Query 007452
Match_columns 603
No_of_seqs 280 out of 1429
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 02:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.1E-29 7.1E-34 219.3 5.4 103 202-319 2-104 (105)
2 3zqc_A MYB3; transcription-DNA 99.9 9.6E-29 3.3E-33 223.9 6.6 103 204-321 2-104 (131)
3 1h8a_C AMV V-MYB, MYB transfor 99.9 1.3E-28 4.4E-33 221.7 6.7 108 197-319 20-127 (128)
4 2k9n_A MYB24; R2R3 domain, DNA 99.9 3.3E-29 1.1E-33 219.8 2.3 101 204-319 1-101 (107)
5 3osg_A MYB21; transcription-DN 99.9 7.5E-29 2.6E-33 223.5 3.3 108 199-322 6-113 (126)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 6.1E-27 2.1E-31 217.6 6.9 107 198-319 52-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.8E-25 6E-30 207.8 1.7 103 202-319 4-107 (159)
8 2dim_A Cell division cycle 5-l 99.8 3.1E-20 1E-24 152.0 4.4 66 199-273 4-69 (70)
9 2juh_A Telomere binding protei 99.7 3.5E-18 1.2E-22 155.1 4.9 90 198-294 11-103 (121)
10 2roh_A RTBP1, telomere binding 99.7 2.8E-17 9.6E-22 149.4 6.3 87 198-289 25-114 (122)
11 1ity_A TRF1; helix-turn-helix, 99.6 1.6E-16 5.4E-21 129.8 5.5 63 198-269 4-68 (69)
12 2d9a_A B-MYB, MYB-related prot 99.6 4.9E-16 1.7E-20 123.4 5.9 57 199-264 3-59 (60)
13 3sjm_A Telomeric repeat-bindin 99.6 2.5E-16 8.5E-21 128.0 4.3 52 200-251 7-58 (64)
14 1gvd_A MYB proto-oncogene prot 99.6 5E-16 1.7E-20 120.1 5.5 51 203-261 2-52 (52)
15 1h8a_C AMV V-MYB, MYB transfor 99.6 1.1E-16 3.8E-21 144.0 1.3 76 230-319 1-76 (128)
16 1guu_A C-MYB, MYB proto-oncoge 99.6 6.3E-16 2.2E-20 119.4 4.3 51 203-261 2-52 (52)
17 2aje_A Telomere repeat-binding 99.6 2.8E-15 9.5E-20 133.1 8.0 86 195-282 4-92 (105)
18 1ign_A Protein (RAP1); RAP1,ye 99.6 5.4E-16 1.9E-20 154.4 2.5 110 200-319 4-200 (246)
19 1w0t_A Telomeric repeat bindin 99.5 2.7E-15 9.3E-20 116.7 4.7 49 203-253 1-51 (53)
20 2ckx_A NGTRF1, telomere bindin 99.5 6.9E-15 2.3E-19 125.5 6.5 76 205-282 1-79 (83)
21 1x41_A Transcriptional adaptor 99.5 1.6E-14 5.6E-19 115.2 5.0 54 200-261 4-57 (60)
22 2elk_A SPCC24B10.08C protein; 99.5 4.4E-14 1.5E-18 112.2 5.0 47 202-250 7-54 (58)
23 2din_A Cell division cycle 5-l 99.4 3E-14 1E-18 115.2 1.9 59 197-266 2-60 (66)
24 2yum_A ZZZ3 protein, zinc fing 99.4 1.1E-13 3.7E-18 114.4 3.6 59 199-266 3-66 (75)
25 2llk_A Cyclin-D-binding MYB-li 99.4 2.7E-14 9.1E-19 119.3 -0.5 59 245-317 10-68 (73)
26 2cu7_A KIAA1915 protein; nucle 99.4 1.6E-13 5.4E-18 113.0 3.8 53 198-253 3-55 (72)
27 2llk_A Cyclin-D-binding MYB-li 99.3 5.4E-13 1.9E-17 111.4 4.5 53 197-253 16-68 (73)
28 2yus_A SWI/SNF-related matrix- 99.3 2.2E-12 7.7E-17 108.9 5.0 49 200-251 14-62 (79)
29 2din_A Cell division cycle 5-l 99.3 2.3E-13 7.8E-18 110.0 -2.0 56 256-319 1-56 (66)
30 3zqc_A MYB3; transcription-DNA 99.3 3.2E-12 1.1E-16 115.6 5.2 62 199-270 49-110 (131)
31 2cu7_A KIAA1915 protein; nucle 99.2 5.1E-13 1.7E-17 110.0 -1.5 58 256-320 1-58 (72)
32 2d9a_A B-MYB, MYB-related prot 99.2 2.3E-12 8E-17 102.2 1.6 55 259-320 3-58 (60)
33 3osg_A MYB21; transcription-DN 99.2 1.4E-11 5E-16 110.8 5.5 55 200-257 58-112 (126)
34 1gv2_A C-MYB, MYB proto-oncoge 99.2 1.7E-11 5.9E-16 106.4 5.7 52 199-253 51-102 (105)
35 1x58_A Hypothetical protein 49 99.2 1.8E-11 6E-16 99.7 5.0 54 202-256 6-60 (62)
36 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2E-11 7E-16 101.9 5.3 53 199-253 13-68 (73)
37 2ltp_A Nuclear receptor corepr 98.8 2.9E-12 9.9E-17 110.0 0.0 53 199-254 11-63 (89)
38 2k9n_A MYB24; R2R3 domain, DNA 99.1 1.9E-11 6.7E-16 107.0 4.6 53 199-254 48-100 (107)
39 2ltp_A Nuclear receptor corepr 98.7 4.3E-12 1.5E-16 108.9 0.0 57 256-319 8-64 (89)
40 1guu_A C-MYB, MYB proto-oncoge 99.1 3.9E-12 1.3E-16 98.1 -0.8 51 263-319 1-52 (52)
41 1gvd_A MYB proto-oncogene prot 99.1 7.7E-12 2.6E-16 96.6 0.7 52 263-319 1-52 (52)
42 2dim_A Cell division cycle 5-l 99.1 2.8E-11 9.6E-16 98.8 1.7 57 257-320 2-59 (70)
43 1x41_A Transcriptional adaptor 99.0 4.1E-11 1.4E-15 95.5 0.2 53 260-319 4-57 (60)
44 1w0t_A Telomeric repeat bindin 98.9 6.6E-11 2.3E-15 91.9 -0.9 49 264-318 1-52 (53)
45 1ity_A TRF1; helix-turn-helix, 98.9 7.4E-11 2.5E-15 96.2 -0.9 58 257-321 3-63 (69)
46 2yum_A ZZZ3 protein, zinc fing 98.9 4.8E-11 1.6E-15 98.5 -2.4 54 259-319 3-62 (75)
47 2cjj_A Radialis; plant develop 98.9 6.7E-10 2.3E-14 96.7 4.2 48 203-252 7-57 (93)
48 2eqr_A N-COR1, N-COR, nuclear 98.9 1.9E-09 6.5E-14 86.4 5.7 55 196-253 4-58 (61)
49 2elk_A SPCC24B10.08C protein; 98.8 5.4E-10 1.9E-14 88.7 1.4 51 257-314 2-54 (58)
50 3sjm_A Telomeric repeat-bindin 98.8 1.9E-10 6.6E-15 93.4 -1.4 57 257-319 3-62 (64)
51 2cqr_A RSGI RUH-043, DNAJ homo 98.7 7.1E-10 2.4E-14 92.6 -0.9 52 260-318 14-69 (73)
52 1ign_A Protein (RAP1); RAP1,ye 98.7 2.5E-09 8.6E-14 106.8 -0.4 55 263-321 6-64 (246)
53 2yus_A SWI/SNF-related matrix- 98.6 7.3E-09 2.5E-13 87.4 1.7 47 263-315 16-62 (79)
54 1x58_A Hypothetical protein 49 98.6 5.4E-09 1.9E-13 85.1 -0.5 51 263-319 6-59 (62)
55 2juh_A Telomere binding protei 98.5 1.3E-08 4.4E-13 92.5 -0.8 56 257-319 10-70 (121)
56 2ckx_A NGTRF1, telomere bindin 98.4 1E-08 3.6E-13 87.4 -2.0 48 266-319 1-53 (83)
57 2aje_A Telomere repeat-binding 98.4 2.1E-08 7.2E-13 89.1 -0.2 53 263-321 11-68 (105)
58 2cqq_A RSGI RUH-037, DNAJ homo 98.4 2E-07 6.9E-12 77.5 5.4 50 202-254 6-58 (72)
59 2cjj_A Radialis; plant develop 98.4 2.4E-08 8.2E-13 86.9 -1.5 49 264-318 7-59 (93)
60 2iw5_B Protein corest, REST co 98.4 2.5E-07 8.5E-12 91.9 5.1 52 200-254 129-180 (235)
61 2roh_A RTBP1, telomere binding 98.2 7.9E-08 2.7E-12 87.5 -2.4 51 263-319 29-84 (122)
62 1wgx_A KIAA1903 protein; MYB D 98.2 1.4E-06 4.7E-11 73.0 4.6 48 204-253 8-58 (73)
63 2eqr_A N-COR1, N-COR, nuclear 98.1 4.7E-07 1.6E-11 72.5 0.2 48 264-317 11-58 (61)
64 1fex_A TRF2-interacting telome 98.1 1.6E-06 5.5E-11 69.5 3.3 45 204-250 2-55 (59)
65 3hm5_A DNA methyltransferase 1 97.8 1.5E-06 5.3E-11 75.8 -1.3 63 240-319 16-83 (93)
66 2yqk_A Arginine-glutamic acid 97.7 6.3E-05 2.1E-09 60.7 6.0 54 198-253 3-56 (63)
67 2iw5_B Protein corest, REST co 97.7 4.8E-06 1.6E-10 82.9 -1.0 50 264-319 132-181 (235)
68 2xag_B REST corepressor 1; ami 97.6 3.8E-05 1.3E-09 83.5 4.5 51 201-254 377-427 (482)
69 3hm5_A DNA methyltransferase 1 97.6 2.7E-05 9.4E-10 67.9 2.7 52 204-258 30-86 (93)
70 2cqq_A RSGI RUH-037, DNAJ homo 97.6 1E-05 3.4E-10 67.3 -0.0 50 263-319 6-59 (72)
71 4eef_G F-HB80.4, designed hema 97.6 1.8E-05 6.3E-10 66.4 1.3 48 201-250 17-67 (74)
72 2ebi_A DNA binding protein GT- 97.5 3.3E-05 1.1E-09 65.1 1.9 60 201-260 1-71 (86)
73 1ug2_A 2610100B20RIK gene prod 97.4 0.00036 1.2E-08 60.9 7.6 53 199-253 28-82 (95)
74 2xag_B REST corepressor 1; ami 97.3 3.9E-05 1.3E-09 83.4 -0.2 48 265-318 380-427 (482)
75 2crg_A Metastasis associated p 97.1 0.00061 2.1E-08 56.1 5.6 58 200-259 4-61 (70)
76 1wgx_A KIAA1903 protein; MYB D 97.0 0.0002 6.8E-09 60.0 1.3 54 264-321 7-62 (73)
77 4a69_C Nuclear receptor corepr 96.9 0.00062 2.1E-08 59.1 4.3 52 200-254 39-90 (94)
78 2lr8_A CAsp8-associated protei 95.9 0.00015 5E-09 60.3 0.0 48 203-253 13-62 (70)
79 2lr8_A CAsp8-associated protei 95.9 0.00016 5.6E-09 59.9 0.0 47 266-317 15-62 (70)
80 1fex_A TRF2-interacting telome 96.5 0.00041 1.4E-08 55.6 -0.3 51 265-317 2-58 (59)
81 1ofc_X ISWI protein; nuclear p 96.3 0.0013 4.3E-08 68.0 2.1 107 204-317 110-274 (304)
82 1irz_A ARR10-B; helix-turn-hel 96.2 0.0043 1.5E-07 50.8 4.6 55 199-253 2-58 (64)
83 1ug2_A 2610100B20RIK gene prod 96.1 0.00042 1.4E-08 60.4 -2.4 48 266-317 34-82 (95)
84 4eef_G F-HB80.4, designed hema 96.0 0.00083 2.8E-08 56.5 -0.8 43 265-313 20-66 (74)
85 2yqk_A Arginine-glutamic acid 95.7 0.0034 1.2E-07 50.5 1.8 48 259-313 4-52 (63)
86 4iej_A DNA methyltransferase 1 95.5 0.0084 2.9E-07 52.4 3.6 51 205-256 31-84 (93)
87 4b4c_A Chromodomain-helicase-D 95.4 0.027 9.2E-07 53.8 6.9 47 200-246 3-51 (211)
88 1ofc_X ISWI protein; nuclear p 93.7 0.03 1E-06 57.9 3.1 50 203-252 211-273 (304)
89 4a69_C Nuclear receptor corepr 93.4 0.02 6.8E-07 49.6 0.9 42 266-313 44-85 (94)
90 4b4c_A Chromodomain-helicase-D 93.3 0.049 1.7E-06 52.0 3.6 30 204-233 134-163 (211)
91 2crg_A Metastasis associated p 92.5 0.031 1.1E-06 45.9 0.8 43 265-313 8-51 (70)
92 2xb0_X Chromo domain-containin 92.3 0.059 2E-06 54.8 2.7 29 205-233 169-197 (270)
93 4iej_A DNA methyltransferase 1 91.2 0.02 7E-07 50.0 -1.8 49 265-319 30-83 (93)
94 2y9y_A Imitation switch protei 89.0 0.28 9.5E-06 52.1 4.2 48 203-250 227-287 (374)
95 2y9y_A Imitation switch protei 78.4 4.8 0.00016 42.8 7.9 107 204-317 123-290 (374)
96 2xb0_X Chromo domain-containin 73.1 11 0.00037 38.3 8.6 38 204-241 3-42 (270)
97 2ebi_A DNA binding protein GT- 47.5 0.55 1.9E-05 39.1 -5.2 52 265-317 4-64 (86)
98 2ct5_A Zinc finger BED domain 34.2 12 0.00042 31.0 1.0 22 67-88 47-70 (73)
99 1irz_A ARR10-B; helix-turn-hel 27.4 13 0.00043 30.4 -0.1 43 265-311 7-52 (64)
100 2rq5_A Protein jumonji; develo 25.0 31 0.001 31.0 2.0 59 214-282 46-114 (121)
101 3li6_A Calcium-binding protein 24.5 1.3E+02 0.0044 21.5 5.1 45 9-53 12-60 (66)
102 3i4p_A Transcriptional regulat 23.0 47 0.0016 29.9 2.9 49 210-261 3-57 (162)
103 1k2h_A S100A1, S-100 protein, 22.9 1.2E+02 0.0042 23.4 5.0 44 9-52 22-75 (93)
104 2kz2_A Calmodulin, CAM; TR2C, 21.6 1.2E+02 0.0041 24.2 4.8 44 10-53 42-89 (94)
105 1k8u_A S100A6, calcyclin, CACY 21.3 78 0.0027 24.3 3.5 44 9-52 23-74 (90)
106 2kn2_A Calmodulin; S MAPK phos 21.3 98 0.0034 24.0 4.1 45 9-53 21-69 (92)
