Query 007452
Match_columns 603
No_of_seqs 280 out of 1429
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 23:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 1.8E-30 3.9E-35 258.3 4.7 105 202-321 7-112 (238)
2 PLN03212 Transcription repress 100.0 5.4E-29 1.2E-33 248.9 7.5 120 177-319 7-126 (249)
3 PLN03091 hypothetical protein; 99.9 1.4E-27 3E-32 253.6 5.2 110 196-319 6-115 (459)
4 PF13921 Myb_DNA-bind_6: Myb-l 99.5 7.7E-15 1.7E-19 116.6 5.8 60 207-276 1-60 (60)
5 KOG0049 Transcription factor, 99.4 5.5E-14 1.2E-18 155.0 5.0 97 197-306 353-449 (939)
6 KOG0049 Transcription factor, 99.4 7.2E-14 1.6E-18 154.1 1.2 103 202-318 303-408 (939)
7 COG5147 REB1 Myb superfamily p 99.3 3.4E-13 7.4E-18 147.7 2.3 107 198-319 14-120 (512)
8 PF00249 Myb_DNA-binding: Myb- 99.3 2E-12 4.3E-17 99.4 2.9 45 204-250 1-46 (48)
9 KOG0050 mRNA splicing protein 99.2 2.7E-12 5.9E-17 139.2 -1.5 100 202-317 5-104 (617)
10 smart00717 SANT SANT SWI3, AD 99.0 3.5E-10 7.6E-15 83.5 4.2 46 204-251 1-46 (49)
11 KOG0051 RNA polymerase I termi 98.9 9.8E-10 2.1E-14 122.3 4.5 107 203-320 383-511 (607)
12 PLN03091 hypothetical protein; 98.9 1.5E-09 3.2E-14 117.1 5.3 72 197-273 60-134 (459)
13 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 2.2E-09 4.7E-14 78.3 3.9 43 206-250 1-43 (45)
14 PLN03212 Transcription repress 98.8 3E-09 6.6E-14 107.8 3.9 52 197-251 71-122 (249)
15 KOG0048 Transcription factor, 98.5 9E-08 2E-12 96.1 4.5 58 194-254 52-110 (238)
16 PF00249 Myb_DNA-binding: Myb- 98.5 1.1E-08 2.5E-13 78.6 -1.8 46 265-315 1-47 (48)
17 smart00717 SANT SANT SWI3, AD 98.4 8.3E-08 1.8E-12 70.7 0.8 47 265-317 1-48 (49)
18 PF13921 Myb_DNA-bind_6: Myb-l 98.2 1.7E-07 3.7E-12 74.5 -0.3 46 268-319 1-46 (60)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 5.3E-07 1.2E-11 65.6 0.6 43 267-315 1-44 (45)
20 TIGR01557 myb_SHAQKYF myb-like 98.0 6.3E-06 1.4E-10 67.0 4.9 50 202-252 1-54 (57)
21 COG5147 REB1 Myb superfamily p 97.8 6.5E-06 1.4E-10 91.4 1.9 105 202-317 289-397 (512)
22 KOG0457 Histone acetyltransfer 97.3 0.00014 3.1E-09 79.0 3.7 47 203-251 71-117 (438)
23 PF13837 Myb_DNA-bind_4: Myb/S 97.1 0.00028 6.1E-09 59.6 2.0 58 204-261 1-73 (90)
24 KOG0051 RNA polymerase I termi 96.8 0.0011 2.4E-08 75.0 4.0 108 202-318 434-569 (607)
25 COG5259 RSC8 RSC chromatin rem 96.2 0.0031 6.8E-08 69.5 2.9 46 203-251 278-323 (531)
26 KOG1279 Chromatin remodeling f 96.1 0.0045 9.8E-08 69.3 3.7 48 201-251 250-297 (506)
27 PF08914 Myb_DNA-bind_2: Rap1 95.6 0.0095 2.1E-07 49.9 2.9 45 204-250 2-55 (65)
28 KOG0050 mRNA splicing protein 95.5 0.014 3E-07 65.2 4.4 51 197-251 52-102 (617)
29 PF13873 Myb_DNA-bind_5: Myb/S 95.3 0.023 4.9E-07 47.5 4.2 51 203-253 1-70 (78)
30 PF13325 MCRS_N: N-terminal re 95.1 0.012 2.7E-07 58.9 2.4 111 206-322 1-132 (199)
31 COG5114 Histone acetyltransfer 94.9 0.016 3.4E-07 61.8 2.4 46 204-251 63-108 (432)
32 TIGR02894 DNA_bind_RsfA transc 92.6 0.072 1.6E-06 52.0 2.2 46 203-251 3-54 (161)
33 KOG4282 Transcription factor G 91.7 0.11 2.4E-06 54.9 2.6 55 204-258 54-119 (345)
34 PF09111 SLIDE: SLIDE; InterP 89.7 0.34 7.5E-06 45.0 3.5 52 201-252 46-110 (118)
35 PF12776 Myb_DNA-bind_3: Myb/S 89.5 0.39 8.5E-06 41.1 3.5 49 206-254 1-64 (96)
36 PRK13923 putative spore coat p 88.4 0.24 5.3E-06 48.8 1.7 48 203-250 4-54 (170)
37 TIGR01557 myb_SHAQKYF myb-like 86.8 0.35 7.5E-06 39.6 1.4 43 265-313 3-51 (57)
38 PF13325 MCRS_N: N-terminal re 84.4 0.67 1.4E-05 46.8 2.4 53 202-254 71-128 (199)
39 PF08914 Myb_DNA-bind_2: Rap1 83.9 0.18 3.8E-06 42.4 -1.6 54 265-319 2-60 (65)
40 PLN03162 golden-2 like transcr 83.5 3 6.5E-05 45.9 6.9 73 197-269 230-304 (526)
41 COG5118 BDP1 Transcription ini 83.4 1.2 2.7E-05 48.8 4.1 54 195-251 356-409 (507)
42 KOG0457 Histone acetyltransfer 82.8 0.61 1.3E-05 51.6 1.5 50 263-317 70-119 (438)
43 KOG2656 DNA methyltransferase 77.7 2.4 5.1E-05 46.8 3.8 49 204-253 130-182 (445)
44 TIGR02894 DNA_bind_RsfA transc 72.0 0.82 1.8E-05 44.8 -1.2 56 263-320 2-59 (161)
45 PLN03142 Probable chromatin-re 71.0 4.5 9.7E-05 49.7 4.3 49 203-251 925-983 (1033)
46 KOG1279 Chromatin remodeling f 69.0 4.5 9.9E-05 46.0 3.6 44 264-313 252-295 (506)
47 COG5259 RSC8 RSC chromatin rem 64.9 3.3 7.1E-05 46.7 1.4 43 264-312 278-320 (531)
48 PF11626 Rap1_C: TRF2-interact 55.6 9.9 0.00021 33.2 2.5 14 202-215 45-58 (87)
49 PF04504 DUF573: Protein of un 52.6 21 0.00045 32.1 4.1 79 203-282 3-94 (98)
50 PF13404 HTH_AsnC-type: AsnC-t 48.8 16 0.00036 28.0 2.5 39 210-251 3-41 (42)
51 PLN03142 Probable chromatin-re 47.8 26 0.00056 43.4 5.2 105 204-316 824-984 (1033)
52 PRK11179 DNA-binding transcrip 43.6 24 0.00052 33.3 3.3 42 209-253 8-49 (153)
53 PF13833 EF-hand_8: EF-hand do 42.8 40 0.00087 25.7 3.9 44 10-53 1-49 (54)
54 COG5114 Histone acetyltransfer 41.1 12 0.00025 40.8 0.8 47 263-314 61-107 (432)
55 KOG4167 Predicted DNA-binding 38.6 30 0.00066 41.3 3.7 44 204-250 619-662 (907)
56 KOG2009 Transcription initiati 37.9 36 0.00077 39.7 4.1 52 197-251 402-453 (584)
57 PRK11169 leucine-responsive tr 37.3 28 0.00061 33.3 2.7 50 209-261 13-68 (164)
58 KOG0384 Chromodomain-helicase 37.0 16 0.00035 45.6 1.2 31 203-233 1132-1162(1373)
59 cd05029 S-100A6 S-100A6: S-100 36.4 89 0.0019 27.2 5.5 43 11-53 26-75 (88)
60 smart00595 MADF subfamily of S 33.3 18 0.00039 30.6 0.7 24 226-252 29-52 (89)
61 PF07750 GcrA: GcrA cell cycle 31.6 1.4E+02 0.0031 29.2 6.6 36 267-309 2-37 (162)
62 PF12776 Myb_DNA-bind_3: Myb/S 29.6 14 0.0003 31.6 -0.7 49 267-315 1-61 (96)
63 cd00052 EH Eps15 homology doma 28.7 1.2E+02 0.0027 23.4 4.7 44 9-52 11-56 (67)
64 PF09420 Nop16: Ribosome bioge 28.6 95 0.0021 30.1 4.8 48 202-250 112-161 (164)
65 PF12917 HD_2: HD containing h 28.6 50 0.0011 34.1 3.0 41 24-82 33-73 (215)
66 KOG1194 Predicted DNA-binding 27.6 53 0.0012 37.4 3.2 58 200-260 183-240 (534)
67 KOG4468 Polycomb-group transcr 26.4 1.2E+02 0.0026 35.9 5.7 55 204-259 88-150 (782)
68 COG5118 BDP1 Transcription ini 25.1 37 0.00081 37.8 1.4 48 265-318 365-412 (507)
69 PRK13923 putative spore coat p 22.8 12 0.00026 37.3 -2.6 55 263-319 3-59 (170)
70 PF10545 MADF_DNA_bdg: Alcohol 22.2 35 0.00075 27.9 0.4 27 226-253 28-54 (85)
71 TIGR02644 Y_phosphoryl pyrimid 22.0 47 0.001 37.1 1.5 30 6-35 6-43 (405)
72 cd05023 S-100A11 S-100A11: S-1 21.9 1.4E+02 0.0031 26.1 4.2 43 10-52 24-75 (89)
