 E-value=95 Score=23.82 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHhhHHHHH
Q 007451 513 ERLQRLEELVTDLVNKPKRIPP----EKEDMLLESLSRIKSIEHDLQ 555 (603)
Q Consensus 513 kRl~eLEekv~~L~~KP~~mP~----EKEe~L~aa~~Rv~~lE~eL~ 555 (603)
+|+..|-+-+..|..--|.+|+ -|=+.|..|+.=|..|+.-|+
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999988777775 578999999999999987664
No 43
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.86 E-value=97 Score=20.98 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 007451 98 HTMLRFLKARKFDIDKTFQMW 118 (603)
Q Consensus 98 ~~LLRFLrArkfDvekA~~~L 118 (603)
....+-|++.++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 44
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.81 E-value=90 Score=26.46 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCC--CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007451 518 LEELVTDLVNKPKRI--PPEKEDMLLESLSRIKSIEHDLQRTKKALLAT 564 (603)
Q Consensus 518 LEekv~~L~~KP~~m--P~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~t 564 (603)
|+.+..+....|. | |.--|.-|+++-.+|+.|+.||-+-...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666 6 77779999999999999999999988888776
No 45
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=23.63 E-value=1e+02 Score=27.17 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccc
Q 007451 545 SRIKSIEHDLQRTKKALLATASKQVELAESLEQLKENSIP 584 (603)
Q Consensus 545 ~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie~~k~~k~~ 584 (603)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|.
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988888888888877766554
No 46
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=22.72 E-value=1.8e+02 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhHHHHHHHH
Q 007451 527 NKPKRIPPEKEDMLLESLSRIKSIEHDLQRTK 558 (603)
Q Consensus 527 ~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TK 558 (603)
+-|.++||=.++++..-+.+|+.+++++.+..
T Consensus 16 ~~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~ 47 (196)
T 2q9q_C 16 APEGQLPAFNEDGLRQVLEEMKALYEQNQSDV 47 (196)
T ss_dssp SCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33337888888888888888888888776544
No 47
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.13 E-value=1.4e+02 Score=22.70 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 74 ~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
+..|++|++. + +.|.+.-++=|++.++|+++|++.|-.
T Consensus 18 ~~qi~~L~~M----G-----F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM----G-----FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH----T-----CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566666655 2 234456799999999999999988754
No 48
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.04 E-value=2e+02 Score=22.97 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 70 d~~E~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
..+-...|.++++.+ |+. .+ .++.+.|..+++|+|.++..|-+
T Consensus 10 ~~~l~s~I~qV~DLf------PdL-G~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PDL-GE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CSS-CH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------ccC-CH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 344567777777765 543 44 48999999999999999988864
No 49
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.79 E-value=1.5e+02 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 007451 535 EKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAES 574 (603)
Q Consensus 535 EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ay 574 (603)
-|||+|+. +.||| .|.++|.+=+.+-=.||.||-+.
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47787763 55555 79999998888888888887653
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.71 E-value=1.5e+02 Score=25.00 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 007451 511 CWERLQRLEELVTDLVNKPKRIPPEKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVE 570 (603)
Q Consensus 511 ~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~E 570 (603)
.+.|...+|.++..+..+-. .+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~~----~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSK----QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655544322 356666666678999999999988888888665444
No 51
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.64 E-value=1.5e+02 Score=26.14 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCC--------------chHHHHHHHHHHHHHhhH----------------HHHHHHH
Q 007451 509 HPCWERLQRLEELVTDLVNKPKRIP--------------PEKEDMLLESLSRIKSIE----------------HDLQRTK 558 (603)
Q Consensus 509 ~~~~kRl~eLEekv~~L~~KP~~mP--------------~EKEe~L~aa~~Rv~~lE----------------~eL~~TK 558 (603)
.+++-||..||..+..|..+-.++= .+.++|.+.--.|+.-|+ .++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 4556666666666666655433321 122344444445555554 3678889
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhc
Q 007451 559 KALLATASKQVELAESLEQLKEN 581 (603)
Q Consensus 559 KaL~~tl~kQ~El~ayie~~k~~ 581 (603)
|.|++-+.+|++++.+-|+-|.-
T Consensus 85 keLd~~ik~qekiIdnFE~ik~l 107 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887743
No 52
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=21.19 E-value=62 Score=23.11 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 007451 541 LESLSRIKSIEHDLQRTKKA 560 (603)
Q Consensus 541 ~aa~~Rv~~lE~eL~~TKKa 560 (603)
.+|++|.+.+|+++-.++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 53
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.04 E-value=1.3e+02 Score=25.60 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHhhHHHHHH
Q 007451 512 WERLQRLEELVTDLVNKPKRIPPE----KEDMLLESLSRIKSIEHDLQR 556 (603)
Q Consensus 512 ~kRl~eLEekv~~L~~KP~~mP~E----KEe~L~aa~~Rv~~lE~eL~~ 556 (603)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999998889987 789999999999998877653
No 54
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.83 E-value=3.3e+02 Score=21.88 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007451 513 ERLQRLEELVTDLVNKPKRIPP----EKEDMLLESLSRIKSIEHDLQRTKKALLATASKQVELAESLE 576 (603)
Q Consensus 513 kRl~eLEekv~~L~~KP~~mP~----EKEe~L~aa~~Rv~~lE~eL~~TKKaL~~tl~kQ~El~ayie 576 (603)
+|-.+|=..+..|..-=|.+|. -|=.+|..|++=|..|+.+-..-..-...--.+|++|-+-|+
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777665444432 368999999999999998887766666555555666666554
No 55
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.34 E-value=1.6e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 007451 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (603)
Q Consensus 74 ~~~V~~LRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~L~~ 120 (603)
+..|++|++.= +.|.+..++=|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44667776652 234456799999999999999987753
Done!