107 2k5c_A Uncharacterized protein 20.4 36 0.0012 29.4 1.4 27 37-64 7-35 (95)
108 5pal_A Parvalbumin; calcium-bi 20.4 92 0.0032 24.9 3.9 43 10-52 54-103 (109)
109 2lv7_A Calcium-binding protein 20.3 99 0.0034 25.7 4.1 44 10-53 49-96 (100)
110 3fs7_A Parvalbumin, thymic; ca 20.2 1E+02 0.0034 24.6 4.0 15 11-25 56-70 (109)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.95 E-value=2.1e-29 Score=219.34 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=97.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 281 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~ 281 (603)
.++++||+|||++|+++|++||.++|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|++++.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTCCC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh--hcCCCHHHHHHHHHh------ccCCc-ccccCCCHHHHHHHHHHHH
Confidence 47899999999999999999998899999987 899999999999999 99999 9999999999999999999
Q ss_pred hhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 282 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 282 ~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
. ||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 73 ~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~~~~~ 104 (105)
T 1gv2_A 73 R---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 104 (105)
T ss_dssp H---HSSC--HHHHHTTCTTCCHHH-HHHHHHHHTC--
T ss_pred H---hCCC--HHHHHHHcCCCCHHH-HHHHHHHHHhcc
Confidence 9 9999 999999999999999 999999988864
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.95 E-value=9.6e-29 Score=223.90 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHhh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 283 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~a 283 (603)
|++||+|||++|+.+|.+||.++|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|+++|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~~~~- 71 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF--LPNRSPKQCRERWFN------HLDPA-VVKHAWTPEEDETIFRNYLK- 71 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS--CTTSCHHHHHHHHHH------HTSTT-CCCSCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH--HCCCCHHHHHHHHhh------ccCcc-ccCCCCCHHHHHHHHHHHHH-
Confidence 789999999999999999999999999987 899999999999999 99999 99999999999999999999
Q ss_pred cCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCCcC
Q 007452 284 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 284 l~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas 321 (603)
||++ |+.||.+|||||+++ |+|||+.++++...
T Consensus 72 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 72 --LGSK--WSVIAKLIPGRTDNA-IKNRWNSSISKRIS 104 (131)
T ss_dssp --SCSC--HHHHTTTSTTCCHHH-HHHHHHHTTGGGCC
T ss_pred --HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHhh
Confidence 9999 999999999999999 99999999998854
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.95 E-value=1.3e-28 Score=221.73 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=101.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHH
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 276 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~L 276 (603)
.+.+..++++||+|||++|+++|++||.++|..||.. +++||++||++||.+ +|+|. +++++||.|||++|
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L 90 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRII 90 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH--SSSCCHHHHHHHHHH------TTCSS-SCCSCCCHHHHHHH
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH--hcCCcHHHHHHHHHH------hcccc-cccccCCHHHHHHH
Confidence 3567778999999999999999999998899999987 899999999999999 99999 99999999999999
Q ss_pred HHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 277 RHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 277 leav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
++++.. ||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 91 ~~~~~~---~G~~--W~~Ia~~l~gRt~~~-~k~r~~~~~~~~ 127 (128)
T 1h8a_C 91 YQAHKR---LGNR--WAEIAKLLPGRTDNA-VKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHH---HCSC--HHHHGGGSTTCCHHH-HHHHHHTTTTC-
T ss_pred HHHHHH---HCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 999999 9999 999999999999999 999999999875
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.95 E-value=3.3e-29 Score=219.80 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHhh
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 283 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~a 283 (603)
|++||+|||++|+.+|.+||.++|..||.. +++||++||++||.+ +|+|+ +++++||.|||++|++++..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~p~-i~~~~WT~eEd~~L~~~~~~- 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL--MITRNPRQCRERWNN------YINPA-LRTDPWSPEEDMLLDQKYAE- 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH--TTTSCHHHHHHHHHH------HSSSC-CTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh--cCCCCHHHHHHHHHH------HHccc-ccccccCHHHHHHHHHHHHH-
Confidence 589999999999999999998899999987 899999999999999 99999 99999999999999999999
Q ss_pred cCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 284 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 284 l~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 71 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~r~~ 101 (107)
T 2k9n_A 71 --YGPK--WNKISKFLKNRSDNN-IRNRWMMIARHR 101 (107)
T ss_dssp --TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHH
T ss_pred --hCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhhH
Confidence 9999 999999999999999 999999887764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.95 E-value=7.5e-29 Score=223.49 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=101.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHH
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 278 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lle 278 (603)
++..++++||+|||++|+.+|.+||. +|..||.. +++|+++||++||.+ +|+|. +++++||.|||++|++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT--FPNRNARQCRDRWKN------YLAPS-ISHTPWTAEEDALLVQ 75 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT--CTTCCHHHHHHHHHH------HTSTT-SCCSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH--cCCCCHHHHHHHHhh------hcccc-cccccCCHHHHHHHHH
Confidence 45678999999999999999999995 99999987 899999999999999 99999 9999999999999999
Q ss_pred HHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCCcCC
Q 007452 279 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASS 322 (603)
Q Consensus 279 av~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas~ 322 (603)
+|.+ ||.+ |+.||.+|||||+++ |||||+.++++...|
T Consensus 76 ~v~~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 76 KIQE---YGRQ--WAIIAKFFPGRTDIH-IKNRWVTISNKLGIP 113 (126)
T ss_dssp HHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHHHHHHTTC-
T ss_pred HHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHhcCCC
Confidence 9999 9999 999999999999999 999999999887554
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.93 E-value=6.1e-27 Score=217.60 Aligned_cols=107 Identities=26% Similarity=0.336 Sum_probs=101.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHH
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 277 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Ll 277 (603)
+.+..++++||+|||++|+.+|++||.++|..||.. +++||+.||++||.+ +|+|. +++++||.|||++|+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~WT~eEd~~L~ 122 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE-VKKTSWTEEEDRIIY 122 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT--STTCCHHHHHHHHHH------TTCTT-SCCSCCCHHHHHHHH
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHH--cCCCCHHHHHHHHHH------HhCcc-ccccCCChHHHHHHH
Confidence 355678999999999999999999998899999987 899999999999999 99999 999999999999999
Q ss_pred HHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 278 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 278 eav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
+++.. ||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 123 ~~~~~---~g~~--W~~Ia~~l~gRt~~~-~knr~~~~~r~~ 158 (159)
T 1h89_C 123 QAHKR---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 158 (159)
T ss_dssp HHHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHTTTCC-
T ss_pred HHHHH---HCCC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 99999 9999 999999999999999 999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.90 E-value=1.8e-25 Score=207.76 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 281 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~ 281 (603)
.++++||+|||++|+++|.+||.++|..||.. +++|+++||++||.+ +|+|+ +++++||+|||++|+++|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~l~p~-~~~~~Wt~eEd~~L~~~v~ 74 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK------VLNPE-LIKGPWTKEEDQRVIKLVQ 74 (159)
T ss_dssp -----------------------------------------CHHHHHHT------TTCTT-CCCSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH------ccCCC-cCCCCCChHHHHHHHHHHH
Confidence 46899999999999999999999999999987 899999999999999 99999 9999999999999999999
Q ss_pred hhcCCCC-CCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 282 LALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 282 ~al~~G~-Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
. ||. + |..||.+|||||+.+ |++||+..+++.