73 cd08209 RLP_DK-MTP-1-P-enolase 20.1 63 0.0014 35.9 2.0 79 13-93 198-297 (391)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.96 E-value=1.8e-30 Score=258.27 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=100.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc-ccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAM 280 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p-gRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav 280 (603)
+.||+||+|||++|+++|++||.++|..|++. ++ +|++++||.||.| ||+|+ |+++.||+|||++|++++
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~--~gl~R~GKSCRlRW~N------yLrP~-ikrg~fT~eEe~~Ii~lH 77 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKL--AGLRRCGKSCRLRWTN------YLRPD-LKRGNFSDEEEDLIIKLH 77 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhh--cCCCccchHHHHHhhc------ccCCC-ccCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999997 66 9999999999999 99999 999999999999999999
Q ss_pred HhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCCcC
Q 007452 281 SLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 281 ~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas 321 (603)
.+ +|++ |+.||++|||||||. |||+|+++++|...
T Consensus 78 ~~---~GNr--Ws~IA~~LPGRTDNe-IKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 78 AL---LGNR--WSLIAGRLPGRTDNE-VKNHWNTHLKKKLL 112 (238)
T ss_pred HH---HCcH--HHHHHhhCCCcCHHH-HHHHHHHHHHHHHH
Confidence 99 9999 999999999999999 99999999988754
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.95 E-value=5.4e-29 Score=248.90 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=107.0
Q ss_pred ccCCCCCCCcccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccC
Q 007452 177 KVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHG 256 (603)
Q Consensus 177 kq~lp~~S~d~~D~nG~~s~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~ 256 (603)
+.+++.-...+|++.| .++++||+|||++|+++|++||..+|..||+. +.++|+++|||+||.+
T Consensus 7 ~~~~~~~~~pcc~K~g---------lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~-~g~gRT~KQCReRW~N------ 70 (249)
T PLN03212 7 KKPVSKKTTPCCTKMG---------MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR-AGLLRCGKSCRLRWMN------ 70 (249)
T ss_pred CCCCCCCCCCCcccCC---------CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh-hhcCCCcchHHHHHHH------
Confidence 3344444456666444 48999999999999999999999999999986 2369999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
||+|+ |++++||.|||++|++++.. ||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 71 ~L~P~-I~kgpWT~EED~lLlel~~~---~GnK--Ws~IAk~LpGRTDnq-IKNRWns~LrK~ 126 (249)
T PLN03212 71 YLRPS-VKRGGITSDEEDLILRLHRL---LGNR--WSLIAGRIPGRTDNE-IKNYWNTHLRKK 126 (249)
T ss_pred hhchh-cccCCCChHHHHHHHHHHHh---cccc--HHHHHhhcCCCCHHH-HHHHHHHHHhHH
Confidence 99999 99999999999999999999 9999 999999999999999 999999988876
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-27 Score=253.65 Aligned_cols=110 Identities=15% Similarity=0.257 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHH
Q 007452 196 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLA 275 (603)
Q Consensus 196 ~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~ 275 (603)
...+.+.+|++||+|||++|+++|++||.++|..||+. +.++|+++|||+||.+ ||+|+ |++++||.|||++
T Consensus 6 Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~-~g~gRT~KQCRERW~N------yLdP~-IkKgpWT~EED~l 77 (459)
T PLN03091 6 CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ-AGLQRCGKSCRLRWIN------YLRPD-LKRGTFSQQEENL 77 (459)
T ss_pred cCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh-hccCcCcchHhHHHHh------ccCCc-ccCCCCCHHHHHH
Confidence 34577889999999999999999999999999999986 2359999999999999 99999 9999999999999
Q ss_pred HHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 276 ARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 276 Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
|++++.. ||++ |++||.+|||||+++ |||||+.++++.
T Consensus 78 LLeL~k~---~GnK--WskIAk~LPGRTDnq-IKNRWnslLKKk 115 (459)
T PLN03091 78 IIELHAV---LGNR--WSQIAAQLPGRTDNE-IKNLWNSCLKKK 115 (459)
T ss_pred HHHHHHH---hCcc--hHHHHHhcCCCCHHH-HHHHHHHHHHHH
Confidence 9999999 9999 999999999999999 999999988875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.54 E-value=7.7e-15 Score=116.59 Aligned_cols=60 Identities=32% Similarity=0.468 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHH
Q 007452 207 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 276 (603)
Q Consensus 207 WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~L 276 (603)
||+|||++|+.+|.+|| .+|..||+. ++.|++.||+.||++ +|+|. +++++||.+||+.|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~--l~~Rt~~~~~~r~~~------~l~~~-~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEH--LGNRTPKQCRNRWRN------HLRPK-ISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHH--STTS-HHHHHHHHHH------TTSTT-STSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHH--HCcCCHHHHHHHHHH------HCccc-ccCCCcCHHHHhcC
Confidence 99999999999999999 799999987 767999999999999 89998 99999999999876
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.44 E-value=5.5e-14 Score=154.96 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=91.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHH
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 276 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~L 276 (603)
.+.+..++++||++||.+|+.+|.+||...|.+|-.. +|||+..|||+||.+ .|+.. .+++.|+-.||+.|
T Consensus 353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~--vPnRSdsQcR~RY~n------vL~~s-~K~~rW~l~edeqL 423 (939)
T KOG0049|consen 353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA--VPNRSDSQCRERYTN------VLNRS-AKVERWTLVEDEQL 423 (939)
T ss_pred ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHh--cCCccHHHHHHHHHH------HHHHh-hccCceeecchHHH
Confidence 3567789999999999999999999999999999987 999999999999999 89998 99999999999999
Q ss_pred HHHHHhhcCCCCCCchhhhhccCCCCCCCC
Q 007452 277 RHAMSLALDMPVKNITASCTNTTAGTTSSA 306 (603)
Q Consensus 277 leav~~al~~G~Kk~Ws~IA~~LPGRTdnq 306 (603)
+.+|.. ||.. +|.+||.+||.||..+
T Consensus 424 ~~~V~~---YG~g-~WakcA~~Lp~~t~~q 449 (939)
T KOG0049|consen 424 LYAVKV---YGKG-NWAKCAMLLPKKTSRQ 449 (939)
T ss_pred HHHHHH---Hccc-hHHHHHHHccccchhH
Confidence 999999 9987 7999999999999955
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.39 E-value=7.2e-14 Score=154.06 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---CcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 278 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~---nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lle 278 (603)
.+.+.||+|||.+|+.+|+....+ +|++|-.+ |+||+..|+-.||.. .|+|+ |++++||.+||.+|+.