T Consensus 75 ~---~g~~~--W~~Ia~~l~~Rt~~q-cr~Rw~~~l~p~ 107 (159)
T 1h89_C 75 K---YGPKR--WSVIAKHLKGRIGKQ-CRERWHNHLNPE 107 (159)
T ss_dssp H---HCSCC--HHHHHHTSTTCCHHH-HHHHHHHTTCTT
T ss_pred H---hCccc--HHHHHHHcCCCCHHH-HHHHHHHHhCcc
Confidence 9 986 6 999999999999999 999999888765
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=151.97 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHH
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQ 273 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EED 273 (603)
.+..++++||+|||++|+.+|++||.++|..||.+ +++||++|||+||.+ +|+|. |++++||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--l~~Rt~~qcr~Rw~~------~L~p~-i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWYE------WLDPS-IKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH--STTCCHHHHHHHHHH------TSCSS-SCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--hcCCCHHHHHHHHHH------HcCCc-ccCCCCChHhc
Confidence 55678999999999999999999999999999987 899999999999999 99999 99999999987
No 9
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=3.5e-18 Score=155.08 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccchhhhhHHHHhhhhccCcccCCCCCCC-CCCHHHHH
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSG-SQLSEAQL 274 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f--~pgRT~kQCR~RW~nlrRr~~~LnP~~Ikkg-pWT~EEDe 274 (603)
...++++++||+|||+.|+++|++||.|+|..|++.+| |++||+.||++||+++.++ ..+.|. ++++ +|+.+|++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~-~~~~p~-~krg~~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT-ASIAPQ-QRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH-HHTCST-TCCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh-hccCCc-ccCCCCCCHHHHH
Confidence 46788999999999999999999999999999999732 4899999999999997665 456798 9999 99999999
Q ss_pred HHHHHHHhhcCCCCCCchhh
Q 007452 275 AARHAMSLALDMPVKNITAS 294 (603)
Q Consensus 275 ~Lleav~~al~~G~Kk~Ws~ 294 (603)
+|+.++.. +|++ |++
T Consensus 89 rv~~~h~~---~gn~--~~~ 103 (121)
T 2juh_A 89 RVLAAHAY---WSQQ--QGK 103 (121)
T ss_dssp HHHHHHHH---HHHH--HCC
T ss_pred HHHHHHHH---Hccc--hhc
Confidence 99999999 9999 876
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.68 E-value=2.8e-17 Score=149.37 Aligned_cols=87 Identities=23% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHH-HH
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEA-QL 274 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f--~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EE-De 274 (603)
...++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.|+. .++|+ ++++.|+++| ++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-~~~p~-~kr~~~~p~e~~~ 102 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-SIAPQ-QRRGAPVPQELLD 102 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-HSCTT-TCCCSSCCHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cCCcc-ccCCCCCCHHHHH
Confidence 35678999999999999999999999999999999732 58999999999999976543 46999 9999999999 78
Q ss_pred HHHHHHHhhcCCCCC
Q 007452 275 AARHAMSLALDMPVK 289 (603)
Q Consensus 275 ~Lleav~~al~~G~K 289 (603)
+|++++.. +|++
T Consensus 103 ~v~~~h~~---~g~~ 114 (122)
T 2roh_A 103 RVLAAQAY---WSVD 114 (122)
T ss_dssp HHHHHHHH---HHSS
T ss_pred HHHHHHHH---HhhH
Confidence 89999999 7776
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=1.6e-16 Score=129.76 Aligned_cols=63 Identities=38% Similarity=0.533 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc--ccchhhhhHHHHhhhhccCcccCCCCCCCCCC
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRKKHGNVILGSNSSGSQL 269 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p--gRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT 269 (603)
..+++++++||+|||++|+.+|++||.++|..||.. ++ +||+.||++||++ +|+|. |.++...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~------~l~p~-i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRT------MKKLK-LISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH--SCCSSCCHHHHHHHHHH------HHHTS-CCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH--cCcCCCCHHHHHHHHHH------HcCCC-CCCCCCC
Confidence 467889999999999999999999999999999987 78 9999999999999 89998 8877653
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.9e-16 Score=123.38 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCC
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNS 264 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~Ik 264 (603)
.+..++++||+|||++|+++|.+||.++|..||++ |++||+.||++||.+ +|+|+ |+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~l~p~-i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH--FPNRTDQQCQYRWLR------VLSGP-SS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH--CSSSCHHHHHHHHHH------TSCSS-SC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--ccCCCHHHHHHHHHH------HcCCc-cC
Confidence 45678999999999999999999998899999987 899999999999999 99998 64
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=2.5e-16 Score=128.01 Aligned_cols=52 Identities=38% Similarity=0.613 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
...+|++||+|||++|+++|++||.++|..||+.+++.+||+.||++||++|
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999987445699999999999994
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=5e-16 Score=120.08 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCC
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 261 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~ 261 (603)
++++||+|||++|+++|++||.++|..||+. +++||++||++||.+ +|+|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN------HLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH------TTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH--cCCCCHHHHHHHHHH------HcCcC
Confidence 6899999999999999999998899999987 899999999999999 99985
No 15
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.60 E-value=1.1e-16 Score=144.00 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=51.1
Q ss_pred ccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCcc
Q 007452 230 ILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMN 309 (603)
Q Consensus 230 IAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIK 309 (603)
||+. +++||+.||++||.+ +|+|+ +++++||+|||++|+++|.. ||.+ .|..||.+|||||+.+ |+
T Consensus 1 Ia~~--~~~Rt~~qC~~Rw~~------~l~p~-~~k~~Wt~eED~~L~~~v~~---~g~~-~W~~Ia~~l~~Rt~~q-cr 66 (128)
T 1h8a_C 1 MEAV--IKNRTDVQCQHRWQK------VLNPE-LNKGPWTKEEDQRVIEHVQK---YGPK-RWSDIAKHLKGRIGKQ-CR 66 (128)
T ss_dssp -----------------------------CTT-CCCSCCCHHHHHHHHHHHHH---TCSC-CHHHHHHHSSSCCHHH-HH
T ss_pred Cccc--cCCCCHHHHHHHHHH------hhCCC-CCCCCCCHHHHHHHHHHHHH---HCCC-CHHHHHHHhcCCcHHH-HH
Confidence 6765 899999999999999 99999 99999999999999999999 9963 3999999999999999 99
Q ss_pred ccCCCCCCCC
Q 007452 310 NPVPSTANAE 319 (603)
Q Consensus 310 NRwns~lrke 319 (603)
+||...+++.
T Consensus 67 ~Rw~~~l~p~ 76 (128)
T 1h8a_C 67 ERWHNHLNPE 76 (128)
T ss_dssp HHHHHTTCSS
T ss_pred HHHHHhcccc
Confidence 9999888765
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=6.3e-16 Score=119.36 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCC
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 261 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~ 261 (603)
++++||+|||++|+++|++||.++|..||+. +++||+.||++||.+ +|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~------~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK------VLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT--STTCCHHHHHHHHHH------HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH------HcCcC
Confidence 6899999999999999999998899999987 899999999999999 89885
No 17
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.58 E-value=2.8e-15 Score=133.14 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc--cccccchhhhhHHHHhhhhccCcccCCCCCCCCCCHHH
Q 007452 195 GGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGD--FKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEA 272 (603)
Q Consensus 195 s~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~--f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EE 272 (603)
.....+++++++||+|||+.|+++|++||.|+|..|++.+ ++++||+.||++||++|.|+. .++|. ++++.-++.|
T Consensus 4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~-~~~p~-~~rg~~~P~~ 81 (105)
T 2aje_A 4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA-KISPQ-QRRGEPVPQE 81 (105)
T ss_dssp -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT-TCCTT-TTTCCSCCCH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-cCCcc-cccCCCCCHH
Confidence 3345788999999999999999999999999999999974 258999999999999987754 56899 9999877766
Q ss_pred HHH-HHHHHHh
Q 007452 273 QLA-ARHAMSL 282 (603)
Q Consensus 273 De~-Lleav~~ 282 (603)
-.. +++++..
T Consensus 82 ~l~rv~~~~~~ 92 (105)
T 2aje_A 82 LLNRVLNAHGY 92 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 655 8888888
No 18
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.56 E-value=5.4e-16 Score=154.38 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=88.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccchhhhhHHHHhhhhccCcccCCCCC----------
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGN-----WANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNS---------- 264 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~n-----W~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~Ik---------- 264 (603)
+..++++||+|||++|+++|+++|..+ |..||++ |+|||+.|||+||+. +|.+. ++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~------~L~~~-ln~vy~~ded~~ 74 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY--VPNHTGNSIRHRFRV------YLSKR-LEYVYEVDKFGK 74 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT--STTSCHHHHHHHHHH------TTGGG-CCCEECBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH--cCCCCHHHHHHHHHH------HHhhh-cccccccCcchh
Confidence 345788999999999999999998643 9999987 999999999999999 55555 54
Q ss_pred -------------------CCCCCHHHHHHHHHHHHhhc------------------------------CCCC-------
Q 007452 265 -------------------SGSQLSEAQLAARHAMSLAL------------------------------DMPV------- 288 (603)
Q Consensus 265 -------------------kgpWT~EEDe~Lleav~~al------------------------------~~G~------- 288 (603)
+..||.+||-.|...+.+.+ .++.
T Consensus 75 Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (246)
T 1ign_A 75 LVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSE 154 (246)
T ss_dssp BCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------
T ss_pred hhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCC
Confidence 68899999999998887611 0111
Q ss_pred ----------------CCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 289 ----------------KNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 289 ----------------Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
+-.|..|+..+|+||+++ |||||...+++.
T Consensus 155 ~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~S-WRdRyrKfl~~~ 200 (246)
T 1ign_A 155 PNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENA-WRDRFRKFLLAY 200 (246)
T ss_dssp ------CCCCCCCCCCTTHHHHHHHHTTTSCHHH-HHHHHHHTHHHH
T ss_pred cchhhhccccccCcchHHHHHHHHHHCCCCChhh-HHHHHHHHHhhc
Confidence 014999999999999999 999999888765
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=2.7e-15 Score=116.67 Aligned_cols=49 Identities=47% Similarity=0.802 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccc--ccchhhhhHHHHhhhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRK 253 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p--gRT~kQCR~RW~nlrR 253 (603)
++++||+|||++|+.+|++||.++|..||.. ++ +||+.||++||+++.|
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999999999999987 78 9999999999999655
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.53 E-value=6.9e-15 Score=125.54 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccchhhhhHHHHhhhhccCcccCCCCCCC-CCCHHHHHHHHHHHH
Q 007452 205 KPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRKKHGNVILGSNSSG-SQLSEAQLAARHAMS 281 (603)
Q Consensus 205 g~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f--~pgRT~kQCR~RW~nlrRr~~~LnP~~Ikkg-pWT~EEDe~Lleav~ 281 (603)
++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.|+. .++|. ++++ +...+....++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~~p~-~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SIAPQ-QRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HSCGG-GCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cCCcc-cccCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999998633 78999999999999987644 45887 6555 777888888999988
Q ss_pred h
Q 007452 282 L 282 (603)
Q Consensus 282 ~ 282 (603)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 7
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=1.6e-14 Score=115.17 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=49.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCC
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILG 261 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~ 261 (603)
...++++||+|||++|+++|++||.++|..||++ +++||++||++||.+ +|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~r~~~------~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ--MCTKTKEECEKHYMK------YFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH--HTTSCHHHHHHHHHH------HTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH--hCCCCHHHHHHHHHH------HccCC
Confidence 4568899999999999999999999999999987 899999999999999 77665
No 22
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=4.4e-14 Score=112.21 Aligned_cols=47 Identities=32% Similarity=0.466 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc-ccchhhhhHHHHh
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI 250 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p-gRT~kQCR~RW~n 250 (603)
..+++||+|||++|+++|++||.++|..||++ ++ +||++|||+||.+
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~--~~~~Rt~~qcr~r~~~ 54 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGLGNWADIADY--VGNARTKEECRDHYLK 54 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH--HCSSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--HCCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999987 88 9999999999998
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3e-14 Score=115.20 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCC
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSG 266 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~Ikkg 266 (603)
++.+..++++||+|||++|+.+|+.|| .+|..||+ ++|||++|||+||.+ +|+|. ++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~---~~gRt~~qcr~Rw~~------~l~~~-~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP---IIGRTAAQCLEHYEF------LLDKA-AQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH---HHSSCHHHHHHHHHH------HHHHH-HHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc---ccCcCHHHHHHHHHH------HhChH-hcCC
Confidence 467888999999999999999999999 59999997 358999999999999 77776 5443
No 24
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=114.40 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCC
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGE-----GNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSG 266 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~-----~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~Ikkg 266 (603)
++...+++||+|||++|+++|.+||. ++|..||++ +++||+.||++||++ ||.+. ++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~------~l~~~-~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQK------YFIKL-TKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHH------HHGGG-STTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHH------HHHHH-HhcC
Confidence 46678899999999999999999997 789999987 899999999999998 56555 4443
No 25
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-14 Score=119.32 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=47.6
Q ss_pred hHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 245 SQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 245 R~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
.-||.+ +|||+ +++++||+|||++|++++.+ +|++ |+.||++| |||+++ |||||+.+.+
T Consensus 10 ~~~~~~------~ldP~-i~k~~wT~EED~~L~~l~~~---~G~k--W~~IA~~l-gRt~~q-~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLY------FQGDR-NHVGKYTPEEIEKLKELRIK---HGND--WATIGAAL-GRSASS-VKDRCRLMKD 68 (73)
T ss_dssp ---------------CC-CCCCSSCHHHHHHHHHHHHH---HSSC--HHHHHHHH-TSCHHH-HHHHHHHCSC
T ss_pred Ccceee------ecCCC-CCCCCCCHHHHHHHHHHHHH---HCCC--HHHHHHHh-CCCHHH-HHHHHHHHHH
Confidence 347888 99999 99999999999999999999 9999 99999999 999999 9999986544
No 26
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=1.6e-13 Score=112.98 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
..+..++++||+|||++|+++|.+|| .+|..||++ +++||+.||++||+++.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~--~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKL--IGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHH--HSSSCHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 35677899999999999999999999 599999986 899999999999998644
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=111.43 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 197 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 197 s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
.+.++.++++||+|||++|+++|++|| .+|..||+. + |||+.||++||+.|++
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~--l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAA--L-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHH--H-TSCHHHHHHHHHHCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHH--h-CCCHHHHHHHHHHHHH
Confidence 356788999999999999999999999 669999987 7 9999999999998544
No 28
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=108.86 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 251 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl 251 (603)
.+..+++||+|||++|+++|++|| ++|..||++ +++||+.||++||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~--v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEH--VGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH--HSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHh
Confidence 345689999999999999999999 999999987 8999999999999984
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-13 Score=110.03 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=53.0
Q ss_pred CcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 256 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 256 ~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
++|+|. +++++||.|||++|++++.. +|.+ |..||. ++|||+++ |++||+.++++.
T Consensus 1 g~L~P~-~~k~~WT~eED~~L~~~~~~---~g~~--W~~Ia~-~~gRt~~q-cr~Rw~~~l~~~ 56 (66)
T 2din_A 1 GSSGSS-GKKTEWSREEEEKLLHLAKL---MPTQ--WRTIAP-IIGRTAAQ-CLEHYEFLLDKA 56 (66)
T ss_dssp CCCSSS-SSCCCCCHHHHHHHHHHHHH---CTTC--HHHHHH-HHSSCHHH-HHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHH---cCCC--HHHHhc-ccCcCHHH-HHHHHHHHhChH
Confidence 589999 99999999999999999999 9999 999999 99999999 999999888765
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.26 E-value=3.2e-12 Score=115.60 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCcccCCCCCCCCCCH
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLS 270 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~ 270 (603)
.+..++++||+|||++|+.+|.+|| ++|..||++ ++|||+.||++||++ +|++. +..++|+.
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~------~l~~~-~~~~~~~~ 110 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKL--IPGRTDNAIKNRWNS------SISKR-ISTNSNHK 110 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTT--STTCCHHHHHHHHHH------TTGGG-CCCCTTSC
T ss_pred CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHH------HHHHH-hhcCCCcc
Confidence 4566789999999999999999999 899999986 899999999999999 88887 88888875
No 31
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=5.1e-13 Score=109.97 Aligned_cols=58 Identities=7% Similarity=-0.060 Sum_probs=54.1
Q ss_pred CcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCCc
Q 007452 256 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 320 (603)
Q Consensus 256 ~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkea 320 (603)
+.++|. +++++||.|||++|+++|.+ ||.+ |..||.+|||||+++ |||||+.++++..
T Consensus 1 gs~~p~-~~~~~WT~eEd~~l~~~~~~---~G~~--W~~Ia~~~~~Rt~~q-~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 1 GSSGSS-GYSVKWTIEEKELFEQGLAK---FGRR--WTKISKLIGSRTVLQ-VKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCS-SCCCCCCHHHHHHHHHHHHH---TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHHS
T ss_pred CCCCCC-cCCCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHH
Confidence 367898 99999999999999999999 9999 999999999999999 9999999887763
No 32
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.3e-12 Score=102.16 Aligned_cols=55 Identities=5% Similarity=-0.133 Sum_probs=51.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCCCCCCCCCccccCCCCCCCCc
Q 007452 259 ILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEA 320 (603)
Q Consensus 259 nP~~IkkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkea 320 (603)
+|. +++++||+|||++|+++|.+ || ++ |..||.+|+|||+.+ |++||+.+|++..
T Consensus 3 ~p~-~~k~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGS-SGKVKWTHEEDEQLRALVRQ---FGQQD--WKFLASHFPNRTDQQ-CQYRWLRVLSGPS 58 (60)
T ss_dssp SCC-CCCSCCCHHHHHHHHHHHHH---TCTTC--HHHHHHHCSSSCHHH-HHHHHHHTSCSSS
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHccCCCHHH-HHHHHHHHcCCcc
Confidence 577 99999999999999999999 99 57 999999999999999 9999999999873
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.18 E-value=1.4e-11 Score=110.80 Aligned_cols=55 Identities=36% Similarity=0.611 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCc
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN 257 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~ 257 (603)
+..++++||+|||++|+.+|.+|| .+|..||+. ++|||+.||++||..|+++.+.
T Consensus 58 p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 58 PSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKF--FPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTT--STTCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHHhcCC
Confidence 344688999999999999999999 899999987 8999999999999998776544
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.18 E-value=1.7e-11 Score=106.38 Aligned_cols=52 Identities=31% Similarity=0.562 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
.+..++++||+|||++|+.+|.+|| .+|..||++ ++|||+.||++||..+.|
T Consensus 51 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 51 NPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTT--CTTCCHHHHHHHHHHHTC
T ss_pred CCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHHHh
Confidence 4556789999999999999999999 799999987 899999999999998544
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.17 E-value=1.8e-11 Score=99.67 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccc-ccccccchhhhhHHHHhhhhccC
Q 007452 202 KKRKPWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNILRKKHG 256 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~-~f~pgRT~kQCR~RW~nlrRr~~ 256 (603)
+.+++||+|||+.|+++|++||. +|..|+.. -|+++||..++++||++|.|+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence 37899999999999999999995 99999964 45899999999999999888543
No 36
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=2e-11 Score=101.88 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhHHHHhhhh
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
+.+..+++||+|||++|+.++.+||. .+|.+||++ ++|||.+||++||.+|.+
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~--vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC--VPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG--CSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 34567889999999999999999994 579999987 999999999999998644
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-12 Score=109.96 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhc
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
.+...+++||+|||++|+.+|.+|| .+|..||.+ ++|||+.||++||.++.|+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~--l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARM--VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 3455799999999999999999999 589999987 8999999999999995443
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=1.9e-11 Score=106.98 Aligned_cols=53 Identities=25% Similarity=0.591 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhc
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
.+..++++||+|||++|+.+|.+|| .+|..||++ ++|||+.||++||..+.|+
T Consensus 48 ~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 48 NPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKF--LKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHHhC-cCHHHHHHH--CCCCCHHHHHHHHHHHHhh
Confidence 4556789999999999999999999 689999986 8999999999999987654
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-12 Score=108.92 Aligned_cols=57 Identities=9% Similarity=-0.127 Sum_probs=54.0
Q ss_pred CcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 256 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 256 ~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
..++|. +++++||.|||++|+++|.+ ||++ |..||.+|||||+++ |+|||+..+++.
T Consensus 8 ~~~~p~-~~~~~WT~eEd~~l~~~~~~---~G~~--W~~IA~~l~gRt~~q-~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGREN-LYFQGWTEEEMGTAKKGLLE---HGRN--WSAIARMVGSKTVSQ-CKNFYFNYKKRQ 64 (89)
Confidence 367888 99999999999999999999 9999 999999999999999 999999999876
No 40
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.13 E-value=3.9e-12 Score=98.09 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
|++++||.|||++|+++|.+ ||. + |..||.+|||||+.+ |++||+.+|++.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQ---NGTDD--WKVIANYLPNRTDVQ-CQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHTSTTCCHHH-HHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 57899999999999999999 998 7 999999999999999 999999888763
No 41
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.12 E-value=7.7e-12 Score=96.55 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
|++++||+|||++|+++|.. ||.+ .|..||.+|+|||+.+ |++||+..|++.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~---~G~~-~W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQK---YGPK-RWSVIAKHLKGRIGKQ-CRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHH---HCTT-CHHHHHTTSTTCCHHH-HHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---HCcC-hHHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 57899999999999999999 9972 3999999999999999 999999998863
No 42
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.8e-11 Score=98.81 Aligned_cols=57 Identities=4% Similarity=-0.123 Sum_probs=52.3
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCCCCCCCCCccccCCCCCCCCc
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEA 320 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrkea 320 (603)
...|. +++++||.|||++|+++|.+ || .+ |..||.+|+|||+.+ |++||+..|++..
T Consensus 2 ss~~~-~k~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~l~~Rt~~q-cr~Rw~~~L~p~i 59 (70)
T 2dim_A 2 SSGSS-GKGGVWRNTEDEILKAAVMK---YGKNQ--WSRIASLLHRKSAKQ-CKARWYEWLDPSI 59 (70)
T ss_dssp CSCSC-STTCCCCHHHHHHHHHHHHH---TCSSC--HHHHHHHSTTCCHHH-HHHHHHHTSCSSS
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHhcCCCHHH-HHHHHHHHcCCcc
Confidence 34677 99999999999999999999 99 67 999999999999999 9999999998763
No 43
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.00 E-value=4.1e-11 Score=95.47 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 260 LGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 260 P~~IkkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
|. +.+++||.|||++|+++|.+ || .+ |..||.+|||||+.+ |++||+..+.+.