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Y--mpgr~~~qLI~R~~~------~LdPs-ikhg~wt~~ED~~L~~ 373 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQY--MPGRTRQQLITRFSH------TLDPS-VKHGRWTDQEDVLLVC 373 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHh--cCCcchhhhhhhhee------ccCcc-ccCCCCCCHHHHHHHH
Confidence 456899999999999999988655 59999976 999999999999999 99999 9999999999999999
Q ss_pred HHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCC
Q 007452 279 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 318 (603)
Q Consensus 279 av~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrk 318 (603)
+|.+ ||.+ .|.+|-..+|||++.| |+.||...|..
T Consensus 374 AV~~---Yg~k-dw~k~R~~vPnRSdsQ-cR~RY~nvL~~ 408 (939)
T KOG0049|consen 374 AVSR---YGAK-DWAKVRQAVPNRSDSQ-CRERYTNVLNR 408 (939)
T ss_pred HHHH---hCcc-chhhHHHhcCCccHHH-HHHHHHHHHHH
Confidence 9999 9887 7999999999999999 99888776553
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.33 E-value=3.4e-13 Score=147.73 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=99.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHH
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 277 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Ll 277 (603)
++.+++.+.|+..||+.|+.+|+.||..+|..||.. +..|+++||+.||.+ +++|. +++..|+.+||+.|+
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~--~~~~~~kq~~~rw~~------~lnp~-lk~~~~~~eed~~li 84 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL--LISSTGKQSSNRWNN------HLNPQ-LKKKNWSEEEDEQLI 84 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHH--hcccccccccchhhh------hhchh-cccccccHHHHHHHH
Confidence 466778999999999999999999999999999987 566999999999999 99999 999999999999999
Q ss_pred HHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 278 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 278 eav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
++..+ +|.+ |+.|+..++|||..+ |.++|+.++...
T Consensus 85 ~l~~~---~~~~--wstia~~~d~rt~~~-~~ery~~~~~~~ 120 (512)
T COG5147 85 DLDKE---LGTQ--WSTIADYKDRRTAQQ-CVERYVNTLEDL 120 (512)
T ss_pred HHHHh---cCch--hhhhccccCccchHH-HHHHHHHHhhhh
Confidence 99999 9999 999999999999999 999999766654
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.27 E-value=2e-12 Score=99.43 Aligned_cols=45 Identities=44% Similarity=0.721 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccc-ccchhhhhHHHHh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI 250 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p-gRT~kQCR~RW~n 250 (603)
|++||+|||++|+++|.+||.++|..||.. ++ +||+.||+.||++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR--MPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH--HSSSSTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH--cCCCCCHHHHHHHHHh
Confidence 689999999999999999997789999987 78 9999999999998
No 9
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.7e-12 Score=139.21 Aligned_cols=100 Identities=23% Similarity=0.229 Sum_probs=91.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 281 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~ 281 (603)
++.+-|+.-||++|..+|.+||.+.|.+|+.. +...+++||+.||.. +|||. |++..|+.|||+.|+++..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sl--l~~kt~rqC~~rw~e------~ldp~-i~~tews~eederlLhlak 75 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASL--LNRKTARQCKARWEE------WLDPA-IKKTEWSREEDERLLHLAK 75 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHH--HhhcchhHHHHHHHH------HhCHH-HhhhhhhhhHHHHHHHHHH
Confidence 46789999999999999999999999999987 789999999999999 99999 9999999999999999999
Q ss_pred hhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 282 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 282 ~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
+ ++.. |..|+..+ |||.++ |-.||+.++-
T Consensus 76 l---~p~q--wrtIa~i~-gr~~~q-c~eRy~~ll~ 104 (617)
T KOG0050|consen 76 L---EPTQ--WRTIADIM-GRTSQQ-CLERYNNLLD 104 (617)
T ss_pred h---cCCc--cchHHHHh-hhhHHH-HHHHHHHHHH
Confidence 9 9999 99999855 999999 7777665443
No 10
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.00 E-value=3.5e-10 Score=83.46 Aligned_cols=46 Identities=46% Similarity=0.723 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
++.||++||.+|+.++.+||..+|..|+.. +++||+.+|+.||.++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~--~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE--LPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999987 8899999999999984
No 11
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.89 E-value=9.8e-10 Score=122.29 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCC-CCCCCCCHHHHHHHHHHHH
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGS-NSSGSQLSEAQLAARHAMS 281 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~-IkkgpWT~EEDe~Lleav~ 281 (603)
++|.||+||++.|..+|.++| +.|..|++. -||.+..||+||++ +..++. .+++.||.||.+.|+++|+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~---lgr~P~~crd~wr~------~~~~g~~~~r~~Ws~eEe~~Llk~V~ 452 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKA---LGRMPMDCRDRWRQ------YVKCGSKRNRGAWSIEEEEKLLKTVN 452 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHH---HccCcHHHHHHHHH------hhccccccccCcchHHHHHHHHHHHH
Confidence 699999999999999999999 999999986 49999999999999 555552 6889999999999999996
Q ss_pred hhcC----C------------C-----CCCchhhhhccCCCCCCCCCccccCCCCCCCCc
Q 007452 282 LALD----M------------P-----VKNITASCTNTTAGTTSSATMNNPVPSTANAEA 320 (603)
Q Consensus 282 ~al~----~------------G-----~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkea 320 (603)
..+. + + ...+|..|+..+..|+-.+ |+-.|+.++....