T Consensus 4 ~~-~~~~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GS-SGDPSWTAQEEMALLEAVMD---CGFGN--WQDVANQMCTKTKEE-CEKHYMKYFSGP 57 (60)
T ss_dssp CC-CCCSSSCHHHHHHHHHHHHH---TCTTC--HHHHHHHHTTSCHHH-HHHHHHHHTTCS
T ss_pred CC-CCCCCCCHHHHHHHHHHHHH---HCcCc--HHHHHHHhCCCCHHH-HHHHHHHHccCC
Confidence 55 89999999999999999999 99 67 999999999999999 999999877654
No 44
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.93 E-value=6.6e-11 Score=91.89 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCC--CCCCCCCccccCCCCCCC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANA 318 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LP--GRTdnqtIKNRwns~lrk 318 (603)
++++||+|||++|+++|.. || .+ |..|+.+|+ |||+.+ |++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCCCHHH-HHHHHHHHHcc
Confidence 4789999999999999999 99 57 999999999 999999 99999887764
No 45
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.93 E-value=7.4e-11 Score=96.20 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=52.2
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCC--CCCCCCCccccCCCCCCCCcC
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LP--GRTdnqtIKNRwns~lrkeas 321 (603)
...|. .++++||+|||++|+++|.+ || .+ |..|+.+|+ |||+.+ |++||+.+|++...
T Consensus 3 ~~~~~-~~r~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 3 EKHRA-RKRQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKLKLI 63 (69)
T ss_dssp CTTCS-SSCCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTSCC
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHH---HCCCc--HHHHHHHcCcCCCCHHH-HHHHHHHHcCCCCC
Confidence 34566 88999999999999999999 99 57 999999999 999999 99999999888743
No 46
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.8e-11 Score=98.51 Aligned_cols=54 Identities=9% Similarity=-0.032 Sum_probs=49.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCC------CCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 259 ILGSNSSGSQLSEAQLAARHAMSLALDMP------VKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 259 nP~~IkkgpWT~EEDe~Lleav~~al~~G------~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
+|+ +++++||.|||++|+++|.+ || .+ |..||.+|+|||+.+ |++||+..+.+.
T Consensus 3 ~p~-~~~~~WT~eEd~~L~~~v~~---~g~~~~~~~~--W~~IA~~~~~Rt~~q-cr~r~~~~l~~~ 62 (75)
T 2yum_A 3 SGS-SGNQLWTVEEQKKLEQLLIK---YPPEEVESRR--WQKIADELGNRTAKQ-VASQVQKYFIKL 62 (75)
T ss_dssp CCC-CCSSCCCHHHHHHHHHHHHH---SCCCSCHHHH--HHHHHHHHSSSCHHH-HHHHHHHHHGGG
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHH---hCCCCCCccc--HHHHHHHhCCCCHHH-HHHHHHHHHHHH
Confidence 577 99999999999999999999 99 56 999999999999999 999997776654
No 47
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.90 E-value=6.7e-10 Score=96.67 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccccccchhhhhHHHHhhh
Q 007452 203 KRKPWTAEEDLELISAVQKCG---EGNWANILRGDFKWDRTASQLSQRWNILR 252 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G---~~nW~kIAk~~f~pgRT~kQCR~RW~nlr 252 (603)
.+++||+|||++|..++.+|| ..+|.+||.. ++|||.+||++||.+|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARA--VEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--STTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 367999999999999999998 4579999987 89999999999999874
No 48
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.9e-09 Score=86.40 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 196 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 196 ~s~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
+..+.|+...+||+|||++|.+++.+|| .+|..||.+ +++||..||.++|...+|
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~--l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASY--LERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHH--CTTSCHHHHHHHHHHHTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHhcC
Confidence 3457788999999999999999999999 799999966 999999999999987444
No 49
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.84 E-value=5.4e-10 Score=88.65 Aligned_cols=51 Identities=8% Similarity=-0.069 Sum_probs=45.9
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchhhhhccCC-CCCCCCCccccCCC
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA-GTTSSATMNNPVPS 314 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G-~Kk~Ws~IA~~LP-GRTdnqtIKNRwns 314 (603)
..++. +.+++||.|||++|+++|.+ || .+ |..||.+|+ |||+.+ |++||..
T Consensus 2 ~~~~p-~~~~~WT~eED~~L~~~v~~---~G~~~--W~~IA~~~~~~Rt~~q-cr~r~~~ 54 (58)
T 2elk_A 2 SSGSS-GFDENWGADEELLLIDACET---LGLGN--WADIADYVGNARTKEE-CRDHYLK 54 (58)
T ss_dssp CSCCC-SCCCCCCHHHHHHHHHHHHH---TTTTC--HHHHHHHHCSSCCHHH-HHHHHHH
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHHCCCCCHHH-HHHHHHH
Confidence 34555 77899999999999999999 99 67 999999999 999999 9999965
No 50
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.84 E-value=1.9e-10 Score=93.37 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=45.4
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhccCC--CCCCCCCccccCCCCCCCC
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTA--GTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~LP--GRTdnqtIKNRwns~lrke 319 (603)
++.+...++++||+|||++|+++|.+ ||. + |..|+..+| |||+.+ |++||..++++.
T Consensus 3 ~~~~~~~kk~~WT~eED~~L~~~V~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~nl~k~g 62 (64)
T 3sjm_A 3 HMTTNITKKQKWTVEESEWVKAGVQK---YGEGN--WAAISKNYPFVNRTAVM-IKDRWRTMKRLG 62 (64)
T ss_dssp -------CCCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHc---cCCCc--hHHHHhhcCCCCCCHHH-HHHHHHHHhccC
Confidence 34444367899999999999999999 995 6 999999876 999999 999998877654
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=7.1e-10 Score=92.58 Aligned_cols=52 Identities=6% Similarity=-0.073 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCC----CCCchhhhhccCCCCCCCCCccccCCCCCCC
Q 007452 260 LGSNSSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 318 (603)
Q Consensus 260 P~~IkkgpWT~EEDe~Lleav~~al~~G----~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrk 318 (603)
+. +.+++||.+||++|++++.. || .+ |..||.+|||||+++ |++||+.++..
T Consensus 14 ~~-~~~~~WT~eEd~~L~~al~~---~g~~~~~r--W~~IA~~vpGRT~~q-cr~Ry~~L~~d 69 (73)
T 2cqr_A 14 AR-SAEEPWTQNQQKLLELALQQ---YPRGSSDC--WDKIARCVPSKSKED-CIARYKLLVSG 69 (73)
T ss_dssp TT-CSSCCCCHHHHHHHHHHHHH---SCSSSHHH--HHHHGGGCSSSCHHH-HHHHHHHHHSS
T ss_pred cc-cCCCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHc
Confidence 44 78899999999999999999 98 67 999999999999999 99999876654
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.65 E-value=2.5e-09 Score=106.81 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCC----chhhhhccCCCCCCCCCccccCCCCCCCCcC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKN----ITASCTNTTAGTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk----~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas 321 (603)
+++++||+|||++|+++|.+ +|++. .|..||.+|||||+++ |||||+.+|++...
T Consensus 6 ~~k~~FT~EED~~Ile~v~k---~Gn~r~ghk~W~~IAk~LpGRT~ns-IRnRw~~~L~~~ln 64 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRK---NPTRRTTHTLYDEISHYVPNHTGNS-IRHRFRVYLSKRLE 64 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHT---SGGGTTCSHHHHHHTTTSTTSCHHH-HHHHHHHTTGGGCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---hCcCccccccHHHHHHHcCCCCHHH-HHHHHHHHHhhhcc
Confidence 78899999999999999999 98852 4999999999999999 99999999998754
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.62 E-value=7.3e-09 Score=87.42 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 315 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~ 315 (603)
..+++||.|||++|+++|.+ ||.+ |..||.+++|||+.+ |++||..+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~---~G~~--W~~IA~~v~~RT~~q-cr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEM---YKDD--WNKVSEHVGSRTQDE-CILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHH---SSSC--HHHHHHHHSSCCHHH-HHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHh
Confidence 67789999999999999999 9977 999999999999999 99999887
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.57 E-value=5.4e-09 Score=85.10 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhh---ccCCCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCT---NTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA---~~LPGRTdnqtIKNRwns~lrke 319 (603)
-++.+||+|||+.|++.|.+ ||.+ |+.|+ .+++|||+.+ +|++|..++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k---~G~~--W~~I~~~y~f~~~RT~Vd-LKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKT---MGNH--WNSILWSFPFQKGRRAVD-LAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHH---HCSC--HHHHHHHSCCCTTCCHHH-HHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---HhHh--HHHHHHhCCCccCcccch-HHHHHHHHHhcc
Confidence 36689999999999999999 9998 99999 6889999999 999999888765
No 55
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.47 E-value=1.3e-08 Score=92.55 Aligned_cols=56 Identities=5% Similarity=-0.069 Sum_probs=50.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhcc----CCCCCCCCCccccCCCCCCCC
Q 007452 257 NVILGSNSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNT----TAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 257 ~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~----LPGRTdnqtIKNRwns~lrke 319 (603)
-+.+. .++++||.|||++|+++|.+ ||. + |+.|+.. |+|||+++ ||+||..+++..
T Consensus 10 ~~~~r-r~r~~WT~EEd~~L~~gV~k---~G~G~--W~~Ia~~~~~~f~~RT~v~-lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQR-RIRRPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHTA 70 (121)
T ss_dssp CCCCC-CSSCCCCHHHHHHHHHHHHH---HGGGC--HHHHHHHHCSCCSSCCSHH-HHHHHHHHHHHH
T ss_pred cccCC-CCCCCCCHHHHHHHHHHHHH---HCCCC--HHHHHHHhccccCCCCHHH-HHHHHHHHHhhh
Confidence 35566 88999999999999999999 998 7 9999998 49999999 999999998854
No 56
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.45 E-value=1e-08 Score=87.45 Aligned_cols=48 Identities=6% Similarity=-0.057 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhcc----CCCCCCCCCccccCCCCCCCC
Q 007452 266 GSQLSEAQLAARHAMSLALDMPV-KNITASCTNT----TAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 266 gpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~----LPGRTdnqtIKNRwns~lrke 319 (603)
.+||.|||++|+++|.+ ||. + |+.|+.. |+|||+++ ||+||.++++..
T Consensus 1 r~WT~eEd~~L~~gv~k---~G~g~--W~~I~~~~~~~~~~RT~~~-lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHHCTTCTTSCHHH-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---HCCCC--cHHHHHhhccccCCCCHHH-HHHHHHHHHHhc
Confidence 48999999999999999 998 7 9999995 89999999 999999988765
No 57
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.45 E-value=2.1e-08 Score=89.12 Aligned_cols=53 Identities=6% Similarity=-0.079 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhccC----CCCCCCCCccccCCCCCCCCcC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~L----PGRTdnqtIKNRwns~lrkeas 321 (603)
.++++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||..+++....
T Consensus 11 r~r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~f~~RT~v~-lKdrWrnllk~~~~ 68 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEK---LGTGR--WRDVKLCAFEDADHRTYVD-LKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHH---HCSSS--HHHHHSSSSSSTTCCCHHH-HHHHHHHHHHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---hCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhccC
Confidence 78899999999999999999 998 7 99999976 8999999 99999999987633
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=2e-07 Score=77.53 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhHHHHhhhhc
Q 007452 202 KKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 202 kKkg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
.+.+.||.|||++|.+++.+|+. .+|.+||.+ + |||..||+.||..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~--l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE--L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--h-CCCHHHHHHHHHHHHHh
Confidence 35779999999999999999984 569999986 5 89999999999987554
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.38 E-value=2.4e-08 Score=86.91 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCC----CCCchhhhhccCCCCCCCCCccccCCCCCCC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 318 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G----~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrk 318 (603)
.+++||.|||++|++++.. || ++ |..||.+|||||+++ |++||+.++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~---~~~~~~~r--W~~IA~~vpGRT~~q-~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAV---YDKDTPDR--WANVARAVEGRTPEE-VKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHSTTCCHHH-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHH
Confidence 3579999999999999999 74 66 999999999999999 99999987644
No 60
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.36 E-value=2.5e-07 Score=91.92 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhc
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
..+...+||+||++++++++.+|| .+|..||+. +++||..||+.+|.+++||
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 346788999999999999999999 899999987 8999999999999996553
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.20 E-value=7.9e-08 Score=87.51 Aligned_cols=51 Identities=4% Similarity=-0.092 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCC-CCchhhhhccC----CCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G~-Kk~Ws~IA~~L----PGRTdnqtIKNRwns~lrke 319 (603)
.++++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||..+++..