T Consensus 453 ~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q-Cr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 453 EMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ-CRYKWYKLTTSPS 511 (607)
T ss_pred HHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch-HHHHHHHHHhhHH
Confidence 2211 1 1 1225999999888899888 9999998887763
No 12
>PLN03091 hypothetical protein; Provisional
Probab=98.88 E-value=1.5e-09 Score=117.13 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh---ccCcccCCCCCCCCCCHHHH
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK---KHGNVILGSNSSGSQLSEAQ 273 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR---r~~~LnP~~IkkgpWT~EED 273 (603)
++.+..++++||+|||++|++++++|| .+|..||++ ++|||+.||++||+.+.| +...++|. .+.++.+.|+
T Consensus 60 yLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~--LPGRTDnqIKNRWnslLKKklr~~~I~p~--t~kpl~e~E~ 134 (459)
T PLN03091 60 YLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKKLRQRGIDPN--THKPLSEVEN 134 (459)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHcCCCCC--CCCCcccccc
Confidence 456778999999999999999999999 799999987 899999999999996533 23456664 4556665543
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.86 E-value=2.2e-09 Score=78.25 Aligned_cols=43 Identities=44% Similarity=0.767 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHh
Q 007452 206 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 250 (603)
Q Consensus 206 ~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~n 250 (603)
+||+|||+.|+.++.+||.++|..|++. +++|++.||++||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~--~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE--LPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH--cCCCCHHHHHHHHHH
Confidence 5999999999999999999999999987 889999999999987
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.80 E-value=3e-09 Score=107.79 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
++.+..++++||+|||++|++++..|| .+|..||+. ++|||..||++||..+
T Consensus 71 ~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~--LpGRTDnqIKNRWns~ 122 (249)
T PLN03212 71 YLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGR--IPGRTDNEIKNYWNTH 122 (249)
T ss_pred hhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhh--cCCCCHHHHHHHHHHH
Confidence 467888999999999999999999999 889999987 8999999999999973
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.50 E-value=9e-08 Score=96.14 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHh-hhhc
Q 007452 194 IGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI-LRKK 254 (603)
Q Consensus 194 ~s~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~n-lrRr 254 (603)
+..++++..+|+.||+|||++|++++..+| ++|..||++ +||||+..++.+|+- |+||
T Consensus 52 W~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~--LPGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 52 WTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGR--LPGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred hhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhh--CCCcCHHHHHHHHHHHHHHH
Confidence 444688999999999999999999999999 889999998 999999999999984 3443
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.49 E-value=1.1e-08 Score=78.63 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCC-CCCCCCCccccCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-GTTSSATMNNPVPST 315 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LP-GRTdnqtIKNRwns~ 315 (603)
+++||.|||++|++++.+ ||.. +|..|+..+| |||..+ |++||+.+
T Consensus 1 r~~Wt~eE~~~l~~~v~~---~g~~-~W~~Ia~~~~~~Rt~~q-c~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKK---YGKD-NWKKIAKRMPGGRTAKQ-CRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHH---STTT-HHHHHHHHHSSSSTHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCCc-HHHHHHHHcCCCCCHHH-HHHHHHhh
Confidence 479999999999999999 9877 7999999999 999999 99999754
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.39 E-value=8.3e-08 Score=70.72 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
+++||.+||.+|+.++.. +| .. |..|+..|++||..+ |++||+..++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~---~g~~~--w~~Ia~~~~~rt~~~-~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKK---YGKNN--WEKIAKELPGRTAEQ-CRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCHHH-HHHHHHHHcC
Confidence 368999999999999999 99 78 999999999999999 9999987654
No 18
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.25 E-value=1.7e-07 Score=74.54 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 268 QLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 268 WT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
||.|||++|++++.. +|++ |..||.+|+.||..+ |++||+..|++.
T Consensus 1 WT~eEd~~L~~~~~~---~g~~--W~~Ia~~l~~Rt~~~-~~~r~~~~l~~~ 46 (60)
T PF13921_consen 1 WTKEEDELLLELVKK---YGND--WKKIAEHLGNRTPKQ-CRNRWRNHLRPK 46 (60)
T ss_dssp S-HHHHHHHHHHHHH---HTS---HHHHHHHSTTS-HHH-HHHHHHHTTSTT
T ss_pred CCHHHHHHHHHHHHH---HCcC--HHHHHHHHCcCCHHH-HHHHHHHHCccc
Confidence 999999999999999 9988 999999996699999 999999977654
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.15 E-value=5.3e-07 Score=65.61 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCCCCCCCCCccccCCCC
Q 007452 267 SQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPST 315 (603)
Q Consensus 267 pWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LPGRTdnqtIKNRwns~ 315 (603)
+||.+||..|++++.. +| .. |..|+..+++||..+ |+++|+..
T Consensus 1 ~Wt~eE~~~l~~~~~~---~g~~~--w~~Ia~~~~~rs~~~-~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKK---YGKNN--WEKIAKELPGRTPKQ-CRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHH---HCcCC--HHHHHhHcCCCCHHH-HHHHHHHh
Confidence 5999999999999999 99 77 999999999999999 99998754
No 20
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.05 E-value=6.3e-06 Score=67.02 Aligned_cols=50 Identities=32% Similarity=0.432 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCc---cccccccccccc-chhhhhHHHHhhh
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDR-TASQLSQRWNILR 252 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW---~kIAk~~f~pgR-T~kQCR~RW~nlr 252 (603)
|++..||+||...++.+++.+|.|+| +.|+..+ ...| |..||+.|.+.++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999998899 9999862 3355 9999999999854
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=97.83 E-value=6.5e-06 Score=91.38 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=81.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCC-CCCCCCCCHHHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG-SNSSGSQLSEAQLAARHAM 280 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~-~IkkgpWT~EEDe~Lleav 280 (603)
..++.||.||+..|...+.++| +.|..|.+. .+|-+..||+||++ |..++ ++++++|+.||+.+|..-+
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~---~~rmp~~crd~wr~------~~~~g~t~~~~~ws~eee~~l~~vv 358 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHG-GSWTEIGKL---LGRMPNDCRDRWRD------YVKCGDTLKRNRWSIEEEELLDKVV 358 (512)
T ss_pred hhhccCcccccccccccccccc-chhhHhhhh---hccCcHHHHHHHhh------hccccCccCCCCCchhhhhhHHHHH
Confidence 4789999999999999999999 999999975 48999999999999 55553 4888999999999887777
Q ss_pred Hhhc-C-CCC-CCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 281 SLAL-D-MPV-KNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 281 ~~al-~-~G~-Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
.... . ... ...|..|+.+++.|.-.. +.-++..+..
T Consensus 359 ~e~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~~~~~ 397 (512)
T COG5147 359 NEMRLEAQQSSRILWLLIAQNIRNRLQHH-CRDKYGVLIS 397 (512)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhhccccCC-CCCccccccc
Confidence 7311 0 111 124999999999887666 5444443333
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.34 E-value=0.00014 Score=79.02 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
-...||.+|+-+|+++++.||.|||..||.+ +..|+..+|+++|.++
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~h--IGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADH--IGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHH--HcccchHHHHHHHHHH
Confidence 4678999999999999999999999999998 8899999999999973
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.07 E-value=0.00028 Score=59.60 Aligned_cols=58 Identities=29% Similarity=0.534 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHH------hCC-C------Cccccccc--ccccccchhhhhHHHHhhhhccCcccCC
Q 007452 204 RKPWTAEEDLELISAVQK------CGE-G------NWANILRG--DFKWDRTASQLSQRWNILRKKHGNVILG 261 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k------~G~-~------nW~kIAk~--~f~pgRT~kQCR~RW~nlrRr~~~LnP~ 261 (603)
|..||.+|...|+.++.. ++. + -|..||.. .+...|++.||+.||.+|+++...+.-.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999987 211 1 29999987 1234899999999999998866555444
No 24
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.76 E-value=0.0011 Score=75.00 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=73.3
Q ss_pred CCCCCCCHHHHHHHHHHHH-------Hh------------------CCCCcccccccccccccchhhhhHHHHhhhhccC
Q 007452 202 KKRKPWTAEEDLELISAVQ-------KC------------------GEGNWANILRGDFKWDRTASQLSQRWNILRKKHG 256 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~-------k~------------------G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~ 256 (603)
++++.||.||.+.|+.+|+ ++ -..+|..|++. +..|+..|||..|..|.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~--~~TR~~~qCr~Kw~kl~---- 507 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM--LGTRSRIQCRYKWYKLT---- 507 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh--hcCCCcchHHHHHHHHH----
Confidence 6899999999999999995 33 22469999986 89999999999999752
Q ss_pred cccCCCCCCCCCCH-HHHHHHHHHHHh-hcCCCCCCchhhhhccCCCCC-CCCCccccCCCCCCC
Q 007452 257 NVILGSNSSGSQLS-EAQLAARHAMSL-ALDMPVKNITASCTNTTAGTT-SSATMNNPVPSTANA 318 (603)
Q Consensus 257 ~LnP~~IkkgpWT~-EEDe~Lleav~~-al~~G~Kk~Ws~IA~~LPGRT-dnqtIKNRwns~lrk 318 (603)
..|. .+...|.. .+.--|++-+.. -+.-.+...|..|+...||+. ..+ ++-+|..+...