T Consensus 29 r~r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~~~~RT~vd-lKdRWrnllk~~ 84 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEH---LGTGR--WRDVKFRAFENVHHRTYVD-LKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---HSSSC--HHHHHHHHHSSSCCCCHHH-HHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---HCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhc
Confidence 67889999999999999999 998 7 99999974 9999999 999999988754
No 62
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.16 E-value=1.4e-06 Score=73.05 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhHHHHhhhh
Q 007452 204 RKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
...||.|||++|..++..|+. ++|.+||.. +++||..+|+.||..|.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~--V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA--VGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH--TTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH--cCCCCHHHHHHHHHHHHh
Confidence 467999999999999999986 569999987 999999999999998644
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=4.7e-07 Score=72.48 Aligned_cols=48 Identities=4% Similarity=-0.174 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
..++||+||++++++++.+ ||.+ |..||.+|||||..+ |.++|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~---~gk~--w~~Ia~~l~~rt~~~-~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQ---HPKN--FGLIASYLERKSVPD-CVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHH---STTC--HHHHHHHCTTSCHHH-HHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHhcC
Confidence 4579999999999999999 9988 999999999999999 9999876544
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.09 E-value=1.6e-06 Score=69.54 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccchhhhhHHHHh
Q 007452 204 RKPWTAEEDLELISAVQKC--------GEGNWANILR-GDFKWDRTASQLSQRWNI 250 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~--------G~~nW~kIAk-~~f~pgRT~kQCR~RW~n 250 (603)
|.+||+|||+.|+..|.+| |..-|+.+++ . ++.+|-.+||+||.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~--~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS--LTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC--SSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH--CCCCCHHHHHHHHHH
Confidence 6799999999999999999 4444999998 5 899999999999998
No 65
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.82 E-value=1.5e-06 Score=75.77 Aligned_cols=63 Identities=2% Similarity=-0.106 Sum_probs=55.5
Q ss_pred chhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccC-----CCCCCCCCccccCCC
Q 007452 240 TASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT-----AGTTSSATMNNPVPS 314 (603)
Q Consensus 240 T~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~L-----PGRTdnqtIKNRwns 314 (603)
...-+.++|.+ +|.+ ++||.||+..|++++.. |+.+ |..|+.++ ++||..+ +|+||+.
T Consensus 16 i~~yt~eeY~~------~L~~-----~~WTkEETd~Lf~L~~~---fdlR--W~vI~DRy~~~~~~~Rt~Ed-LK~RyY~ 78 (93)
T 3hm5_A 16 VPVYSEQEYQL------YLHD-----DAWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYYH 78 (93)
T ss_dssp CCCCCHHHHHH------HTCB-----TTBCHHHHHHHHHHHHH---TTTC--HHHHHHHSCTTTSCCCCHHH-HHHHHHH
T ss_pred CCccCHHHHHH------HcCC-----CCCCHHHHHHHHHHHHH---hCCC--eeeehhhhccCCCCCCCHHH-HHHHHHH
Confidence 34568899999 7776 59999999999999999 9999 99999999 5899999 9999998
Q ss_pred CCCCC
Q 007452 315 TANAE 319 (603)
Q Consensus 315 ~lrke 319 (603)
+.++.
T Consensus 79 v~~~l 83 (93)
T 3hm5_A 79 ICAKL 83 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 66
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=6.3e-05 Score=60.70 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhh
Q 007452 198 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 198 ~k~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
..++.....||+||-+++.+++.+|| .+|..|++. |+++|+..||.+-|..-++
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKE-LLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHH-SCTTSCHHHHHHHHHHHHC
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCcHHHHHHHHhcccC
Confidence 36777889999999999999999999 699999972 3899999999998876444
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.66 E-value=4.8e-06 Score=82.85 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
...+||.||++++++++.+ ||+. |..||..+++||.++ |||+|+...++-
T Consensus 132 ~s~~WTeEE~~lFleAl~k---YGKD--W~~IAk~VgTKT~~Q-cKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHH---HSSC--HHHHHHHHSSCCHHH-HHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHh
Confidence 3569999999999999999 9999 999999999999999 999999888774
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.58 E-value=3.8e-05 Score=83.50 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhc
Q 007452 201 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 201 RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
.+...+||+||.++++.++.+|| .+|..||+. ++.||..||+..|.+++++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~--VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999 799999987 8999999999999986553
No 69
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.57 E-value=2.7e-05 Score=67.94 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccc-----cccchhhhhHHHHhhhhccCcc
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFK-----WDRTASQLSQRWNILRKKHGNV 258 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~-----pgRT~kQCR~RW~nlrRr~~~L 258 (603)
..+||.|||..|++++++|| .+|..|+.. + ++||..++++||..++++...+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DR--y~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDR--YDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHH--SCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhh--hccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999 999999976 4 5899999999999887754443
No 70
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.57 E-value=1e-05 Score=67.35 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCC----CCCchhhhhccCCCCCCCCCccccCCCCCCCC
Q 007452 263 NSSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 263 IkkgpWT~EEDe~Lleav~~al~~G----~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrke 319 (603)
...++||.|||++|.+++.+ || .+ |..||.++ |||..+ |++||..+....
T Consensus 6 ~~~~~WT~eE~k~fe~al~~---~p~~t~~R--W~~IA~~l-gRt~~e-V~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVK---FPGGTPGR--WEKIAHEL-GRSVTD-VTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHH-TSCHHH-HHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHh-CCCHHH-HHHHHHHHHHhc
Confidence 56789999999999999999 85 56 99999997 999999 999998776553
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.56 E-value=1.8e-05 Score=66.44 Aligned_cols=48 Identities=17% Similarity=0.446 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC---CcccccccccccccchhhhhHHHHh
Q 007452 201 RKKRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNI 250 (603)
Q Consensus 201 RkKkg~WT~EEDe~Ll~lV~k~G~~---nW~kIAk~~f~pgRT~kQCR~RW~n 250 (603)
+-....||.||+++|..++..|+.+ +|.+||.. ++|||..+|+.+|..
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYEL 67 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 3346789999999999999999865 69999987 999999999999974
No 72
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.48 E-value=3.3e-05 Score=65.09 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC------C---Ccccccccc--cccccchhhhhHHHHhhhhccCcccC
Q 007452 201 RKKRKPWTAEEDLELISAVQKCGE------G---NWANILRGD--FKWDRTASQLSQRWNILRKKHGNVIL 260 (603)
Q Consensus 201 RkKkg~WT~EEDe~Ll~lV~k~G~------~---nW~kIAk~~--f~pgRT~kQCR~RW~nlrRr~~~LnP 260 (603)
|++...||.+|...|+.+...+.. . .|..||..+ ..-.|++.||+.+|.+|.+....+.-
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999975321 1 499999871 12389999999999999776555544
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.42 E-value=0.00036 Score=60.86 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccchhhhhHHHHhhhh
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~--~nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
++..+-.-||.|||+.|+..+++.|. ..|..||+. +.+|+..|+++||+.|++
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~--L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ--LGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH--HSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH--HccCCHHHHHHHHHHHHH
Confidence 34457889999999999999999985 369999987 789999999999998655
No 74
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.26 E-value=3.9e-05 Score=83.35 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 318 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwns~lrk 318 (603)
...||.||-+++++++.+ ||.. |..|+..+..||..+ ||++|+..-++
T Consensus 380 ~~~WT~eE~~~f~~al~~---yGkd--w~~IA~~VgTKT~~Q-vk~fy~~~kkr 427 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNYRRR 427 (482)
T ss_dssp CSCCCHHHHHHHHHHHHH---HTTC--HHHHHHHHSSCCHHH-HHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHhCCCCHHH-HHHHHHHHHHH
Confidence 458999999999999999 9999 999999999999999 99998754444
No 75
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.12 E-value=0.00061 Score=56.10 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhccCccc
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 259 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr~~~Ln 259 (603)
.|.....||+||-+++..++.+|| .+|..|++. |+++|+..||.+-|..-+|...+..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~wKkt~~y~q 61 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KDFNDIRQD-FLPWKSLTSIIEYYYMWKTTDRYVQ 61 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHT-TCSSSCHHHHHHHHHHHHTCCSSCS
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCCHHHHHHHHHhhcCCchHHH
Confidence 346788999999999999999999 699999972 3899999999999986666555433
No 76
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.96 E-value=0.0002 Score=60.02 Aligned_cols=54 Identities=6% Similarity=0.046 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCC--CchhhhhccCCCCCCCCCccccCCCCCCCCcC
Q 007452 264 SSGSQLSEAQLAARHAMSLALDMPVK--NITASCTNTTAGTTSSATMNNPVPSTANAEAS 321 (603)
Q Consensus 264 kkgpWT~EEDe~Lleav~~al~~G~K--k~Ws~IA~~LPGRTdnqtIKNRwns~lrkeas 321 (603)
....||.+|+++|.+++.. |+.. ..|..||..+||||..+ |+.||..+++...+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~---~~~~tp~rWe~IA~~V~gKT~eE-~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFAS---LPKHKPGFWSEVAAAVGSRSPEE-CQRKYMENPRGKGS 62 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHH---SCSSSSSHHHHHHHHTTTSCHHH-HHHHHHHSSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCccHHHHHHHHcCCCCHHH-HHHHHHHHHhcccc
Confidence 3468999999999999998 6532 23999999999999999 99999888776544
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.95 E-value=0.00062 Score=59.06 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhhhhc
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKK 254 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nlrRr 254 (603)
.|.....||+||.+++.++...|| .+|..|+.. +++||..||-+-|..-+|.