T Consensus 508 -~~~s-~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~~~~e-~r~q~~~lk~~ 569 (607)
T KOG0051|consen 508 -TSPS-FNKRQESKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGESTGEE-LRLQFERLKKK 569 (607)
T ss_pred -hhHH-hhcccccccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCCcHHH-HHHHHHhHhhc
Confidence 2343 44455553 122223333333 111133335999999999998 555 67666554444
No 25
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.18 E-value=0.0031 Score=69.50 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
....||.+|-.+|+++|+.|| .+|.+||++ +..|+..||-.||.+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~H--VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARH--VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHH--hCCCCHHHHHHHHHcC
Confidence 567999999999999999999 899999999 8999999999999873
No 26
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.08 E-value=0.0045 Score=69.29 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 201 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 201 RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
-.-+..||.+|+-+|+++|++|| -+|.+|+.+ +..|+..||-.+|.+|
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~h--Vg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADH--VGTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhc--cCCCCHHHHHHHHHhc
Confidence 35688999999999999999999 999999999 8999999999999984
No 27
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.62 E-value=0.0095 Score=49.86 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCC--ccccccccccc-ccchhhhhHHHHh
Q 007452 204 RKPWTAEEDLELISAVQKC---G---EGN--WANILRGDFKW-DRTASQLSQRWNI 250 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~---G---~~n--W~kIAk~~f~p-gRT~kQCR~RW~n 250 (603)
|.++|.|||+.|+..|..+ | .|| |..+++. .+ .+|-..-|+||.+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~--~~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK--HPTRHTWQSWRDRYLK 55 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS---SSS--SHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 6789999999999999655 2 234 9999987 45 9999999999987
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=0.014 Score=65.23 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
++.+..++.-|+.|||++|+.+...+. ..|..|+.. -+|++.||-+||.++
T Consensus 52 ~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i---~gr~~~qc~eRy~~l 102 (617)
T KOG0050|consen 52 WLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADI---MGRTSQQCLERYNNL 102 (617)
T ss_pred HhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHH---hhhhHHHHHHHHHHH
Confidence 356778999999999999999998887 899999964 499999999999987
No 29
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.32 E-value=0.023 Score=47.48 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHh-----CC-----------CCccccccc---ccccccchhhhhHHHHhhhh
Q 007452 203 KRKPWTAEEDLELISAVQKC-----GE-----------GNWANILRG---DFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~-----G~-----------~nW~kIAk~---~f~pgRT~kQCR~RW~nlrR 253 (603)
+...||.+|.+.|+.+|.+| |. .-|..|+.. .+.+.|+..||+.+|.+|+.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999987 31 129999987 22348999999999999754
No 30
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=95.15 E-value=0.012 Score=58.91 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccc-ccccccchhhhhHHHHhh----------hhccCcccCCCC----CCCCCCH
Q 007452 206 PWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNIL----------RKKHGNVILGSN----SSGSQLS 270 (603)
Q Consensus 206 ~WT~EEDe~Ll~lV~k~G~~nW~kIAk~-~f~pgRT~kQCR~RW~nl----------rRr~~~LnP~~I----kkgpWT~ 270 (603)
+|+++.|-.|+.+|..-. +-..|++. .|--..|-.-+.+||..| +.+...|.|..+ .+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999997654 66666665 444467888999999965 556667888632 4569999
Q ss_pred HHHHHHHHHHHhhcCCCCC-Cchhhh-----hccCCCCCCCCCccccCCCCCCCCcCC
Q 007452 271 EAQLAARHAMSLALDMPVK-NITASC-----TNTTAGTTSSATMNNPVPSTANAEASS 322 (603)
Q Consensus 271 EEDe~Lleav~~al~~G~K-k~Ws~I-----A~~LPGRTdnqtIKNRwns~lrkeas~ 322 (603)
+|+++|...... .... ..+.+| +-+.++||... ..++|..+.+....+
T Consensus 79 ~EE~lL~~v~s~---~~p~le~Fq~LL~~n~~vFh~sRTak~-L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 79 EEEQLLGTVASS---SQPSLETFQELLDKNRSVFHPSRTAKS-LQDHWRLMKQYHLLP 132 (199)
T ss_pred HHHHHHHhhhhc---cCCcHHHHHHHHHhChhhhccccCHHH-HHHHHHHHHHhchhh
Confidence 999998775433 2111 124444 23558999999 999998665555443
No 31
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.90 E-value=0.016 Score=61.79 Aligned_cols=46 Identities=26% Similarity=0.519 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
--.|+..|+-+|+++.+.+|.|||..||.+ ++.|+...|+++|.++
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIady--iGsr~kee~k~HylK~ 108 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADY--IGSRAKEEIKSHYLKM 108 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHH--HhhhhhHHHHHHHHHH
Confidence 457999999999999999999999999987 8899999999999974
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.57 E-value=0.072 Score=51.95 Aligned_cols=46 Identities=37% Similarity=0.627 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCC-----cccccccccccccchhhhhHHHHhh
Q 007452 203 KRKPWTAEEDLELISAVQKCG-EGN-----WANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G-~~n-----W~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
+...||.|||.+|-..|-+|= +|. ...+++. -+||+.-|.-||+-+
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~---L~RTsAACGFRWNs~ 54 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA---LNRTAAACGFRWNAY 54 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---HcccHHHhcchHHHH
Confidence 567899999999999999882 122 6667765 499999999999965
No 33
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.73 E-value=0.11 Score=54.89 Aligned_cols=55 Identities=25% Similarity=0.487 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCCC-----ccccccc--ccccccchhhhhHHHHhhhhccCcc
Q 007452 204 RKPWTAEEDLELISAVQKC----GEGN-----WANILRG--DFKWDRTASQLSQRWNILRKKHGNV 258 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~----G~~n-----W~kIAk~--~f~pgRT~kQCR~RW~nlrRr~~~L 258 (603)
...|+.+|-..|+++.... ..++ |..||+. ....-|++.||+.||.+|++++...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988743 3333 9999984 2356899999999999987654443
No 34
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=89.73 E-value=0.34 Score=44.98 Aligned_cols=52 Identities=37% Similarity=0.512 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------ccccccchhhhhHHHHhhh
Q 007452 201 RKKRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNILR 252 (603)
Q Consensus 201 RkKkg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~----------~f~pgRT~kQCR~RW~nlr 252 (603)
..+++.||+|||.-|+-.+.+||- +.|..|-.. .|+..||+..+..|-..|.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 446889999999999999999999 899888543 2356899999998887643
No 35
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.53 E-value=0.39 Score=41.09 Aligned_cols=49 Identities=31% Similarity=0.588 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHh---CC----CC-----ccccccc---ccccccchhhhhHHHHhhhhc
Q 007452 206 PWTAEEDLELISAVQKC---GE----GN-----WANILRG---DFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 206 ~WT~EEDe~Ll~lV~k~---G~----~n-----W~kIAk~---~f~pgRT~kQCR~RW~nlrRr 254 (603)
.||+++|+.|++++... |. +. |..|+.. .+....+..||++||..|++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999998644 21 22 8888776 223466889999999987664
No 36
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=88.42 E-value=0.24 Score=48.78 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cccccchhhhhHHHHh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGD---FKWDRTASQLSQRWNI 250 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~---f~pgRT~kQCR~RW~n 250 (603)
+...||.|||.+|-..|-+|+...=..++... -.-+||..+|..||+-
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs 54 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNS 54 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 67899999999999999888744333333110 0248999999999975
No 37
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=86.75 E-value=0.35 Score=39.60 Aligned_cols=43 Identities=7% Similarity=-0.073 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCch---hhhhccCC--CCCCCCCccccCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPV-KNIT---ASCTNTTA--GTTSSATMNNPVP 313 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~-Kk~W---s~IA~~LP--GRTdnqtIKNRwn 313 (603)
+-.||+||....++++.. +|. . | ..|+..+. +.|..+ |+.|+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~---~G~g~--~a~pk~I~~~~~~~~lT~~q-V~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK---LGGPD--WATPKRILELMVVDGLTRDQ-VASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCc--ccchHHHHHHcCCCCCCHHH-HHHHHH
Confidence 357999999999999999 998 6 9 99999874 337766 766643
No 38
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=84.38 E-value=0.67 Score=46.79 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCCccccccc---ccccccchhhhhHHHHhhhhc
Q 007452 202 KKRKPWTAEEDLELISAVQKCG--EGNWANILRG---DFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G--~~nW~kIAk~---~f~pgRT~kQCR~RW~nlrRr 254 (603)
..+-+||.+|+++|........ ...+.+|-.. .|-++||++++..+|+.|++.