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~--l~~Kt~~~cV~~YY~~Kk~ 90 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASF--LERKTVAECVLYYYLTKKN 90 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHST-TCHHHHHHT--CTTCCHHHHHHHHHHHSCC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH--cCCCCHHHHHHHHhccccC
Confidence 345678999999999999999999 899999865 8999999999998765443
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.95 E-value=0.00015 Score=60.25 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC--CcccccccccccccchhhhhHHHHhhhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGEG--NWANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~~--nW~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
.-..||.|||+.|+..+++.|.. -|..||+. + +|++.|+.+||+.|++
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~--L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK--L-DKNPNQVSERFQQLMK 62 (70)
Confidence 56789999999999999999952 59999987 5 9999999999998654
No 79
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.90 E-value=0.00016 Score=59.94 Aligned_cols=47 Identities=2% Similarity=-0.173 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCC-CchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 266 GSQLSEAQLAARHAMSLALDMPVK-NITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 266 gpWT~EEDe~Lleav~~al~~G~K-k~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
--||.|||+.|+..+.+ .|.. +-|+.||..| +|+.++ |+|||..+++
T Consensus 15 vlWTReeDR~IL~~cq~---~G~s~~tfa~iA~~L-nks~~Q-V~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQK---RGPSSKTFAYLAAKL-DKNPNQ-VSERFQQLMK 62 (70)
Confidence 36999999999999998 7772 2399999999 999999 9999987664
No 80
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.46 E-value=0.00041 Score=55.56 Aligned_cols=51 Identities=2% Similarity=-0.108 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC-----CCCCchhhhhc-cCCCCCCCCCccccCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDM-----PVKNITASCTN-TTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~-----G~Kk~Ws~IA~-~LPGRTdnqtIKNRwns~lr 317 (603)
+.+||.|||++|++.|...-.. |++ .|..++. .+|++|=.+ +++||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~-iwk~la~~~~~~HtwqS-wRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQS-LKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHH-HHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHH-HHHHHHHhHCCCCCHHH-HHHHHHHHcc
Confidence 4689999999999999993211 444 7999999 899999888 9999876554
No 81
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.29 E-value=0.0013 Score=68.01 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh------------------------hh------
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL------------------------RK------ 253 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl------------------------rR------ 253 (603)
-+.||..+...++.++.+||..+|..||.. +++.|...++.-+..+ .|
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e--v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKD--VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTS--STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999987 7888888775322111 00
Q ss_pred -----ccCccc---------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--Cchhhhh------------ccCCCCCCC
Q 007452 254 -----KHGNVI---------LGSNSSGSQLSEAQLAARHAMSLALDMPVK--NITASCT------------NTTAGTTSS 305 (603)
Q Consensus 254 -----r~~~Ln---------P~~IkkgpWT~EEDe~Lleav~~al~~G~K--k~Ws~IA------------~~LPGRTdn 305 (603)
-..+-+ +. -+...||.+||..|+-++.. ||.. .+|..|. -++-.||..
T Consensus 188 ~l~~Ki~~~~~P~~~L~i~y~~-~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~ 263 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRLQYGN-NKGKNYTEIEDRFLVCMLHK---LGFDKENVYEELRAAIRASPQFRFDWFIKSRTAL 263 (304)
T ss_dssp HHHHHHHTCSSHHHHCCCCCTT-CCCSSCCHHHHHHHHHHHHH---HCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHH
T ss_pred HHHHHHHHhcCcHHHhccccCC-CCCCccCHHHHHHHHHHHHH---hcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHH
Confidence 000111 22 35568999999999888888 7761 2699996 255678887
Q ss_pred CCccccCCCCCC
Q 007452 306 ATMNNPVPSTAN 317 (603)
Q Consensus 306 qtIKNRwns~lr 317 (603)
. |..|.+.+++
T Consensus 264 e-l~rRc~tLi~ 274 (304)
T 1ofc_X 264 E-LQRRCNTLIT 274 (304)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 7 7777666554
No 82
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.24 E-value=0.0043 Score=50.82 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC--cccccccccccccchhhhhHHHHhhhh
Q 007452 199 PPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNILRK 253 (603)
Q Consensus 199 k~RkKkg~WT~EEDe~Ll~lV~k~G~~n--W~kIAk~~f~pgRT~kQCR~RW~nlrR 253 (603)
..++.+..||+|+.+.+..+|+++|..+ |+.|.+.+.++|.|..|++.|.++||-
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999999332 789988755679999999999998754
No 83
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.05 E-value=0.00042 Score=60.45 Aligned_cols=48 Identities=6% Similarity=-0.075 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCC-CchhhhhccCCCCCCCCCccccCCCCCC
Q 007452 266 GSQLSEAQLAARHAMSLALDMPVK-NITASCTNTTAGTTSSATMNNPVPSTAN 317 (603)
Q Consensus 266 gpWT~EEDe~Lleav~~al~~G~K-k~Ws~IA~~LPGRTdnqtIKNRwns~lr 317 (603)
--||.|||+.|+....+ .|.. +-|+.||..|.+|+.++ |+|||+.+++
T Consensus 34 vlWTRe~DR~IL~~cQ~---~G~s~~tFa~iA~~L~Nks~nq-V~~RFq~Lm~ 82 (95)
T 1ug2_A 34 VLWTREADRVILTMCQE---QGAQPHTFSVISQQLGNKTPVE-VSHRFRELMQ 82 (95)
T ss_dssp SSSCHHHHHHHHHHHHH---TTSCTTTHHHHHHHHSSCCHHH-HHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHh---cCCChhHHHHHHHHHccCCHHH-HHHHHHHHHH
Confidence 47999999999999999 8762 34999999999999999 9999987654
No 84
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.00 E-value=0.00083 Score=56.50 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC----CCCchhhhhccCCCCCCCCCccccCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVP 313 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G----~Kk~Ws~IA~~LPGRTdnqtIKNRwn 313 (603)
..+||.+|++++..++.. |+ .+ |.+||..+||||-.+ |+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~---yp~~tpdR--WekIA~~VpGKT~eE-Vk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSF---TNKDTPDR--WKKVAQYVKGRTPEE-VKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSS---SCSSCCSS--STTTGGGSCSSCHHH-HHGGGC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHcCCCCHHH-HHHHHH
Confidence 358999999999888877 64 36 999999999999988 888875
No 85
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.0034 Score=50.53 Aligned_cols=48 Identities=0% Similarity=-0.214 Sum_probs=42.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhc-cCCCCCCCCCccccCC
Q 007452 259 ILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVP 313 (603)
Q Consensus 259 nP~~IkkgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~-~LPGRTdnqtIKNRwn 313 (603)
-|. +...+||+||-++-.+++.+ ||.. |..|+. ++++||-.+ |..+|+
T Consensus 4 ~p~-~~~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY 52 (63)
T 2yqk_A 4 GSS-GIEKCWTEDEVKRFVKGLRQ---YGKN--FFRIRKELLPNKETGE-LITFYY 52 (63)
T ss_dssp CCC-CCCCSCCHHHHHHHHHHHHH---TCSC--HHHHHHHSCTTSCHHH-HHHHHH
T ss_pred CCC-cCCCCcCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCcHHH-HHHHHh
Confidence 466 78899999999999999999 9999 999999 699999888 776655
No 86
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.53 E-value=0.0084 Score=52.40 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccc-c--ccccchhhhhHHHHhhhhccC
Q 007452 205 KPWTAEEDLELISAVQKCGEGNWANILRGD-F--KWDRTASQLSQRWNILRKKHG 256 (603)
Q Consensus 205 g~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~-f--~pgRT~kQCR~RW~nlrRr~~ 256 (603)
..||.||...|.+++++|+ -+|--|+..+ + ...||-.++++||..++++..
T Consensus 31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999 9999999762 1 148999999999998877543
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.38 E-value=0.027 Score=53.79 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCCcccccccccccccchhhhhH
Q 007452 200 PRKKRKPWTAEEDLELISAVQKCG--EGNWANILRGDFKWDRTASQLSQ 246 (603)
Q Consensus 200 ~RkKkg~WT~EEDe~Ll~lV~k~G--~~nW~kIAk~~f~pgRT~kQCR~ 246 (603)
+|.....||+.|=..|++++.+|| .++|..|+...-+.+++...++.
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 456788999999999999999999 67899998752245677766664
No 88
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.74 E-value=0.03 Score=57.92 Aligned_cols=50 Identities=32% Similarity=0.323 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------ccccccchhhhhHHHHhhh
Q 007452 203 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNILR 252 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~----------~f~pgRT~kQCR~RW~nlr 252 (603)
+++.||+|||..|+-++.+||. |+|..|-.. .|+..||+.++..|-..|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 5568999999999999999999 999999522 3577999999999998753
No 89
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.35 E-value=0.02 Score=49.60 Aligned_cols=42 Identities=7% Similarity=-0.130 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCCCCCCCCCccccCC
Q 007452 266 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP 313 (603)
Q Consensus 266 gpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LPGRTdnqtIKNRwn 313 (603)
..||+||.++..+++.. ||.. |..|+.+||+||-.+ |-.+|+
T Consensus 44 ~~WT~eE~~~F~~~~~~---~gK~--F~~Ia~~l~~Kt~~~-cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQ---HPKN--FGLIASFLERKTVAE-CVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHH---STTC--HHHHHHTCTTCCHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---cCCC--HHHHHHHcCCCCHHH-HHHHHh
Confidence 68999999999999999 9999 999999999999877 655544
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.32 E-value=0.049 Score=51.99 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRG 233 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~ 233 (603)
...||++||..|+.+|.+||-|+|..|-..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 456999999999999999999999998654
No 91
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.47 E-value=0.031 Score=45.91 Aligned_cols=43 Identities=2% Similarity=-0.183 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhc-cCCCCCCCCCccccCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVP 313 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~-~LPGRTdnqtIKNRwn 313 (603)
...||+||-++-.+++.+ ||.. |..|+. +||+||-.+ |..+|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEK---YGKD--FNDIRQDFLPWKSLTS-IIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHH---TCSC--HHHHHHTTCSSSCHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCCHHH-HHHHHH
Confidence 468999999999999999 9999 999999 699999888 777666
No 92
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.27 E-value=0.059 Score=54.81 Aligned_cols=29 Identities=41% Similarity=0.728 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc
Q 007452 205 KPWTAEEDLELISAVQKCGEGNWANILRG 233 (603)
Q Consensus 205 g~WT~EEDe~Ll~lV~k~G~~nW~kIAk~ 233 (603)
..|+.+||..|+.+|.+||.|+|..|...
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 47999999999999999999999999754
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.18 E-value=0.02 Score=50.00 Aligned_cols=49 Identities=0% Similarity=-0.137 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchhhhhccCC-----CCCCCCCccccCCCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-----GTTSSATMNNPVPSTANAE 319 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~Ws~IA~~LP-----GRTdnqtIKNRwns~lrke 319 (603)
...||.||-..|+++++. +.-+ |..|+..+. +||-.+ +|.||+...++-
T Consensus 30 ~~~WT~eETd~LfdLc~~---fdlR--w~vI~DRy~~~~~~~RtvEd-LK~RYY~V~~~l 83 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYYHICAKL 83 (93)
T ss_dssp BTTBCHHHHHHHHHHHHH---TTTC--HHHHHHHCCTTTSCCCCHHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---cCCC--eEEEeeccccCCCCCCCHHH-HHHHHHHHHHHH
Confidence 358999999999999999 9999 999999984 688888 999999876653
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=88.97 E-value=0.28 Score=52.10 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------ccccccchhhhhHHHHh
Q 007452 203 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNI 250 (603)
Q Consensus 203 Kkg~WT~EEDe~Ll~lV~k~G~---~nW~kIAk~----------~f~pgRT~kQCR~RW~n 250 (603)
+++.||+|||..|+-++.+||. |+|..|-.. .|+..||+..+..|-..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 3568999999999999999999 999999322 23567888888777776
No 95
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=78.37 E-value=4.8 Score=42.76 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccc-ccchhhhhHHHHhh-------------------------------
Q 007452 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNIL------------------------------- 251 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~~nW~kIAk~~f~p-gRT~kQCR~RW~nl------------------------------- 251 (603)
-+.||.-+=..++.++.+||..+-..||.. +. +.|...++ ||...
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~e--v~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~ 199 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARE--LAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQ 199 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSS--CCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHH--HccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999889999987 55 77777776 33111
Q ss_pred -----hhccCcccC----------CCCCCCCCCHHHHHHHHHHHHhhcCCCCC--Cchhhhhcc------------CCCC
Q 007452 252 -----RKKHGNVIL----------GSNSSGSQLSEAQLAARHAMSLALDMPVK--NITASCTNT------------TAGT 302 (603)
Q Consensus 252 -----rRr~~~LnP----------~~IkkgpWT~EEDe~Lleav~~al~~G~K--k~Ws~IA~~------------LPGR 302 (603)
++-..+-+| .+-+...||.+||..|+-++.. +|.. .+|-.|-.. +..|
T Consensus 200 ~~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSR 276 (374)
T 2y9y_A 200 QEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFK---YGLDRDDVYELVRDEIRDCPLFELDFYFRSR 276 (374)
T ss_dssp HHHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHH---HTTCSSCCHHHHHHHHHHCSGGGSCHHHHTC
T ss_pred HHHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHH---hccCCCChHHHHHHHHHhCcchhhhHHHhcC
Confidence 111111222 1014568999999998888888 6652 259988443 4568
Q ss_pred CCCCCccccCCCCCC
Q 007452 303 TSSATMNNPVPSTAN 317 (603)
Q Consensus 303 TdnqtIKNRwns~lr 317 (603)
|... |..|.+.+++
T Consensus 277 T~~E-L~rRc~tLi~ 290 (374)
T 2y9y_A 277 TPVE-LARRGNTLLQ 290 (374)
T ss_dssp CHHH-HHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHH
Confidence 8777 7766665443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=73.10 E-value=11 Score=38.32 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccch
Q 007452 204 RKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTA 241 (603)
Q Consensus 204 kg~WT~EEDe~Ll~lV~k~G~--~nW~kIAk~~f~pgRT~ 241 (603)
++.||+.|=..|++.+.+||. .+|..|+...-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~ 42 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSF 42 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCH
Confidence 688999999999999999994 67999966522334443
No 97
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=47.53 E-value=0.55 Score=39.12 Aligned_cols=52 Identities=2% Similarity=-0.097 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhc-----CCCCCCchhhhhccCC----CCCCCCCccccCCCCCC
Q 007452 265 SGSQLSEAQLAARHAMSLAL-----DMPVKNITASCTNTTA----GTTSSATMNNPVPSTAN 317 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al-----~~G~Kk~Ws~IA~~LP----GRTdnqtIKNRwns~lr 317 (603)
...||.+|-.+||++....- ...++..|..||..|. .||..+ |+++|..+.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~q-C~~K~~nL~k 64 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDM-CTDKWRNLLK 64 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 45799999999999987611 1122235999999973 699999 9998877554
No 98
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=34.17 E-value=12 Score=30.98 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHhhhhhcc--cccccccCCCCC
Q 007452 67 MLWRHLAYRN--TLFDKLEDNAQP 88 (603)
Q Consensus 67 mlwrh~ay~~--~~~~~~~~~~~p 88 (603)
-|||||.|+| .|.+-...+..|
T Consensus 47 nL~rHL~~~H~~e~~~~~~~~~~~ 70 (73)
T 2ct5_A 47 NLSYHLEKNHPEEFCEFVKSNSGP 70 (73)
T ss_dssp HHHHHHHHSCHHHHHHHCCCCSSC
T ss_pred hHHHHHHHHCHHHHHHHHHcCCCC
Confidence 5999999999 455533333433
No 99
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=27.37 E-value=13 Score=30.42 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCc-hhhhhccC--CCCCCCCCcccc
Q 007452 265 SGSQLSEAQLAARHAMSLALDMPVKNI-TASCTNTT--AGTTSSATMNNP 311 (603)
Q Consensus 265 kgpWT~EEDe~Lleav~~al~~G~Kk~-Ws~IA~~L--PGRTdnqtIKNR 311 (603)
+-.||+|.-+..++++.. +|..+. |..|...| +|.|-.+ |+.|
T Consensus 7 r~~WT~elH~~Fv~Av~~---LG~~~AtPk~Il~~M~v~gLT~~~-VkSH 52 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDH---LGVERAVPKKILDLMNVDKLTREN-VASH 52 (64)
T ss_dssp SCSSCHHHHHHHHHHHHH---HCTTTCCHHHHHHHHCCTTCCHHH-HHHH
T ss_pred CCcCCHHHHHHHHHHHHH---hCCCCCCcHHHHHHcCCCCCCHHH-HHHH
Confidence 468999999999999999 775433 78888776 6777655 6554
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=24.95 E-value=31 Score=31.01 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=41.8
Q ss_pred HHHHHHHHhCC-------CCcccccccccccc---cchhhhhHHHHhhhhccCcccCCCCCCCCCCHHHHHHHHHHHHh
Q 007452 214 ELISAVQKCGE-------GNWANILRGDFKWD---RTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 282 (603)
Q Consensus 214 ~Ll~lV~k~G~-------~nW~kIAk~~f~pg---RT~kQCR~RW~nlrRr~~~LnP~~IkkgpWT~EEDe~Lleav~~ 282 (603)
.|...|.+.|. +.|..|+..+-++. -.+..+|..|.+ +|.|= ..++++|-..|.+-+..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k------~L~~Y----E~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQ------YLLSY----DSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHT------THHHH----HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHH------HhHHH----HCcCHHHHhhHHHHHHH
Confidence 57777777772 35999998722232 124678888988 88886 45788888888776654
No 101
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=24.50 E-value=1.3e+02 Score=21.54 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=28.5
Q ss_pred cccccccchhHHHHHhhhh----HHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 9 QKKGSISEGDVSSLLQRYT----ANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 9 ~~k~~~se~d~~~~~~ry~----~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
.+.+.|+.+++..+|.++. ...+-.+++++-.--+..|+|.+++.
T Consensus 12 d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~ 60 (66)
T 3li6_A 12 NGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60 (66)
T ss_dssp TCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHH
T ss_pred CCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence 3568899999998888753 33444455544333356677776653
No 102
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.96 E-value=47 Score=29.93 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccchhhhhHHHHhh------hhccCcccCC
Q 007452 210 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL------RKKHGNVILG 261 (603)
Q Consensus 210 EEDe~Ll~lV~k~G~~nW~kIAk~~f~pgRT~kQCR~RW~nl------rRr~~~LnP~ 261 (603)
+-|..|+.+.++.|.-.|..||+. -|-+...|+.|+..| ++....+||.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~---lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKK---VGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHH---HTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 568899999999998899999987 388999999999987 3345666776
No 103
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=22.91 E-value=1.2e+02 Score=23.41 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=27.4
Q ss_pred cccc-cccchhHHHHHhh---------hhHHHHHHHHHHHhcCCCCCccHHHHH
Q 007452 9 QKKG-SISEGDVSSLLQR---------YTANTVLALLQEVAQFPDVKLDWNALV 52 (603)
Q Consensus 9 ~~k~-~~se~d~~~~~~r---------y~~~t~l~~lqe~~~~~~~~~dw~~lv 52 (603)
.+.+ .|+.+++..+|.+ .+...|-.+++++-.-.+.+|+|.+++
T Consensus 22 d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~ 75 (93)
T 1k2h_A 22 EGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75 (93)
T ss_dssp SSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHH
T ss_pred CCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3556 8999999888876 234555556665544444556665544
No 104
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.64 E-value=1.2e+02 Score=24.25 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=23.9
Q ss_pred ccccccchhHHHHHhhh----hHHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 10 KKGSISEGDVSSLLQRY----TANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 10 ~k~~~se~d~~~~~~ry----~~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
+.+.|+.+|+..+|..+ +...|-.+++++-.-.+.+|+|.+++.
T Consensus 42 ~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~ 89 (94)
T 2kz2_A 42 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89 (94)
T ss_dssp CCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred CcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 44566666666666543 334455555554433445666665543
No 105
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=21.28 E-value=78 Score=24.26 Aligned_cols=44 Identities=14% Similarity=0.386 Sum_probs=26.9
Q ss_pred cccc-cccchhHHHHHhh-------hhHHHHHHHHHHHhcCCCCCccHHHHH
Q 007452 9 QKKG-SISEGDVSSLLQR-------YTANTVLALLQEVAQFPDVKLDWNALV 52 (603)
Q Consensus 9 ~~k~-~~se~d~~~~~~r-------y~~~t~l~~lqe~~~~~~~~~dw~~lv 52 (603)
.+.+ .|+.+++..+|.+ .+...+-.+++++-.--+.+|+|.+++
T Consensus 23 d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~ 74 (90)
T 1k8u_A 23 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYV 74 (90)
T ss_dssp SSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence 3456 7888888888876 234455556666554444556665544
No 106
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.27 E-value=98 Score=23.95 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=32.7
Q ss_pred cccccccchhHHHHHhhh----hHHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 9 QKKGSISEGDVSSLLQRY----TANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 9 ~~k~~~se~d~~~~~~ry----~~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
.+.+.|+-+++..+|..+ +...|-.+++++-.-.+..|+|.+++.
T Consensus 21 d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~ 69 (92)
T 2kn2_A 21 DQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69 (92)
T ss_dssp TCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHH
T ss_pred CCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 356789999999988874 456677777776655567788887654
No 107
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.40 E-value=36 Score=29.39 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHhcCC--CCCccHHHHHhhcccCccchHH
Q 007452 37 EVAQFP--DVKLDWNALVKKTSTGISNARE 64 (603)
Q Consensus 37 e~~~~~--~~~~dw~~lv~kt~tgi~~are 64 (603)
-||+|+ |..+||++|+.---+ +-|++|
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~-~en~~e 35 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLI-IENFEE 35 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTT-CSTHHH
T ss_pred ccccCCcCCCccCHHHHHHHHHh-hccHHH
Confidence 367776 899999999986544 455554
No 108
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=20.38 E-value=92 Score=24.86 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=23.4
Q ss_pred ccccccchhHHHHHhhh-------hHHHHHHHHHHHhcCCCCCccHHHHH
Q 007452 10 KKGSISEGDVSSLLQRY-------TANTVLALLQEVAQFPDVKLDWNALV 52 (603)
Q Consensus 10 ~k~~~se~d~~~~~~ry-------~~~t~l~~lqe~~~~~~~~~dw~~lv 52 (603)
+.+.|+-+++..+|+.+ +...|-.+++++-.--+.+|+|.+++
T Consensus 54 ~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~ 103 (109)
T 5pal_A 54 QSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFA 103 (109)
T ss_dssp CSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 34556666666666554 44445555555544344556666554
No 109
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.28 E-value=99 Score=25.67 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=25.9
Q ss_pred ccccccchhHHHHHhhh----hHHHHHHHHHHHhcCCCCCccHHHHHh
Q 007452 10 KKGSISEGDVSSLLQRY----TANTVLALLQEVAQFPDVKLDWNALVK 53 (603)
Q Consensus 10 ~k~~~se~d~~~~~~ry----~~~t~l~~lqe~~~~~~~~~dw~~lv~ 53 (603)
+.+.|+-+++..+|..+ +...|-.+++++-.--+.+|||.+.|+
T Consensus 49 ~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~ 96 (100)
T 2lv7_A 49 GNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 96 (100)
T ss_dssp CSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHH
Confidence 45666666666666543 445555666665444456677766653
No 110
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=20.15 E-value=1e+02 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=6.7
Q ss_pred cccccchhHHHHHhh
Q 007452 11 KGSISEGDVSSLLQR 25 (603)
Q Consensus 11 k~~~se~d~~~~~~r 25 (603)
.+.|+-+++..+|..
T Consensus 56 ~G~i~~~el~~~l~~ 70 (109)
T 3fs7_A 56 SGFIEEEELQLFLKN 70 (109)
T ss_dssp SSSBCHHHHHTTGGG
T ss_pred CCeEeHHHHHHHHHH
Confidence 344444444444443
Done!