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy 128 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQY 128 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHh
Confidence 3689999999999999876653 2357777655 467899999999999987654
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=83.88 E-value=0.18 Score=42.35 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcC----CCCCCchhhhhccCC-CCCCCCCccccCCCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALD----MPVKNITASCTNTTA-GTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~----~G~Kk~Ws~IA~~LP-GRTdnqtIKNRwns~lrke 319 (603)
+.+||.+||.+|++.|...-. .+.++.|..++...| .+|=-. +++||...|++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQS-wR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQS-WRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHH-HHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcc
Confidence 458999999999999965221 222337999999988 666555 999997776655
No 40
>PLN03162 golden-2 like transcription factor; Provisional
Probab=83.54 E-value=3 Score=45.85 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--cccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCC
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQL 269 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~n--W~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT 269 (603)
...+||.|-.||+|=.++++.+|.+.|..+ =+.|.+.+-+++=|..+++.+.++||-....|-+..-....|+
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt 304 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWT 304 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccch
Confidence 345778899999999999999999999432 4556655446788999999999987665445544422334454
No 41
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.43 E-value=1.2 Score=48.77 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 195 GGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 195 s~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
++...+++..-+||.+|-++++++...+| -++..|+.. +|.|..+|++-.|.+=
T Consensus 356 s~t~g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~l--fP~R~RkqIKaKfi~E 409 (507)
T COG5118 356 SSTFGKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSL--FPNRERKQIKAKFIKE 409 (507)
T ss_pred cccccCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHh--cCchhHHHHHHHHHHH
Confidence 33456788899999999999999999999 899999976 8999999999999863
No 42
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=82.76 E-value=0.61 Score=51.65 Aligned_cols=50 Identities=6% Similarity=-0.112 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
|-...||.+|+-+|++++.. +|-. +|..||.++..||..+ ||.||..+.-
T Consensus 70 i~~~~WtadEEilLLea~~t---~G~G-NW~dIA~hIGtKtkee-ck~hy~k~fv 119 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAET---YGFG-NWQDIADHIGTKTKEE-CKEHYLKHFV 119 (438)
T ss_pred CCCCCCChHHHHHHHHHHHH---hCCC-cHHHHHHHHcccchHH-HHHHHHHHHh
Confidence 55678999999999999999 8887 7999999999888888 9988876443
No 43
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=77.71 E-value=2.4 Score=46.83 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccchhhhhHHHHhhhh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGD----FKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~----f~pgRT~kQCR~RW~nlrR 253 (603)
-..||.||.+-|.+++++|. -+|--|+..+ |...||-..+++||..+||
T Consensus 130 dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred cccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 36799999999999999999 8899999763 5667999999999997766
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.03 E-value=0.82 Score=44.82 Aligned_cols=56 Identities=7% Similarity=-0.040 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC--chhhhhccCCCCCCCCCccccCCCCCCCCc
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAEA 320 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk--~Ws~IA~~LPGRTdnqtIKNRwns~lrkea 320 (603)
.+.+.||.|||.+|-+.|-..+--|.-. ..-.++..| +||+.+ |-=|||+.+|++-
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAA-CGFRWNs~VRkqY 59 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAA-CGFRWNAYVRKQY 59 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHH-hcchHHHHHHHHH
Confidence 3567899999999988887744334432 244555555 899999 9999999999873
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=71.04 E-value=4.5 Score=49.66 Aligned_cols=49 Identities=33% Similarity=0.479 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccc----------ccccccchhhhhHHHHhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRG----------DFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~----------~f~pgRT~kQCR~RW~nl 251 (603)
+++.||+|||+.|+-.+.+||.++|..|-.. .|+..||+..+..|-..|
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 5668999999999999999999999998322 336789999999888874
No 46
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=68.99 E-value=4.5 Score=46.03 Aligned_cols=44 Identities=5% Similarity=-0.057 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP 313 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwn 313 (603)
-...||.+|..+|++++.+ ||.. |.+|+.+...||-.+ |--+|.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~---y~dd--W~kVa~hVg~ks~eq-CI~kFL 295 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEM---YGDD--WNKVADHVGTKSQEQ-CILKFL 295 (506)
T ss_pred CCCCccHHHHHHHHHHHHH---hccc--HHHHHhccCCCCHHH-HHHHHH
Confidence 4568999999999999999 9999 999999999999877 544443
No 47
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=64.91 E-value=3.3 Score=46.65 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPV 312 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRw 312 (603)
....||.+|..+|++.+.+ ||.. |.+||.++..+|-.+ |==||
T Consensus 278 ~dk~WS~qE~~LLLEGIe~---ygDd--W~kVA~HVgtKt~Eq-CIl~F 320 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM---YGDD--WDKVARHVGTKTKEQ-CILHF 320 (531)
T ss_pred ccccccHHHHHHHHHHHHH---hhhh--HHHHHHHhCCCCHHH-HHHHH
Confidence 4569999999999999999 9999 999999999998877 44444
No 48
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=55.57 E-value=9.9 Score=33.16 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=8.9
Q ss_pred CCCCCCCHHHHHHH
Q 007452 202 KKRKPWTAEEDLEL 215 (603)
Q Consensus 202 kKkg~WT~EEDe~L 215 (603)
-..|-||+|+|+.|
T Consensus 45 n~~GiWT~eDD~~L 58 (87)
T PF11626_consen 45 NMPGIWTPEDDEML 58 (87)
T ss_dssp T-TT---HHHHHHH
T ss_pred CCCCCcCHHHHHHH
Confidence 35889999999999
No 49
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=52.58 E-value=21 Score=32.12 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh----CCC---Cccccccc---ccccccchhhhhHHHHhhhhccCcccCCCCCCC---CCC
Q 007452 203 KRKPWTAEEDLELISAVQKC----GEG---NWANILRG---DFKWDRTASQLSQRWNILRKKHGNVILGSNSSG---SQL 269 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~----G~~---nW~kIAk~---~f~pgRT~kQCR~RW~nlrRr~~~LnP~~Ikkg---pWT 269 (603)
-.+.||+|++-.|++++-.| |.. +|..+-.. .+-..=+..|+.+.-+.|++|....-.. ++.| .++
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~ 81 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFS 81 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCC
Confidence 35679999999999888766 643 34333221 0012346688888888887776555444 4444 678
Q ss_pred HHHHHHHHHHHHh
Q 007452 270 SEAQLAARHAMSL 282 (603)
Q Consensus 270 ~EEDe~Lleav~~ 282 (603)
..-|+.+.++-.+
T Consensus 82 ~~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 82 KPHDRRLFELSKK 94 (98)
T ss_pred CHhHHHHHHHHHH
Confidence 8888888777666
No 50
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=48.82 E-value=16 Score=27.99 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 210 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 210 EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
+=|..|+...+..|...|..||+. -|=+...|..|++.|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~---lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEE---LGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHH---HTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHH---HCcCHHHHHHHHHHh
Confidence 458899999999998999999986 388999999999874
No 51
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=47.75 E-value=26 Score=43.35 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=71.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhH-------HHHhh-------------------------
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ-------RWNIL------------------------- 251 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~-------RW~nl------------------------- 251 (603)
-..|+.-+=..++.++.+||..+...||.. +.+.|...++. ||..|
T Consensus 824 f~~w~~~~f~~f~~~~~~~gr~~~~~i~~~--~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~ 901 (1033)
T PLN03142 824 FSTWSRRDFNAFIRACEKYGRNDIKSIASE--MEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMK 901 (1033)
T ss_pred cCcccHHHHHHHHHHHHHhCHhHHHHHHHH--hcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999998899999986 77788777762 22111
Q ss_pred ---hhccCccc---------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccC------------CCCCCCCC
Q 007452 252 ---RKKHGNVI---------LGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT------------AGTTSSAT 307 (603)
Q Consensus 252 ---rRr~~~Ln---------P~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~L------------PGRTdnqt 307 (603)
+|-..|-+ +. -++..||.|||..|+-.+.+ +|.. .|-.|...+ ..||...
T Consensus 902 ~~~~k~~~~~~p~~~l~~~~~~-~~~~~~~~~~d~~~~~~~~~---~g~~-~~~~~~~~i~~~~~f~fd~~~~srt~~~- 975 (1033)
T PLN03142 902 AIGKKLDRYKNPWLELKIQYGQ-NKGKLYNEECDRFMLCMVHK---LGYG-NWDELKAAFRTSPLFRFDWFVKSRTPQE- 975 (1033)
T ss_pred HHHHHHHHccCcHHHceeecCC-CCCCcCCHHHHHHHHHHHHH---hccc-hHHHHHHHHHhCCceeeehhhccCCHHH-
Confidence 00001111 22 35567999999999999998 8865 498884432 4677666
Q ss_pred ccccCCCCC
Q 007452 308 MNNPVPSTA 316 (603)
Q Consensus 308 IKNRwns~l 316 (603)
++.|.+.++
T Consensus 976 ~~~r~~~l~ 984 (1033)
T PLN03142 976 LARRCDTLI 984 (1033)
T ss_pred HHHHHHHHH
Confidence 666655544
No 52
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=43.57 E-value=24 Score=33.33 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 209 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 209 ~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
.+-|.+|+.+.++.|.-.|..||+. -|-+...|+.|++.|..
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~---lglS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQ---FGVSPGTIHVRVEKMKQ 49 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH---HCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999997 48999999999998733
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=42.79 E-value=40 Score=25.74 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=33.0
Q ss_pred ccccccchhHHHHHhh-----hhHHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 10 KKGSISEGDVSSLLQR-----YTANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 10 ~k~~~se~d~~~~~~r-----y~~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
+++.|+-+|+..+|+. ++...+-.++.++-.--.-.|+|.+++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFIS 49 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHH
Confidence 3577888888888853 6677777777777777788888888764
No 54
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=41.07 E-value=12 Score=40.81 Aligned_cols=47 Identities=2% Similarity=-0.036 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPS 314 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns 314 (603)
|--..|+.+|+.+|++.... +|-. +|..||.++..|+... ||.||..
T Consensus 61 I~~e~WgadEEllli~~~~T---lGlG-NW~dIadyiGsr~kee-~k~HylK 107 (432)
T COG5114 61 IGEEGWGADEELLLIECLDT---LGLG-NWEDIADYIGSRAKEE-IKSHYLK 107 (432)
T ss_pred ccCCCcCchHHHHHHHHHHh---cCCC-cHHHHHHHHhhhhhHH-HHHHHHH
Confidence 44457999999999999988 7765 6999999999999988 9887764
No 55
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=38.56 E-value=30 Score=41.28 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 250 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~n 250 (603)
-..||+.|-.++.+++-.|. .++..|+++ +++.|-+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km--~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKM--VKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHH--hccccHHHHHHHHHH
Confidence 35899999999999999998 899999987 899999999986653
No 56
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=37.93 E-value=36 Score=39.69 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
...++....+|+.+|-++...+...+| .+...|+.. ++.|..+|+|..|.+-
T Consensus 402 t~sk~~~~~~w~~se~e~fyka~~~~g-s~~slis~l--~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 402 TYSKKLETDKWDASETELFYKALSERG-SDFSLISNL--FPLRDRKQIKAKFKKE 453 (584)
T ss_pred hccCccccCcccchhhHHhhhHHhhhc-ccccccccc--cccccHHHHHHHHhhh
Confidence 346778899999999999999999999 899999976 8999999999999854
No 57
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=37.34 E-value=28 Score=33.28 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh------ccCcccCC
Q 007452 209 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK------KHGNVILG 261 (603)
Q Consensus 209 ~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR------r~~~LnP~ 261 (603)
.+-|.+|+.+.++.|.-.|..||+. -|-+...|+.|++.|.. ....+||.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~---lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p~ 68 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKR---VGLSPTPCLERVRRLERQGFIQGYTALLNPH 68 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 5679999999999999999999987 38999999999998743 33445664
No 58
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=37.00 E-value=16 Score=45.63 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRG 233 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~ 233 (603)
.-.-|..+||..|+-+|-+||.|+|..|--.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~D 1162 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLD 1162 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccC
Confidence 4567999999999999999999999998654
No 59
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=36.44 E-value=89 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=36.5
Q ss_pred cccccchhHHHHHhhh-------hHHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 11 KGSISEGDVSSLLQRY-------TANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 11 k~~~se~d~~~~~~ry-------~~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
++.|+.+++..+|.++ +...|-.+++++-.-.+.+||+.+++.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~ 75 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVT 75 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 8899999999999764 567788889988777788999998874
No 60
>smart00595 MADF subfamily of SANT domain.
Probab=33.30 E-value=18 Score=30.57 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=20.0
Q ss_pred CcccccccccccccchhhhhHHHHhhh
Q 007452 226 NWANILRGDFKWDRTASQLSQRWNILR 252 (603)
Q Consensus 226 nW~kIAk~~f~pgRT~kQCR~RW~nlr 252 (603)
-|..|+.. + +-+..+|+.||.+|+
T Consensus 29 aW~~Ia~~--l-~~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEE--L-GLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHH--H-CcCHHHHHHHHHHHH
Confidence 39999987 4 449999999999873
No 61
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=31.62 E-value=1.4e+02 Score=29.18 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCcc
Q 007452 267 SQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMN 309 (603)
Q Consensus 267 pWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIK 309 (603)
.||+|..+.|.++... |-. -++|+..|.|.|-|+ |-
T Consensus 2 ~Wtde~~~~L~~lw~~----G~S--asqIA~~lg~vsRnA-Vi 37 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE----GLS--ASQIARQLGGVSRNA-VI 37 (162)
T ss_pred CCCHHHHHHHHHHHHc----CCC--HHHHHHHhCCcchhh-hh
Confidence 5999999999999988 444 799999999899888 53
No 62
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=29.56 E-value=14 Score=31.57 Aligned_cols=49 Identities=8% Similarity=-0.090 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCC--------chhhhhccCCCCCCCC----CccccCCCC
Q 007452 267 SQLSEAQLAARHAMSLALDMPVKN--------ITASCTNTTAGTTSSA----TMNNPVPST 315 (603)
Q Consensus 267 pWT~EEDe~Lleav~~al~~G~Kk--------~Ws~IA~~LPGRTdnq----tIKNRwns~ 315 (603)
.||++.++.|++++-..+.-|++. .|..|+..|-.++... .|+|||..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 499999999988887654334441 4889999885444433 378886543
No 63
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=28.67 E-value=1.2e+02 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred cccccccchhHHHHHhhh--hHHHHHHHHHHHhcCCCCCccHHHHH
Q 007452 9 QKKGSISEGDVSSLLQRY--TANTVLALLQEVAQFPDVKLDWNALV 52 (603)
Q Consensus 9 ~~k~~~se~d~~~~~~ry--~~~t~l~~lqe~~~~~~~~~dw~~lv 52 (603)
.+.+.|+.+++..+|.+. +..++-.++.++-.-.+..|+|.+.|
T Consensus 11 ~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 11 DGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFA 56 (67)
T ss_pred CCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 357889999998888665 34556666666655556678877665
No 64
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=28.60 E-value=95 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccc--ccccccchhhhhHHHHh
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRG--DFKWDRTASQLSQRWNI 250 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~--~f~pgRT~kQCR~RW~n 250 (603)
.+...=|+.|-..|..+|.+|| .++..+++. +-.--.|..||+.+...
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~ 161 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRK 161 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHH
Confidence 5788889999999999999999 889988876 11236788899888776
No 65
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=28.59 E-value=50 Score=34.12 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCccHHHHHhhcccCccchHHHHHHHhhhhhcccccccc
Q 007452 24 QRYTANTVLALLQEVAQFPDVKLDWNALVKKTSTGISNAREYQMLWRHLAYRNTLFDKL 82 (603)
Q Consensus 24 ~ry~~~t~l~~lqe~~~~~~~~~dw~~lv~kt~tgi~~areyqmlwrh~ay~~~~~~~~ 82 (603)
|-|-+++|-.+|-=|-...|..|||++|+.|+-. |+++|.|
T Consensus 33 HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~------------------HD~~E~F 73 (215)
T PF12917_consen 33 HSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALN------------------HDYPEIF 73 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH------------------TTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhc------------------cccHHHH
Confidence 5666777666665555456889999999999766 9999977
No 66
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=27.57 E-value=53 Score=37.41 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccC
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVIL 260 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP 260 (603)
+.-....||.||=-+|-.+.+.|| .+..+|-+. +|.|+-..+.+-|...++...+++-
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~--LP~rsLaSlvqyYy~~KK~~~~~s~ 240 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQA--LPHRSLASLVQYYYSWKKTREYDSQ 240 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHH--ccCccHHHHHHHHHHHHHHhhHHHH
Confidence 445678899999999999999999 999999987 8999999999999887665555543
No 67
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=26.40 E-value=1.2e+02 Score=35.86 Aligned_cols=55 Identities=15% Similarity=0.448 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccc--------ccccchhhhhHHHHhhhhccCccc
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDF--------KWDRTASQLSQRWNILRKKHGNVI 259 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f--------~pgRT~kQCR~RW~nlrRr~~~Ln 259 (603)
|..||-.|.+.+..+++++| .++..|-...+ ....|-.|.|.+|+++.++...+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 77999999999999999999 88888821100 235677899999987655444333
No 68
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=25.06 E-value=37 Score=37.82 Aligned_cols=48 Identities=4% Similarity=-0.080 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 318 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrk 318 (603)
..+|+.+|-++..+++.+ .|.. ++.|+..+|.|.-.+ ||-.|..--++
T Consensus 365 ~~~Ws~~e~ekFYKALs~---wGtd--F~LIs~lfP~R~Rkq-IKaKfi~Eek~ 412 (507)
T COG5118 365 ALRWSKKEIEKFYKALSI---WGTD--FSLISSLFPNRERKQ-IKAKFIKEEKV 412 (507)
T ss_pred CCcccHHHHHHHHHHHHH---hcch--HHHHHHhcCchhHHH-HHHHHHHHhhh
Confidence 348999999999999999 8999 999999999999999 88776554333
No 69
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.80 E-value=12 Score=37.26 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC--chhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk--~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
.+.+.||.|||.+|-+.|-..+--|... ....++.. -+||..+ |.-|||+.++++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~-L~rt~aa-c~fRwNs~vrk~ 59 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA-LKRTAAA-CGFRWNSVVRKQ 59 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhhhHHH-HHhHHHHHHHHH
Confidence 4567899999998866655522112221 12223333 4789888 999999999876
No 70
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=22.18 E-value=35 Score=27.89 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=20.0
Q ss_pred CcccccccccccccchhhhhHHHHhhhh
Q 007452 226 NWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 226 nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
-|..|+.. +...-+..+|+.||.+|+.
T Consensus 28 aw~~Ia~~-l~~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARE-LGKEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHH-HccchhHHHHHHHHHHHHH
Confidence 39999986 2224678899999998743
No 71
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=21.96 E-value=47 Score=37.06 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.4
Q ss_pred ccccccccccchhHHHHHhh--------hhHHHHHHHH
Q 007452 6 NKKQKKGSISEGDVSSLLQR--------YTANTVLALL 35 (603)
Q Consensus 6 ~~~~~k~~~se~d~~~~~~r--------y~~~t~l~~l 35 (603)
+||+..+.+|+++++.++.- |+.+.+|.+|
T Consensus 6 ~kk~~g~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl 43 (405)
T TIGR02644 6 RKKRDGKKLSDEEINFFINGYTNGEIPDYQMSALLMAI 43 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56778889999999999987 5667777766
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=21.92 E-value=1.4e+02 Score=26.09 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=35.1
Q ss_pred ccccccchhHHHHHhhh---------hHHHHHHHHHHHhcCCCCCccHHHHH
Q 007452 10 KKGSISEGDVSSLLQRY---------TANTVLALLQEVAQFPDVKLDWNALV 52 (603)
Q Consensus 10 ~k~~~se~d~~~~~~ry---------~~~t~l~~lqe~~~~~~~~~dw~~lv 52 (603)
.+..||-+++..||++. ++..|-.+|+++-.-.+.+||..+++
T Consensus 24 ~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 24 DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 45689999999999998 35678888888877677889888776
No 73
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=20.11 E-value=63 Score=35.94 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=57.5
Q ss_pred cccchhHHHHHhhhhHH-------------HH-HHHHHHHhcCCCCC--c-----cHHHHHhhcccCccchHHHHHHHhh
Q 007452 13 SISEGDVSSLLQRYTAN-------------TV-LALLQEVAQFPDVK--L-----DWNALVKKTSTGISNAREYQMLWRH 71 (603)
Q Consensus 13 ~~se~d~~~~~~ry~~~-------------t~-l~~lqe~~~~~~~~--~-----dw~~lv~kt~tgi~~areyqmlwrh 71 (603)
-+| +|+..++.|.+-. ++ +..||+++...+-. | =|-++......||+-.+=|+.|||.
T Consensus 198 NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RL 276 (391)
T cd08209 198 NLT-GPVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRL 276 (391)
T ss_pred EcC-CCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHH
Confidence 356 4578888887643 33 67789998743211 1 2778887778999999999999999
Q ss_pred hhhcccccccccCCCCCCCCCC
Q 007452 72 LAYRNTLFDKLEDNAQPLDDDS 93 (603)
Q Consensus 72 ~ay~~~~~~~~~~~~~plddds 93 (603)
..=-|.+..++ -|--++++|+
T Consensus 277 aGaD~~~~~~~-~Gk~~~~~~~ 297 (391)
T cd08209 277 AGADAVLFPSP-YGSVALSKEE 297 (391)
T ss_pred cCCCccccCCc-cCCcCCCHHH
Confidence 99999998887 5666665543
Done!